Query 045845
Match_columns 69
No_of_seqs 102 out of 1502
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 10:20:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045845.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045845hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 2.2E-23 7.6E-28 100.6 9.7 68 2-69 29-99 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 1E-21 3.6E-26 96.3 9.7 67 2-68 16-85 (110)
3 2lkz_A RNA-binding protein 5; 99.9 4.6E-22 1.6E-26 95.5 6.3 67 2-68 19-94 (95)
4 3md1_A Nuclear and cytoplasmic 99.9 1.6E-20 5.5E-25 87.6 9.7 67 2-68 11-80 (83)
5 3p5t_L Cleavage and polyadenyl 99.9 1.1E-21 3.9E-26 93.0 5.8 67 2-68 11-82 (90)
6 3bs9_A Nucleolysin TIA-1 isofo 99.9 2.4E-20 8.3E-25 87.6 9.8 66 3-68 17-85 (87)
7 2lxi_A RNA-binding protein 10; 99.8 1.6E-21 5.6E-26 92.8 5.3 67 2-68 11-82 (91)
8 2cqc_A Arginine/serine-rich sp 99.8 4.6E-20 1.6E-24 87.9 9.7 67 2-68 25-94 (95)
9 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.5E-20 8.7E-25 87.2 8.2 65 3-67 18-85 (85)
10 3ns6_A Eukaryotic translation 99.8 2.6E-21 8.9E-26 93.4 4.7 66 3-68 23-92 (100)
11 3n9u_C Cleavage and polyadenyl 99.8 2.8E-20 9.7E-25 95.8 8.8 67 2-68 65-136 (156)
12 2x1f_A MRNA 3'-END-processing 99.8 4.5E-20 1.5E-24 88.3 8.6 67 2-68 12-81 (96)
13 2ek1_A RNA-binding protein 12; 99.8 5.4E-20 1.8E-24 87.7 8.5 67 2-68 25-94 (95)
14 2e5h_A Zinc finger CCHC-type a 99.8 6.6E-20 2.2E-24 87.2 8.3 65 3-67 27-94 (94)
15 3ucg_A Polyadenylate-binding p 99.8 8.9E-20 3E-24 86.0 8.6 66 2-68 16-84 (89)
16 2cq0_A Eukaryotic translation 99.8 7.6E-20 2.6E-24 88.4 8.5 67 2-68 25-94 (103)
17 2cqp_A RNA-binding protein 12; 99.8 9.7E-20 3.3E-24 87.3 8.7 67 2-68 25-94 (98)
18 2dgo_A Cytotoxic granule-assoc 99.8 1.6E-19 5.6E-24 88.6 9.7 67 2-68 25-94 (115)
19 2cpz_A CUG triplet repeat RNA- 99.8 9.1E-20 3.1E-24 89.6 8.8 67 2-68 35-104 (115)
20 2do4_A Squamous cell carcinoma 99.8 1.5E-19 5.1E-24 86.9 9.3 66 2-68 27-95 (100)
21 2dnz_A Probable RNA-binding pr 99.8 6.6E-20 2.3E-24 87.4 8.0 67 2-68 15-84 (95)
22 1whw_A Hypothetical protein ri 99.8 7.2E-20 2.5E-24 87.9 8.1 67 2-68 18-87 (99)
23 1p27_B RNA-binding protein 8A; 99.8 8.3E-20 2.8E-24 88.6 8.3 66 3-68 34-102 (106)
24 2jrs_A RNA-binding protein 39; 99.8 7.5E-20 2.6E-24 89.3 8.0 67 2-68 36-105 (108)
