Query 045845
Match_columns 69
No_of_seqs 102 out of 1502
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 06:05:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 2.7E-19 5.9E-24 91.9 9.4 67 2-68 44-113 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 4.5E-18 9.8E-23 96.8 9.2 67 2-68 279-348 (352)
3 KOG0122 Translation initiation 99.8 3.5E-18 7.5E-23 92.8 7.7 66 3-68 200-268 (270)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.7E-17 3.8E-22 94.5 9.0 67 2-68 13-82 (352)
5 KOG4207 Predicted splicing fac 99.7 5.3E-18 1.1E-22 90.5 5.0 66 2-67 23-91 (256)
6 TIGR01659 sex-lethal sex-letha 99.7 8.6E-17 1.9E-21 92.1 8.1 66 3-68 118-186 (346)
7 PF00076 RRM_1: RNA recognitio 99.7 1.2E-15 2.5E-20 69.4 8.9 59 3-62 9-70 (70)
8 smart00361 RRM_1 RNA recogniti 99.7 5.5E-16 1.2E-20 71.2 7.8 59 6-64 2-70 (70)
9 KOG0148 Apoptosis-promoting RN 99.7 2.4E-16 5.2E-21 86.9 6.4 65 3-67 73-140 (321)
10 KOG0145 RNA-binding protein EL 99.7 3.6E-16 7.8E-21 86.2 6.8 66 3-68 52-120 (360)
11 PF13893 RRM_5: RNA recognitio 99.7 2.5E-15 5.3E-20 66.3 8.3 55 9-66 1-56 (56)
12 TIGR01645 half-pint poly-U bin 99.7 9.4E-16 2E-20 92.5 9.0 65 3-67 215-282 (612)
13 TIGR01645 half-pint poly-U bin 99.7 7.7E-16 1.7E-20 92.8 7.9 65 2-66 117-184 (612)
14 TIGR01659 sex-lethal sex-letha 99.7 2E-15 4.2E-20 86.6 8.9 66 3-68 204-274 (346)
15 PLN03213 repressor of silencin 99.6 1.4E-15 3.1E-20 89.7 7.4 63 2-68 20-87 (759)
16 KOG0113 U1 small nuclear ribon 99.6 3.1E-15 6.6E-20 83.4 8.0 65 3-67 112-179 (335)
17 PF14259 RRM_6: RNA recognitio 99.6 1.6E-14 3.6E-19 65.9 8.4 60 2-62 8-70 (70)
18 TIGR01622 SF-CC1 splicing fact 99.6 9.9E-15 2.1E-19 85.7 9.1 66 2-67 196-264 (457)
19 smart00360 RRM RNA recognition 99.6 1.4E-14 3E-19 65.2 7.8 62 3-64 7-71 (71)
20 TIGR01628 PABP-1234 polyadenyl 99.6 1.1E-14 2.4E-19 87.3 9.0 66 2-67 10-78 (562)
21 TIGR01642 U2AF_lg U2 snRNP aux 99.6 1.4E-14 3E-19 85.9 9.2 66 2-67 305-373 (509)
22 KOG0149 Predicted RNA-binding 99.6 3.3E-15 7.1E-20 80.9 5.7 64 2-66 22-88 (247)
23 KOG0125 Ataxin 2-binding prote 99.6 4.9E-15 1.1E-19 83.5 6.1 65 2-68 106-173 (376)
24 TIGR01628 PABP-1234 polyadenyl 99.6 1.5E-14 3.1E-19 86.9 8.6 65 3-68 296-363 (562)
25 KOG0111 Cyclophilin-type pepti 99.6 1.3E-15 2.8E-20 82.3 3.5 65 4-68 22-89 (298)
26 PLN03120 nucleic acid binding 99.6 2.9E-14 6.3E-19 78.7 8.3 63 2-68 14-79 (260)
27 KOG0117 Heterogeneous nuclear 99.6 1.8E-14 4E-19 83.7 7.2 64 3-66 94-161 (506)
28 KOG0107 Alternative splicing f 99.6 1.8E-14 3.9E-19 75.3 6.0 61 3-67 21-83 (195)
29 KOG0108 mRNA cleavage and poly 99.6 2E-14 4.3E-19 84.1 6.8 66 2-67 28-96 (435)
30 KOG0121 Nuclear cap-binding pr 99.5 5.7E-14 1.2E-18 70.5 5.9 65 2-66 46-113 (153)
31 TIGR01622 SF-CC1 splicing fact 99.5 1.6E-13 3.5E-18 80.6 8.8 65 2-67 99-166 (457)
32 smart00362 RRM_2 RNA recogniti 99.5 3E-13 6.4E-18 61.0 7.8 60 3-64 10-72 (72)
33 COG0724 RNA-binding proteins ( 99.5 2.2E-13 4.7E-18 74.2 8.2 66 2-67 125-193 (306)
34 KOG0130 RNA-binding protein RB 99.5 4.9E-14 1.1E-18 71.3 5.0 64 3-66 83-149 (170)
35 KOG0117 Heterogeneous nuclear 99.5 1.3E-13 2.8E-18 80.3 6.8 63 1-69 268-331 (506)
36 KOG0126 Predicted RNA-binding 99.5 1.3E-15 2.8E-20 80.1 -1.2 64 2-65 45-111 (219)
37 TIGR01648 hnRNP-R-Q heterogene 99.5 1.7E-13 3.7E-18 82.6 7.3 63 3-66 69-135 (578)
38 KOG0147 Transcriptional coacti 99.5 1.1E-13 2.3E-18 81.9 6.1 64 2-65 288-354 (549)
39 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 5E-13 1.1E-17 79.4 8.5 61 3-68 287-350 (481)
40 KOG0124 Polypyrimidine tract-b 99.5 7.4E-14 1.6E-18 80.2 4.4 64 2-65 123-189 (544)
41 PLN03121 nucleic acid binding 99.4 1.7E-12 3.8E-17 71.0 8.0 61 2-66 15-78 (243)
42 KOG0144 RNA-binding protein CU 99.4 4.7E-13 1E-17 77.8 6.1 66 3-68 45-116 (510)
43 KOG0145 RNA-binding protein EL 99.4 1.6E-12 3.4E-17 72.0 7.6 63 4-66 290-355 (360)
44 TIGR01648 hnRNP-R-Q heterogene 99.4 2.3E-12 4.9E-17 77.9 8.6 61 2-68 243-306 (578)
45 KOG0131 Splicing factor 3b, su 99.4 3.3E-13 7.1E-18 71.1 4.0 64 4-67 21-87 (203)
46 cd00590 RRM RRM (RNA recogniti 99.4 1E-11 2.2E-16 56.2 8.5 61 3-64 10-73 (74)
47 KOG0148 Apoptosis-promoting RN 99.4 5.7E-12 1.2E-16 69.9 7.0 59 4-68 176-237 (321)
48 KOG0127 Nucleolar protein fibr 99.4 5.4E-12 1.2E-16 75.3 7.1 65 2-67 127-194 (678)
49 KOG0144 RNA-binding protein CU 99.3 3.2E-12 6.9E-17 74.4 5.9 65 3-68 135-205 (510)
50 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 1E-11 2.3E-16 73.8 8.0 66 3-68 405-479 (481)
51 KOG0114 Predicted RNA-binding 99.3 2.8E-11 6.1E-16 59.0 7.5 66 2-67 28-93 (124)
52 KOG0105 Alternative splicing f 99.3 6.7E-12 1.5E-16 66.6 5.2 65 3-68 17-82 (241)
53 KOG0127 Nucleolar protein fibr 99.3 4.4E-12 9.6E-17 75.6 5.0 67 2-68 15-84 (678)
54 TIGR01642 U2AF_lg U2 snRNP aux 99.3 2.5E-11 5.4E-16 72.2 8.0 61 7-67 434-500 (509)
55 KOG0131 Splicing factor 3b, su 99.3 1.5E-11 3.2E-16 64.9 5.3 65 3-67 107-175 (203)
56 KOG0123 Polyadenylate-binding 99.3 3.1E-11 6.8E-16 70.0 6.8 62 3-67 9-73 (369)
57 KOG0415 Predicted peptidyl pro 99.3 1.2E-11 2.6E-16 70.9 4.7 65 4-68 251-318 (479)
58 KOG4661 Hsp27-ERE-TATA-binding 99.2 4.1E-11 8.8E-16 72.3 6.3 63 6-68 419-484 (940)
59 KOG0146 RNA-binding protein ET 99.2 1.2E-11 2.7E-16 68.8 3.3 65 4-68 297-364 (371)
60 KOG4206 Spliceosomal protein s 99.2 1.3E-10 2.9E-15 62.8 6.1 60 8-68 29-89 (221)
61 KOG4208 Nucleolar RNA-binding 99.1 3.2E-10 7E-15 60.8 6.1 63 4-66 61-127 (214)
62 KOG0109 RNA-binding protein LA 99.1 2.3E-10 5E-15 64.2 5.3 58 3-68 13-73 (346)
63 KOG0124 Polypyrimidine tract-b 99.1 2.6E-10 5.6E-15 65.9 5.2 64 3-66 221-287 (544)
64 KOG0110 RNA-binding protein (R 99.1 7.4E-11 1.6E-15 71.9 2.9 67 2-68 623-692 (725)
65 KOG0110 RNA-binding protein (R 99.1 1.2E-09 2.6E-14 66.8 7.8 66 2-67 525-596 (725)
66 KOG0146 RNA-binding protein ET 99.1 1.2E-09 2.5E-14 61.1 6.7 64 4-67 31-99 (371)
67 KOG0226 RNA-binding proteins [ 99.0 3.1E-10 6.7E-15 62.6 3.3 62 4-65 202-266 (290)
68 KOG4212 RNA-binding protein hn 99.0 1.6E-09 3.5E-14 63.8 6.3 64 2-66 54-121 (608)
69 KOG0109 RNA-binding protein LA 99.0 9.2E-10 2E-14 61.9 4.6 58 3-68 89-149 (346)
70 KOG0123 Polyadenylate-binding 99.0 5.7E-09 1.2E-13 60.7 7.5 61 3-66 87-150 (369)
71 KOG4205 RNA-binding protein mu 99.0 4.7E-10 1E-14 63.8 3.0 66 2-68 16-84 (311)
72 KOG0533 RRM motif-containing p 98.9 7.4E-09 1.6E-13 57.2 6.9 66 2-67 93-160 (243)
73 KOG0132 RNA polymerase II C-te 98.9 1.1E-08 2.3E-13 63.5 6.4 61 3-67 432-493 (894)
74 KOG4205 RNA-binding protein mu 98.9 4.7E-09 1E-13 59.8 4.2 65 3-68 108-175 (311)
75 KOG0153 Predicted RNA-binding 98.8 1.9E-08 4.1E-13 57.7 6.4 62 3-68 239-302 (377)
76 KOG4209 Splicing factor RNPS1, 98.8 1E-08 2.2E-13 56.4 4.5 63 3-66 112-177 (231)
77 KOG1190 Polypyrimidine tract-b 98.8 6.6E-08 1.4E-12 56.7 6.8 61 3-68 309-372 (492)
78 KOG0106 Alternative splicing f 98.7 1.6E-08 3.5E-13 55.0 3.4 60 2-67 11-71 (216)
79 KOG4660 Protein Mei2, essentia 98.6 2.5E-08 5.4E-13 59.8 2.5 57 3-62 86-143 (549)
80 KOG4211 Splicing factor hnRNP- 98.6 4.3E-07 9.3E-12 54.2 6.6 65 2-67 20-84 (510)
81 KOG0116 RasGAP SH3 binding pro 98.6 6E-07 1.3E-11 53.2 6.8 66 2-68 298-366 (419)
82 KOG1548 Transcription elongati 98.5 1.3E-06 2.9E-11 50.3 7.6 59 6-67 290-350 (382)
83 PF04059 RRM_2: RNA recognitio 98.5 2.3E-06 5E-11 41.5 7.3 64 4-67 13-85 (97)
84 KOG2314 Translation initiation 98.5 5.1E-07 1.1E-11 54.9 5.0 55 8-63 80-138 (698)
85 KOG0120 Splicing factor U2AF, 98.5 3.6E-07 7.9E-12 54.9 4.3 65 3-67 300-367 (500)
86 KOG4212 RNA-binding protein hn 98.4 8.6E-07 1.9E-11 52.7 5.5 61 2-66 546-608 (608)
87 KOG0151 Predicted splicing reg 98.4 7.1E-07 1.5E-11 55.4 5.2 66 3-68 185-256 (877)
88 KOG1548 Transcription elongati 98.4 2.4E-06 5.3E-11 49.3 6.4 64 3-67 145-219 (382)
89 KOG4454 RNA binding protein (R 98.4 7.9E-07 1.7E-11 48.7 3.9 63 3-66 20-84 (267)
90 KOG0147 Transcriptional coacti 98.3 3.8E-06 8.2E-11 50.8 6.8 56 7-65 468-524 (549)
91 KOG4307 RNA binding protein RB 98.3 3.9E-06 8.4E-11 52.4 6.7 64 2-65 877-943 (944)
92 COG5175 MOT2 Transcriptional r 98.3 2.8E-06 6.1E-11 49.2 5.6 57 10-66 138-200 (480)
93 KOG1995 Conserved Zn-finger pr 98.1 2.8E-06 6E-11 49.1 3.2 65 3-67 77-152 (351)
94 KOG4210 Nuclear localization s 98.1 1.1E-06 2.5E-11 49.8 1.4 67 1-68 194-263 (285)
95 KOG1456 Heterogeneous nuclear 98.1 2.4E-05 5.2E-10 46.0 6.7 64 3-69 133-199 (494)
96 KOG1457 RNA binding protein (c 98.1 5E-05 1.1E-09 42.0 7.4 65 4-68 46-117 (284)
97 KOG2202 U2 snRNP splicing fact 98.1 2.7E-06 5.8E-11 47.3 2.4 61 7-67 83-146 (260)
98 KOG4211 Splicing factor hnRNP- 98.1 1.5E-05 3.2E-10 47.9 5.5 63 2-66 113-179 (510)
99 KOG0106 Alternative splicing f 98.0 5.8E-06 1.3E-10 45.2 2.1 55 4-65 111-167 (216)
100 PF05172 Nup35_RRM: Nup53/35/4 97.9 0.00018 3.8E-09 35.2 6.3 60 7-67 20-90 (100)
101 PF11608 Limkain-b1: Limkain b 97.8 0.00018 3.8E-09 34.2 5.2 51 8-66 22-74 (90)
102 KOG0120 Splicing factor U2AF, 97.8 0.00021 4.6E-09 43.4 6.6 60 7-66 424-489 (500)
103 KOG1190 Polypyrimidine tract-b 97.7 0.00014 3E-09 43.3 5.1 65 3-69 425-491 (492)
104 KOG1456 Heterogeneous nuclear 97.7 0.00031 6.7E-09 41.5 6.5 60 4-68 300-362 (494)
105 PF08952 DUF1866: Domain of un 97.7 0.00062 1.3E-08 35.4 6.8 51 7-66 51-104 (146)
106 PF08777 RRM_3: RNA binding mo 97.6 0.00034 7.3E-09 34.5 5.0 47 4-54 13-60 (105)
107 PF04847 Calcipressin: Calcipr 97.5 0.0013 2.7E-08 35.5 6.7 60 6-69 9-71 (184)
108 KOG1457 RNA binding protein (c 97.4 0.00052 1.1E-08 38.1 4.7 53 3-57 221-274 (284)
109 PF08675 RNA_bind: RNA binding 97.3 0.001 2.2E-08 31.6 4.5 41 6-53 22-64 (87)
110 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.0015 3.2E-08 28.3 4.4 38 7-48 15-53 (53)
111 KOG1996 mRNA splicing factor [ 97.2 0.0029 6.2E-08 36.5 6.3 59 7-65 301-363 (378)
112 PF03880 DbpA: DbpA RNA bindin 96.9 0.0099 2.1E-07 27.4 6.2 56 3-66 12-74 (74)
113 KOG4849 mRNA cleavage factor I 96.9 0.0017 3.7E-08 38.3 3.5 61 3-63 91-156 (498)
114 KOG4206 Spliceosomal protein s 96.9 0.0083 1.8E-07 33.2 5.7 61 4-67 158-220 (221)
115 KOG1365 RNA-binding protein Fu 96.8 0.002 4.4E-08 38.4 3.3 64 2-66 290-359 (508)
116 KOG4285 Mitotic phosphoprotein 96.7 0.0081 1.8E-07 34.8 5.3 49 7-60 211-260 (350)
117 PF10309 DUF2414: Protein of u 96.7 0.014 3.1E-07 26.2 5.1 42 3-51 15-62 (62)
118 KOG2068 MOT2 transcription fac 96.5 0.0009 2E-08 38.8 0.6 55 11-65 99-159 (327)
119 PF11767 SET_assoc: Histone ly 96.4 0.027 5.9E-07 25.6 6.9 55 3-63 11-65 (66)
120 KOG0128 RNA-binding protein SA 95.9 0.0037 8.1E-08 40.2 1.1 66 2-68 746-814 (881)
121 KOG0112 Large RNA-binding prot 95.8 0.015 3.2E-07 38.0 3.4 60 5-68 468-530 (975)
122 KOG1365 RNA-binding protein Fu 95.4 0.11 2.5E-06 31.3 5.7 49 2-50 171-225 (508)
123 KOG2193 IGF-II mRNA-binding pr 95.1 0.049 1.1E-06 33.2 3.7 58 3-66 12-73 (584)
124 KOG2135 Proteins containing th 94.6 0.032 7E-07 34.2 2.2 58 5-68 386-445 (526)
125 KOG3152 TBP-binding protein, a 94.5 0.015 3.3E-07 33.0 0.6 57 4-60 86-157 (278)
126 KOG0129 Predicted RNA-binding 94.2 0.37 8E-06 30.0 6.0 49 3-51 270-326 (520)
127 PF15513 DUF4651: Domain of un 94.2 0.21 4.6E-06 22.4 3.8 33 7-39 9-43 (62)
128 KOG0105 Alternative splicing f 93.9 0.32 6.8E-06 26.8 4.8 48 3-57 126-176 (241)
129 KOG4660 Protein Mei2, essentia 93.8 0.24 5.1E-06 31.0 4.6 48 20-67 420-471 (549)
130 KOG2416 Acinus (induces apopto 93.4 0.083 1.8E-06 33.4 2.3 59 5-67 457-520 (718)
131 KOG0115 RNA-binding protein p5 93.1 0.14 3.1E-06 29.2 2.8 50 3-52 42-93 (275)
132 KOG0128 RNA-binding protein SA 93.0 0.015 3.2E-07 37.7 -1.2 52 4-55 679-733 (881)
133 KOG1855 Predicted RNA-binding 92.1 0.096 2.1E-06 31.9 1.4 48 7-54 246-309 (484)
134 KOG4574 RNA-binding protein (c 91.4 0.28 6.2E-06 32.4 3.0 60 3-68 309-373 (1007)
135 KOG0129 Predicted RNA-binding 91.3 0.69 1.5E-05 28.9 4.4 45 5-49 383-431 (520)
136 KOG4676 Splicing factor, argin 91.2 0.55 1.2E-05 28.6 3.8 61 3-64 18-84 (479)
137 PF15023 DUF4523: Protein of u 90.6 1.6 3.4E-05 23.2 5.7 51 8-64 106-157 (166)
138 KOG4307 RNA binding protein RB 89.9 0.23 5E-06 32.3 1.6 62 3-64 445-509 (944)
139 PF07576 BRAP2: BRCA1-associat 89.1 1.8 3.8E-05 21.7 6.7 51 6-58 27-81 (110)
140 smart00596 PRE_C2HC PRE_C2HC d 84.9 1.9 4.1E-05 19.8 2.7 57 7-66 2-62 (69)
141 KOG2591 c-Mpl binding protein, 82.6 1.7 3.7E-05 27.8 2.6 51 4-62 187-245 (684)
142 PF03468 XS: XS domain; Inter 82.2 4.9 0.00011 20.3 4.2 45 3-49 28-75 (116)
143 PF03467 Smg4_UPF3: Smg-4/UPF3 81.1 4.1 8.9E-05 22.0 3.5 28 31-58 55-82 (176)
144 KOG4019 Calcineurin-mediated s 77.1 7.5 0.00016 21.4 3.7 37 32-68 52-89 (193)
145 PF07530 PRE_C2HC: Associated 76.2 6.2 0.00013 17.9 3.3 58 7-67 2-63 (68)
146 PF03439 Spt5-NGN: Early trans 73.9 8 0.00017 18.2 3.2 26 30-55 43-68 (84)
147 KOG4210 Nuclear localization s 73.7 2.3 5.1E-05 24.7 1.4 52 7-58 103-157 (285)
148 PF11411 DNA_ligase_IV: DNA li 71.3 4.3 9.4E-05 16.2 1.5 15 3-17 20-34 (36)
149 PF02714 DUF221: Domain of unk 70.7 7.2 0.00016 22.7 2.9 21 34-54 1-21 (325)
150 KOG0112 Large RNA-binding prot 70.1 1.3 2.8E-05 29.7 -0.2 60 4-63 384-445 (975)
151 PF13689 DUF4154: Domain of un 68.1 15 0.00032 18.9 4.6 35 30-65 25-59 (145)
152 PRK14093 UDP-N-acetylmuramoyla 58.8 42 0.00091 20.9 5.7 62 2-63 306-374 (479)
153 PF11823 DUF3343: Protein of u 58.7 17 0.00037 16.4 2.6 27 33-59 3-29 (73)
154 PF15063 TC1: Thyroid cancer p 57.1 11 0.00024 17.7 1.6 17 3-19 36-52 (79)
155 PRK11634 ATP-dependent RNA hel 54.8 58 0.0013 21.3 6.1 35 32-67 527-561 (629)
156 KOG4483 Uncharacterized conser 53.9 54 0.0012 20.7 4.6 40 6-50 405-446 (528)
157 KOG3424 40S ribosomal protein 52.6 32 0.0007 17.7 3.4 43 1-44 32-82 (132)
158 PF08156 NOP5NT: NOP5NT (NUC12 52.6 5.5 0.00012 18.0 0.2 37 7-51 27-64 (67)
159 KOG2253 U1 snRNP complex, subu 51.8 8.3 0.00018 25.2 1.0 52 5-63 53-105 (668)
160 PF11956 KCNQC3-Ank-G_bd: Anky 51.1 8.1 0.00018 19.0 0.7 19 1-19 24-42 (102)
161 KOG2187 tRNA uracil-5-methyltr 49.8 10 0.00023 24.2 1.2 37 30-66 62-98 (534)
162 PF12244 DUF3606: Protein of u 44.6 17 0.00038 15.8 1.2 17 2-18 30-46 (57)
163 KOG3003 Molecular chaperone of 44.2 63 0.0014 18.6 3.7 16 4-19 162-177 (236)
164 KOG4365 Uncharacterized conser 43.9 4.2 9.2E-05 25.4 -1.0 63 3-66 14-79 (572)
165 PF08206 OB_RNB: Ribonuclease 42.8 22 0.00048 15.3 1.4 11 30-40 7-17 (58)
166 PRK08559 nusG transcription an 42.7 46 0.00099 17.5 2.8 25 30-54 45-69 (153)
167 PF10281 Ish1: Putative stress 42.3 26 0.00057 13.7 1.7 16 4-19 4-19 (38)
168 PF12687 DUF3801: Protein of u 41.4 64 0.0014 18.0 5.0 55 2-56 37-95 (204)
169 KOG0804 Cytoplasmic Zn-finger 40.7 97 0.0021 19.8 5.4 52 5-58 87-142 (493)
170 KOG2891 Surface glycoprotein [ 40.2 22 0.00048 21.1 1.5 52 5-56 174-247 (445)
171 TIGR00405 L26e_arch ribosomal 39.1 51 0.0011 16.9 2.6 26 29-54 36-61 (145)
172 PRK15464 cold shock-like prote 38.4 19 0.0004 16.5 0.8 11 30-40 15-25 (70)
173 PRK09937 stationary phase/star 38.4 22 0.00047 16.4 1.1 11 30-40 12-22 (74)
174 PRK14998 cold shock-like prote 37.6 22 0.00048 16.3 1.0 11 30-40 12-22 (73)
175 PRK15463 cold shock-like prote 37.4 21 0.00045 16.2 0.9 11 30-40 15-25 (70)
176 PRK09507 cspE cold shock prote 37.3 21 0.00045 16.2 0.9 11 30-40 14-24 (69)
