BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045845
(69 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q10422|YDC1_SCHPO Uncharacterized RNA-binding protein C25G10.01
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC25G10.01 PE=1 SV=1
Length = 297
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
Query: 3 GKASRDRESKTYQLL-------RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETE 55
G ASR +E + Q+ + ++ + + + S GFGFLS E+A +AI L+ E
Sbjct: 107 GIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQE 166
Query: 56 WNGRIIHVEKSK 67
+ GR+++V+K+K
Sbjct: 167 FYGRVLNVQKAK 178
>sp|Q9WX37|RBPE_NOSS1 Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpE PE=3 SV=3
Length = 99
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ ++ DAAI+ LD EW GR++ V K++
Sbjct: 43 GFGFVEMESSAAEDAAIQALDGAEWMGRVLKVNKARP 79
>sp|Q57014|RBPA_SYNY3 Putative RNA-binding protein RbpA OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=rbpA PE=3 SV=3
Length = 101
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ L+ D + AAI LD EW GR + V K+K
Sbjct: 43 GFGFVELEADAEETAAIEALDGAEWMGRDLKVNKAKP 79
>sp|Q44556|RBPD_NOSS1 Putative RNA-binding protein RbpD OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpD PE=3 SV=3
Length = 94
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 31 HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ ++ D DAAI LD EW GR + V K+K
Sbjct: 42 RGFAFVEMNEDAQEDAAITELDGAEWMGRQLRVNKAKP 79
>sp|Q44554|RBPB_NOSS1 Putative RNA-binding protein RbpB OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpB PE=3 SV=3
Length = 103
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GFGF+ + D + AAI LD EW GR + V K+K
Sbjct: 43 GFGFVEMGSDAEETAAIEALDGAEWMGRDLKVNKAKP 79
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ E NG+ I+V +++
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 5/50 (10%)
Query: 23 SKSLNRD-----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S SL RD S GFGF++ EDA A++ L+E E++G+ ++V +++
Sbjct: 270 SSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQ 319
>sp|Q06AT9|RBM4B_PIG RNA-binding protein 4B OS=Sus scrofa GN=RBM4B PE=2 SV=1
Length = 359
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S ++ EDA+ A+ ++ E +G+II V +++
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
>sp|Q64LC9|RBM4B_RAT RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm4b PE=2 SV=2
Length = 357
Score = 37.4 bits (85), Expect = 0.028, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>sp|Q8VE92|RBM4B_MOUSE RNA-binding protein 4B OS=Mus musculus GN=Rbm4b PE=1 SV=1
Length = 357
Score = 37.4 bits (85), Expect = 0.028, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 OS=Oryctolagus cuniculus GN=RBM4 PE=2 SV=1
Length = 359
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>sp|Q9BQ04|RBM4B_HUMAN RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE=1 SV=1
Length = 359
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=1 SV=1
Length = 361
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>sp|Q3MHX3|RBM4_BOVIN RNA-binding protein 4 OS=Bos taurus GN=RBM4 PE=2 SV=1
Length = 362
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>sp|P37838|NOP4_YEAST Nucleolar protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NOP4 PE=1 SV=1
Length = 685
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 33/55 (60%)
Query: 13 TYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
+ ++ +++ K N+ S GFGF+S ++D A+ +T++NG I+ V+ +K
Sbjct: 48 NFAPIKHAVVVKDTNKRSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIAK 102
>sp|Q4R979|RBM4_MACFA RNA-binding protein 4 OS=Macaca fascicularis GN=RBM4 PE=2 SV=1
Length = 364
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>sp|Q9BWF3|RBM4_HUMAN RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=1 SV=1
Length = 364
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 33 FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+ F+ ++R EDA AIR LD TE+ G+ +HV+ S S
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 148
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 21 LLSKSLNRDS----HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
++S SL +D+ GFGF++ ++ EDA A+ L+++E NG ++V +++
Sbjct: 245 IVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQ 295
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 36.6 bits (83), Expect = 0.053, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF+S +R EDA A+ ++ + NG+ I V +++
Sbjct: 230 SRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQ 267
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S GFGF+S ++ A+ AI+ +D E NGR I V
Sbjct: 75 SRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRV 108
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 35.8 bits (81), Expect = 0.074, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 27 NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
N S GFGF+S +R EDA A+ ++ + NG+ + V +++
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQ 267
>sp|Q9WX39|RBPF_NOSS1 Putative RNA-binding protein RbpF OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpF PE=3 SV=3
Length = 105
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
GF F+ + D + AAI LD EW GR + V K+K
Sbjct: 43 GFAFVEMGSDAEETAAIEGLDGAEWMGRDLKVNKAKP 79
>sp|Q9FZ84|RBG6_ARATH Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis
thaliana GN=RBG6 PE=2 SV=1
Length = 155
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF++ D E A+ A++ + E +GRII V + S
