BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045845
(69 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|414590409|tpg|DAA40980.1| TPA: hypothetical protein ZEAMMB73_597299 [Zea mays]
Length = 658
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/41 (82%), Positives = 36/41 (87%)
Query: 29 DSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
DS GFGFLSLD+DEDADAAIR DETEWNGRII VEKSK+
Sbjct: 616 DSRGFGFLSLDKDEDADAAIRACDETEWNGRIILVEKSKAP 656
>gi|414590408|tpg|DAA40979.1| TPA: hypothetical protein ZEAMMB73_597299 [Zea mays]
Length = 657
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/41 (82%), Positives = 36/41 (87%)
Query: 29 DSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
DS GFGFLSLD+DEDADAAIR DETEWNGRII VEKSK+
Sbjct: 615 DSRGFGFLSLDKDEDADAAIRACDETEWNGRIILVEKSKAP 655
>gi|218188225|gb|EEC70652.1| hypothetical protein OsI_01937 [Oryza sativa Indica Group]
Length = 382
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/41 (80%), Positives = 36/41 (87%)
Query: 29 DSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
DS GFGFLSL++DEDADAAIR DETEWNGRII VEKSK+
Sbjct: 340 DSRGFGFLSLEKDEDADAAIRACDETEWNGRIILVEKSKAP 380
>gi|297719959|ref|NP_001172341.1| Os01g0367300 [Oryza sativa Japonica Group]
gi|57900228|dbj|BAD88333.1| peptidylprolyl cis-trans isomerase-like protein [Oryza sativa
Japonica Group]
gi|255673231|dbj|BAH91071.1| Os01g0367300 [Oryza sativa Japonica Group]
Length = 698
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/41 (80%), Positives = 36/41 (87%)
Query: 29 DSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
DS GFGFLSL++DEDADAAIR DETEWNGRII VEKSK+
Sbjct: 656 DSRGFGFLSLEKDEDADAAIRACDETEWNGRIILVEKSKAP 696
>gi|58737192|dbj|BAD89467.1| putative nuclear protein [Oryza sativa Japonica Group]
Length = 674
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/41 (80%), Positives = 36/41 (87%)
Query: 29 DSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
DS GFGFLSL++DEDADAAIR DETEWNGRII VEKSK+
Sbjct: 632 DSRGFGFLSLEKDEDADAAIRACDETEWNGRIILVEKSKAP 672
>gi|222618441|gb|EEE54573.1| hypothetical protein OsJ_01776 [Oryza sativa Japonica Group]
Length = 978
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 38/65 (58%), Positives = 47/65 (72%), Gaps = 3/65 (4%)
Query: 7 RDRESKTYQLLRLS---LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
RD E K + R++ ++ + DS GFGFLSL++DEDADAAIR DETEWNGRII V
Sbjct: 344 RDLEKKFSKYGRVTSARVVRDKRSGDSRGFGFLSLEKDEDADAAIRACDETEWNGRIILV 403
Query: 64 EKSKS 68
EKSK+
Sbjct: 404 EKSKA 408
>gi|357122647|ref|XP_003563026.1| PREDICTED: uncharacterized protein LOC100823440 [Brachypodium
distachyon]
Length = 644
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 35/41 (85%)
Query: 29 DSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
DS GFGFL L++DEDADAAI+ DETEWNGRII VEKSK+
Sbjct: 602 DSRGFGFLCLEKDEDADAAIQACDETEWNGRIILVEKSKAP 642
>gi|148906727|gb|ABR16511.1| unknown [Picea sitchensis]
Length = 635
Score = 68.9 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/66 (57%), Positives = 49/66 (74%), Gaps = 3/66 (4%)
Query: 7 RDRESKTYQLLRLS---LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
RD E K + R++ ++ L DS GFGFLSL+RDEDADAAIR LD+T+WNGRI+ V
Sbjct: 568 RDLEKKFSRFGRVNDVRIVRDKLTGDSRGFGFLSLERDEDADAAIRALDQTQWNGRIVLV 627
Query: 64 EKSKST 69
EKSK++
Sbjct: 628 EKSKTS 633
>gi|302781458|ref|XP_002972503.1| hypothetical protein SELMODRAFT_26372 [Selaginella
moellendorffii]
gi|300159970|gb|EFJ26589.1| hypothetical protein SELMODRAFT_26372 [Selaginella
moellendorffii]
Length = 107
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+K +++ L++ L R+S GFGF+++D EDAD I+ L + +GR I VEK+K
Sbjct: 32 AKEGKVIECCLVTDPLTRESRGFGFVTMDTVEDADRCIKYLHRSNLDGRSITVEKAK 88
>gi|353241446|emb|CCA73260.1| related to Transformer-2 protein homolog [Piriformospora indica DSM
11827]
Length = 257
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 41/57 (71%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+K ++ + S++ +R+S GFGF++++ EDADAAI L+ TE G+II+VE+++
Sbjct: 116 AKVGKVKKASVMYDPHSRESRGFGFVTMETVEDADAAISQLNSTEQQGKIINVERAR 172
>gi|302673357|ref|XP_003026365.1| hypothetical protein SCHCODRAFT_30182 [Schizophyllum commune
H4-8]
gi|300100047|gb|EFI91462.1| hypothetical protein SCHCODRAFT_30182, partial [Schizophyllum
commune H4-8]
Length = 79
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 6 SRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIH 62
+RD E+ + R+ S++ R+S GFGF++++ E+A+AA+ L+ TE G+II
Sbjct: 17 TRDLEAAFKEFGRVQKASVMYDPHTRESRGFGFVTMESPEEAEAAVNGLNGTELQGKIIR 76
Query: 63 VEK 65
VEK
Sbjct: 77 VEK 79
>gi|389751764|gb|EIM92837.1| RNA-binding domain-containing protein, partial [Stereum hirsutum
FP-91666 SS1]
Length = 127
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 6 SRDRES---KTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIH 62
+RD E+ K ++ + S++ R+S GFGF++++ E+ADAAI L+ E+ G++++
Sbjct: 17 TRDLEAAFGKIGRVQKASVMLDPHTRESRGFGFVTMETAEEADAAITALNAVEFMGKVMN 76
Query: 63 VEK 65
VEK
Sbjct: 77 VEK 79
>gi|302821798|ref|XP_002992560.1| hypothetical protein SELMODRAFT_49595 [Selaginella
moellendorffii]
gi|300139629|gb|EFJ06366.1| hypothetical protein SELMODRAFT_49595 [Selaginella
moellendorffii]
Length = 79
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65
+K +++ L++ L R+S GFGF+++D EDAD I+ L + +GR I VEK
Sbjct: 25 AKEGKVIECCLVTDPLTRESRGFGFVTMDTVEDADRCIKYLHRSNLDGRSITVEK 79
>gi|168007043|ref|XP_001756218.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692728|gb|EDQ79084.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 158
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S+ +++ L+ R+S GFGF+++D +DAD ++ L+ + GRII VEK+K
Sbjct: 38 SREGKVVECRLVVDPRTRESRGFGFVTMDNADDADRCVKYLNRSTLEGRIITVEKAK 94
>gi|430813261|emb|CCJ29365.1| unnamed protein product [Pneumocystis jirovecii]
Length = 272
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 16 LLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+++ S++S ++S GFGF+++ EDAD AI + E+ GR+ VEK++
Sbjct: 92 VVKCSIVSDPYTKESRGFGFVTMATPEDADKAIEAANGQEYYGRVFSVEKAR 143
>gi|393242223|gb|EJD49742.1| hypothetical protein AURDEDRAFT_112522 [Auricularia delicata
TFB-10046 SS5]
Length = 201
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 36/53 (67%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
Q+ + +++ R+S GFGF++++ EDADAAI L TE+ G+ + +EK++
Sbjct: 27 QVQKAAVMLDPHTRESRGFGFVTMEVPEDADAAISGLVGTEFMGKTLSIEKAR 79
>gi|307108943|gb|EFN57182.1| hypothetical protein CHLNCDRAFT_51257 [Chlorella variabilis]
Length = 105
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 29 DSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
+S GFGF++++ E AD A+R LD T+WNGR + VE +K+
Sbjct: 64 ESRGFGFVAMESVEAADRAVRKLDGTDWNGRRLLVEVAKNP 104
>gi|443319940|ref|ZP_21049081.1| RRM domain-containing RNA-binding protein [Gloeocapsa sp. PCC
73106]
gi|442790348|gb|ELR99940.1| RRM domain-containing RNA-binding protein [Gloeocapsa sp. PCC
73106]
Length = 98
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++ R+ L + GFGF+ ++ DE DAAI TLD EW GR + V K+K
Sbjct: 26 KVKRVYLPTDPETGKLRGFGFVEMETDEQEDAAIETLDGAEWMGREMRVNKAKP 79
>gi|299756715|ref|XP_002912240.1| hypothetical protein CC1G_13772 [Coprinopsis cinerea okayama7#130]
gi|298411800|gb|EFI28746.1| hypothetical protein CC1G_13772 [Coprinopsis cinerea okayama7#130]
Length = 241
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 6 SRDRES---KTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIH 62
SRD E+ K ++ + S++ R+S GFGF++++ E+A+AAI +L+ TE G+II
Sbjct: 98 SRDLETAFAKIGRVQKASVMYDPHTRESRGFGFVTMETTEEAEAAISSLNGTELMGKIIT 157
Query: 63 VEKSK 67
+EK++
Sbjct: 158 IEKAR 162
>gi|390949102|ref|YP_006412861.1| RRM domain-containing RNA-binding protein [Thiocystis violascens
DSM 198]
gi|390425671|gb|AFL72736.1| RRM domain-containing RNA-binding protein [Thiocystis violascens
DSM 198]
Length = 90
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
RD ++ ++L++ DS GFGF+ + + +ADAAI+ L+ET GR + V ++
Sbjct: 18 RDAFGAYGEISSVNLITDKFTGDSKGFGFVEMPNNAEADAAIKGLNETPLKGRNLKVNQA 77
Query: 67 KS 68
K
Sbjct: 78 KP 79
>gi|381160580|ref|ZP_09869812.1| RRM domain-containing RNA-binding protein [Thiorhodovibrio sp.
970]
gi|380878644|gb|EIC20736.1| RRM domain-containing RNA-binding protein [Thiorhodovibrio sp.
970]
Length = 94
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
RD + Q+ +L++ DS GFGF+ + + +AD AI+ L+ET GR + V ++
Sbjct: 18 RDTFAAYGQVESANLITDKFTGDSKGFGFVEMPNNSEADTAIKALNETPLKGRPLRVNQA 77
Query: 67 KS 68
K
Sbjct: 78 KP 79
>gi|440793266|gb|ELR14453.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 273
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 3 GKASRDRE-------SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETE 55
G ASR RE SK ++++ L+ DS GF F+++ D +A A+ + TE
Sbjct: 107 GLASRTREADLERKFSKFGEVVKAHLVCDPRTGDSRGFAFVTMGSDTEAQDAMEGGNRTE 166
Query: 56 WNGRIIHVEKSK 67
+GRII VEKSK
Sbjct: 167 LDGRIISVEKSK 178
>gi|148927167|ref|ZP_01810792.1| RNP-1 like RNA-binding protein [candidate division TM7 genomosp.
GTL1]
gi|147887382|gb|EDK72831.1| RNP-1 like RNA-binding protein [candidate division TM7 genomosp.
GTL1]
Length = 108
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF++ DEDAD AI+ LD +E +GR IHV +++
Sbjct: 43 SKGFGFVTYVNDEDADTAIKELDNSELDGRNIHVNEARP 81
>gi|381157372|ref|ZP_09866606.1| RRM domain-containing RNA-binding protein [Thiorhodovibrio sp.
970]
gi|380881235|gb|EIC23325.1| RRM domain-containing RNA-binding protein [Thiorhodovibrio sp.
970]
Length = 94
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 20 SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+L++ S GFGF+ + + +ADAAI+ L+ET GR I V ++K
Sbjct: 31 NLITDKFTGQSKGFGFVEMPNNSEADAAIKALNETPLKGRPIRVNQAKP 79
>gi|356536248|ref|XP_003536651.1| PREDICTED: uncharacterized RNA-binding protein C25G10.01-like
[Glycine max]
Length = 191
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 38/57 (66%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
SK +++ L+ ++S GFGF++++ ++DA+ I+ L+ + + GR+I VEK+K
Sbjct: 67 SKEGKVVDCHLVKDPHTKESRGFGFVTMETNDDAECCIKYLNRSVFEGRLITVEKAK 123
>gi|426200944|gb|EKV50867.1| hypothetical protein AGABI2DRAFT_189205 [Agaricus bisporus var.
bisporus H97]
Length = 276
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 40/57 (70%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+K ++ + S++ RDS GFGF++++ E+ADAAI L+ T+ G++++VE+++
Sbjct: 115 AKVGRVKKASVMHDPHTRDSRGFGFVTMETAEEADAAITALNATDLMGKVMNVERAR 171
>gi|409084002|gb|EKM84359.1| hypothetical protein AGABI1DRAFT_110889 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 277
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 40/57 (70%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+K ++ + S++ RDS GFGF++++ E+ADAAI L+ T+ G++++VE+++
Sbjct: 115 AKVGRVKKASVMHDPHTRDSRGFGFVTMETAEEADAAITALNATDLMGKVMNVERAR 171
>gi|392598035|gb|EIW87357.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 132
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 6 SRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIH 62
+RD E+ ++ R+ S++ +R+S GFGF++++ E+ADAAI L+ T+ G+ ++
Sbjct: 47 TRDLEAAFAKIGRVKKASVMYDPHSRESRGFGFVTMETAEEADAAITALNATDLMGKNMN 106
Query: 63 VEK 65
VEK
Sbjct: 107 VEK 109
>gi|336377048|gb|EGO05383.1| hypothetical protein SERLA73DRAFT_157931 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390092|gb|EGO31235.1| hypothetical protein SERLADRAFT_412645 [Serpula lacrymans var.
lacrymans S7.9]
Length = 260
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 39/57 (68%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+K ++ + S++ R+S GFGF++++ E+ADAAI L+ T+ G+ ++VEK++
Sbjct: 106 AKIGRVKKASVMYDPHTRESRGFGFVTMETGEEADAAITALNATDLMGKTMNVEKAR 162
>gi|168051480|ref|XP_001778182.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670395|gb|EDQ56964.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 172
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S+ ++L L+ R+S GFGF++++ EDA+ I+ L+ + GR+I VEK+K
Sbjct: 34 SREGKVLECRLVLDPRTRESRGFGFVTMEHLEDAERCIKYLNRSTLEGRMITVEKAK 90
>gi|67920522|ref|ZP_00514042.1| RNA-binding region RNP-1 (RNA recognition motif) [Crocosphaera
watsonii WH 8501]
gi|416377747|ref|ZP_11683649.1| RNA-binding protein [Crocosphaera watsonii WH 0003]
gi|67858006|gb|EAM53245.1| RNA-binding region RNP-1 (RNA recognition motif) [Crocosphaera
watsonii WH 8501]
gi|357266170|gb|EHJ14837.1| RNA-binding protein [Crocosphaera watsonii WH 0003]
Length = 94
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
R+SL + GFGF+ +D D++ AAI LD EW GR + V K+K
Sbjct: 29 RVSLPTDRETGKPRGFGFVEMDNDDEETAAIEELDGAEWLGRQMRVNKAKP 79
>gi|343427687|emb|CBQ71214.1| related to Transformer-2 protein homolog [Sporisorium reilianum
SRZ2]
Length = 341
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 3 GKASRDRES---KTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGR 59
G RD E K + + ++ +R+ GF F++ ++ EDA+AAI ++ TE+ GR
Sbjct: 83 GTTDRDLEEAFGKYGPIQKAQVMYDPHSREPRGFAFVTFEKAEDAEAAITAMNNTEFLGR 142
Query: 60 IIHVEKSK 67
I VEK++
Sbjct: 143 KITVEKAR 150
>gi|431931272|ref|YP_007244318.1| RRM domain-containing RNA-binding protein [Thioflavicoccus
mobilis 8321]
gi|431829575|gb|AGA90688.1| RRM domain-containing RNA-binding protein [Thioflavicoccus
mobilis 8321]
Length = 94
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 19 LSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+S+++ S GFGF+ + + +ADAAI+ L+ET GR I V +++
Sbjct: 30 VSVITDKFTGQSKGFGFVEMPNNSEADAAIKALNETPLKGRNIRVNEARP 79
>gi|431930897|ref|YP_007243943.1| RRM domain-containing RNA-binding protein [Thioflavicoccus
mobilis 8321]
gi|431829200|gb|AGA90313.1| RRM domain-containing RNA-binding protein [Thioflavicoccus
mobilis 8321]
Length = 90
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 39/62 (62%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
R+ S+ ++ +++++ L +S GFGF+ + + ADAAI+ L+ T+ NGR I V ++
Sbjct: 18 RETFSRFGEVSQVTVIMDRLTGESKGFGFVEMSSNSQADAAIKGLNGTDLNGRNITVNQA 77
Query: 67 KS 68
K
Sbjct: 78 KP 79
>gi|344338389|ref|ZP_08769321.1| RNP-1 like RNA-binding protein [Thiocapsa marina 5811]
gi|343801671|gb|EGV19613.1| RNP-1 like RNA-binding protein [Thiocapsa marina 5811]
Length = 90
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 19 LSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++L++ +S GFGF+ + + +ADAAI+ L+ET GR + V ++K
Sbjct: 30 VNLITDKFTGESKGFGFVEMPNNSEADAAIKGLNETPLKGRNLKVNQAKP 79
>gi|194332974|ref|YP_002014834.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM
271]
gi|194310792|gb|ACF45187.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM
271]
Length = 90
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ + DEDA+ AI +L++T++NGR I V ++
Sbjct: 41 SKGFGFVEMPNDEDAEKAIDSLNDTDFNGRTIKVNQA 77
>gi|297742216|emb|CBI34365.3| unnamed protein product [Vitis vinifera]
Length = 133
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65
+++ L++ R+S GFGF++++ EDAD I+ L+ + GR+I VEK
Sbjct: 79 KVVECHLVTDPRTRESRGFGFVTMETVEDADRCIKYLNRSVLEGRLITVEK 129
>gi|71013544|ref|XP_758617.1| hypothetical protein UM02470.1 [Ustilago maydis 521]
gi|46098275|gb|EAK83508.1| hypothetical protein UM02470.1 [Ustilago maydis 521]
Length = 405
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 32/45 (71%)
Query: 23 SKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S+ +R+ GF F++ ++ EDA+AAI ++ ++ GR IHVEK++
Sbjct: 137 SRKHSREPRGFAFVTFEKAEDAEAAITAMNGADFLGRKIHVEKAR 181
>gi|345870843|ref|ZP_08822793.1| RNP-1 like RNA-binding protein [Thiorhodococcus drewsii AZ1]
gi|343921312|gb|EGV32033.1| RNP-1 like RNA-binding protein [Thiorhodococcus drewsii AZ1]
Length = 90
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 13 TY-QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
TY ++ SL++ +S GFGF+ + + +ADAAI+ L+ET GR + V ++K
Sbjct: 23 TYGEISSASLITDKFTGNSKGFGFVEMSNNAEADAAIKGLNETPLKGRNMKVNEAKP 79
>gi|449455042|ref|XP_004145262.1| PREDICTED: uncharacterized protein LOC101211183 [Cucumis sativus]
gi|449470652|ref|XP_004153030.1| PREDICTED: uncharacterized protein LOC101208036 [Cucumis sativus]
gi|449474935|ref|XP_004154325.1| PREDICTED: uncharacterized protein LOC101221508 [Cucumis sativus]
Length = 367
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 35/51 (68%)
Query: 16 LLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+L + L++ L R+S GFGF+++ +++A+ I+ L+ + GRII VEK+
Sbjct: 68 VLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKA 118
>gi|147677171|ref|YP_001211386.1| hypothetical protein PTH_0836 [Pelotomaculum thermopropionicum
SI]
gi|146273268|dbj|BAF59017.1| hypothetical protein PTH_0836 [Pelotomaculum thermopropionicum
SI]
Length = 84
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + RDEDAD I ++ TE+NGRII V ++K
Sbjct: 43 SRGFGFVEV-RDEDADIMIAAMNGTEFNGRIITVNEAKP 80
>gi|158828228|gb|ABW81106.1| putRNAbp29 [Cleome spinosa]
Length = 338
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
SK +++ ++L+ R+S GFGF++++ EDA+ I+ LD + GRII VEK+
Sbjct: 65 SKEGKVVDVNLVLDPWTRESRGFGFVTMENMEDANRCIKYLDRSVLEGRIITVEKA 120
>gi|288940038|ref|YP_003442278.1| RNP-1 like RNA-binding protein [Allochromatium vinosum DSM 180]
gi|288895410|gb|ADC61246.1| RNP-1 like RNA-binding protein [Allochromatium vinosum DSM 180]
Length = 91
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
RD ++ ++L++ S GFGF+ + + +ADAAI+ L+ET GR + V ++
Sbjct: 18 RDAFGAYGEISSVNLITDKFTGSSKGFGFVEMPNNSEADAAIKGLNETPLKGRNLKVNQA 77
Query: 67 KS 68
K
Sbjct: 78 KP 79
>gi|162312534|ref|XP_001713104.1| RNA-binding protein [Schizosaccharomyces pombe 972h-]
gi|1723533|sp|Q10422.1|YDC1_SCHPO RecName: Full=Uncharacterized RNA-binding protein C25G10.01
gi|159884012|emb|CAB16378.2| RNA-binding protein [Schizosaccharomyces pombe]
Length = 297
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
Query: 3 GKASRDRESKTYQLL-------RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETE 55
G ASR +E + Q+ + ++ + + + S GFGFLS E+A +AI L+ E
Sbjct: 107 GIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQE 166
Query: 56 WNGRIIHVEKSK 67
+ GR+++V+K+K
Sbjct: 167 FYGRVLNVQKAK 178
>gi|428313428|ref|YP_007124405.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
gi|428255040|gb|AFZ20999.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
Length = 93
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ ++ + + DAAI+ LD EW GR + V K+K
Sbjct: 41 SRGFGFVEMETEAEEDAAIQELDGAEWMGRSLKVNKAKP 79
>gi|15292733|gb|AAK92735.1| putative transformer-SR ribonucleoprotein [Arabidopsis thaliana]
Length = 352
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 28 RDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
R+S GFGF+S+ DA+ IR+LD + GR+I VEK+
Sbjct: 83 RESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKA 121
>gi|345870896|ref|ZP_08822845.1| RNP-1 like RNA-binding protein [Thiorhodococcus drewsii AZ1]
gi|343921050|gb|EGV31774.1| RNP-1 like RNA-binding protein [Thiorhodococcus drewsii AZ1]
Length = 90
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++ +++L+S S GFGF+ + + ADAAI+ L+ T+ GR I V ++K
Sbjct: 26 EVAQVNLISDKFTGQSKGFGFVEMPNNSHADAAIKGLNGTDLQGRSIKVNEAKP 79
>gi|168009367|ref|XP_001757377.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691500|gb|EDQ77862.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 113
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65
S+ ++L L+ R+S GFGF++++ EDA+ I+ L+ + GRII VEK
Sbjct: 59 SQEGKVLECRLVLDPRTRESRGFGFVTMEHLEDAERCIKYLNRSTLEGRIITVEK 113
>gi|126660168|ref|ZP_01731286.1| RNA binding protein [Cyanothece sp. CCY0110]
gi|126618533|gb|EAZ89284.1| RNA binding protein [Cyanothece sp. CCY0110]
Length = 98
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
R+SL + GFGF+ ++ D++ AAI TLD +W GR + V K+K
Sbjct: 29 RVSLPTDRETGRPRGFGFVEMESDDEETAAIETLDGADWMGRQMRVNKAKP 79
>gi|224074996|ref|XP_002304510.1| predicted protein [Populus trichocarpa]
gi|222841942|gb|EEE79489.1| predicted protein [Populus trichocarpa]
Length = 208
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
++L L++ R+S GF F++++ EDA+ ++ L+ + GR+I VEK+K
Sbjct: 73 KVLECHLVTDPRTRESRGFAFVTMETVEDANRCVKYLNRSVLEGRVITVEKAK 125
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 22 LSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LSK S GFGF++ + E A AA+ TL +TE NGR ++V +++
Sbjct: 259 LSKDEEGKSRGFGFVNFESHEQAAAAVETLHDTEINGRKLYVARAQ 304
>gi|443477523|ref|ZP_21067364.1| RNP-1 like RNA-binding protein [Pseudanabaena biceps PCC 7429]
gi|443017338|gb|ELS31803.1| RNP-1 like RNA-binding protein [Pseudanabaena biceps PCC 7429]
Length = 111
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ GF F+ + +D + DAAI LD EW GR++ V K+K
Sbjct: 41 ARGFAFVEMSQDAEEDAAITALDGAEWMGRVLKVNKAKP 79
>gi|30680096|ref|NP_849605.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|15450753|gb|AAK96648.1| At1g07350/F22G5_25 [Arabidopsis thaliana]
gi|332189992|gb|AEE28113.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 129
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 8 DRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65
D +K ++ + L+ R+S GFGF+S+ DA+ IR+LD + GR+I VEK
Sbjct: 63 DHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 120
>gi|304311883|ref|YP_003811481.1| RNA-binding region RNP-1 (RNA recognition motif) [gamma
proteobacterium HdN1]
gi|301797616|emb|CBL45837.1| RNA-binding region RNP-1 (RNA recognition motif) [gamma
proteobacterium HdN1]
Length = 92
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++ +SL+ S GFGF+ + + +ADAAI+ +++ GR I V ++K
Sbjct: 26 EVASVSLIKDKFTGQSKGFGFVEMPNNSEADAAIKGMNDKPLKGRPIKVNQAKP 79
>gi|288942469|ref|YP_003444709.1| RNP-1 like RNA-binding protein [Allochromatium vinosum DSM 180]
gi|288897841|gb|ADC63677.1| RNP-1 like RNA-binding protein [Allochromatium vinosum DSM 180]
Length = 94
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 20 SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+L++ DS GF F+ + + +ADAAI+ L+ET GR + V ++K
Sbjct: 31 NLITDKFTGDSKGFAFVEMPSNSEADAAIKGLNETPLKGRPLRVNQAKP 79
>gi|240281085|gb|EER44588.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
Length = 134
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 12 KTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+ + R+ + + NR S GFGF+ D +ADAA+ + E++GR+I V+K+
Sbjct: 10 RRHPACRIVVKDRDTNR-SRGFGFVRFASDAEADAAMNAMSNQEFDGRVIRVDKA 63
>gi|356524435|ref|XP_003530834.1| PREDICTED: uncharacterized protein LOC100805126 [Glycine max]
Length = 362
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 35/53 (66%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+++ + L+ R+S GFGF++++ E+AD ++ L+ + GR+I VEK+K
Sbjct: 73 KVIDVHLVVDPWTRESRGFGFVTMETLEEADRCVKYLNRSVLEGRVITVEKAK 125
>gi|167383625|ref|XP_001736605.1| cold-inducible RNA-binding protein [Entamoeba dispar SAW760]
gi|165900936|gb|EDR27150.1| cold-inducible RNA-binding protein, putative [Entamoeba dispar
SAW760]
Length = 138
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF++ ++DEDA AI ++E E GR I V+ SK
Sbjct: 42 SKGFGFVTFEKDEDAKKAIEEMNEQELEGRRIKVDVSKP 80
>gi|172035929|ref|YP_001802430.1| RNA-binding protein [Cyanothece sp. ATCC 51142]
gi|354556024|ref|ZP_08975322.1| RNP-1 like RNA-binding protein [Cyanothece sp. ATCC 51472]
gi|171697383|gb|ACB50364.1| RNA-binding protein [Cyanothece sp. ATCC 51142]
gi|353552023|gb|EHC21421.1| RNP-1 like RNA-binding protein [Cyanothece sp. ATCC 51472]
Length = 98
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
R+SL + GFGF+ ++ D+ AAI TLD +W GR + V K+K
Sbjct: 29 RVSLPTDRETGRPRGFGFVEMESDDQETAAIETLDGADWMGRQMRVNKAKP 79
>gi|381207415|ref|ZP_09914486.1| RNA-binding region RNP-1 (RNA recognition motif) [SAR324 cluster
bacterium JCVI-SC AAA005]
Length = 117
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
RD + ++ ++S++ + S GFGF+ + D +A+AAIR L+E NGR + V
Sbjct: 44 RDAFGQFGEVDKVSIIMDRMTGRSKGFGFVEMQDDSEAEAAIRGLNEQPINGRAVRV 100
>gi|288940058|ref|YP_003442298.1| RNP-1 like RNA-binding protein [Allochromatium vinosum DSM 180]
gi|288895430|gb|ADC61266.1| RNP-1 like RNA-binding protein [Allochromatium vinosum DSM 180]
Length = 92
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+L ++ + S GFGF+ + + +ADAAI+ L+ETE GR + V +++
Sbjct: 26 ELASAEVIKDKFSGQSKGFGFVDMPNNSEADAAIKALNETEMKGRKLTVNEARP 79
>gi|449541621|gb|EMD32604.1| hypothetical protein CERSUDRAFT_77305 [Ceriporiopsis subvermispora
B]
Length = 261
Score = 42.0 bits (97), Expect = 0.050, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 6 SRDRES---KTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIH 62
+RD E+ K ++ + ++ R+S GFGF++++ E+ADAAI L+ TE G+ +
Sbjct: 99 TRDLEAAFAKIGRVQKAQVMYDPHTRESRGFGFVTMESAEEADAAITALNATELMGKTMT 158
Query: 63 VEKSK 67
VEK++
Sbjct: 159 VEKAR 163
>gi|344339676|ref|ZP_08770604.1| RNP-1 like RNA-binding protein [Thiocapsa marina 5811]
gi|343800412|gb|EGV18358.1| RNP-1 like RNA-binding protein [Thiocapsa marina 5811]
Length = 91
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
RD + +L ++ + S GFGF+ + + +ADAAI+ L+ET++ GR + V ++
Sbjct: 18 RDVFGQYGELAAAEVIKDKFSGQSKGFGFVDMPNNSEADAAIKALNETDFKGRKLTVNEA 77
Query: 67 KS 68
+
Sbjct: 78 RP 79
>gi|297745954|emb|CBI16010.3| unnamed protein product [Vitis vinifera]
Length = 198
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 21 LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65
L++ R+S GFGF+++ E+A+ I+ LD + GR+I VEK
Sbjct: 80 LVTDPWTRESRGFGFVTMSTVEEANRCIKYLDRSVLEGRVITVEK 124
>gi|357123127|ref|XP_003563264.1| PREDICTED: uncharacterized RNA-binding protein C25G10.01-like
[Brachypodium distachyon]
Length = 272
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 8 DRESKTY-----QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIH 62
DRE K Y +++ ++ + R S GF F+++D EDA+ I+ L+++E GR I
Sbjct: 79 DRELKDYFNKEGKVVSCHVVLEPHTRVSRGFAFITMDTVEDAERCIKYLNQSELQGRHIT 138
Query: 63 VEKSK 67
VEKS+
Sbjct: 139 VEKSR 143
>gi|428210908|ref|YP_007084052.1| RRM domain-containing RNA-binding protein [Oscillatoria acuminata
PCC 6304]
gi|427999289|gb|AFY80132.1| RRM domain-containing RNA-binding protein [Oscillatoria acuminata
PCC 6304]
Length = 109
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
R++L + GFGF+ +D D + AAI LD EW GR + V K+K
Sbjct: 29 RVNLPTDRETGRPRGFGFVEMDTDAEETAAIEALDGAEWMGRDLKVNKAKP 79
>gi|78189511|ref|YP_379849.1| RNA recognition motif-containing protein [Chlorobium
chlorochromatii CaD3]
gi|78171710|gb|ABB28806.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
chlorochromatii CaD3]
Length = 90
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
RD + Q+ S+++ + S GFGF+ + D +A AI ++E E NGR I V ++
Sbjct: 18 RDAFGQFGQVESASIITDKFSGRSKGFGFVDMPNDSEAREAIGAMNEKELNGRPIKVNEA 77
Query: 67 KS 68
K
Sbjct: 78 KP 79
>gi|406994267|gb|EKE13283.1| hypothetical protein ACD_13C00045G0007 [uncultured bacterium]
Length = 134
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 36/58 (62%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S++ ++ +++ + S GFGF+ ++ E+A AI +L+ETE+ GR + V ++K
Sbjct: 24 SESGTVVSATVIMDKMTGQSKGFGFVEMETTEEAAKAISSLNETEFGGRTLIVAEAKP 81
>gi|449510738|ref|XP_004163746.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101230062 [Cucumis sativus]
Length = 369
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 16 LLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
+L + L++ L R+S GFGF+++ +++A+ I+ L+ + GRII VE
Sbjct: 68 VLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVE 116
>gi|8778550|gb|AAF79558.1|AC022464_16 F22G5.31 [Arabidopsis thaliana]
Length = 415
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 9 RESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+E K + + L+ R+S GFGF+S+ DA+ IR+LD + GR+I VEK+
Sbjct: 129 KEGKVVDVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKA 186
>gi|443478888|ref|ZP_21068579.1| RNP-1 like RNA-binding protein [Pseudanabaena biceps PCC 7429]
gi|443015762|gb|ELS30586.1| RNP-1 like RNA-binding protein [Pseudanabaena biceps PCC 7429]
Length = 109
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ + +++ DAAI LDE EW GR + V K+K
Sbjct: 43 GFAFVEMTEEKEEDAAIVALDEAEWMGRALKVNKAKP 79
>gi|224106315|ref|XP_002314126.1| predicted protein [Populus trichocarpa]
gi|222850534|gb|EEE88081.1| predicted protein [Populus trichocarpa]
Length = 316
Score = 41.2 bits (95), Expect = 0.070, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 16 LLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
++ + L+ R+S GFGF+++ E+AD I+ LD + GR+I VEK+K
Sbjct: 78 VIDVHLVVDPWTRESRGFGFVTMSTVEEADHCIKYLDRSVLEGRVITVEKAK 129
>gi|67924769|ref|ZP_00518171.1| RNA-binding region RNP-1 (RNA recognition motif) [Crocosphaera
watsonii WH 8501]
gi|416405804|ref|ZP_11687965.1| RNA-binding region RNP-1 [Crocosphaera watsonii WH 0003]
gi|67853394|gb|EAM48751.1| RNA-binding region RNP-1 (RNA recognition motif) [Crocosphaera
watsonii WH 8501]
gi|357261220|gb|EHJ10516.1| RNA-binding region RNP-1 [Crocosphaera watsonii WH 0003]
Length = 94
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
R+ LL+ GFGF+ +D + + ++AI LD EW GR + V K++
Sbjct: 29 RVQLLTDRETGRPRGFGFVEMDTETEEESAIEALDGAEWMGRALRVNKARP 79
>gi|427714064|ref|YP_007062688.1| RRM domain-containing RNA-binding protein [Synechococcus sp. PCC
6312]
gi|427378193|gb|AFY62145.1| RRM domain-containing RNA-binding protein [Synechococcus sp. PCC
6312]
Length = 103
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ ++ D + DAAI LD EW GR + V K++
Sbjct: 43 GFGFVEMNADAEEDAAISALDGAEWMGRSLKVNKARP 79
>gi|427731667|ref|YP_007077904.1| RRM domain-containing RNA-binding protein [Nostoc sp. PCC 7524]
gi|427367586|gb|AFY50307.1| RRM domain-containing RNA-binding protein [Nostoc sp. PCC 7524]
Length = 103
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ ++ DAAI+ LD EW GR++ V K++
Sbjct: 43 GFGFVEMESSAAEDAAIQALDGAEWMGRVMKVNKARP 79
>gi|320169942|gb|EFW46841.1| hypothetical protein CAOG_04799 [Capsaspora owczarzaki ATCC 30864]
Length = 313
Score = 41.2 bits (95), Expect = 0.074, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65
+++R ++ DS GF F+ ++ +E A AAIR TE++GR I VEK
Sbjct: 83 KVVRCDVVRDPHTNDSRGFAFIGMENEEQAHAAIRGCHRTEFDGRTISVEK 133
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 41.2 bits (95), Expect = 0.075, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF++ + EDA A+ TL+ETE NG+ ++V +++
Sbjct: 259 SKGFGFINFENYEDAHKAVDTLNETEHNGKTLYVARAQ 296
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NGR I+V +++
Sbjct: 231 SKGFGFVSFERHEDAQKAVDEMNTKELNGRAIYVGRAQ 268
>gi|408391758|gb|EKJ71126.1| hypothetical protein FPSE_08632 [Fusarium pseudograminearum CS3096]
Length = 770
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
S+ Y + +++ ++S G+GF++L EDA A + LD+ +WNGR I ++
Sbjct: 63 SQHYPVKHATVVVDQKTKESRGYGFVTLADAEDAVEAKKALDKQDWNGRRIRID 116
>gi|354568572|ref|ZP_08987736.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
gi|353540295|gb|EHC09772.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
Length = 104
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 16 LLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ R+ L + S GFGF+ ++ + AAI LD EW GR++ V K++
Sbjct: 27 VTRVQLPTDRETGRSRGFGFVEMESEAAETAAINALDGAEWKGRVMKVNKARP 79
>gi|46111259|ref|XP_382687.1| hypothetical protein FG02511.1 [Gibberella zeae PH-1]
Length = 767
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
S+ Y + +++ ++S G+GF++L EDA A + LD+ +WNGR I ++
Sbjct: 63 SQHYPVKHATVVVDQKTKESRGYGFVTLADAEDAVEAKKALDKQDWNGRRIRID 116
>gi|333379577|ref|ZP_08471298.1| hypothetical protein HMPREF9456_02893 [Dysgonomonas mossii DSM
22836]
gi|332884970|gb|EGK05223.1| hypothetical protein HMPREF9456_02893 [Dysgonomonas mossii DSM
22836]
Length = 99
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 21 LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
++ +S +R S G+GF+ +D +EDA+ AI L+ E++GR I V +++
Sbjct: 33 IMDRSTSR-SKGYGFVEMDNNEDANKAISKLNGVEYDGRTISVSEAR 78
>gi|425455329|ref|ZP_18835049.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC
9807]
gi|389803795|emb|CCI17308.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC
9807]
Length = 100
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 16 LLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++R+ L GFGF+ + DE+ AI TLD EW GR + V K++
Sbjct: 27 VVRVYLPVDQATGKMRGFGFVEMSSDEEEAKAIETLDGAEWMGRQMKVNKARP 79
>gi|328855010|gb|EGG04139.1| hypothetical protein MELLADRAFT_78422 [Melampsora larici-populina
98AG31]
Length = 325
Score = 41.2 bits (95), Expect = 0.084, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 29/38 (76%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S G+GF++ D+ EDA+ A+ +D+TE +GR ++VE +K
Sbjct: 73 SLGYGFVTFDKAEDAEKAVAAIDKTEIDGRTVNVEIAK 110
>gi|17230269|ref|NP_486817.1| RNA binding protein [Nostoc sp. PCC 7120]
gi|81859084|sp|Q9WX37.3|RBPE_NOSS1 RecName: Full=Putative RNA-binding protein RbpE
gi|4850342|dbj|BAA77711.1| RNA binding protein [Anabaena variabilis]
gi|17131870|dbj|BAB74476.1| RNA binding protein [Nostoc sp. PCC 7120]
Length = 99
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ ++ DAAI+ LD EW GR++ V K++
Sbjct: 43 GFGFVEMESSAAEDAAIQALDGAEWMGRVLKVNKARP 79
>gi|75906252|ref|YP_320548.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
gi|75699977|gb|ABA19653.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
Length = 99
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ ++ DAAI+ LD EW GR++ V K++
Sbjct: 43 GFGFVEMESSAAEDAAIQALDGAEWMGRVLKVNKARP 79
>gi|260892116|ref|YP_003238213.1| RNP-1 like RNA-binding protein [Ammonifex degensii KC4]
gi|260864257|gb|ACX51363.1| RNP-1 like RNA-binding protein [Ammonifex degensii KC4]
Length = 87
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+ + RDEDA+A IR L+ E+ GR++ V +++
Sbjct: 43 SRGFGFVEV-RDEDAEAMIRALNGAEYGGRVLVVNEAR 79
>gi|255537535|ref|XP_002509834.1| Arginine/serine-rich-splicing factor, putative [Ricinus communis]
gi|223549733|gb|EEF51221.1| Arginine/serine-rich-splicing factor, putative [Ricinus communis]
Length = 204
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
++L L++ R+S GF F++++ EDA+ ++ L+ + GR+I VEK+K
Sbjct: 72 KVLECHLVTDPRTRESRGFAFVTMETLEDAERCVKYLNRSVLEGRLITVEKAK 124
>gi|427419212|ref|ZP_18909395.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
gi|425761925|gb|EKV02778.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
Length = 90
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D + DAAI LD EW GR + V K+K
Sbjct: 43 GFGFVEMSTDSEEDAAIEALDGAEWMGRDLKVNKAKP 79
>gi|334120717|ref|ZP_08494795.1| RNP-1 like RNA-binding protein [Microcoleus vaginatus FGP-2]
gi|333455989|gb|EGK84627.1| RNP-1 like RNA-binding protein [Microcoleus vaginatus FGP-2]
Length = 110
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
R+ L + GFGF+ + D + DAAI LD EW GR + V K+K
Sbjct: 29 RVHLPTDRETSRPRGFGFVEMSTDAEEDAAISALDGAEWMGRDLKVNKAKP 79
>gi|428319314|ref|YP_007117196.1| RNP-1 like RNA-binding protein [Oscillatoria nigro-viridis PCC
7112]
gi|428242994|gb|AFZ08780.1| RNP-1 like RNA-binding protein [Oscillatoria nigro-viridis PCC
7112]
Length = 108
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
R+ L + GFGF+ + D + DAAI LD EW GR + V K+K
Sbjct: 29 RVHLPTDRETSRPRGFGFVEMSTDAEEDAAISALDGAEWMGRDLKVNKAKP 79
>gi|452989179|gb|EME88934.1| hypothetical protein MYCFIDRAFT_25441 [Pseudocercospora fijiensis
CIRAD86]
Length = 149
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 15 QLLRLSLLSKSL--NRDSH-GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+++ +SL L N+D H GFG++ EDA AI +D++E GR+I V ++K
Sbjct: 34 EIVDVSLPKPELASNKDPHRGFGYVEFSLAEDAREAIDNMDQSELYGRVIKVNQAKP 90
>gi|395334965|gb|EJF67341.1| hypothetical protein DICSQDRAFT_46822 [Dichomitus squalens
LYAD-421 SS1]
Length = 102
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 6 SRDRES---KTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIH 62
+RD E+ K ++ + ++ R+S GFGF++++ E+ADAAI ++ + G+ I
Sbjct: 25 TRDLEAAFAKCGRVQKAQVMYDPHTRESRGFGFVTMESVEEADAAITAMNGADLMGKAIS 84
Query: 63 VEKSKS 68
VE+ ++
Sbjct: 85 VERVRA 90
>gi|344342838|ref|ZP_08773708.1| RNP-1 like RNA-binding protein [Marichromatium purpuratum 984]
gi|343805390|gb|EGV23286.1| RNP-1 like RNA-binding protein [Marichromatium purpuratum 984]
Length = 90
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%)
Query: 19 LSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++L++ +S GFGF+ + + +AD AI+ L++T GR + V ++K
Sbjct: 30 VNLITDKFTGESKGFGFVEMPNNSEADTAIKALNDTPLKGRNMKVNQAKP 79
>gi|16330189|ref|NP_440917.1| RNA-binding protein [Synechocystis sp. PCC 6803]
gi|383321932|ref|YP_005382785.1| RNA-binding protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325101|ref|YP_005385954.1| RNA-binding protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383490985|ref|YP_005408661.1| RNA-binding protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436252|ref|YP_005650976.1| RNA-binding protein [Synechocystis sp. PCC 6803]
gi|451814348|ref|YP_007450800.1| RNA-binding protein [Synechocystis sp. PCC 6803]
gi|1652677|dbj|BAA17597.1| RNA-binding protein [Synechocystis sp. PCC 6803]
gi|339273284|dbj|BAK49771.1| RNA-binding protein [Synechocystis sp. PCC 6803]
gi|359271251|dbj|BAL28770.1| RNA-binding protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274421|dbj|BAL31939.1| RNA-binding protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359277591|dbj|BAL35108.1| RNA-binding protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407958098|dbj|BAM51338.1| RNA-binding protein [Synechocystis sp. PCC 6803]
gi|451780317|gb|AGF51286.1| RNA-binding protein [Synechocystis sp. PCC 6803]
Length = 83
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D++ DAAI LD EW GR + V K++
Sbjct: 42 RGFGFVEMSSDKEEDAAIEALDGAEWMGRDLKVNKARP 79
>gi|425447147|ref|ZP_18827139.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC
9443]
gi|389732378|emb|CCI03686.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC
9443]
Length = 100
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 16 LLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++R+ L GFGF+ + DE+ AI TLD EW GR + V K++
Sbjct: 27 VVRVYLPVDQATGKMRGFGFVEMSSDEEEAKAIETLDGAEWMGRQMKVNKARP 79
>gi|225680987|gb|EEH19271.1| conserved hypothetical protein [Paracoccidioides brasiliensis
Pb03]
gi|226292701|gb|EEH48121.1| conserved hypothetical protein [Paracoccidioides brasiliensis
Pb18]
Length = 148
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ RD +ADAA+ + E++GR+I V+K+
Sbjct: 42 SRGFGFVRFSRDVEADAAMNAMSNQEFDGRVIRVDKA 78
>gi|390437867|ref|ZP_10226380.1| putative RNA-binding protein rbpF [Microcystis sp. T1-4]
gi|389838700|emb|CCI30504.1| putative RNA-binding protein rbpF [Microcystis sp. T1-4]
Length = 100
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + DE+ AI TL+E EW GR + V K++
Sbjct: 43 GFGFVEMSSDEEEAKAIETLNEAEWMGRKMRVNKARP 79
>gi|392397594|ref|YP_006434195.1| RRM domain-containing RNA-binding protein [Flexibacter litoralis
DSM 6794]
gi|390528672|gb|AFM04402.1| RRM domain-containing RNA-binding protein [Flexibacter litoralis
DSM 6794]
Length = 97
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 28 RDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
R S GFGF+ ++ +ED +AAI L+ E GR I V+K+
Sbjct: 39 RRSRGFGFVEMESEEDGEAAIEELNGVELKGREIQVKKA 77
>gi|260790117|ref|XP_002590090.1| hypothetical protein BRAFLDRAFT_83361 [Branchiostoma floridae]
gi|229275278|gb|EEN46101.1| hypothetical protein BRAFLDRAFT_83361 [Branchiostoma floridae]
Length = 326
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+GF+ +D ++DA+ AI+ L TEW G I VE SKS
Sbjct: 56 YGFVHMDNEQDANDAIKALTNTEWMGTRITVEMSKS 91
>gi|384488552|gb|EIE80732.1| hypothetical protein RO3G_05437 [Rhizopus delemar RA 99-880]
Length = 238
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 35/55 (63%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
++++ ++ R+S GFGF+ + EDA+ A+ + TE +GR++ VEK+K +
Sbjct: 86 KVIKAEIMYDPHTRESRGFGFIRMANAEDAERALNGVSGTEIDGRVVTVEKAKRS 140
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S +R EDA A+ ++ E NG++I+V +++
Sbjct: 227 NGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQ 267
>gi|428773895|ref|YP_007165683.1| RNP-1 like RNA-binding protein [Cyanobacterium stanieri PCC 7202]
gi|428688174|gb|AFZ48034.1| RNP-1 like RNA-binding protein [Cyanobacterium stanieri PCC 7202]
Length = 90
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
Q+ R+ L + GFGF+ + D + + AI TLD +W GR + V K+K
Sbjct: 26 QVKRVYLPVDRETKRMRGFGFVEMSSDSEEETAIETLDGAQWMGRQMKVNKAKP 79
>gi|333977917|ref|YP_004515862.1| RNP-1 like RNA-binding protein [Desulfotomaculum kuznetsovii DSM
6115]
gi|333821398|gb|AEG14061.1| RNP-1 like RNA-binding protein [Desulfotomaculum kuznetsovii DSM
6115]
Length = 85
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + D+DADA I L+ TE+NGR+I V +++
Sbjct: 43 SRGFGFVEVA-DKDADAIIAALNGTEFNGRVITVNEARP 80
>gi|223938031|ref|ZP_03629929.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223893245|gb|EEF59708.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 114
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 31/50 (62%)
Query: 19 LSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++L+ + + GFGF+++ E ADAA++ L+ +W GR + V +++
Sbjct: 31 VNLIMDKMTGRARGFGFVTMSTKEGADAAVQNLNGKQWQGRALTVNEARP 80
>gi|218438646|ref|YP_002376975.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7424]
gi|218171374|gb|ACK70107.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7424]
Length = 105
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D + D AI TLD EW GR + V K++
Sbjct: 43 GFGFVEMSTDAEEDTAIETLDGAEWMGRQLKVNKARP 79
>gi|398411624|ref|XP_003857150.1| hypothetical protein MYCGRDRAFT_66798 [Zymoseptoria tritici
IPO323]
gi|339477035|gb|EGP92126.1| hypothetical protein MYCGRDRAFT_66798 [Zymoseptoria tritici
IPO323]
Length = 147
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 17 LRLSLLSKSLNRDSH-GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ L + NRD H GFG++ EDA AI +D+ E GR+I V ++K
Sbjct: 38 VSLPKPEQQSNRDPHRGFGYVEFSLAEDAREAIDNMDQAELYGRVIKVNQAKP 90
>gi|255573485|ref|XP_002527668.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223532973|gb|EEF34739.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 278
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%)
Query: 24 KSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
K N S GF F++L E+A AAI LD E +GRII VE +K
Sbjct: 116 KQKNGRSRGFAFVTLASGEEAQAAIDKLDSHEVSGRIIRVEFAK 159
>gi|307155022|ref|YP_003890406.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7822]
gi|306985250|gb|ADN17131.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7822]
Length = 109
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D++ D AI TLD EW GR + V K++
Sbjct: 43 GFGFVEMSTDDEEDKAIETLDGAEWMGRQLKVNKARP 79
>gi|186681280|ref|YP_001864476.1| RNP-1 like RNA-binding protein [Nostoc punctiforme PCC 73102]