177 PRK10943 cold shock-like prote 37.2 20 0.00043 16.2 0.8 11 30-40 14-24 (69)
178 PF12385 Peptidase_C70: Papain 37.1 34 0.00074 18.5 1.8 17 3-19 95-111 (166)
179 cd08757 SAM_PNT_ESE Sterile al 36.9 14 0.0003 16.7 0.3 18 2-19 41-58 (68)
180 smart00540 LEM in nuclear memb 36.4 35 0.00077 14.2 1.5 17 3-19 5-21 (44)
181 PF08394 Arc_trans_TRASH: Arch 35.9 37 0.0008 13.6 1.5 17 51-67 3-19 (37)
182 KOG1753 40S ribosomal protein 35.6 42 0.00092 17.6 1.9 31 4-34 102-132 (145)
183 PF03108 DBD_Tnp_Mut: MuDR fam 34.5 48 0.001 14.5 3.0 16 36-51 8-23 (67)
184 TIGR02381 cspD cold shock doma 34.2 28 0.00061 15.6 1.1 11 30-40 12-22 (68)
185 PRK00050 16S rRNA m(4)C1402 me 34.0 30 0.00066 20.4 1.4 17 3-19 138-154 (296)
186 cd08538 SAM_PNT-ESE-2-like Ste 33.6 18 0.00039 17.0 0.4 18 2-19 46-63 (78)
187 KOG1205 Predicted dehydrogenas 33.4 1.1E+02 0.0023 18.2 3.7 41 5-48 74-119 (282)
188 TIGR00006 S-adenosyl-methyltra 33.2 32 0.00069 20.5 1.4 17 3-19 140-156 (305)
189 PRK10354 RNA chaperone/anti-te 32.8 25 0.00055 15.9 0.8 11 30-40 15-25 (70)
190 PRK09890 cold shock protein Cs 32.5 26 0.00056 15.9 0.8 11 30-40 15-25 (70)
191 PF13543 KSR1-SAM: SAM like do 31.5 28 0.0006 18.1 0.9 18 1-18 96-113 (129)
192 PF00313 CSD: 'Cold-shock' DNA 31.3 43 0.00094 14.5 1.4 12 30-41 11-22 (66)
193 PF07292 NID: Nmi/IFP 35 domai 30.9 72 0.0016 15.4 3.5 30 34-64 1-32 (88)
194 PF13021 DUF3885: Domain of un 29.9 37 0.00081 13.7 1.0 17 2-18 12-28 (38)
195 COG4001 Predicted metal-bindin 29.9 53 0.0012 16.0 1.6 13 2-14 72-84 (102)
196 COG0769 MurE UDP-N-acetylmuram 29.6 1.5E+02 0.0033 18.8 6.5 48 2-52 304-354 (475)
197 PF09820 AAA-ATPase_like: Pred 29.4 35 0.00077 19.8 1.2 16 1-16 222-237 (284)
198 PF12829 Mhr1: Transcriptional 29.0 81 0.0017 15.4 2.9 21 31-51 51-71 (91)
199 cd04458 CSP_CDS Cold-Shock Pro 29.0 39 0.00084 14.7 1.1 10 31-40 12-21 (65)
200 COG1148 HdrA Heterodisulfide r 28.4 1.6E+02 0.0034 19.5 3.8 39 5-43 331-371 (622)
201 PF05023 Phytochelatin: Phytoc 27.9 62 0.0013 18.2 1.9 15 23-37 198-212 (212)
202 PRK10773 murF UDP-N-acetylmura 27.9 1.6E+02 0.0034 18.4 6.1 56 2-62 297-357 (453)
203 PF06014 DUF910: Bacterial pro 27.6 51 0.0011 14.9 1.3 13 7-19 5-17 (62)
204 cd08203 SAM_PNT Sterile alpha 26.9 24 0.00053 15.8 0.2 18 2-19 39-56 (66)
205 PF11212 DUF2999: Protein of u 26.5 68 0.0015 15.0 1.6 14 3-16 12-25 (82)
206 PF11181 YflT: Heat induced st 26.4 90 0.002 15.1 2.4 26 36-61 4-29 (103)
207 COG4861 Uncharacterized protei 25.1 60 0.0013 19.3 1.6 17 1-17 1-17 (345)
208 smart00738 NGN In Spt5p, this 24.3 73 0.0016 15.1 1.6 23 32-54 60-82 (106)
209 PF08671 SinI: Anti-repressor 23.7 62 0.0013 12.3 1.5 12 3-14 16-27 (30)
210 PF07979 Intimin_C: Intimin C- 23.7 74 0.0016 15.9 1.5 17 3-19 30-46 (101)
211 PF13405 EF-hand_6: EF-hand do 22.7 52 0.0011 11.8 0.8 10 5-14 18-27 (31)
212 PF01282 Ribosomal_S24e: Ribos 21.8 1.1E+02 0.0024 14.5 2.8 12 4-15 13-24 (84)
213 PF02617 ClpS: ATP-dependent C 21.8 1E+02 0.0022 14.2 1.8 34 31-64 47-81 (82)
214 PF07820 TraC: TraC-like prote 21.6 92 0.002 15.3 1.6 14 2-15 41-54 (92)
215 PHA02763 hypothetical protein; 21.4 94 0.002 15.1 1.6 26 34-59 63-88 (102)
216 PF03672 UPF0154: Uncharacteri 21.2 94 0.002 14.1 1.5 15 4-18 32-46 (64)
217 COG0275 Predicted S-adenosylme 21.0 80 0.0017 19.1 1.6 17 3-19 144-160 (314)
218 KOG1902 Putative signal transd 21.0 1.3E+02 0.0029 18.6 2.5 31 5-35 100-131 (441)
219 PHA02564 V virion protein; Pro 21.0 1.5E+02 0.0032 15.7 2.4 19 32-50 37-55 (141)
220 COG5341 Uncharacterized protei 20.8 75 0.0016 16.5 1.3 18 50-67 70-87 (132)
221 KOG1542 Cysteine proteinase Ca 20.6 1E+02 0.0022 19.1 1.9 19 1-19 269-287 (372)
222 KOG2944 Glyoxalase [Carbohydra 20.4 95 0.0021 17.0 1.6 24 27-51 110-133 (170)
223 KOG3432 Vacuolar H+-ATPase V1 20.2 94 0.002 15.8 1.5 16 3-18 44-59 (121)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.82 E-value=2.7e-19 Score=91.94 Aligned_cols=67 Identities=25% Similarity=0.409 Sum_probs=62.5
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+++++++|+++|++||.| .++.++.+++++|||||+|.+.++|+.|+..+|+..++|++|+|+.+++
T Consensus 44 ~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~ 113 (144)
T PLN03134 44 WGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAND 113 (144)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCc
Confidence 468999999999999999 7888889999999999999999999999999999999999999998753
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.78 E-value=4.5e-18 Score=96.84 Aligned_cols=67 Identities=15% Similarity=0.212 Sum_probs=62.3
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|.++|++||.| +++.++.++.++|||||.|.+.++|..|+..|||..++|++|+|.+..+
T Consensus 279 ~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 279 PDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 357899999999999999 8888888999999999999999999999999999999999999997653
No 3
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=3.5e-18 Score=92.78 Aligned_cols=66 Identities=26% Similarity=0.312 Sum_probs=63.1
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++|+++|.+||++ ++..|+.||.++|||||.|.+.++|.+||..|||+-++.=.|+|++++|
T Consensus 200 d~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP 268 (270)
T KOG0122|consen 200 DMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKP 268 (270)
T ss_pred ccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCC
Confidence 46789999999999999 8899999999999999999999999999999999999999999999987
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.75 E-value=1.7e-17 Score=94.46 Aligned_cols=67 Identities=21% Similarity=0.354 Sum_probs=62.7
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||+| +++.++.+|+++|||||+|.+.++|..|+..|||..+.|+.|+|.++++
T Consensus 13 ~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 13 QTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 368999999999999999 7888888999999999999999999999999999999999999998765
No 5
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.74 E-value=5.3e-18 Score=90.54 Aligned_cols=66 Identities=21% Similarity=0.375 Sum_probs=62.3
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
+.++.++|..+|++||.| +|+.|+.|+.++||+||.|....+|+.|+.+|+|.+++|+.|.|+.|+
T Consensus 23 yRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 23 YRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 357889999999999999 899999999999999999999999999999999999999999999875
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.71 E-value=8.6e-17 Score=92.07 Aligned_cols=66 Identities=14% Similarity=0.265 Sum_probs=61.9
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++|+++|+.||.| +++.++.+++++|||||+|.+.++|.+|+..||+..+.+++|+|.++++
T Consensus 118 ~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p 186 (346)
T TIGR01659 118 DMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARP 186 (346)
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccc
Confidence 68999999999999999 7788888999999999999999999999999999999999999998764
No 7
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.69 E-value=1.2e-15 Score=69.44 Aligned_cols=59 Identities=22% Similarity=0.426 Sum_probs=53.6
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEE
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIH 62 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~ 62 (69)
++++++|+++|++||.+ .+..+ .++.++++|||.|.+.++|..|+..+||..+.|+.|+
T Consensus 9 ~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 9 DVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp TSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 57899999999999999 44444 7889999999999999999999999999999999885
No 8
>smart00361 RRM_1 RNA recognition motif.
Probab=99.69 E-value=5.5e-16 Score=71.19 Aligned_cols=59 Identities=22% Similarity=0.381 Sum_probs=52.4
Q ss_pred HHHHHHHhh----ccCce-E---EeeeCCC--CCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEE
Q 045845 6 SRDRESKTY----QLLRL-S---LLSKSLN--RDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64 (69)
Q Consensus 6 ~~~l~~~f~----~~g~i-~---~~~~~~~--~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~ 64 (69)
+++|+++|+ +||.+ . ++.++.+ +.++|++||.|.+.++|..|+..|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578889998 99999 3 4677766 8999999999999999999999999999999998763
No 9
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=2.4e-16 Score=86.90 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=61.1
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
.++.++|++.|.+||.| ++++|..|++++||+||.|.+.++|++||..+||..+.+|.|+...|.
T Consensus 73 eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 73 EIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred hcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 35778999999999999 999999999999999999999999999999999999999999987764
No 10
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=3.6e-16 Score=86.17 Aligned_cols=66 Identities=23% Similarity=0.365 Sum_probs=64.2
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++++.+|+..|.| ++++|+-+|++.||+||.|..+.+|++|+..|||..+..+.|+|++|+|
T Consensus 52 ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 52 NMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred ccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 68999999999999999 8999999999999999999999999999999999999999999999997
No 11
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.67 E-value=2.5e-15 Score=66.26 Aligned_cols=55 Identities=24% Similarity=0.329 Sum_probs=47.1
Q ss_pred HHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 9 RESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 9 l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
|.++|++||.| .+...+.. ++++||+|.+.++|..|+..|||..+.|++|+|++|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999 55554433 589999999999999999999999999999999876
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.67 E-value=9.4e-16 Score=92.49 Aligned_cols=65 Identities=18% Similarity=0.309 Sum_probs=61.0
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
++++++|+++|+.||.| +++.++.+++++|||||.|.+.++|..|+..+|+..++|+.|+|.++.
T Consensus 215 ~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 215 DLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred CCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 57899999999999999 788888889999999999999999999999999999999999998875
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.66 E-value=7.7e-16 Score=92.84 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=60.5
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
+++++++|+++|++||.| .++.++.+|+++|||||+|.+.++|++|+..+||..++|+.|+|...
T Consensus 117 ~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 117 FELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 467899999999999999 78889999999999999999999999999999999999999999753
No 14
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.65 E-value=2e-15 Score=86.56 Aligned_cols=66 Identities=17% Similarity=0.292 Sum_probs=59.7
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCC--eEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNG--RIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~--~~i~v~~a~~ 68 (69)
++++++|+++|++||.| .++.++.+++++|+|||+|.+.++|++|+..||+..+.+ ++|+|.++++
T Consensus 204 ~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 204 TITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred cccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCc
Confidence 67899999999999998 677888899999999999999999999999999998876 6888887764
No 15
>PLN03213 repressor of silencing 3; Provisional
Probab=99.64 E-value=1.4e-15 Score=89.70 Aligned_cols=63 Identities=13% Similarity=0.247 Sum_probs=56.9
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCH--HHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRD--EDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~--~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+++++++|...|+.||.| .++ +.+| ||||||+|... .++.+||..|||..|+|+.|+|..|+|
T Consensus 20 ydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 20 ESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 578999999999999999 455 5677 89999999976 689999999999999999999999986
No 16
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=3.1e-15 Score=83.36 Aligned_cols=65 Identities=18% Similarity=0.348 Sum_probs=61.0
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
.+++.+|++.|+.||+| +++.+..||+++|||||+|.+..++..|-...+|..|+|+.|-|.+.+
T Consensus 112 dT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 112 DTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred cccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 67899999999999999 889999999999999999999999999999999999999999887654
No 17
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.62 E-value=1.6e-14 Score=65.95 Aligned_cols=60 Identities=23% Similarity=0.373 Sum_probs=51.8
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEE
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIH 62 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~ 62 (69)
.++++++|.++|+.+|.+ .+..++. +.++|+|||+|.+.++|.+|+..+++..++|+.|+
T Consensus 8 ~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 8 PSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp TT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 367899999999999998 5666555 88999999999999999999999999999999875
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.61 E-value=9.9e-15 Score=85.67 Aligned_cols=66 Identities=21% Similarity=0.333 Sum_probs=61.0
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
.++++++|+++|++||.| .++.++.+|+++|||||+|.+.++|..|+..|||..+.|+.|+|.+++
T Consensus 196 ~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 196 FNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 368899999999999999 677788888999999999999999999999999999999999999864
No 19
>smart00360 RRM RNA recognition motif.
Probab=99.61 E-value=1.4e-14 Score=65.22 Aligned_cols=62 Identities=23% Similarity=0.435 Sum_probs=55.1
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEE
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~ 64 (69)
.+++++|+++|++||.+ .+..++.++.++|+||+.|.+.++|..|+..+++..+.|+.+.|+
T Consensus 7 ~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 7 DVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred ccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 46889999999999988 566666678899999999999999999999999999999998863
No 20
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.60 E-value=1.1e-14 Score=87.34 Aligned_cols=66 Identities=18% Similarity=0.271 Sum_probs=61.0
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
.++++++|.++|++||.| ++..++.+++++|||||.|.+.++|.+|+..+|+..+.|+.|+|.+++
T Consensus 10 ~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 10 PDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 368999999999999999 777888889999999999999999999999999999999999998764
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.60 E-value=1.4e-14 Score=85.87 Aligned_cols=66 Identities=17% Similarity=0.208 Sum_probs=61.1
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
.++++++|+++|+.||.| .++.++.+|.++|||||+|.+.++|..|+..|||..+.|+.|.|..+.