25 3ulh_A THO complex subunit 4; 99.8 2.6E-19 9.1E-24 86.9 9.7 66 2-68 39-107 (107)
26 2cqb_A Peptidyl-prolyl CIS-tra 99.8 6.1E-20 2.1E-24 88.5 7.2 67 2-68 22-91 (102)
27 2dgs_A DAZ-associated protein 99.8 1.3E-19 4.5E-24 87.0 7.9 66 2-68 20-88 (99)
28 4f25_A Polyadenylate-binding p 99.8 2.7E-19 9.3E-24 88.1 9.1 65 2-68 15-82 (115)
29 2ywk_A Putative RNA-binding pr 99.8 3.1E-19 1.1E-23 85.0 9.0 66 2-68 26-94 (95)
30 1oo0_B CG8781-PA, drosophila Y 99.8 1.5E-19 5.3E-24 88.1 8.0 66 3-68 37-105 (110)
31 2la6_A RNA-binding protein FUS 99.8 1.8E-19 6.1E-24 86.6 8.1 66 2-67 23-99 (99)
32 1p1t_A Cleavage stimulation fa 99.8 1.1E-19 3.9E-24 87.8 7.4 67 2-68 18-87 (104)
33 1x5u_A Splicing factor 3B subu 99.8 8.9E-20 3E-24 88.3 6.9 67 2-68 25-94 (105)
34 1x5t_A Splicing factor 3B subu 99.8 2.4E-19 8.2E-24 85.6 8.2 67 2-68 15-85 (96)
35 2khc_A Testis-specific RNP-typ 99.8 1E-19 3.5E-24 89.7 7.1 66 2-67 50-118 (118)
36 2dnm_A SRP46 splicing factor; 99.8 6.6E-20 2.3E-24 88.6 6.3 67 2-68 23-92 (103)
37 2cpf_A RNA binding motif prote 99.8 2.2E-19 7.5E-24 86.0 8.1 67 2-68 15-87 (98)
38 1u6f_A Tcubp1, RNA-binding pro 99.8 2.5E-19 8.5E-24 90.4 8.6 67 2-68 52-121 (139)
39 2jwn_A Embryonic polyadenylate 99.8 4.8E-19 1.6E-23 87.9 9.5 66 2-68 46-114 (124)
40 1x5s_A Cold-inducible RNA-bind 99.8 7.8E-20 2.7E-24 88.1 6.3 67 2-68 22-91 (102)
41 4a8x_A RNA-binding protein wit 99.8 1.8E-19 6.2E-24 84.7 7.4 67 2-68 14-84 (88)
42 1h2v_Z 20 kDa nuclear CAP bind 99.8 6.4E-19 2.2E-23 90.4 9.9 67 2-68 49-118 (156)
43 2kxn_B Transformer-2 protein h 99.8 1.4E-19 4.9E-24 90.7 7.2 67 2-68 56-125 (129)
44 1x4h_A RNA-binding protein 28; 99.8 2.7E-19 9.4E-24 87.3 8.0 67 2-68 25-100 (111)
45 2dng_A Eukaryotic translation 99.8 5.9E-19 2E-23 85.2 9.0 65 2-68 25-92 (103)
46 3s7r_A Heterogeneous nuclear r 99.8 1.1E-18 3.9E-23 82.0 9.2 64 2-66 21-87 (87)
47 2wbr_A GW182, gawky, LD47780P; 99.8 4.4E-19 1.5E-23 83.7 7.6 61 3-67 18-79 (89)
48 2cph_A RNA binding motif prote 99.8 3.2E-19 1.1E-23 86.5 7.4 67 2-68 25-96 (107)
49 2cq4_A RNA binding motif prote 99.8 2.1E-19 7.1E-24 88.2 6.8 66 2-68 35-103 (114)
50 2fy1_A RNA-binding motif prote 99.8 3E-19 1E-23 88.1 7.3 66 2-68 17-85 (116)
51 2kn4_A Immunoglobulin G-bindin 99.8 2.6E-19 8.9E-24 91.9 7.3 67 2-68 80-149 (158)