gi|186463732|gb|ACC79533.1| RNP-1 like RNA-binding protein [Nostoc punctiforme PCC 73102]
Length = 100
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ ++ D AAI LD EW GR + V K+K
Sbjct: 43 GFGFVEMESDAQETAAIEALDNAEWMGRSLKVNKAKP 79
>gi|411117881|ref|ZP_11390262.1| RRM domain-containing RNA-binding protein [Oscillatoriales
cyanobacterium JSC-12]
gi|410711605|gb|EKQ69111.1| RRM domain-containing RNA-binding protein [Oscillatoriales
cyanobacterium JSC-12]
Length = 100
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D + DAAI LD EW GR + V K+K
Sbjct: 42 RGFGFVEMSADAEEDAAIDALDGAEWMGRDLKVNKAKP 79
>gi|16332012|ref|NP_442740.1| RNA binding protein [Synechocystis sp. PCC 6803]
gi|383323755|ref|YP_005384609.1| RNA binding protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383326924|ref|YP_005387778.1| RNA binding protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383492808|ref|YP_005410485.1| RNA binding protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384438076|ref|YP_005652801.1| RNA binding protein [Synechocystis sp. PCC 6803]
gi|451816164|ref|YP_007452616.1| RNA binding protein [Synechocystis sp. PCC 6803]
gi|15214210|sp|Q57014.3|RBPA_SYNY3 RecName: Full=Putative RNA-binding protein RbpA
gi|1001324|dbj|BAA10811.1| RNA binding protein [Synechocystis sp. PCC 6803]
gi|1161274|gb|AAA85379.1| RNA binding protein [Synechocystis sp. PCC 6803]
gi|339275109|dbj|BAK51596.1| RNA binding protein [Synechocystis sp. PCC 6803]
gi|359273075|dbj|BAL30594.1| RNA binding protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359276245|dbj|BAL33763.1| RNA binding protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359279415|dbj|BAL36932.1| RNA binding protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407960353|dbj|BAM53593.1| RNA binding protein [Synechocystis sp. PCC 6803]
gi|451782133|gb|AGF53102.1| RNA binding protein [Synechocystis sp. PCC 6803]
Length = 101
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ L+ D + AAI LD EW GR + V K+K
Sbjct: 43 GFGFVELEADAEETAAIEALDGAEWMGRDLKVNKAKP 79
>gi|428221461|ref|YP_007105631.1| RRM domain-containing RNA-binding protein [Synechococcus sp. PCC
7502]
gi|427994801|gb|AFY73496.1| RRM domain-containing RNA-binding protein [Synechococcus sp. PCC
7502]
Length = 101
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ ++ D + +AAI LD EW GR + V K+K
Sbjct: 43 GFGFVEMNTDAEEEAAISALDGAEWMGRDLKVNKAKP 79
>gi|434395383|ref|YP_007130330.1| RNP-1 like RNA-binding protein [Gloeocapsa sp. PCC 7428]
gi|428267224|gb|AFZ33170.1| RNP-1 like RNA-binding protein [Gloeocapsa sp. PCC 7428]
Length = 101
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ +D + + D AI LD EW GR + V K+K
Sbjct: 43 GFGFVEMDTEAEEDLAIDALDGAEWMGRTLRVNKAKP 79
>gi|194334049|ref|YP_002015909.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM
271]
gi|194311867|gb|ACF46262.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM
271]
Length = 90
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + +DA+ AI +L++T+ NGR I V ++K
Sbjct: 41 SKGFGFVEMSSSDDANEAIESLNDTDLNGRTIKVNEAKP 79
>gi|1781299|emb|CAA70700.1| transformer-SR ribonucleoprotein [Nicotiana tabacum]
Length = 235
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 21 LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
L+ + +R S GF F+++D EDA+ I+ L+++ GR I VEKS+
Sbjct: 97 LVVEPRSRISRGFAFITMDSLEDANRCIKHLNQSVLEGRYITVEKSR 143
>gi|384493509|gb|EIE84000.1| hypothetical protein RO3G_08705 [Rhizopus delemar RA 99-880]
Length = 624
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF++ + EDA A+ L+ETE G+I++V +++
Sbjct: 264 SKGFGFVNFENHEDAQKAVDALNETEHKGKILYVARAQ 301
>gi|427714396|ref|YP_007063020.1| RRM domain-containing RNA-binding protein [Synechococcus sp. PCC
6312]
gi|427378525|gb|AFY62477.1| RRM domain-containing RNA-binding protein [Synechococcus sp. PCC
6312]
Length = 91
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 25 SLNRDS---HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++RD+ GFGF+ + D + DAAI LD EW GR + V K++
Sbjct: 33 PVDRDTGRKRGFGFVEMSTDAEEDAAIAELDGAEWMGRQLKVNKARP 79
>gi|374376206|ref|ZP_09633864.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
gi|373233046|gb|EHP52841.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
Length = 110
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 21 LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++S S GFGF+ + DE+A AAI L+ TE +GR I V +S+
Sbjct: 32 IVSDKFTNRSKGFGFVEMATDEEAKAAIEALNGTEVDGRNIVVNESRP 79
>gi|20159727|gb|AAM11915.1| plastid-specific ribosomal protein 2 precursor [Deschampsia
antarctica]
Length = 114
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 21 LLSKSLNR-----DSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+LS +++R S GFGF++ DE+ +AA+ T + TE G+ I V ++
Sbjct: 64 VLSATVSRVPGTPKSKGFGFVTFSSDEEVEAAVSTFNNTELEGQAIRVNRA 114
>gi|346465793|gb|AEO32741.1| hypothetical protein [Amblyomma maculatum]
Length = 212
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+R+S GF F++++ EDAD ++ L+ + GR+I VEK+K
Sbjct: 91 SRESRGFAFVTMETVEDADRCVKHLNRSVLEGRLITVEKAK 131
>gi|302496006|ref|XP_003010008.1| hypothetical protein ARB_03747 [Arthroderma benhamiae CBS 112371]
gi|291173542|gb|EFE29368.1| hypothetical protein ARB_03747 [Arthroderma benhamiae CBS 112371]
Length = 224
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ D +ADAA+ ++ E++GR+I V+K+
Sbjct: 119 SRGFGFVRFSSDSEADAALTAMNNQEFDGRVIRVDKA 155
>gi|414079549|ref|YP_007000973.1| glycine-rich RNA-binding protein [Anabaena sp. 90]
gi|413972828|gb|AFW96916.1| glycine-rich RNA-binding protein [Anabaena sp. 90]
Length = 99
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D + AAI LD +EW GR + V K+K
Sbjct: 43 GFGFVEMSSDAEEQAAIAALDGSEWMGRSLKVNKAKP 79
>gi|424843086|ref|ZP_18267711.1| RRM domain-containing RNA-binding protein [Saprospira grandis DSM
2844]
gi|395321284|gb|EJF54205.1| RRM domain-containing RNA-binding protein [Saprospira grandis DSM
2844]
Length = 126
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + +ED AAI L+ETE++ R I V+K++
Sbjct: 41 SKGFGFVEMPDEEDGQAAIDALNETEFHERTIVVKKARP 79
>gi|379728946|ref|YP_005321142.1| rnp-1 like RNA-binding protein [Saprospira grandis str. Lewin]
gi|378574557|gb|AFC23558.1| rnp-1 like RNA-binding protein [Saprospira grandis str. Lewin]
Length = 122
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + +ED AAI L+ETE++ R I V+K++
Sbjct: 41 SKGFGFVEMPDEEDGQAAIDALNETEFHERTIVVKKARP 79
>gi|407033602|gb|EKE36900.1| RNA recognition motif (RRM, RBD, or RNP domain) containing
protein [Entamoeba nuttalli P19]
Length = 136
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF++ ++DEDA AI ++E E GR I V+ S+
Sbjct: 42 SKGFGFVTFEKDEDAKKAIEEMNEQELEGRRIKVDVSRP 80
>gi|323702365|ref|ZP_08114030.1| RNP-1 like RNA-binding protein [Desulfotomaculum nigrificans DSM
574]
gi|333924078|ref|YP_004497658.1| RNP-1 like RNA-binding protein [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|323532671|gb|EGB22545.1| RNP-1 like RNA-binding protein [Desulfotomaculum nigrificans DSM
574]
gi|333749639|gb|AEF94746.1| RNP-1 like RNA-binding protein [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 85
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + RDEDA+ I L+ TE GR+I V ++KS
Sbjct: 42 SRGFGFVEV-RDEDAEKMIAALNGTELGGRVITVNEAKS 79
>gi|406954527|gb|EKD83359.1| RNP-1 like protein RNA-binding protein, partial [uncultured
bacterium]
Length = 95
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + D A+ AI+ L+ET+ NGR I V +++
Sbjct: 41 SKGFGFVEMTNDAAAEEAIQALNETDMNGRNIKVNQARP 79
>gi|302759915|ref|XP_002963380.1| hypothetical protein SELMODRAFT_80254 [Selaginella
moellendorffii]
gi|300168648|gb|EFJ35251.1| hypothetical protein SELMODRAFT_80254 [Selaginella
moellendorffii]
Length = 161
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
SK +++ L+ + +S GFGF++L+ +DA+ I+ L + GRII VEK++
Sbjct: 43 SKEGKVVECRLVVDPRSHESRGFGFVALESLDDAERCIKRLHHSNLEGRIITVEKAR 99
>gi|225426196|ref|XP_002279684.1| PREDICTED: uncharacterized RNA-binding protein C25G10.01 [Vitis
vinifera]
Length = 211
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+++ L++ R+S GFGF++++ EDAD I+ L+ + GR+I VEK+K
Sbjct: 79 KVVECHLVTDPRTRESRGFGFVTMETVEDADRCIKYLNRSVLEGRLITVEKAK 131
>gi|327301915|ref|XP_003235650.1| glycine-rich RNA-binding protein [Trichophyton rubrum CBS 118892]
gi|326463002|gb|EGD88455.1| glycine-rich RNA-binding protein [Trichophyton rubrum CBS 118892]
Length = 149
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ D +ADAA+ ++ E++GR+I V+K+
Sbjct: 44 SRGFGFVRFSSDSEADAALNAMNNQEFDGRVIRVDKA 80
>gi|148239850|ref|YP_001225237.1| RNA-binding protein [Synechococcus sp. WH 7803]
gi|147848389|emb|CAK23940.1| RNA-binding protein, RRM domain [Synechococcus sp. WH 7803]
Length = 116
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
GFGF+ ++ DED AI L EW GR+I V K+
Sbjct: 43 GFGFVEMNSDEDEQKAIDDLQNVEWMGRMIRVNKA 77
>gi|441500694|ref|ZP_20982848.1| RNA-binding protein [Fulvivirga imtechensis AK7]
gi|441435535|gb|ELR68925.1| RNA-binding protein [Fulvivirga imtechensis AK7]
Length = 84
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + D+ A AI+ L+ETE++GR I V++++
Sbjct: 41 SKGFGFVEMPDDDAAREAIKALNETEFDGRTIVVKEARP 79
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S +R EDA A+ ++ E NG++++V +++
Sbjct: 227 NGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQ 267
>gi|326474784|gb|EGD98793.1| glycine-rich RNA-binding protein [Trichophyton tonsurans CBS
112818]
Length = 149
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ D +ADAA+ ++ E++GR+I V+K+
Sbjct: 44 SRGFGFVRFSSDSEADAALNAMNNQEFDGRVIRVDKA 80
>gi|326518018|dbj|BAK07261.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 159
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 28 RDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65
R S GF F+++D EDA+ I+ L+++E GR I VEK
Sbjct: 107 RVSRGFAFITMDTVEDAERCIKYLNQSELLGRNITVEK 144
>gi|213404934|ref|XP_002173239.1| RNA-binding protein [Schizosaccharomyces japonicus yFS275]
gi|212001286|gb|EEB06946.1| RNA-binding protein [Schizosaccharomyces japonicus yFS275]
Length = 292
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 8 DRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
D +K + R S++ + ++S GFGF+SL+ E+ADAA L+ E+ GR++ VE
Sbjct: 107 DMFAKHGTVTRCSIMREPYTKESRGFGFVSLETVEEADAATAALNGQEFYGRVLCVE 163
>gi|345870533|ref|ZP_08822485.1| RNP-1 like RNA-binding protein [Thiorhodococcus drewsii AZ1]
gi|343921736|gb|EGV32449.1| RNP-1 like RNA-binding protein [Thiorhodococcus drewsii AZ1]
Length = 92
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+L ++ + S GFGF+ + + DADAAI+ L+E++ GR + V +++
Sbjct: 26 ELAAAEVIKDKFSGQSKGFGFVDMPSNSDADAAIKALNESDMKGRKLTVNEARP 79
>gi|194337130|ref|YP_002018924.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309607|gb|ACF44307.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 90
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
RD S+ Q+ S+++ + S GFGF+ + + +A AI +++E + NGR I V ++
Sbjct: 18 RDAFSEFGQVESASIINDKFSGRSKGFGFVDMPNESEAREAIESMNEKDLNGRTIKVNEA 77
Query: 67 KS 68
K
Sbjct: 78 KP 79
>gi|115452099|ref|NP_001049650.1| Os03g0265600 [Oryza sativa Japonica Group]
gi|113548121|dbj|BAF11564.1| Os03g0265600 [Oryza sativa Japonica Group]
Length = 125
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65
+++ S++ R+S GFGF+++ ++AD I+ LD + GR+I VEK
Sbjct: 68 EVIDASIVLDPWTRESRGFGFVTMATVKEADLCIKYLDRSVLEGRVITVEK 118
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S +R EDA A+ ++ E NG++++V +++
Sbjct: 227 NGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQ 267
>gi|312130254|ref|YP_003997594.1| rnp-1 like RNA-binding protein [Leadbetterella byssophila DSM
17132]
gi|311906800|gb|ADQ17241.1| RNP-1 like RNA-binding protein [Leadbetterella byssophila DSM
17132]
Length = 90
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + D +A AAI L+ETE +GR I V+ ++
Sbjct: 41 SKGFGFVEMPNDAEAQAAINGLNETELDGRTIVVKVAEP 79
>gi|119490270|ref|ZP_01622783.1| RNA binding protein [Lyngbya sp. PCC 8106]
gi|119454156|gb|EAW35309.1| RNA binding protein [Lyngbya sp. PCC 8106]
Length = 105
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ +D D + +AAI LD EW GR + V K+K
Sbjct: 41 PRGFAFVEMDSDSEEEAAIEALDGAEWMGRDLKVNKAKP 79
>gi|402697295|gb|AFQ90835.1| polyA-binding protein cytoplasmic 1, partial [Sternotherus minor]
Length = 175
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 127 SKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQ 164
>gi|281205541|gb|EFA79731.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 271
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
++L ++ + S GFGF++ ++AD AIR +D ++ +G +I V KSK
Sbjct: 80 KILECVVMVDPNTKISRGFGFITFGSADEADEAIRIMDGSKIDGNVIKVSKSK 132
>gi|443654715|ref|ZP_21131411.1| RNA recognition motiffamily protein [Microcystis aeruginosa
DIANCHI905]
gi|159026915|emb|CAO89166.1| rbpF/A2 [Microcystis aeruginosa PCC 7806]
gi|443333703|gb|ELS48246.1| RNA recognition motiffamily protein [Microcystis aeruginosa
DIANCHI905]
Length = 100
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + DE+ AI TLD EW GR + V K++
Sbjct: 43 GFGFVEMSSDEEEAKAIETLDGAEWMGRQMKVNKARP 79
>gi|440752711|ref|ZP_20931914.1| RNA recognition motif family protein [Microcystis aeruginosa
TAIHU98]
gi|440177204|gb|ELP56477.1| RNA recognition motif family protein [Microcystis aeruginosa
TAIHU98]
Length = 84
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + DE+ AI TLD EW GR + V K++
Sbjct: 26 RGFGFVEMSSDEEEAKAIETLDGAEWMGRQMKVNKARP 63
>gi|67483728|ref|XP_657084.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56474323|gb|EAL51698.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|449705266|gb|EMD45349.1| RNA recognition motif domain containing protein [Entamoeba
histolytica KU27]
Length = 136
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF++ ++DEDA AI ++E E GR I V+ S+
Sbjct: 42 SKGFGFVTFEKDEDAKKAIEEMNEQELEGRRIKVDVSRP 80
>gi|425434353|ref|ZP_18814822.1| putative RNA-binding protein rbpA [Microcystis aeruginosa PCC
9432]
gi|425450092|ref|ZP_18829924.1| putative RNA-binding protein rbpA [Microcystis aeruginosa PCC
7941]
gi|389676152|emb|CCH94759.1| putative RNA-binding protein rbpA [Microcystis aeruginosa PCC
9432]
gi|389769241|emb|CCI05872.1| putative RNA-binding protein rbpA [Microcystis aeruginosa PCC
7941]
Length = 100
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + DE+ AI TLD EW GR + V K++
Sbjct: 43 GFGFVEMSSDEEEAKAIETLDGAEWMGRQMKVNKARP 79
>gi|388858649|emb|CCF48487.1| related to Transformer-2 protein homolog [Ustilago hordei]
Length = 346
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
R ++ +R+ GF F++ + EDA+AAI ++ TE+ GR I V+K++
Sbjct: 104 RAQVMYDPHSREPRGFAFVTFVKAEDAEAAITAMNGTEFLGRKITVDKAR 153
>gi|218245910|ref|YP_002371281.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 8801]
gi|257058958|ref|YP_003136846.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 8802]
gi|218166388|gb|ACK65125.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 8801]
gi|256589124|gb|ACV00011.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 8802]
Length = 98
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D+ DAAI LD EW GR + V K++
Sbjct: 43 GFGFVEMASDDQEDAAIAQLDGAEWMGRQLKVNKARP 79
>gi|425463678|ref|ZP_18843008.1| RNA-binding region protein [Microcystis aeruginosa PCC 9809]
gi|389830338|emb|CCI27810.1| RNA-binding region protein [Microcystis aeruginosa PCC 9809]
Length = 84
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + DE+ AI TLD EW GR + V K++
Sbjct: 26 RGFGFVEMSSDEEEAKAIETLDGAEWMGRQMKVNKARP 63
>gi|425461431|ref|ZP_18840909.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC
9808]
gi|389825716|emb|CCI24327.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC
9808]
Length = 100
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + DE+ AI TLD EW GR + V K++
Sbjct: 43 GFGFVEMSSDEEEAIAIETLDGAEWMGRQMKVNKARP 79
>gi|297849028|ref|XP_002892395.1| hypothetical protein ARALYDRAFT_470756 [Arabidopsis lyrata subsp.
lyrata]
gi|297338237|gb|EFH68654.1| hypothetical protein ARALYDRAFT_470756 [Arabidopsis lyrata subsp.
lyrata]
Length = 381
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 8 DRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
D +K ++ + L+ R+S GFGF+S++ DA+ IR LD + GR+I VEK+
Sbjct: 92 DHFAKEGKVTDVHLVLDPWTRESRGFGFISMESVGDANRCIRYLDHSVLQGRVITVEKA 150
>gi|297793541|ref|XP_002864655.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297310490|gb|EFH40914.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 95
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
Q++ L+ + GFGF++ + ++DA A++ L+ NGR+I VE +K
Sbjct: 32 QIIEARLIRDQQTQRPKGFGFITFESEDDAQNALKALNGKIVNGRLIFVEAAK 84
>gi|255558828|ref|XP_002520437.1| FUS-interacting serine-arginine-rich protein 1, putative [Ricinus
communis]
gi|223540279|gb|EEF41850.1| FUS-interacting serine-arginine-rich protein 1, putative [Ricinus
communis]
Length = 399
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+++ + L+ R+S GFGF+++ +AD I+ L+ + GR+I VEK+K
Sbjct: 72 KVIDVHLVVDPWTRESRGFGFVTMSTLVEADRCIKYLNRSVLEGRVITVEKAK 124
>gi|452836287|gb|EME38231.1| hypothetical protein DOTSEDRAFT_140462 [Dothistroma septosporum
NZE10]
Length = 170
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ D ADAAI+ ++ E++GR I V+K+
Sbjct: 39 SRGFGFVRFAEDSAADAAIQAMNNVEFDGRTIRVDKA 75
>gi|357440407|ref|XP_003590481.1| 30 kDa ribonucleoprotein [Medicago truncatula]
gi|355479529|gb|AES60732.1| 30 kDa ribonucleoprotein [Medicago truncatula]
gi|388503166|gb|AFK39649.1| unknown [Medicago truncatula]
Length = 280
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
Q+L ++ + S GFGF++ ++ D+AIRTLD + NGR I V + S
Sbjct: 221 QVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGRAIRVSPADS 274
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 6 SRDRESKTYQL----LRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRII 61
S +R +T+ + L + +++ ++ R S GFGF++ ++ +DA A+ ++ E NGR++
Sbjct: 203 SNERLQETFSIFGKTLSVKVMTDNIGR-SKGFGFVNFEKHQDAQKAVEDMNGKEINGRML 261
Query: 62 HVEKSK 67
+V +++
Sbjct: 262 YVGRAQ 267
>gi|294460169|gb|ADE75667.1| unknown [Picea sitchensis]
Length = 216
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+R+S GFGF+++D E+AD ++ L+ + GRII VEK+K
Sbjct: 100 SRESRGFGFVTMDTLENADRCVKYLNRSTLEGRIITVEKAK 140
>gi|453089444|gb|EMF17484.1| peptidyl prolyl cis-trans isomerase cyclophilin [Mycosphaerella
populorum SO2202]
Length = 156
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 27 NRDSH-GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
N+D H GFG++ EDA AI +D++E GR+I V ++K
Sbjct: 48 NKDPHRGFGYVEFSLAEDAREAIDNMDQSELYGRVIKVNQAKP 90
>gi|402697293|gb|AFQ90834.1| polyA-binding protein cytoplasmic 1, partial [Oscaecilia
ochrocephala]
Length = 177
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 127 SKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRAQ 164
>gi|354556704|ref|ZP_08975994.1| RNP-1 like RNA-binding protein [Cyanothece sp. ATCC 51472]
gi|353551316|gb|EHC20722.1| RNP-1 like RNA-binding protein [Cyanothece sp. ATCC 51472]
Length = 94
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
R+ + S S GFGF+ + + + AAI LD EW GR + V K++
Sbjct: 29 RVQIPSDRETGKSRGFGFVEMGTETEETAAIEALDGAEWMGRALKVNKARP 79
>gi|422303993|ref|ZP_16391342.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC
9806]
gi|425468337|ref|ZP_18847364.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC
9701]
gi|389790955|emb|CCI13203.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC
9806]
gi|389885016|emb|CCI34745.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC
9701]
Length = 100
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + DE+ AI TLD EW GR + V K++
Sbjct: 43 GFGFVEMSSDEEEAKAIETLDGAEWMGRQMKVNKARP 79
>gi|300869358|ref|ZP_07113948.1| RNA-binding region RNP-1 [Oscillatoria sp. PCC 6506]
gi|300332657|emb|CBN59146.1| RNA-binding region RNP-1 [Oscillatoria sp. PCC 6506]
Length = 106
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D + +AAI LD EW GR + V K+K
Sbjct: 43 GFGFVEMATDAEEEAAITALDGAEWMGRELKVNKAKP 79
>gi|217073784|gb|ACJ85252.1| unknown [Medicago truncatula]
Length = 280
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
Q+L ++ + S GFGF++ ++ D+AIRTLD + NGR I V + S
Sbjct: 221 QVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGRAIRVSPADS 274
>gi|427418082|ref|ZP_18908265.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
gi|425760795|gb|EKV01648.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
Length = 98
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ ++ D + AAI LD EW GR++ V K+K
Sbjct: 41 PRGFAFVEMETDAEETAAIEALDGAEWMGRVLKVNKAKP 79
>gi|411119813|ref|ZP_11392189.1| RRM domain-containing RNA-binding protein [Oscillatoriales
cyanobacterium JSC-12]
gi|410709969|gb|EKQ67480.1| RRM domain-containing RNA-binding protein [Oscillatoriales
cyanobacterium JSC-12]
Length = 90
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S+ ++ R+SL + GF F+ ++ D + DAAI LD EW GR + V K+K
Sbjct: 22 SEYGKVSRVSLPTDRETGRKRGFAFVDMESDAEEDAAIAELDGAEWLGRELKVNKAKP 79
>gi|255944269|ref|XP_002562902.1| Pc20g03510 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587637|emb|CAP85680.1| Pc20g03510 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 151
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ D +ADAA+ ++ E++GR+I V+K+
Sbjct: 39 SRGFGFVRFATDAEADAALGAMNNQEFDGRVIRVDKA 75
>gi|402697297|gb|AFQ90836.1| polyA-binding protein cytoplasmic 1, partial [Testudo hermanni]
Length = 176
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 127 SKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQ 164
>gi|119511522|ref|ZP_01630631.1| RNA-binding region protein [Nodularia spumigena CCY9414]
gi|119463833|gb|EAW44761.1| RNA-binding region protein [Nodularia spumigena CCY9414]
Length = 102
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
R+ L + GFGF+ + D++ AAI LD EW GR + V K+K
Sbjct: 29 RVQLPTNRETGQLRGFGFVEMGTDDEETAAIEALDGAEWMGRDLKVNKAKP 79
>gi|126658060|ref|ZP_01729212.1| RNA-binding region RNP-1 [Cyanothece sp. CCY0110]
gi|126620698|gb|EAZ91415.1| RNA-binding region RNP-1 [Cyanothece sp. CCY0110]
Length = 94
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
R+ + S S GFGF+ + + + AAI LD EW GR + V K++
Sbjct: 29 RVQIPSDRETGKSRGFGFVEMGTETEETAAIEALDGAEWMGRALKVNKARP 79
>gi|166367328|ref|YP_001659601.1| RNA-binding region protein [Microcystis aeruginosa NIES-843]
gi|425440525|ref|ZP_18820825.1| putative RNA-binding protein rbpF [Microcystis aeruginosa PCC
9717]
gi|166089701|dbj|BAG04409.1| RNA-binding region protein [Microcystis aeruginosa NIES-843]
gi|389719028|emb|CCH97091.1| putative RNA-binding protein rbpF [Microcystis aeruginosa PCC
9717]
Length = 100
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + DE+ AI TLD EW GR + V K++
Sbjct: 42 RGFGFVEMSSDEEEAKAIETLDGAEWMGRQMKVNKARP 79
>gi|254423595|ref|ZP_05037313.1| RNA-binding protein, putative [Synechococcus sp. PCC 7335]
gi|196191084|gb|EDX86048.1| RNA-binding protein, putative [Synechococcus sp. PCC 7335]
Length = 84
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
R++L + GF F+ L D + DAAI LD EW GR + V K+K
Sbjct: 29 RVTLPTDRETGRVRGFAFVDLSSDSEEDAAIEALDGAEWMGRDLRVNKAKP 79
>gi|434396627|ref|YP_007130631.1| RNP-1 like RNA-binding protein [Stanieria cyanosphaera PCC 7437]
gi|428267724|gb|AFZ33665.1| RNP-1 like RNA-binding protein [Stanieria cyanosphaera PCC 7437]
Length = 102
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + + + D AI TLD EW GR + V K++
Sbjct: 43 GFGFVEMSNETEEDQAIETLDGAEWMGRELRVNKARP 79
>gi|340383163|ref|XP_003390087.1| PREDICTED: RNA-binding protein 4-like [Amphimedon queenslandica]
Length = 157
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ R+ DA AA++ LD+TE+ G I V+ S S
Sbjct: 39 GFGFVHFRRNSDATAALKALDDTEFMGSHIQVQVSHS 75
>gi|346322022|gb|EGX91621.1| ribosome biogenesis protein Nop4 [Cordyceps militaris CM01]
Length = 818
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
S+ + + +++ ++S GFGF++L +DA A LD+ +W GR I VE
Sbjct: 63 SEYFPVKHATVVVDQQTKESRGFGFVTLADADDAKQAQTVLDKKQWEGRSIRVE 116
>gi|282898657|ref|ZP_06306645.1| RNA-binding region protein RNP-1 [Cylindrospermopsis raciborskii
CS-505]
gi|281196525|gb|EFA71434.1| RNA-binding region protein RNP-1 [Cylindrospermopsis raciborskii
CS-505]
Length = 96
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ ++ D DAAI LD EW GR + V K+K
Sbjct: 43 GFAFVEMNEDAQEDAAISELDGAEWMGRQLRVNKAKP 79
>gi|254424446|ref|ZP_05038164.1| RNA-binding protein, putative [Synechococcus sp. PCC 7335]
gi|196191935|gb|EDX86899.1| RNA-binding protein, putative [Synechococcus sp. PCC 7335]
Length = 84
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
R++L + GF F+ L DE+ AAI LD EW GR + V K+K
Sbjct: 29 RVTLPTDRETGRVRGFAFVDLSSDEEEQAAIEALDGAEWMGRDLRVNKAKP 79
>gi|189500331|ref|YP_001959801.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
gi|189495772|gb|ACE04320.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
Length = 89
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 20 SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+++S S GFGF+ + D +A+ AI L++T+ NGR I V +++
Sbjct: 31 NIISDKFTGRSKGFGFVEMPNDAEANQAIDALNDTDLNGRSIKVNQARP 79
>gi|388502672|gb|AFK39402.1| unknown [Medicago truncatula]
Length = 140
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 33/54 (61%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
Q++ +++ ++ S G+GF++ ++A+ AI ++E NGR++ V+ +K
Sbjct: 57 QVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITEMNEKALNGRVVFVDYAKP 110
>gi|346322586|gb|EGX92185.1| glycine-rich RNA-binding protein [Cordyceps militaris CM01]
Length = 182
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ +D DA +AI ++ E++GR I V+K+
Sbjct: 42 SRGFGFVRYGQDADAQSAIAAMNNVEFDGRTIRVDKA 78
>gi|67923265|ref|ZP_00516750.1| RNA-binding region RNP-1 (RNA recognition motif) [Crocosphaera
watsonii WH 8501]
gi|67854891|gb|EAM50165.1| RNA-binding region RNP-1 (RNA recognition motif) [Crocosphaera
watsonii WH 8501]
Length = 94
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
GF F+ +D D+ AI TLD EW GR + V K+K
Sbjct: 43 GFAFVEMDSDDQEQEAISTLDGAEWMGRTLKVNKAK 78
>gi|416401897|ref|ZP_11687293.1| RNA-binding protein [Crocosphaera watsonii WH 0003]
gi|357261987|gb|EHJ11191.1| RNA-binding protein [Crocosphaera watsonii WH 0003]
Length = 94
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
GF F+ +D D+ AI TLD EW GR + V K+K
Sbjct: 43 GFAFVEMDSDDQEQEAISTLDGAEWMGRTLKVNKAK 78
>gi|427728558|ref|YP_007074795.1| RRM domain-containing RNA-binding protein [Nostoc sp. PCC 7524]
gi|427364477|gb|AFY47198.1| RRM domain-containing RNA-binding protein [Nostoc sp. PCC 7524]
Length = 94
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ ++ D DAAI LD EW GR + V K+K
Sbjct: 42 RGFAFVEMNEDSQEDAAISELDGAEWMGRQLRVNKAKP 79
>gi|358367775|dbj|GAA84393.1| glycine-rich RNA-binding protein [Aspergillus kawachii IFO 4308]
Length = 117
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
S GFGF+ D +ADAA+ ++ E++GR+I V+K+ +
Sbjct: 42 SRGFGFVRFASDAEADAAMNAMNNQEFDGRVIRVDKASES 81
>gi|414075426|ref|YP_006994744.1| RNA-binding protein [Anabaena sp. 90]
gi|413968842|gb|AFW92931.1| RNA-binding protein [Anabaena sp. 90]
Length = 108
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + + + AAI LD EW GR++ V K+K
Sbjct: 43 GFGFVEMGTEAEEQAAIDALDGAEWMGRLLKVNKAKP 79
>gi|296811816|ref|XP_002846246.1| glycine-rich RNA-binding protein [Arthroderma otae CBS 113480]
gi|238843634|gb|EEQ33296.1| glycine-rich RNA-binding protein [Arthroderma otae CBS 113480]
Length = 133
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ + +ADAA+ ++ E++GR+I V+K+
Sbjct: 44 SRGFGFVRFSNESEADAALNAMNNQEFDGRVIRVDKA 80
>gi|428768443|ref|YP_007160233.1| RNP-1 like RNA-binding protein [Cyanobacterium aponinum PCC
10605]
gi|428682722|gb|AFZ52189.1| RNP-1 like RNA-binding protein [Cyanobacterium aponinum PCC
10605]
Length = 81
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D++ AI TLD +W GR I V K+K
Sbjct: 43 GFGFVEMSNDDEEIKAIETLDGAQWMGRQIKVNKAKP 79
>gi|113478076|ref|YP_724137.1| RNA-binding region RNP-1 [Trichodesmium erythraeum IMS101]
gi|110169124|gb|ABG53664.1| RNA-binding region RNP-1 [Trichodesmium erythraeum IMS101]
Length = 97
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
R+ L + GFGF+ + +E+ AI LD EW GR I V K+K
Sbjct: 29 RVQLPTDRETGRPRGFGFVEMSSEEEEQKAIDALDSAEWMGRDIKVNKAKP 79
>gi|2078531|gb|AAC53171.1| Mlark [Mus musculus]
Length = 367
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|2078529|gb|AAC51293.1| Hlark [Homo sapiens]
Length = 366
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|254410328|ref|ZP_05024107.1| RNA-binding protein, putative [Coleofasciculus chthonoplastes PCC
7420]
gi|196182534|gb|EDX77519.1| RNA-binding protein, putative [Coleofasciculus chthonoplastes PCC
7420]
Length = 95
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
R+ L + GFGF+ ++ D++ AAI LD EW GR + V K++
Sbjct: 29 RVQLPTDRETGRPRGFGFVEMETDDEETAAIEALDGAEWMGRNMKVNKARP 79
>gi|296084065|emb|CBI24453.3| unnamed protein product [Vitis vinifera]
Length = 260
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 4 KASRDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
+A D S+ ++ L+ + R S GF F++++ EDA+ I+ L+++ GR I V
Sbjct: 105 RALEDHFSREGKVASCFLVMEPRTRISRGFAFVTMETVEDANRCIKHLNQSVLEGRYITV 164
Query: 64 EKSK 67
EKS+
Sbjct: 165 EKSR 168
>gi|220906769|ref|YP_002482080.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7425]
gi|219863380|gb|ACL43719.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7425]
Length = 104
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D + DAAI LD EW GR + V K++
Sbjct: 43 GFGFVEMSTDAEEDAAIADLDGAEWMGRQLRVNKARP 79
>gi|115384864|ref|XP_001208979.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114196671|gb|EAU38371.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 157
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
S GFGF++ ++ADAA+ L+ E++GRII V+
Sbjct: 69 SRGFGFVTFTSPQEADAALNELNNQEFDGRIIRVD 103
>gi|284929607|ref|YP_003422129.1| RRM domain-containing RNA-binding protein [cyanobacterium UCYN-A]
gi|284810051|gb|ADB95748.1| RRM domain-containing RNA-binding protein [cyanobacterium UCYN-A]
Length = 81
Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ ++ + AAI L+ +EW GRI+ V K+K
Sbjct: 43 GFGFVEMETENQESAAIDKLNGSEWMGRILKVNKAKP 79
>gi|302782067|ref|XP_002972807.1| hypothetical protein SELMODRAFT_59634 [Selaginella
moellendorffii]
gi|300159408|gb|EFJ26028.1| hypothetical protein SELMODRAFT_59634 [Selaginella
moellendorffii]
Length = 82
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65
S+ ++L ++ ++S GFGF+++ EDA+ I ++ + GRII +EK
Sbjct: 28 SREGKVLECRIVVDPRTKESRGFGFVTMASTEDAERCINYMNRSTLEGRIITIEK 82
>gi|443477394|ref|ZP_21067245.1| RNP-1 like RNA-binding protein [Pseudanabaena biceps PCC 7429]
gi|443017490|gb|ELS31918.1| RNP-1 like RNA-binding protein [Pseudanabaena biceps PCC 7429]
Length = 95
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ ++ D +AAI L+E EW GR + V K+K
Sbjct: 42 RGFAFVDMEDDAQEEAAIAALNEAEWMGRTLRVNKAKP 79
>gi|172038014|ref|YP_001804515.1| RNA-binding protein [Cyanothece sp. ATCC 51142]
gi|171699468|gb|ACB52449.1| RNA-binding protein [Cyanothece sp. ATCC 51142]
Length = 108
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
R+ + S S GFGF+ + + + AAI LD EW GR + V K++
Sbjct: 43 RVQIPSDRETGKSRGFGFVEMGTETEETAAIEALDGAEWMGRALKVNKARP 93
>gi|389632187|ref|XP_003713746.1| hypothetical protein MGG_04816 [Magnaporthe oryzae 70-15]
gi|351646079|gb|EHA53939.1| hypothetical protein MGG_04816 [Magnaporthe oryzae 70-15]
Length = 236
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
S GFGF+ ++DA AI ++ E++GR I V+K+ T
Sbjct: 97 SRGFGFVRYTNEDDAQKAITAMNNVEFDGRTIRVDKASDT 136
>gi|296226907|ref|XP_002759113.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Callithrix jacchus]
Length = 604
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 198 SKGFGFVSFERHEDAQKAVDVMNGKELNGKQIYVGRAQ 235
>gi|189465920|ref|ZP_03014705.1| hypothetical protein BACINT_02283 [Bacteroides intestinalis DSM
17393]
gi|189434184|gb|EDV03169.1| hypothetical protein BACINT_02283 [Bacteroides intestinalis DSM
17393]
Length = 128
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S GFGF+ + DE+ AI TL+ETE+ G+ I V
Sbjct: 41 SRGFGFVEMPNDEEGQKAIDTLNETEFEGKNIAV 74
>gi|88808896|ref|ZP_01124405.1| RNA-binding protein RbpD [Synechococcus sp. WH 7805]
gi|88786838|gb|EAR17996.1| RNA-binding protein RbpD [Synechococcus sp. WH 7805]
Length = 115
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
GFGF+ ++ D+D AI L EW GR+I V K+
Sbjct: 43 GFGFVEMNSDQDEQKAIDDLQNVEWMGRMIRVNKA 77
>gi|407929404|gb|EKG22234.1| hypothetical protein MPH_00413 [Macrophomina phaseolina MS6]
Length = 159
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ ++ DA+AAI+ ++ E++GR I V+K+
Sbjct: 42 SRGFGFVRFTQESDAEAAIQAMNNVEFDGRTIRVDKA 78
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E NG+II V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQ 267
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E NG+II V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQ 267
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E NG+II V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQ 267
>gi|15231311|ref|NP_190188.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|7630030|emb|CAB88326.1| RNA binding protein-like [Arabidopsis thaliana]
gi|46931202|gb|AAT06405.1| At3g46020 [Arabidopsis thaliana]
gi|50253530|gb|AAT71967.1| At3g46020 [Arabidopsis thaliana]
gi|332644581|gb|AEE78102.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 102
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
Q+ L+ S + GFGF++ D ++DA A+++LD +GR+I VE +K+
Sbjct: 32 QIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVAKNA 86
>gi|427419443|ref|ZP_18909626.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
gi|425762156|gb|EKV03009.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
Length = 86
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ + D + DAAI LD EW GR I V K++
Sbjct: 41 PRGFAFVEMSADAEEDAAIEALDGAEWLGREIRVNKARP 79
>gi|159164093|pdb|2DGT|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Rna- Binding Protein 30
Length = 92
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 46 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ + NG+ I+V ++K
Sbjct: 230 SKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRAK 267
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E NG+II V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQ 267
>gi|352093687|ref|ZP_08954858.1| RNP-1 like RNA-binding protein [Synechococcus sp. WH 8016]
gi|351680027|gb|EHA63159.1| RNP-1 like RNA-binding protein [Synechococcus sp. WH 8016]
Length = 118
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 23 SKSLNRDS---HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S L+R++ GFGF+ + DED AI L EW GR+I V K+
Sbjct: 31 SLPLDRETGRKRGFGFVEMATDEDEQKAIDDLQNVEWMGRMIRVNKA 77
>gi|442771473|gb|AGC72159.1| RNA-binding protein [uncultured bacterium A1Q1_fos_560]
Length = 98
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 21 LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+++ S GFGF+ + D +A AAI L+ T++ GR + V +++
Sbjct: 34 IITDKFTGQSRGFGFVEMSGDSEAQAAINALNGTQFGGRTLTVNEARP 81
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S +R EDA A+ ++ + NG+ I+V +++
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRAQ 267
>gi|374385669|ref|ZP_09643172.1| hypothetical protein HMPREF9449_01558 [Odoribacter laneus YIT
12061]
gi|373225371|gb|EHP47705.1| hypothetical protein HMPREF9449_01558 [Odoribacter laneus YIT
12061]
Length = 100
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S GFGF+ + D++ AI L+E E++GRII V
Sbjct: 41 SRGFGFVEMKNDDEGQKAISELNEAEYDGRIISV 74
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NGR ++V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGRQVYVGRAQ 267
>gi|334339635|ref|YP_004544615.1| RNP-1 like RNA-binding protein [Desulfotomaculum ruminis DSM
2154]
gi|334090989|gb|AEG59329.1| RNP-1 like RNA-binding protein [Desulfotomaculum ruminis DSM
2154]
Length = 85
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ ++ DEDA+ + L+ T+ NGR+I V ++KS
Sbjct: 42 SRGFGFVEVN-DEDAEKMVAALNGTDLNGRVITVNEAKS 79
>gi|389741761|gb|EIM82949.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 145
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S GFGF++ E+ADAAI L+E E +GR I V
Sbjct: 43 SRGFGFVTFGTPEEADAAINNLNEQELDGRRIRV 76
>gi|197098970|ref|NP_001126757.1| RNA-binding protein 4 [Pongo abelii]
gi|55732548|emb|CAH92974.1| hypothetical protein [Pongo abelii]
Length = 170
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|388505636|gb|AFK40884.1| unknown [Lotus japonicus]
Length = 344
Score = 38.9 bits (89), Expect = 0.40, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 34/52 (65%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+++ + L+ R+S GFGF+++D EDA+ ++ L+ + GR+I VEK+
Sbjct: 73 KVIDVHLVVDPWTRESRGFGFVTMDTLEDANRCVKYLNRSVLEGRVITVEKA 124
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 38.9 bits (89), Expect = 0.41, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 5 ASRDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
A D SK ++ + ++ S + S GFGF+ ++ EDA AA+ L+ TE G+ + V
Sbjct: 239 ALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQAAVNALNGTELAGKTLFVA 298
Query: 65 KSK 67
+++
Sbjct: 299 RAQ 301
>gi|113953042|ref|YP_730260.1| RNA-binding protein [Synechococcus sp. CC9311]
gi|113880393|gb|ABI45351.1| putative RNA-binding protein [Synechococcus sp. CC9311]
Length = 126
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 23 SKSLNRDS---HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S L+R++ GFGF+ + DED AI L EW GR+I V K+
Sbjct: 31 SLPLDRETGRKRGFGFVEMATDEDEQKAIDDLQNVEWMGRMIRVNKA 77
>gi|254410375|ref|ZP_05024154.1| RNA-binding protein [Coleofasciculus chthonoplastes PCC 7420]
gi|196182581|gb|EDX77566.1| RNA-binding protein [Coleofasciculus chthonoplastes PCC 7420]
Length = 103
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ +D + + AAI LD EW GR + V K+K
Sbjct: 43 GFGFVEMDSEAEESAAIDALDGAEWMGRDLKVNKAKP 79
>gi|17231514|ref|NP_488062.1| RNA-binding protein [Nostoc sp. PCC 7120]
gi|75907900|ref|YP_322196.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
gi|81818528|sp|Q44556.3|RBPD_NOSS1 RecName: Full=Putative RNA-binding protein RbpD
gi|1064779|dbj|BAA08403.1| RNA-binding protein [Anabaena variabilis]
gi|17133157|dbj|BAB75721.1| RNA-binding protein [Nostoc sp. PCC 7120]
gi|75701625|gb|ABA21301.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
Length = 94
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ ++ D DAAI LD EW GR + V K+K
Sbjct: 42 RGFAFVEMNEDAQEDAAITELDGAEWMGRQLRVNKAKP 79
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
N S GFGF+S ++ EDA+ A+ ++ E +G+II V
Sbjct: 38 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 74
>gi|452846936|gb|EME48868.1| hypothetical protein DOTSEDRAFT_58159 [Dothistroma septosporum
NZE10]
Length = 149
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 15 QLLRLSLLSKSL--NRDSH-GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+++ +SL L N D H GFG++ EDA AI ++++E GR+I V ++K
Sbjct: 34 EIVEVSLPKPELKSNHDPHRGFGYVEFSLAEDAREAIDNMNQSELYGRVIKVNQAKP 90
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 38.9 bits (89), Expect = 0.42, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S ++ EDA+ A+ ++ TE NG+ + V +++
Sbjct: 230 SRGFGFVSFEKHEDANKAVEEINGTELNGKTVFVGRAQ 267
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 38.9 bits (89), Expect = 0.42, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NGR ++V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQ 267
>gi|194336480|ref|YP_002018274.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194308957|gb|ACF43657.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 95
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
RD S+ ++ S+++ + S GFGF+ + +D +A AI +++ + NGR + V ++
Sbjct: 18 RDAFSEFGEVANASIINDKFSGRSKGFGFVEMPKDSEAREAIESMNGKDLNGRTVTVNEA 77
Query: 67 K 67
K
Sbjct: 78 K 78
>gi|430745977|ref|YP_007205106.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430017697|gb|AGA29411.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 130
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ +D D++A AAI L+ T + GR + V +++
Sbjct: 43 SRGFGFVEMDHDDEAQAAIDALNGTAYGGRPLTVNEARP 81
>gi|158338654|ref|YP_001519831.1| RNA-binding protein [Acaryochloris marina MBIC11017]
gi|359461822|ref|ZP_09250385.1| RNA-binding protein [Acaryochloris sp. CCMEE 5410]
gi|158308895|gb|ABW30512.1| RNA-binding protein [Acaryochloris marina MBIC11017]
Length = 86
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ ++ D + +AAI LD EW GR + V K++
Sbjct: 43 GFGFVDMENDSEEEAAIADLDGAEWMGRQLKVNKARP 79
>gi|427740185|ref|YP_007059729.1| RRM domain-containing RNA-binding protein [Rivularia sp. PCC
7116]
gi|427375226|gb|AFY59182.1| RRM domain-containing RNA-binding protein [Rivularia sp. PCC
7116]
Length = 95
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
R+ L + S GFGF+ + +++ +AI+ LD EW GR + V K++
Sbjct: 29 RVQLPTDRETGRSRGFGFVEMQSEDEESSAIQALDGAEWMGRAMKVNKARP 79
>gi|169832010|ref|YP_001717992.1| RNP1-like RNA-binding protein [Candidatus Desulforudis
audaxviator MP104C]
gi|169638854|gb|ACA60360.1| RNP1-like RNA-binding protein [Candidatus Desulforudis
audaxviator MP104C]
Length = 89
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + +DEDA+ I L+ TE+ GRII V ++++
Sbjct: 43 SRGFGFVEV-KDEDAETMINALNGTEFGGRIITVNEARA 80
>gi|402697283|gb|AFQ90829.1| polyA-binding protein cytoplasmic 1, partial [Dibamus sp. JJF-2012]
Length = 177
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S GFGF+S +R EDA A+ ++ E NG+ I+V
Sbjct: 127 SKGFGFVSFERHEDAQKAVDXMNGKELNGKQIYV 160
>gi|164659141|ref|XP_001730695.1| hypothetical protein MGL_2149 [Malassezia globosa CBS 7966]
gi|159104592|gb|EDP43481.1| hypothetical protein MGL_2149 [Malassezia globosa CBS 7966]
Length = 190
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF++ ++ADAAI L+E E +GR I V + S
Sbjct: 42 SRGFGFVTFMTQQEADAAIMALNEQELDGRRIRVNMANS 80
>gi|402697291|gb|AFQ90833.1| polyA-binding protein cytoplasmic 1, partial [Malaclemys terrapin]
Length = 175
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 127 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 164
>gi|340546029|gb|AEK51813.1| cytoplasmic poly(A) binding protein 1 [Alligator mississippiensis]
gi|402697275|gb|AFQ90825.1| polyA-binding protein cytoplasmic 1, partial [Anniella pulchra]
gi|402697277|gb|AFQ90826.1| polyA-binding protein cytoplasmic 1, partial [Chelydra serpentina]
gi|402697281|gb|AFQ90828.1| polyA-binding protein cytoplasmic 1, partial [Cyrtodactylus sp.