T Consensus 305 ~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 305 LYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 367999999999999999 677888899999999999999999999999999999999999998874
No 22
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=3.3e-15 Score=80.92 Aligned_cols=64 Identities=16% Similarity=0.223 Sum_probs=55.9
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
+.+..++|+++|++||.| .++.|+.+|+++||+||+|.+.+.|.+|+..-| -.|+||+-.++.|
T Consensus 22 w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA 88 (247)
T KOG0149|consen 22 WETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLA 88 (247)
T ss_pred cccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchh
Confidence 467889999999999999 899999999999999999999999999988444 5688888766654
No 23
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=4.9e-15 Score=83.47 Aligned_cols=65 Identities=26% Similarity=0.387 Sum_probs=56.7
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
|...+-||+..|++||.| .++.+ + .-++|||||+|++.++|++|-.+|||..+.||+|+|+.|..
T Consensus 106 FrFRdpDL~aMF~kfG~VldVEIIfN-E-RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 106 FRFRDPDLRAMFEKFGKVLDVEIIFN-E-RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred ccccCccHHHHHHhhCceeeEEEEec-c-CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 456788999999999999 55554 2 34689999999999999999999999999999999998764
No 24
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.59 E-value=1.5e-14 Score=86.86 Aligned_cols=65 Identities=15% Similarity=0.248 Sum_probs=59.7
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++|+++|++||.| +++.+ .+|.++|||||.|.+.++|.+|+..+||..++|++|.|.+|++
T Consensus 296 ~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~ 363 (562)
T TIGR01628 296 TVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQR 363 (562)
T ss_pred ccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccC
Confidence 57899999999999999 56666 6899999999999999999999999999999999999998864
No 25
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.3e-15 Score=82.33 Aligned_cols=65 Identities=26% Similarity=0.401 Sum_probs=61.8
Q ss_pred CCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 4 KASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+++.-|...|-+||.| .++.|.+++++|||+||+|...++|..||..+|+.++.|+.|+|.+|+|
T Consensus 22 VtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 22 VTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred HHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 5677899999999999 8999999999999999999999999999999999999999999999987
No 26
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=2.9e-14 Score=78.68 Aligned_cols=63 Identities=10% Similarity=0.179 Sum_probs=54.9
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+++++++|+++|+.||.| .++.++ .++|||||+|.+.+++..|+. |||..+.|+.|+|..++.
T Consensus 14 ~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 14 LKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 468999999999999999 455543 357999999999999999996 999999999999998763
No 27
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.8e-14 Score=83.71 Aligned_cols=64 Identities=20% Similarity=0.363 Sum_probs=58.9
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeC-CeEEEEEee
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWN-GRIIHVEKS 66 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~-~~~i~v~~a 66 (69)
.+.+++|.-+|++.|.| ++++|+.+|.+||||||.|.+.++|+.|++.||+++|. |+.|.|+.+
T Consensus 94 D~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 94 DVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred cccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 35789999999999999 99999999999999999999999999999999999875 788888765
No 28
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.8e-14 Score=75.35 Aligned_cols=61 Identities=28% Similarity=0.421 Sum_probs=53.7
Q ss_pred cCCHHHHHHHhhccCce--EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 3 GKASRDRESKTYQLLRL--SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
++++.+|+..|..||++ .++-. .+.|||||+|.++.+|+.|+..|+|..++|.+|+|+.+.
T Consensus 21 ~a~k~eLE~~F~~yG~lrsvWvAr----nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 21 RATKRELERAFSKYGPLRSVWVAR----NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CcchHHHHHHHHhcCcceeEEEee----cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 57889999999999999 33332 467999999999999999999999999999999999875
No 29
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.56 E-value=2e-14 Score=84.14 Aligned_cols=66 Identities=26% Similarity=0.372 Sum_probs=62.9
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
+++++++|..+|+..|.| +++.|+++|+++||+|++|.+.+++..|++.|||.++.|++|+|.++.
T Consensus 28 ~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 28 YEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred CcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccc
Confidence 568999999999999999 899999999999999999999999999999999999999999999875
No 30
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=5.7e-14 Score=70.48 Aligned_cols=65 Identities=15% Similarity=0.250 Sum_probs=57.1
Q ss_pred ccCCHHHHHHHhhccCce-EEe--eeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 2 IGKASRDRESKTYQLLRL-SLL--SKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~--~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
|.+++++|.++|++.|+| +++ .|+.+..+.|||||+|...++|..|++-++|..++.++|++.+.
T Consensus 46 fyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 46 FYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred eeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 457899999999999999 544 45666778999999999999999999999999999999998753
No 31
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.52 E-value=1.6e-13 Score=80.61 Aligned_cols=65 Identities=20% Similarity=0.209 Sum_probs=59.4
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
.++++++|+++|++||.| .++.++.+++++|||||+|.+.++|.+|+. ++|..+.|+.|.|..++
T Consensus 99 ~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 99 LKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence 367899999999999999 788888899999999999999999999997 99999999999987653
No 32
>smart00362 RRM_2 RNA recognition motif.
Probab=99.52 E-value=3e-13 Score=61.02 Aligned_cols=60 Identities=27% Similarity=0.456 Sum_probs=51.9
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEE
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~ 64 (69)
++++++|+++|.+||.+ .+..++ +.++|++|+.|.+.++|..|+..+++..+.|+++.|+
T Consensus 10 ~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 10 DVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred cCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 56889999999999999 333333 7788999999999999999999999999999998863
No 33
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.51 E-value=2.2e-13 Score=74.22 Aligned_cols=66 Identities=24% Similarity=0.402 Sum_probs=60.8
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
..+++++|.++|.+||.+ .+..++.++.++|+|||.|.+.+++..|+..+++..+.|++|.|..+.
T Consensus 125 ~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 125 YDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 368999999999999999 677777889999999999999999999999999999999999999854
No 34
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=4.9e-14 Score=71.34 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=58.8
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
.++++++...|..||.| ++-.|+.||..+||++|+|....+|+.|+..+||..+.|..|.|.++
T Consensus 83 EatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 83 EATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred chhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 35789999999999999 67778889999999999999999999999999999999999988764
No 35
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1.3e-13 Score=80.30 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=57.0
Q ss_pred CccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecCC
Q 045845 1 MIGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69 (69)
Q Consensus 1 ~~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~~ 69 (69)
|.++|++.|+++|++||.+ ++..- +.||||+|.+.++|.+|+..+||.+++|..|.|..|+|.
T Consensus 268 ~~~tTeE~lk~~F~~~G~veRVkk~------rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 268 MESTTEETLKKLFNEFGKVERVKKP------RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred chhhhHHHHHHHHHhccceEEeecc------cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 6789999999999999999 65433 459999999999999999999999999999999999973
No 36
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=1.3e-15 Score=80.12 Aligned_cols=64 Identities=22% Similarity=0.284 Sum_probs=59.0
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEe
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~ 65 (69)
+..++.||-..|++||.+ .++.|+.||+++||||+.|.++.+...|+..+||..+.|+.|+|.-
T Consensus 45 ~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 45 YELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 456888999999999998 7889999999999999999999999999999999999999999863
No 37
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.49 E-value=1.7e-13 Score=82.60 Aligned_cols=63 Identities=19% Similarity=0.296 Sum_probs=56.1
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeC-CeEEEEEee
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWN-GRIIHVEKS 66 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~-~~~i~v~~a 66 (69)
++++++|..+|+++|.| ++++| .+|+++|||||+|.+.++|+.|+..||+..+. ++.|.|..+
T Consensus 69 ~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 69 DLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 68999999999999999 77788 78999999999999999999999999999885 666666544
No 38
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.49 E-value=1.1e-13 Score=81.88 Aligned_cols=64 Identities=27% Similarity=0.364 Sum_probs=59.8
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEe
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~ 65 (69)
|++++++++.+|++||.| .++++.++|.++||+|++|.+.++|.+|+..|||.++-|+.|+|..
T Consensus 288 fNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 288 FNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred cCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEE
Confidence 689999999999999999 6777777999999999999999999999999999999999999874
No 39
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.48 E-value=5e-13 Score=79.36 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=54.0
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.+++++|..+|++||.| +++.+ .+|+|||+|.+.++|..|+..|||..+.|+.|+|..++.
T Consensus 287 ~vt~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 287 KVNCDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 47899999999999999 44444 258999999999999999999999999999999998753
No 40
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=7.4e-14 Score=80.15 Aligned_cols=64 Identities=16% Similarity=0.220 Sum_probs=59.6
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEe
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~ 65 (69)
|...++.|+..|.+||+| .+-||+.|++++||+||+|.-++.|+.|++.+||..++||.|+|..
T Consensus 123 fEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 123 FELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred EEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 456789999999999999 7889999999999999999999999999999999999999999864
No 41
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.44 E-value=1.7e-12 Score=70.99 Aligned_cols=61 Identities=5% Similarity=0.042 Sum_probs=52.5
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
.++++++|+++|+.+|.| .++.+ +...++|||+|.+.+.+..|+. |+|..+.+++|.|...
T Consensus 15 ~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 15 PKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 468999999999999999 55554 4456899999999999999996 9999999999988753
No 42
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=4.7e-13 Score=77.80 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=57.7
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCce-e--CCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETE-W--NGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~-~--~~~~i~v~~a~~ 68 (69)
.++|+||+.+|++||.| .+++|+.++.++|||||.|...++|.+|+..|+... + ...++.|++|+.
T Consensus 45 t~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~ 116 (510)
T KOG0144|consen 45 TASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADG 116 (510)
T ss_pred cccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccch
Confidence 46899999999999999 789999999999999999999999999999998864 3 346788887764
No 43
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=1.6e-12 Score=72.03 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=57.9
Q ss_pred CCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 4 KASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
+++.-|-.+|++||.+ ++++|..+.+++||+||.+.+.++|..||..|||..+.++.+.|++-
T Consensus 290 ~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 290 ADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred chHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 4556688999999999 89999999999999999999999999999999999999999999864
No 44
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.42 E-value=2.3e-12 Score=77.87 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=54.2
Q ss_pred ccCCHHHHHHHhhcc--Cce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQL--LRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~--g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++| |.| ++.. .++||||+|.+.++|.+|+..||+..+.|+.|+|.+++|
T Consensus 243 ~~~tee~L~~~F~~f~~G~I~rV~~------~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 243 TTTTEEIIEKSFSEFKPGKVERVKK------IRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred CCCCHHHHHHHHHhcCCCceEEEEe------ecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 468999999999999 999 5432 246999999999999999999999999999999999875
No 45
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.41 E-value=3.3e-13 Score=71.06 Aligned_cols=64 Identities=25% Similarity=0.344 Sum_probs=59.6
Q ss_pred CCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 4 KASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
++++.|.++|-+.|++ +++.++.++.++||||++|.+.++|+=|+..||...+.|++|+|..+.
T Consensus 21 vs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 21 VSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred HHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 4678899999999999 899999999999999999999999999999999999999999999775
No 46
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.41 E-value=1e-11 Score=56.16 Aligned_cols=61 Identities=25% Similarity=0.445 Sum_probs=52.7
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEE
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~ 64 (69)
.++++++..+|..+|.+ .+..++. +.++|++|+.|.+.++|..|+..+++..+.|+.+.|.
T Consensus 10 ~~~~~~i~~~~~~~g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 10 DVTEEDLRELFSKFGKVESVRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred ccCHHHHHHHHHhcCCEEEEEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 46889999999999998 4544433 3678999999999999999999999999999999876
No 47
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=5.7e-12 Score=69.90 Aligned_cols=59 Identities=17% Similarity=0.309 Sum_probs=52.8
Q ss_pred CCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 4 KASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++++.|++||+| ++..+ +||+||.|...+.|..||..+|+.++.|..+++...++
T Consensus 176 lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 176 LTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred ccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 6899999999999999 44443 58999999999999999999999999999999988765
No 48
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=5.4e-12 Score=75.30 Aligned_cols=65 Identities=15% Similarity=0.269 Sum_probs=56.6
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
|++...+|+.+|++||.+ .++. +..|+.+|||||.|....+|..|+..+|+..++|++|-|.+|-
T Consensus 127 f~~k~~dLk~vFs~~G~V~Ei~IP~-k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 127 FKCKKPDLKNVFSNFGKVVEIVIPR-KKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred cccCcHHHHHHHhhcceEEEEEccc-CCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 566778999999999999 5554 4456666999999999999999999999999999999998874
No 49
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=3.2e-12 Score=74.45 Aligned_cols=65 Identities=20% Similarity=0.249 Sum_probs=56.3
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCce-eCC--eEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETE-WNG--RIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~-~~~--~~i~v~~a~~ 68 (69)
..++.+++++|++||.| +++++ ..+.+|||+||.|...+.|..||+.+||.. +.| .++.|++|++
T Consensus 135 ~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADt 205 (510)
T KOG0144|consen 135 QCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADT 205 (510)
T ss_pred cccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEeccc
Confidence 46889999999999999 77776 469999999999999999999999999973 444 5789999875
No 50
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.34 E-value=1e-11 Score=73.82 Aligned_cols=66 Identities=18% Similarity=0.139 Sum_probs=54.8
Q ss_pred cCCHHHHHHHhhccCc--e-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeE------EEEEeecC
Q 045845 3 GKASRDRESKTYQLLR--L-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRI------IHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~--i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~------i~v~~a~~ 68 (69)
++++++|+++|+.||. + .+...+..+..+++|||+|.+.++|..|+..||+..+.++. |+|.+|++
T Consensus 405 ~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 405 SVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred CCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 6789999999999998 4 33222222335799999999999999999999999999885 99999986
No 51
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=2.8e-11 Score=58.98 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=55.4
Q ss_pred ccCCHHHHHHHhhccCceEEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
|+++.++..++|++||.|+-+.--.+...+|-|||.|++..+|.+|++.|+|..+.++.+.|-.-+
T Consensus 28 ~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 28 FKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred ccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 578999999999999999222333456678999999999999999999999999999988876543
No 52
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=6.7e-12 Score=66.61 Aligned_cols=65 Identities=22% Similarity=0.346 Sum_probs=54.7
Q ss_pred cCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.+.+.+|+++|.+||.| .+.+.+ ......||||+|+++.+|+.||..-+|..++|.+|+|+++..
T Consensus 17 diRekeieDlFyKyg~i~~ieLK~-r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 17 DIREKEIEDLFYKYGRIREIELKN-RPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred chhhccHHHHHhhhcceEEEEecc-CCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 35678999999999999 544432 233467999999999999999999999999999999998753
No 53
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=4.4e-12 Score=75.64 Aligned_cols=67 Identities=19% Similarity=0.430 Sum_probs=62.3
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
|+++.++|..+|+..|+| .++.++.++.+|||+||.|.-.+++++|+...++..+.|+.|+|..|++
T Consensus 15 ~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 15 FSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 578899999999999999 7888888899999999999999999999999999999999999988764
No 54
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.30 E-value=2.5e-11 Score=72.22 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=51.6
Q ss_pred HHHHHHhhccCce---EEeee---CCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 7 RDRESKTYQLLRL---SLLSK---SLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 7 ~~l~~~f~~~g~i---~~~~~---~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
++|+.+|++||.| .++.+ ..++...|++||.|.+.++|..|+..|||..+.|+.|.|.+..
T Consensus 434 edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 434 EDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYG 500 (509)
T ss_pred HHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeC
Confidence 5789999999999 44433 2335567999999999999999999999999999999998764
No 55
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.28 E-value=1.5e-11 Score=64.95 Aligned_cols=65 Identities=20% Similarity=0.212 Sum_probs=60.6
Q ss_pred cCCHHHHHHHhhccCce----EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 3 GKASRDRESKTYQLLRL----SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
++++..|.+.|+.||.+ .++.++.+|.++|++|+.|.+.+.+.+|+..+||..++.++|.|.++.
T Consensus 107 ~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 107 EVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred chhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 57888999999999999 788899999999999999999999999999999999999999999874
No 56
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=3.1e-11 Score=69.96 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=56.7
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
++++..|.+.|+++|++ ++..|. + +-||||+.|.++.+|.+|+..+|...+.|++|++.++.
T Consensus 9 ~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~ 73 (369)
T KOG0123|consen 9 DVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQ 73 (369)
T ss_pred cCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhc
Confidence 58999999999999999 666665 4 99999999999999999999999999999999998765
No 57
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.2e-11 Score=70.93 Aligned_cols=65 Identities=22% Similarity=0.332 Sum_probs=61.4
Q ss_pred CCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 4 KASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++||+-+|+.||.| .++.+..||.+.-|+||+|.+.+++++|--.+++.-|++++|.|.++++
T Consensus 251 TtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 251 TTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred ccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 4678999999999999 8999999999999999999999999999999999999999999998875
No 58
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.23 E-value=4.1e-11 Score=72.32 Aligned_cols=63 Identities=24% Similarity=0.450 Sum_probs=57.7
Q ss_pred HHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 6 SRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 6 ~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
..+|+.+|++||.| +++.+..+.-.+.|+||++...++|.+||..|+.++++|+.|.|..++.
T Consensus 419 AtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 419 ATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred hhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 46899999999999 8888877777899999999999999999999999999999999998763
No 59
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=1.2e-11 Score=68.77 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=59.1
Q ss_pred CCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 4 KASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
..+.+|...|-+||.| ++..|+.|+.++.|+||.|.+..+++.||..+||..|+.++++|..-+|
T Consensus 297 FgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRP 364 (371)
T KOG0146|consen 297 FGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 364 (371)
T ss_pred hccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCc
Confidence 3567888999999999 8888999999999999999999999999999999999999999986554
No 60
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.18 E-value=1.3e-10 Score=62.84 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=52.2
Q ss_pred HHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 8 DRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 8 ~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.|..+|++||.| .+... .+.+.+|-|||.|.+.+.|-.|++.|+|..+.|+.++|.+|++
T Consensus 29 sL~~LFsqfG~ildI~a~-kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 29 SLYLLFSQFGKILDISAF-KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred HHHHHHHhhCCeEEEEec-CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence 355599999999 54443 5788999999999999999999999999999999999998874
No 61
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.13 E-value=3.2e-10 Score=60.81 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=53.4
Q ss_pred CCHHHHHHHhhcc-Cce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 4 KASRDRESKTYQL-LRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 4 ~~~~~l~~~f~~~-g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
+.+.++..+|.++ |.+ ++-+++.||.++|||||+|.+.+.|..|-+.+|+.=+.++.+.+.+-
T Consensus 61 ~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 61 FFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred hhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 4567788888888 666 34367789999999999999999999999999999999998887654
No 62
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.11 E-value=2.3e-10 Score=64.22 Aligned_cols=58 Identities=28% Similarity=0.411 Sum_probs=51.7
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++.+|+.+|++||.+ .++++ ||||+.++...+..||+.|+|..++|..|+|+.+++
T Consensus 13 ~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 13 EATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred ccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 45788999999999999 66665 899999999999999999999999999999997764
No 63
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=2.6e-10 Score=65.93 Aligned_cols=64 Identities=19% Similarity=0.322 Sum_probs=57.5
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
+.+++||+..|+.||+| .+-..+..+.++||+|++|.+......|+..+|-..++|.-++|-.+
T Consensus 221 DLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 221 DLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred CccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 46899999999999999 66677778889999999999999999999999999999999988654
No 64
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=7.4e-11 Score=71.86 Aligned_cols=67 Identities=25% Similarity=0.304 Sum_probs=57.7
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
|..+..+++.+|+.||.+ +++.....+.++|||||.|..+.+|.+|+..|.++.+.|+++.+++|+.
T Consensus 623 FeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 623 FEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred hHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 345678999999999999 5555445677899999999999999999999999999999999998864
No 65
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=1.2e-09 Score=66.75 Aligned_cols=66 Identities=27% Similarity=0.390 Sum_probs=54.3
Q ss_pred ccCCHHHHHHHhhccCce-EE-eeeCCCC----CceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLRL-SL-LSKSLNR----DSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~-~~~~~~~----~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
|.++.+++..+|.+.|.| .+ +..+..+ .+.|||||+|.+.++|++|+..|+|+.++|+.|.|+++.