52 2fc8_A NCL protein; structure 99.8 8.2E-19 2.8E-23 84.5 8.6 67 2-68 25-91 (102)
53 2kt5_A RNA and export factor-b 99.8 9E-19 3.1E-23 87.0 8.8 66 2-68 45-113 (124)
54 2pe8_A Splicing factor 45; RRM 99.8 1.5E-18 5E-23 84.5 9.2 64 5-68 26-93 (105)
55 2dgp_A Bruno-like 4, RNA bindi 99.8 2.3E-19 8E-24 87.0 6.4 67 2-68 23-95 (106)
56 3q2s_C Cleavage and polyadenyl 99.8 2.7E-19 9.1E-24 96.8 7.2 67 2-68 78-149 (229)
57 2mss_A Protein (musashi1); RNA 99.8 1.3E-19 4.5E-24 83.2 5.0 64 2-66 9-75 (75)
58 2j8a_A Histone-lysine N-methyl 99.8 5.3E-19 1.8E-23 88.5 7.5 66 2-67 16-94 (136)
59 2dnh_A Bruno-like 5, RNA bindi 99.8 1E-18 3.5E-23 84.6 8.3 66 2-68 25-96 (105)
60 1wi8_A EIF-4B, eukaryotic tran 99.8 6.2E-19 2.1E-23 85.3 7.5 65 2-68 25-93 (104)
61 2d9p_A Polyadenylate-binding p 99.8 8.9E-19 3E-23 84.6 8.0 65 2-68 25-92 (103)
62 2div_A TRNA selenocysteine ass 99.8 5.5E-19 1.9E-23 84.8 7.1 67 2-68 19-93 (99)
63 2fc9_A NCL protein; structure 99.8 7.6E-19 2.6E-23 84.6 7.6 66 2-68 25-90 (101)
64 2dh8_A DAZ-associated protein 99.8 6.7E-19 2.3E-23 85.3 7.4 66 2-68 26-94 (105)
65 2do0_A HnRNP M, heterogeneous 99.8 2.7E-18 9.3E-23 84.1 9.6 66 2-68 25-93 (114)
66 2cqd_A RNA-binding region cont 99.8 9.6E-19 3.3E-23 86.0 7.9 66 2-68 27-95 (116)
67 2dgv_A HnRNP M, heterogeneous 99.8 8.1E-19 2.8E-23 83.1 7.3 67 2-68 18-85 (92)
68 3ex7_B RNA-binding protein 8A; 99.8 4.1E-19 1.4E-23 88.4 6.5 67 2-68 32-101 (126)
69 2cpi_A CCR4-NOT transcription 99.8 1E-18 3.5E-23 85.5 7.8 67 2-68 25-100 (111)
70 2dgx_A KIAA0430 protein; RRM d 99.8 1.2E-18 4E-23 83.4 7.8 64 2-68 19-89 (96)
71 2ki2_A SS-DNA binding protein 99.8 9.1E-20 3.1E-24 86.2 3.8 66 2-68 11-79 (90)
72 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.1E-18 7.3E-23 89.3 9.2 67 2-68 82-151 (165)
73 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 9.1E-19 3.1E-23 88.2 7.6 65 2-66 73-140 (140)
74 1s79_A Lupus LA protein; RRM, 99.8 6.3E-19 2.1E-23 85.5 6.5 64 2-67 21-87 (103)
75 1x4b_A Heterogeneous nuclear r 99.8 1.4E-18 4.9E-23 85.4 7.8 66 2-68 37-105 (116)
76 3md3_A Nuclear and cytoplasmic 99.8 3.9E-18 1.3E-22 87.3 9.7 66 3-68 98-166 (166)
77 2dhg_A TRNA selenocysteine ass 99.8 7.5E-19 2.6E-23 84.9 6.5 66 2-68 19-89 (104)
78 2cqi_A Nucleolysin TIAR; RNA r 99.8 5.2E-18 1.8E-22 81.9 9.4 64 3-68 26-92 (103)