JJF-2012]
gi|402697287|gb|AFQ90831.1| polyA-binding protein cytoplasmic 1, partial [Draco beccarii]
gi|402697289|gb|AFQ90832.1| polyA-binding protein cytoplasmic 1, partial [Draco sumatranus]
Length = 177
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 127 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 164
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 38.5 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NGR ++V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQ 267
>gi|427731365|ref|YP_007077602.1| RRM domain-containing RNA-binding protein [Nostoc sp. PCC 7524]
gi|427367284|gb|AFY50005.1| RRM domain-containing RNA-binding protein [Nostoc sp. PCC 7524]
Length = 100
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D + AAI LD EW GR + V K+K
Sbjct: 43 GFGFVEMSSDAEETAAIEALDGAEWMGRDLKVNKAKP 79
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 38.5 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 12 KTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
K Y + L K S GFGF+ + EDA A+ L++TE+ G+ ++V +++
Sbjct: 245 KPYGTITSVALEKDAEGKSRGFGFVDFENHEDAVKAVEALNDTEYKGQTLYVGRAQ 300
>gi|351695842|gb|EHA98760.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 709
Score = 38.5 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 320 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 357
>gi|393218023|gb|EJD03511.1| hypothetical protein FOMMEDRAFT_82331 [Fomitiporia mediterranea
MF3/22]
Length = 151
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 12 KTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNG-RIIHVEK 65
K ++ ++S++ +DS GF F++++ E+A+AAI L+ T+ G +++ VEK
Sbjct: 38 KVGRVQKVSIMCDPHTKDSRGFAFVTMETPEEAEAAINELNATKPFGSKVMSVEK 92
>gi|354566485|ref|ZP_08985657.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
gi|353545501|gb|EHC14952.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
Length = 99
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D + AAI LD EW GR + V K+K
Sbjct: 43 GFGFVEMSTDAEETAAIEALDGAEWMGRDLKVNKAKP 79
>gi|340546031|gb|AEK51814.1| cytoplasmic poly(A) binding protein 1 [Heteronotia binoei]
Length = 177
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 127 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 164
>gi|42561780|ref|NP_563787.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|28973767|gb|AAO64199.1| putative transformer-SR ribonucleoprotein [Arabidopsis thaliana]
gi|332189991|gb|AEE28112.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 382
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 8 DRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
D +K ++ + L+ R+S GFGF+S+ DA+ IR+LD + GR+I VEK+
Sbjct: 93 DHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKA 151
>gi|154279360|ref|XP_001540493.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150412436|gb|EDN07823.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 149
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ D +ADAA+ + E++GR+I V+K+
Sbjct: 42 SRGFGFVRFASDAEADAAMNAMSNQEFDGRVIRVDKA 78
>gi|225562488|gb|EEH10767.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
gi|325092417|gb|EGC45727.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 136
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ D +ADAA+ + E++GR+I V+K+
Sbjct: 42 SRGFGFVRFASDAEADAAMNAMSNQEFDGRVIRVDKA 78
>gi|427416011|ref|ZP_18906194.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
gi|425758724|gb|EKU99576.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
Length = 98
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++ R++L GF F+++ +DE+ D AI LD EW GR + V K+K
Sbjct: 26 EVARITLPVDRETGKRRGFAFINMVKDEEEDLAIAELDGAEWLGRELRVNKAKP 79
>gi|9757907|dbj|BAB08354.1| unnamed protein product [Arabidopsis thaliana]
Length = 112
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
GFGF++ + ++DA A++ L+ NGR+I VE +K
Sbjct: 61 PKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAK 98
>gi|116791319|gb|ABK25933.1| unknown [Picea sitchensis]
Length = 221
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S GFGF+S +E+A AAI +D + +GR++HV
Sbjct: 80 SRGFGFISFTSNEEAAAAITGMDGKDLHGRLVHV 113
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S ++ EDA+ A+ ++ TE NG+ + V +++
Sbjct: 231 SRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQ 268
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 198 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 235
>gi|145233965|ref|XP_001400355.1| glycine-rich RNA-binding protein 2 [Aspergillus niger CBS 513.88]
gi|134057294|emb|CAK37908.1| unnamed protein product [Aspergillus niger]
gi|350635078|gb|EHA23440.1| hypothetical protein ASPNIDRAFT_197860 [Aspergillus niger ATCC
1015]
Length = 116
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ D +ADAA+ ++ E++GR+I V+K+
Sbjct: 42 SRGFGFVRFASDVEADAAMNAMNNQEFDGRVIRVDKA 78
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 121 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 158
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S ++ EDA+ A+ ++ TE NG+ + V +++
Sbjct: 230 SRGFGFISYEKHEDANKAVEDMNGTELNGKTVFVGRAQ 267
>gi|4850347|dbj|BAA77714.1| RNA-binding protein [Anabaena variabilis]
Length = 103
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D + AAI LD EW GR + V K+K
Sbjct: 43 GFGFVEMGSDAEETAAIEALDGAEWMGRDLKVNKAKP 79
>gi|292490317|ref|YP_003525756.1| RNP-1 like RNA-binding protein [Nitrosococcus halophilus Nc4]
gi|291578912|gb|ADE13369.1| RNP-1 like RNA-binding protein [Nitrosococcus halophilus Nc4]
Length = 97
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 21 LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++ K NR S GFGF+ + R EDA+ AI+ +++++ GR I V +++
Sbjct: 33 IVDKFSNR-SKGFGFVEMARQEDAETAIKEMNDSDLKGRQIVVNQARP 79
>gi|33865457|ref|NP_897016.1| rna-binding protein RbpD [Synechococcus sp. WH 8102]
gi|33632626|emb|CAE07438.1| putativeRNA-binding protein RbpD [Synechococcus sp. WH 8102]
Length = 96
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 22 LSKSLNRDS---HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S L+R++ GF F+ + DED AI L E EW GR+I V K+
Sbjct: 30 CSLPLDRETGRKRGFAFVEMVNDEDEQKAIDDLQEVEWMGRMIRVSKA 77
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|304055|gb|AAA17426.1| RNA-binding protein [Anabaena sp.]
Length = 103
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D + AAI LD EW GR + V K+K
Sbjct: 43 GFGFVEMGSDAEETAAIEALDGAEWMGRDLKVNKAKP 79
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 38.5 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 250 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 287
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 38.5 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 8 DRESKTYQLLRLSLLSKSLNRD---SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
DR SK ++ +L K + D S GFGF++ + EDA AI ++ E NGR I+
Sbjct: 304 DRLSKIFEKFGPTLSVKVMRDDCGRSKGFGFVNFQKHEDAQNAIDNMNGKELNGRQIYAG 363
Query: 65 KSK 67
+++
Sbjct: 364 RAQ 366
>gi|297819134|ref|XP_002877450.1| hypothetical protein ARALYDRAFT_905782 [Arabidopsis lyrata subsp.
lyrata]
gi|297323288|gb|EFH53709.1| hypothetical protein ARALYDRAFT_905782 [Arabidopsis lyrata subsp.
lyrata]
Length = 102
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
Q+ L+ S + GFGF++ + ++DA A+++LD GR+I VE +KS+
Sbjct: 32 QIKEARLIRDSETQRPKGFGFITFESEDDARKALKSLDGKIVEGRLIFVEVAKSS 86
>gi|17229579|ref|NP_486127.1| RNA-binding protein RbpA2 [Nostoc sp. PCC 7120]
gi|75909339|ref|YP_323635.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
gi|17131178|dbj|BAB73786.1| RNA-binding protein RbpA2 [Nostoc sp. PCC 7120]
gi|75703064|gb|ABA22740.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
Length = 103
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D + AAI LD EW GR + V K+K
Sbjct: 43 GFGFVEMGSDAEETAAIEALDGAEWMGRDLKVNKAKP 79
>gi|17230420|ref|NP_486968.1| RNA-binding protein [Nostoc sp. PCC 7120]
gi|75907197|ref|YP_321493.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
gi|81818505|sp|Q44554.3|RBPB_NOSS1 RecName: Full=Putative RNA-binding protein RbpB
gi|304057|gb|AAA67898.1| RNA-binding protein [Nostoc sp. PCC 7120]
gi|801736|dbj|BAA09050.1| RNA-binding protein RbpB [Anabaena variabilis]
gi|17132022|dbj|BAB74627.1| RNA-binding protein [Nostoc sp. PCC 7120]
gi|75700922|gb|ABA20598.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
Length = 103
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D + AAI LD EW GR + V K+K
Sbjct: 43 GFGFVEMGSDAEETAAIEALDGAEWMGRDLKVNKAKP 79
>gi|259486065|tpe|CBF83611.1| TPA: glycine-rich RNA-binding protein, putative (AFU_orthologue;
AFUA_3G08580) [Aspergillus nidulans FGSC A4]
Length = 128
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ + +ADAA+ ++ E++GRII V+K+
Sbjct: 42 SRGFGFVRFASEPEADAAMGAMNNQEFDGRIIRVDKA 78
>gi|428309319|ref|YP_007120296.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
gi|428250931|gb|AFZ16890.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
Length = 101
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ + DE+ AAI LD EW GR + V K+K
Sbjct: 43 GFAFVEMGTDEEETAAIEALDGAEWMGRNLKVNKAKP 79
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 38.5 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 38.5 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 38.5 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|428305437|ref|YP_007142262.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
gi|428246972|gb|AFZ12752.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
Length = 102
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D++ AAI LD EW GR + V K+K
Sbjct: 43 GFGFVEMSTDDEETAAIDALDGAEWMGRDLKVNKAKP 79
>gi|862465|dbj|BAA04177.1| ss-DNA binding protein 12RNP2 precursor [Synechococcus elongatus
PCC 6301]
Length = 100
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 19 LSLLSKSLNRDS---HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+S +S ++R++ GF F+ ++ D DAAI LD EW GR + V K++
Sbjct: 27 VSRVSLPVDRETGRLRGFAFIEMEEDAHEDAAISELDGAEWFGRQLRVSKARP 79
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 234 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 271
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|443326242|ref|ZP_21054903.1| RRM domain-containing RNA-binding protein [Xenococcus sp. PCC
7305]
gi|442794168|gb|ELS03594.1| RRM domain-containing RNA-binding protein [Xenococcus sp. PCC
7305]
Length = 101
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + + + D AI TLD EW GR + V K++
Sbjct: 43 GFGFVEMANEAEEDKAIETLDGAEWMGRELRVNKARP 79
>gi|285808363|gb|ADC35892.1| RNP-1 like RNA-binding protein [uncultured bacterium 246]
Length = 104
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 12 KTY-QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+TY ++ R+ +++ + GF F+ + DEDA AI L+ T+ +GR ++V ++K
Sbjct: 23 ETYGEIARIQIMTDRDTGQARGFAFVEMTNDEDAAKAIAGLNGTQLDGRALNVNEAKP 80
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|172038249|ref|YP_001804750.1| RNA-binding protein [Cyanothece sp. ATCC 51142]
gi|354554398|ref|ZP_08973703.1| RNP-1 like RNA-binding protein [Cyanothece sp. ATCC 51472]
gi|171699703|gb|ACB52684.1| RNA-binding protein [Cyanothece sp. ATCC 51142]
gi|353554077|gb|EHC23468.1| RNP-1 like RNA-binding protein [Cyanothece sp. ATCC 51472]
Length = 97
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
GF F+ ++ D+ + AI TLD EW GR + V K+K
Sbjct: 43 GFAFVEMNSDDQEEQAISTLDGAEWMGRTLKVNKAK 78
>gi|157417688|gb|ABV54791.1| RNA-binding 1-like protein [Ilyanassa obsoleta]
Length = 149
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 20 SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
SL + + R GF F+ D DA+ A+R LD T NGR + VE S
Sbjct: 36 SLKNVWVARQPAGFAFVEFDDPRDAEDAVRALDGTRINGRRVRVEMS 82
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 104 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 141
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 227 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 264
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 227 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 264
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|242823058|ref|XP_002488014.1| glycine-rich RNA-binding protein, putative [Talaromyces
stipitatus ATCC 10500]
gi|218712935|gb|EED12360.1| glycine-rich RNA-binding protein, putative [Talaromyces
stipitatus ATCC 10500]
Length = 134
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ D +ADAAI ++ E++GR+I V+++ +
Sbjct: 42 SRGFGFVRFATDAEADAAIDGMNNQEFDGRVIRVDRASN 80
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 227 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 264
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|1666299|emb|CAA63557.1| RNA-binding protein [Anabaena variabilis]
Length = 102
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ + D + DAAI LD EW GR + V K+K
Sbjct: 41 PRGFAFVEMGTDAEEDAAIEGLDGAEWMGRDLKVNKAKP 79
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 38.5 bits (88), Expect = 0.54, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S ++ EDA+ A+ ++ TE NG+ + V +++
Sbjct: 230 SRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQ 267
>gi|224059524|ref|XP_002299889.1| predicted protein [Populus trichocarpa]
gi|222847147|gb|EEE84694.1| predicted protein [Populus trichocarpa]
Length = 88
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
RL + SK+L GFGF++ + + DA A++ ++ NGR+I VE +K T
Sbjct: 37 RLVVESKTLR--PKGFGFVTFESEADAHKALKAMNGRIVNGRLIFVEVAKDT 86
>gi|340546033|gb|AEK51815.1| cytoplasmic poly(A) binding protein 1 [Ichthyophis bannanicus]
Length = 177
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
SK + L + +++ S + S GFGF+S ++ EDA+ A+ ++ + NG+++ V +++
Sbjct: 109 SKYGKTLSVKVMTDSTGK-SKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQ 164
>gi|119488026|ref|ZP_01621470.1| RNA-binding region protein [Lyngbya sp. PCC 8106]
gi|119455315|gb|EAW36454.1| RNA-binding region protein [Lyngbya sp. PCC 8106]
Length = 100
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 16 LLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ R+S+ + GF F+ + + + DAAI LD EW GR + V K+K
Sbjct: 27 VQRVSIPTDRETGRPRGFAFVEMGAESEEDAAIEALDGAEWMGRDLKVNKAKP 79
>gi|328724108|ref|XP_001942761.2| PREDICTED: hypothetical protein LOC100162845 [Acyrthosiphon pisum]
Length = 1020
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+GF++L EDA+ +I L +TE +GR+I VE++K
Sbjct: 489 YGFVTLSSAEDANRSIENLHKTELHGRVISVERAK 523
>gi|302926643|ref|XP_003054335.1| hypothetical protein NECHADRAFT_74951 [Nectria haematococca mpVI
77-13-4]
gi|256735276|gb|EEU48622.1| hypothetical protein NECHADRAFT_74951 [Nectria haematococca mpVI
77-13-4]
Length = 178
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ ++ DA AI T++ E++GR I V+K+
Sbjct: 45 SRGFGFVRYTQEGDAQKAIATMNNVEFDGRTIRVDKA 81
>gi|221132804|ref|XP_002167622.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Hydra
magnipapillata]
Length = 161
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 16 LLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++++S++ + GF F+ D +EDA+AAI + + NGR I V ++K+
Sbjct: 31 VVKVSIIKDRETQRPRGFAFVEFDSEEDAEAAIDGCNGQDVNGRQITVARAKA 83
>gi|115470030|ref|NP_001058614.1| Os06g0724600 [Oryza sativa Japonica Group]
gi|113596654|dbj|BAF20528.1| Os06g0724600 [Oryza sativa Japonica Group]
gi|215707213|dbj|BAG93673.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 164
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 28 RDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
R S GF F+++D EDA+ I+ L+++ GR I VEK +
Sbjct: 103 RVSRGFAFVTMDTVEDAERCIKYLNQSVMEGRNITVEKKR 142
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S ++ EDA+ A+ ++ TE NG+ + V +++
Sbjct: 230 SRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQ 267
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 38.5 bits (88), Expect = 0.56, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|322695427|gb|EFY87235.1| RNA recognition motif containing protein [Metarhizium acridum CQMa
102]
Length = 725
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 28 RDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
++S G+GF++L +DA AA TLD+ EW G+ I ++
Sbjct: 80 KESRGYGFVTLADSDDALAAKNTLDKAEWEGKRIRID 116
>gi|67525063|ref|XP_660593.1| hypothetical protein AN2989.2 [Aspergillus nidulans FGSC A4]
gi|40744384|gb|EAA63560.1| hypothetical protein AN2989.2 [Aspergillus nidulans FGSC A4]
Length = 118
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ + +ADAA+ ++ E++GRII V+K+
Sbjct: 42 SRGFGFVRFASEPEADAAMGAMNNQEFDGRIIRVDKA 78
>gi|400602889|gb|EJP70487.1| RNA recognition domain-containing protein [Beauveria bassiana
ARSEF 2860]
Length = 181
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ +++ DA +AI ++ E++GR I V+K+
Sbjct: 42 SRGFGFVRYNQEADAQSAIAAMNNVEFDGRTIRVDKA 78
>gi|428208904|ref|YP_007093257.1| RNP-1 like RNA-binding protein [Chroococcidiopsis thermalis PCC
7203]
gi|428010825|gb|AFY89388.1| RNP-1 like RNA-binding protein [Chroococcidiopsis thermalis PCC
7203]
Length = 103
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ ++ ++ +AAI LD W GR++ V K+K
Sbjct: 41 PRGFGFVEMETEDAEEAAISELDGARWMGRVLKVNKAKP 79
>gi|427719763|ref|YP_007067757.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
gi|427352199|gb|AFY34923.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
Length = 94
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ ++ D DAAI LD EW GR + V K+K
Sbjct: 42 RGFAFVDMNEDAQEDAAIVELDGAEWMGRQLRVNKAKP 79
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 38.5 bits (88), Expect = 0.57, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S ++ EDA+ A+ ++ TE NG+ + V +++
Sbjct: 230 SRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQ 267
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 38.5 bits (88), Expect = 0.57, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 159 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 196
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 38.5 bits (88), Expect = 0.57, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 38.5 bits (88), Expect = 0.58, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 245 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 282
>gi|315057077|ref|XP_003177913.1| hypothetical protein MGYG_01973 [Arthroderma gypseum CBS 118893]
gi|311339759|gb|EFQ98961.1| hypothetical protein MGYG_01973 [Arthroderma gypseum CBS 118893]
Length = 152
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ + +ADAA+ ++ E++GR+I V+K+
Sbjct: 44 SRGFGFVRFSSEAEADAALNAMNNQEFDGRVIRVDKA 80
>gi|66576254|gb|AAY51685.1| RNA-binding protein [Chlorobium tepidum TLS]
Length = 90
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + D +A+ AI L+E+ NGR I V ++K
Sbjct: 41 SKGFGFVEMPDDAEANEAISQLNESSLNGRKIRVNEAKP 79
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 38.1 bits (87), Expect = 0.59, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 159 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 196
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 38.1 bits (87), Expect = 0.59, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 38.1 bits (87), Expect = 0.59, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 159 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 196
>gi|78185978|ref|YP_374021.1| RNA recognition motif-containing protein [Chlorobium luteolum DSM
273]
gi|78165880|gb|ABB22978.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
luteolum DSM 273]
Length = 99
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
RD S+ Q+ +++ + S GFGF+ + DE AAI ++E E+ GR I V
Sbjct: 27 RDAFSQFGQVDSANIIMDKFSGRSKGFGFVDMSSDEAGRAAIEAMNEQEFKGRTIKV 83
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 38.1 bits (87), Expect = 0.59, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 397 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 434
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 38.1 bits (87), Expect = 0.59, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 38.1 bits (87), Expect = 0.59, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|194381714|dbj|BAG64226.1| unnamed protein product [Homo sapiens]
Length = 591
Score = 38.1 bits (87), Expect = 0.59, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 185 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 222
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 38.1 bits (87), Expect = 0.60, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 266 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 303
>gi|225427185|ref|XP_002279685.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic [Vitis
vinifera]
Length = 288
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S G+ F+++D E+A A + D E +GRII VE +K
Sbjct: 128 SRGYAFVTMDSGEEAQAVVEKFDSYELSGRIIRVEFAK 165
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
R+ S + + + ++ S + S G+GF S E+A+AAI LD E GR +H++ S
Sbjct: 205 REFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAISALDGKELMGRPVHLKFS 264
Query: 67 KST 69
T
Sbjct: 265 VKT 267
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 38.1 bits (87), Expect = 0.60, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|22299798|ref|NP_683045.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
gi|22295982|dbj|BAC09807.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
Length = 94
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D + +AAI LD EW GR + V K++
Sbjct: 43 GFGFVEMSSDAEEEAAIADLDGAEWMGRQLKVNKARP 79
>gi|440684828|ref|YP_007159623.1| RNP-1 like RNA-binding protein [Anabaena cylindrica PCC 7122]
gi|428681947|gb|AFZ60713.1| RNP-1 like RNA-binding protein [Anabaena cylindrica PCC 7122]
Length = 102
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + DE+ AI LD EW GR + V K+K
Sbjct: 43 GFGFVEMGTDEEETTAIDALDGAEWMGRDLKVNKAKP 79
>gi|427720688|ref|YP_007068682.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
gi|427353124|gb|AFY35848.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
Length = 99
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D + AAI LD EW GR + V K+K
Sbjct: 43 GFGFVEMGTDAEETAAIEALDGAEWMGRDLKVNKAKP 79
>gi|302785788|ref|XP_002974665.1| hypothetical protein SELMODRAFT_102224 [Selaginella moellendorffii]
gi|300157560|gb|EFJ24185.1| hypothetical protein SELMODRAFT_102224 [Selaginella moellendorffii]
Length = 232
Score = 38.1 bits (87), Expect = 0.61, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 4 KASRDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
K D SK +++ L+ + +S GFGF++L+ +DA+ I+ L + GRII V
Sbjct: 65 KDLEDYFSKEGKVVECRLVVDPRSHESRGFGFVALESLDDAERCIKRLHHSNLEGRIITV 124
Query: 64 EKSKST 69
EK++ +
Sbjct: 125 EKARRS 130
>gi|170076900|ref|YP_001733538.1| RNA-binding protein [Synechococcus sp. PCC 7002]
gi|169884569|gb|ACA98282.1| RNA-binding protein [Synechococcus sp. PCC 7002]
Length = 84
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + DE+ D AI LD W GR + V K++
Sbjct: 43 GFGFVEMSNDEEEDKAIEALDGASWMGRDMKVNKARP 79
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 38.1 bits (87), Expect = 0.61, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|401623280|gb|EJS41385.1| nop4p [Saccharomyces arboricola H-6]
Length = 683
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 14 YQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+ ++ +++ K +N+ S GFGF+S ++D A+ +T++NG I+ V+ +K
Sbjct: 49 FAPIKHAVVVKDVNKRSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDVAK 102
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 38.1 bits (87), Expect = 0.61, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 250 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 287
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 38.1 bits (87), Expect = 0.61, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 165 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 202
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 38.1 bits (87), Expect = 0.61, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 193 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 230
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 38.1 bits (87), Expect = 0.62, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 171 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 208
>gi|223944069|gb|ACN26118.1| unknown [Zea mays]
gi|413956219|gb|AFW88868.1| hypothetical protein ZEAMMB73_204329 [Zea mays]
Length = 315
Score = 38.1 bits (87), Expect = 0.62, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+++ S++ R+S GFGF+++ +DAD I+ LD + GR+I VEK+K
Sbjct: 65 EVIDASVVYDPWTRESRGFGFVTMAAVKDADRCIKYLDRSVLQGRVITVEKAK 117
>gi|223936242|ref|ZP_03628155.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223895104|gb|EEF61552.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 103
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 19 LSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++L+ + + GFGF+++ E A+AAI L+ EW GR + V +++
Sbjct: 32 VNLIMDKMTGRARGFGFVTMATAEGAEAAIADLNGKEWQGRALTVNEARP 81
>gi|71000080|ref|XP_754757.1| glycine-rich RNA-binding protein [Aspergillus fumigatus Af293]
gi|66852394|gb|EAL92719.1| glycine-rich RNA-binding protein, putative [Aspergillus fumigatus
Af293]
gi|159127765|gb|EDP52880.1| glycine-rich RNA-binding protein, putative [Aspergillus fumigatus
A1163]
Length = 118
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 12 KTYQLLRLSLLSKS--LNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+ Y ++ +++ K NR S GFGF+ D +ADAA+ ++ E++GR I V+K+
Sbjct: 23 EPYGVVEEAIVVKDRDTNR-SRGFGFVRFSSDTEADAAMDAMNNQEFDGRTIRVDKA 78
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 38.1 bits (87), Expect = 0.63, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 166 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 203
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 38.1 bits (87), Expect = 0.64, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 166 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 203
>gi|307154466|ref|YP_003889850.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7822]
gi|306984694|gb|ADN16575.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7822]
Length = 98
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
GF F+ ++ E DAAI TLD EW GR + V K++
Sbjct: 43 GFAFVEMETPEMEDAAISTLDGAEWMGRELKVNKAR 78
>gi|119492333|ref|XP_001263582.1| glycine-rich RNA-binding protein, putative [Neosartorya fischeri
NRRL 181]
gi|119411742|gb|EAW21685.1| glycine-rich RNA-binding protein, putative [Neosartorya fischeri
NRRL 181]
Length = 118
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 12 KTYQLLRLSLLSKSLNRD-SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+ Y ++ +++ K + + S GFGF+ D +ADAA+ ++ E++GR I V+K+
Sbjct: 23 EPYGVVEEAIVVKDRDTNRSRGFGFVRFSSDTEADAAMDAMNNQEFDGRTIRVDKA 78
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 38.1 bits (87), Expect = 0.66, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 38.1 bits (87), Expect = 0.67, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|15639347|ref|NP_218796.1| RNA-binding protein, [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189025589|ref|YP_001933361.1| RNA-binding protein [Treponema pallidum subsp. pallidum SS14]
gi|408502236|ref|YP_006869680.1| putative RNA-binding protein [Treponema pallidum subsp. pallidum
str. Mexico A]
gi|3322634|gb|AAC65342.1| RNA-binding protein, putative [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189018164|gb|ACD70782.1| possible RNA-binding protein [Treponema pallidum subsp. pallidum
SS14]
gi|408475599|gb|AFU66364.1| putative RNA-binding protein [Treponema pallidum subsp. pallidum
str. Mexico A]
Length = 105
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
++L ++++ L + S GFGF+ ++ E A+ I L+E E+ GR + V
Sbjct: 44 EVLSVAVIKDKLTQRSKGFGFVEMESAESAELVINELNEKEFEGRRLRV 92
>gi|346978360|gb|EGY21812.1| glycine-rich RNA-binding protein [Verticillium dahliae VdLs.17]
Length = 175
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ +DEDA AI ++ E++GR I V+++
Sbjct: 42 SRGFGFVRYSQDEDAQKAIDAMNNVEFDGRTIRVDRA 78
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 38.1 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E NG++I V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKVIFVGRAQ 267
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 38.1 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 38.1 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|193212689|ref|YP_001998642.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
gi|193086166|gb|ACF11442.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
Length = 88
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
RD S+ + + S++ + S GFGF+ + DE+A+ AI +L+E++ R I V ++
Sbjct: 18 RDAFSEFGDVAKASVIMDKFSGRSKGFGFVEMTNDEEANEAISSLNESKLGSRNIKVNEA 77
Query: 67 K 67
K
Sbjct: 78 K 78
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 38.1 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 38.1 bits (87), Expect = 0.69, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 276 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 313
>gi|427416267|ref|ZP_18906450.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
gi|425758980|gb|EKU99832.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
Length = 89
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+S+ + + AI L+ TEW GR + V K+K+
Sbjct: 43 GFGFVSMGAESEETEAIEALNGTEWMGRELKVNKAKT 79
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 38.1 bits (87), Expect = 0.69, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|56752106|ref|YP_172807.1| RRM type RNA-binding protein [Synechococcus elongatus PCC 6301]
gi|81300808|ref|YP_401016.1| RNA-binding region RNP-1 [Synechococcus elongatus PCC 7942]
gi|56687065|dbj|BAD80287.1| RRM type RNA-binding protein [Synechococcus elongatus PCC 6301]
gi|81169689|gb|ABB58029.1| RNA-binding region RNP-1 [Synechococcus elongatus PCC 7942]
Length = 95
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 19 LSLLSKSLNRDS---HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+S +S ++R++ GF F+ ++ D DAAI LD EW GR + V K++
Sbjct: 27 VSRVSLPVDRETGRLRGFAFIEMEEDAHEDAAISELDGAEWFGRQLRVSKARP 79
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQ 267
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
Q+L + +++ + S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 216 QILSVKVMTDEGGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQ 267
>gi|388518723|gb|AFK47423.1| unknown [Medicago truncatula]
Length = 340
Score = 38.1 bits (87), Expect = 0.71, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 34/52 (65%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+++ + L+ R+S GFGF+++D E+AD ++ L+ + GR+I VEK+
Sbjct: 70 KVVDVHLVVDPWTRESRGFGFVTMDTLEEADRCVKYLNRSVLEGRVITVEKA 121
>gi|357157795|ref|XP_003577917.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 38.1 bits (87), Expect = 0.71, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 16 LLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+LR ++ + S FGF+++ E+A+AAI +L+ETE GR I V ++S
Sbjct: 95 VLRADVMYDKYSGRSRRFGFVTMSSVEEANAAIESLNETEVGGRKIKVNVTES 147
>gi|342889186|gb|EGU88353.1| hypothetical protein FOXB_01152 [Fusarium oxysporum Fo5176]
Length = 170
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ ++ DA AI T++ E++GR I V+K+
Sbjct: 42 SRGFGFVRYTQEGDAQKAIATMNNVEFDGRTIRVDKA 78
>gi|398398788|ref|XP_003852851.1| hypothetical protein MYCGRDRAFT_70735 [Zymoseptoria tritici IPO323]
gi|339472733|gb|EGP87827.1| hypothetical protein MYCGRDRAFT_70735 [Zymoseptoria tritici IPO323]
Length = 205
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
Q+ + +++ RDS GFGF+ + ++ADAA L + GR +EK++
Sbjct: 108 QVEKCNIMRDPHTRDSRGFGFVKMVTSDEADAAKEALQGEVYEGRTFSIEKAR 160
>gi|310793386|gb|EFQ28847.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 171
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ +D DA AI ++ E++GR I V+K+
Sbjct: 42 SRGFGFVRYTQDGDAQKAISAMNNVEFDGRTIRVDKA 78
>gi|284929630|ref|YP_003422152.1| RRM domain-containing RNA-binding protein [cyanobacterium UCYN-A]
gi|284810074|gb|ADB95771.1| RRM domain-containing RNA-binding protein [cyanobacterium UCYN-A]
Length = 96
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
GF F+ ++ D+ + AI TLD EW GR + V K+K
Sbjct: 43 GFAFVEMNSDDQEEQAISTLDGAEWMGRTLKVNKAK 78
>gi|428207498|ref|YP_007091851.1| RNP-1 like RNA-binding protein [Chroococcidiopsis thermalis PCC
7203]
gi|428009419|gb|AFY87982.1| RNP-1 like RNA-binding protein [Chroococcidiopsis thermalis PCC
7203]
Length = 98
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ +D D + AAI LD EW GR + V K+K
Sbjct: 43 GFAFVEMDTDTEETAAIDALDGAEWMGRNLKVNKAKP 79
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 38.1 bits (87), Expect = 0.72, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 198 SKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQ 235
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 38.1 bits (87), Expect = 0.73, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Query: 23 SKSLNRD-----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S SL RD S GFGF++ EDA A+ L+E E++G+ ++V +++
Sbjct: 270 SSSLARDQETGKSRGFGFVNFTSHEDASKAVEELNEKEFHGQNLYVGRAQ 319
>gi|338175402|ref|YP_004652212.1| hypothetical protein PUV_14080 [Parachlamydia acanthamoebae UV-7]
gi|336479760|emb|CCB86358.1| putative uncharacterized protein [Parachlamydia acanthamoebae
UV-7]
Length = 111
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 12 KTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
K +++ + +++ S GFGF+ ++ EDAD AIR L+ET R I V
Sbjct: 25 KIGKVVSVKIITDQYTGKSKGFGFVEMESSEDADKAIRELNETAVLDRNIRV 76
>gi|332663699|ref|YP_004446487.1| RNP-1 like RNA-binding protein [Haliscomenobacter hydrossis DSM
1100]
gi|332332513|gb|AEE49614.1| RNP-1 like RNA-binding protein [Haliscomenobacter hydrossis DSM
1100]
Length = 208
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + D++A AAI L+ET+++G I +K++
Sbjct: 41 SRGFGFVEMPNDDEAQAAIDALNETDFDGNTIVCKKAEP 79
>gi|189347593|ref|YP_001944122.1| RNP-1 like RNA-binding protein [Chlorobium limicola DSM 245]
gi|189341740|gb|ACD91143.1| RNP-1 like RNA-binding protein [Chlorobium limicola DSM 245]
Length = 90
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 20 SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S+++ S GFGF+ + + +A AI +L++++ NGR I V ++K
Sbjct: 31 SVITDKFTGRSKGFGFVEMPNNAEASEAISSLNDSDLNGRTIKVNEAKP 79
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 38.1 bits (87), Expect = 0.74, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|297844820|ref|XP_002890291.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297336133|gb|EFH66550.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 158
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF++ D EDA+ A++ + E +GRII V + S
Sbjct: 76 SRGFGFVTYDSIEDANNAMQCMHNKELDGRIIGVSPADS 114
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 38.1 bits (87), Expect = 0.74, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|427738521|ref|YP_007058065.1| RRM domain-containing RNA-binding protein [Rivularia sp. PCC
7116]
gi|427373562|gb|AFY57518.1| RRM domain-containing RNA-binding protein [Rivularia sp. PCC
7116]
Length = 91
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 25 SLNRDS---HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++RD+ GF F+ + DE AI +LD EW GR + V K+K
Sbjct: 33 PMDRDAGRIRGFAFVEMGNDEQETTAIESLDGAEWMGRSLRVNKAKP 79
>gi|428320405|ref|YP_007118287.1| RNP-1 like RNA-binding protein [Oscillatoria nigro-viridis PCC
7112]
gi|428244085|gb|AFZ09871.1| RNP-1 like RNA-binding protein [Oscillatoria nigro-viridis PCC
7112]
Length = 95
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ + D DAAI LD EW GR + V K+K
Sbjct: 42 RGFAFVEMMEDAQEDAAIAELDGAEWMGRPLRVNKAKP 79
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 38.1 bits (87), Expect = 0.75, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 38.1 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
Q+L + +++ + S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 191 QILSVKVMTDEGGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQ 242
>gi|322711864|gb|EFZ03437.1| RNA recognition motif containing protein [Metarhizium anisopliae
ARSEF 23]
Length = 731
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 28 RDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
++S G+GF++L +DA AA TLD+ EW G+ I ++
Sbjct: 81 KESRGYGFVTLADSDDALAAKTTLDKAEWEGKRIRID 117
>gi|297267337|ref|XP_001109416.2| PREDICTED: RNA-binding protein 4 isoform 5 [Macaca mulatta]
Length = 693
Score = 37.7 bits (86), Expect = 0.77, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 442 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 477
>gi|282890465|ref|ZP_06298988.1| hypothetical protein pah_c022o030 [Parachlamydia acanthamoebae
str. Hall's coccus]
gi|281499462|gb|EFB41758.1| hypothetical protein pah_c022o030 [Parachlamydia acanthamoebae
str. Hall's coccus]
Length = 113
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 12 KTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
K +++ + +++ S GFGF+ ++ EDAD AIR L+ET R I V
Sbjct: 27 KIGKVVSVKIITDQYTGKSKGFGFVEMESSEDADKAIRELNETAVLDRNIRV 78
>gi|134300357|ref|YP_001113853.1| RNP-1-like RNA-binding protein [Desulfotomaculum reducens MI-1]
gi|134053057|gb|ABO51028.1| RNP-1-like RNA-binding protein [Desulfotomaculum reducens MI-1]
Length = 85
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ ++ D DAD I L+ TE GR+I V ++KS
Sbjct: 42 SRGFGFVEVN-DTDADKMIAALNGTELGGRVITVNEAKS 79
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 37.7 bits (86), Expect = 0.77, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NGR ++V +++
Sbjct: 217 SKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQ 254
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 37.7 bits (86), Expect = 0.77, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|338706322|ref|YP_004673090.1| putative RNA-binding protein [Treponema paraluiscuniculi Cuniculi
A]
gi|378972859|ref|YP_005221463.1| putative RNA-binding protein [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|378973926|ref|YP_005222532.1| putative RNA-binding protein [Treponema pallidum subsp. pertenue
str. Gauthier]
gi|378974988|ref|YP_005223596.1| putative RNA-binding protein [Treponema pallidum subsp. pallidum
DAL-1]
gi|378981835|ref|YP_005230140.1| putative RNA-binding protein [Treponema pallidum subsp. pertenue
str. CDC2]
gi|384421880|ref|YP_005631239.1| glycine-rich RNA-binding protein 2 [Treponema pallidum subsp.