T Consensus 525 f~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 525 FDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred cccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 567889999999999999 22 2222222 245999999999999999999999999999999998875
No 66
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=1.2e-09 Score=61.06 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=52.7
Q ss_pred CCHHHHHHHhhccCce--EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeC---CeEEEEEeec
Q 045845 4 KASRDRESKTYQLLRL--SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWN---GRIIHVEKSK 67 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i--~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~---~~~i~v~~a~ 67 (69)
-+|+|++++|..||.+ -.+.....|.++||+||.|.+..+|+.||..|+|..-. ...+.|++++
T Consensus 31 q~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~AD 99 (371)
T KOG0146|consen 31 QSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFAD 99 (371)
T ss_pred ccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEecc
Confidence 4689999999999999 34444467899999999999999999999999997532 3567787775
No 67
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.02 E-value=3.1e-10 Score=62.63 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=56.7
Q ss_pred CCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEe
Q 045845 4 KASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~ 65 (69)
++++.|.+.|.+|-.- +++.++.+|+++||+||.|.+..++.+|+..+||..++.+.|+.+.
T Consensus 202 vnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 202 VNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 7888899999998766 8999999999999999999999999999999999999998887654
No 68
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.02 E-value=1.6e-09 Score=63.81 Aligned_cols=64 Identities=19% Similarity=0.259 Sum_probs=55.8
Q ss_pred ccCCHHHHHHHhh-ccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 2 IGKASRDRESKTY-QLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 2 ~~~~~~~l~~~f~-~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
+.+.+.+|++++. +-|.| .++.| .+|+++||+.|+|..++.+++|++.||.+++.|+.|.|+..
T Consensus 54 yd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 54 YDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred chhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 4566789999997 56888 55566 68999999999999999999999999999999999998753
No 69
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.00 E-value=9.2e-10 Score=61.86 Aligned_cols=58 Identities=33% Similarity=0.511 Sum_probs=51.0
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
..+.+++++.|++||++ .++. +|+||.|...++|..|++.||+.++.|++++|+.+.+
T Consensus 89 tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 89 TCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred cccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 34668999999999998 5544 4999999999999999999999999999999998754
No 70
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=5.7e-09 Score=60.75 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=53.0
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
+++..+|.+.|+.||.| ++..+. +| ++|| ||+|.+.++|.+|+..+||..+.++.|.|...
T Consensus 87 ~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 87 SIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLF 150 (369)
T ss_pred ccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeec
Confidence 46778999999999999 666653 45 8999 99999999999999999999999999888654
No 71
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.97 E-value=4.7e-10 Score=63.80 Aligned_cols=66 Identities=18% Similarity=0.310 Sum_probs=55.7
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+.++++.|+.+|++||.+ .++.++.++.++||+||.|.+.+...+++. ...+.++|+.|.+..|-|
T Consensus 16 w~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 16 WETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred ccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceeccC
Confidence 468899999999999999 888999999999999999998877777766 445778888887776643
No 72
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.95 E-value=7.4e-09 Score=57.24 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=57.9
Q ss_pred ccCCHHHHHHHhhccCce--EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLRL--SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
..|.++||+++|..||.+ ..+....+|.+.|.|-|.|...++|.+|+..+||..++|+.+++....
T Consensus 93 ~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 93 YGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred cCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 468899999999999877 455555789999999999999999999999999999999998887654
No 73
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.88 E-value=1.1e-08 Score=63.52 Aligned_cols=61 Identities=16% Similarity=0.290 Sum_probs=54.7
Q ss_pred cCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 3 GKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
++++.||..+|+.||.| .+.+.. ++|||||.+.+..+|.+|+..|+...+.++.|+|.++.
T Consensus 432 ~v~e~dL~~~feefGeiqSi~li~----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 432 NVTEQDLANLFEEFGEIQSIILIP----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred hhhHHHHHHHHHhcccceeEeecc----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 67899999999999999 665543 47899999999999999999999999999999998874
No 74
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.86 E-value=4.7e-09 Score=59.83 Aligned_cols=65 Identities=17% Similarity=0.372 Sum_probs=57.8
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++++..|.+||.| .++.|+.+.+++||+|+.|.+.+....++. ..-+.+.++.+.|..|-|
T Consensus 108 ~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 108 DTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred CCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 57889999999999988 788899999999999999999888887766 778899999999998765
No 75
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=1.9e-08 Score=57.66 Aligned_cols=62 Identities=18% Similarity=0.276 Sum_probs=49.5
Q ss_pred cCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHH-hhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIR-TLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~-~l~~~~~~~~~i~v~~a~~ 68 (69)
++++.+|+++|.+||.| .+.... .+++|||+|.....|+.|.. .+|...++|++|.|.++++
T Consensus 239 ~v~e~dIrdhFyqyGeirsi~~~~----~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 239 EVLEQDIRDHFYQYGEIRSIRILP----RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred chhHHHHHHHHhhcCCeeeEEeec----ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 46789999999999999 333332 24699999999998888765 5566789999999998765
No 76
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.81 E-value=1e-08 Score=56.43 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=56.3
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
.++.++++.+|+.+|.+ .++.++.+++++||+|++|.+.+....++. ||+..+.++.+.|..-
T Consensus 112 ~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 112 LVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred ccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 45666799999999999 788888888999999999999999999999 9999999999888743
No 77
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.76 E-value=6.6e-08 Score=56.67 Aligned_cols=61 Identities=13% Similarity=0.112 Sum_probs=52.7
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++.+.|..+|+.||.| +++.++. .-|.|.|.+...|+-|+..|+|+.+.|++|+|..++-
T Consensus 309 ~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 309 AVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 36788999999999999 4544432 4699999999999999999999999999999998874
No 78
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=1.6e-08 Score=55.01 Aligned_cols=60 Identities=30% Similarity=0.421 Sum_probs=52.2
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
..+.+.+++++|..||.+ .+.+.+ ||+||.|.+..+|..|+..+|+.++.+..+.|+.++
T Consensus 11 ~~~~~~d~E~~f~~yg~~~d~~mk~------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 11 YRARERDVERFFKGYGKIPDADMKN------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred CccchhHHHHHHhhccccccceeec------ccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 467889999999999999 555542 789999999999999999999999999888777765
No 79
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=2.5e-08 Score=59.82 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=49.8
Q ss_pred cCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEE
Q 045845 3 GKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIH 62 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~ 62 (69)
++++++|..+|+.||.| .+ ..+...+|..||+|.+..+|++|+++|++.++.|++|+
T Consensus 86 ~Vsn~~L~~~f~~yGeir~i---r~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 86 SVSNDTLLRIFGAYGEIREI---RETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCCHHHHHHHHHhhcchhhh---hcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 57899999999999999 42 23455679999999999999999999999999998876
No 80
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.57 E-value=4.3e-07 Score=54.17 Aligned_cols=65 Identities=15% Similarity=0.127 Sum_probs=56.6
Q ss_pred ccCCHHHHHHHhhccCceEEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
|+.|+++|.++|+..+.-.++....+|++.|-|||+|.+.++++.|++ .+...+..+-|.|-.+.
T Consensus 20 wsat~~ei~~Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 20 WSATEKEILDFFSNCGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred ccccHHHHHHHHhcCceeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 688999999999998755555666789999999999999999999998 88888888999988764
No 81
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.55 E-value=6e-07 Score=53.15 Aligned_cols=66 Identities=20% Similarity=0.302 Sum_probs=51.7
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++.++|+..|.+||.| .+......++...||||+|.+.+.++.++.+ +-..++++++.|+.-++
T Consensus 298 ~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 298 PDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred CCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 478899999999999999 3333332344449999999999999999984 46788999999886543
No 82
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.53 E-value=1.3e-06 Score=50.34 Aligned_cols=59 Identities=20% Similarity=0.324 Sum_probs=49.8
Q ss_pred HHHHHHHhhccCce--EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 6 SRDRESKTYQLLRL--SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 6 ~~~l~~~f~~~g~i--~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
+++|..--++||++ .++.+ .++.|.+-|.|.+.++|..||..++|..++|++|..+..+
T Consensus 290 kedl~eec~K~G~v~~vvv~d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYD---RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHHHhCCcceEEEec---cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 35677778899999 45554 4567999999999999999999999999999999877654
No 83
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.51 E-value=2.3e-06 Score=41.55 Aligned_cols=64 Identities=9% Similarity=0.153 Sum_probs=50.4
Q ss_pred CCHHHHHHHhhcc--Cce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeC----CeEEEEEeec
Q 045845 4 KASRDRESKTYQL--LRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWN----GRIIHVEKSK 67 (69)
Q Consensus 4 ~~~~~l~~~f~~~--g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~----~~~i~v~~a~ 67 (69)
.+.++|.+++... |.. .++.|..++.+.|||||.|.+++.+..-....+|..+. .+.+.|..|+
T Consensus 13 ~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAr 85 (97)
T PF04059_consen 13 YTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYAR 85 (97)
T ss_pred CCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhH
Confidence 3566666666542 444 89999999999999999999999999999999999876 4556776664
No 84
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=5.1e-07 Score=54.85 Aligned_cols=55 Identities=13% Similarity=0.151 Sum_probs=45.1
Q ss_pred HHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCC-eEEEE
Q 045845 8 DRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNG-RIIHV 63 (69)
Q Consensus 8 ~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~-~~i~v 63 (69)
-|.++|+++|++ .++.+.++| ++|+.|++|.+..+|+.|+..|||+.++- +...|
T Consensus 80 vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v 138 (698)
T KOG2314|consen 80 VLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFV 138 (698)
T ss_pred HHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceEEe
Confidence 477899999999 566665544 99999999999999999999999998864 34444
No 85
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.45 E-value=3.6e-07 Score=54.90 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=58.4
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
..++.++.+++..||++ .++.++.+|-++||+|.+|.+......|+..|||..+.++.+.|+.|-
T Consensus 300 ~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 300 YLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 35778899999999999 788888889999999999999999999999999999999999888663
No 86
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.43 E-value=8.6e-07 Score=52.71 Aligned_cols=61 Identities=20% Similarity=0.177 Sum_probs=52.1
Q ss_pred ccCCHHHHHHHhhccCce--EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 2 IGKASRDRESKTYQLLRL--SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
|+.|++.|++-|..+|.+ .-++ ++|+++| .|.|.++++|++|+..++|..++|+.|+|.+.
T Consensus 546 ~dfTWqmlrDKfre~G~v~yadim--e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 546 FDFTWQMLRDKFREIGHVLYADIM--ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccHHHHHHHHHhccceehhhhh--ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 567899999999999999 2223 3567776 89999999999999999999999999999863
No 87
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.43 E-value=7.1e-07 Score=55.45 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=55.6
Q ss_pred cCCHHHHHHHhhccCce---EEeeeC---CCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKS---LNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~---~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+++++.|...|+.||++ ++++.+ +....+-|+||.|.+..++++|+..|+|..+.+..+++-++++
T Consensus 185 sv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 185 SVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGKA 256 (877)
T ss_pred cccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccccc
Confidence 56889999999999999 666653 2355577999999999999999999999999999888877754
No 88
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.39 E-value=2.4e-06 Score=49.31 Aligned_cols=64 Identities=20% Similarity=0.236 Sum_probs=55.5
Q ss_pred cCCHHHHHHHhhccCce-----------EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 3 GKASRDRESKTYQLLRL-----------SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-----------~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
.+|.+++..+|+++|.| ++-. ...|+.+|=|.+.|...++...|+..|++..+.|+.|+|+.|+
T Consensus 145 DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYr-d~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAk 219 (382)
T KOG1548|consen 145 DITVDEFAEVMSKCGIIMRDPQTGEPKVKLYR-DNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAK 219 (382)
T ss_pred cccHHHHHHHHHhcceEeccCCCCCeeEEEEe-cCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhh
Confidence 46889999999999987 2323 3458889999999999999999999999999999999999875
No 89
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.37 E-value=7.9e-07 Score=48.70 Aligned_cols=63 Identities=6% Similarity=0.033 Sum_probs=50.8
Q ss_pred cCCHHHHHHHhhccCce-E-EeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 3 GKASRDRESKTYQLLRL-S-LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-~-~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
.++++-|.++|-+.|+| + .+.+-..++.+ |+||.|++.....-|+..+||..+.++.+.+..-
T Consensus 20 ~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 20 GVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 46888999999999999 3 33333445556 9999999999999999999999998887776643
No 90
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.34 E-value=3.8e-06 Score=50.77 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=48.2
Q ss_pred HHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEe
Q 045845 7 RDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65 (69)
Q Consensus 7 ~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~ 65 (69)
+|+.+..++||.+ ++-.|+.+ -|+.||.|++.+.|..|+.+|||.++.|+.|...+
T Consensus 468 edV~Eec~k~g~v~hi~vd~ns---~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~ 524 (549)
T KOG0147|consen 468 EDVIEECGKHGKVCHIFVDKNS---AGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKY 524 (549)
T ss_pred HHHHHHHHhcCCeeEEEEccCC---CceEEEecCcHHHHHHHHHHHhhhhhccceeEEEE
Confidence 4677777999999 77777542 38999999999999999999999999999998765
No 91
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.33 E-value=3.9e-06 Score=52.36 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=57.4
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEe
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~ 65 (69)
|.++-+||.++|.-|-.+ .+++.++.|+..|-|.|.|++.++|.+|...|++..|..+.+.+.+
T Consensus 877 f~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 877 FDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred ccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 578889999999999877 5666778899999999999999999999999999999999888764
No 92
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.32 E-value=2.8e-06 Score=49.23 Aligned_cols=57 Identities=14% Similarity=0.223 Sum_probs=44.8
Q ss_pred HHHhhccCce-EEeeeCCCC---Ccee--EEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 10 ESKTYQLLRL-SLLSKSLNR---DSHG--FGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 10 ~~~f~~~g~i-~~~~~~~~~---~~~g--~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
.++|++||.| +++-++.+. ...+ -.||.|...++|.+||...+|..++|+.|+..+.
T Consensus 138 ~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYG 200 (480)
T COG5175 138 HEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYG 200 (480)
T ss_pred hhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeecC
Confidence 4689999999 665555441 1122 2499999999999999999999999999987654
No 93
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.15 E-value=2.8e-06 Score=49.07 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=57.4
Q ss_pred cCCHHHHHHHhhccCce-----------EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 3 GKASRDRESKTYQLLRL-----------SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-----------~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
+++.+++.++|.++|.| .+-++++|+.++|-|.|.|.+...|+.|+.-+++..+.+..|+|..|.
T Consensus 77 ~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~ 152 (351)
T KOG1995|consen 77 SVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAE 152 (351)
T ss_pred cchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhh
Confidence 56788999999999988 355667899999999999999999999999999999999999988664
No 94
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.13 E-value=1.1e-06 Score=49.80 Aligned_cols=67 Identities=15% Similarity=0.262 Sum_probs=57.8
Q ss_pred CccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 1 MIGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 1 ~~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+++++.++|+.+|...|.+ +++.++.++..+|++++.|........++.. +...+.++.+.+...++
T Consensus 194 ~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 194 DFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred ccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCC
Confidence 4788999999999999988 7778888999999999999998888888886 78888888888876654
No 95
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.13 E-value=2.4e-05 Score=46.00 Aligned_cols=64 Identities=14% Similarity=0.042 Sum_probs=51.6
Q ss_pred cCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCC--eEEEEEeecCC
Q 045845 3 GKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNG--RIIHVEKSKST 69 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~--~~i~v~~a~~~ 69 (69)
.++-+-|..+....|++ +++--+.+| -.|.|+|.+.+.|++|...|||..|.. +.++|++|+||
T Consensus 133 pItvDVly~Icnp~GkVlRIvIfkkng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 133 PITVDVLYTICNPQGKVLRIVIFKKNG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred ccchhhhhhhcCCCCceEEEEEEeccc---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 45667788888899999 444333454 369999999999999999999998864 68999999986
No 96
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.11 E-value=5e-05 Score=42.02 Aligned_cols=65 Identities=22% Similarity=0.274 Sum_probs=47.4
Q ss_pred CCHHHHHHHhhccCce--EEee--eCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeC---CeEEEEEeecC
Q 045845 4 KASRDRESKTYQLLRL--SLLS--KSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWN---GRIIHVEKSKS 68 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i--~~~~--~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~---~~~i~v~~a~~ 68 (69)
+..-+|..+|..|--. ..++ ++...-.+-++|+.|.+..+|..|+..|||..++ +..++++.|++
T Consensus 46 vKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKS 117 (284)
T KOG1457|consen 46 VKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKS 117 (284)
T ss_pred cCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhc
Confidence 4456788888877433 2222 2222334589999999999999999999999886 56788888775
No 97
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.09 E-value=2.7e-06 Score=47.32 Aligned_cols=61 Identities=26% Similarity=0.340 Sum_probs=50.5
Q ss_pred HHHHHHhh-ccCce--EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 7 RDRESKTY-QLLRL--SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 7 ~~l~~~f~-~~g~i--~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
+++...++ +||.| ..+.++....-.|-.||.|...++|++|+..||+-.+.|++|...+.-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34555566 89999 446777777778999999999999999999999999999998877653
No 98
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.09 E-value=1.5e-05 Score=47.88 Aligned_cols=63 Identities=19% Similarity=0.160 Sum_probs=50.9
Q ss_pred ccCCHHHHHHHhhccCce----EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 2 IGKASRDRESKTYQLLRL----SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
|+++++||.++|+..-.+ .++.++ .+++.|-|||.|.+.+.+++|+. .|...+..+-|.|-.+
T Consensus 113 fscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 113 FSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred ccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehh
Confidence 689999999999976555 355554 46688999999999999999998 6667788888887654
No 99
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.96 E-value=5.8e-06 Score=45.24 Aligned_cols=55 Identities=29% Similarity=0.372 Sum_probs=47.0
Q ss_pred CCHHHHHHHhhccCce--EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEe
Q 045845 4 KASRDRESKTYQLLRL--SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i--~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~ 65 (69)
+++.+|.++|+++|.+ ++. ..+++||.|...+++..|+..|++..+.++.|.+..
T Consensus 111 ~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 111 VSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred hhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 3568999999999998 322 346899999999999999999999999999998743
No 100
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.89 E-value=0.00018 Score=35.22 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=41.1
Q ss_pred HHHHHHhhccCce-EEe--eeC-------CCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCe-EEEEEeec
Q 045845 7 RDRESKTYQLLRL-SLL--SKS-------LNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGR-IIHVEKSK 67 (69)
Q Consensus 7 ~~l~~~f~~~g~i-~~~--~~~-------~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~-~i~v~~a~ 67 (69)
..+-++|++||.| ... ... .......+-.+.|.++.+|.+||. .||..+.|. .+-|...+
T Consensus 20 ~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mvGV~~~~ 90 (100)
T PF05172_consen 20 NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMVGVKPCD 90 (100)
T ss_dssp HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEEEEEE-H
T ss_pred HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEEEEEEcH
Confidence 5688899999999 221 000 001123589999999999999999 999999885 44566553
No 101
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.79 E-value=0.00018 Score=34.20 Aligned_cols=51 Identities=22% Similarity=0.176 Sum_probs=36.4
Q ss_pred HHHHHhhccCc-e-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 8 DRESKTYQLLR-L-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 8 ~l~~~f~~~g~-i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
-|+.+...+|- + .+ . .+-|++.|.+++.|.+|...++|..+-|..|.|++.