79 1wel_A RNA-binding protein 12; 99.8 4.4E-19 1.5E-23 88.2 5.7 66 2-68 35-103 (124)
80 1x4e_A RNA binding motif, sing 99.8 6.9E-20 2.3E-24 85.9 2.6 67 2-68 15-84 (85)
81 2dgw_A Probable RNA-binding pr 99.8 4.4E-18 1.5E-22 80.6 8.8 64 2-68 20-86 (91)
82 2rs2_A Musashi-1, RNA-binding 99.8 2.3E-18 7.8E-23 84.1 8.0 66 2-68 35-103 (109)
83 1uaw_A Mouse-musashi-1; RNP-ty 99.8 5.3E-19 1.8E-23 81.4 5.3 64 2-66 10-76 (77)
84 2cq3_A RNA-binding protein 9; 99.8 8.9E-18 3.1E-22 81.0 9.9 65 2-68 25-92 (103)
85 2db1_A Heterogeneous nuclear r 99.8 2.1E-18 7.2E-23 85.3 7.8 64 2-67 27-96 (118)
86 2m2b_A RNA-binding protein 10; 99.8 1.2E-19 4.2E-24 91.0 3.3 66 2-68 33-107 (131)
87 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.9E-19 1E-23 86.0 4.4 65 2-68 29-97 (100)
88 2cqg_A TDP-43, TAR DNA-binding 99.8 8.7E-18 3E-22 81.1 9.6 65 2-68 25-92 (103)
89 1wez_A HnRNP H', FTP-3, hetero 99.8 8.2E-19 2.8E-23 84.9 5.8 65 2-68 25-91 (102)
90 2hgl_A HNRPF protein, heteroge 99.8 1.3E-18 4.5E-23 88.0 6.6 65 2-68 54-124 (136)
91 2err_A Ataxin-2-binding protei 99.8 2.7E-18 9.2E-23 83.8 7.3 64 3-68 40-106 (109)
92 2dis_A Unnamed protein product 99.8 1.8E-18 6.3E-23 84.1 6.5 67 2-68 18-91 (109)
93 2nlw_A Eukaryotic translation 99.8 2.1E-18 7.2E-23 83.7 6.7 64 5-68 34-99 (105)
94 2cpe_A RNA-binding protein EWS 99.8 3.1E-18 1E-22 83.8 7.2 67 2-68 25-102 (113)
95 1x5o_A RNA binding motif, sing 99.8 4.6E-18 1.6E-22 83.3 7.8 66 2-68 35-111 (114)
96 1x4a_A Splicing factor, argini 99.8 1.2E-17 4E-22 81.4 9.0 66 2-68 32-98 (109)
97 2lea_A Serine/arginine-rich sp 99.8 5.3E-19 1.8E-23 89.2 4.3 66 3-68 58-126 (135)
98 1fj7_A Nucleolin RBD1, protein 99.8 1.5E-19 5E-24 87.1 2.1 66 2-68 27-94 (101)
99 1fjc_A Nucleolin RBD2, protein 99.8 3.2E-18 1.1E-22 81.7 6.4 64 2-68 26-90 (96)
100 2g4b_A Splicing factor U2AF 65 99.8 1.3E-17 4.4E-22 86.0 9.0 65 3-67 105-172 (172)
101 2krb_A Eukaryotic translation 99.8 1.3E-18 4.4E-23 81.0 4.5 59 5-63 20-80 (81)
102 2qfj_A FBP-interacting repress 99.8 1.2E-17 4.2E-22 88.6 8.8 66 3-68 136-204 (216)
103 2cpy_A RNA-binding protein 12; 99.8 4.6E-18 1.6E-22 83.5 6.6 65 2-68 25-93 (114)
104 2a3j_A U1 small nuclear ribonu 99.8 8.3E-18 2.9E-22 84.2 7.6 65 3-68 40-109 (127)