pallidum str. Chicago]
gi|291059746|gb|ADD72481.1| glycine-rich RNA-binding protein 2 [Treponema pallidum subsp.
pallidum str. Chicago]
gi|335344383|gb|AEH40299.1| probable RNA-binding protein [Treponema paraluiscuniculi Cuniculi
A]
gi|374677182|gb|AEZ57475.1| putative RNA-binding protein [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|374678252|gb|AEZ58544.1| putative RNA-binding protein [Treponema pallidum subsp. pertenue
str. CDC2]
gi|374679321|gb|AEZ59612.1| putative RNA-binding protein [Treponema pallidum subsp. pertenue
str. Gauthier]
gi|374680386|gb|AEZ60676.1| putative RNA-binding protein [Treponema pallidum subsp. pallidum
DAL-1]
Length = 89
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
++L ++++ L + S GFGF+ ++ E A+ I L+E E+ GR + V
Sbjct: 28 EVLSVAVIKDKLTQRSKGFGFVEMESAESAELVINELNEKEFEGRRLRV 76
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 37.7 bits (86), Expect = 0.77, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 5/50 (10%)
Query: 23 SKSLNRD-----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S SL RD S GFGF++ EDA A++ L+E E++G+ ++V +++
Sbjct: 270 SSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQ 319
>gi|392593257|gb|EIW82582.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 136
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF++ E+A+AA+ +D+TE +GR I V + +
Sbjct: 43 SRGFGFVTFTTAEEANAAMGQMDQTELDGRTIRVNVANA 81
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 37.7 bits (86), Expect = 0.78, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 227 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 264
>gi|334118594|ref|ZP_08492683.1| RNP-1 like RNA-binding protein [Microcoleus vaginatus FGP-2]
gi|333459601|gb|EGK88214.1| RNP-1 like RNA-binding protein [Microcoleus vaginatus FGP-2]
Length = 95
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ + D DAAI LD EW GR + V K+K
Sbjct: 43 GFAFVEMMEDAQEDAAIAELDGAEWMGRPLRVNKAKP 79
>gi|302338833|ref|YP_003804039.1| RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM
11293]
gi|301636018|gb|ADK81445.1| RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM
11293]
Length = 93
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ +++D+ A+AAI LD E++GR + V ++
Sbjct: 43 SRGFGFVEMEQDDAAEAAISALDGYEFDGRRLRVNEA 79
>gi|302767104|ref|XP_002966972.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
gi|300164963|gb|EFJ31571.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
Length = 654
Score = 37.7 bits (86), Expect = 0.79, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 33/55 (60%)
Query: 13 TYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
T+ ++ ++ K N S GFGF++ D E A AA+ T++ ++ R I+V +++
Sbjct: 238 TFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETMNNSQLGSRTIYVGRAQ 292
>gi|212533925|ref|XP_002147119.1| peptidyl prolyl cis-trans isomerase Cyclophilin, putative
[Talaromyces marneffei ATCC 18224]
gi|210072483|gb|EEA26572.1| peptidyl prolyl cis-trans isomerase Cyclophilin, putative
[Talaromyces marneffei ATCC 18224]
Length = 153
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 15 QLLRLSLLSKSL--NRDSH-GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+++ +SL L + D+H GFG++ + +DA AI +D++E GRII V +K
Sbjct: 34 EIVDVSLPKPDLPSSTDNHRGFGYVEFEVPQDAKEAIDNMDQSELYGRIIKVAAAKP 90
>gi|386747352|ref|YP_006220560.1| RNA-binding protein [Helicobacter cetorum MIT 99-5656]
gi|384553594|gb|AFI05350.1| RNA-binding protein [Helicobacter cetorum MIT 99-5656]
Length = 82
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
++ + L+S + GFGF+ + + E+A+ AI LD T++ GRII V
Sbjct: 27 EVFSVKLISDRETKRPKGFGFVEMQK-ENANEAIAKLDNTDFMGRIIRV 74
>gi|334349575|ref|XP_003342221.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 707
Score = 37.7 bits (86), Expect = 0.79, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF++ +R EDA A+ ++ E NG+ I+V +++
Sbjct: 299 SKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYVGRAQ 336
>gi|434395314|ref|YP_007130261.1| RNP-1 like RNA-binding protein [Gloeocapsa sp. PCC 7428]
gi|428267155|gb|AFZ33101.1| RNP-1 like RNA-binding protein [Gloeocapsa sp. PCC 7428]
Length = 96
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ + D DAAI LD EW GR + V K+K
Sbjct: 42 RGFAFVDMTEDAQEDAAITELDGAEWMGRQLRVNKAKP 79
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 37.7 bits (86), Expect = 0.80, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SRGFGFVSFERHEDAQKAVDEMNGKEMNGKPIYVGRAQ 267
>gi|357167535|ref|XP_003581210.1| PREDICTED: 40S ribosomal protein S19, mitochondrial-like
[Brachypodium distachyon]
Length = 137
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 33/54 (61%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
Q+L ++++ + S GFGF+ +E+A+ A ++ NGR+I+V+ +K+
Sbjct: 61 QVLEATIVTDKMTNRSKGFGFVKFASEEEANKARDEMNGKVLNGRVIYVDIAKA 114
>gi|345488332|ref|XP_001606003.2| PREDICTED: hypothetical protein LOC100122397 [Nasonia vitripennis]
Length = 882
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S +G++++ +DA+ I+ L+ TE +GR+I VEK+K
Sbjct: 418 SRCYGYVTMSSSDDAEKCIQNLNRTELHGRVISVEKAK 455
>gi|453088689|gb|EMF16729.1| RRM_1-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 175
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 12 KTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
K Q+ + +++ R+S GFGF+ + ++ADAA L + GR + +EK++
Sbjct: 99 KYGQVEKCNIMKDPHTRESRGFGFVKMVTSDEADAAKEALQGEVYEGRTLSIEKAR 154
>gi|409993905|ref|ZP_11277031.1| RNA-binding region RNP-1 [Arthrospira platensis str. Paraca]
gi|291569285|dbj|BAI91557.1| RNA-binding protein [Arthrospira platensis NIES-39]
gi|409935253|gb|EKN76791.1| RNA-binding region RNP-1 [Arthrospira platensis str. Paraca]
Length = 103
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ +D + + +AI LD EW GR + V K+K
Sbjct: 43 GFGFVEMDTEAEEQSAIDALDGAEWCGRDLRVNKAKP 79
>gi|119486604|ref|ZP_01620654.1| RNA-binding region [Lyngbya sp. PCC 8106]
gi|119456221|gb|EAW37353.1| RNA-binding region [Lyngbya sp. PCC 8106]
Length = 100
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GF F+ +D D + +AI LD EW GR + V K+K
Sbjct: 41 SRGFAFVEMDTDSEETSAIEELDGAEWMGRDLKVNKAKP 79
>gi|212533927|ref|XP_002147120.1| peptidyl prolyl cis-trans isomerase Cyclophilin, putative
[Talaromyces marneffei ATCC 18224]
gi|210072484|gb|EEA26573.1| peptidyl prolyl cis-trans isomerase Cyclophilin, putative
[Talaromyces marneffei ATCC 18224]
Length = 152
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 15 QLLRLSLLSKSL--NRDSH-GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+++ +SL L + D+H GFG++ + +DA AI +D++E GRII V +K
Sbjct: 34 EIVDVSLPKPDLPSSTDNHRGFGYVEFEVPQDAKEAIDNMDQSELYGRIIKVAAAKP 90
>gi|209528246|ref|ZP_03276711.1| RNP-1 like RNA-binding protein [Arthrospira maxima CS-328]
gi|376004999|ref|ZP_09782569.1| Glycine-rich RNA-binding protein, rbp-like [Arthrospira sp. PCC
8005]
gi|423065550|ref|ZP_17054340.1| RNP-1 like RNA-binding protein [Arthrospira platensis C1]
gi|209491318|gb|EDZ91708.1| RNP-1 like RNA-binding protein [Arthrospira maxima CS-328]
gi|375326593|emb|CCE18322.1| Glycine-rich RNA-binding protein, rbp-like [Arthrospira sp. PCC
8005]
gi|406712993|gb|EKD08168.1| RNP-1 like RNA-binding protein [Arthrospira platensis C1]
Length = 100
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ +D + + +AI LD EW GR + V K+K
Sbjct: 43 GFGFVEMDTEAEEQSAIDALDGAEWCGRDLRVNKAKP 79
>gi|261749498|ref|YP_003257184.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497591|gb|ACX84041.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 90
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
N+ S GFGF+ + +E+A AI L+ TE+ GR I V
Sbjct: 43 NKRSKGFGFIEMSNEENAKQAIEKLNGTEFMGRNIIV 79
>gi|15238546|ref|NP_200794.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332009860|gb|AED97243.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 157
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
GFGF++ + ++DA A++ L+ NGR+I VE +K
Sbjct: 106 PKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAK 143
>gi|351724785|ref|NP_001238605.1| uncharacterized protein LOC100527350 [Glycine max]
gi|255632145|gb|ACU16425.1| unknown [Glycine max]
Length = 174
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 21 LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
L+ + R S GF F+++D EDA+ I+ L+++ GR I VE++
Sbjct: 100 LVVEPRTRISRGFAFITMDTVEDANRCIKYLNQSVLEGRYITVERN 145
>gi|212546539|ref|XP_002153423.1| glycine-rich RNA-binding protein, putative [Talaromyces marneffei
ATCC 18224]
gi|210064943|gb|EEA19038.1| glycine-rich RNA-binding protein, putative [Talaromyces marneffei
ATCC 18224]
Length = 135
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
S GFGF+ D +ADAAI ++ +++GR+I V+++ +
Sbjct: 42 SRGFGFVRFSTDAEADAAIEGMNNQDFDGRVIRVDRASNN 81
>gi|428305785|ref|YP_007142610.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
gi|428247320|gb|AFZ13100.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
Length = 102
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D + DAAI LD EW R + V K+K
Sbjct: 41 PRGFGFVEMSSDAEEDAAIEALDGAEWMERDLKVNKAKP 79
>gi|428304645|ref|YP_007141470.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
gi|428246180|gb|AFZ11960.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
Length = 103
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D + AAI LD EW GR + V K+K
Sbjct: 42 RGFGFVEMSSDAEETAAIDALDGAEWMGRDLKVNKAKP 79
>gi|302755232|ref|XP_002961040.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
gi|300171979|gb|EFJ38579.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
Length = 625
Score = 37.7 bits (86), Expect = 0.85, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 33/55 (60%)
Query: 13 TYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
T+ ++ ++ K N S GFGF++ D E A AA+ T++ ++ R I+V +++
Sbjct: 237 TFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETMNNSQLGSRTIYVGRAQ 291
>gi|411119073|ref|ZP_11391453.1| RRM domain-containing RNA-binding protein [Oscillatoriales
cyanobacterium JSC-12]
gi|410710936|gb|EKQ68443.1| RRM domain-containing RNA-binding protein [Oscillatoriales
cyanobacterium JSC-12]
Length = 85
Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
R+SL GF F+ L+ D D AI LD EW GR + V K+K
Sbjct: 29 RVSLPMDRETGKMRGFAFVELEEDAHEDTAISELDGAEWMGRQLKVNKAKP 79
>gi|297806641|ref|XP_002871204.1| hypothetical protein ARALYDRAFT_487428 [Arabidopsis lyrata subsp.
lyrata]
gi|297317041|gb|EFH47463.1| hypothetical protein ARALYDRAFT_487428 [Arabidopsis lyrata subsp.
lyrata]
Length = 144
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 34/58 (58%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
SK Q++ ++ ++ S GFGF++ ++A A+ + ++NGR+I V+ +K+
Sbjct: 55 SKCGQVVEAQIVMDRVSDRSKGFGFVTFASVDEAQKALMEFNGQQFNGRVIFVDYAKA 112
>gi|399023681|ref|ZP_10725736.1| RRM domain-containing RNA-binding protein [Chryseobacterium sp.
CF314]
gi|398082380|gb|EJL73134.1| RRM domain-containing RNA-binding protein [Chryseobacterium sp.
CF314]
Length = 121
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ ++ DE+ AI +L++ E+NG++++V ++K
Sbjct: 41 SRGFGFIEMN-DEEGQQAIDSLNQKEFNGKVLNVSEAKP 78
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 37.7 bits (86), Expect = 0.88, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQ 267
>gi|198415693|ref|XP_002128145.1| PREDICTED: similar to RNA binding motif protein 19 [Ciona
intestinalis]
Length = 766
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 16 LLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
L +S+ +++ S GFGF++ E A A +LD T + GR+IH+ +K+
Sbjct: 279 LSEVSIPVDDMSKKSVGFGFITYMMPEHALKAFNSLDGTAFQGRMIHILPAKA 331
>gi|410045417|ref|XP_003951989.1| PREDICTED: RNA-binding protein 4B isoform 1 [Pan troglodytes]
gi|426369355|ref|XP_004051658.1| PREDICTED: RNA-binding protein 4B isoform 2 [Gorilla gorilla
gorilla]
gi|441607717|ref|XP_004087894.1| PREDICTED: RNA-binding protein 4B isoform 2 [Nomascus leucogenys]
Length = 143
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRII 61
+ F+ ++R EDA AIR LD TE+ GRII
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGRII 141
>gi|358391693|gb|EHK41097.1| hypothetical protein TRIATDRAFT_301780 [Trichoderma atroviride
IMI 206040]
Length = 171
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ ++ DA AAI ++ E++GR I V+K+
Sbjct: 42 SRGFGFVRFVQEADAQAAIDAMNNVEFDGRTIRVDKA 78
>gi|326532684|dbj|BAJ89187.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 126
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65
+++ S++ R+S GFGF+++ ++A+ I+ LD + GR+I VEK
Sbjct: 69 EVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYLDSSVLEGRVITVEK 119
>gi|224053871|ref|XP_002298021.1| predicted protein [Populus trichocarpa]
gi|222845279|gb|EEE82826.1| predicted protein [Populus trichocarpa]
Length = 74
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65
++L L++ R+ GF F++++ EDAD I+ L+ + GR+I +EK
Sbjct: 22 KVLECHLVTDPDTREFRGFAFVTVETTEDADRCIKYLNCSVLEGRLITMEK 72
>gi|357141252|ref|XP_003572153.1| PREDICTED: scaffold attachment factor B1-like [Brachypodium
distachyon]
Length = 275
Score = 37.7 bits (86), Expect = 0.91, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 28 RDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
++S GF F+S+D EDA I+ L T GR++ VEK+K T
Sbjct: 125 KESRGFAFVSMDTVEDARRCIKRLHRTVLEGRLVTVEKAKRT 166
>gi|342882418|gb|EGU83098.1| hypothetical protein FOXB_06359 [Fusarium oxysporum Fo5176]
Length = 113
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF++ E+A AAI ++E E+ GR I V ++
Sbjct: 42 SRGFGFVTFSSQEEASAAIEAMNEQEFEGRQIRVSEA 78
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 37.7 bits (86), Expect = 0.92, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ ++V +++
Sbjct: 230 SKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQ 267
>gi|426252100|ref|XP_004019756.1| PREDICTED: RNA-binding protein 4 isoform 1 [Ovis aries]
Length = 361
Score = 37.7 bits (86), Expect = 0.94, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|406883357|gb|EKD30966.1| hypothetical protein ACD_77C00438G0003 [uncultured bacterium]
Length = 117
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + + +A AI LD+ E++G++I V +K
Sbjct: 41 SRGFGFVEMPTEAEAKKAIEELDQAEYDGKVISVNVAKP 79
>gi|395851687|ref|XP_003798384.1| PREDICTED: RNA-binding protein 4B [Otolemur garnettii]
Length = 359
Score = 37.7 bits (86), Expect = 0.95, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 37.7 bits (86), Expect = 0.95, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|444335495|ref|YP_007391864.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Blatta
orientalis) str. Tarazona]
gi|444299874|gb|AGD98111.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Blatta
orientalis) str. Tarazona]
Length = 90
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
N+ S GFGF+ + +E+A AI L+ TE+ GR I V
Sbjct: 43 NKRSKGFGFIEMSNEENAKQAIEKLNGTEFMGRNIIV 79
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 37.7 bits (86), Expect = 0.98, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 205 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 242
>gi|66801305|ref|XP_629578.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|60462955|gb|EAL61152.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 306
Score = 37.7 bits (86), Expect = 0.98, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
RD + +++ ++L ++S GFGF++ ++A AI+ LD T+ +G I VEKS
Sbjct: 88 RDTFASIGKVIDCTILLDPNTKESRGFGFVTYSSGDEAQDAIQRLDSTKIDGNTIRVEKS 147
Query: 67 KST 69
K +
Sbjct: 148 KRS 150
>gi|425781282|gb|EKV19258.1| hypothetical protein PDIG_04180 [Penicillium digitatum PHI26]
gi|425783364|gb|EKV21218.1| hypothetical protein PDIP_08850 [Penicillium digitatum Pd1]
Length = 162
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ D +AD+A+ ++ E++GR+I V+K+
Sbjct: 42 SRGFGFVRFATDAEADSALGAMNNQEFDGRVIRVDKA 78
>gi|388515619|gb|AFK45871.1| unknown [Medicago truncatula]
Length = 270
Score = 37.7 bits (86), Expect = 0.98, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 8 DRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
D SK ++ L+ + R S GF F+++D EDA+ I+ L+++ GR I VE+S+
Sbjct: 80 DHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAERCIKHLNQSVLEGRYITVERSR 139
>gi|357517877|ref|XP_003629227.1| ELAV-like protein [Medicago truncatula]
gi|355523249|gb|AET03703.1| ELAV-like protein [Medicago truncatula]
Length = 270
Score = 37.7 bits (86), Expect = 0.98, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 8 DRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
D SK ++ L+ + R S GF F+++D EDA+ I+ L+++ GR I VE+S+
Sbjct: 80 DHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAERCIKHLNQSVLEGRYITVERSR 139
>gi|298490385|ref|YP_003720562.1| RNP-1 like RNA-binding protein ['Nostoc azollae' 0708]
gi|298232303|gb|ADI63439.1| RNP-1 like RNA-binding protein ['Nostoc azollae' 0708]
Length = 99
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++ R+ L ++ GF F+ + D DAAI LD EW GR + V K+K
Sbjct: 26 EVKRVVLPTERETGRMRGFAFVEMLEDAQEDAAITELDGAEWMGRQVRVNKAKP 79
>gi|123976178|ref|XP_001314467.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121896817|gb|EAY01957.1| hypothetical protein TVAG_430980 [Trichomonas vaginalis G3]
Length = 199
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
S FGF+ EDAD AI+ ++E E+ GR + +E
Sbjct: 75 SKSFGFVEFSTKEDADKAIKEMNEKEFEGRTLKIE 109
>gi|110597824|ref|ZP_01386107.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
ferrooxidans DSM 13031]
gi|110340549|gb|EAT59032.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
ferrooxidans DSM 13031]
Length = 90
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 20 SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S+++ S GFGF+ + D +A +AI L++++ NGR I V ++K
Sbjct: 31 SVINDKFTGRSKGFGFVEMANDAEAASAIADLNDSDLNGRTIKVNEAKP 79
>gi|425765484|gb|EKV04163.1| hypothetical protein PDIP_88470 [Penicillium digitatum Pd1]
gi|425778342|gb|EKV16473.1| hypothetical protein PDIG_20660 [Penicillium digitatum PHI26]
Length = 136
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ DE+A AA+ ++ E++GR I V+K+
Sbjct: 42 SRGFGFVRFSTDEEATAAMNAMNNQEFDGRQIRVDKA 78
>gi|282896900|ref|ZP_06304906.1| RNA-binding region protein RNP-1 [Raphidiopsis brookii D9]
gi|281198309|gb|EFA73199.1| RNA-binding region protein RNP-1 [Raphidiopsis brookii D9]
Length = 92
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ + D DAAI LD EW GR + V K+K
Sbjct: 43 GFAFVEMIEDAQEDAAISELDGAEWMGRQLRVNKAKP 79
>gi|67540172|ref|XP_663860.1| hypothetical protein AN6256.2 [Aspergillus nidulans FGSC A4]
gi|40739450|gb|EAA58640.1| hypothetical protein AN6256.2 [Aspergillus nidulans FGSC A4]
gi|259479533|tpe|CBF69842.1| TPA: peptidyl prolyl cis-trans isomerase Cyclophilin, putative
(AFU_orthologue; AFUA_2G12990) [Aspergillus nidulans
FGSC A4]
Length = 153
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 15 QLLRLSLLSKSL--NRDSH-GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+++ ++L L + D+H GFG++ D EDA AI +D +E GR I V +K
Sbjct: 34 EVVDITLPKPDLPNSNDNHRGFGYVEFDSPEDAKEAIDNMDGSELYGRTIKVAPAKP 90
>gi|344246646|gb|EGW02750.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 127
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S GFGF+S ++ EDA A+ ++ E NG+ I+V
Sbjct: 66 SKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYV 99
>gi|242779149|ref|XP_002479384.1| peptidyl prolyl cis-trans isomerase Cyclophilin, putative
[Talaromyces stipitatus ATCC 10500]
gi|218723003|gb|EED22421.1| peptidyl prolyl cis-trans isomerase Cyclophilin, putative
[Talaromyces stipitatus ATCC 10500]
Length = 153
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 15 QLLRLSLLSKSL--NRDSH-GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+++ +SL L + D+H GFG++ + +DA AI +D++E GRII V +K
Sbjct: 34 EIVDVSLPKPDLPSSTDNHRGFGYVEFEIPQDAKEAIDNMDQSELYGRIIKVAAAKP 90
>gi|361128698|gb|EHL00628.1| putative Cold-inducible RNA-binding protein [Glarea lozoyensis
74030]
Length = 170
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ ++ DA+AAI ++ E++GR I V+K+
Sbjct: 42 SRGFGFVRYGQESDAEAAITAMNNIEFDGRTIRVDKA 78
>gi|297798340|ref|XP_002867054.1| hypothetical protein ARALYDRAFT_912788 [Arabidopsis lyrata subsp.
lyrata]
gi|297312890|gb|EFH43313.1| hypothetical protein ARALYDRAFT_912788 [Arabidopsis lyrata subsp.
lyrata]
Length = 160
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 21 LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
L+ + R S GF F+++D +DA+ I+ L+++ GR I VE+ S
Sbjct: 84 LVMEPRTRVSRGFAFVTMDSVKDAERCIKYLNQSVLEGRYITVERDASC 132
>gi|218245224|ref|YP_002370595.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 8801]
gi|257058256|ref|YP_003136144.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 8802]
gi|218165702|gb|ACK64439.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 8801]
gi|256588422|gb|ACU99308.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 8802]
Length = 94
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 25 SLNRDS---HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
++RD+ GF F+ ++ D+AI TLD EW GR + V K++
Sbjct: 33 PMDRDTGRMRGFAFVEMESPSQEDSAISTLDGAEWMGRTLKVNKAR 78
>gi|428205820|ref|YP_007090173.1| RNP-1 like RNA-binding protein [Chroococcidiopsis thermalis PCC
7203]
gi|428007741|gb|AFY86304.1| RNP-1 like RNA-binding protein [Chroococcidiopsis thermalis PCC
7203]
Length = 104
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ +D D ++AI LD EW GR + V K+K
Sbjct: 42 RGFAFVDMDEDAQEESAIAELDGAEWMGRQLRVNKAKP 79
>gi|83643064|ref|YP_431499.1| RNA-binding protein [Hahella chejuensis KCTC 2396]
gi|83631107|gb|ABC27074.1| RNA-binding protein (RRM domain) [Hahella chejuensis KCTC 2396]
Length = 90
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GF F+ + + +ADAAI+ L++T GR I V ++K
Sbjct: 41 SKGFAFVEMSNNSEADAAIKGLNDTALKGRNIKVNQAK 78
>gi|126654754|ref|ZP_01726288.1| RNA-binding region RNP-1 [Cyanothece sp. CCY0110]
gi|126623489|gb|EAZ94193.1| RNA-binding region RNP-1 [Cyanothece sp. CCY0110]
Length = 97
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
GF F+ + D+ + AI TLD EW GR + V K+K
Sbjct: 43 GFAFVEMTSDDQEEKAISTLDGAEWMGRTLKVNKAK 78
>gi|395544486|ref|XP_003774141.1| PREDICTED: RNA-binding protein 4-like [Sarcophilus harrisii]
Length = 393
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 34 GFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 144 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 178
>gi|374290274|ref|YP_005037327.1| putative RNA-binding protein [Blattabacterium sp. (Cryptocercus
punctulatus) str. Cpu]
gi|358377066|gb|AEU09254.1| putative RNA-binding protein [Blattabacterium sp. (Cryptocercus
punctulatus) str. Cpu]
Length = 89
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
N+ S GFGF+ + +E+A AI L+ TE+ GR I V
Sbjct: 43 NKRSKGFGFIEMSNEENAKQAIEKLNGTEFMGRNIIV 79
>gi|444510189|gb|ELV09524.1| RNA-binding protein 4B [Tupaia chinensis]
Length = 357
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|426252104|ref|XP_004019758.1| PREDICTED: RNA-binding protein 4B isoform 1 [Ovis aries]
Length = 365
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
>gi|354496142|ref|XP_003510186.1| PREDICTED: RNA-binding protein 4B [Cricetulus griseus]
gi|344250269|gb|EGW06373.1| RNA-binding protein 4B [Cricetulus griseus]
Length = 357
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|219130905|ref|XP_002185593.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217402933|gb|EEC42891.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 222
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
N S G G + DE+A AI+TL +TE NGR+I V + + T
Sbjct: 55 NGRSKGCGIVEYATDEEAQEAIKTLTDTELNGRMIFVREDRET 97
>gi|149725616|ref|XP_001496839.1| PREDICTED: RNA-binding protein 4B-like [Equus caballus]
Length = 359
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|126338772|ref|XP_001364800.1| PREDICTED: RNA-binding protein 4B-like [Monodelphis domestica]
Length = 365
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|178056236|ref|NP_001116660.1| RNA-binding protein 4B [Sus scrofa]
gi|122131878|sp|Q06AT9.1|RBM4B_PIG RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|115394774|gb|ABI97181.1| RBM30 [Sus scrofa]
Length = 359
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
>gi|291566709|dbj|BAI88981.1| RNA-binding protein [Arthrospira platensis NIES-39]
Length = 93
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + +++ AI LD EW GR + V K++
Sbjct: 41 SRGFGFVEMSSEDEEKVAINALDGAEWKGRSLKVNKARP 79
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
>gi|121705230|ref|XP_001270878.1| glycine-rich RNA-binding protein, putative [Aspergillus clavatus
NRRL 1]
gi|119399024|gb|EAW09452.1| glycine-rich RNA-binding protein, putative [Aspergillus clavatus
NRRL 1]
Length = 133
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ D DAD A+ ++ E++GR I V+K+
Sbjct: 42 SRGFGFVRFSSDSDADKAMDAMNNQEFDGRTIRVDKA 78
>gi|432091076|gb|ELK24288.1| RNA-binding protein 4B [Myotis davidii]
Length = 357
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|114052178|ref|NP_001039393.1| RNA-binding protein 4B [Bos taurus]
gi|86438058|gb|AAI12498.1| RNA binding motif protein 4B [Bos taurus]
gi|296471585|tpg|DAA13700.1| TPA: RNA binding motif protein 4B [Bos taurus]
Length = 359
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|395544458|ref|XP_003774127.1| PREDICTED: RNA-binding protein 4 [Sarcophilus harrisii]
Length = 364
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|351710884|gb|EHB13803.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 318
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|410974612|ref|XP_003993737.1| PREDICTED: RNA-binding protein 4B [Felis catus]
Length = 359
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|125563035|gb|EAZ08415.1| hypothetical protein OsI_30679 [Oryza sativa Indica Group]
Length = 226
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S FGF+++ E+A+AAI +L+ETE GR I V ++S
Sbjct: 110 SRRFGFVTMSTPEEANAAIESLNETEVGGRKIKVNVTES 148
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
>gi|308272084|emb|CBX28692.1| Glycine-rich RNA-binding protein 8 [uncultured Desulfobacterium
sp.]