T Consensus 22 RL~qLsdNCGGkVl~v-~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 22 RLRQLSDNCGGKVLSV-S-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp HHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred HHHHHhhccCCEEEEE-e-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 46777778764 3 33 2 257999999999999999999999999999999875
No 102
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.77 E-value=0.00021 Score=43.44 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=46.1
Q ss_pred HHHHHHhhccCce---EEeeeCC---CCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 7 RDRESKTYQLLRL---SLLSKSL---NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 7 ~~l~~~f~~~g~i---~~~~~~~---~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
++++..+++||.| .++.+.. ..-..|-.||+|.+.+++++|..+|+|..+.++.+...+-
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 4667778899998 2332211 1233578999999999999999999999999999887754
No 103
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.71 E-value=0.00014 Score=43.25 Aligned_cols=65 Identities=17% Similarity=0.102 Sum_probs=52.7
Q ss_pred cCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCe-EEEEEeecCC
Q 045845 3 GKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGR-IIHVEKSKST 69 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~-~i~v~~a~~~ 69 (69)
++++++++..|..-|.. +.- +.-++.+-++++.+.+.++|..|+..++.+.+.+. .++|++++++
T Consensus 425 svsee~lk~~f~~~g~~vkaf--kff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 425 SVSEEDLKNLFQEPGGQVKAF--KFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred ccchhHHHHhhhcCCceEEee--eecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 57899999999988765 221 12344566999999999999999999999998865 7899999875
No 104
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.71 E-value=0.00031 Score=41.52 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=50.2
Q ss_pred CCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 4 KASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++.+.|..+|..||.| ++++.+ .|-+.|++.+....++|+..||+..+-|.+|.|..++.
T Consensus 300 ~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 300 MNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred cchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 4567889999999999 444433 36799999999999999999999999999999887763
No 105
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.69 E-value=0.00062 Score=35.37 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=40.2
Q ss_pred HHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 7 RDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 7 ~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
.+|-..|..||.+ +++- +.-+|+|.+...|.+|+. ++|..+.|+.++|+.-
T Consensus 51 ~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LK 104 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLK 104 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-
T ss_pred HHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeC
Confidence 3677788899988 3322 247899999999999988 9999999999998753
No 106
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.61 E-value=0.00034 Score=34.48 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=28.2
Q ss_pred CCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCc
Q 045845 4 KASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDET 54 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~ 54 (69)
++.++|+..|++||.| .+-..+ |. .-|+|.|.+++.|+.|+..+.-.
T Consensus 13 ~~re~iK~~f~~~g~V~yVD~~~--G~--~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 13 TSREDIKEAFSQFGEVAYVDFSR--GD--TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp --HHHHHHHT-SS--EEEEE--T--T---SEEEEEESS---HHHHHHHHHHT
T ss_pred cCHHHHHHHHHhcCCcceEEecC--CC--CEEEEEECCcchHHHHHHHHHhc
Confidence 5678999999999999 664443 22 36899999999999888766433
No 107
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=97.51 E-value=0.0013 Score=35.52 Aligned_cols=60 Identities=17% Similarity=0.044 Sum_probs=42.4
Q ss_pred HHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhC--CceeCCeEEEEEeecCC
Q 045845 6 SRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLD--ETEWNGRIIHVEKSKST 69 (69)
Q Consensus 6 ~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~--~~~~~~~~i~v~~a~~~ 69 (69)
...|+++|..++.+ .+..-+.- +-..|.|.+.+.|.++...|+ +..+.|..+++.+++++
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sF----rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSF----RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTT----TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred HHHHHHHHHhcCCceEEEEcCCC----CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 36799999999988 43333322 347899999999999999999 99999999999887653
No 108
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.44 E-value=0.00052 Score=38.12 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=40.5
Q ss_pred cCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeC
Q 045845 3 GKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWN 57 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~ 57 (69)
++++++|+.+|+.|-.. .+-....+|. ..+|++|.+.+.|..|+..|+|.-+.
T Consensus 221 ~~~ed~l~~~~~~~~gf~~l~~~~~~g~--~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 221 NCTEDELKQLLSRYPGFHILKIRARGGM--PVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred CCCHHHHHHHHHhCCCceEEEEecCCCc--ceEeecHHHHHHHHHHHHHhhcceec
Confidence 67899999999999655 2222233343 57999999999999999999987653
No 109
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.34 E-value=0.001 Score=31.58 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=33.9
Q ss_pred HHHHHHHhhccCce--EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCC
Q 045845 6 SRDRESKTYQLLRL--SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDE 53 (69)
Q Consensus 6 ~~~l~~~f~~~g~i--~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~ 53 (69)
..||..+|++||.| ..+.+ .-|||...+.+.+..++..++-
T Consensus 22 ~~DI~qlFspfG~I~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 22 TSDIYQLFSPFGQIYVSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp HHHHHHHCCCCCCEEEEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred hhhHHHHhccCCcEEEEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 46899999999999 55554 2599999999999998887763
No 110
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.28 E-value=0.0015 Score=28.35 Aligned_cols=38 Identities=13% Similarity=0.243 Sum_probs=28.9
Q ss_pred HHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHH
Q 045845 7 RDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAI 48 (69)
Q Consensus 7 ~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai 48 (69)
+.+.++|.++|.| .+-.+ ....+.++.|.+..+|++|+
T Consensus 15 ~~vl~~F~~fGeI~~~~~~----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 15 EEVLEHFASFGEIVDIYVP----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHHHhcCCEEEEEcC----CCCcEEEEEECCHHHHHhhC
Confidence 5688899999999 43222 22358999999999999884
No 111
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.23 E-value=0.0029 Score=36.54 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=43.5
Q ss_pred HHHHHHhhccCce--EEeee-CCCCC-ceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEe
Q 045845 7 RDRESKTYQLLRL--SLLSK-SLNRD-SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65 (69)
Q Consensus 7 ~~l~~~f~~~g~i--~~~~~-~~~~~-~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~ 65 (69)
++++...++||.+ .++.. +.... -.--.||+|...++|.+|+..|||..++|+.++..+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 5677888999999 22222 21111 123589999999999999999999999999876554
No 112
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.94 E-value=0.0099 Score=27.37 Aligned_cols=56 Identities=20% Similarity=0.395 Sum_probs=32.1
Q ss_pred cCCHHHHHHHhhccCce------EE-eeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 3 GKASRDRESKTYQLLRL------SL-LSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i------~~-~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
+++..+|..++...+.+ .+ +.+ .|.|++.+. +.+..++..+++..+.|++++|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~-------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFD-------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-S-------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEee-------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 34566777777766544 22 222 389999975 5789999999999999999999875
No 113
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.91 E-value=0.0017 Score=38.27 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=48.1
Q ss_pred cCCHHHHHHHhhccCce-----EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEE
Q 045845 3 GKASRDRESKTYQLLRL-----SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-----~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v 63 (69)
=++++||.+.+..-|-- ++..++.+|+++||+++...+.....+.++.|...+++|..-.|
T Consensus 91 ~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 91 YTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred EeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 35677887777766633 56666788999999999999888888999999999999865433
No 114
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.85 E-value=0.0083 Score=33.21 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=44.9
Q ss_pred CCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeC-CeEEEEEeec
Q 045845 4 KASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWN-GRIIHVEKSK 67 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~-~~~i~v~~a~ 67 (69)
++.+.+..+|.+|... .+.+-+. ..+.+||+|.+...+..|...+++..+. ...+.|.+++
T Consensus 158 s~~e~l~~lf~qf~g~keir~i~~---~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 158 SESEMLSDLFEQFPGFKEIRLIPP---RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hhHHHHHHHHhhCcccceeEeccC---CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 4557788889988665 2222211 1378999999988899999999999877 6777777664
No 115
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.79 E-value=0.002 Score=38.37 Aligned_cols=64 Identities=16% Similarity=0.091 Sum_probs=49.4
Q ss_pred ccCCHHHHHHHhhccCce------EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 2 IGKASRDRESKTYQLLRL------SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i------~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
++.+.+||..+|..|-.- +++.+ ..|++.|-+||+|.+.+.|..|....+.+..+.+-|+|-.+
T Consensus 290 y~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 290 YEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred hhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 356778899988877532 55554 56899999999999999999998878777667787877543
No 116
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.74 E-value=0.0081 Score=34.79 Aligned_cols=49 Identities=10% Similarity=0.039 Sum_probs=38.5
Q ss_pred HHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeE
Q 045845 7 RDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRI 60 (69)
Q Consensus 7 ~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~ 60 (69)
.-+..+|+++|.| +.+.. .+| -|-+|.|.+..+|++||. .||..|+|..
T Consensus 211 s~vL~~F~~cG~Vvkhv~~-~ng---NwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 211 SIVLNLFSRCGEVVKHVTP-SNG---NWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred hHHHHHHHhhCeeeeeecC-CCC---ceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 3467899999999 43332 233 389999999999999999 9999998854
No 117
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.73 E-value=0.014 Score=26.20 Aligned_cols=42 Identities=12% Similarity=0.095 Sum_probs=32.1
Q ss_pred cCCHHHHHHHhhcc----Cce--EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhh
Q 045845 3 GKASRDRESKTYQL----LRL--SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTL 51 (69)
Q Consensus 3 ~~~~~~l~~~f~~~----g~i--~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l 51 (69)
+++.++++.+|..| ++. ..+-|. -|=+.|.+.+.|.+|+..|
T Consensus 15 ~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 15 ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 45779999999998 555 444442 3779999999999998754
No 118
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.51 E-value=0.0009 Score=38.79 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=40.7
Q ss_pred HHhhccCce-EEeeeCCC----CCc-eeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEe
Q 045845 11 SKTYQLLRL-SLLSKSLN----RDS-HGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65 (69)
Q Consensus 11 ~~f~~~g~i-~~~~~~~~----~~~-~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~ 65 (69)
..|.+||.+ +++..+.+ +.. .--++|+|...++|..||..++|...+|+.++..+
T Consensus 99 eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~ 159 (327)
T KOG2068|consen 99 EYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASL 159 (327)
T ss_pred ccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhh
Confidence 368889999 66665533 111 12389999999999999999999999988765543
No 119
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=96.41 E-value=0.027 Score=25.57 Aligned_cols=55 Identities=13% Similarity=0.195 Sum_probs=44.0
Q ss_pred cCCHHHHHHHhhccCceEEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEE
Q 045845 3 GKASRDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v 63 (69)
.++-++++..+.+|+-..++.++ + | -||.|.+..+|+++....+|..+-..++.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDRIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcceEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46778999999999877665553 2 2 589999999999999999999887776543
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.89 E-value=0.0037 Score=40.24 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=51.6
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
|.-+.+.++.+++..|.+ .++. ...|+++|.+++.|.+..++.++....+...+..+.+.|..++|
T Consensus 746 f~gt~e~~k~l~~~~gn~~~~~~vt-~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 746 FQGTKEELKSLASKTGNVTSLRLVT-VRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred CCCchHHHHhhccccCCccccchhh-hhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 455788999999999988 3333 35699999999999999999998887777777666666665443
No 121
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.81 E-value=0.015 Score=37.97 Aligned_cols=60 Identities=10% Similarity=0.192 Sum_probs=48.2
Q ss_pred CHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCC--eEEEEEeecC
Q 045845 5 ASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNG--RIIHVEKSKS 68 (69)
Q Consensus 5 ~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~--~~i~v~~a~~ 68 (69)
....+.+.|..||++ .+-.+. ...|+++.|.+...++.|+..+.|..+++ ++++|.++.+
T Consensus 468 p~~~l~r~fd~fGpir~Idy~h----gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 468 PVSRLNREFDRFGPIRIIDYRH----GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred hHHHHHHHhhccCcceeeeccc----CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 346788999999999 554442 34799999999999999999999999986 5677777653
No 122
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.36 E-value=0.11 Score=31.31 Aligned_cols=49 Identities=18% Similarity=0.102 Sum_probs=36.5
Q ss_pred ccCCHHHHHHHhhcc-----CceEEee-eCCCCCceeEEEEEEcCHHHHHHHHHh
Q 045845 2 IGKASRDRESKTYQL-----LRLSLLS-KSLNRDSHGFGFLSLDRDEDADAAIRT 50 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~-----g~i~~~~-~~~~~~~~g~~fv~~~~~~~a~~ai~~ 50 (69)
|+.++.++.++|.+- |...++. .+-+|+..|-+|+.|...++|+.|+..
T Consensus 171 fdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 171 FDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred CCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH
Confidence 567889999999632 2222222 234688899999999999999999983
No 123
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.08 E-value=0.049 Score=33.22 Aligned_cols=58 Identities=29% Similarity=0.302 Sum_probs=42.4
Q ss_pred cCCHHHHHHHhhccCc--e-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCc-eeCCeEEEEEee
Q 045845 3 GKASRDRESKTYQLLR--L-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDET-EWNGRIIHVEKS 66 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~--i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~-~~~~~~i~v~~a 66 (69)
+++.++++.+|...-. - .++.. .||+|+.+++..++.+|+..++|. .+.|+++.+..+
T Consensus 12 ~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 12 QVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 3567888888875311 1 23332 379999999999999999999997 577888776543
No 124
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.60 E-value=0.032 Score=34.17 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=43.7
Q ss_pred CHHHHHHHhhccCce--EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 5 ASRDRESKTYQLLRL--SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 5 ~~~~l~~~f~~~g~i--~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+.++|..+|.+||.| .-+.+ +.-.|.|+|....+|-.|-. .++..++++-|+|.+-++
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~-----~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDY-----SSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hHhhhhhhhhhcCccccccccC-----chhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 457899999999999 22222 13468999998888866644 788999999999987654
No 125
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.48 E-value=0.015 Score=32.95 Aligned_cols=57 Identities=11% Similarity=0.056 Sum_probs=42.4
Q ss_pred CCHHHHHHHhhccCce-EEeeeCCCCC----------ce----eEEEEEEcCHHHHHHHHHhhCCceeCCeE
Q 045845 4 KASRDRESKTYQLLRL-SLLSKSLNRD----------SH----GFGFLSLDRDEDADAAIRTLDETEWNGRI 60 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i-~~~~~~~~~~----------~~----g~~fv~~~~~~~a~~ai~~l~~~~~~~~~ 60 (69)
++..-|+.+|+.||.| ++-..+++.. .. .-|.|+|.+-..|.++...||+..|+|+.
T Consensus 86 m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 86 MDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGKK 157 (278)
T ss_pred cCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 3556789999999999 5555544311 11 23778899889999999999999999864
No 126
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.22 E-value=0.37 Score=30.02 Aligned_cols=49 Identities=8% Similarity=0.108 Sum_probs=34.4
Q ss_pred cCCHHHHHHHhhccCceEEeee--CC---CCCcee---EEEEEEcCHHHHHHHHHhh
Q 045845 3 GKASRDRESKTYQLLRLSLLSK--SL---NRDSHG---FGFLSLDRDEDADAAIRTL 51 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i~~~~~--~~---~~~~~g---~~fv~~~~~~~a~~ai~~l 51 (69)
.++++.|...|..||.+.+-+. .. --.++| |.|+.|++....+.-+.++
T Consensus 270 dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 270 DITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 5789999999999999933222 11 122356 9999999877777655544
No 127
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=94.17 E-value=0.21 Score=22.41 Aligned_cols=33 Identities=9% Similarity=-0.006 Sum_probs=20.9
Q ss_pred HHHHHHhhccCce--EEeeeCCCCCceeEEEEEEc
Q 045845 7 RDRESKTYQLLRL--SLLSKSLNRDSHGFGFLSLD 39 (69)
Q Consensus 7 ~~l~~~f~~~g~i--~~~~~~~~~~~~g~~fv~~~ 39 (69)
.+|+.+|+..|.| -.+....+...+-.|=+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~eS~~~~~~GGvV~e 43 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYESDEDRLTGGVVME 43 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccccCCCeEeccEEEe
Confidence 5799999999999 33333444444444445544
No 128
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=93.90 E-value=0.32 Score=26.78 Aligned_cols=48 Identities=21% Similarity=0.341 Sum_probs=39.8
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWN 57 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~ 57 (69)
+-+.+||+++.-..|.+ .+-.| |.+.|+|-..+++.=|++.|+...+.
T Consensus 126 SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 126 SGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred CCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 45789999999999999 33333 58999999999999999999877654
No 129
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.76 E-value=0.24 Score=31.02 Aligned_cols=48 Identities=15% Similarity=0.335 Sum_probs=37.8
Q ss_pred EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCC----eEEEEEeec
Q 045845 20 SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNG----RIIHVEKSK 67 (69)
Q Consensus 20 ~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~----~~i~v~~a~ 67 (69)
.++.|-.+...-|||||.|-++..+.....+.||..|.. +.+.+.+|+
T Consensus 420 YLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 420 YLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred EeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 677776777888999999999999999999999987642 344555554
No 130
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.38 E-value=0.083 Score=33.44 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=41.9
Q ss_pred CHHHHHHHhhccCc-e-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCcee---CCeEEEEEeec
Q 045845 5 ASRDRESKTYQLLR-L-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEW---NGRIIHVEKSK 67 (69)
Q Consensus 5 ~~~~l~~~f~~~g~-i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~---~~~~i~v~~a~ 67 (69)
|..+|+.++++-|. | ..-+| +.+..|||.|.+.++|.....+|||..| +.+.|.+.+..
T Consensus 457 TlgQLkelL~rtgg~Vee~WmD----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 457 TLGQLKELLGRTGGNVEEFWMD----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred hHHHHHHHHhhccCchHHHHHH----HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 56788999985544 4 22222 3456799999999999999999999876 34556555543
No 131
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.08 E-value=0.14 Score=29.20 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=39.4
Q ss_pred cCCHHHHHHHhhccCce--EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhC
Q 045845 3 GKASRDRESKTYQLLRL--SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLD 52 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~ 52 (69)
.++.+.+...|+.||++ .++..-..+++.+-+++.|.+...+..|+..++
T Consensus 42 ~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 42 GASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred hhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 45778899999999999 333333567888889999998888888888664
No 132
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=93.00 E-value=0.015 Score=37.70 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=39.4
Q ss_pred CCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCce
Q 045845 4 KASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETE 55 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~ 55 (69)
+++.+|...|+.+|.+ .+..-..+++.+|.||+.|..++++.+|+...+++.
T Consensus 679 ~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~ 733 (881)
T KOG0128|consen 679 MSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCF 733 (881)
T ss_pred hcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhh
Confidence 4567888889988877 222234568889999999999999999887665543
No 133
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=92.06 E-value=0.096 Score=31.89 Aligned_cols=48 Identities=10% Similarity=0.028 Sum_probs=34.1
Q ss_pred HHHHHHhhccCce--EEeeeC----CC--CC--------ceeEEEEEEcCHHHHHHHHHhhCCc
Q 045845 7 RDRESKTYQLLRL--SLLSKS----LN--RD--------SHGFGFLSLDRDEDADAAIRTLDET 54 (69)
Q Consensus 7 ~~l~~~f~~~g~i--~~~~~~----~~--~~--------~~g~~fv~~~~~~~a~~ai~~l~~~ 54 (69)
+.|.++|+.+|.| .-++.+ .+ +. .+-+|+|+|...+.|.+|...++..
T Consensus 246 enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 246 ENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred HHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 5789999999999 223333 11 11 2467999999999999998866543
No 134
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.44 E-value=0.28 Score=32.40 Aligned_cols=60 Identities=20% Similarity=0.151 Sum_probs=46.4
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCcee--CCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEW--NGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~--~~~~i~v~~a~~ 68 (69)
+.+...|..+++.||.+ ..+.+ . -.+.|.|...+.|..|+.+++|.++ -|-+.+|.+|+.