105 3egn_A RNA-binding protein 40; 99.7 3E-18 1E-22 86.8 5.9 67 2-68 55-129 (143)
106 1x5p_A Negative elongation fac 99.7 1.9E-17 6.4E-22 79.2 8.3 62 3-68 24-86 (97)
107 2dnn_A RNA-binding protein 12; 99.7 9.4E-18 3.2E-22 82.1 7.4 63 2-67 26-91 (109)
108 1fxl_A Paraneoplastic encephal 99.7 3.2E-17 1.1E-21 83.9 9.7 67 2-68 12-81 (167)
109 1iqt_A AUF1, heterogeneous nuc 99.7 9.5E-19 3.2E-23 80.2 3.6 64 2-66 9-75 (75)
110 2yh0_A Splicing factor U2AF 65 99.7 2.1E-17 7.2E-22 86.7 8.8 66 3-68 125-193 (198)
111 1wg5_A Heterogeneous nuclear r 99.7 8E-18 2.8E-22 81.5 6.5 65 2-68 25-93 (104)
112 2jvr_A Nucleolar protein 3; RN 99.7 2.2E-17 7.4E-22 81.0 7.8 65 2-68 38-104 (111)
113 3pgw_S U1-70K; protein-RNA com 99.7 1.9E-17 6.6E-22 96.2 8.7 67 2-68 112-181 (437)
114 3v4m_A Splicing factor U2AF 65 99.7 1.6E-17 5.5E-22 80.8 7.0 63 6-68 29-96 (105)
115 3r27_A HnRNP L, heterogeneous 99.7 3E-17 1E-21 79.2 7.8 63 2-68 31-96 (100)
116 4f02_A Polyadenylate-binding p 99.7 6.4E-17 2.2E-21 86.3 9.8 67 2-68 25-94 (213)
117 1b7f_A Protein (SXL-lethal pro 99.7 3.3E-17 1.1E-21 84.1 8.3 67 2-68 13-82 (168)
118 1jmt_A Splicing factor U2AF 35 99.7 4E-17 1.4E-21 79.3 8.0 59 7-66 41-103 (104)
119 2f3j_A RNA and export factor b 99.7 1.6E-17 5.3E-22 87.0 7.1 66 2-68 98-166 (177)
120 2cjk_A Nuclear polyadenylated 99.7 1.1E-17 3.7E-22 85.9 6.3 66 2-68 97-165 (167)
121 2cpx_A Hypothetical protein FL 99.7 3.5E-18 1.2E-22 83.8 4.3 67 2-68 35-104 (115)
122 3zzy_A Polypyrimidine tract-bi 99.7 9.6E-17 3.3E-21 80.6 9.4 64 2-68 38-105 (130)
123 2e5j_A Methenyltetrahydrofolat 99.7 2.1E-17 7.2E-22 79.1 6.7 63 2-68 29-93 (97)
124 2lmi_A GRSF-1, G-rich sequence 99.7 2.8E-18 9.5E-23 83.5 3.4 65 2-68 21-91 (107)
125 4f02_A Polyadenylate-binding p 99.7 5.3E-17 1.8E-21 86.7 8.5 65 2-68 113-180 (213)
126 1sjq_A Polypyrimidine tract-bi 99.7 1.6E-17 5.3E-22 80.8 5.7 63 2-68 26-91 (105)
127 3ue2_A Poly(U)-binding-splicin 99.7 5.3E-17 1.8E-21 80.4 7.5 63 6-68 39-108 (118)
128 1nu4_A U1A RNA binding domain; 99.7 2.3E-17 7.8E-22 78.8 6.0 65 3-68 19-88 (97)
129 2e5g_A U6 snRNA-specific termi 99.7 5.1E-17 1.7E-21 77.3 7.1 63 2-68 18-81 (94)
130 2xs2_A Deleted in azoospermia- 99.7 3.1E-17 1.1E-21 79.0 6.4 63 2-67 19-84 (102)
131 2xnq_A Nuclear polyadenylated 99.7 1.6E-16 5.5E-21 76.1 8.8 60 3-68 34-94 (97)