Sbjct: 76 SRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHPADS 114
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+S +L+RD S GFGF++ + E A A+ L+E E NG+ ++ ++++
Sbjct: 254 ISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQT 304
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 22 LSKSLNRD----SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
+S +L+RD S GFGF++ + E A A+ L+E E NG+ ++ ++++
Sbjct: 254 ISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQT 304
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
+D SK + L + +++ S + S GFGF+S D E A A+ ++ + NG++I V ++
Sbjct: 207 KDVFSKYGKTLSVKVMTDSSGK-SKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA 265
Query: 67 K 67
+
Sbjct: 266 Q 266
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF++ E+A A+ ++ E NGR+I+V +++
Sbjct: 230 SRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQ 267
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF++ E+A A+ ++ E NGR+I+V +++
Sbjct: 230 SRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQ 267
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 22 LSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
L K S GFGF++ + E A A+ L++ E NG+ I+V +++
Sbjct: 279 LEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQ 324
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 22 LSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
L K + S GFGF++ + E A A+ L++ E NG+ I+V +++
Sbjct: 264 LEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQ 309
>sp|O88453|SAFB1_RAT Scaffold attachment factor B1 OS=Rattus norvegicus GN=Safb PE=1
SV=2
Length = 931
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 36/58 (62%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S+ +++ +++ + + + +GF+++ E+A I L +TE +G++I VEK+KS
Sbjct: 449 SRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEKAKS 506
>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea
GN=PSRP2 PE=1 SV=1
Length = 260
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S+GFGF+S +E+ +AAI+ L+ + G+ I V K+
Sbjct: 224 SNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
S FGF+++ EDA+A I L++TE GR I V
Sbjct: 124 SRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKV 157
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S GFGF++ D ++ AI++LD + +GR I V ++++
Sbjct: 244 SKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEA 282
>sp|Q80YR5|SAFB2_MOUSE Scaffold attachment factor B2 OS=Mus musculus GN=Safb2 PE=1 SV=2
Length = 991
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 35/58 (60%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
SK +++ +++ + + + +GF+++ ++A I L TE +GR+I VEK+K+
Sbjct: 472 SKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHGRMISVEKAKN 529
>sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster
GN=cyp33 PE=1 SV=1
Length = 300
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
GF F+ ++ EDA AAI ++++E GR I V +K
Sbjct: 48 GFAFIEYEQSEDAAAAIDNMNDSELCGRTIRVNLAK 83
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66
S GFGF+++ E+AD A+ + + NGR++ V K+
Sbjct: 137 SRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKA 173
>sp|P0CR16|MRD1_CRYNJ Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=MRD1 PE=3 SV=1
Length = 769
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
G FL EDA AA + LD+T + GR++HV
Sbjct: 263 GTAFLQFHNAEDALAAYKALDKTIFQGRLLHV 294
>sp|P0CR17|MRD1_CRYNB Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=MRD1 PE=3 SV=1
Length = 769
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63
G FL EDA AA + LD+T + GR++HV
Sbjct: 263 GTAFLQFHNAEDALAAYKALDKTIFQGRLLHV 294
>sp|D3YXK2|SAFB1_MOUSE Scaffold attachment factor B1 OS=Mus musculus GN=Safb PE=1 SV=2
Length = 937
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 36/58 (62%)
Query: 11 SKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68
S+ +++ +++ + + + +GF+++ E+A I L +TE +G++I VEK+KS
Sbjct: 449 SRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCISHLHKTELHGKMISVEKAKS 506
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF++ + + A AAI +D E NGR I V +
Sbjct: 75 SRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112
>sp|Q9UNP9|PPIE_HUMAN Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE
PE=1 SV=1
Length = 301
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
GF F+ + EDA AAI ++E+E GR I V +K
Sbjct: 48 GFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 83
>sp|A4FV72|PPIE_BOVIN Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2
SV=1
Length = 301
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
GF F+ + EDA AAI ++E+E GR I V +K
Sbjct: 48 GFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 83
>sp|Q5R723|PPIE_PONAB Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE
PE=2 SV=1
Length = 301
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
GF F+ + EDA AAI ++E+E GR I V +K
Sbjct: 48 GFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 83
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67
S GFGF++ E+A A+ ++ E NGR+++V +++
Sbjct: 230 SRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQ 267
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,660,792
Number of Sequences: 539616
Number of extensions: 686008
Number of successful extensions: 1807
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1579
Number of HSP's gapped (non-prelim): 234
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)