Length = 127
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 19 LSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+S+++ + S GFGF+ + D +A AAI L+ E GR I+V +++
Sbjct: 30 VSIINDKYSGRSKGFGFVEMSSDAEAQAAIEGLNGKELKGRAINVNEARP 79
>gi|154494359|ref|ZP_02033679.1| hypothetical protein PARMER_03714 [Parabacteroides merdae ATCC
43184]
gi|423346931|ref|ZP_17324618.1| hypothetical protein HMPREF1060_02290 [Parabacteroides merdae
CL03T12C32]
gi|423725455|ref|ZP_17699592.1| hypothetical protein HMPREF1078_03481 [Parabacteroides merdae
CL09T00C40]
gi|154085803|gb|EDN84848.1| hypothetical protein PARMER_03714 [Parabacteroides merdae ATCC
43184]
gi|409218592|gb|EKN11560.1| hypothetical protein HMPREF1060_02290 [Parabacteroides merdae
CL03T12C32]
gi|409234579|gb|EKN27407.1| hypothetical protein HMPREF1078_03481 [Parabacteroides merdae
CL09T00C40]
Length = 80
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + DE A AI L+E E+ GR I +++++
Sbjct: 41 SKGFGFVEMPDDEAAKKAIAELNEAEYEGRQIVIKEARP 79
>gi|428777010|ref|YP_007168797.1| RNP-1 like RNA-binding protein [Halothece sp. PCC 7418]
gi|428691289|gb|AFZ44583.1| RNP-1 like RNA-binding protein [Halothece sp. PCC 7418]
Length = 90
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ ++ + D AI LD EW GR + V K++
Sbjct: 35 RGFGFVEMETESDEAPAIEALDGAEWMGRQLRVNKARP 72
>gi|262340986|ref|YP_003283841.1| RNA-binding protein [Blattabacterium sp. (Blattella germanica)
str. Bge]
gi|262272323|gb|ACY40231.1| putative RNA-binding protein [Blattabacterium sp. (Blattella
germanica) str. Bge]
Length = 90
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
N+ S GFGF+ + +E+A AI L+ TE+ GR I V ++
Sbjct: 43 NKRSKGFGFIEMSNEENAKQAIEKLNGTEFMGRNIIVSAARP 84
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
>gi|406866241|gb|EKD19281.1| glycine-rich RNA-binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 423
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ + DA+AAI ++ E++GR I V+K+
Sbjct: 200 SRGFGFVRYGSEADAEAAITAMNNIEFDGRTIRVDKA 236
>gi|328772428|gb|EGF82466.1| hypothetical protein BATDEDRAFT_86274 [Batrachochytrium
dendrobatidis JAM81]
Length = 586
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+++ EDA+ AI+ L+ TE+ GR I V K
Sbjct: 454 SRGFGFVTMATQEDANKAIKELNGTEFRGRKIEVRLDK 491
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S ++ EDA A+ ++ E+NG+ I+V +++
Sbjct: 535 SKGFGFVSYEKHEDAQRAVDEMNGKEFNGKRIYVGRAQ 572
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF++ +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYVGRAQ 267
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
>gi|425781538|gb|EKV19498.1| Ribosome biogenesis (Nop4), putative [Penicillium digitatum PHI26]
gi|425782769|gb|EKV20659.1| Ribosome biogenesis (Nop4), putative [Penicillium digitatum Pd1]
Length = 722
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 38/58 (65%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S++Y + ++S + S GFGF++ EDA++A++ + ++++G+II V+ ++S
Sbjct: 57 SQSYIIKHAVVVSDKETKVSKGFGFVTFADVEDAESALKEFNGSKFDGKIIRVDYAES 114
>gi|427382637|ref|ZP_18879357.1| hypothetical protein HMPREF9447_00390 [Bacteroides oleiciplenus
YIT 12058]
gi|425729882|gb|EKU92733.1| hypothetical protein HMPREF9447_00390 [Bacteroides oleiciplenus
YIT 12058]
Length = 130
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + DED AI L+ET++ G+ I V ++
Sbjct: 41 SRGFGFVEMPNDEDGQKAIDGLNETDFEGKTIAVSVARP 79
>gi|171912058|ref|ZP_02927528.1| RNA-binding region RNP-1 [Verrucomicrobium spinosum DSM 4136]
Length = 150
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 15 QLLRLSLLSKSLNRDS---HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
Q ++ +S +RD+ GF F+++D E DAAI+ L+ EW GR + V +++
Sbjct: 25 QYGAVTEVSLPTDRDTGRPRGFAFVAMDTKEAMDAAIKGLNGLEWMGRALTVNEARP 81
>gi|443919138|gb|ELU39394.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 364
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 37/60 (61%)
Query: 8 DRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
D K ++ + S++ +R+S GF F+++D E+A+AAI L +E G+ I VEK++
Sbjct: 207 DAFGKFGKVAKASVVYDPHSRESRGFAFVTMDTVEEAEAAIAGLHNSELAGKPITVEKAR 266
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
>gi|431910216|gb|ELK13289.1| RNA-binding protein 4B [Pteropus alecto]
Length = 359
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|427719544|ref|YP_007067538.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
gi|427351980|gb|AFY34704.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
Length = 101
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ ++ + + AI LD EW GR + V K+K
Sbjct: 43 GFGFVEMETEAEETKAIEALDNAEWMGRSLKVNKAKP 79
>gi|115478330|ref|NP_001062760.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|49387841|dbj|BAD26506.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|49388840|dbj|BAD26030.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|113630993|dbj|BAF24674.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|215695254|dbj|BAG90445.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737768|dbj|BAG96898.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222641205|gb|EEE69337.1| hypothetical protein OsJ_28655 [Oryza sativa Japonica Group]
Length = 245
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S FGF+++ E+A+AAI +L+ETE GR I V ++S
Sbjct: 110 SRRFGFVTMSTPEEANAAIESLNETEVGGRKIKVNVTES 148
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
>gi|331218002|ref|XP_003321679.1| hypothetical protein PGTG_03216 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309300669|gb|EFP77260.1| hypothetical protein PGTG_03216 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 217
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 7 RDRE---SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
RD E SK + + L+ R+ GFGF++++ + A+ AI +L+ TE+ G+ + V
Sbjct: 48 RDLEELFSKYGTVTKSQLMRDPHTREIRGFGFVTMETSDQAELAISSLNGTEFLGKTLSV 107
Query: 64 EKSKST 69
EK++ +
Sbjct: 108 EKARRS 113
>gi|351726252|ref|NP_001237888.1| uncharacterized protein LOC100500170 [Glycine max]
gi|255629542|gb|ACU15118.1| unknown [Glycine max]
Length = 238
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 21 LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
L+ + R S GF F++++ EDA+ I+ L+++ GR I +E+S+
Sbjct: 102 LVVEPRTRISRGFAFVTMESAEDAERCIKYLNQSVLEGRYITIERSR 148
>gi|149491652|ref|XP_001512914.1| PREDICTED: RNA-binding protein 4B-like isoform 1 [Ornithorhynchus
anatinus]
Length = 365
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|88601667|ref|YP_501845.1| RNA recognition motif-containing protein [Methanospirillum
hungatei JF-1]
gi|88187129|gb|ABD40126.1| RNA-binding region RNP-1 (RNA recognition motif)
[Methanospirillum hungatei JF-1]
Length = 103
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 29/40 (72%)
Query: 29 DSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++ GFGF+ + E+A AA+ L++TE++GR + +++++
Sbjct: 37 ENKGFGFVEMGTSEEAQAALDALNDTEFDGRTMRIDEARP 76
>gi|541310|pir||S41505 12RNP2 protein - Synechococcus sp. (PCC 6301)
gi|961511|dbj|BAA09863.1| 12kDa RNA-binding, 12RNP2 [Synechococcus elongatus PCC 7942]
Length = 100
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ ++ D DAAI LD EW GR + V K++
Sbjct: 43 GFAFIEMEEDAHEDAAISELDGAEWFGRQLRVSKARP 79
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
>gi|406996166|gb|EKE14624.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 84
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 32/48 (66%)
Query: 22 LSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
+ + ++ S GFGF+ ++ E+A AI L+++E+ GR I V++ K++
Sbjct: 34 IVRFFDKKSKGFGFVEMETVEEAKTAIEKLNDSEFRGRKIIVDEFKAS 81
>gi|55926188|ref|NP_001007015.2| RNA-binding protein 4B [Rattus norvegicus]
gi|62510948|sp|Q64LC9.2|RBM4B_RAT RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30;
AltName: Full=Zinc-responsive protein ZD7
gi|55562771|gb|AAH86416.1| RNA binding motif protein 4B [Rattus norvegicus]
gi|149061999|gb|EDM12422.1| rCG48244, isoform CRA_a [Rattus norvegicus]
gi|149062000|gb|EDM12423.1| rCG48244, isoform CRA_a [Rattus norvegicus]
Length = 357
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|27754120|ref|NP_079993.2| RNA-binding protein 4B [Mus musculus]
gi|62511125|sp|Q8VE92.1|RBM4B_MOUSE RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|18044496|gb|AAH19488.1| RNA binding motif protein 4B [Mus musculus]
gi|148701119|gb|EDL33066.1| mCG8380, isoform CRA_a [Mus musculus]
gi|148701120|gb|EDL33067.1| mCG8380, isoform CRA_a [Mus musculus]
Length = 357
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S ++ EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|282165770|ref|NP_001163955.1| RNA binding motif protein 4 [Rattus norvegicus]
gi|149061994|gb|EDM12417.1| rCG48334, isoform CRA_b [Rattus norvegicus]
Length = 365
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|82802757|gb|ABB92429.1| PABP3 [Hylobates lar]
Length = 635
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S ++ EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|220905698|ref|YP_002481009.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7425]
gi|219862309|gb|ACL42648.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7425]
Length = 90
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ L D D+AI LD EW GR + V K+K
Sbjct: 43 GFAFVELAEDAQEDSAISELDGAEWMGRQLRVNKAKP 79
>gi|147791022|emb|CAN63579.1| hypothetical protein VITISV_029585 [Vitis vinifera]
Length = 241
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 21 LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
L++ R+S GFGF+++ E+A+ I+ LD + GR+I VEK+
Sbjct: 80 LVTDPWTRESRGFGFVTMSTVEEANRCIKYLDRSVLEGRVITVEKA 125
>gi|428298449|ref|YP_007136755.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 6303]
gi|428234993|gb|AFZ00783.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 6303]
Length = 95
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ ++ D D+AI LD EW GR + V K+K
Sbjct: 42 RGFAFVDMNEDAQEDSAIAELDGAEWMGRQLRVNKAKP 79
>gi|434389333|ref|YP_007099944.1| RRM domain-containing RNA-binding protein [Chamaesiphon minutus
PCC 6605]
gi|428020323|gb|AFY96417.1| RRM domain-containing RNA-binding protein [Chamaesiphon minutus
PCC 6605]
Length = 93
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ ++ D + AAI LD EW GR + V K+K
Sbjct: 43 GFAFVEMETDAEESAAIEALDGAEWMGRDLKVNKAKP 79
>gi|403167505|ref|XP_003889826.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375167060|gb|EHS63323.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 205
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 35/57 (61%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
SK ++ + L+ ++ GFGF++++ E+ADAA+ L+ + G+ + VEK++
Sbjct: 44 SKYGRVQKAQLMRDPNTKEVRGFGFVTMETCEEADAAMTALNGADLFGKPLGVEKAR 100
>gi|357421081|ref|YP_004928530.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Mastotermes
darwiniensis) str. MADAR]
gi|354803591|gb|AER40705.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Mastotermes
darwiniensis) str. MADAR]
Length = 89
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
N+ S GFGF+ + +E+A AI L+ TE+ GR I V
Sbjct: 43 NKRSKGFGFIEMSNEENAKKAIEKLNGTEFMGRNIIV 79
>gi|242079017|ref|XP_002444277.1| hypothetical protein SORBIDRAFT_07g019390 [Sorghum bicolor]
gi|241940627|gb|EES13772.1| hypothetical protein SORBIDRAFT_07g019390 [Sorghum bicolor]
Length = 191
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 28 RDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65
++S GF F+++D EDA I+ L T GR++ VEK
Sbjct: 124 KESRGFAFVTMDTLEDARRCIKYLHRTVLEGRLVTVEK 161
>gi|13899354|ref|NP_113680.1| RNA-binding protein 4B [Homo sapiens]
gi|109105261|ref|XP_001109453.1| PREDICTED: RNA-binding protein 4B-like [Macaca mulatta]
gi|114638751|ref|XP_508578.2| PREDICTED: RNA-binding protein 4B isoform 2 [Pan troglodytes]
gi|297688065|ref|XP_002821512.1| PREDICTED: RNA-binding protein 4B [Pongo abelii]
gi|397517079|ref|XP_003828747.1| PREDICTED: RNA-binding protein 4B [Pan paniscus]
gi|402892714|ref|XP_003909554.1| PREDICTED: RNA-binding protein 4B [Papio anubis]
gi|426369353|ref|XP_004051657.1| PREDICTED: RNA-binding protein 4B isoform 1 [Gorilla gorilla
gorilla]
gi|62511129|sp|Q9BQ04.1|RBM4B_HUMAN RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|13097558|gb|AAH03503.1| RNA binding motif protein 4B [Homo sapiens]
gi|13436323|gb|AAH04951.1| RNA binding motif protein 4B [Homo sapiens]
gi|119594964|gb|EAW74558.1| RNA binding motif protein 4B [Homo sapiens]
gi|193787792|dbj|BAG52995.1| unnamed protein product [Homo sapiens]
gi|208967358|dbj|BAG73693.1| RNA binding motif protein 4B [synthetic construct]
gi|325464201|gb|ADZ15871.1| RNA binding motif protein 4B [synthetic construct]
gi|355566265|gb|EHH22644.1| RNA-binding motif protein 4B [Macaca mulatta]
gi|355751922|gb|EHH56042.1| RNA-binding motif protein 4B [Macaca fascicularis]
Length = 359
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|403301169|ref|XP_003941271.1| PREDICTED: RNA-binding protein 4B [Saimiri boliviensis boliviensis]
Length = 359
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 27/38 (71%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF++ + E+A A+ TL ++E++GR + V +++
Sbjct: 268 SRGFGFVNFETHEEAQKAVETLHDSEYHGRKLFVSRAQ 305
>gi|357120144|ref|XP_003561789.1| PREDICTED: uncharacterized protein LOC100835076 [Brachypodium
distachyon]
Length = 356
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+++ S++ R+S GFGF+++ ++AD I+ LD + GR+I VEK+K
Sbjct: 75 EVIDASIVLDPWTRESRGFGFVTMATLKEADRCIKYLDRSVLEGRVITVEKAK 127
>gi|348565071|ref|XP_003468327.1| PREDICTED: RNA-binding protein 4B-like [Cavia porcellus]
Length = 358
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|344295811|ref|XP_003419604.1| PREDICTED: RNA-binding protein 4B-like [Loxodonta africana]
Length = 359
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|332249630|ref|XP_003273961.1| PREDICTED: RNA-binding protein 4B isoform 1 [Nomascus leucogenys]
Length = 359
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|34495359|gb|AAQ73500.1| zinc responsive protein ZD7 [Rattus norvegicus]
Length = 357
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|126723790|ref|NP_001075548.1| RNA-binding protein 4 [Oryctolagus cuniculus]
gi|62511088|sp|Q9BDY9.1|RBM4_RABIT RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
AltName: Full=RNA-binding motif protein 4
gi|13182931|gb|AAK14991.1|AF233063_1 RNA-binding protein lark [Oryctolagus cuniculus]
Length = 359
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|380817026|gb|AFE80387.1| RNA-binding protein 4B [Macaca mulatta]
gi|384949730|gb|AFI38470.1| RNA-binding protein 4B [Macaca mulatta]
gi|410254450|gb|JAA15192.1| RNA binding motif protein 4B [Pan troglodytes]
gi|410295008|gb|JAA26104.1| RNA binding motif protein 4B [Pan troglodytes]
gi|410352743|gb|JAA42975.1| RNA binding motif protein 4B [Pan troglodytes]
Length = 359
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|344345229|ref|ZP_08776084.1| RNP-1 like RNA-binding protein [Marichromatium purpuratum 984]
gi|343803180|gb|EGV21091.1| RNP-1 like RNA-binding protein [Marichromatium purpuratum 984]
Length = 90
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
RD S +L ++ + S GFGF+ + + +AD AI+ L+E++ GR + V ++
Sbjct: 18 RDIFSGFGELASAEVIKDKFSGQSKGFGFVDMPNNSEADTAIKALNESDMKGRKLTVNEA 77
Query: 67 KS 68
+
Sbjct: 78 RP 79
>gi|301784857|ref|XP_002927839.1| PREDICTED: RNA-binding protein 4B-like [Ailuropoda melanoleuca]
gi|281346283|gb|EFB21867.1| hypothetical protein PANDA_017683 [Ailuropoda melanoleuca]
Length = 359
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|255949670|ref|XP_002565602.1| Pc22g16890 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592619|emb|CAP98977.1| Pc22g16890 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 724
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 38/58 (65%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S++Y + ++ + S GFGF++ EDA++A++ L+ ++++G++I V+ ++S
Sbjct: 57 SQSYIIKHAVVVCDKETKASKGFGFVTFADVEDAESALKELNGSKFDGKVIRVDYAES 114
>gi|444720785|gb|ELW61557.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 232
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 17 LRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LR+ +++ + S GFGF+S +R EDA A+ ++ E NG+ I++ +++
Sbjct: 173 LRVKVMTDESGK-SKGFGFVSFERHEDAQKAVNEMNGKELNGKQIYIGRAQ 222
>gi|443897423|dbj|GAC74764.1| hsp27-ere-tata-binding protein/Scaffold attachment factor
[Pseudozyma antarctica T-34]
Length = 285
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
R ++ R+ GF F++ ++ EDA+AAI ++ +++ GR I V+K++
Sbjct: 102 RAQVMYDPHTREPRGFAFVTYEKAEDAEAAITAMNGSDFQGRKITVDKAR 151
>gi|108707341|gb|ABF95136.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 347
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+++ S++ R+S GFGF+++ ++AD I+ LD + GR+I VEK+K
Sbjct: 68 EVIDASIVLDPWTRESRGFGFVTMATVKEADLCIKYLDRSVLEGRVITVEKAK 120
>gi|108707340|gb|ABF95135.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 346
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+++ S++ R+S GFGF+++ ++AD I+ LD + GR+I VEK+K
Sbjct: 67 EVIDASIVLDPWTRESRGFGFVTMATVKEADLCIKYLDRSVLEGRVITVEKAK 119
>gi|427709160|ref|YP_007051537.1| RNP-1 like RNA-binding protein [Nostoc sp. PCC 7107]
gi|427361665|gb|AFY44387.1| RNP-1 like RNA-binding protein [Nostoc sp. PCC 7107]
Length = 99
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D + +AI LD EW GR + V K+K
Sbjct: 43 GFGFVEMGTDAEETSAIEALDGAEWMGRDLKVNKAKP 79
>gi|427718424|ref|YP_007066418.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
gi|427350860|gb|AFY33584.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
Length = 101
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
R+ L + GF F+ ++ D AAI LD EW GR + V K+K
Sbjct: 29 RVQLPTDRETGRPRGFAFVEMETDAQETAAIEALDGAEWMGRDLKVNKAKP 79
>gi|427708129|ref|YP_007050506.1| RNP-1 like RNA-binding protein [Nostoc sp. PCC 7107]
gi|427360634|gb|AFY43356.1| RNP-1 like RNA-binding protein [Nostoc sp. PCC 7107]
Length = 99
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ ++ D +AAI LD EW GR + V K+K
Sbjct: 42 RGFAFVEMEEDAQENAAITELDGAEWMGRQLRVNKAKP 79
>gi|354496140|ref|XP_003510185.1| PREDICTED: RNA-binding protein 4 [Cricetulus griseus]
gi|344250268|gb|EGW06372.1| RNA-binding protein 4 [Cricetulus griseus]
Length = 360
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA+ A+ ++ + NG+I+ V +++
Sbjct: 236 SKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQ 273
>gi|125543223|gb|EAY89362.1| hypothetical protein OsI_10866 [Oryza sativa Indica Group]
Length = 324
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+++ S++ R+S GFGF+++ ++AD I+ LD + GR+I VEK+K
Sbjct: 45 EVIDASIVLDPWTRESRGFGFVTMATVKEADLCIKYLDRSVLEGRVITVEKAK 97
>gi|120577684|gb|AAI30257.1| RNA binding motif protein 4 [Mus musculus]
Length = 361
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|323305308|gb|EGA59055.1| Pab1p [Saccharomyces cerevisiae FostersB]
gi|323333819|gb|EGA75210.1| Pab1p [Saccharomyces cerevisiae AWRI796]
Length = 466
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 21 LLSKSLNRDS----HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
++S SL +D+ GFGF++ ++ EDA A+ L+++E NG ++V +++
Sbjct: 134 IVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQ 184
>gi|396471623|ref|XP_003838913.1| hypothetical protein LEMA_P025860.1 [Leptosphaeria maculans JN3]
gi|312215482|emb|CBX95434.1| hypothetical protein LEMA_P025860.1 [Leptosphaeria maculans JN3]
Length = 164
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ D +ADAA++ L+ E++GR I V+K+
Sbjct: 42 SRGFGFVRYANDAEADAAMQALNNEEFDGRRIRVDKA 78
>gi|223039621|ref|ZP_03609908.1| RNA-binding region RNP-1 [Campylobacter rectus RM3267]
gi|222879192|gb|EEF14286.1| RNA-binding region RNP-1 [Campylobacter rectus RM3267]
Length = 81
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ ++ D DA AI L+ E GR + V +SK
Sbjct: 41 SKGFGFVEMENDADALKAIEALNNKEVGGRALRVNESKP 79
>gi|57099639|ref|XP_533216.1| PREDICTED: RNA-binding protein 4B isoform 1 [Canis lupus
familiaris]
Length = 359
Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|410222930|gb|JAA08684.1| RNA binding motif protein 4B [Pan troglodytes]
Length = 359
Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|255579604|ref|XP_002530643.1| Arginine/serine-rich-splicing factor, putative [Ricinus communis]
gi|223529816|gb|EEF31751.1| Arginine/serine-rich-splicing factor, putative [Ricinus communis]
Length = 248
Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 21 LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
L+ + R S GF F+++D EDA+ ++ L+++ GR I VEKS+
Sbjct: 105 LVVEPRTRISRGFAFVTMDNVEDANRCVKYLNQSVLEGRYITVEKSR 151
>gi|374384996|ref|ZP_09642507.1| hypothetical protein HMPREF9449_00893 [Odoribacter laneus YIT
12061]
gi|373227054|gb|EHP49375.1| hypothetical protein HMPREF9449_00893 [Odoribacter laneus YIT
12061]
Length = 100
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + D + AI L++ E++G++I+V +K
Sbjct: 41 SRGFGFVEMPSDTEGQKAIDELNQVEYDGKVINVNVAKP 79
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA+ A+ ++ + NG+I+ V +++
Sbjct: 230 SKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQ 267
>gi|53714011|ref|YP_100003.1| RNA-binding protein [Bacteroides fragilis YCH46]
gi|60682207|ref|YP_212351.1| RNA-binding protein [Bacteroides fragilis NCTC 9343]
gi|265764361|ref|ZP_06092929.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|336410386|ref|ZP_08590866.1| hypothetical protein HMPREF1018_02883 [Bacteroides sp. 2_1_56FAA]
gi|375359004|ref|YP_005111776.1| putative RNA-binding protein [Bacteroides fragilis 638R]
gi|423250510|ref|ZP_17231526.1| hypothetical protein HMPREF1066_02536 [Bacteroides fragilis
CL03T00C08]
gi|423256011|ref|ZP_17236940.1| hypothetical protein HMPREF1067_03584 [Bacteroides fragilis
CL03T12C07]
gi|423271876|ref|ZP_17250846.1| hypothetical protein HMPREF1079_03928 [Bacteroides fragilis
CL05T00C42]
gi|423276340|ref|ZP_17255281.1| hypothetical protein HMPREF1080_03934 [Bacteroides fragilis
CL05T12C13]
gi|423283895|ref|ZP_17262779.1| hypothetical protein HMPREF1204_02317 [Bacteroides fragilis HMW
615]
gi|52216876|dbj|BAD49469.1| putative RNA-binding protein [Bacteroides fragilis YCH46]
gi|60493641|emb|CAH08430.1| putative RNA-binding protein [Bacteroides fragilis NCTC 9343]
gi|263256969|gb|EEZ28315.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|301163685|emb|CBW23239.1| putative RNA-binding protein [Bacteroides fragilis 638R]
gi|335945442|gb|EGN07255.1| hypothetical protein HMPREF1018_02883 [Bacteroides sp. 2_1_56FAA]
gi|392650093|gb|EIY43765.1| hypothetical protein HMPREF1067_03584 [Bacteroides fragilis
CL03T12C07]
gi|392652819|gb|EIY46477.1| hypothetical protein HMPREF1066_02536 [Bacteroides fragilis
CL03T00C08]
gi|392696732|gb|EIY89924.1| hypothetical protein HMPREF1079_03928 [Bacteroides fragilis
CL05T00C42]
gi|392697381|gb|EIY90566.1| hypothetical protein HMPREF1080_03934 [Bacteroides fragilis
CL05T12C13]
gi|404580441|gb|EKA85150.1| hypothetical protein HMPREF1204_02317 [Bacteroides fragilis HMW
615]
Length = 122
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S GFGF+ + DE+ +AAI L+E E +G+ + V
Sbjct: 41 SKGFGFVEMPNDEEGNAAIAALNEKEIDGKTLAV 74
>gi|383422057|gb|AFH34242.1| RNA-binding protein 4B [Macaca mulatta]
Length = 359
Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|357040166|ref|ZP_09101955.1| RNP-1 like RNA-binding protein [Desulfotomaculum gibsoniae DSM
7213]
gi|355356830|gb|EHG04611.1| RNP-1 like RNA-binding protein [Desulfotomaculum gibsoniae DSM
7213]
Length = 82
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S+ ++L +++ S GFGF+ + +DEDA+ I L+ T++ GRII V ++++
Sbjct: 24 SRCGEVLGSRIITDRETGRSRGFGFVEV-KDEDAEGMIAALNGTDFEGRIITVNEARA 80
>gi|330920718|ref|XP_003299119.1| hypothetical protein PTT_10054 [Pyrenophora teres f. teres 0-1]
gi|311327336|gb|EFQ92795.1| hypothetical protein PTT_10054 [Pyrenophora teres f. teres 0-1]
Length = 171
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ +D +ADAA++ ++ E++GR I V+K+
Sbjct: 42 SRGFGFVRYAQDTEADAAMQAMNNEEFDGRRIRVDKA 78
>gi|189203945|ref|XP_001938308.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985407|gb|EDU50895.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 168
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ +D +ADAA++ ++ E++GR I V+K+
Sbjct: 42 SRGFGFVRYAQDTEADAAMQAMNNEEFDGRRIRVDKA 78
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
SK + L + +++ S + S GFGF+S ++ EDA+ A+ ++ + NG+++ V +++
Sbjct: 212 SKYGKTLSVKVMTDSSGK-SKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQ 267
>gi|374316448|ref|YP_005062876.1| RRM domain-containing RNA-binding protein [Sphaerochaeta
pleomorpha str. Grapes]
gi|359352092|gb|AEV29866.1| RRM domain-containing RNA-binding protein [Sphaerochaeta
pleomorpha str. Grapes]
Length = 92
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
RD S+ +L S++ R GFGF+ ++ D ADAAI LD + GR + V ++
Sbjct: 20 RDLFSQYGTVLSASIIIDRETRRPKGFGFVEMEEDSAADAAISQLDGKDLGGRNLRVNEA 79
>gi|302683360|ref|XP_003031361.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
gi|300105053|gb|EFI96458.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
Length = 624
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 35/56 (62%)
Query: 12 KTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
K Y ++ SLL + + GFGF++ + E+A A+ L E++++GR ++V +++
Sbjct: 244 KQYGQVQSSLLKRDDQGRNLGFGFVNFETHEEAQKAVDALHESDFHGRKLYVARAQ 299
>gi|86262144|ref|NP_033058.2| RNA-binding protein 4 [Mus musculus]
gi|62511057|sp|Q8C7Q4.1|RBM4_MOUSE RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
Short=mLark; AltName: Full=RNA-binding motif protein 4;
AltName: Full=RNA-binding motif protein 4a
gi|26340398|dbj|BAC33862.1| unnamed protein product [Mus musculus]
gi|148701113|gb|EDL33060.1| mCG8382, isoform CRA_a [Mus musculus]
gi|219520483|gb|AAI44950.1| RNA binding motif protein 4 [Mus musculus]
Length = 361
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|452840079|gb|EME42017.1| hypothetical protein DOTSEDRAFT_72945 [Dothistroma septosporum
NZE10]
Length = 339
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
GFGFL + A +AIR L+E E NGR + V+ S
Sbjct: 51 GFGFLEYSDTDSAQSAIRNLNEYELNGRTLRVDFS 85
>gi|443318092|ref|ZP_21047374.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
6406]
gi|442782317|gb|ELR92375.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
6406]
Length = 108
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ + D + +AAI LD EW GR + V K++
Sbjct: 43 GFAFVEMSEDAEENAAIEDLDGAEWMGRTLKVNKARP 79
>gi|29893585|gb|AAP06839.1| putative transformer serine/arginine-rich ribonucleoprotein
[Oryza sativa Japonica Group]
gi|125585702|gb|EAZ26366.1| hypothetical protein OsJ_10248 [Oryza sativa Japonica Group]
Length = 324
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+++ S++ R+S GFGF+++ ++AD I+ LD + GR+I VEK+K
Sbjct: 45 EVIDASIVLDPWTRESRGFGFVTMATVKEADLCIKYLDRSVLEGRVITVEKAK 97
>gi|388858327|emb|CCF48115.1| related to glycine-rich RNA-binding protein [Ustilago hordei]
Length = 193
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF++ +ADAAI L+E E +GR I V + S
Sbjct: 43 SRGFGFVTFATQGEADAAIAALNEQELDGRRIRVNMANS 81
>gi|308459677|ref|XP_003092154.1| hypothetical protein CRE_20061 [Caenorhabditis remanei]
gi|308254084|gb|EFO98036.1| hypothetical protein CRE_20061 [Caenorhabditis remanei]
Length = 336
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 24 KSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
KS +RDS F F+ D DA A+R D E++G+ + VE
Sbjct: 36 KSRSRDSPAFAFIQFDDRRDAKEAVRACDGYEFDGKRLRVE 76
>gi|409045875|gb|EKM55355.1| hypothetical protein PHACADRAFT_255926 [Phanerochaete carnosa
HHB-10118-sp]
Length = 672
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 29 DSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+S GFGF++ + E+A A+ L +TE+NGR + V +++
Sbjct: 268 NSKGFGFVNFEFHEEAQNAVDGLHDTEYNGRKLFVSRAQ 306
>gi|395851691|ref|XP_003798386.1| PREDICTED: RNA-binding protein 4 [Otolemur garnettii]
Length = 365
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|403165616|ref|XP_003325592.2| hypothetical protein PGTG_07425 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165799|gb|EFP81173.2| hypothetical protein PGTG_07425 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 759
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 28 RDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
R G G++S R DA A R LD++++ GR++H+
Sbjct: 273 RKPKGLGYVSYSRSSDALEAYRKLDQSDFQGRLLHI 308
>gi|430744757|ref|YP_007203886.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430016477|gb|AGA28191.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 114
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 21 LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++ + NR S GFGF+ +D D A AAI+ L++ + +GR + V ++K
Sbjct: 35 IIDRDTNR-SKGFGFVEMDTDAQAQAAIQGLNDRDHDGRNLTVNEAKP 81
>gi|224107511|ref|XP_002314506.1| predicted protein [Populus trichocarpa]
gi|222863546|gb|EEF00677.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GF F+++ ED +A I LDE+++ GRI+ V S
Sbjct: 147 SRGFAFVTMSSIEDCNAVIENLDESQYMGRILRVNFS 183
>gi|113478077|ref|YP_724138.1| RNA-binding region RNP-1 [Trichodesmium erythraeum IMS101]
gi|110169125|gb|ABG53665.1| RNA-binding region RNP-1 [Trichodesmium erythraeum IMS101]
Length = 102
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
R+ L + GFGF+ + + + AI LD EW GR I V K+K
Sbjct: 29 RVQLPTDRETGRPRGFGFVEMSSENEEQKAIEALDGAEWMGRDIKVNKAKP 79
>gi|443312655|ref|ZP_21042271.1| RRM domain-containing RNA-binding protein [Synechocystis sp. PCC
7509]
gi|442777374|gb|ELR87651.1| RRM domain-containing RNA-binding protein [Synechocystis sp. PCC
7509]
Length = 96
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ ++ D D AI LD EW GR + V K+K
Sbjct: 42 RGFAFVDMNEDAQEDTAITELDGAEWMGRQLRVNKAKP 79
>gi|428181978|gb|EKX50840.1| hypothetical protein GUITHDRAFT_85230, partial [Guillardia theta
CCMP2712]
Length = 243
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 21 LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
L+ S GFGF + A++AIR L+ TE+NGR++ ++
Sbjct: 43 LVKNSDTGQPKGFGFCEFRDAQTAESAIRNLNNTEFNGRLLRID 86
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 21 LLSKSLNRDS----HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
++S SL +D+ GFGF++ ++ EDA A+ L+++E NG ++V +++
Sbjct: 245 IVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQ 295
>gi|307194386|gb|EFN76709.1| Scaffold attachment factor B2 [Harpegnathos saltator]
Length = 911
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
SK +++ +++ + + +G++++ EDA I+ L TE +GR+I VEK+K
Sbjct: 345 SKYGKVIGAKVVTNARTPGARCYGYVTMSTSEDATKCIQHLHRTELHGRVISVEKAK 401
>gi|443895166|dbj|GAC72512.1| hypothetical protein PANT_7d00134 [Pseudozyma antarctica T-34]
Length = 301
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF++ +ADAAI L+E E +GR I V + S
Sbjct: 43 SRGFGFVTFATQGEADAAIAALNEQELDGRRIRVNMANS 81
>gi|428221393|ref|YP_007105563.1| RRM domain-containing RNA-binding protein [Synechococcus sp. PCC
7502]
gi|427994733|gb|AFY73428.1| RRM domain-containing RNA-binding protein [Synechococcus sp. PCC
7502]
Length = 96
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ ++ D AAI LD EW GR + V K+K
Sbjct: 43 GFAFVDMEEDSQETAAIEALDGAEWMGRDLKVNKAKP 79
>gi|313147463|ref|ZP_07809656.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|423277773|ref|ZP_17256687.1| hypothetical protein HMPREF1203_00904 [Bacteroides fragilis HMW
610]
gi|424663907|ref|ZP_18100944.1| hypothetical protein HMPREF1205_04293 [Bacteroides fragilis HMW
616]
gi|313136230|gb|EFR53590.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|404577597|gb|EKA82335.1| hypothetical protein HMPREF1205_04293 [Bacteroides fragilis HMW
616]
gi|404586970|gb|EKA91529.1| hypothetical protein HMPREF1203_00904 [Bacteroides fragilis HMW
610]
Length = 122
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + DE+ +AAI L+E E +G+ + V ++
Sbjct: 41 SKGFGFVEMPNDEEGNAAIAALNEKEIDGKTLSVSVARP 79
>gi|116004239|ref|NP_001070478.1| RNA-binding protein 4 [Bos taurus]
gi|91207336|sp|Q3MHX3.1|RBM4_BOVIN RecName: Full=RNA-binding protein 4; AltName: Full=RNA-binding
motif protein 4; AltName: Full=RNA-binding motif protein
4a
gi|75775098|gb|AAI04571.1| RNA binding motif protein 4 [Bos taurus]
gi|146231708|gb|ABQ12929.1| RNA binding motif protein 4 [Bos taurus]
gi|296471486|tpg|DAA13601.1| TPA: RNA-binding protein 4 [Bos taurus]
gi|440899389|gb|ELR50692.1| RNA-binding protein 4 [Bos grunniens mutus]
Length = 362
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|406907930|gb|EKD48603.1| RNA-binding protein [uncultured bacterium]
Length = 100
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GF F+ + DE+ +AAI L+ E +GR I V K+K
Sbjct: 41 SKGFAFVDMSNDEEGEAAIEKLNGHELDGRTIVVNKAKP 79
>gi|402086968|gb|EJT81866.1| hypothetical protein GGTG_01840 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 192
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
S GFGF+ ++DA AI ++ E++GR I V+K+ T
Sbjct: 42 SRGFGFVRYTNEDDAQRAISAMNNVEFDGRTIRVDKASDT 81
>gi|349581770|dbj|GAA26927.1| K7_Nop4p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 685
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 33/55 (60%)
Query: 13 TYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+ ++ +++ K N+ S GFGF+S ++D A+ +T++NG I+ V+ +K
Sbjct: 48 NFAPIKHAVVVKDTNKRSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIAK 102
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 275 SKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQ 312
>gi|149725614|ref|XP_001496788.1| PREDICTED: RNA-binding protein 4 isoform 1 [Equus caballus]
gi|338712238|ref|XP_003362679.1| PREDICTED: RNA-binding protein 4 isoform 2 [Equus caballus]
Length = 361
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|116073022|ref|ZP_01470284.1| RNA-binding protein RbpD [Synechococcus sp. RS9916]
gi|116068327|gb|EAU74079.1| RNA-binding protein RbpD [Synechococcus sp. RS9916]
Length = 107
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
GFGF+ + D D AI L EW GR+I V K+
Sbjct: 42 RGFGFVEMSSDADEQKAIDDLQNVEWMGRMIRVNKA 77
>gi|431910217|gb|ELK13290.1| RNA-binding protein 4 [Pteropus alecto]
Length = 365
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|73982920|ref|XP_852303.1| PREDICTED: RNA-binding protein 4 isoform 1 [Canis lupus familiaris]
gi|301784859|ref|XP_002927840.1| PREDICTED: RNA-binding protein 4-like isoform 1 [Ailuropoda
melanoleuca]
gi|301784861|ref|XP_002927841.1| PREDICTED: RNA-binding protein 4-like isoform 2 [Ailuropoda
melanoleuca]
gi|410974610|ref|XP_003993736.1| PREDICTED: RNA-binding protein 4 [Felis catus]
gi|281346284|gb|EFB21868.1| hypothetical protein PANDA_017684 [Ailuropoda melanoleuca]
Length = 365
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|348565067|ref|XP_003468325.1| PREDICTED: RNA-binding protein 4-like [Cavia porcellus]
Length = 365
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|158259071|dbj|BAF85494.1| unnamed protein product [Homo sapiens]
Length = 364
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|521090|emb|CAA53824.1| NOP77p [Saccharomyces cerevisiae]
gi|151942750|gb|EDN61096.1| nucleolar protein [Saccharomyces cerevisiae YJM789]
gi|256270510|gb|EEU05694.1| Nop4p [Saccharomyces cerevisiae JAY291]
gi|323335081|gb|EGA76371.1| Nop4p [Saccharomyces cerevisiae Vin13]
Length = 685
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 33/55 (60%)
Query: 13 TYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+ ++ +++ K N+ S GFGF+S ++D A+ +T++NG I+ V+ +K
Sbjct: 48 NFAPIKHAVVVKDTNKRSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIAK 102
>gi|6325213|ref|NP_015282.1| Nop4p [Saccharomyces cerevisiae S288c]
gi|585573|sp|P37838.1|NOP4_YEAST RecName: Full=Nucleolar protein 4; AltName: Full=Nucleolar protein
NOP77
gi|420394|gb|AAA20590.1| Nop4p [Saccharomyces cerevisiae]
gi|1171415|gb|AAB68177.1| Nop4p: RNA recognition motif-containing protein [Saccharomyces
cerevisiae]
gi|285815494|tpg|DAA11386.1| TPA: Nop4p [Saccharomyces cerevisiae S288c]
gi|392295968|gb|EIW07071.1| Nop4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 685
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 33/55 (60%)
Query: 13 TYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+ ++ +++ K N+ S GFGF+S ++D A+ +T++NG I+ V+ +K
Sbjct: 48 NFAPIKHAVVVKDTNKRSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIAK 102
>gi|409080475|gb|EKM80835.1| hypothetical protein AGABI1DRAFT_112564 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426197375|gb|EKV47302.1| hypothetical protein AGABI2DRAFT_192533 [Agaricus bisporus var.
bisporus H97]
Length = 168
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF++ +ADAAI L+E E +GR I V + +
Sbjct: 67 SRGFGFVTFSNSGEADAAINGLNEQELDGRRIKVNMANA 105
>gi|239611503|gb|EEQ88490.1| glycine-rich RNA-binding protein [Ajellomyces dermatitidis ER-3]
gi|327348484|gb|EGE77341.1| glycine-rich RNA-binding protein [Ajellomyces dermatitidis ATCC
18188]
Length = 143
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ D +AD A+ ++ E++GR+I V+K+
Sbjct: 42 SRGFGFVRFASDTEADTAMNAMNNQEFDGRVIRVDKA 78
>gi|223938363|ref|ZP_03630257.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223892932|gb|EEF59399.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 127
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 26/39 (66%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF++++ E A AA++ L+ T++ GR + V +++
Sbjct: 43 PRGFGFVTMETQEGAQAAVQALNGTDFGGRPLTVNEARP 81
>gi|428225351|ref|YP_007109448.1| RNP-1 like RNA-binding protein [Geitlerinema sp. PCC 7407]
gi|427985252|gb|AFY66396.1| RNP-1 like RNA-binding protein [Geitlerinema sp. PCC 7407]
Length = 108
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D + AAI LD EW GR + V K+K
Sbjct: 42 RGFGFVEMSSDAEELAAIDALDGAEWMGRDLKVNKAKP 79
>gi|296218877|ref|XP_002755613.1| PREDICTED: RNA-binding protein 4 [Callithrix jacchus]
gi|403301167|ref|XP_003941270.1| PREDICTED: RNA-binding protein 4 [Saimiri boliviensis boliviensis]
Length = 364
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|291385477|ref|XP_002709280.1| PREDICTED: RNA binding motif protein 4B-like [Oryctolagus
cuniculus]
Length = 365
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|156096599|ref|XP_001614333.1| RNA binding protein [Plasmodium vivax Sal-1]
gi|148803207|gb|EDL44606.1| RNA binding protein, putative [Plasmodium vivax]
Length = 322
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 33/52 (63%)
Query: 16 LLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+ + ++S + R+S FGF++ + +DA+ A+ ++ + GRII+VE +K
Sbjct: 116 IEKCYVISNPITRESRNFGFVTFNNPDDANNAMIKANKMDIEGRIINVEIAK 167
>gi|93277122|ref|NP_002887.2| RNA-binding protein 4 isoform 1 [Homo sapiens]
gi|350539417|ref|NP_001233570.1| RNA-binding protein 4 [Pan troglodytes]
gi|332249626|ref|XP_003273959.1| PREDICTED: RNA-binding protein 4 isoform 2 [Nomascus leucogenys]
gi|397517069|ref|XP_003828742.1| PREDICTED: RNA-binding protein 4 isoform 1 [Pan paniscus]
gi|402892712|ref|XP_003909553.1| PREDICTED: RNA-binding protein 4 [Papio anubis]
gi|426369345|ref|XP_004051653.1| PREDICTED: RNA-binding protein 4 isoform 1 [Gorilla gorilla
gorilla]
gi|62511089|sp|Q9BWF3.1|RBM4_HUMAN RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
Short=hLark; AltName: Full=RNA-binding motif protein 4;
AltName: Full=RNA-binding motif protein 4a
gi|75077302|sp|Q4R979.1|RBM4_MACFA RecName: Full=RNA-binding protein 4; AltName: Full=RNA-binding
motif protein 4
gi|12653083|gb|AAH00307.1| RNA binding motif protein 4 [Homo sapiens]
gi|21618467|gb|AAH32735.1| RNA binding motif protein 4 [Homo sapiens]
gi|67967719|dbj|BAE00342.1| unnamed protein product [Macaca fascicularis]
gi|167774193|gb|ABZ92531.1| RNA binding motif protein 4 [synthetic construct]
gi|193783581|dbj|BAG53492.1| unnamed protein product [Homo sapiens]
gi|261859218|dbj|BAI46131.1| RNA binding motif protein 14 [synthetic construct]
gi|343958742|dbj|BAK63226.1| RNA binding motif protein 4 [Pan troglodytes]
gi|355566266|gb|EHH22645.1| RNA-binding motif protein 4 [Macaca mulatta]
gi|380784029|gb|AFE63890.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|383409025|gb|AFH27726.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|384942564|gb|AFI34887.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|410222926|gb|JAA08682.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410222932|gb|JAA08685.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410222940|gb|JAA08689.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254448|gb|JAA15191.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254452|gb|JAA15193.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410295006|gb|JAA26103.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352741|gb|JAA42974.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352747|gb|JAA42977.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352751|gb|JAA42979.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352753|gb|JAA42980.1| RNA binding motif protein 4 [Pan troglodytes]
Length = 364
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|423256816|ref|ZP_17237739.1| hypothetical protein HMPREF1055_00016 [Bacteroides fragilis
CL07T00C01]
gi|423266219|ref|ZP_17245222.1| hypothetical protein HMPREF1056_02909 [Bacteroides fragilis
CL07T12C05]
gi|387778292|gb|EIK40387.1| hypothetical protein HMPREF1055_00016 [Bacteroides fragilis
CL07T00C01]
gi|392701574|gb|EIY94732.1| hypothetical protein HMPREF1056_02909 [Bacteroides fragilis
CL07T12C05]
Length = 118
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + DE+ +AAI L+E E +G+ + V ++
Sbjct: 41 SKGFGFVEMPNDEEGNAAIAALNEKEIDGKTLAVSVARP 79
>gi|297608990|ref|NP_001062481.2| Os08g0557100 [Oryza sativa Japonica Group]
gi|255678651|dbj|BAF24395.2| Os08g0557100, partial [Oryza sativa Japonica Group]
Length = 194
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+++ E+AD AI L+ + NGR+++V ++
Sbjct: 56 SRGFGFVTMSTIEEADKAIEMLNRYDINGRLLNVNRAAP 94
>gi|255322500|ref|ZP_05363645.1| RNA-binding region RNP-1 [Campylobacter showae RM3277]
gi|255300408|gb|EET79680.1| RNA-binding region RNP-1 [Campylobacter showae RM3277]
Length = 81
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ ++ D DA AI L+ E GR + V +SK
Sbjct: 41 SKGFGFVEIENDADALKAIEALNNKEVGGRALRVNESKP 79
>gi|385808713|ref|YP_005845109.1| RRM domain RNA-binding protein [Ignavibacterium album JCM 16511]
gi|383800761|gb|AFH47841.1| RRM domain RNA-binding protein [Ignavibacterium album JCM 16511]
Length = 83
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ ++ DA +AI L+++E GR I V ++KS
Sbjct: 43 SRGFGFVEMENSADAKSAIEALNDSELKGRNIVVNEAKS 81
>gi|158333760|ref|YP_001514932.1| RNA-binding domain-containing protein [Acaryochloris marina
MBIC11017]
gi|359463897|ref|ZP_09252460.1| RNA-binding region [Acaryochloris sp. CCMEE 5410]
gi|158304001|gb|ABW25618.1| RNA-binding region [Acaryochloris marina MBIC11017]
Length = 95
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D + AI LD EW GR + V K+K
Sbjct: 43 GFGFVEMSDDAEETKAIEELDGAEWMGRTLKVNKAKP 79
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 8/55 (14%)
Query: 21 LLSKSLN----RD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
L SK+L+ RD S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 210 LFSKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 264
>gi|432091077|gb|ELK24289.1| RNA-binding protein 4 [Myotis davidii]
Length = 382
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|261205092|ref|XP_002627283.1| glycine-rich RNA-binding protein [Ajellomyces dermatitidis
SLH14081]
gi|239592342|gb|EEQ74923.1| glycine-rich RNA-binding protein [Ajellomyces dermatitidis
SLH14081]
Length = 143
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ D +AD A+ ++ E++GR+I V+K+
Sbjct: 42 SRGFGFVRFASDTEADTAMNAMNNQEFDGRVIRVDKA 78
>gi|350296775|gb|EGZ77752.1| RNA-binding domain-containing protein, partial [Neurospora
tetrasperma FGSC 2509]
Length = 175
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ D DA+ AI +D E++GR + V+K+
Sbjct: 48 SRGFGFVRYGNDADAENAIANMDGQEFDGRRVRVDKA 84
>gi|333999539|ref|YP_004532151.1| RNA-binding protein [Treponema primitia ZAS-2]
gi|333738431|gb|AEF83921.1| RNA-binding protein [Treponema primitia ZAS-2]
Length = 89
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 29 DSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+S GFGF+ + +E+A AAIR + T+ +GR I V ++
Sbjct: 42 NSKGFGFVEMSTEEEAQAAIRGTNSTDLDGRSIKVNEA 79
>gi|386394474|ref|ZP_10079255.1| RRM domain-containing RNA-binding protein [Desulfovibrio sp. U5L]
gi|385735352|gb|EIG55550.1| RRM domain-containing RNA-binding protein [Desulfovibrio sp. U5L]
Length = 108
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
RD + +++ ++L++ GFGF+ +D DE A+AAI+ LD E GR + V ++
Sbjct: 20 RDHFAPYGEVISVNLITDRETGRLRGFGFVEMD-DEGANAAIQALDGKELGGRTLKVNEA 78
Query: 67 K 67
+
Sbjct: 79 Q 79
>gi|357634909|ref|ZP_09132787.1| RNP-1 like RNA-binding protein [Desulfovibrio sp. FW1012B]
gi|357583463|gb|EHJ48796.1| RNP-1 like RNA-binding protein [Desulfovibrio sp. FW1012B]
Length = 107
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
RD + +++ ++L++ GFGF+ +D DE A+AAI+ LD E GR + V ++
Sbjct: 20 RDHFAPYGEVISVNLITDRETGRLRGFGFVEMD-DEGANAAIQALDGKELGGRTLKVNEA 78
Query: 67 K 67
+
Sbjct: 79 Q 79
>gi|255636876|gb|ACU18771.1| unknown [Glycine max]
Length = 246
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 7 RDRE---SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
RD E SK ++ L+ + R S GF F+++D EDA+ I+ L+++ GR I V
Sbjct: 83 RDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDTVEDANRCIKYLNQSVLEGRYITV 142
Query: 64 EKSK 67
E+S+
Sbjct: 143 ERSR 146
>gi|218198902|gb|EEC81329.1| hypothetical protein OsI_24503 [Oryza sativa Indica Group]
Length = 273
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+D SK ++ ++ + R S GF F+++D EDA+ I+ L+++ GR I VEKS
Sbjct: 82 KDYFSKEGRVTSCHVVLEPHTRVSRGFAFVTMDTVEDAERCIKYLNQSVMEGRNITVEKS 141
Query: 67 K 67
+
Sbjct: 142 R 142
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S GFGF+S +R EDA A+ ++ E NG+ I+V
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 28/41 (68%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S ++ EDA+ A+ ++ E +G++I V +++
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
>gi|405118918|gb|AFR93691.1| rRNA primary transcript binding protein [Cryptococcus neoformans
var. grubii H99]
Length = 752
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
G FL EDA AA R LD+T + GR++HV
Sbjct: 246 GTAFLQFHNPEDALAAYRALDKTTFQGRLLHV 277
>gi|299473131|emb|CBN78707.1| Peptidyl-prolyl cis-trans isomerase E [Ectocarpus siliculosus]
Length = 135
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 16 LLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++ ++L + GFGF+ + +EDA AAI +D E G+++ V +K
Sbjct: 35 IVEVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNMDGAELYGKVLRVNAAKP 87
>gi|119485430|ref|ZP_01619758.1| RNA-binding region protein [Lyngbya sp. PCC 8106]
gi|119457186|gb|EAW38312.1| RNA-binding region protein [Lyngbya sp. PCC 8106]
Length = 100
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ +D D AAI LD EW GR + V K++
Sbjct: 41 PRGFAFVEMDADTQEQAAIEKLDGAEWMGRDLKVNKARP 79
>gi|178056229|ref|NP_001116659.1| RNA-binding protein 4 [Sus scrofa]
gi|115394772|gb|ABI97180.1| RBM4 [Sus scrofa]
Length = 365
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 193 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 242
>gi|327301713|ref|XP_003235549.1| Nucleolar protein 4 [Trichophyton rubrum CBS 118892]
gi|326462901|gb|EGD88354.1| Nucleolar protein 4 [Trichophyton rubrum CBS 118892]
Length = 696
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
S++Y L +++ + S G+GF++ EDA +A R L+ + + G+ I +E
Sbjct: 68 SQSYPLKHATVVLDPQTKQSKGYGFVTFTDHEDAQSAARELNNSVFEGKKIKIE 121
>gi|224138144|ref|XP_002326529.1| predicted protein [Populus trichocarpa]
gi|222833851|gb|EEE72328.1| predicted protein [Populus trichocarpa]
Length = 294
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 24 KSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
K N S GF F+++ E+A AAI + E +GRII VE +K
Sbjct: 127 KQKNGRSRGFAFVTMTTGEEAQAAIDKFNSLEVSGRIIRVEFAK 170
>gi|158335180|ref|YP_001516352.1| RNA-binding protein [Acaryochloris marina MBIC11017]
gi|359460290|ref|ZP_09248853.1| RNA-binding protein [Acaryochloris sp. CCMEE 5410]
gi|158305421|gb|ABW27038.1| RNA-binding protein [Acaryochloris marina MBIC11017]
Length = 82
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ + D D + AI LD EW GR + V K+K
Sbjct: 43 GFAFVEMTEDNDEETAIADLDGAEWMGRQLKVNKAKP 79
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 21 LLSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+LS + RD S GFGF++ ++ EDA A+ ++ E +GR+++V +++
Sbjct: 217 ILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQ 267
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 28/41 (68%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S ++ EDA+ A+ ++ E +G++I V +++
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 21 LLSKSLNRDS----HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
++S SL +D+ GFGF++ ++ EDA A+ L+++E NG ++V +++
Sbjct: 245 IVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQ 295
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
>gi|158335765|ref|YP_001516937.1| RNA-binding protein [Acaryochloris marina MBIC11017]
gi|359461305|ref|ZP_09249868.1| RNA-binding protein [Acaryochloris sp. CCMEE 5410]
gi|158306006|gb|ABW27623.1| RNA-binding protein [Acaryochloris marina MBIC11017]
Length = 95
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + + + + AI LD EW GR + V K+K
Sbjct: 43 GFGFVEMQDESNEEKAIEELDGAEWMGRTLKVNKAKP 79
>gi|164427760|ref|XP_965121.2| hypothetical protein NCU02736 [Neurospora crassa OR74A]
gi|157071873|gb|EAA35885.2| predicted protein [Neurospora crassa OR74A]
Length = 200
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ D DA+ AI +D E++GR + V+K+
Sbjct: 42 SRGFGFVRYGNDADAENAIANMDGQEFDGRRVRVDKA 78
>gi|224059336|ref|XP_002299830.1| predicted protein [Populus trichocarpa]
gi|222847088|gb|EEE84635.1| predicted protein [Populus trichocarpa]
Length = 81
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 16 LLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGR 59
++ + L+ L R+S GFGF+++ E+AD I+ LD + GR
Sbjct: 38 VIDVHLVVDPLTRESRGFGFVTMSAVEEADRCIKYLDRSVLGGR 81
>gi|392396499|ref|YP_006433100.1| RRM domain-containing RNA-binding protein [Flexibacter litoralis
DSM 6794]
gi|390527577|gb|AFM03307.1| RRM domain-containing RNA-binding protein [Flexibacter litoralis
DSM 6794]
Length = 95
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 28 RDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
R S GFGF+ ++ +ED +AAI L+ E R I V+K+
Sbjct: 39 RRSRGFGFVEMESEEDGEAAIEELNGIELKDREIQVKKA 77
>gi|359496147|ref|XP_003635162.1| PREDICTED: uncharacterized RNA-binding protein C25G10.01-like
[Vitis vinifera]
Length = 228
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 4 KASRDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
+A D S+ ++ L+ + R S GF F++++ EDA+ I+ L+++ GR I V
Sbjct: 73 RALEDHFSREGKVASCFLVMEPRTRISRGFAFVTMETVEDANRCIKHLNQSVLEGRYITV 132
Query: 64 EKSK 67
EKS+
Sbjct: 133 EKSR 136
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>gi|119492303|ref|ZP_01623650.1| RNA-binding region protein [Lyngbya sp. PCC 8106]
gi|119453188|gb|EAW34355.1| RNA-binding region protein [Lyngbya sp. PCC 8106]
Length = 101
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 16 LLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ R+S+ + GF F+ + + DAAI LD EW GR + V K++
Sbjct: 27 VQRVSIPTDRETGRPRGFAFVEMQEESKEDAAIEALDGAEWMGRDLKVNKARP 79
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
>gi|398396524|ref|XP_003851720.1| hypothetical protein MYCGRDRAFT_73484 [Zymoseptoria tritici
IPO323]
gi|339471600|gb|EGP86696.1| hypothetical protein MYCGRDRAFT_73484 [Zymoseptoria tritici
IPO323]
Length = 321
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 12 KTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+T Q++ L+ + GFGFL + A +A+R L++ E NGR + V+ S
Sbjct: 31 RTGQVVGFRLVYDKETQQPKGFGFLEYTDADSAASAVRNLNDFELNGRTLRVDYS 85
>gi|118489861|gb|ABK96729.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 294
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 24 KSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
K N S GF F+++ E+A AAI + E +GRII VE +K
Sbjct: 127 KQKNGRSRGFAFVTMTTGEEAQAAIDKFNSLEVSGRIIRVEFAK 170
>gi|307185956|gb|EFN71758.1| Scaffold attachment factor B2 [Camponotus floridanus]
Length = 624
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+G++++ EDA I+ L TE +GR+I VEK+K
Sbjct: 78 YGYVTMSSSEDAAKCIQHLHRTELHGRVISVEKAK 112
>gi|336272443|ref|XP_003350978.1| hypothetical protein SMAC_04282 [Sordaria macrospora k-hell]
gi|380090745|emb|CCC04915.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 192
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ D DA+ AI +D E++GR + V+K+
Sbjct: 42 SRGFGFVRYANDADAENAIANMDGQEFDGRRVRVDKA 78
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
>gi|449515273|ref|XP_004164674.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 288
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 24 KSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
K N S GF F+++ ++A AAI+ D E +GR+I VE +K
Sbjct: 127 KQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAK 170
>gi|449462067|ref|XP_004148763.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic-like [Cucumis
sativus]
Length = 282
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 24 KSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
K N S GF F+++ ++A AAI+ D E +GR+I VE +K
Sbjct: 121 KQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAK 164
>gi|254424963|ref|ZP_05038681.1| RNA-binding protein, putative [Synechococcus sp. PCC 7335]
gi|196192452|gb|EDX87416.1| RNA-binding protein, putative [Synechococcus sp. PCC 7335]
Length = 92
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
R++L + GF F+ ++ D + AI LD EW GR + V K+K
Sbjct: 29 RITLPTDRETGRPRGFAFVEMEEDATEEKAIEALDGAEWMGRELRVNKAKP 79
>gi|359478878|ref|XP_002280779.2| PREDICTED: uncharacterized protein LOC100246735 [Vitis vinifera]
Length = 330
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 21 LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
L++ R+S GFGF+++ E+A+ I+ LD + GR+I VEK+
Sbjct: 80 LVTDPWTRESRGFGFVTMSTVEEANRCIKYLDRSVLEGRVITVEKA 125
>gi|328703269|ref|XP_001951731.2| PREDICTED: hypothetical protein LOC100164759 [Acyrthosiphon pisum]
Length = 911
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65
+GF++L EDA+ +I L +TE +GR+I VE+
Sbjct: 445 YGFVTLSSAEDANRSIENLHKTELHGRVISVER 477
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 21 LLSKSLNRDS----HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
++S SL +D+ GFGF++ ++ EDA A+ L+++E NG ++V +++
Sbjct: 245 IVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQ 295
>gi|268558666|ref|XP_002637324.1| C. briggsae CBR-SPN-4 protein [Caenorhabditis briggsae]
Length = 360
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
+R S GFGF++LD E + A L E+ GRII V ++ T
Sbjct: 88 DRGSKGFGFVTLDSIESCEKARAALHESHVQGRIIEVRRATPT 130
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 21 LLSKSLNRDS----HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
++S SL +D+ GFGF++ ++ EDA A+ L+++E NG ++V +++
Sbjct: 245 IVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQ 295
>gi|356566197|ref|XP_003551321.1| PREDICTED: uncharacterized protein LOC100808038 [Glycine max]
Length = 364
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 35/53 (66%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+++ + L+ R+S GFGF++++ E+A+ ++ L+ + GR+I VEK+K
Sbjct: 75 KVIDVHLVVDPWTRESRGFGFVTMETLEEAERCVKYLNRSVLEGRVITVEKAK 127
>gi|302657509|ref|XP_003020475.1| hypothetical protein TRV_05442 [Trichophyton verrucosum HKI 0517]
gi|291184312|gb|EFE39857.1| hypothetical protein TRV_05442 [Trichophyton verrucosum HKI 0517]
Length = 793
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
S++Y L +++ + S G+GF++ EDA +A R L+ + + G+ I +E
Sbjct: 106 SQSYPLKHATVVLDPQTKQSKGYGFVTFTDHEDAQSAARELNNSVFEGKKIKIE 159
>gi|298490358|ref|YP_003720535.1| RNP-1 like RNA-binding protein ['Nostoc azollae' 0708]
gi|298232276|gb|ADI63412.1| RNP-1 like RNA-binding protein ['Nostoc azollae' 0708]
Length = 111
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ + D + AAI LD EW GR + V K+K
Sbjct: 43 GFAFVEMSSDAEETAAIEALDGAEWMGRDLKVNKAKP 79
>gi|222636246|gb|EEE66378.1| hypothetical protein OsJ_22698 [Oryza sativa Japonica Group]
Length = 284
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+D SK ++ ++ + R S GF F+++D EDA+ I+ L+++ GR I VEKS
Sbjct: 93 KDYFSKEGRVTSCHVVLEPHTRVSRGFAFVTMDTVEDAERCIKYLNQSVMEGRNITVEKS 152
Query: 67 K 67
+
Sbjct: 153 R 153
>gi|54291012|dbj|BAD61690.1| putative transformer-SR ribonucleoprotein [Oryza sativa Japonica
Group]
gi|54291611|dbj|BAD62534.1| putative transformer-SR ribonucleoprotein [Oryza sativa Japonica
Group]
gi|215737009|dbj|BAG95938.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 273
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+D SK ++ ++ + R S GF F+++D EDA+ I+ L+++ GR I VEKS
Sbjct: 82 KDYFSKEGRVTSCHVVLEPHTRVSRGFAFVTMDTVEDAERCIKYLNQSVMEGRNITVEKS 141
Query: 67 K 67
+
Sbjct: 142 R 142
>gi|354568213|ref|ZP_08987379.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
gi|353541178|gb|EHC10648.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
Length = 103
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ ++ D +AAI LD EW GR + V K++
Sbjct: 53 RGFAFVEMNEDTQEEAAITELDGAEWMGRQLKVNKARP 90
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 21 LLSKSLNRDS----HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
++S SL +D+ GFGF++ ++ EDA A+ L+++E NG ++V +++
Sbjct: 245 IVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQ 295
>gi|302498318|ref|XP_003011157.1| hypothetical protein ARB_02679 [Arthroderma benhamiae CBS 112371]
gi|291174705|gb|EFE30517.1| hypothetical protein ARB_02679 [Arthroderma benhamiae CBS 112371]
Length = 803
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
S++Y L +++ + S G+GF++ EDA +A R L+ + + G+ I +E
Sbjct: 116 SQSYPLKHATVVLDPQTKQSKGYGFVTFTDHEDAQSAARELNNSVFEGKKIKIE 169
>gi|260796311|ref|XP_002593148.1| hypothetical protein BRAFLDRAFT_209787 [Branchiostoma floridae]
gi|260796325|ref|XP_002593155.1| hypothetical protein BRAFLDRAFT_143355 [Branchiostoma floridae]
gi|229278372|gb|EEN49159.1| hypothetical protein BRAFLDRAFT_209787 [Branchiostoma floridae]
gi|229278379|gb|EEN49166.1| hypothetical protein BRAFLDRAFT_143355 [Branchiostoma floridae]
Length = 88
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 34/56 (60%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+K +++ + L+ + S GFGF++ + DA+ A++ ++ + G++I V+++
Sbjct: 29 NKYGKIVEVLLMKDKITARSRGFGFITFENPRDAEVAVKEMNGQDIAGKVIKVDRA 84
>gi|424781794|ref|ZP_18208650.1| RNA-binding region RNP-1 [Campylobacter showae CSUNSWCD]
gi|421960326|gb|EKU11929.1| RNA-binding region RNP-1 [Campylobacter showae CSUNSWCD]
Length = 70
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ ++ D DA AI L+ E GR + V +SK
Sbjct: 30 SKGFGFVEIENDADALKAIEALNNKEVGGRALRVNESKP 68
>gi|354568550|ref|ZP_08987714.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
gi|353540273|gb|EHC09750.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
Length = 106
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ + DE+ + AI LD EW GR + V K++
Sbjct: 42 RGFAFVEMQSDEEEERAIEALDGAEWMGRDLKVNKARP 79
>gi|17561816|ref|NP_504717.1| Protein SPN-4 [Caenorhabditis elegans]
gi|28971605|dbj|BAC65239.1| PIP-1 [Caenorhabditis elegans]
gi|351064206|emb|CCD72494.1| Protein SPN-4 [Caenorhabditis elegans]
Length = 351
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
+R S GFGF++LD E + A L E+ GRII V ++ T
Sbjct: 86 DRGSKGFGFVTLDSIESCEKARAALHESHVQGRIIEVRRATPT 128
>gi|296134005|ref|YP_003641252.1| RNP-1 like RNA-binding protein [Thermincola potens JR]
gi|296032583|gb|ADG83351.1| RNP-1 like RNA-binding protein [Thermincola potens JR]
Length = 170
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ ++ DEDAD I ++ E+NGR++ V ++K
Sbjct: 127 SRGFGFVEVE-DEDADRLIAEMNGKEFNGRVLTVNEAKP 164
>gi|440473946|gb|ELQ42715.1| hypothetical protein OOU_Y34scaffold00194g28 [Magnaporthe oryzae
Y34]
gi|440489138|gb|ELQ68816.1| hypothetical protein OOW_P131scaffold00217g29 [Magnaporthe oryzae
P131]
Length = 182
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
S GFGF+ ++DA AI ++ E++GR I V+K+ T
Sbjct: 43 SRGFGFVRYTNEDDAQKAITAMNNVEFDGRTIRVDKASDT 82
>gi|303326560|ref|ZP_07357003.1| RNA-binding protein [Desulfovibrio sp. 3_1_syn3]
gi|345893773|ref|ZP_08844565.1| hypothetical protein HMPREF1022_03225 [Desulfovibrio sp.