T Consensus 309 ~~tSssL~~l~s~yg~v~s~wtlr~-~-----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 309 NLTSSSLATLCSDYGSVASAWTLRD-L-----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred cchHHHHHHHHHhhcchhhheeccc-c-----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 45667889999999998 33232 2 3689999999999999999999864 355678888764
No 135
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=91.31 E-value=0.69 Score=28.89 Aligned_cols=45 Identities=9% Similarity=0.046 Sum_probs=38.7
Q ss_pred CHHHHHHHhh-ccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHH
Q 045845 5 ASRDRESKTY-QLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIR 49 (69)
Q Consensus 5 ~~~~l~~~f~-~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~ 49 (69)
+.++|-.+++ -||.| -+-.|++-+.++|-|-|.|.+...-.+||.
T Consensus 383 ~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 383 TAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred hHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 5678999998 69988 677787889999999999999888888886
No 136
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=91.17 E-value=0.55 Score=28.57 Aligned_cols=61 Identities=11% Similarity=0.037 Sum_probs=40.5
Q ss_pred cCCHHHHHHHhhccCce-EEeeeCCC-----CCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEE
Q 045845 3 GKASRDRESKTYQLLRL-SLLSKSLN-----RDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-~~~~~~~~-----~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~ 64 (69)
+++.++++.+|+..|.| .+...+.- .-..-.|||.|.+...+..|-. |-++.+-++.|-|-
T Consensus 18 sat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 18 SATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred hhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 46778999999999999 32222211 2234579999988766665544 77777777665443
No 137
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.61 E-value=1.6 Score=23.17 Aligned_cols=51 Identities=8% Similarity=0.027 Sum_probs=34.3
Q ss_pred HHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEE
Q 045845 8 DRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64 (69)
Q Consensus 8 ~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~ 64 (69)
.+...++.||+| .+... .+--|.|.|.+..+|=.|+.+++. ..-|..+.++
T Consensus 106 sV~~~Ls~fGpI~SVT~c-----GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 106 SVIQRLSVFGPIQSVTLC-----GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred HHHHHHHhcCCcceeeec-----CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 455567889999 44222 123589999999999999988875 3344444443
No 138
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=89.93 E-value=0.23 Score=32.27 Aligned_cols=62 Identities=11% Similarity=-0.052 Sum_probs=44.6
Q ss_pred cCCHHHHHHHhhccCce--EEe-eeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEE
Q 045845 3 GKASRDRESKTYQLLRL--SLL-SKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVE 64 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i--~~~-~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~ 64 (69)
.+++.++-+.|...-.+ .+. ...-+++-++.|||.|.+.+++..|+...+.+.+..+.|+|.
T Consensus 445 ~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 445 MTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred cccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 34566777788776555 222 223467778999999999888888877677677777888886
No 139
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.15 E-value=1.8 Score=21.66 Aligned_cols=51 Identities=10% Similarity=0.045 Sum_probs=35.8
Q ss_pred HHHHHHHhhccCce----EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCC
Q 045845 6 SRDRESKTYQLLRL----SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNG 58 (69)
Q Consensus 6 ~~~l~~~f~~~g~i----~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~ 58 (69)
.++|..+.+.+-.. +++++ ...++=.+.+.|.+...|..--..+||..+..
T Consensus 27 ~d~l~~f~~~~~~~i~~~riird--~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 27 SDFLLFFGAPFREDIEHIRIIRD--GTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred HHHHHHhhhcccccEEEEEEeeC--CCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34555555555333 55554 33456789999999999999999999997764
No 140
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=84.87 E-value=1.9 Score=19.83 Aligned_cols=57 Identities=11% Similarity=0.075 Sum_probs=37.7
Q ss_pred HHHHHHhhccCce----EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 7 RDRESKTYQLLRL----SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 7 ~~l~~~f~~~g~i----~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
++|.+.|...|-- +.+..+.++.+.-.-+|+.....+... .|+-..+++.++.|+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 4678888888844 555555666666778888865433332 45656778888887753
No 141
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=82.64 E-value=1.7 Score=27.78 Aligned_cols=51 Identities=16% Similarity=0.185 Sum_probs=31.9
Q ss_pred CCHHHHHHHhhc--cC-ce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCc--eeCCeEEE
Q 045845 4 KASRDRESKTYQ--LL-RL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDET--EWNGRIIH 62 (69)
Q Consensus 4 ~~~~~l~~~f~~--~g-~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~--~~~~~~i~ 62 (69)
+..++++.+|.. +- .| .-..++ =||+|.+..||+.|-..|... ++.|++|.
T Consensus 187 tp~e~Vk~lf~~encPk~iscefa~N~n--------WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 187 TPIEVVKALFKGENCPKVISCEFAHNDN--------WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred ChHHHHHHHhccCCCCCceeeeeeecCc--------eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 345788888865 22 22 222222 489999999999988766432 45566553
No 142
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=82.20 E-value=4.9 Score=20.26 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=24.9
Q ss_pred cCCHHHHHHHhhccCce--EEeeeCCCCCceeEEEEEEcC-HHHHHHHHH
Q 045845 3 GKASRDRESKTYQLLRL--SLLSKSLNRDSHGFGFLSLDR-DEDADAAIR 49 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~g~~fv~~~~-~~~a~~ai~ 49 (69)
..+.+.|.+.|..|.++ +.+.++ .-+.|++.|.|.+ -.-...|+.
T Consensus 28 g~~~~~l~~~l~~f~p~kv~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 28 GMSNEELLDKLAEFNPLKVKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp ---SHHHHHHHHH---SEEEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred ccCHHHHHHHHHhcCCceeEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 35667899999999888 555543 3578999999975 333334443
No 143
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=81.14 E-value=4.1 Score=21.96 Aligned_cols=28 Identities=11% Similarity=0.115 Sum_probs=23.4
Q ss_pred eeEEEEEEcCHHHHHHHHHhhCCceeCC
Q 045845 31 HGFGFLSLDRDEDADAAIRTLDETEWNG 58 (69)
Q Consensus 31 ~g~~fv~~~~~~~a~~ai~~l~~~~~~~ 58 (69)
-.-||+.|.+.+++..-...++|+.+.+
T Consensus 55 ~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 55 YSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp -EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred ceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 4569999999999999999999988754
No 144
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=77.10 E-value=7.5 Score=21.41 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=29.6
Q ss_pred eEEEEEEcCHHHHHHHHHhhCCceeCCe-EEEEEeecC
Q 045845 32 GFGFLSLDRDEDADAAIRTLDETEWNGR-IIHVEKSKS 68 (69)
Q Consensus 32 g~~fv~~~~~~~a~~ai~~l~~~~~~~~-~i~v~~a~~ 68 (69)
+...+.|.+.+.+..|...+++..+.|+ .++.-++++
T Consensus 52 rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 52 RRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred ceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 4567889999999999999999999988 666666553
No 145
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=76.17 E-value=6.2 Score=17.94 Aligned_cols=58 Identities=9% Similarity=0.119 Sum_probs=36.7
Q ss_pred HHHHHHhhccCce----EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 7 RDRESKTYQLLRL----SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 7 ~~l~~~f~~~g~i----~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
++|.+.|...|-- ..+..+.++.+...-||+.....+ ....++=..+.+.+++|+..+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCC
Confidence 5677778777743 444444456666778888865443 233455566778888887554
No 146
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=73.88 E-value=8 Score=18.16 Aligned_cols=26 Identities=23% Similarity=0.512 Sum_probs=21.5
Q ss_pred ceeEEEEEEcCHHHHHHHHHhhCCce
Q 045845 30 SHGFGFLSLDRDEDADAAIRTLDETE 55 (69)
Q Consensus 30 ~~g~~fv~~~~~~~a~~ai~~l~~~~ 55 (69)
-+||-||+-.+..+...|+..+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 57999999999999999998877653
No 147
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=73.69 E-value=2.3 Score=24.69 Aligned_cols=52 Identities=12% Similarity=-0.052 Sum_probs=34.9
Q ss_pred HHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCC
Q 045845 7 RDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNG 58 (69)
Q Consensus 7 ~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~ 58 (69)
.+...++..+|.. .+........++|++++.|...+.+..++.........+
T Consensus 103 ~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~ 157 (285)
T KOG4210|consen 103 SEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDG 157 (285)
T ss_pred ccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcccccc
Confidence 3445566667755 333334567788999999999999999888444334443
No 148
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=71.34 E-value=4.3 Score=16.22 Aligned_cols=15 Identities=0% Similarity=-0.068 Sum_probs=9.2
Q ss_pred cCCHHHHHHHhhccC
Q 045845 3 GKASRDRESKTYQLL 17 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g 17 (69)
.+++++|++.|.+.+
T Consensus 20 Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIK 34 (36)
T ss_dssp ---HHHHHHHHHCS-
T ss_pred cCCHHHHHHHHHHhc
Confidence 467788999888764
No 149
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=70.69 E-value=7.2 Score=22.65 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=17.4
Q ss_pred EEEEEcCHHHHHHHHHhhCCc
Q 045845 34 GFLSLDRDEDADAAIRTLDET 54 (69)
Q Consensus 34 ~fv~~~~~~~a~~ai~~l~~~ 54 (69)
|||.|.+..+|+.+++.+...
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~ 21 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK 21 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC
Confidence 699999999999998865544
No 150
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=70.07 E-value=1.3 Score=29.68 Aligned_cols=60 Identities=7% Similarity=0.033 Sum_probs=43.6
Q ss_pred CCHHHHHHHhhccCce-EE-eeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEE
Q 045845 4 KASRDRESKTYQLLRL-SL-LSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i-~~-~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v 63 (69)
+++.+|+..|..+|.+ .+ +..+.-+...-++|+.|.+.+.+.+|...+.+-.|....+++
T Consensus 384 l~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 384 LTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred hhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 5678899999999999 33 222333455578999999999888888888877665444333
No 151
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=68.14 E-value=15 Score=18.93 Aligned_cols=35 Identities=31% Similarity=0.383 Sum_probs=26.1
Q ss_pred ceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEe
Q 045845 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65 (69)
Q Consensus 30 ~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~ 65 (69)
...+-++.+.+.. ...++..+.+..+.++++.|..
T Consensus 25 ~~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~ 59 (145)
T PF13689_consen 25 SSPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRR 59 (145)
T ss_pred CCCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEE
Confidence 3456777776544 5667888988999999998874
No 152
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=58.84 E-value=42 Score=20.93 Aligned_cols=62 Identities=16% Similarity=0.103 Sum_probs=37.1
Q ss_pred ccCCHHHHHHHhhccCce--EEeeeCCCCCceeEEEEE--Ec-CHHHHHHHHHhhCCce--eCCeEEEE
Q 045845 2 IGKASRDRESKTYQLLRL--SLLSKSLNRDSHGFGFLS--LD-RDEDADAAIRTLDETE--WNGRIIHV 63 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~g~~fv~--~~-~~~~a~~ai~~l~~~~--~~~~~i~v 63 (69)
++++.+++.+-+..|.++ +....+..-...+..++. |. ++++..+++..+.... ..++.|-|
T Consensus 306 lGi~~~~i~~~l~~~~~~~gR~~~~r~~~~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~~~~~r~i~V 374 (479)
T PRK14093 306 AGADLALAALALSQVQPAAGRGVRHTLEVGGGEATLIDESYNANPASMAAALGVLGRAPVGPQGRRIAV 374 (479)
T ss_pred cCCCHHHHHHHHHhCCCcCCcceEEEeecCCCCEEEEECCCCCCHHHHHHHHHHHHhhhccCCCCEEEE
Confidence 357788888888888655 221111100012467888 75 6888888988887543 23455444
No 153
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=58.69 E-value=17 Score=16.41 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=20.4
Q ss_pred EEEEEEcCHHHHHHHHHhhCCceeCCe
Q 045845 33 FGFLSLDRDEDADAAIRTLDETEWNGR 59 (69)
Q Consensus 33 ~~fv~~~~~~~a~~ai~~l~~~~~~~~ 59 (69)
+.++.|.+..+|.++-..|....+..+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 578999999988888877776555443
No 154
>PF15063 TC1: Thyroid cancer protein 1
Probab=57.05 E-value=11 Score=17.69 Aligned_cols=17 Identities=0% Similarity=-0.334 Sum_probs=14.6
Q ss_pred cCCHHHHHHHhhccCce
Q 045845 3 GKASRDRESKTYQLLRL 19 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i 19 (69)
+++...|+++|.+-|..
T Consensus 36 ~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 36 NVNLDQLQRLFQKSGDK 52 (79)
T ss_pred ccCHHHHHHHHHHccch
Confidence 57888999999998876
No 155
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=54.77 E-value=58 Score=21.34 Aligned_cols=35 Identities=6% Similarity=0.106 Sum_probs=29.3
Q ss_pred eEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 32 g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
.|.||+.+. ..+...+..|++..+.|+.+.|+.++
T Consensus 527 ~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 527 SHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred CceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 478999974 56888899999999999999988764
No 156
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.86 E-value=54 Score=20.67 Aligned_cols=40 Identities=8% Similarity=-0.076 Sum_probs=29.9
Q ss_pred HHHHHHHhhccCce--EEeeeCCCCCceeEEEEEEcCHHHHHHHHHh
Q 045845 6 SRDRESKTYQLLRL--SLLSKSLNRDSHGFGFLSLDRDEDADAAIRT 50 (69)
Q Consensus 6 ~~~l~~~f~~~g~i--~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~ 50 (69)
.+||.+.|+.|+.- .+.|--. -.++..|.+...|..|+..
T Consensus 405 teDll~~f~~yq~kgfdIkWvDd-----thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 405 TEDLLKAFETYQNKGFDIKWVDD-----THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cHHHHHHHHHhhcCCceeEEeec-----ceeEEeecchHHHHHHhhc
Confidence 46889999999766 4444322 3699999998888888873
No 157
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=52.61 E-value=32 Score=17.71 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=24.4
Q ss_pred CccCCHHHHHHHhhccCce--------EEeeeCCCCCceeEEEEEEcCHHHH
Q 045845 1 MIGKASRDRESKTYQLLRL--------SLLSKSLNRDSHGFGFLSLDRDEDA 44 (69)
Q Consensus 1 ~~~~~~~~l~~~f~~~g~i--------~~~~~~~~~~~~g~~fv~~~~~~~a 44 (69)
|-+++.++|++-++..-.. .+-..-..|++.|||.| |.+.+.+
T Consensus 32 ~a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~a 82 (132)
T KOG3424|consen 32 KANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYA 82 (132)
T ss_pred CCCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHH
Confidence 3567888888877753222 22222345777788876 3334333
No 158
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=52.61 E-value=5.5 Score=18.03 Aligned_cols=37 Identities=8% Similarity=0.127 Sum_probs=24.0
Q ss_pred HHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhh
Q 045845 7 RDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTL 51 (69)
Q Consensus 7 ~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l 51 (69)
+++++.|..+... +++.- .+|..|.+..+|...+..+
T Consensus 27 ~~v~~~~~~~~~f~k~vkL--------~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL--------KAFSPFKSAEEALENANAI 64 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh--------hhccCCCCHHHHHHHHHHh
Confidence 4666666665544 33332 4789999888887776654
No 159
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=51.78 E-value=8.3 Score=25.21 Aligned_cols=52 Identities=17% Similarity=0.063 Sum_probs=37.9
Q ss_pred CHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEE
Q 045845 5 ASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHV 63 (69)
Q Consensus 5 ~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v 63 (69)
+.+-++.++...|.+ .....+ |||+.|..+.-..+|+..++...++|..+.+
T Consensus 53 s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 53 SQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred hHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 445566677777777 443332 8999999998888999988888887765543
No 160
>PF11956 KCNQC3-Ank-G_bd: Ankyrin-G binding motif of KCNQ2-3; InterPro: IPR020969 Interactions with ankyrin-G are crucial to the localisation of voltage-gated sodium channels (VGSCs) at the axon initial segment and for neurons to initiate action potentials. This conserved 9-amino acid motif ((V/A)P(I/L)AXXE(S/D)D) is required for ankyrin-G binding and functions to localise sodium channels to a variety of 'excitable' membrane domains both inside and outside of the nervous system []. This motif has also been identified in the potassium channel 6TM proteins KCNQ2 and KCNQ3 [] that correspond to the M channels that exert a crucial influence over neuronal excitability. KCNQ2/KCNQ3 channels are preferentially localised to the surface of axons both at the axonal initial segment and more distally, and this axonal initial segment targeting of surface KCNQ channels is mediated by these ankyrin-G binding motifs of KCNQ2 and KCNQ3 []. KCNQ3 is a major determinant of M channel localisation to the AIS, rather than KCNQ2 []. Phylogenetic analysis reveals that anchor motifs evolved sequentially in chordates (NaV channel) and jawed vertebrates (KCNQ2/3) [].; GO: 0005267 potassium channel activity, 0016020 membrane
Probab=51.12 E-value=8.1 Score=18.97 Aligned_cols=19 Identities=5% Similarity=-0.123 Sum_probs=15.5
Q ss_pred CccCCHHHHHHHhhccCce
Q 045845 1 MIGKASRDRESKTYQLLRL 19 (69)
Q Consensus 1 ~~~~~~~~l~~~f~~~g~i 19 (69)
|.+|+.++|++-|+.|..-
T Consensus 24 i~SVdHEELERSfSGFSIS 42 (102)
T PF11956_consen 24 IPSVDHEELERSFSGFSIS 42 (102)
T ss_pred ccccCHHHHhcCcCCccee
Confidence 5788999999999888543
No 161
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=49.84 E-value=10 Score=24.18 Aligned_cols=37 Identities=22% Similarity=0.427 Sum_probs=30.3
Q ss_pred ceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 30 SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 30 ~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
...++++.+.+...+..|++.++|..+.+..+++..+
T Consensus 62 ~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~ 98 (534)
T KOG2187|consen 62 MPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLG 98 (534)
T ss_pred CCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhc
Confidence 3468999999999999999999999888766655543
No 162
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=44.60 E-value=17 Score=15.83 Aligned_cols=17 Identities=6% Similarity=0.036 Sum_probs=12.2
Q ss_pred ccCCHHHHHHHhhccCc
Q 045845 2 IGKASRDRESKTYQLLR 18 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~ 18 (69)
|++|+++|++.....|.
T Consensus 30 ~gvt~~~L~~AV~~vG~ 46 (57)
T PF12244_consen 30 FGVTEEQLREAVRAVGN 46 (57)
T ss_pred HCcCHHHHHHHHHHHCc
Confidence 56777777777776665
No 163
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=44.18 E-value=63 Score=18.64 Aligned_cols=16 Identities=0% Similarity=-0.350 Sum_probs=13.3
Q ss_pred CCHHHHHHHhhccCce
Q 045845 4 KASRDRESKTYQLLRL 19 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i 19 (69)
+++..|.+.|.++|-+
T Consensus 162 mte~ql~~vf~KhGLe 177 (236)
T KOG3003|consen 162 MTEAQLKEVFAKHGLE 177 (236)
T ss_pred HHHHHHHHHHHHcCce
Confidence 4678899999999966
No 164
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.92 E-value=4.2 Score=25.43 Aligned_cols=63 Identities=6% Similarity=-0.129 Sum_probs=39.1
Q ss_pred cCCHHHHHHHhhccCce-EEeeeC--CCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 3 GKASRDRESKTYQLLRL-SLLSKS--LNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-~~~~~~--~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
+.+++++.-+|.-||.| ..-..+ ..+...-.+|++... +++..++..+.-..+.+..+++..+
T Consensus 14 ~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 14 SNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred ccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcC
Confidence 35678899999999998 322222 224445667777654 4566677666555556655555544
No 165
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=42.78 E-value=22 Score=15.34 Aligned_cols=11 Identities=45% Similarity=0.918 Sum_probs=8.1
Q ss_pred ceeEEEEEEcC
Q 045845 30 SHGFGFLSLDR 40 (69)
Q Consensus 30 ~~g~~fv~~~~ 40 (69)
++||||+...+
T Consensus 7 ~~GfGFv~~~~ 17 (58)
T PF08206_consen 7 PKGFGFVIPDD 17 (58)
T ss_dssp SSS-EEEEECT
T ss_pred cCCCEEEEECC
Confidence 46899999875
No 166
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=42.73 E-value=46 Score=17.49 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=20.1
Q ss_pred ceeEEEEEEcCHHHHHHHHHhhCCc
Q 045845 30 SHGFGFLSLDRDEDADAAIRTLDET 54 (69)
Q Consensus 30 ~~g~~fv~~~~~~~a~~ai~~l~~~ 54 (69)
-.||.||.....+++..++..+.+.