132 1sjr_A Polypyrimidine tract-bi 99.7 6.1E-17 2.1E-21 83.9 7.8 65 2-68 56-123 (164)
133 1l3k_A Heterogeneous nuclear r 99.7 1.3E-16 4.5E-21 83.6 9.2 66 2-68 114-182 (196)
134 1x4c_A Splicing factor, argini 99.7 9.8E-17 3.3E-21 78.1 7.9 62 2-68 25-92 (108)
135 1b7f_A Protein (SXL-lethal pro 99.7 1.1E-16 3.7E-21 82.1 8.4 64 3-66 100-168 (168)
136 3lqv_A PRE-mRNA branch site pr 99.7 4.9E-17 1.7E-21 79.7 6.7 66 2-68 18-84 (115)
137 1whx_A Hypothetical protein ri 99.7 7.4E-17 2.5E-21 79.0 7.2 63 2-68 20-83 (111)
138 1why_A Hypothetical protein ri 99.7 1.2E-16 4E-21 76.4 7.8 63 2-68 27-92 (97)
139 1fje_B Nucleolin RBD12, protei 99.7 1.1E-16 3.7E-21 82.8 8.2 65 2-68 109-173 (175)
140 2lcw_A RNA-binding protein FUS 99.5 8.5E-19 2.9E-23 86.3 0.0 66 3-68 18-94 (116)
141 1x4g_A Nucleolysin TIAR; struc 99.7 1.7E-16 5.8E-21 77.3 8.1 62 3-68 36-98 (109)
142 2la4_A Nuclear and cytoplasmic 99.7 4.7E-17 1.6E-21 78.2 6.1 63 2-68 37-100 (101)
143 2dit_A HIV TAT specific factor 99.7 2E-16 6.8E-21 77.5 8.4 60 6-68 40-101 (112)
144 2cq1_A PTB-like protein L; RRM 99.7 2.5E-16 8.7E-21 76.1 8.5 63 2-68 25-90 (101)
145 2cq2_A Hypothetical protein LO 99.7 1.4E-16 4.8E-21 78.5 7.5 63 2-68 37-105 (114)
146 2bz2_A Negative elongation fac 99.7 9.1E-17 3.1E-21 79.8 6.9 63 2-68 47-110 (121)
147 2dnq_A RNA-binding protein 4B; 99.7 2E-16 6.8E-21 74.7 7.6 61 2-68 18-79 (90)
148 2dha_A FLJ20171 protein; RRM d 99.7 4.8E-17 1.6E-21 81.1 5.6 64 2-67 33-103 (123)
149 2hvz_A Splicing factor, argini 99.7 2.8E-17 9.7E-22 79.0 4.6 64 2-68 10-74 (101)
150 1fxl_A Paraneoplastic encephal 99.7 2.7E-16 9.1E-21 80.5 8.4 64 3-66 99-167 (167)
151 2ytc_A PRE-mRNA-splicing facto 99.7 2.8E-16 9.5E-21 73.4 7.8 61 3-67 23-85 (85)
152 2jvo_A Nucleolar protein 3; nu 99.7 1.7E-16 5.8E-21 77.4 7.3 61 2-68 41-102 (108)
153 2e5i_A Heterogeneous nuclear r 99.7 2.9E-16 9.8E-21 78.3 8.2 62 2-68 35-101 (124)
154 2hgn_A Heterogeneous nuclear r 99.7 6E-18 2E-22 85.8 2.1 65 2-68 56-122 (139)
155 1l3k_A Heterogeneous nuclear r 99.7 5.4E-16 1.8E-20 81.2 9.6 66 2-68 23-91 (196)
156 2i2y_A Fusion protein consists 99.7 7.1E-17 2.4E-21 82.3 5.9 64 2-68 83-147 (150)
157 2cpj_A Non-POU domain-containi 99.7 1.7E-16 5.7E-21 76.1 6.7 62 3-68 26-88 (99)
158 2ad9_A Polypyrimidine tract-bi 99.7 1.1E-16 3.7E-21 79.4 6.1 61 2-68 41-106 (119)