6_1_46AFAA]
gi|302864476|gb|EFL87407.1| RNA-binding protein [Desulfovibrio sp. 3_1_syn3]
gi|345045809|gb|EGW49708.1| hypothetical protein HMPREF1022_03225 [Desulfovibrio sp.
6_1_46AFAA]
Length = 88
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 16 LLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+L + L+S + GFGF+ ++ D +ADAAI LD + GR + V ++K
Sbjct: 29 VLSVKLVSDRETGRARGFGFVEME-DGEADAAIEALDNFSFGGRTLRVNEAKP 80
>gi|356531425|ref|XP_003534278.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 282
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 24 KSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
KS + S G+ F+++ E+A AA+ D E +GRII VE +K
Sbjct: 106 KSKDGRSKGYAFVTMASGEEAQAAVDKFDSYELSGRIIRVELAK 149
>gi|409991967|ref|ZP_11275186.1| RNA-binding region RNP-1 [Arthrospira platensis str. Paraca]
gi|409937161|gb|EKN78606.1| RNA-binding region RNP-1 [Arthrospira platensis str. Paraca]
Length = 93
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + +++ AI LD EW GR + V K++
Sbjct: 41 SRGFGFVEMSSEDEEKVAIDALDGAEWKGRSLKVNKARP 79
>gi|170078237|ref|YP_001734875.1| RNA-binding protein [Synechococcus sp. PCC 7002]
gi|169885906|gb|ACA99619.1| RNA-binding protein [Synechococcus sp. PCC 7002]
Length = 95
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ + +++ +AAI LD EW GR + V K+K
Sbjct: 41 PRGFAFVEMSSEDEENAAIEALDGAEWMGRDLKVNKAKP 79
>gi|434391462|ref|YP_007126409.1| RNP-1 like RNA-binding protein [Gloeocapsa sp. PCC 7428]
gi|428263303|gb|AFZ29249.1| RNP-1 like RNA-binding protein [Gloeocapsa sp. PCC 7428]
Length = 101
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ ++ + AI LD EW GR + V K+K
Sbjct: 41 PRGFGFVEMESEAAESTAIEALDGAEWMGRTMKVNKAKP 79
>gi|219881900|gb|ACL52165.1| cold response protein 2 [Metarhizium anisopliae]
Length = 183
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ ++ DA AI ++ E++GR I V+K+
Sbjct: 42 SRGFGFVRYTQENDAQNAIAAMNNVEFDGRTIRVDKA 78
>gi|123473695|ref|XP_001320034.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121902831|gb|EAY07811.1| hypothetical protein TVAG_312100 [Trichomonas vaginalis G3]
Length = 215
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
++L + + NR S G+GF+S EDA AI +++ TE +GR I VE +K
Sbjct: 56 EVLSSKIPTNQANR-SKGYGFVSFALKEDAQKAIDSMNNTELDGRKIEVEFAK 107
>gi|119357086|ref|YP_911730.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
gi|119354435|gb|ABL65306.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
Length = 90
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
RD S+ Q+ ++++ + S GFGF+ + D +A AI ++++ + GR I V ++
Sbjct: 18 RDAFSQFGQVDSANIINDKFSGRSKGFGFIEMSNDSEAREAIESMNDQDLKGRTIKVNEA 77
Query: 67 KS 68
K
Sbjct: 78 KP 79
>gi|194477264|ref|YP_002049443.1| RNA-binding protein RbpD [Paulinella chromatophora]
gi|171192271|gb|ACB43233.1| RNA-binding protein RbpD [Paulinella chromatophora]
Length = 132
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 2 IGKASRDRESKTYQLL-----RLSLLSKSLNRDS---HGFGFLSLDRDEDADAAIRTLDE 53
+G S D E + Q L +S +S L+R++ GF F+ + + D AI L +
Sbjct: 5 VGNLSFDAEQEDLQGLFAQYGDVSKVSLPLDRETGRKRGFAFVEMANEADEQKAIDDLQD 64
Query: 54 TEWNGRIIHVEKSKS 68
EW GR+I V K++
Sbjct: 65 VEWMGRMIRVNKAEP 79
>gi|258564224|ref|XP_002582857.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237908364|gb|EEP82765.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 146
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ + +ADAA+ + E++GR+I V+K+
Sbjct: 42 SRGFGFVRFASEAEADAAMNAMSNQEFDGRMIRVDKA 78
>gi|296203566|ref|XP_002748951.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Callithrix
jacchus]
Length = 604
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ L+ E +G+ I+V +++
Sbjct: 198 SKGFGFVSFERGEDAQKAVDELNGKELSGKQIYVGRAQ 235
>gi|313225077|emb|CBY20870.1| unnamed protein product [Oikopleura dioica]
gi|313245842|emb|CBY34831.1| unnamed protein product [Oikopleura dioica]
Length = 272
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+R S GFGF+S +DAD A R ++ T+ +GR+I V + +
Sbjct: 165 DRGSKGFGFVSYADKDDADRAKREINHTKIDGRMIEVNDATA 206
>gi|197210363|gb|ACH48189.1| alternative splicing factor SRp20/9G8 [Haplopelma schmidti]
Length = 139
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 28 RDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
R+ GF F+ D DEDA+ AIR ++ NG I V+ S++
Sbjct: 37 RNPPGFAFIEFDDDEDANEAIREMNGATINGSEIRVDMSRNN 78
>gi|449298839|gb|EMC94854.1| hypothetical protein BAUCODRAFT_149939 [Baudoinia compniacensis UAMH
10762]
Length = 2038
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+ +++ R+S GFGF+ + E+ADAA L + GR + +EK++
Sbjct: 1853 KCNIMRDPHTRESRGFGFVKMTTPEEADAAKDGLQGEVYEGRTLSIEKAR 1902
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G++I V +++
Sbjct: 214 LSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 263
>gi|427726014|ref|YP_007073291.1| RNP-1 like RNA-binding protein [Leptolyngbya sp. PCC 7376]
gi|427357734|gb|AFY40457.1| RNP-1 like RNA-binding protein [Leptolyngbya sp. PCC 7376]
Length = 100
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ + +DE+ AAI LD +W GR + V K++
Sbjct: 41 PRGFAFVEMSKDEEELAAIEALDGADWMGRQLKVNKARP 79
>gi|423225541|ref|ZP_17212008.1| hypothetical protein HMPREF1062_04194 [Bacteroides
cellulosilyticus CL02T12C19]
gi|392632469|gb|EIY26429.1| hypothetical protein HMPREF1062_04194 [Bacteroides
cellulosilyticus CL02T12C19]
Length = 129
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + DE+ AI L+ETE+ G+ I + ++
Sbjct: 41 SRGFGFVEMPNDEEGQKAIDALNETEFEGKNIAISVARP 79
>gi|224539725|ref|ZP_03680264.1| hypothetical protein BACCELL_04634 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518648|gb|EEF87753.1| hypothetical protein BACCELL_04634 [Bacteroides cellulosilyticus
DSM 14838]
Length = 130
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + DE+ AI L+ETE+ G+ I + ++
Sbjct: 41 SRGFGFVEMPNDEEGQKAIDALNETEFEGKNIAISVARP 79
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ + NG+ I V +++
Sbjct: 230 SRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQ 267
>gi|53804863|ref|YP_113486.1| RNA-binding protein [Methylococcus capsulatus str. Bath]
gi|53758624|gb|AAU92915.1| RNA-binding protein [Methylococcus capsulatus str. Bath]
Length = 95
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 2 IGKASRDRESKTYQLLRLS--LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGR 59
+G A +R Y ++ + ++ ++ R S GFGF+ + D++A AAI L+ E +GR
Sbjct: 14 VGDADLERTFAAYGTVKSAQVVMDRATGR-SRGFGFVEMGSDQEAQAAIAGLNGKEMDGR 72
Query: 60 IIHVEKSKST 69
+ V +++
Sbjct: 73 NLMVNEARPP 82
>gi|322778821|gb|EFZ09237.1| hypothetical protein SINV_07840 [Solenopsis invicta]
Length = 606
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+G++++ EDA I+ L TE +GR+I VEK+K
Sbjct: 60 YGYVTMSSSEDAAKCIQHLHRTELHGRVISVEKAK 94
>gi|308466765|ref|XP_003095634.1| hypothetical protein CRE_13671 [Caenorhabditis remanei]
gi|308244633|gb|EFO88585.1| hypothetical protein CRE_13671 [Caenorhabditis remanei]
Length = 328
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 24 KSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
KS +RDS F F+ D DA A+R D E++G+ + VE
Sbjct: 36 KSRSRDSPAFAFIQFDDRRDAKEAVRARDGYEFDGKRLRVE 76
>gi|428168370|gb|EKX37316.1| hypothetical protein GUITHDRAFT_78211 [Guillardia theta CCMP2712]
Length = 106
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
S GFGF+ +R ED++ AIR L E+E GR + K S
Sbjct: 53 SRGFGFVIYERKEDSEEAIRVLHESEIEGRKVQSWKPDSV 92
>gi|186682695|ref|YP_001865891.1| RNP-1 like RNA-binding protein [Nostoc punctiforme PCC 73102]
gi|186465147|gb|ACC80948.1| RNP-1 like RNA-binding protein [Nostoc punctiforme PCC 73102]
Length = 104
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
R+ L + GF F+ ++ D AAI LD EW GR + V K+K
Sbjct: 29 RVQLPTDRETGRPRGFAFVEMESDTQEQAAIDALDGAEWMGRDLKVNKAKP 79
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G++I V +++
Sbjct: 231 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 280
>gi|172035063|ref|YP_001801564.1| RNA-binding protein [Cyanothece sp. ATCC 51142]
gi|354551929|ref|ZP_08971237.1| RNP-1 like RNA-binding protein [Cyanothece sp. ATCC 51472]
gi|171696517|gb|ACB49498.1| RNA-binding protein [Cyanothece sp. ATCC 51142]
gi|353555251|gb|EHC24639.1| RNP-1 like RNA-binding protein [Cyanothece sp. ATCC 51472]
Length = 81
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ +D +E+ AI TLD EW GR + V +++
Sbjct: 43 GFAFVEMDTEEEESKAIDTLDGAEWMGRSMKVNQARP 79
>gi|452846476|gb|EME48408.1| hypothetical protein DOTSEDRAFT_39776 [Dothistroma septosporum
NZE10]
Length = 185
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 12 KTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
K Q+ + +++ R+S GFGF+ + +ADAA L + GR + +EK++
Sbjct: 93 KYGQVEKCNIMRDPHTRESRGFGFVKMVTSAEADAAKEALQGEVYEGRTLSIEKAR 148
>gi|428306262|ref|YP_007143087.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
gi|428247797|gb|AFZ13577.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
Length = 111
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ ++ D + + AI LD EW GR + V K+K
Sbjct: 43 GFAFVEMETDAEEEKAIEALDGAEWMGRDLKVNKAKP 79
>gi|330843751|ref|XP_003293810.1| hypothetical protein DICPUDRAFT_84328 [Dictyostelium purpureum]
gi|325075834|gb|EGC29677.1| hypothetical protein DICPUDRAFT_84328 [Dictyostelium purpureum]
Length = 292
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
++ ++L ++S GFGF++ ++A AI LD ++ +G +I VEKS+
Sbjct: 93 KIAECTILVDPNTKESRGFGFVTFLSSDEATDAISRLDSSKLDGNVIRVEKSR 145
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 21 LLSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+ S S+ RD S GFGF++ + E A A+ TL++TE++G+ ++V +++
Sbjct: 254 ITSASIARDDQGKSRGFGFVNYIKHEAASVAVETLNDTEFHGQKLYVGRAQ 304
>gi|21388662|dbj|BAC00787.1| glycine-rich RNA-binding protein [Physcomitrella patens]
Length = 155
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S GFGF++ D+DA+AA++ LD + GR I V
Sbjct: 82 SRGFGFVTFATDQDAEAALQALDGRDLAGRTIRV 115
>gi|385808623|ref|YP_005845019.1| RRM domain-containing protein [Ignavibacterium album JCM 16511]
gi|383800671|gb|AFH47751.1| RRM domain protein [Ignavibacterium album JCM 16511]
Length = 83
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 28 RDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
R S GFGF+ + + +A AAI L+ +E GR I V ++K
Sbjct: 41 RRSKGFGFVEFETEAEASAAINALNGSEVKGRNIIVSEAKP 81
>gi|18415425|ref|NP_567594.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|51971865|dbj|BAD44597.1| putative protein [Arabidopsis thaliana]
gi|107738041|gb|ABF83619.1| At4g20030 [Arabidopsis thaliana]
gi|332658864|gb|AEE84264.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 152
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++ + L+ + S G+ F+ +DA AI T+D +NGR+I+++ +K
Sbjct: 65 EIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAKP 118
>gi|428210291|ref|YP_007094644.1| RNP-1 like RNA-binding protein [Chroococcidiopsis thermalis PCC
7203]
gi|428012212|gb|AFY90775.1| RNP-1 like RNA-binding protein [Chroococcidiopsis thermalis PCC
7203]
Length = 101
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ +D D + AI LD EW GR + V K+K
Sbjct: 43 GFAFVEMDTDAEETTAIDALDGAEWMGRNMKVNKAKP 79
>gi|406886422|gb|EKD33455.1| hypothetical protein ACD_76C00026G0004 [uncultured bacterium]
Length = 83
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+++ ++ L S GFGF+ + DE A+AAI+ LD ++ GR I V ++
Sbjct: 28 EVVSAQIVMDKLTGRSRGFGFVEMATDELAEAAIKALDGKDFLGRPITVNVARP 81
>gi|320586919|gb|EFW99582.1| glycine-rich RNA-binding protein [Grosmannia clavigera kw1407]
Length = 462
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ + DA+ AI +++ E++GR I V+++
Sbjct: 323 SRGFGFVRYANEADAETAIASMNNIEFDGRTIRVDRA 359
>gi|168016725|ref|XP_001760899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687908|gb|EDQ74288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 155
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S GFGF++ D+DA+AA++ LD + GR I V
Sbjct: 82 SRGFGFVTFATDQDAEAALQALDGRDLAGRTIRV 115
>gi|409243|gb|AAA27362.1| RNA-binding protein [Synechococcus sp.]
Length = 100
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 19 LSLLSKSLNRDS---HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+S +S ++R++ F F+ ++ D DAAI LD EW GR + V K++
Sbjct: 27 VSRVSLPVDRETGRLRAFAFIEMEEDAHEDAAISELDGAEWFGRQLRVSKARP 79
>gi|388499174|gb|AFK37653.1| unknown [Lotus japonicus]
Length = 302
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF++ ++ ++AIR+LD + NGR I V ++ S
Sbjct: 258 SRGFGFVTFSSPDEVNSAIRSLDGADLNGRAIKVSQADS 296
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
>gi|332024267|gb|EGI64471.1| Scaffold attachment factor B2 [Acromyrmex echinatior]
Length = 907
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
SK +++ +++ + + +G++++ EDA I+ L TE +GR+I VEK+K
Sbjct: 339 SKYGKVIGAKVVTNARTPGARCYGYVTMSSSEDAAKCIQHLHRTELHGRVISVEKAK 395
>gi|401888930|gb|EJT52874.1| hypothetical protein A1Q1_00779 [Trichosporon asahii var. asahii
CBS 2479]
gi|406697640|gb|EKD00896.1| hypothetical protein A1Q2_04769 [Trichosporon asahii var. asahii
CBS 8904]
Length = 141
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF++ +A+AAI ++E E +GR + V + S
Sbjct: 9 SRGFGFVTYGNQAEAEAAINAMNEQELDGRRVRVNMANS 47
>gi|365760982|gb|EHN02660.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 466
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 21 LLSKSLNRDS----HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
++S SL +D+ GFGF++ + EDA A+ L+E++ NG ++V +++
Sbjct: 134 IVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYVGRAQ 184
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G++I V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
>gi|308459689|ref|XP_003092160.1| hypothetical protein CRE_20046 [Caenorhabditis remanei]
gi|308254090|gb|EFO98042.1| hypothetical protein CRE_20046 [Caenorhabditis remanei]
Length = 333
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 24 KSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
KS +RDS F F+ D DA A+R D E++G+ + VE
Sbjct: 36 KSRSRDSPAFAFIQFDDRRDAKEAVRARDGYEFDGKRLRVE 76
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G++I V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
>gi|363814334|ref|NP_001242808.1| uncharacterized protein LOC100793319 [Glycine max]
gi|255639879|gb|ACU20232.1| unknown [Glycine max]
Length = 289
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 24 KSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
KS + S G+ F+++ E+A AA+ D E +GRII VE +K
Sbjct: 113 KSKDGRSKGYAFVTMASGEEAQAAVDKFDSYELSGRIIRVELAK 156
>gi|268680880|ref|YP_003305311.1| RNP-1 like RNA-binding protein [Sulfurospirillum deleyianum DSM
6946]
gi|268618911|gb|ACZ13276.1| RNP-1 like RNA-binding protein [Sulfurospirillum deleyianum DSM
6946]
Length = 101
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + D +A AAI +E E GR + V +++
Sbjct: 41 SKGFGFVEMPNDSEAKAAIEATNEKEIGGRTLKVNEARP 79
>gi|91202563|emb|CAJ72202.1| rna binding protein [Candidatus Kuenenia stuttgartiensis]
Length = 126
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 33/52 (63%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
Q+ ++++ + +S GFGF+ + +A AA+ +L+ + NGR+++V ++
Sbjct: 26 QVTSVTIIKDKFSGESRGFGFVEMPSRAEAQAALDSLNGKDLNGRVLNVNEA 77
>gi|428300369|ref|YP_007138675.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 6303]
gi|428236913|gb|AFZ02703.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 6303]
Length = 115
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ ++ + AAI LD EW GR + V K++
Sbjct: 43 GFGFVEMESEAAETAAISALDGAEWMGRALKVNKARP 79
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G++I V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
>gi|170098488|ref|XP_001880463.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644901|gb|EDR09150.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 154
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S GFGF++ ++ADAAI L+E E +GR I V
Sbjct: 43 SRGFGFVTFSSGQEADAAIGGLNEQELDGRRIKV 76
>gi|427734808|ref|YP_007054352.1| RRM domain-containing RNA-binding protein [Rivularia sp. PCC
7116]
gi|427369849|gb|AFY53805.1| RRM domain-containing RNA-binding protein [Rivularia sp. PCC
7116]
Length = 98
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ L + D AI LD EW GR I V K+K
Sbjct: 42 RGFAFVDLSEESQEDEAISELDGAEWMGRQIRVNKAKP 79
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G++I V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G++I V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G++I V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
>gi|291286869|ref|YP_003503685.1| RNP-1 like RNA-binding protein [Denitrovibrio acetiphilus DSM
12809]
gi|290884029|gb|ADD67729.1| RNP-1 like RNA-binding protein [Denitrovibrio acetiphilus DSM
12809]
Length = 89
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + + A AAI L+ETE +GR + V ++K
Sbjct: 41 SKGFGFVEMANSDQAKAAIDKLNETELDGRNLTVNEAKP 79
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G++I V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G++I V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G++I V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G++I V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G++I V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
>gi|434405771|ref|YP_007148656.1| RRM domain-containing RNA-binding protein [Cylindrospermum
stagnale PCC 7417]
gi|428260026|gb|AFZ25976.1| RRM domain-containing RNA-binding protein [Cylindrospermum
stagnale PCC 7417]
Length = 103
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ ++ D AAI LD EW GR + V K+K
Sbjct: 41 PRGFAFVEMETDVQEQAAIDALDGAEWMGRDLKVNKAKP 79
>gi|406911424|gb|EKD51218.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 125
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+++ ++ N S GFGF+ + DE+A AI L+ E +GR I V +++
Sbjct: 28 EVVSAQVIQDKFNGRSKGFGFVEMANDEEAQKAIDDLNNKEIDGRKIIVNEARP 81
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G++I V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G++I V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 28/41 (68%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF++ ++ E+A A+ ++ E NGR+++V +++
Sbjct: 227 NGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYVGRAQ 267
>gi|2827657|emb|CAA16611.1| putative protein [Arabidopsis thaliana]
gi|7268798|emb|CAB79003.1| putative protein [Arabidopsis thaliana]
Length = 115
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++ + L+ + S G+ F+ +DA AI T+D +NGR+I+++ +K
Sbjct: 28 EIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAKP 81
>gi|110638796|ref|YP_679005.1| RNA binding protein [Cytophaga hutchinsonii ATCC 33406]
gi|110281477|gb|ABG59663.1| RNA binding protein [Cytophaga hutchinsonii ATCC 33406]
Length = 143
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 19 LSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+ ++S S GFGF+ + D A AI L+ E NGR I V KS+
Sbjct: 30 VKIISDKFTGRSKGFGFVEMPDDAAAQKAIDELNGAEVNGRTIVVNKSE 78
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G++I V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
>gi|411118097|ref|ZP_11390478.1| RRM domain-containing RNA-binding protein [Oscillatoriales
cyanobacterium JSC-12]
gi|410711821|gb|EKQ69327.1| RRM domain-containing RNA-binding protein [Oscillatoriales
cyanobacterium JSC-12]
Length = 100
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ ++ D + D AI LD EW GR + V K++
Sbjct: 42 RGFAFVEMETDAEEDKAIEALDGAEWMGRDLKVNKARP 79
>gi|308504253|ref|XP_003114310.1| hypothetical protein CRE_27078 [Caenorhabditis remanei]
gi|308261695|gb|EFP05648.1| hypothetical protein CRE_27078 [Caenorhabditis remanei]
Length = 371
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
+R S GFGF++LD E + A L E+ GRII V ++ T
Sbjct: 98 DRGSKGFGFVTLDSIESCERARAALHESHVQGRIIEVRRATPT 140
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 27/38 (71%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S ++ EDA+ A+ ++ + NG+++ V +++
Sbjct: 230 SKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQ 267
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G++I V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
>gi|340369829|ref|XP_003383450.1| PREDICTED: RNA-binding protein 28-like [Amphimedon queenslandica]
Length = 730
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
S G+GF+ L+ DA A++ L+ETE+ GR I V+
Sbjct: 255 SLGYGFVQLESFVDAHKALKNLNETEFKGRKIRVD 289
>gi|218437654|ref|YP_002375983.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7424]
gi|218170382|gb|ACK69115.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7424]
Length = 110
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ LD ++ ++AI LD EW GR + V K++
Sbjct: 43 GFAFVDLDTEDQENSAIEALDGAEWMGRELKVSKARP 79
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G++I V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
>gi|383861384|ref|XP_003706166.1| PREDICTED: SAFB-like transcription modulator-like [Megachile
rotundata]
Length = 892
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
SK +++ +++ + + +G++++ EDA I+ L TE +GR+I VEK+K
Sbjct: 320 SKYGKVIGAKVVTNARTPGARCYGYVTMSTSEDAAKCIQHLHRTELHGRVISVEKAK 376
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G++I V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
>gi|328787651|ref|XP_393282.4| PREDICTED: SAFB-like transcription modulator-like [Apis mellifera]
Length = 887
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
SK +++ +++ + + +G++++ EDA I+ L TE +GR+I VEK+K
Sbjct: 317 SKYGKVIGAKVVTNARTPGARCYGYVTMSTSEDAAKCIQHLHRTELHGRVISVEKAK 373
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 27/38 (71%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF++ ++ E+A A+ ++ E NGR+++V +++
Sbjct: 230 SKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQ 267
>gi|21554348|gb|AAM63455.1| unknown [Arabidopsis thaliana]
Length = 152
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++ + L+ + S G+ F+ +DA AI T+D +NGR+I+++ +K
Sbjct: 65 EIAEVKLIKDEAMQRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAKP 118
>gi|350409251|ref|XP_003488670.1| PREDICTED: SAFB-like transcription modulator-like [Bombus
impatiens]
Length = 884
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
SK +++ +++ + + +G++++ EDA I+ L TE +GR+I VEK+K
Sbjct: 314 SKYGKVIGAKVVTNARTPGARCYGYVTMSTSEDAAKCIQHLHRTELHGRVISVEKAK 370
>gi|345569077|gb|EGX51946.1| hypothetical protein AOL_s00043g680 [Arthrobotrys oligospora ATCC
24927]
Length = 150
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ + DA A+ ++ TE++GR I V+K+
Sbjct: 42 SRGFGFVRFTNEADATTAMNAMNNTEFDGRYIRVDKA 78
>gi|307152307|ref|YP_003887691.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7822]
gi|306982535|gb|ADN14416.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7822]
Length = 116
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 25 SLNRDS---HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++R+S GF F+ LD D + AI LD EW GR + V K++
Sbjct: 33 PIDRESGRVRGFAFVDLDSDAEETKAIEALDGAEWMGRELKVSKARP 79
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
GFGF+S + EDA A+ ++ E NGRI+ V +++
Sbjct: 232 GFGFVSFENHEDAQKAVDEMNGKELNGRIMFVGRAQ 267
>gi|380011843|ref|XP_003690003.1| PREDICTED: SAFB-like transcription modulator-like [Apis florea]
Length = 887
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
SK +++ +++ + + +G++++ EDA I+ L TE +GR+I VEK+K
Sbjct: 317 SKYGKVIGAKVVTNARTPGARCYGYVTMSTSEDAAKCIQHLHRTELHGRVISVEKAK 373
>gi|427417658|ref|ZP_18907841.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
gi|425760371|gb|EKV01224.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
Length = 98
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 18 RLSLLSKSLNRDS---HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
R++ +S ++R+S GF F+ + ED AI LD EW R++ V ++K
Sbjct: 26 RVNRVSLPMDRESGRPRGFAFVEMAAKEDEAKAIEALDGAEWMDRVMRVNEAKP 79
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 27/38 (71%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S ++ EDA+ A+ ++ + NG+++ V +++
Sbjct: 230 SKGFGFVSFEKHEDANQAVEDMNGKDINGKMVFVGRAQ 267
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E G++I V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQ 267
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E G++I V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQ 267
>gi|66516797|ref|XP_397567.2| PREDICTED: hypothetical protein LOC409486 [Apis mellifera]
Length = 416
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+GF+ + R+EDA AAI+ L + + G I+VE+S
Sbjct: 45 YGFVHMAREEDAAAAIKALHNSNFKGATINVEQS 78
>gi|383852950|ref|XP_003701988.1| PREDICTED: uncharacterized protein LOC100875854 [Megachile
rotundata]
Length = 416
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+GF+ + R+EDA AAI+ L + + G I+VE+S
Sbjct: 45 YGFVHMAREEDAAAAIKALHNSNFKGATINVEQS 78
>gi|380024820|ref|XP_003696188.1| PREDICTED: RNA-binding protein 4.1-like, partial [Apis florea]
Length = 385
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+GF+ + R+EDA AAI+ L + + G I+VE+S
Sbjct: 45 YGFVHMAREEDAAAAIKALHNSNFKGATINVEQS 78
>gi|350402764|ref|XP_003486594.1| PREDICTED: hypothetical protein LOC100743736 isoform 2 [Bombus
impatiens]
Length = 382
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+GF+ + R+EDA AAI+ L + + G I+VE+S
Sbjct: 51 YGFVHMAREEDAAAAIKALHNSNFKGATINVEQS 84
>gi|340728027|ref|XP_003402334.1| PREDICTED: hypothetical protein LOC100650942 [Bombus terrestris]
gi|350402761|ref|XP_003486593.1| PREDICTED: hypothetical protein LOC100743736 isoform 1 [Bombus
impatiens]
Length = 416
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+GF+ + R+EDA AAI+ L + + G I+VE+S
Sbjct: 45 YGFVHMAREEDAAAAIKALHNSNFKGATINVEQS 78
>gi|322783676|gb|EFZ11014.1| hypothetical protein SINV_11528 [Solenopsis invicta]
Length = 402
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+GF+ + R+EDA AAI+ L + + G I+VE+S
Sbjct: 50 YGFVHMAREEDAAAAIKALHNSNFKGATINVEQS 83
>gi|318041575|ref|ZP_07973531.1| RNA-binding protein [Synechococcus sp. CB0101]
Length = 90
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 22 LSKSLNRDS---HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S L+RD+ GF F+ + ++ D AI L EW GR+I V K++
Sbjct: 30 CSVPLDRDTGRKRGFAFVEMAQEADEQKAIDDLQNVEWMGRMIRVNKAEP 79
>gi|308500414|ref|XP_003112392.1| hypothetical protein CRE_31171 [Caenorhabditis remanei]
gi|308266960|gb|EFP10913.1| hypothetical protein CRE_31171 [Caenorhabditis remanei]
Length = 362
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
+R S GFGF++LD E + A L E+ GRII V ++ T
Sbjct: 89 DRGSKGFGFVTLDSIESCERARAALHESHVQGRIIEVRRATPT 131
>gi|307193686|gb|EFN76369.1| RNA-binding protein 14 [Harpegnathos saltator]
Length = 361
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+GF+ + R+EDA AAI+ L + + G I+VE+S
Sbjct: 45 YGFVHMAREEDAAAAIKALHNSNFKGATINVEQS 78
>gi|221221726|gb|ACM09524.1| RNA-binding protein 4B [Salmo salar]
gi|221222322|gb|ACM09822.1| RNA-binding protein 4B [Salmo salar]
Length = 166
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
F F+ +D ++A AI+ LD E+ G+ IHV+ SKS
Sbjct: 112 FAFVHMDNSDEALDAIKGLDNVEFQGKRIHVQISKS 147
>gi|255930353|ref|XP_002556736.1| Pc06g01290 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581349|emb|CAP79122.1| Pc06g01290 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 140
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ D++A AA+ ++ E++GR I V+K+
Sbjct: 42 SRGFGFVRFSTDDEATAAMNAMNNQEFDGRQIRVDKA 78
>gi|406965367|gb|EKD91001.1| Glycine-rich RNA-binding protein [uncultured bacterium]
Length = 87
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
R+ SK ++++ ++L S GFGF+ D D D AI+ ++ + +GR I V ++
Sbjct: 23 REAFSKYGEIIQATVLKDRQTGRSRGFGFVEFANDADGDKAIQEMNGADMDGRNIVVNEA 82
Query: 67 KS 68
+
Sbjct: 83 RP 84
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 27/38 (71%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S ++ EDA+ A+ ++ + NG+++ V +++
Sbjct: 230 SKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQ 267
>gi|405121733|gb|AFR96501.1| glycine-rich RNA binding protein [Cryptococcus neoformans var.