T Consensus 45 fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 45 LKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred CCcEEEEEEEChHHHHHHHhcCCCE
Confidence 5799999998778888888777654
No 167
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=42.28 E-value=26 Score=13.71 Aligned_cols=16 Identities=13% Similarity=-0.286 Sum_probs=12.8
Q ss_pred CCHHHHHHHhhccCce
Q 045845 4 KASRDRESKTYQLLRL 19 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i 19 (69)
-++++|+..+..+|..
T Consensus 4 Ws~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 4 WSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCHHHHHHHHHHcCCC
Confidence 4678999999888764
No 168
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=41.40 E-value=64 Score=17.96 Aligned_cols=55 Identities=7% Similarity=0.015 Sum_probs=34.1
Q ss_pred ccCCHHHH---HHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCcee
Q 045845 2 IGKASRDR---ESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEW 56 (69)
Q Consensus 2 ~~~~~~~l---~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~ 56 (69)
|.+++++| .+...+||.. .++.|+.++.+.-..|+.-.+.+-+..|+..+....+
T Consensus 37 i~i~~~~lk~F~k~AkKyGV~yav~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~ 95 (204)
T PF12687_consen 37 IEITDEDLKEFKKEAKKYGVDYAVKKDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKL 95 (204)
T ss_pred EecCHhhHHHHHHHHHHcCCceEEeeccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhh
Confidence 45556554 4456678888 7778776665443444444567777778776665433
No 169
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=40.69 E-value=97 Score=19.84 Aligned_cols=52 Identities=12% Similarity=0.231 Sum_probs=35.9
Q ss_pred CHHHHHHHhhccCc-e---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCC
Q 045845 5 ASRDRESKTYQLLR-L---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNG 58 (69)
Q Consensus 5 ~~~~l~~~f~~~g~-i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~ 58 (69)
+.-|+-.+...+-+ | +++++. --.+=..++.|.+..+|..--..+||..+..
T Consensus 87 t~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 87 TSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred cHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 44566666665432 3 555542 2234568999999999999999999987754
No 170
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=40.21 E-value=22 Score=21.14 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=30.0
Q ss_pred CHHHHHHHhhccCce----EEeeeCC----CCCceeEEEEEE--------------cCHHHHHHHHHhhCCcee
Q 045845 5 ASRDRESKTYQLLRL----SLLSKSL----NRDSHGFGFLSL--------------DRDEDADAAIRTLDETEW 56 (69)
Q Consensus 5 ~~~~l~~~f~~~g~i----~~~~~~~----~~~~~g~~fv~~--------------~~~~~a~~ai~~l~~~~~ 56 (69)
+++-|...|..||.| .-+.||. +|+..|..|-.| ..+-....|+..|.|..+
T Consensus 174 se~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 174 SEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred hHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 567799999999988 2233332 455444433333 233334466777777643
No 171
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=39.09 E-value=51 Score=16.94 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=19.6
Q ss_pred CceeEEEEEEcCHHHHHHHHHhhCCc
Q 045845 29 DSHGFGFLSLDRDEDADAAIRTLDET 54 (69)
Q Consensus 29 ~~~g~~fv~~~~~~~a~~ai~~l~~~ 54 (69)
.-+||-|+......+...++....|.
T Consensus 36 ~fpGYvFV~~~~~~~~~~~i~~~~gv 61 (145)
T TIGR00405 36 SLKGYILVEAETKIDMRNPIIGVPHV 61 (145)
T ss_pred CCCcEEEEEEECcHHHHHHHhCCCCE
Confidence 36799999998766677777766654
No 172
>PRK15464 cold shock-like protein CspH; Provisional
Probab=38.42 E-value=19 Score=16.47 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=8.5
Q ss_pred ceeEEEEEEcC
Q 045845 30 SHGFGFLSLDR 40 (69)
Q Consensus 30 ~~g~~fv~~~~ 40 (69)
.+||+||.-.+
T Consensus 15 ~KGfGFI~~~~ 25 (70)
T PRK15464 15 KSGKGFIIPSD 25 (70)
T ss_pred CCCeEEEccCC
Confidence 46999998754
No 173
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=38.39 E-value=22 Score=16.41 Aligned_cols=11 Identities=36% Similarity=0.945 Sum_probs=8.1
Q ss_pred ceeEEEEEEcC
Q 045845 30 SHGFGFLSLDR 40 (69)
Q Consensus 30 ~~g~~fv~~~~ 40 (69)
.+||+||.-.+
T Consensus 12 ~KGfGFI~~~~ 22 (74)
T PRK09937 12 AKGFGFICPEG 22 (74)
T ss_pred CCCeEEEeeCC
Confidence 47999997653
No 174
>PRK14998 cold shock-like protein CspD; Provisional
Probab=37.58 E-value=22 Score=16.34 Aligned_cols=11 Identities=36% Similarity=0.945 Sum_probs=8.4
Q ss_pred ceeEEEEEEcC
Q 045845 30 SHGFGFLSLDR 40 (69)
Q Consensus 30 ~~g~~fv~~~~ 40 (69)
.+||+||.-.+
T Consensus 12 ~kGfGFI~~~~ 22 (73)
T PRK14998 12 AKGFGFICPEG 22 (73)
T ss_pred CCceEEEecCC
Confidence 47999998654
No 175
>PRK15463 cold shock-like protein CspF; Provisional
Probab=37.36 E-value=21 Score=16.24 Aligned_cols=11 Identities=18% Similarity=0.425 Sum_probs=8.6
Q ss_pred ceeEEEEEEcC
Q 045845 30 SHGFGFLSLDR 40 (69)
Q Consensus 30 ~~g~~fv~~~~ 40 (69)
.+||+||.-.+
T Consensus 15 ~kGfGFI~~~~ 25 (70)
T PRK15463 15 KSGKGLITPSD 25 (70)
T ss_pred CCceEEEecCC
Confidence 47999998754
No 176
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=37.29 E-value=21 Score=16.15 Aligned_cols=11 Identities=45% Similarity=1.041 Sum_probs=8.4
Q ss_pred ceeEEEEEEcC
Q 045845 30 SHGFGFLSLDR 40 (69)
Q Consensus 30 ~~g~~fv~~~~ 40 (69)
.+||+||.-.+
T Consensus 14 ~kGyGFI~~~~ 24 (69)
T PRK09507 14 SKGFGFITPED 24 (69)
T ss_pred CCCcEEEecCC
Confidence 46899998754
No 177
>PRK10943 cold shock-like protein CspC; Provisional
Probab=37.15 E-value=20 Score=16.21 Aligned_cols=11 Identities=45% Similarity=0.951 Sum_probs=8.4
Q ss_pred ceeEEEEEEcC
Q 045845 30 SHGFGFLSLDR 40 (69)
Q Consensus 30 ~~g~~fv~~~~ 40 (69)
.+||+||.-.+
T Consensus 14 ~kGfGFI~~~~ 24 (69)
T PRK10943 14 SKGFGFITPAD 24 (69)
T ss_pred CCCcEEEecCC
Confidence 46899998754
No 178
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=37.13 E-value=34 Score=18.54 Aligned_cols=17 Identities=6% Similarity=-0.107 Sum_probs=14.8
Q ss_pred cCCHHHHHHHhhccCce
Q 045845 3 GKASRDRESKTYQLLRL 19 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i 19 (69)
+.+.+.+.+++.+||+|
T Consensus 95 ~~t~e~~~~LL~~yGPL 111 (166)
T PF12385_consen 95 SYTAEGLANLLREYGPL 111 (166)
T ss_pred ccCHHHHHHHHHHcCCe
Confidence 45678899999999999
No 179
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=36.90 E-value=14 Score=16.73 Aligned_cols=18 Identities=6% Similarity=-0.090 Sum_probs=12.0
Q ss_pred ccCCHHHHHHHhhccCce
Q 045845 2 IGKASRDRESKTYQLLRL 19 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i 19 (69)
...++++.......+|.|
T Consensus 41 C~ms~edF~~~~p~~Gdi 58 (68)
T cd08757 41 CSMTEEEFREAAGSYGSL 58 (68)
T ss_pred HcCCHHHHHHHcCCcHHH
Confidence 456677777777666665
No 180
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=36.45 E-value=35 Score=14.18 Aligned_cols=17 Identities=6% Similarity=-0.164 Sum_probs=13.2
Q ss_pred cCCHHHHHHHhhccCce
Q 045845 3 GKASRDRESKTYQLLRL 19 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i 19 (69)
..++++|++.+.+||..
T Consensus 5 ~LSd~eL~~~L~~~G~~ 21 (44)
T smart00540 5 RLSDAELRAELKQYGLP 21 (44)
T ss_pred HcCHHHHHHHHHHcCCC
Confidence 45788899998888754
No 181
>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators. It is thought to function as a metal-sensing regulatory module [].
Probab=35.87 E-value=37 Score=13.60 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=12.0
Q ss_pred hCCceeCCeEEEEEeec
Q 045845 51 LDETEWNGRIIHVEKSK 67 (69)
Q Consensus 51 l~~~~~~~~~i~v~~a~ 67 (69)
+-|.++.|.++.+.+.+
T Consensus 3 ~CG~~I~~eP~~~k~~~ 19 (37)
T PF08394_consen 3 YCGGEITGEPIVVKIGN 19 (37)
T ss_pred ccCCcccCCEEEEEECC
Confidence 45677888888777654
No 182
>KOG1753 consensus 40S ribosomal protein S16 [Translation, ribosomal structure and biogenesis]
Probab=35.55 E-value=42 Score=17.58 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=20.9
Q ss_pred CCHHHHHHHhhccCceEEeeeCCCCCceeEE
Q 045845 4 KASRDRESKTYQLLRLSLLSKSLNRDSHGFG 34 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~ 34 (69)
.+..+|++.|-+|+.--++-|+....++-|+
T Consensus 102 ~skkeiKd~li~yDrtlLVADprr~esKKFG 132 (145)
T KOG1753|consen 102 QSKKEIKDILIQYDRTLLVADPRRCESKKFG 132 (145)
T ss_pred HHHHHHHHHHHhCCceEEEcCcccccccccC
Confidence 3567899999999877555666555555443
No 183
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]. The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=34.49 E-value=48 Score=14.50 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=12.2
Q ss_pred EEEcCHHHHHHHHHhh
Q 045845 36 LSLDRDEDADAAIRTL 51 (69)
Q Consensus 36 v~~~~~~~a~~ai~~l 51 (69)
..|++.++...|+..+
T Consensus 8 ~~F~~~~e~k~av~~y 23 (67)
T PF03108_consen 8 QTFPSKEEFKEAVREY 23 (67)
T ss_pred CEECCHHHHHHHHHHH
Confidence 4678888888888755
No 184
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=34.21 E-value=28 Score=15.60 Aligned_cols=11 Identities=36% Similarity=0.945 Sum_probs=8.6
Q ss_pred ceeEEEEEEcC
Q 045845 30 SHGFGFLSLDR 40 (69)
Q Consensus 30 ~~g~~fv~~~~ 40 (69)
.+||+||.-.+
T Consensus 12 ~kGfGFI~~~~ 22 (68)
T TIGR02381 12 AKGFGFICPEG 22 (68)
T ss_pred CCCeEEEecCC
Confidence 46999998764
No 185
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=34.05 E-value=30 Score=20.42 Aligned_cols=17 Identities=0% Similarity=-0.246 Sum_probs=14.5
Q ss_pred cCCHHHHHHHhhccCce
Q 045845 3 GKASRDRESKTYQLLRL 19 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i 19 (69)
+.++++|.++|..||..
T Consensus 138 ~~~~~~L~~i~~~yGee 154 (296)
T PRK00050 138 TYSEEELARIFKEYGEE 154 (296)
T ss_pred hCCHHHHHHHHHHhcCc
Confidence 45788999999999976
No 186
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=33.62 E-value=18 Score=17.03 Aligned_cols=18 Identities=0% Similarity=-0.276 Sum_probs=14.0
Q ss_pred ccCCHHHHHHHhhccCce
Q 045845 2 IGKASRDRESKTYQLLRL 19 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i 19 (69)
..++.++..+.+..+|.+
T Consensus 46 C~ms~eeF~~~~p~~Gdv 63 (78)
T cd08538 46 CSMTQEEFIEAAGICGEY 63 (78)
T ss_pred HcCCHHHHHHHcccchHH
Confidence 456788888888888877
No 187
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.42 E-value=1.1e+02 Score=18.16 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=26.1
Q ss_pred CHHHHHHHh----hccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHH
Q 045845 5 ASRDRESKT----YQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAI 48 (69)
Q Consensus 5 ~~~~l~~~f----~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai 48 (69)
+++++.++| ..||.+ .++.+ -|... ..+....+.++....+
T Consensus 74 ~~~~~~~~~~~~~~~fg~vDvLVNN--AG~~~-~~~~~~~~~~~~~~~m 119 (282)
T KOG1205|consen 74 DEESVKKFVEWAIRHFGRVDVLVNN--AGISL-VGFLEDTDIEDVRNVM 119 (282)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEec--Ccccc-ccccccCcHHHHHHHh
Confidence 345667666 688999 66554 35656 5666666666666443
No 188
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=33.17 E-value=32 Score=20.47 Aligned_cols=17 Identities=12% Similarity=-0.123 Sum_probs=14.2
Q ss_pred cCCHHHHHHHhhccCce
Q 045845 3 GKASRDRESKTYQLLRL 19 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i 19 (69)
+.++++|.++|..||..
T Consensus 140 ~~~e~~L~~i~~~yGEe 156 (305)
T TIGR00006 140 TYSEEDLERILKKYGEE 156 (305)
T ss_pred hCCHHHHHHHHHHhcCc
Confidence 45788999999999976
No 189
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=32.85 E-value=25 Score=15.86 Aligned_cols=11 Identities=45% Similarity=1.050 Sum_probs=8.3
Q ss_pred ceeEEEEEEcC
Q 045845 30 SHGFGFLSLDR 40 (69)
Q Consensus 30 ~~g~~fv~~~~ 40 (69)
.+||+||.-.+
T Consensus 15 ~kGfGFI~~~~ 25 (70)
T PRK10354 15 DKGFGFITPDD 25 (70)
T ss_pred CCCcEEEecCC
Confidence 36899998654
No 190
>PRK09890 cold shock protein CspG; Provisional
Probab=32.52 E-value=26 Score=15.87 Aligned_cols=11 Identities=45% Similarity=1.050 Sum_probs=8.5
Q ss_pred ceeEEEEEEcC
Q 045845 30 SHGFGFLSLDR 40 (69)
Q Consensus 30 ~~g~~fv~~~~ 40 (69)
.+||+||.-.+
T Consensus 15 ~kGfGFI~~~~ 25 (70)
T PRK09890 15 DKGFGFITPDD 25 (70)
T ss_pred CCCcEEEecCC
Confidence 36899998764
No 191
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=31.48 E-value=28 Score=18.08 Aligned_cols=18 Identities=0% Similarity=-0.044 Sum_probs=13.2
Q ss_pred CccCCHHHHHHHhhccCc
Q 045845 1 MIGKASRDRESKTYQLLR 18 (69)
Q Consensus 1 ~~~~~~~~l~~~f~~~g~ 18 (69)
|+.+++++++.++..+|.
T Consensus 96 Llemsd~el~~~l~~~g~ 113 (129)
T PF13543_consen 96 LLEMSDEELKEILNRCGA 113 (129)
T ss_pred HHhCCHHHHHHHHHHhCC
Confidence 356788888888887764
No 192
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=31.35 E-value=43 Score=14.55 Aligned_cols=12 Identities=33% Similarity=0.911 Sum_probs=8.8
Q ss_pred ceeEEEEEEcCH
Q 045845 30 SHGFGFLSLDRD 41 (69)
Q Consensus 30 ~~g~~fv~~~~~ 41 (69)
.+||+||.-.+.
T Consensus 11 ~kgyGFI~~~~~ 22 (66)
T PF00313_consen 11 EKGYGFITSDDG 22 (66)
T ss_dssp TTTEEEEEETTS
T ss_pred CCCceEEEEccc
Confidence 358999998653
No 193
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=30.91 E-value=72 Score=15.39 Aligned_cols=30 Identities=7% Similarity=0.251 Sum_probs=18.8
Q ss_pred EEEEEcCHHHHHHHHHhhCCc--eeCCeEEEEE
Q 045845 34 GFLSLDRDEDADAAIRTLDET--EWNGRIIHVE 64 (69)
Q Consensus 34 ~fv~~~~~~~a~~ai~~l~~~--~~~~~~i~v~ 64 (69)
|.++|.+..-|++.+. ...+ .+++..+.|.
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~ 32 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVK 32 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEE
Confidence 5788988887877766 3333 3455555444
No 194
>PF13021 DUF3885: Domain of unknown function (DUF3885)
Probab=29.94 E-value=37 Score=13.65 Aligned_cols=17 Identities=6% Similarity=-0.093 Sum_probs=11.8
Q ss_pred ccCCHHHHHHHhhccCc
Q 045845 2 IGKASRDRESKTYQLLR 18 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~ 18 (69)
++.+.+.|+.++.+|..
T Consensus 12 ia~~~~~i~~ly~~y~~ 28 (38)
T PF13021_consen 12 IANNKERIRPLYEKYND 28 (38)
T ss_pred eeCCHHHHHHHHHHHHH
Confidence 45677778887777653
No 195
>COG4001 Predicted metal-binding protein [General function prediction only]
Probab=29.89 E-value=53 Score=16.03 Aligned_cols=13 Identities=15% Similarity=0.202 Sum_probs=10.4
Q ss_pred ccCCHHHHHHHhh
Q 045845 2 IGKASRDRESKTY 14 (69)
Q Consensus 2 ~~~~~~~l~~~f~ 14 (69)
|+++++++++.|.
T Consensus 72 fgVdee~iRE~~~ 84 (102)
T COG4001 72 FGVDEEDIREQMH 84 (102)
T ss_pred cCCCHHHHHHHHH
Confidence 6788888888775
No 196
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=29.63 E-value=1.5e+02 Score=18.83 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=33.4
Q ss_pred ccCCHHHHHHHhhccCce--EEeeeCCCCCceeEEEEEEc-CHHHHHHHHHhhC
Q 045845 2 IGKASRDRESKTYQLLRL--SLLSKSLNRDSHGFGFLSLD-RDEDADAAIRTLD 52 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~g~~fv~~~-~~~~a~~ai~~l~ 52 (69)
++++.++|.+-++.+-++ ++-.-... .--.+|.|. +++..++++..+.
T Consensus 304 lG~~~e~i~~~l~~~~~v~GRmE~v~~~---~~~v~VDyAHnPd~le~~L~~~~ 354 (475)
T COG0769 304 LGVDLEDILAGLETLKPVPGRMELVNIG---GKLVIVDYAHNPDGLEKALRAVR 354 (475)
T ss_pred cCCCHHHHHHHHHhcCCCCCcceEecCC---CCeEEEEeccChHHHHHHHHHHH
Confidence 467889999999888766 33222221 235889997 6777788888776
No 197
>PF09820 AAA-ATPase_like: Predicted AAA-ATPase; InterPro: IPR018631 This entry is predicted to be an AAA-ATPase domain []. It is usually found together with IPR012547 from INTERPRO.