grubii H99]
Length = 146
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF++ ++A+AAI ++E E +GR + V + S
Sbjct: 9 SRGFGFVTYGSPQEAEAAIAAMNEQELDGRRVRVNMANS 47
>gi|367000405|ref|XP_003684938.1| hypothetical protein TPHA_0C03520 [Tetrapisispora phaffii CBS 4417]
gi|357523235|emb|CCE62504.1| hypothetical protein TPHA_0C03520 [Tetrapisispora phaffii CBS 4417]
Length = 442
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S G+GF+S EDA A+ + TE NGR I +
Sbjct: 206 SRGYGFISFSNQEDAQTAMDKMQSTELNGRQIRI 239
>gi|317970365|ref|ZP_07971755.1| RNA-binding protein RbpD [Synechococcus sp. CB0205]
Length = 89
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 15 QLLRLSLLSKSLNRDS---HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
Q +S S L+R++ GF F+ + D D AI L EW GR+I V K+
Sbjct: 23 QYGEVSKCSLPLDRETGRKRGFAFVEMANDADEQKAIDDLQNVEWMGRMIRVNKA 77
>gi|443726394|gb|ELU13574.1| hypothetical protein CAPTEDRAFT_6610 [Capitella teleta]
Length = 307
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S +GF+++ ++A I+ L TE +GR+I VE++KS
Sbjct: 64 SRCYGFVTMSTPDEASKCIQHLHRTELHGRMISVERAKS 102
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E G++I V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQ 267
>gi|302340505|ref|YP_003805711.1| RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM
11293]
gi|301637690|gb|ADK83117.1| RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM
11293]
Length = 88
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
Q+ +++++ S GFGF+ ++ + A+AAI LD T +GR + V ++K
Sbjct: 28 QVNSVNIITDRYTGQSKGFGFVEMEEMDAAEAAISALDGTSLDGRELRVNEAK 80
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 27/38 (71%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S ++ EDA+ A+ ++ + NG+++ V +++
Sbjct: 230 SKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQ 267
>gi|88602845|ref|YP_503023.1| RNA recognition motif-containing protein [Methanospirillum
hungatei JF-1]
gi|88188307|gb|ABD41304.1| RNA-binding region RNP-1 (RNA recognition motif)
[Methanospirillum hungatei JF-1]
Length = 112
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 27/40 (67%)
Query: 29 DSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ GFGF+ + E+A A+ +L++TE+ GR + +++++
Sbjct: 37 EQKGFGFVEMSSSEEAQNAMDSLNQTEFGGRTLRIDEARP 76
>gi|336464677|gb|EGO52917.1| hypothetical protein NEUTE1DRAFT_27845, partial [Neurospora
tetrasperma FGSC 2508]
Length = 102
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ D DA+ AI +D E++GR + V+K+
Sbjct: 35 SRGFGFVRYGNDADAENAIANMDGQEFDGRRVRVDKA 71
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF++ ++ E+A A+ ++ E GR+++V +++
Sbjct: 227 NGQSRGFGFVNFEKHEEAQKAVSNMNGKELGGRVLYVGRAQ 267
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G++I V +++
Sbjct: 218 LSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
>gi|443315198|ref|ZP_21044702.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
6406]
gi|442785209|gb|ELR95045.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
6406]
Length = 103
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++ R+SL + GF F+ + + + D AI LD EW GR + V K++
Sbjct: 26 EVSRVSLPTDRETGRPRGFAFVDMQAEAEEDKAIEALDGAEWMGRDMRVNKARP 79
>gi|359482021|ref|XP_002276063.2| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Vitis vinifera]
gi|297740158|emb|CBI30340.3| unnamed protein product [Vitis vinifera]
Length = 133
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S+ Q++ ++ ++ S GFGF++ +E+A A +D E NGR I V+ +K
Sbjct: 55 SQYGQVVEAKIVMDRVSDRSKGFGFVTFASEEEAQKARTEMDGKELNGRTIFVDYAKP 112
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ + NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQ 267
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S +R EDA A+ ++ + NG+ + V +++
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQ 267
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S +R EDA A+ ++ + NG+ + V +++
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQ 267
>gi|87124729|ref|ZP_01080577.1| RNA-binding protein RbpD [Synechococcus sp. RS9917]
gi|86167608|gb|EAQ68867.1| RNA-binding protein RbpD [Synechococcus sp. RS9917]
Length = 112
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
GF F+ ++ D D AI L EW GR+I V K+
Sbjct: 43 GFAFVEMNNDSDEQKAIDDLQNVEWMGRMIRVNKA 77
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E G++I V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQ 267
>gi|47209605|emb|CAF93000.1| unnamed protein product [Tetraodon nigroviridis]
Length = 391
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
FGF+ +D +AD AIR L + E NG+ ++VE S+
Sbjct: 37 FGFVHMDDKAEADEAIRNLHQYELNGQPMNVELSR 71
>gi|410906771|ref|XP_003966865.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 416
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
FGF+ +D +AD AIR L + E NG+ ++VE S+
Sbjct: 37 FGFVHMDDKAEADEAIRNLHQYELNGQPMNVELSR 71
>gi|328874161|gb|EGG22527.1| Zinc finger protein [Dictyostelium fasciculatum]
Length = 1780
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 20 SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65
S+L + S GFGF++ E+AD AIR +D T+ +G I V+K
Sbjct: 275 SVLVDPNTKISRGFGFVTYATSEEADEAIRLMDGTKIDGYPIKVQK 320
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 27/38 (71%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF++ ++ E+A A+ ++ E NGR+++V +++
Sbjct: 230 SKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQ 267
>gi|302892801|ref|XP_003045282.1| hypothetical protein NECHADRAFT_43518 [Nectria haematococca mpVI
77-13-4]
gi|256726207|gb|EEU39569.1| hypothetical protein NECHADRAFT_43518 [Nectria haematococca mpVI
77-13-4]
Length = 718
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
S+ Y + +++ ++S G+GF++ +DA A + L EW+GR + +E
Sbjct: 64 SQHYPVKHATVVVDQKTKESRGYGFVTFADADDATEAKKALHNQEWDGRRLRIE 117
>gi|443323178|ref|ZP_21052187.1| RRM domain-containing RNA-binding protein [Gloeocapsa sp. PCC
73106]
gi|442787088|gb|ELR96812.1| RRM domain-containing RNA-binding protein [Gloeocapsa sp. PCC
73106]
Length = 95
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
+ GF F+ ++ + + DAAI LD EW R I V K+K
Sbjct: 41 ARGFAFVEMETEAEEDAAITALDGAEWMDREIKVNKAKPP 80
>gi|221222294|gb|ACM09808.1| RNA-binding protein 4B [Salmo salar]
Length = 229
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
F F+ +D ++A AI+ LD E+ G+ IHV+ SKS
Sbjct: 112 FAFVHMDNSDEALDAIKGLDNVEFQGKRIHVQISKS 147
>gi|297742089|emb|CBI33876.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S G+ F+++D E+A A + D E +GRII VE +K
Sbjct: 98 SRGYAFVTMDSGEEAQAVVEKFDSYELSGRIIRVEFAK 135
Score = 34.3 bits (77), Expect = 9.9, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
R+ S + + + ++ S + S G+GF S E+A+AAI LD E GR +H++ S
Sbjct: 175 REFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAISALDGKELMGRPVHLKFS 234
Query: 67 KST 69
T
Sbjct: 235 VKT 237
>gi|42407939|dbj|BAD09078.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|125604308|gb|EAZ43633.1| hypothetical protein OsJ_28256 [Oryza sativa Japonica Group]
gi|215697914|dbj|BAG92121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 305
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+++ E+AD AI L+ + NGR+++V ++
Sbjct: 167 SRGFGFVTMSTIEEADKAIEMLNRYDINGRLLNVNRA 203
>gi|125562527|gb|EAZ07975.1| hypothetical protein OsI_30233 [Oryza sativa Indica Group]
Length = 306
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+++ E+AD AI L+ + NGR+++V ++
Sbjct: 168 SRGFGFVTMSTIEEADKAIEMLNRYDINGRLLNVNRA 204
>gi|209155952|gb|ACI34208.1| RNA-binding protein 4B [Salmo salar]
Length = 345
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
F F+ + ++A AI+ LD T++ G+ IHV+ SKS
Sbjct: 112 FAFIHMSNSDEAKDAIKGLDNTDFQGKRIHVQMSKS 147
>gi|58269650|ref|XP_571981.1| glycine-rich RNA binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134113905|ref|XP_774200.1| hypothetical protein CNBG1820 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256835|gb|EAL19553.1| hypothetical protein CNBG1820 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228217|gb|AAW44674.1| glycine-rich RNA binding protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 161
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF++ ++A+AAI ++E E +GR + V + S
Sbjct: 44 SRGFGFVTYGSPQEAEAAIAAMNEQELDGRRVRVNMANS 82
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 27/38 (71%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S ++ EDA+ A+ ++ + NG+++ V +++
Sbjct: 230 SKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQ 267
>gi|390600853|gb|EIN10247.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 329
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 8 DRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
D S+ Q+ +++++ + S GFGF+ + EDA AI L+ + NGR I V+ S
Sbjct: 93 DEFSRFGQVEKVTIVYDQRSGRSRGFGFIKMATVEDATKAIENLNGVDLNGRRIRVDYS 151
>gi|126660986|ref|ZP_01732073.1| RNA-binding region RNP-1 [Cyanothece sp. CCY0110]
gi|126617726|gb|EAZ88508.1| RNA-binding region RNP-1 [Cyanothece sp. CCY0110]
Length = 81
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ ++ +E+ AI TLD EW GR + V +++
Sbjct: 43 GFAFVEMNTEEEESKAIETLDGAEWMGRSMKVNQARP 79
>gi|373459057|ref|ZP_09550824.1| RNP-1 like RNA-binding protein [Caldithrix abyssi DSM 13497]
gi|371720721|gb|EHO42492.1| RNP-1 like RNA-binding protein [Caldithrix abyssi DSM 13497]
Length = 97
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF++++ +E+A AI ++ TE GR + V K++
Sbjct: 43 GFGFVTMESEEEAQNAIDNINNTELGGRTLVVNKARP 79
>gi|367020484|ref|XP_003659527.1| hypothetical protein MYCTH_2296694 [Myceliophthora thermophila
ATCC 42464]
gi|347006794|gb|AEO54282.1| hypothetical protein MYCTH_2296694 [Myceliophthora thermophila
ATCC 42464]
Length = 153
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
S GFGF+ ++DA AI ++ E++GR I V+K+ T
Sbjct: 42 SRGFGFVRYINEDDAQKAITAMNNVEFDGRQIRVDKASDT 81
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ + NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQ 267
>gi|427706332|ref|YP_007048709.1| RNP-1 like RNA-binding protein [Nostoc sp. PCC 7107]
gi|427358837|gb|AFY41559.1| RNP-1 like RNA-binding protein [Nostoc sp. PCC 7107]
Length = 110
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ ++ + AAI LD EW GR + V K+K
Sbjct: 41 PRGFAFVEMETESQETAAIEALDGAEWMGRDLKVNKAKP 79
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 21 LLSKSLNRDS----HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
++S SL +D+ GFGF++ + EDA A+ L+E++ NG ++V +++
Sbjct: 245 IVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYVGRAQ 295
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E G++I V +++
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEIGGKVIFVGRAQ 267
>gi|167630741|ref|YP_001681240.1| RNA binding protein [Heliobacterium modesticaldum Ice1]
gi|167593481|gb|ABZ85229.1| RNA binding protein [Heliobacterium modesticaldum Ice1]
Length = 86
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + RDEDA+ + ++ E+ GR++ V ++K
Sbjct: 45 SRGFGFVEV-RDEDAERMVEAMNGAEYEGRMLTVNEAKP 82
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 27/38 (71%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S ++ EDA+ A+ ++ + NG+++ V +++
Sbjct: 230 SKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQ 267
>gi|326437755|gb|EGD83325.1| hypothetical protein PTSG_12099 [Salpingoeca sp. ATCC 50818]
Length = 741
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 29 DSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+S FGF++ R +DADAA L+ +E +GR I V+ S +
Sbjct: 683 ESRRFGFITFKRQDDADAARDKLNGSELDGRSIRVDYSAT 722
>gi|238231787|ref|NP_001154080.1| RNA-binding protein 4B [Oncorhynchus mykiss]
gi|225703906|gb|ACO07799.1| RNA-binding protein 4B [Oncorhynchus mykiss]
Length = 165
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
F F+ +D ++A AI+ LD E+ G+ IHV+ SKS
Sbjct: 112 FAFVHMDNSDEALDAIKGLDNIEFQGKRIHVQISKS 147
>gi|428308134|ref|YP_007144959.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
gi|428249669|gb|AFZ15449.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
Length = 113
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 18 RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
R++L + GF F+ + ++ +AAI LD EW GR + V K+K
Sbjct: 29 RVNLPNDRETGRPRGFAFVEMQTEDQENAAIEALDGAEWMGRDLKVNKAKP 79
>gi|365877739|ref|ZP_09417234.1| rnp-1 like RNA-binding protein [Elizabethkingia anophelis Ag1]
gi|442589492|ref|ZP_21008300.1| RRM domain-containing RNA-binding protein [Elizabethkingia
anophelis R26]
gi|365754452|gb|EHM96396.1| rnp-1 like RNA-binding protein [Elizabethkingia anophelis Ag1]
gi|442561102|gb|ELR78329.1| RRM domain-containing RNA-binding protein [Elizabethkingia
anophelis R26]
Length = 86
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 21 LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
++ +S + DS G+G++ + ++A+AAIR L+ T +G I V K+
Sbjct: 32 IIKESYSGDSLGYGYVLMPNIQEAEAAIRKLNGTSLDGHSIFVSKA 77
>gi|209527224|ref|ZP_03275736.1| RNP-1 like RNA-binding protein [Arthrospira maxima CS-328]
gi|376003288|ref|ZP_09781101.1| Glycine-rich RNA-binding protein, rbp-like [Arthrospira sp. PCC
8005]
gi|209492382|gb|EDZ92725.1| RNP-1 like RNA-binding protein [Arthrospira maxima CS-328]
gi|375328318|emb|CCE16854.1| Glycine-rich RNA-binding protein, rbp-like [Arthrospira sp. PCC
8005]
Length = 93
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + +++ AI LD EW GR + V K++
Sbjct: 41 SRGFGFVEMVNEDEETKAIEALDGAEWMGRSLKVNKARP 79
>gi|158516903|gb|ABW70168.1| putative glycine-rich RNA-binding protein 2 [Bambusa oldhamii]
Length = 162
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
S GFGF+S +DA A+ ++D E GR IHV
Sbjct: 77 SRGFGFVSFSNGDDAKNAMSSMDGQELEGRNIHVN 111
>gi|402225283|gb|EJU05344.1| polyadenylate binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 716
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 20 SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+++ K +S GFGF++ + EDA A+ LD E +G+ + V +++
Sbjct: 284 AVIQKDEEGNSKGFGFVNFENHEDAQRAVEELDNKEIHGKPVFVGRAQ 331
>gi|297842099|ref|XP_002888931.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297334772|gb|EFH65190.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 181
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
RD + +L+ ++L+ + GF FL + +E+A AI+ + +GR+I VE++
Sbjct: 94 RDTFEQFGKLIHMNLVMDKVANRPRGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEA 153
Query: 67 KS 68
K+
Sbjct: 154 KT 155
>gi|297804134|ref|XP_002869951.1| hypothetical protein ARALYDRAFT_492869 [Arabidopsis lyrata subsp.
lyrata]
gi|297315787|gb|EFH46210.1| hypothetical protein ARALYDRAFT_492869 [Arabidopsis lyrata subsp.
lyrata]
Length = 152
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S G+ F+ +DA AI T+D +NGR+I+++ +K
Sbjct: 80 SKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAKP 118
>gi|47086959|ref|NP_998482.1| uncharacterized protein LOC406277 [Danio rerio]
gi|45595715|gb|AAH67153.1| Zgc:56141 [Danio rerio]
Length = 341
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
F F+ ++ ++A AI+ LD TE+ G+ IHV+ SKS
Sbjct: 112 FAFVHMNNSDEAMDAIKGLDNTEFQGKRIHVQISKS 147
>gi|389748929|gb|EIM90106.1| polyadenylate binding protein [Stereum hirsutum FP-91666 SS1]
Length = 682
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF++ + E A A+ TL +T++NG+ + V +++
Sbjct: 274 SKGFGFVNFENHEQAAKAVDTLHDTDFNGKKLFVSRAQ 311
>gi|345564220|gb|EGX47200.1| hypothetical protein AOL_s00097g39 [Arthrobotrys oligospora ATCC
24927]
Length = 333
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 32/53 (60%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
++++ +++ ++S GFGF++ + + ADAA L + GR + +EK++
Sbjct: 102 EIIKCNIMVDPHTKESRGFGFVNFAQSDQADAAKDALQGEVYEGRTLSIEKAR 154
>gi|452987975|gb|EME87730.1| hypothetical protein MYCFIDRAFT_120538, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 179
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
N S GFGF+ +DAD AIR LD+ + GR + V+
Sbjct: 39 NGRSKGFGFIEFANRDDADRAIRELDQKVFEGRRMSVQ 76
>gi|452002034|gb|EMD94493.1| hypothetical protein COCHEDRAFT_1131167 [Cochliobolus
heterostrophus C5]
Length = 125
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 27/37 (72%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ ++ +ADAA++ ++ E++GR I V+K+
Sbjct: 42 SRGFGFVRYAQETEADAAMQAMNNEEFDGRRIRVDKA 78
>gi|358331785|dbj|GAA50546.1| serine/arginine-rich splicing factor 2 [Clonorchis sinensis]
Length = 340
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 29 DSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+S GF F+ D +AD+AIR +D +GR I V+++K
Sbjct: 54 ESRGFAFVRYPTDREADSAIREMDGRRIDGREIRVQRAK 92
>gi|321260943|ref|XP_003195191.1| glycine-rich RNA binding protein [Cryptococcus gattii WM276]
gi|317461664|gb|ADV23404.1| Glycine-rich RNA binding protein, putative [Cryptococcus gattii
WM276]
Length = 177
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF++ ++A+AAI ++E E +GR + V + S
Sbjct: 44 SRGFGFVTYGSPQEAEAAIAAMNEQELDGRRVRVNMANS 82
>gi|58269652|ref|XP_571982.1| glycine-rich RNA binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228218|gb|AAW44675.1| glycine-rich RNA binding protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 182
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF++ ++A+AAI ++E E +GR + V + S
Sbjct: 44 SRGFGFVTYGSPQEAEAAIAAMNEQELDGRRVRVNMANS 82
>gi|75908205|ref|YP_322501.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
gi|75701930|gb|ABA21606.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
Length = 109
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ ++ + AAI LD EW GR + V K+K
Sbjct: 41 PRGFAFVEMETEAQETAAIEALDGAEWMGRDLKVNKAKP 79
>gi|74199920|dbj|BAE20776.1| unnamed protein product [Mus musculus]
Length = 266
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+S +R EDA A+ ++ E NG+ I+V ++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRA 266
>gi|307179084|gb|EFN67556.1| RNA-binding protein 14 [Camponotus floridanus]
Length = 435
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+GF+ + R+EDA AAI+ L + + G I+VE+S
Sbjct: 64 YGFVHMAREEDAAAAIKALHNSNFKGATINVEQS 97
>gi|254432068|ref|ZP_05045771.1| RNA-binding protein RbpD [Cyanobium sp. PCC 7001]
gi|197626521|gb|EDY39080.1| RNA-binding protein RbpD [Cyanobium sp. PCC 7001]
Length = 119
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 22 LSKSLNRDS---HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S L+R++ GF F+ L D D AI L + EW GR+I V K+
Sbjct: 30 CSLPLDRETGRKRGFAFVELANDADEQKAIDDLQDVEWMGRMIRVNKA 77
>gi|296083731|emb|CBI23720.3| unnamed protein product [Vitis vinifera]
Length = 283
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 27 NRD---SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
NRD S GF F+++ ED +A I LD +E+ GR + V S
Sbjct: 145 NRDTGRSRGFAFVTMSSVEDCNAVIENLDGSEYGGRTLRVNFS 187
>gi|423067018|ref|ZP_17055808.1| RNP-1 like RNA-binding protein [Arthrospira platensis C1]
gi|406711304|gb|EKD06505.1| RNP-1 like RNA-binding protein [Arthrospira platensis C1]
Length = 86
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + +++ AI LD EW GR + V K++
Sbjct: 34 SRGFGFVEMVNEDEETKAIEALDGAEWMGRSLKVNKARP 72
>gi|332710459|ref|ZP_08430406.1| RRM domain RNA-binding protein [Moorea producens 3L]
gi|332350790|gb|EGJ30383.1| RRM domain RNA-binding protein [Moorea producens 3L]
Length = 93
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ + + D+AI +LD EW GR I V K++
Sbjct: 43 GFAFVEMTESDQEDSAIESLDGAEWMGRRIRVNKARP 79
>gi|220903771|ref|YP_002479083.1| RNP-1 like RNA-binding protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219868070|gb|ACL48405.1| RNP-1 like RNA-binding protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 88
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
Q+L ++L+S + GFGF+ ++ D+DA AI LD E +GR + V K++
Sbjct: 28 QVLSVNLISDRETGRARGFGFVEME-DDDAANAISALDGKEVDGRSLRVNKAEP 80
>gi|197632059|gb|ACH70753.1| zgc:56141-like [Salmo salar]
gi|209155072|gb|ACI33768.1| RNA-binding protein 4B [Salmo salar]
Length = 347
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
F F+ +D ++A AI+ LD E+ G+ IHV+ SKS
Sbjct: 112 FAFVHMDNSDEALDAIKGLDNVEFQGKRIHVQISKS 147
>gi|430813346|emb|CCJ29316.1| unnamed protein product [Pneumocystis jirovecii]
Length = 229
Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 15 QLLRLSL-LSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+++R+ L ++L+ GFG++ + DA AI +D++E GRI+HV ++++
Sbjct: 94 EIVRVELPRDENLDEPHQGFGYVEFKEEGDAWDAIDNMDQSEAFGRILHVTRARA 148
>gi|75906353|ref|YP_320649.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
gi|75700078|gb|ABA19754.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
Length = 103
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ + D + AAI LD EW GR + V K+K
Sbjct: 43 GFAFVEMGSDAEETAAIEGLDGAEWMGRDLKVNKAKP 79
>gi|354605413|ref|ZP_09023401.1| hypothetical protein HMPREF9450_02316 [Alistipes indistinctus YIT
12060]
gi|353346955|gb|EHB91233.1| hypothetical protein HMPREF9450_02316 [Alistipes indistinctus YIT
12060]
Length = 109
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + D + AI L++TE+ G++I V ++
Sbjct: 41 SRGFGFVEMANDAEGQQAIDALNDTEFEGKVIGVNVARP 79
>gi|300176496|emb|CBK24161.2| unnamed protein product [Blastocystis hominis]
Length = 562
Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 21 LLSKSLNRD-----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65
++S + RD S GFGF+S D + AD AI+ +D E +++ V+K
Sbjct: 326 IVSTKIYRDRKTGKSRGFGFVSFDNVDSADVAIQKMDGYEIESKVLQVQK 375
>gi|17229803|ref|NP_486351.1| RNA-binding protein [Nostoc sp. PCC 7120]
gi|81859085|sp|Q9WX39.3|RBPF_NOSS1 RecName: Full=Putative RNA-binding protein RbpF
gi|4850345|dbj|BAA77713.1| RNA binding protein [Anabaena variabilis]
gi|17131403|dbj|BAB74010.1| RNA-binding protein [Nostoc sp. PCC 7120]
Length = 105
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ + D + AAI LD EW GR + V K+K
Sbjct: 43 GFAFVEMGSDAEETAAIEGLDGAEWMGRDLKVNKAKP 79
>gi|332020797|gb|EGI61195.1| RNA-binding protein 14 [Acromyrmex echinatior]
Length = 383
Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+GF+ + R+EDA AAI+ L + + G I+VE+S
Sbjct: 56 YGFVHMAREEDAAAAIKALHNSNFKGATINVEQS 89
>gi|88807089|ref|ZP_01122601.1| RNA-binding region RNP-1 (RNA recognition motif) [Synechococcus
sp. WH 7805]
gi|88788303|gb|EAR19458.1| RNA-binding region RNP-1 (RNA recognition motif) [Synechococcus
sp. WH 7805]
Length = 146
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
GFGF ++D ++ ADA I + ++NG ++ VE+S+
Sbjct: 45 GFGFANIDDEKVADAVIEQFNGKDFNGNVLRVERSE 80
>gi|432937500|ref|XP_004082430.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Oryzias
latipes]
Length = 302
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
GFGF+ + EDA AAI ++E+E GR I V +K
Sbjct: 48 GFGFIEFELAEDAAAAIDNMNESELFGRTIRVNIAK 83
>gi|17232175|ref|NP_488723.1| RNA-binding protein [Nostoc sp. PCC 7120]
gi|6274493|gb|AAF06670.1|AF196328_2 RbpD [Nostoc sp. PCC 7120]
gi|1064777|dbj|BAA08402.1| RNA-binding protein [Anabaena variabilis]
gi|17133820|dbj|BAB76382.1| RNA-binding protein [Nostoc sp. PCC 7120]
Length = 110
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ ++ + AAI LD EW GR + V K+K
Sbjct: 41 PRGFAFVEMETEAQETAAIEALDGAEWMGRDLKVNKAKP 79
>gi|413934994|gb|AFW69545.1| hypothetical protein ZEAMMB73_512754 [Zea mays]
Length = 151
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65
+D SK +++ ++ + R S GF F+S+D E+A+ I+ L+ + GR I VEK
Sbjct: 80 KDYFSKHGRVVGCHVVLEPHTRVSRGFAFVSMDTVEEAERCIKYLNGSVMEGRNITVEK 138
>gi|169772913|ref|XP_001820925.1| glycine-rich RNA-binding protein 2 [Aspergillus oryzae RIB40]
gi|238490830|ref|XP_002376652.1| heterogeneous nuclear ribonucleoprotein G, putative [Aspergillus
flavus NRRL3357]
gi|83768786|dbj|BAE58923.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220697065|gb|EED53406.1| heterogeneous nuclear ribonucleoprotein G, putative [Aspergillus
flavus NRRL3357]
Length = 125
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S GFGF++ +ADAAI L+E E +GR I V
Sbjct: 44 SRGFGFVTFSAQTEADAAIGGLNEQELDGRRIRV 77
>gi|322695611|gb|EFY87416.1| peptidyl prolyl cis-trans isomerase Cyclophilin, putative
[Metarhizium acridum CQMa 102]
Length = 152
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 29 DSH-GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
DSH GF ++ + EDA AI +D++E+ G+++ V ++K+
Sbjct: 50 DSHRGFAYVEFEDPEDAKEAIDNMDQSEFFGKVLKVSQAKAP 91
>gi|357123012|ref|XP_003563207.1| PREDICTED: transformer-2 sex-determining protein-like [Brachypodium
distachyon]
Length = 241
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 28 RDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
++S GF F+++D EDA I+ L T GR+I V K+K T
Sbjct: 148 KESRGFAFVTMDNIEDARRCIKYLHRTVLEGRLISVAKAKRT 189
>gi|357483947|ref|XP_003612260.1| Scaffold attachment factor B1 [Medicago truncatula]
gi|355513595|gb|AES95218.1| Scaffold attachment factor B1 [Medicago truncatula]
Length = 303
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
SK ++ L+ + R S GF F+++D EDA+ I+ L+++ GR I VE+SK
Sbjct: 152 SKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCIKYLNQSILEGRYITVERSK 208
>gi|217071698|gb|ACJ84209.1| unknown [Medicago truncatula]
Length = 294
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWN--GRIIHVEKSKS 68
GF F+ ++ + DA+ AIR LD+TE+ GR I VE +K+
Sbjct: 36 GFAFIYMEGERDAEYAIRRLDQTEFGRKGRRIRVEWTKA 74
>gi|443328785|ref|ZP_21057378.1| RRM domain-containing RNA-binding protein [Xenococcus sp. PCC
7305]
gi|442791521|gb|ELS01015.1| RRM domain-containing RNA-binding protein [Xenococcus sp. PCC
7305]
Length = 92
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
GFGF+ L+ +AAI LD EW GR + V K+
Sbjct: 43 GFGFVRLETLTQEEAAIAALDGAEWMGRTLKVNKA 77
>gi|33863352|ref|NP_894912.1| RNA-binding protein RbpD [Prochlorococcus marinus str. MIT 9313]
gi|33640801|emb|CAE21256.1| RNA-binding protein RbpD [Prochlorococcus marinus str. MIT 9313]
Length = 111
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 15 QLLRLSLLSKSLNRDS---HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
Q + S L+R++ GF F+ + D D AI L + EW GR+I V K+
Sbjct: 23 QYGEVKTCSLPLDRETGRKRGFAFVEMTNDADEQKAIDDLQDVEWMGRMIRVNKA 77
>gi|357111564|ref|XP_003557582.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 354
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGR 59
S GFGF+S EDA+AAI+ +D E +GR
Sbjct: 265 SRGFGFVSFQTLEDANAAIQAMDGVELDGR 294
>gi|298492825|ref|YP_003723002.1| RNP-1 like RNA-binding protein ['Nostoc azollae' 0708]
gi|298234743|gb|ADI65879.1| RNP-1 like RNA-binding protein ['Nostoc azollae' 0708]
Length = 101
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ ++ ++ AAI LD EW GR + V K+K
Sbjct: 42 RGFAFVEMETEDQETAAIEALDGAEWMGRDLKVNKAKP 79
>gi|259150114|emb|CAY86917.1| Nop4p [Saccharomyces cerevisiae EC1118]
Length = 685
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 33/55 (60%)
Query: 13 TYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+ ++ +++ K N+ + GFGF+S ++D A+ +T++NG I+ V+ +K
Sbjct: 48 NFAPIKHAVVVKDTNKRARGFGFVSFAVEDDIKEALAKARKTKFNGHILRVDIAK 102
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF++ EDA A+ ++ E NG+II+V +++
Sbjct: 218 LSVRVMRDEKGRSRGFGFVNYAHHEDAQKAVDEMNGKEMNGKIIYVGRAQ 267
>gi|427710388|ref|YP_007052765.1| RNP-1 like RNA-binding protein [Nostoc sp. PCC 7107]
gi|427362893|gb|AFY45615.1| RNP-1 like RNA-binding protein [Nostoc sp. PCC 7107]
Length = 106
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ + D + AAI LD EW GR + V K+K
Sbjct: 43 GFAFVEMSSDAEETAAIDALDGAEWMGRDLKVNKAKP 79
>gi|226533870|gb|ACO71288.1| cp31BHv [Triticum aestivum]
Length = 170
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S GFGF+++ ED D+AI LD E +GR + V
Sbjct: 137 SRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 170
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+++ E+AD AI T + + +GR+++V ++
Sbjct: 43 SRGFGFVTMSTIEEADKAIETFNRYDISGRLLNVNRA 79
>gi|221066816|ref|ZP_03542921.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|220711839|gb|EED67207.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
Length = 83
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 3 GKASRDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIH 62
G+A R S +++ ++S S GFGF+ + E A AI+TL++ GR +
Sbjct: 16 GEALRAHFSGCGEVISADVISDRETGRSRGFGFVEMSTPEQAQKAIQTLNDQPLGGRAVG 75
Query: 63 V 63
V
Sbjct: 76 V 76
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 27/38 (71%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S ++ EDA+ A+ ++ + NG+++ V +++
Sbjct: 236 SKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQ 273
>gi|302762759|ref|XP_002964801.1| hypothetical protein SELMODRAFT_406315 [Selaginella
moellendorffii]
gi|300167034|gb|EFJ33639.1| hypothetical protein SELMODRAFT_406315 [Selaginella
moellendorffii]
Length = 127
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF++ R+++A A+ ++D ++ GR I V+ +K+
Sbjct: 60 SKGFGFVTFKREDEAKEALESMDGKDFAGRSIRVDYAKT 98
>gi|38541222|gb|AAH62832.1| Pabpc1a protein, partial [Danio rerio]
Length = 327
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ ++V +++
Sbjct: 230 SKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQ 267
>gi|422295561|gb|EKU22860.1| glycine-rich rna-binding protein 4 [Nannochloropsis gaditana
CCMP526]
Length = 186
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ ++ +ADAAI +D E +GR + V ++
Sbjct: 70 SRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARP 108
>gi|357465131|ref|XP_003602847.1| Multiple RNA-binding domain-containing protein [Medicago
truncatula]
gi|355491895|gb|AES73098.1| Multiple RNA-binding domain-containing protein [Medicago
truncatula]
Length = 290
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 17 LRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
+ LS+ +K+ NR G F+ + E+A A+ +L E++GRII+++
Sbjct: 118 VELSMYNKNRNR---GLAFVEMGSPEEASEALNSLQSYEFDGRIINIQ 162
>gi|50543120|ref|XP_499726.1| YALI0A03509p [Yarrowia lipolytica]
gi|49645591|emb|CAG83649.1| YALI0A03509p [Yarrowia lipolytica CLIB122]
Length = 701
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 33/58 (56%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S+ + + +++ + ++S GFGF+S +EDA A+ + + G+I+ +E +K
Sbjct: 35 SQDFPVKHAVVVTNAATKESKGFGFVSFTTEEDAAEALLKCRKQKLKGKILQIEFAKP 92
>gi|430745770|ref|YP_007204899.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430017490|gb|AGA29204.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 133
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ +D D +A AAI L + E GR + V ++K
Sbjct: 44 SKGFGFVEMDSDAEAQAAIDGLHDQEHGGRRLTVNEAKP 82
>gi|225433269|ref|XP_002285469.1| PREDICTED: uncharacterized protein LOC100261382 [Vitis vinifera]
Length = 751
Score = 35.4 bits (80), Expect = 4.6, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 27 NRD---SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
NRD S GF F+++ ED +A I LD +E+ GR + V S
Sbjct: 145 NRDTGRSRGFAFVTMSSVEDCNAVIENLDGSEYGGRTLRVNFS 187
>gi|430741539|ref|YP_007200668.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430013259|gb|AGA24973.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 119
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 21 LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++ + NR S GFGF+ +D D A AAI+ L+ + +GR + V ++K
Sbjct: 35 IVDRDTNR-SKGFGFVEMDTDAQAQAAIQGLNGHDHDGRNLTVNEAKP 81
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 35.4 bits (80), Expect = 4.7, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 21 LLSKSLNRDSHG----FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+ S L +D+ G FGF++ + DA A+ L+ET++ G+ +HV +++
Sbjct: 249 ITSAHLEKDNEGKLRGFGFVNYENHNDAAKAVEELNETDFKGQTLHVGRAQ 299
>gi|212704871|ref|ZP_03312999.1| hypothetical protein DESPIG_02938 [Desulfovibrio piger ATCC
29098]
gi|212671713|gb|EEB32196.1| hypothetical protein DESPIG_02938 [Desulfovibrio piger ATCC
29098]
Length = 88
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++L + L+S + GFGF+ ++ D +A AAI LD + GR + V ++K
Sbjct: 28 KVLSVKLVSDRETGRARGFGFVEME-DGEAQAAIEALDNYSFGGRTLRVNEAKP 80
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 35.4 bits (80), Expect = 4.7, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ + NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQ 267
>gi|298492453|ref|YP_003722630.1| RNP-1 like RNA-binding protein ['Nostoc azollae' 0708]
gi|298234371|gb|ADI65507.1| RNP-1 like RNA-binding protein ['Nostoc azollae' 0708]
Length = 102
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + + + AI LD EW GR + V K+K
Sbjct: 43 GFGFVEMGTEAEETTAIEALDGAEWMGRDLKVNKAKP 79
>gi|451853629|gb|EMD66922.1| hypothetical protein COCSADRAFT_168179 [Cochliobolus sativus
ND90Pr]
Length = 159
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 27/37 (72%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ ++ +ADAA++ ++ E++GR I V+K+
Sbjct: 42 SRGFGFVRYAQETEADAAMQAMNNEEFDGRRIRVDKA 78
>gi|399931801|gb|AFP57450.1| RNA-binding glycine-rich protein [Nicotiana goodspeedii]
Length = 144
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF++ DE A+ AI+ +D E GR I V ++
Sbjct: 78 SRGFGFVNFSDDESANEAIKAMDGQELQGRNIRVNIAQ 115
>gi|78356222|ref|YP_387671.1| RNP-1 like RNA-binding protein [Desulfovibrio alaskensis G20]
gi|78218627|gb|ABB37976.1| RNP-1 like RNA-binding protein [Desulfovibrio alaskensis G20]
Length = 114
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + D +A+AAI L+ E GR I V +++
Sbjct: 41 SKGFGFVEMAEDSEANAAIEALNGREMGGRSITVNEARP 79
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 35.4 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 20 SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+++ K S GFGF++ E A AA+ L +TE NG+ + V +++
Sbjct: 266 AVVQKDEEGKSKGFGFVNFKDHESAQAAVDALHDTELNGKKLFVTRAQ 313
>gi|282896133|ref|ZP_06304159.1| RNA-binding region protein RNP-1 [Raphidiopsis brookii D9]
gi|281199051|gb|EFA73926.1| RNA-binding region protein RNP-1 [Raphidiopsis brookii D9]
Length = 98
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ ++ + AAI LD EW GR + V K+K
Sbjct: 43 GFAFVEMNSEAQETAAIEALDGAEWMGRDLKVNKAKP 79
>gi|399931807|gb|AFP57453.1| RNA-binding glycine-rich protein [Nicotiana rustica]
Length = 144
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S GFGF++ DE A+ AI+ +D E GR I V
Sbjct: 78 SRGFGFVNFSDDESANEAIKAMDGQELQGRNIRV 111
>gi|399931799|gb|AFP57449.1| RNA-binding glycine-rich protein [Nicotiana glauca]
Length = 144
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF++ DE A+ AI+ +D E GR I V ++
Sbjct: 78 SRGFGFVNFSDDESANEAIKAMDGQELQGRNIRVSIAQ 115
>gi|399931797|gb|AFP57448.1| RNA-binding glycine-rich protein [Nicotiana clevelandii]
Length = 144
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S GFGF++ DE A+ AI+ +D E GR I V
Sbjct: 78 SRGFGFVNFSDDESANEAIKAMDGQELQGRNIRV 111
>gi|307151256|ref|YP_003886640.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7822]
gi|306981484|gb|ADN13365.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7822]
Length = 97
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
GF F+ ++ D+AI LD EW GR + V K+K
Sbjct: 43 GFAFVEMENTSQEDSAIAELDRAEWMGRQLKVNKAK 78
>gi|296421441|ref|XP_002840273.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636488|emb|CAZ84464.1| unnamed protein product [Tuber melanosporum]
Length = 91
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ DE+A AA+ +++ E++GR I V+K+
Sbjct: 42 SRGFGFVRYSSDEEATAAMDNMNDVEFDGRRIRVDKA 78
>gi|374314656|ref|YP_005061084.1| RRM domain-containing RNA-binding protein [Sphaerochaeta
pleomorpha str. Grapes]
gi|359350300|gb|AEV28074.1| RRM domain-containing RNA-binding protein [Sphaerochaeta
pleomorpha str. Grapes]
Length = 92
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S+ +L +++ R GFGF+ ++ + ADAAI LD E +GR + V ++
Sbjct: 24 SQYGNVLSATIIMDRETRRPKGFGFVEMEENSAADAAISQLDGKEIDGRNLRVNEA 79
>gi|344228406|gb|EGV60292.1| hypothetical protein CANTEDRAFT_136776 [Candida tenuis ATCC 10573]
Length = 647
Score = 35.0 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 20 SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S L K L S GFGF++ D DA A+ L+ E G+ I+V +++
Sbjct: 261 SYLEKDLEGKSKGFGFVNFDNHNDAVKAVDELNNKEIAGQPIYVGRAQ 308
>gi|302756609|ref|XP_002961728.1| hypothetical protein SELMODRAFT_140819 [Selaginella
moellendorffii]
gi|300170387|gb|EFJ36988.1| hypothetical protein SELMODRAFT_140819 [Selaginella
moellendorffii]
Length = 130
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF++ + D +A AA++ +D E GR I V+ +
Sbjct: 50 SRGFGFVTFENDNEAKAAVQGMDGHELGGRSIRVDYA 86
>gi|427796305|gb|JAA63604.1| Putative alternative splicing factor srp20/9g8 rrm superfamily,
partial [Rhipicephalus pulchellus]
Length = 188
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 28 RDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
++ GF FL D D DAD AIR ++ NG + VE S+
Sbjct: 41 QNPPGFAFLEFDDDRDADEAIRNMNGVVLNGSRLRVEYSR 80
>gi|336384228|gb|EGO25376.1| hypothetical protein SERLADRAFT_448355 [Serpula lacrymans var.
lacrymans S7.9]
Length = 731
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
NR+S GF+S + +DA+ A+R D +WNG ++ V SK+
Sbjct: 240 NRNSGLSGFVSFMKRKDAENALREFDGYDWNGSVLRVGWSKAV 282
>gi|344302325|gb|EGW32630.1| hypothetical protein SPAPADRAFT_61691 [Spathaspora passalidarum
NRRL Y-27907]
Length = 291
Score = 35.0 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
GF F+ D +EDA A+ TL+++E++G+ + VE +K
Sbjct: 50 GFAFVRFDNEEDATRAVETLNDSEFDGQRLLVEYAK 85
>gi|256839767|ref|ZP_05545276.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256738697|gb|EEU52022.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 123
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ L DE A AI L++ ++G++I++ +++
Sbjct: 41 SRGFGFVELSDDELAKKAIEELNQASYDGKVINITEARP 79
>gi|150007582|ref|YP_001302325.1| RNA-binding protein rbpA [Parabacteroides distasonis ATCC 8503]
gi|255013892|ref|ZP_05286018.1| putative RNA-binding protein rbpA [Bacteroides sp. 2_1_7]
gi|298375526|ref|ZP_06985483.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides
sp. 3_1_19]
gi|410101874|ref|ZP_11296802.1| hypothetical protein HMPREF0999_00574 [Parabacteroides sp. D25]
gi|423331931|ref|ZP_17309715.1| hypothetical protein HMPREF1075_01728 [Parabacteroides distasonis
CL03T12C09]
gi|149936006|gb|ABR42703.1| putative RNA-binding protein rbpA [Parabacteroides distasonis
ATCC 8503]
gi|298268026|gb|EFI09682.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides
sp. 3_1_19]
gi|409229772|gb|EKN22644.1| hypothetical protein HMPREF1075_01728 [Parabacteroides distasonis
CL03T12C09]
gi|409239672|gb|EKN32456.1| hypothetical protein HMPREF0999_00574 [Parabacteroides sp. D25]
Length = 123
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ L DE A AI L++ ++G++I++ +++
Sbjct: 41 SRGFGFVELSDDELAKKAIEELNQASYDGKVINITEARP 79
>gi|124022676|ref|YP_001016983.1| RNA-binding protein RbpD [Prochlorococcus marinus str. MIT 9303]
gi|123962962|gb|ABM77718.1| RNA-binding protein RbpD [Prochlorococcus marinus str. MIT 9303]
Length = 104
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 15 QLLRLSLLSKSLNRDS---HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
Q + S L+R++ GF F+ + D D AI L + EW GR+I V K+
Sbjct: 23 QYGEVKTCSLPLDRETGRKRGFAFVEMANDADEQKAIDDLQDVEWMGRMIRVNKA 77
>gi|307153774|ref|YP_003889158.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7822]
gi|306984002|gb|ADN15883.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7822]
Length = 102
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 25 SLNRDS---HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
++RD+ GFGF+ ++ D+AI LD EW G+ + V K++
Sbjct: 33 PVDRDTGRRRGFGFVEMETSAQEDSAITALDGAEWMGKQLKVNKAR 78
>gi|33861932|ref|NP_893493.1| RNA-binding protein RbpD [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
gi|33640300|emb|CAE19835.1| RNA-binding protein RbpD [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
Length = 92
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 12 KTYQLLRLSLLSKSLNRDS---HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
KTY +R + L RDS GFGF+ + + AI L + EW GR I V K++
Sbjct: 22 KTYGAVRNCTIP--LERDSGRKRGFGFVEMTSESSEKTAIDDLQDVEWMGREIRVNKAE 78
>gi|409038919|gb|EKM48719.1| hypothetical protein PHACADRAFT_266187 [Phanerochaete carnosa
HHB-10118-sp]
Length = 242
Score = 35.0 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 28 RDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
R+S GFGF++++ E+ADAA+ L+ + G+ + V K++
Sbjct: 111 RESRGFGFVTMETAEEADAAVTALNNADLMGKTMTVTKAR 150
>gi|301310455|ref|ZP_07216394.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides
sp. 20_3]
gi|423336704|ref|ZP_17314451.1| hypothetical protein HMPREF1059_00403 [Parabacteroides distasonis
CL09T03C24]
gi|300832029|gb|EFK62660.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides
sp. 20_3]
gi|409240584|gb|EKN33362.1| hypothetical protein HMPREF1059_00403 [Parabacteroides distasonis
CL09T03C24]
Length = 123
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ L DE A AI L++ ++G++I++ +++
Sbjct: 41 SRGFGFVELSDDELAKKAIEELNQASYDGKVINITEARP 79
>gi|28839776|gb|AAH47836.1| Zgc:56141 protein [Danio rerio]
gi|197247072|gb|AAI65109.1| Zgc:56141 protein [Danio rerio]
Length = 249
Score = 35.0 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
F F+ ++ ++A AI+ LD TE+ G+ IHV+ SKS
Sbjct: 184 FAFVHMNNSDEAMDAIKGLDNTEFQGKRIHVQISKS 219
>gi|399931805|gb|AFP57452.1| RNA-binding glycine-rich protein [Nicotiana repanda]
Length = 144
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S GFGF++ DE A+ AI+ +D E GR I V
Sbjct: 78 SRGFGFVNFSDDESANEAIKAMDGQELQGRNIRV 111
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 35.0 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 5 ASRDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
A RD+ SK + L +++ + N DS GFGF++ D ++A AAI+ + + +G+ ++V
Sbjct: 306 ALRDKFSKFGTITSLKIMTDN-NGDSRGFGFVNFDSADEAAAAIQEMHGSMIDGKPLYV 363
>gi|399931811|gb|AFP57455.1| RNA-binding glycine-rich protein [Nicotiana undulata]
Length = 144
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S GFGF++ DE A+ AI+ +D E GR I V
Sbjct: 78 SRGFGFVNFSDDESANEAIKAMDGQELQGRNIRV 111
>gi|282900575|ref|ZP_06308517.1| RNA-binding region protein RNP-1 [Cylindrospermopsis raciborskii
CS-505]
gi|281194375|gb|EFA69330.1| RNA-binding region protein RNP-1 [Cylindrospermopsis raciborskii
CS-505]
Length = 103
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + + + +AAI L+ EW GR + V K++
Sbjct: 41 PRGFGFVDMSSEAEENAAIDALNGAEWMGRQLKVNKARP 79
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 35.0 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 20 SLLSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
++ S L RD S GFGF++ + E+A A+ TL ++++ GR + V +++
Sbjct: 258 NVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAVDTLHDSDFKGRKLFVSRAQ 309
>gi|341888357|gb|EGT44292.1| CBN-SPN-4 protein [Caenorhabditis brenneri]
Length = 349
Score = 35.0 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
+R S GFGF++LD + + A L E+ GRII V ++ T
Sbjct: 83 DRGSKGFGFVTLDSIDSCEKARAALHESHVQGRIIEVRRATPT 125
>gi|159471227|ref|XP_001693758.1| predicted protein [Chlamydomonas reinhardtii]
gi|158283261|gb|EDP09012.1| predicted protein [Chlamydomonas reinhardtii]
Length = 86
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+ DAD AI LD+T +GR I+V SK
Sbjct: 40 SRGFGFIEFRDARDADEAIYQLDKTSIDGREINVCLSK 77
>gi|384246748|gb|EIE20237.1| hypothetical protein COCSUDRAFT_57959 [Coccomyxa subellipsoidea
C-169]
Length = 303
Score = 35.0 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 21 LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+L + NR S GFGF++ D ED + I L TE +GR I V ++
Sbjct: 53 MLDRITNR-SRGFGFVTFDTKEDMEECIAKLHATELDGRKISVTRA 97
>gi|189499100|ref|YP_001958570.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
gi|189494541|gb|ACE03089.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
Length = 90
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ + D++A AI +L +++ NGR I V ++
Sbjct: 41 SKGFGFVEMPNDDEAQNAIDSLHDSDLNGRSIKVNQA 77
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 35.0 bits (79), Expect = 5.4, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G+ I V +++
Sbjct: 240 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQ 289
>gi|427702145|ref|YP_007045367.1| RRM domain-containing RNA-binding protein [Cyanobium gracile PCC
6307]
gi|427345313|gb|AFY28026.1| RRM domain-containing RNA-binding protein [Cyanobium gracile PCC
6307]
Length = 112
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 15 QLLRLSLLSKSLNRDS---HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
Q L + L+RD+ GF F+ + D D AI L + EW GR I V K++
Sbjct: 23 QYGELRQCTLPLDRDTGRKRGFAFVEMTNDADETKAIDDLQDVEWMGRSIRVNKAEP 79
>gi|388583170|gb|EIM23472.1| RNA-binding domain-containing protein [Wallemia sebi CBS 633.66]
Length = 372
Score = 35.0 bits (79), Expect = 5.4, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 36/57 (63%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S + ++L++ ++ R+S GFGF++ ++ ++AD AI L ++ G+ I V +++
Sbjct: 91 SSSGKVLKVVIMLDPHTRESRGFGFVTFEQPQEADDAIEKLHLSQILGKTITVARAR 147
>gi|434402713|ref|YP_007145598.1| RRM domain-containing RNA-binding protein [Cylindrospermum
stagnale PCC 7417]
gi|428256968|gb|AFZ22918.1| RRM domain-containing RNA-binding protein [Cylindrospermum
stagnale PCC 7417]
Length = 103
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ +D D + +AAI LD EW GR + V K+K
Sbjct: 43 GFGFVEMDSDAEEEAAIAALDNAEWMGRSLKVNKAKP 79
>gi|434386342|ref|YP_007096953.1| RRM domain-containing RNA-binding protein [Chamaesiphon minutus
PCC 6605]
gi|428017332|gb|AFY93426.1| RRM domain-containing RNA-binding protein [Chamaesiphon minutus
PCC 6605]
Length = 95
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ + D + D AI LD EW GR + V K++
Sbjct: 43 GFAFVEMSDDANEDNAITNLDGAEWMGRSLKVNKARP 79
>gi|410906707|ref|XP_003966833.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 347
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
F F+ + ++A AI+ LD TE+ G+ IHV+ SKS
Sbjct: 112 FAFVHMSNSDEAMDAIKGLDNTEFQGKRIHVQISKS 147
>gi|348688369|gb|EGZ28183.1| hypothetical protein PHYSODRAFT_470319 [Phytophthora sojae]
Length = 120
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ + + DA AAI +DE+E G+ + V +K
Sbjct: 48 SKGFGFVEFEDEADARAAIDNMDESELFGKTLRVSIAKP 86
>gi|390941633|ref|YP_006405370.1| RRM domain-containing RNA-binding protein [Sulfurospirillum
barnesii SES-3]
gi|390194740|gb|AFL69795.1| RRM domain-containing RNA-binding protein [Sulfurospirillum
barnesii SES-3]
Length = 91
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ + D +A AAI +E E GR + V ++
Sbjct: 41 SKGFGFVEMPNDSEAKAAIEATNEKEIGGRTLKVNEA 77
>gi|330836185|ref|YP_004410826.1| RNP-1 like RNA-binding protein [Sphaerochaeta coccoides DSM
17374]
gi|329748088|gb|AEC01444.1| RNP-1 like RNA-binding protein [Sphaerochaeta coccoides DSM
17374]
Length = 91
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 26 LNRDSH---GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
++R++H GF F+ ++ D ADAAI LD E++GR + V ++
Sbjct: 36 IDRETHRPKGFAFVEMEDDGAADAAISQLDGKEFDGRNLRVNEA 79
>gi|226358689|gb|ACO51197.1| poly A binding protein, cytoplasmic 1 a [Hypophthalmichthys
nobilis]
Length = 290
Score = 35.0 bits (79), Expect = 5.6, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ ++V +++
Sbjct: 157 SKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQ 194
>gi|219880797|gb|ACL51672.1| truncated RNA binding motif protein Y-linked [Macaca mulatta]
Length = 231
Score = 35.0 bits (79), Expect = 5.6, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 21 LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LL K R S GF F++ + EDA A + ++ +G+ I VE++K
Sbjct: 38 LLIKDRTRKSRGFAFVTFENPEDAKNAAKDMNGKSLDGKAIKVEQAK 84
>gi|351712201|gb|EHB15120.1| Scaffold attachment factor B2 [Heterocephalus glaber]
Length = 923
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 35/58 (60%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
SK +++ +++ + + + +GF+++ E+A I L TE +GR+I VEK+K+
Sbjct: 443 SKYGKVVGAKVVTNARSPGARCYGFVTMSTSEEATKCISHLHRTELHGRMISVEKAKN 500
>gi|217074252|gb|ACJ85486.1| unknown [Medicago truncatula]
Length = 213
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
G+ F+++D E A AA+ + TE +GRI+ VE +K
Sbjct: 137 GYTFVTMDSGEGAQAAVDKFNATEISGRILRVEFAK 172
>gi|145218978|ref|YP_001129687.1| RNP-1 like RNA-binding protein [Chlorobium phaeovibrioides DSM
265]
gi|145205142|gb|ABP36185.1| RNP-1 like RNA-binding protein [Chlorobium phaeovibrioides DSM
265]
Length = 89
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
RD S Q+ ++++ + S GFGF+ + D +A AI ++ E E +GR I V
Sbjct: 18 RDTFSAFGQVDSANIITDKFSGRSKGFGFVDMPNDSEAREAIESMHEKELSGRTITV 74
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 35.0 bits (79), Expect = 5.8, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ + NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQ 267
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 35.0 bits (79), Expect = 5.8, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRDS----HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RDS GFGF+S ++ EDA+ A+ ++ E +G+ I V +++
Sbjct: 235 LSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQ 284
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 35.0 bits (79), Expect = 5.9, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 21 LLSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+LS + RD S GFGF++ ++ E+A A+ ++ E +GR+++V +++
Sbjct: 217 MLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVGRAQ 267
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 35.0 bits (79), Expect = 5.9, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRDS----HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RDS GFGF+S ++ EDA+ A+ ++ E +G+ I V +++
Sbjct: 218 LSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQ 267
>gi|255545842|ref|XP_002513981.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223547067|gb|EEF48564.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 305
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 17 LRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGR 59
+ LS+ +K+ NR G F+S+ E+A AI++LD E+ GR
Sbjct: 127 VELSMYNKTRNR---GLAFVSMGSPEEAATAIKSLDSYEFEGR 166
>gi|67923998|ref|ZP_00517451.1| RNA-binding region RNP-1 (RNA recognition motif) [Crocosphaera
watsonii WH 8501]
gi|416401054|ref|ZP_11687154.1| RNA-binding protein [Crocosphaera watsonii WH 0003]
gi|67854173|gb|EAM49479.1| RNA-binding region RNP-1 (RNA recognition motif) [Crocosphaera
watsonii WH 8501]
gi|357262154|gb|EHJ11338.1| RNA-binding protein [Crocosphaera watsonii WH 0003]
Length = 81
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ L+ + +AI TLD EW GR + V++++
Sbjct: 41 PRGFAFVELETKAEESSAIETLDGAEWMGRTMKVDEARP 79
>gi|381179273|ref|ZP_09888130.1| RNP-1 like RNA-binding protein [Treponema saccharophilum DSM 2985]
gi|380768849|gb|EIC02831.1| RNP-1 like RNA-binding protein [Treponema saccharophilum DSM 2985]
Length = 129
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GF F+ +D DE+A AI +D T+ +GR + V +S
Sbjct: 64 SRGFAFVEMDDDEEAARAISAVDGTDIDGRKVRVSES 100
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 35.0 bits (79), Expect = 6.0, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 21 LLSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+LS + RD S GFGF++ ++ E+A A+ ++ E +GR+++V +++
Sbjct: 217 MLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVGRAQ 267
>gi|220909892|ref|YP_002485203.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7425]
gi|219866503|gb|ACL46842.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7425]
Length = 98
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ ++ + AAI LD EW GR + V K+K
Sbjct: 43 GFAFVEMENTPEETAAIEALDGAEWMGRDLKVNKAKP 79
>gi|351723185|ref|NP_001236758.1| uncharacterized protein LOC100499841 [Glycine max]
gi|255627057|gb|ACU13873.1| unknown [Glycine max]
Length = 143
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
S GFGF++ DE A +A+ +D + NGR I V
Sbjct: 76 SRGFGFVNFSNDESASSALSAMDGKDLNGRSIRVS 110
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 35.0 bits (79), Expect = 6.1, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRDS----HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RDS GFGF+S ++ EDA+ A+ ++ E +G+ I V +++
Sbjct: 218 LSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQ 267
>gi|403368470|gb|EJY84070.1| RNA-binding protein, putative [Oxytricha trifallax]
Length = 804
Score = 35.0 bits (79), Expect = 6.1, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 12 KTYQLLRLSLLSKSLNRDSH-GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
KTY L+ L K +N SH GFGF+ E+A A + L T GR I +E +K
Sbjct: 723 KTYGALKKCRLPKKINSKSHRGFGFVEFVSSEEAKNAFKMLQHTHLYGRKIIIEWAK 779
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 35.0 bits (79), Expect = 6.2, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRDS----HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RDS GFGF+S ++ EDA+ A+ ++ E +G+ I V +++
Sbjct: 218 LSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQ 267
>gi|71659594|ref|XP_821518.1| polyadenylate-binding protein 1 [Trypanosoma cruzi strain CL
Brener]
gi|70886900|gb|EAN99667.1| polyadenylate-binding protein 1, putative [Trypanosoma cruzi]
Length = 570
Score = 35.0 bits (79), Expect = 6.2, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 12 KTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGR 59
K Y ++R + N +S GFGF+S + + A+AA+R ++ NG+
Sbjct: 333 KEYGVIRSCRVMTDANGNSRGFGFVSFENADQANAALREMNGRMLNGK 380
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 35.0 bits (79), Expect = 6.2, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF++ EDA A+ ++ E NG++I+V +++
Sbjct: 230 SRGFGFVNFAHHEDAQKAVDEMNGKELNGKVIYVGRAQ 267
>gi|345567860|gb|EGX50762.1| hypothetical protein AOL_s00054g848 [Arthrobotrys oligospora ATCC
24927]
Length = 130
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+ D++A AA +++ E++GR I V+K+
Sbjct: 42 SRGFGFVRFSNDDEATAAQEAMNDAEFDGRRIRVDKA 78
>gi|299751777|ref|XP_001830476.2| glycine-rich RNA binding protein [Coprinopsis cinerea
okayama7#130]
gi|298409530|gb|EAU91356.2| glycine-rich RNA binding protein [Coprinopsis cinerea
okayama7#130]
Length = 142
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S GFGF++ E+ADAAI +L + E +GR I V
Sbjct: 43 SRGFGFVTYSATEEADAAIASLHDQELDGRRIKV 76
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 35.0 bits (79), Expect = 6.3, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRDS----HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RDS GFGF+S ++ EDA+ A+ ++ E +G+ I V +++
Sbjct: 235 LSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQ 284
>gi|428203801|ref|YP_007082390.1| RRM domain-containing RNA-binding protein [Pleurocapsa sp. PCC
7327]
gi|427981233|gb|AFY78833.1| RRM domain-containing RNA-binding protein [Pleurocapsa sp. PCC
7327]
Length = 99
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ +D + + AAI+ LD +W GR + V K++
Sbjct: 42 RGFAFVEMDTEAEETAAIQALDGAKWIGRSLKVSKARP 79
>gi|171680237|ref|XP_001905064.1| hypothetical protein [Podospora anserina S mat+]
gi|170939745|emb|CAP64971.1| unnamed protein product [Podospora anserina S mat+]
Length = 176
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
S GFGF+ +DA AI + E++GR I V+K+ T
Sbjct: 42 SRGFGFVRYTNPDDAQKAISAMKNIEFDGRQIRVDKASDT 81
>gi|357510891|ref|XP_003625734.1| Polyadenylate binding protein [Medicago truncatula]
gi|355500749|gb|AES81952.1| Polyadenylate binding protein [Medicago truncatula]
Length = 613
Score = 35.0 bits (79), Expect = 6.4, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
R++ S +++ L++ +K N S GFGF++ D EDA A+ T++ + +I++V ++
Sbjct: 206 REKFSSFGKIISLAV-AKDSNGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARA 264
Query: 67 K 67
+
Sbjct: 265 Q 265
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 34.7 bits (78), Expect = 6.5, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRDS----HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RDS GFGF+S ++ EDA+ A+ ++ E +G+ I V +++
Sbjct: 147 LSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQ 196
>gi|388516667|gb|AFK46395.1| unknown [Lotus japonicus]
Length = 268
Score = 34.7 bits (78), Expect = 6.5, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 21 LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
L+ + R S GF F+++D EDA+ ++ L+++ GR I VE+S+
Sbjct: 122 LVVEPRTRISRGFAFITMDTVEDANRCVKYLNQSVLEGRYITVERSR 168
>gi|3550483|emb|CAA11893.1| cp31BHv [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 34.7 bits (78), Expect = 6.5, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S GFGF+++ ED D+AI LD E +GR + V
Sbjct: 239 SRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 272
>gi|255578005|ref|XP_002529874.1| Eukaryotic translation initiation factor 3 subunit, putative
[Ricinus communis]
gi|223530650|gb|EEF32524.1| Eukaryotic translation initiation factor 3 subunit, putative
[Ricinus communis]
Length = 307
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 15 QLLRLSLLS---KSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65
Q+ R+ LL+ LNR G GF+S EDA+ AI LD ++ I+HVEK
Sbjct: 242 QVSRVFLLTDRHTGLNR---GSGFVSFVNKEDAERAINKLDGYGYDNLILHVEK 292
>gi|428220065|ref|YP_007083537.1| RNP-1 like RNA-binding protein [Pseudanabaena sp. PCC 7367]
gi|427992408|gb|AFY72101.1| RNP-1 like RNA-binding protein [Pseudanabaena sp. PCC 7367]
Length = 83
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ ++ + + + AI LD EW GR + V K++
Sbjct: 43 GFGFVHMEDEANEEEAISALDGAEWCGRNLKVNKARP 79
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 34.7 bits (78), Expect = 6.7, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 5/52 (9%)
Query: 21 LLSKSLNRD-----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+ S S++RD S GFGF++ + E A AA+ L++ E+ G+ ++V +++
Sbjct: 262 ITSASISRDGETGKSRGFGFVNFVKHESAAAAVEELNDKEYKGQKLYVGRAQ 313
>gi|148242178|ref|YP_001227335.1| RNA-binding protein [Synechococcus sp. RCC307]
gi|147850488|emb|CAK27982.1| RNA-binding protein, RRM domain [Synechococcus sp. RCC307]
Length = 84
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 22 LSKSLNRDS---HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S L+R++ GFGF+ + + D AI L + EW GR I V K++
Sbjct: 30 CSLPLDRETGRKRGFGFVDMASEADEQKAIDDLQDVEWMGRYIRVNKAEP 79
>gi|449440159|ref|XP_004137852.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
gi|449521207|ref|XP_004167621.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
Length = 640
Score = 34.7 bits (78), Expect = 6.8, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 31/47 (65%)
Query: 21 LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
++S+ N S GFGF++ + +DA A+ TL+ ++ ++I++ +++
Sbjct: 223 IISRDENGVSRGFGFINFENSDDAKRALETLNGSQLGSKVIYIARAQ 269
>gi|427415565|ref|ZP_18905748.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
gi|425758278|gb|EKU99130.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
Length = 84
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+S+ + + I LD +EW GR + V K+K
Sbjct: 43 GFGFVSMGAETEESDIIEALDGSEWMGRELKVNKAKP 79
>gi|428214099|ref|YP_007087243.1| RRM domain-containing RNA-binding protein [Oscillatoria acuminata
PCC 6304]
gi|428002480|gb|AFY83323.1| RRM domain-containing RNA-binding protein [Oscillatoria acuminata
PCC 6304]
Length = 104
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ + + + AAI LD EW GR + V K+K
Sbjct: 43 GFAFVEMKSETEETAAIEALDGAEWMGRDMKVNKAKP 79
>gi|428175786|gb|EKX44674.1| hypothetical protein GUITHDRAFT_109452 [Guillardia theta CCMP2712]
Length = 895
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 23 SKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
SK +R S G+GF+ R +DA+ A+R L T+ +G ++ ++ S
Sbjct: 673 SKEPSRLSMGYGFVEFKRSKDANEALRKLQGTKLDGHVLQLKMS 716
>gi|414883567|tpg|DAA59581.1| TPA: hypothetical protein ZEAMMB73_267259 [Zea mays]
Length = 385
Score = 34.7 bits (78), Expect = 6.9, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGR 59
S GFGF+S EDA AA+ +LD E GR
Sbjct: 295 SRGFGFVSFSTAEDAQAALESLDGVELEGR 324
>gi|448096991|ref|XP_004198563.1| Piso0_001939 [Millerozyma farinosa CBS 7064]
gi|359379985|emb|CCE82226.1| Piso0_001939 [Millerozyma farinosa CBS 7064]
Length = 280
Score = 34.7 bits (78), Expect = 6.9, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
GF F++ + +EDA A+ TLD +E++G+ + +E ++
Sbjct: 39 GFAFVTFESEEDAKKAVETLDNSEFDGQPLQIEFAR 74
>gi|357111298|ref|XP_003557451.1| PREDICTED: uncharacterized protein LOC100823909 [Brachypodium
distachyon]
Length = 258
Score = 34.7 bits (78), Expect = 6.9, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF++ ADAAIR + E +GR I V K++
Sbjct: 47 SRGFGFVTFSEPRAADAAIREMHNGELDGRTISVNKAQ 84
>gi|50420251|ref|XP_458658.1| DEHA2D04400p [Debaryomyces hansenii CBS767]
gi|49654325|emb|CAG86797.1| DEHA2D04400p [Debaryomyces hansenii CBS767]
Length = 282
Score = 34.7 bits (78), Expect = 6.9, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
GF F++ + +EDA A+ TLD T++ G+ + +E ++
Sbjct: 39 GFAFVTFENEEDAKRAVETLDNTDFEGQPLQIEFAR 74
>gi|434406111|ref|YP_007148996.1| RRM domain-containing RNA-binding protein [Cylindrospermum
stagnale PCC 7417]
gi|428260366|gb|AFZ26316.1| RRM domain-containing RNA-binding protein [Cylindrospermum
stagnale PCC 7417]
Length = 94
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ + D D AI LD EW GR + V K+K
Sbjct: 42 RGFAFVDMMEDSQEDKAITELDGAEWMGRQLRVNKAKP 79
>gi|413918632|gb|AFW58564.1| hypothetical protein ZEAMMB73_261167 [Zea mays]
Length = 246
Score = 34.7 bits (78), Expect = 6.9, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 28 RDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65
R+S GFGF+++ ++AD I+ LD + G++I VEK
Sbjct: 161 RESRGFGFVTMAATKEADHCIKYLDCSVLQGQVIIVEK 198
>gi|294461367|gb|ADE76245.1| unknown [Picea sitchensis]
gi|294463638|gb|ADE77346.1| unknown [Picea sitchensis]
Length = 220
Score = 34.7 bits (78), Expect = 7.1, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 21 LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
L+ + R S GFGF+++ EDA+ I+ L+++ GR I VEKS+
Sbjct: 73 LVVEPRTRISRGFGFVTMGSLEDAERCIKYLNQSILEGRFITVEKSR 119
>gi|358380041|gb|EHK17720.1| hypothetical protein TRIVIDRAFT_42809 [Trichoderma virens Gv29-8]
Length = 746
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
S+ + + +++ ++S GFGF+S +DA A LD+ EW+GR I +E
Sbjct: 64 SQYFPVKHATVVIDQKTKESRGFGFVSFADADDAKDAKEALDKKEWDGRRIRIE 117
>gi|302762761|ref|XP_002964802.1| hypothetical protein SELMODRAFT_69504 [Selaginella
moellendorffii]
gi|300167035|gb|EFJ33640.1| hypothetical protein SELMODRAFT_69504 [Selaginella
moellendorffii]
Length = 94
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64
S GFGF++ + D +A AA++ +D E GR I V+
Sbjct: 35 SRGFGFVTFENDNEAKAAVQGMDGHELGGRSIRVD 69
>gi|77166221|ref|YP_344746.1| RNA-binding protein, RNP-1 [Nitrosococcus oceani ATCC 19707]
gi|254435869|ref|ZP_05049376.1| RNA-binding protein [Nitrosococcus oceani AFC27]
gi|76884535|gb|ABA59216.1| RNA-binding protein, RNP-1 [Nitrosococcus oceani ATCC 19707]
gi|207088980|gb|EDZ66252.1| RNA-binding protein [Nitrosococcus oceani AFC27]
Length = 119
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 21 LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++ K NR S GFGF+ + EDA+AAI+ + +++ GR + V +++
Sbjct: 50 IVDKFSNR-SKGFGFVEMASKEDAEAAIKEMHDSDIKGRQVVVNEARP 96
>gi|357440093|ref|XP_003590324.1| 33 kDa ribonucleoprotein [Medicago truncatula]
gi|355479372|gb|AES60575.1| 33 kDa ribonucleoprotein [Medicago truncatula]
Length = 311
Score = 34.7 bits (78), Expect = 7.2, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 16 LLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
++ + +L + S GF F+++ EDA+ AIR D T GR I V
Sbjct: 134 VVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMFDGTTVGGRAIKV 181
>gi|339522325|gb|AEJ84327.1| RNA-binding protein 4 [Capra hircus]
Length = 362
Score = 34.7 bits (78), Expect = 7.2, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +H + S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHGQLSPS 148
>gi|326527719|dbj|BAK08134.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 34.7 bits (78), Expect = 7.3, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S GFGF+++ ED D+AI LD E +GR + V
Sbjct: 239 SRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 272
Score = 34.3 bits (77), Expect = 9.2, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+++ E+AD AI T + + +GR+++V ++
Sbjct: 145 SRGFGFVTMSTIEEADKAIETFNRYDISGRLLNVNRA 181
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 34.7 bits (78), Expect = 7.4, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
LS + RD S GFGF+S ++ EDA+ A+ ++ E +G+ I V +++
Sbjct: 209 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQ 258
>gi|115476220|ref|NP_001061706.1| Os08g0385900 [Oryza sativa Japonica Group]
gi|40253470|dbj|BAD05420.1| putative transformer-SR ribonucleoprotein [Oryza sativa Japonica
Group]
gi|40253902|dbj|BAD05836.1| putative transformer-SR ribonucleoprotein [Oryza sativa Japonica
Group]
gi|113623675|dbj|BAF23620.1| Os08g0385900 [Oryza sativa Japonica Group]
gi|215697910|dbj|BAG92152.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 279
Score = 34.7 bits (78), Expect = 7.4, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 28 RDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
++S GF F+++D +DA I+ L T GR++ VEK+K T
Sbjct: 129 KESRGFAFVTMDSVDDARRCIKYLHRTVLEGRLVTVEKAKRT 170
>gi|392568536|gb|EIW61710.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 345
Score = 34.7 bits (78), Expect = 7.4, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 16 LLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+L ++ +S NR S G+GF+SL E A A+ LD+ E +GR + VE +K
Sbjct: 57 VLSAQVIMRSGNR-SAGYGFVSLTTLEAAQKAVELLDKQELDGRTVIVEVAK 107
>gi|222640483|gb|EEE68615.1| hypothetical protein OsJ_27155 [Oryza sativa Japonica Group]
Length = 271
Score = 34.7 bits (78), Expect = 7.4, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 28 RDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
++S GF F+++D +DA I+ L T GR++ VEK+K T
Sbjct: 121 KESRGFAFVTMDSVDDARRCIKYLHRTVLEGRLVTVEKAKRT 162
>gi|448111013|ref|XP_004201740.1| Piso0_001939 [Millerozyma farinosa CBS 7064]
gi|359464729|emb|CCE88434.1| Piso0_001939 [Millerozyma farinosa CBS 7064]
Length = 281
Score = 34.7 bits (78), Expect = 7.5, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
GF F++ + +EDA A+ TLD +E++G+ + +E ++
Sbjct: 39 GFAFVTFESEEDAKKAVETLDNSEFDGQPLQIEFAR 74
>gi|148240593|ref|YP_001225980.1| RNA-binding protein [Synechococcus sp. WH 7803]
gi|147849132|emb|CAK24683.1| RNA-binding protein, RRM domain [Synechococcus sp. WH 7803]
Length = 145
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
GFGF ++D ++ ADA I + E+NG + VE+S+
Sbjct: 45 GFGFANIDDEKVADAVIEQFNGKEFNGNSLRVERSE 80
>gi|328714675|ref|XP_003245425.1| PREDICTED: serine-arginine protein 55-like isoform 2
[Acyrthosiphon pisum]
Length = 309
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
+G+GF+ D DAD A+ L+ E NG + VE+++ T
Sbjct: 38 NGYGFIEFDDYRDADDAVYELNGRELNGERVSVERARGT 76
>gi|193211762|ref|YP_001997715.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
gi|193085239|gb|ACF10515.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
Length = 90
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
RD S+ Q+ ++++ + S GFGF+ + D +A AI +++ ++ GR I V ++
Sbjct: 18 RDAFSEFGQVHSANIITDKFSGRSKGFGFVDMPNDGEAREAIDAMNDKDFKGRTIKVNEA 77
>gi|116781814|gb|ABK22250.1| unknown [Picea sitchensis]
Length = 355
Score = 34.7 bits (78), Expect = 7.8, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+S + + +AA+ +D E GR I V +KS
Sbjct: 309 SRGFGFVSFSSEAEVEAAVSEMDGLEVEGRSIRVNVAKS 347
>gi|428224332|ref|YP_007108429.1| RNP-1 like RNA-binding protein [Geitlerinema sp. PCC 7407]
gi|427984233|gb|AFY65377.1| RNP-1 like RNA-binding protein [Geitlerinema sp. PCC 7407]
Length = 90
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ L D D+AI L+ EW GR + V K+K
Sbjct: 42 RGFAFVDLTDDSTEDSAIEELNGAEWMGRQLRVNKAKP 79
>gi|21672973|ref|NP_661038.1| RNA-binding protein [Chlorobium tepidum TLS]
gi|21646033|gb|AAM71380.1| RNA-binding protein [Chlorobium tepidum TLS]
Length = 90
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
RD+ S+ Q+ ++++ + S GFGF+ + + +A AI +++ ++ GR I V ++
Sbjct: 18 RDKFSEFGQVHSANIITDKFSGRSKGFGFVDMPNESEAREAIDAMNDKDFKGRTIKVNEA 77
>gi|403167507|ref|XP_003327294.2| hypothetical protein PGTG_09843 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375167061|gb|EFP82875.2| hypothetical protein PGTG_09843 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 260
Score = 34.7 bits (78), Expect = 7.9, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 3 GKASRDRESKTYQLL-------RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETE 55
G ++R ++ Y+L + L+ ++ GFGF++++ E+ADAA+ L+ +
Sbjct: 84 GISTRAEDADLYELFSKYGRVQKAQLMRDPNTKEVRGFGFVTMETCEEADAAMTALNGAD 143
Query: 56 WNGRIIHVEKSK 67
G+ + VEK++
Sbjct: 144 LFGKPLGVEKAR 155
>gi|326516784|dbj|BAJ96384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 34.7 bits (78), Expect = 7.9, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S GFGF+++ ED D+AI LD E +GR + V
Sbjct: 239 SRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 272
>gi|220905282|ref|YP_002480594.1| RNP-1 like RNA-binding protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219869581|gb|ACL49916.1| RNP-1 like RNA-binding protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 88
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 16 LLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+L + L+S + GFGF+ ++ D +AD+AI LD + GR + V ++K
Sbjct: 29 VLSVKLVSDRDTGRARGFGFVEME-DGEADSAIEALDNFSFGGRTLRVNEAKP 80
>gi|158292878|ref|XP_314164.4| AGAP005249-PA [Anopheles gambiae str. PEST]
gi|157017199|gb|EAA09490.4| AGAP005249-PA [Anopheles gambiae str. PEST]
Length = 862
Score = 34.7 bits (78), Expect = 8.0, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 15 QLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
Q++R LS + +S G+GF+ R + AD A++ L + +GR + + +S T
Sbjct: 635 QVVRSMDLSGNGRNESRGYGFIQFKRRQVADYALKNLQSVQIDGRTVELARSDRT 689
>gi|78213170|ref|YP_381949.1| RNA recognition motif-containing protein [Synechococcus sp.
CC9605]
gi|78197629|gb|ABB35394.1| RNA-binding region RNP-1 (RNA recognition motif) [Synechococcus
sp. CC9605]
Length = 95
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 22 LSKSLNRDS---HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S L+R++ GF F+ + D D AI L + EW GR+I V K+
Sbjct: 30 CSLPLDRETGRKRGFAFVEMVNDADEQKAIDDLQDVEWMGRMIRVSKA 77
>gi|347756146|ref|YP_004863709.1| RNA-binding proteins (RRM domain) [Candidatus Chloracidobacterium
thermophilum B]
gi|347588663|gb|AEP13192.1| RNA-binding proteins (RRM domain) [Candidatus Chloracidobacterium
thermophilum B]
Length = 112
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ ED + AI TE+NGR + V +++
Sbjct: 41 SRGFGFVEFTSTEDGNRAIEMFHGTEFNGRTLTVNEARP 79
>gi|242094238|ref|XP_002437609.1| hypothetical protein SORBIDRAFT_10g030460 [Sorghum bicolor]
gi|241915832|gb|EER88976.1| hypothetical protein SORBIDRAFT_10g030460 [Sorghum bicolor]
Length = 223
Score = 34.7 bits (78), Expect = 8.1, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65
+D SK +++ ++ + R S GF F+++D E+A+ I+ L+++ GR I VEK
Sbjct: 80 KDYFSKHGKVVGCHVVLEPHTRVSRGFAFVTMDTVEEAERCIKYLNDSVMEGRNITVEK 138
>gi|152990027|ref|YP_001355749.1| RNA-binding protein RNP-1 [Nitratiruptor sp. SB155-2]
gi|151421888|dbj|BAF69392.1| RNA-binding protein RNP-1 [Nitratiruptor sp. SB155-2]
Length = 89
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
GFGF+ +D D AD+AI LD +E+ GR + V ++
Sbjct: 44 GFGFVEMD-DSSADSAIEALDGSEFGGRSLKVNEA 77
>gi|449434458|ref|XP_004135013.1| PREDICTED: uncharacterized RNA-binding protein C25G10.01-like,
partial [Cucumis sativus]
Length = 238
Score = 34.7 bits (78), Expect = 8.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
SK ++ L+ + R S GF F+++D +DA+ ++ L+++ GR I VEKS+
Sbjct: 80 SKEGKVASCFLVVEPRTRISRGFAFVTMDNVDDANRCVKHLNQSILEGRYITVEKSR 136
>gi|403213408|emb|CCK67910.1| hypothetical protein KNAG_0A02210 [Kazachstania naganishii CBS
8797]
Length = 682
Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 20 SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+++ K +N+ S GFGF+S +ED A+ + + NG+++ V+ +K
Sbjct: 46 AVVVKDVNKKSRGFGFVSFASEEDTKEALLKARKEKLNGQLLRVDIAK 93
>gi|226506948|ref|NP_001149776.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|195633803|gb|ACG36746.1| glycine-rich RNA-binding protein 7 [Zea mays]
Length = 276
Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
RD +K Q++ ++ + S GFGF++ E+A AAI LD +GR I V
Sbjct: 47 RDEFAKYGQVIEARIIIDRESGRSRGFGFVTYTSSEEASAAITALDGKTLDGRSIRV 103
>gi|78184977|ref|YP_377412.1| RNA-binding region RNP-1 [Synechococcus sp. CC9902]
gi|116072453|ref|ZP_01469720.1| RNA-binding region RNP-1 [Synechococcus sp. BL107]
gi|78169271|gb|ABB26368.1| RNA-binding region RNP-1 [Synechococcus sp. CC9902]
gi|116064975|gb|EAU70734.1| RNA-binding region RNP-1 [Synechococcus sp. BL107]
Length = 95
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 22 LSKSLNRDS---HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S L+R++ GF F+ + D D AI L + EW GR+I V K+
Sbjct: 30 CSLPLDRETGRKRGFAFVEMVNDADEQKAIDDLQDVEWMGRMIRVSKA 77
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 34.7 bits (78), Expect = 8.3, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 33/61 (54%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
R+ K Q+ SL + S GFGF++ + E A A+ L++ +W G+ ++V ++
Sbjct: 255 RELFEKYGQITSASLAHDNETGKSRGFGFVNFVKHESAAKAVDELNDKDWKGQKLYVGRA 314
Query: 67 K 67
+
Sbjct: 315 Q 315
>gi|262381921|ref|ZP_06075059.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262297098|gb|EEY85028.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 90
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+ L DE A AI L++ ++G++I++ +++
Sbjct: 8 SRGFGFVELSDDELAKKAIEELNQASYDGKVINITEARP 46
>gi|226497258|ref|NP_001140274.1| uncharacterized protein LOC100272318 [Zea mays]
gi|194698792|gb|ACF83480.1| unknown [Zea mays]
gi|414883568|tpg|DAA59582.1| TPA: ribonucleoprotein [Zea mays]
Length = 341
Score = 34.3 bits (77), Expect = 8.5, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGR 59
S GFGF+S EDA AA+ +LD E GR
Sbjct: 251 SRGFGFVSFSTAEDAQAALESLDGVELEGR 280
>gi|427415488|ref|ZP_18905672.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
gi|425756163|gb|EKU97020.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
Length = 90
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ + + + AAI LD EW GR + V K+K
Sbjct: 43 GFAFVEMGAESEETAAIEALDGAEWMGRDLKVNKAKP 79
>gi|336371226|gb|EGN99565.1| hypothetical protein SERLA73DRAFT_159820 [Serpula lacrymans var.
lacrymans S7.3]
Length = 127
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S GFGF++ +++A+AAI +L E + +GR I V
Sbjct: 43 SRGFGFVTFSSEQEAEAAINSLHEQDLDGRRIKV 76
>gi|410082223|ref|XP_003958690.1| hypothetical protein KAFR_0H01450 [Kazachstania africana CBS
2517]
gi|372465279|emb|CCF59555.1| hypothetical protein KAFR_0H01450 [Kazachstania africana CBS
2517]
Length = 690
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 20 SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+++ K +N+ S GFGF+S +ED A+ ++ NG ++ V+ +K
Sbjct: 51 AVVVKDVNKKSRGFGFVSFATEEDTKDALGKARRSKLNGNVLRVDIAK 98
>gi|357440279|ref|XP_003590417.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355479465|gb|AES60668.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 591
Score = 34.3 bits (77), Expect = 8.7, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 22 LSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+ K N S GFGF++ D +DA A+ +D +++ +I++V +++
Sbjct: 225 IKKDENGQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQ 270
>gi|195611722|gb|ACG27691.1| ribonucleoprotein [Zea mays]
Length = 341
Score = 34.3 bits (77), Expect = 8.7, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGR 59
S GFGF+S EDA AA+ +LD E GR
Sbjct: 251 SRGFGFVSFSTAEDAQAALESLDGVELEGR 280
>gi|387219259|gb|AFJ69338.1| hypothetical protein NGATSA_3013400, partial [Nannochloropsis
gaditana CCMP526]
Length = 290
Score = 34.3 bits (77), Expect = 8.8, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 16 LLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
++ ++++ LNR S GFGF+ + E+ + AI LD E +GR I+V S
Sbjct: 213 VVSVTIVKDQLNR-SKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTS 264
>gi|312374084|gb|EFR21728.1| hypothetical protein AND_16492 [Anopheles darlingi]
Length = 925
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 35/58 (60%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
SK +++ + +++ S + +G++++ +DA I L TE +GR+I VE++KS
Sbjct: 325 SKYGKVMGVKVVTNSRTPGARCYGYVTMGSAKDATECINHLHRTELHGRLISVERAKS 382
>gi|340992759|gb|EGS23314.1| hypothetical protein CTHT_0009820 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 191
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
S GFGF+ + DA A+ ++ E++GR I V+K+ T
Sbjct: 42 SRGFGFVRYTNEADAQKAMDAMNNVEFDGRQIRVDKASDT 81
>gi|298709686|emb|CBJ31492.1| RNP-1 like RNA-binding protein [Ectocarpus siliculosus]
Length = 262
Score = 34.3 bits (77), Expect = 8.9, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 19 LSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69
+ L+ K + S G+GF+ D+ A AI TL+ E NGR++ ++ + ++
Sbjct: 125 VKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELNGRVVELKPAITS 175
>gi|195589101|ref|XP_002084294.1| GD14198 [Drosophila simulans]
gi|194196303|gb|EDX09879.1| GD14198 [Drosophila simulans]
Length = 778
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 16 LLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
++ ++L L R GFG ++ E A A TLD T+++GR++H+ SK
Sbjct: 250 VVEVNLPLDKLTRKIKGFGTVTYMMPEHALKAFNTLDGTDFHGRLLHLLPSK 301
>gi|115488680|ref|NP_001066827.1| Os12g0502200 [Oryza sativa Japonica Group]
gi|77555842|gb|ABA98638.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113649334|dbj|BAF29846.1| Os12g0502200 [Oryza sativa Japonica Group]
gi|125579440|gb|EAZ20586.1| hypothetical protein OsJ_36195 [Oryza sativa Japonica Group]
gi|215694288|dbj|BAG89281.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215708787|dbj|BAG94056.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 258
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
RD + Q++ +++ S GFGF++ E+A AAI LD + +GR I V +
Sbjct: 48 RDTFANYGQVIEAKIINDRETGRSRGFGFITYASSEEASAAITALDGKDLDGRNIRVNTA 107
Query: 67 K 67
Sbjct: 108 N 108
>gi|325182043|emb|CCA16496.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 193
Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 35/57 (61%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+K +L + +++ ++R+S GF F++ + DA+ A++ L+ + GR I VE ++
Sbjct: 50 AKFGRLEKCEVITDPISRESRGFAFVTFEDVRDANDAVQELNGKDIQGRRIRVEHAR 106
>gi|449491291|ref|XP_004158852.1| PREDICTED: uncharacterized LOC101219220 [Cucumis sativus]
Length = 244
Score = 34.3 bits (77), Expect = 9.3, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
SK ++ L+ + R S GF F+++D +DA+ ++ L+++ GR I VEKS+
Sbjct: 86 SKEGKVASCFLVVEPRTRISRGFAFVTMDNVDDANRCVKHLNQSILEGRYITVEKSR 142
>gi|116793682|gb|ABK26841.1| unknown [Picea sitchensis]
Length = 347
Score = 34.3 bits (77), Expect = 9.4, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF+S + + +AA+ +D E GR I V +KS
Sbjct: 301 SRGFGFVSFSSEAEVEAAVSEMDGLEVEGRSIRVNVAKS 339
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.130 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 955,798,579
Number of Sequences: 23463169
Number of extensions: 28641789
Number of successful extensions: 69091
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 67538
Number of HSP's gapped (non-prelim): 1618
length of query: 69
length of database: 8,064,228,071
effective HSP length: 41
effective length of query: 28
effective length of database: 7,102,238,142
effective search space: 198862667976
effective search space used: 198862667976
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 69 (31.2 bits)