Probab=29.44 E-value=35 Score=19.76 Aligned_cols=16 Identities=13% Similarity=0.083 Sum_probs=14.3
Q ss_pred CccCCHHHHHHHhhcc
Q 045845 1 MIGKASRDRESKTYQL 16 (69)
Q Consensus 1 ~~~~~~~~l~~~f~~~ 16 (69)
|++.|+++++.+|..+
T Consensus 222 ~~GFT~~Ev~~ll~~~ 237 (284)
T PF09820_consen 222 YFGFTEEEVETLLKYY 237 (284)
T ss_pred hcCcCHHHHHHHHHHH
Confidence 5788999999999987
No 198
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=28.98 E-value=81 Score=15.37 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=16.5
Q ss_pred eeEEEEEEcCHHHHHHHHHhh
Q 045845 31 HGFGFLSLDRDEDADAAIRTL 51 (69)
Q Consensus 31 ~g~~fv~~~~~~~a~~ai~~l 51 (69)
+.+|.|.|++.+.+..|-..|
T Consensus 51 ~pm~vv~f~~~~~g~~~yq~L 71 (91)
T PF12829_consen 51 RPMCVVNFPNYEVGVSAYQKL 71 (91)
T ss_pred eEeEEEECCChHHHHHHHHHH
Confidence 468999999988887776544
No 199
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=28.95 E-value=39 Score=14.65 Aligned_cols=10 Identities=50% Similarity=1.139 Sum_probs=8.3
Q ss_pred eeEEEEEEcC
Q 045845 31 HGFGFLSLDR 40 (69)
Q Consensus 31 ~g~~fv~~~~ 40 (69)
+||+||.-.+
T Consensus 12 kGfGFI~~~~ 21 (65)
T cd04458 12 KGFGFITPDD 21 (65)
T ss_pred CCeEEEecCC
Confidence 6899998765
No 200
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=28.45 E-value=1.6e+02 Score=19.50 Aligned_cols=39 Identities=13% Similarity=0.052 Sum_probs=29.2
Q ss_pred CHHHHHHHhhccCce--EEeeeCCCCCceeEEEEEEcCHHH
Q 045845 5 ASRDRESKTYQLLRL--SLLSKSLNRDSHGFGFLSLDRDED 43 (69)
Q Consensus 5 ~~~~l~~~f~~~g~i--~~~~~~~~~~~~g~~fv~~~~~~~ 43 (69)
|.-+|+++++.-|+- +++.......++..+|+.-....+
T Consensus 331 T~lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD 371 (622)
T COG1148 331 TNLELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRD 371 (622)
T ss_pred hHHHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcC
Confidence 456789999988888 666665556678999999865444
No 201
>PF05023 Phytochelatin: Phytochelatin synthase; InterPro: IPR007719 This entry represents plant phytochelatin synthases (also known as glutathione gamma-glutamylcysteinyltransferase; 2.3.2.15 from EC), which is involved in the synthesis of phytochelatins (PC) and homophytochelatins (hPC), the heavy-metal-binding peptides of plants. This enzyme is required for detoxification of heavy metals such as cadmium and arsenate. The N-terminal region of phytochelatin synthase contains the active site, as well as four highly conserved cysteine residues that appear to play an important role in heavy-metal-induced phytochelatin catalysis. The C-terminal region is rich in cysteines, and may act as a metal sensor, whereby the Cys residues bind cadmium ions to bring them into closer proximity and transferring them to the activation site in the N-terminal catalytic domain []. The C-terminal region displays homology to the functional domains of metallothionein and metallochaperone.; GO: 0016756 glutathione gamma-glutamylcysteinyltransferase activity, 0046872 metal ion binding, 0010038 response to metal ion, 0046938 phytochelatin biosynthetic process; PDB: 2BTW_A 2BU3_B.
Probab=27.93 E-value=62 Score=18.21 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=10.0
Q ss_pred eeCCCCCceeEEEEE
Q 045845 23 SKSLNRDSHGFGFLS 37 (69)
Q Consensus 23 ~~~~~~~~~g~~fv~ 37 (69)
.|+.++++|||-.|.
T Consensus 198 ~D~~s~~~RG~~~is 212 (212)
T PF05023_consen 198 IDPDSGKSRGYLLIS 212 (212)
T ss_dssp EETTTTEE-EEEEEE
T ss_pred cCCCCCCcceEEEeC
Confidence 467788888887653
No 202
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=27.91 E-value=1.6e+02 Score=18.35 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=35.7
Q ss_pred ccCCHHHHHHHhhccCce--EEeeeCCCCCceeEEEEE--Ec-CHHHHHHHHHhhCCceeCCeEEE
Q 045845 2 IGKASRDRESKTYQLLRL--SLLSKSLNRDSHGFGFLS--LD-RDEDADAAIRTLDETEWNGRIIH 62 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~g~~fv~--~~-~~~~a~~ai~~l~~~~~~~~~i~ 62 (69)
++++.+++.+-+..|.++ ++-.-.. ..|..++. |. +++....++..+... .+++|-
T Consensus 297 lGi~~~~i~~~L~~~~~~~gR~e~v~~---~~g~~iIDDsYn~nP~s~~aaL~~l~~~--~~r~i~ 357 (453)
T PRK10773 297 VGATLDAVKAGLANLKAVPGRLFPIQL---AEGQLLLDDSYNANVGSMTAAAQVLAEM--PGYRVM 357 (453)
T ss_pred cCCCHHHHHHHHHhCCCCCCceeEEEC---CCCeEEEEcCCCCCHHHHHHHHHHHHhC--CCCEEE
Confidence 367788899888888766 3222111 12456676 65 578889999988764 345543
No 203
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=27.64 E-value=51 Score=14.86 Aligned_cols=13 Identities=8% Similarity=-0.079 Sum_probs=9.1
Q ss_pred HHHHHHhhccCce
Q 045845 7 RDRESKTYQLLRL 19 (69)
Q Consensus 7 ~~l~~~f~~~g~i 19 (69)
-|++.++.+||.+
T Consensus 5 yDVqQLLK~fG~~ 17 (62)
T PF06014_consen 5 YDVQQLLKKFGII 17 (62)
T ss_dssp HHHHHHHHTTS--
T ss_pred HHHHHHHHHCCEE
Confidence 5788888888876
No 204
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=26.91 E-value=24 Score=15.78 Aligned_cols=18 Identities=6% Similarity=-0.254 Sum_probs=11.0
Q ss_pred ccCCHHHHHHHhhccCce
Q 045845 2 IGKASRDRESKTYQLLRL 19 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i 19 (69)
...+.++....+..+|.+
T Consensus 39 c~ls~edF~~~~p~~Gdi 56 (66)
T cd08203 39 CLLTKEDFLRRAPSGGDI 56 (66)
T ss_pred HhCCHHHHHHHcCCcHHH
Confidence 445666666666666554
No 205
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=26.54 E-value=68 Score=15.00 Aligned_cols=14 Identities=7% Similarity=-0.043 Sum_probs=10.8
Q ss_pred cCCHHHHHHHhhcc
Q 045845 3 GKASRDRESKTYQL 16 (69)
Q Consensus 3 ~~~~~~l~~~f~~~ 16 (69)
+++++.+.++|..+
T Consensus 12 nvsd~qi~elFq~l 25 (82)
T PF11212_consen 12 NVSDEQINELFQAL 25 (82)
T ss_pred CCCHHHHHHHHHHH
Confidence 57888888888764
No 206
>PF11181 YflT: Heat induced stress protein YflT
Probab=26.35 E-value=90 Score=15.08 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=17.0
Q ss_pred EEEcCHHHHHHHHHhhCCceeCCeEE
Q 045845 36 LSLDRDEDADAAIRTLDETEWNGRII 61 (69)
Q Consensus 36 v~~~~~~~a~~ai~~l~~~~~~~~~i 61 (69)
-.|.+.+++..++..|...-+....|
T Consensus 4 gv~~~~~E~~~~I~~L~~~Gy~~ddI 29 (103)
T PF11181_consen 4 GVYDNEEEALSAIEELKAQGYSEDDI 29 (103)
T ss_pred EEECCHHHHHHHHHHHHHcCCCcccE
Confidence 35677888888888776544444444
No 207
>COG4861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.15 E-value=60 Score=19.35 Aligned_cols=17 Identities=24% Similarity=0.040 Sum_probs=14.6
Q ss_pred CccCCHHHHHHHhhccC
Q 045845 1 MIGKASRDRESKTYQLL 17 (69)
Q Consensus 1 ~~~~~~~~l~~~f~~~g 17 (69)
|+.++++++.+.|++++
T Consensus 1 M~~i~e~d~~ea~~Q~~ 17 (345)
T COG4861 1 MDQIGEADLAEAVEQHL 17 (345)
T ss_pred CccccHHHHHHHHHhhc
Confidence 78889999988888876
No 208
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=24.28 E-value=73 Score=15.07 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=16.7
Q ss_pred eEEEEEEcCHHHHHHHHHhhCCc
Q 045845 32 GFGFLSLDRDEDADAAIRTLDET 54 (69)
Q Consensus 32 g~~fv~~~~~~~a~~ai~~l~~~ 54 (69)
||-|+.....++...++..+.|.
T Consensus 60 GYvFv~~~~~~~~~~~i~~~~~v 82 (106)
T smart00738 60 GYIFVEADLEDEVWTAIRGTPGV 82 (106)
T ss_pred CEEEEEEEeCCcHHHHHhcCCCc
Confidence 99999987555556677666664
No 209
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=23.73 E-value=62 Score=12.27 Aligned_cols=12 Identities=8% Similarity=-0.006 Sum_probs=7.2
Q ss_pred cCCHHHHHHHhh
Q 045845 3 GKASRDRESKTY 14 (69)
Q Consensus 3 ~~~~~~l~~~f~ 14 (69)
+++.++++.++.
T Consensus 16 Gls~eeir~FL~ 27 (30)
T PF08671_consen 16 GLSKEEIREFLE 27 (30)
T ss_dssp T--HHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 567788887764
No 210
>PF07979 Intimin_C: Intimin C-type lectin domain; InterPro: IPR013117 This domain is found at the C terminus of intimin. Its structure has been solved and shown to have a C-lectin type of structure []. Intimin is a bacterial adhesion molecule involved in intimate attachment of enteropathogenic and enterohemorrhagic Escherichia coli to mammalian host cells. Intimin targets the translocated intimin receptor (Tir), which is exported by the bacteria and integrated into the host cell plasma membrane.; GO: 0005488 binding, 0009405 pathogenesis, 0009986 cell surface; PDB: 1CWV_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 3NCX_B 3NCW_D.
Probab=23.65 E-value=74 Score=15.86 Aligned_cols=17 Identities=0% Similarity=-0.162 Sum_probs=14.2
Q ss_pred cCCHHHHHHHhhccCce
Q 045845 3 GKASRDRESKTYQLLRL 19 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i 19 (69)
-.+.+.|..+|+.+|..
T Consensus 30 psS~~~L~~vy~~WGaa 46 (101)
T PF07979_consen 30 PSSQSELKDVYNEWGAA 46 (101)
T ss_dssp BSSHHHHHHHHHHHSSG
T ss_pred cccHHHHHHHHHhhccc
Confidence 34678899999999987
No 211
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=22.67 E-value=52 Score=11.83 Aligned_cols=10 Identities=0% Similarity=-0.194 Sum_probs=5.2
Q ss_pred CHHHHHHHhh
Q 045845 5 ASRDRESKTY 14 (69)
Q Consensus 5 ~~~~l~~~f~ 14 (69)
+.+++..++.
T Consensus 18 ~~~el~~~l~ 27 (31)
T PF13405_consen 18 DFEELRAILR 27 (31)
T ss_dssp EHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 4455555554
No 212
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=21.82 E-value=1.1e+02 Score=14.46 Aligned_cols=12 Identities=8% Similarity=0.097 Sum_probs=6.6
Q ss_pred CCHHHHHHHhhc
Q 045845 4 KASRDRESKTYQ 15 (69)
Q Consensus 4 ~~~~~l~~~f~~ 15 (69)
.+..+|+..+..
T Consensus 13 psr~ei~~klA~ 24 (84)
T PF01282_consen 13 PSRKEIREKLAA 24 (84)
T ss_dssp --HHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 455677776664
No 213
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=21.82 E-value=1e+02 Score=14.22 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=18.2
Q ss_pred eeEEEEEEcCHHHHHHHHHhhCCc-eeCCeEEEEE
Q 045845 31 HGFGFLSLDRDEDADAAIRTLDET-EWNGRIIHVE 64 (69)
Q Consensus 31 ~g~~fv~~~~~~~a~~ai~~l~~~-~~~~~~i~v~ 64 (69)
.|.+.|...+.+.|+.....+... ...|.+|++.
T Consensus 47 ~G~avv~~~~~e~ae~~~~~l~~~g~~~~~PL~~t 81 (82)
T PF02617_consen 47 EGRAVVGTGSREEAEEYAEKLQRAGRDSGHPLRAT 81 (82)
T ss_dssp HSEEEEEEEEHHHHHHHHHHHHHHHHHTT---EEE
T ss_pred cCCEeeeeCCHHHHHHHHHHHHHHhhccCCCeEEe
Confidence 366777777777777665544322 3445566554
No 214
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=21.62 E-value=92 Score=15.25 Aligned_cols=14 Identities=7% Similarity=0.045 Sum_probs=10.8
Q ss_pred ccCCHHHHHHHhhc
Q 045845 2 IGKASRDRESKTYQ 15 (69)
Q Consensus 2 ~~~~~~~l~~~f~~ 15 (69)
+.+++++|...|..
T Consensus 41 ieI~d~eL~~~Fee 54 (92)
T PF07820_consen 41 IEISDAELQAAFEE 54 (92)
T ss_pred ccCCHHHHHHHHHH
Confidence 46788888888865
No 215
>PHA02763 hypothetical protein; Provisional
Probab=21.37 E-value=94 Score=15.10 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=18.9
Q ss_pred EEEEEcCHHHHHHHHHhhCCceeCCe
Q 045845 34 GFLSLDRDEDADAAIRTLDETEWNGR 59 (69)
Q Consensus 34 ~fv~~~~~~~a~~ai~~l~~~~~~~~ 59 (69)
.|-.|.+.++...+.+.|++..++..
T Consensus 63 ~~SGFe~VEeWl~eArrLh~~~id~~ 88 (102)
T PHA02763 63 KFSGFENVEEWLNEARRLHNDKIDPE 88 (102)
T ss_pred hhcchhhHHHHHHHHHHHhcCCCChh
Confidence 34456677777788888998887764
No 216
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=21.21 E-value=94 Score=14.11 Aligned_cols=15 Identities=13% Similarity=0.007 Sum_probs=11.2
Q ss_pred CCHHHHHHHhhccCc
Q 045845 4 KASRDRESKTYQLLR 18 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~ 18 (69)
++++.|+..+.+.|.
T Consensus 32 ine~mir~M~~QMG~ 46 (64)
T PF03672_consen 32 INEKMIRAMMMQMGR 46 (64)
T ss_pred CCHHHHHHHHHHhCC
Confidence 577788888877764
No 217
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=21.02 E-value=80 Score=19.06 Aligned_cols=17 Identities=6% Similarity=-0.207 Sum_probs=13.7
Q ss_pred cCCHHHHHHHhhccCce
Q 045845 3 GKASRDRESKTYQLLRL 19 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i 19 (69)
+.++++|..+|..||..
T Consensus 144 ~~~e~~L~~I~~~yGEE 160 (314)
T COG0275 144 TYSEEDLARIFKEYGEE 160 (314)
T ss_pred cCCHHHHHHHHHHhccH
Confidence 45788899999999865
No 218
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=20.99 E-value=1.3e+02 Score=18.62 Aligned_cols=31 Identities=10% Similarity=0.042 Sum_probs=21.5
Q ss_pred CHHHHHHHhhccCce-EEeeeCCCCCceeEEE
Q 045845 5 ASRDRESKTYQLLRL-SLLSKSLNRDSHGFGF 35 (69)
Q Consensus 5 ~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~f 35 (69)
++..|...|..-+.| -+...+.+|...||+-
T Consensus 100 NE~kLn~AF~~s~~ViLIFSVn~SghFQG~Ar 131 (441)
T KOG1902|consen 100 NEKKLNLAFRSSRSVILIFSVNESGHFQGFAR 131 (441)
T ss_pred cHHHHHHHHhhcCcEEEEEEecccccchhhhh
Confidence 567788889888877 4445566777666543
No 219
>PHA02564 V virion protein; Provisional
Probab=20.96 E-value=1.5e+02 Score=15.69 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=15.5
Q ss_pred eEEEEEEcCHHHHHHHHHh
Q 045845 32 GFGFLSLDRDEDADAAIRT 50 (69)
Q Consensus 32 g~~fv~~~~~~~a~~ai~~ 50 (69)
.-.|..|.+.+.-.+|+..
T Consensus 37 d~~F~~F~s~e~GiRAl~~ 55 (141)
T PHA02564 37 EPRFARFDTPHNGIRALAK 55 (141)
T ss_pred CCCeeecCCHHHHHHHHHH
Confidence 4589999999988888753
No 220
>COG5341 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.85 E-value=75 Score=16.51 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=13.4
Q ss_pred hhCCceeCCeEEEEEeec
Q 045845 50 TLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 50 ~l~~~~~~~~~i~v~~a~ 67 (69)
.+|..+++|.+|+|..++
T Consensus 70 ~~n~vev~g~~IRV~esN 87 (132)
T COG5341 70 FYNKVEVKGNRIRVVESN 87 (132)
T ss_pred ceEEEEEcCCEEEEEecC
Confidence 356667888888888765
No 221
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=20.65 E-value=1e+02 Score=19.10 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=16.8
Q ss_pred CccCCHHHHHHHhhccCce
Q 045845 1 MIGKASRDRESKTYQLLRL 19 (69)
Q Consensus 1 ~~~~~~~~l~~~f~~~g~i 19 (69)
|++.+|++|.+.+-.+|+|
T Consensus 269 ~l~~nE~~ia~wLv~~GPi 287 (372)
T KOG1542|consen 269 MLSNNEDQIAAWLVTFGPL 287 (372)
T ss_pred ecCCCHHHHHHHHHhcCCe
Confidence 4667899999999999999
No 222
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=20.41 E-value=95 Score=16.95 Aligned_cols=24 Identities=29% Similarity=0.711 Sum_probs=14.6
Q ss_pred CCCceeEEEEEEcCHHHHHHHHHhh
Q 045845 27 NRDSHGFGFLSLDRDEDADAAIRTL 51 (69)
Q Consensus 27 ~~~~~g~~fv~~~~~~~a~~ai~~l 51 (69)
+..+||++.|.+. .++...|+..+
T Consensus 110 N~~prGfgHIci~-V~di~sac~~l 133 (170)
T KOG2944|consen 110 NKEPRGFGHICIE-VDDINSACERL 133 (170)
T ss_pred CCCCCccceEEEE-eCCHHHHHHHH
Confidence 4456899999985 33444444444
No 223
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=20.20 E-value=94 Score=15.84 Aligned_cols=16 Identities=6% Similarity=-0.018 Sum_probs=12.6
Q ss_pred cCCHHHHHHHhhccCc
Q 045845 3 GKASRDRESKTYQLLR 18 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~ 18 (69)
.++.++|++.|..|-.
T Consensus 44 ~Tt~~eiedaF~~f~~ 59 (121)
T KOG3432|consen 44 KTTVEEIEDAFKSFTA 59 (121)
T ss_pred cCCHHHHHHHHHhhcc
Confidence 4678899999988743
Done!