159 1wf1_A RNA-binding protein RAL 99.7 1.9E-16 6.6E-21 77.2 6.8 59 4-68 40-99 (110)
160 1wex_A Hypothetical protein (r 99.7 1.6E-16 5.6E-21 77.1 6.5 63 2-68 25-90 (104)
161 2cqh_A IGF-II mRNA-binding pro 99.7 1.4E-16 4.9E-21 75.5 6.0 61 2-68 18-82 (93)
162 1x4d_A Matrin 3; structural ge 99.7 6.1E-17 2.1E-21 78.4 4.8 62 3-68 27-91 (102)
163 2dgu_A Heterogeneous nuclear r 99.7 6E-16 2.1E-20 74.6 8.0 60 3-68 22-82 (103)
164 2qfj_A FBP-interacting repress 99.7 2.6E-16 9E-21 83.4 7.4 67 2-68 38-107 (216)
165 2ghp_A U4/U6 snRNA-associated 99.7 4.1E-16 1.4E-20 86.1 8.1 64 4-68 223-290 (292)
166 3md3_A Nuclear and cytoplasmic 99.7 1.6E-15 5.6E-20 77.5 9.8 66 2-68 10-78 (166)
167 2kvi_A Nuclear polyadenylated 99.7 2.2E-16 7.6E-21 75.4 6.1 60 3-68 22-82 (96)
168 2dgt_A RNA-binding protein 30; 99.7 1.9E-15 6.6E-20 71.5 9.0 61 2-68 20-81 (92)
169 3nmr_A Cugbp ELAV-like family 99.7 8.7E-16 3E-20 79.1 8.4 65 2-67 105-175 (175)
170 2cpd_A Apobec-1 stimulating pr 99.7 1.5E-15 5.2E-20 72.7 8.7 61 2-68 25-88 (99)
171 3smz_A Protein raver-1, ribonu 99.7 1.4E-15 4.8E-20 83.7 9.6 67 2-68 105-174 (284)
172 2e44_A Insulin-like growth fac 99.7 3.5E-16 1.2E-20 74.5 6.3 63 2-68 25-91 (96)
173 3s6e_A RNA-binding protein 39; 99.7 3.7E-16 1.3E-20 77.0 6.5 60 7-68 32-92 (114)
174 1wg1_A KIAA1579 protein, homol 99.7 6.4E-16 2.2E-20 72.8 6.9 62 2-68 15-77 (88)
175 2hgm_A HNRPF protein, heteroge 99.7 1.1E-16 3.7E-21 80.1 4.4 64 2-67 52-119 (126)
176 3tyt_A Heterogeneous nuclear r 99.7 6.3E-16 2.2E-20 82.4 7.3 63 2-67 15-78 (205)
177 3smz_A Protein raver-1, ribonu 99.6 1.3E-15 4.5E-20 83.8 8.4 64 4-68 197-263 (284)
178 2dnp_A RNA-binding protein 14; 99.6 2.1E-15 7.2E-20 71.1 8.0 61 2-68 19-80 (90)
179 2d9o_A DNAJ (HSP40) homolog, s 99.6 1.3E-15 4.5E-20 73.5 7.3 61 3-68 28-89 (100)
180 2voo_A Lupus LA protein; RNA-b 99.6 4.2E-15 1.4E-19 78.7 9.2 65 2-68 119-186 (193)
181 1x4f_A Matrin 3; structural ge 99.6 2.2E-16 7.5E-21 77.6 3.9 61 4-68 38-101 (112)
182 3beg_B Splicing factor, argini 99.6 9.5E-16 3.2E-20 75.4 5.8 61 2-67 26-92 (115)
183 2dnl_A Cytoplasmic polyadenyla 99.6 1.1E-15 3.7E-20 75.0 5.9 50 2-51 18-72 (114)
184 2diu_A KIAA0430 protein; struc 99.6 1.4E-15 4.7E-20 72.5 6.0 58 3-68 20-83 (96)
185 3pgw_A U1-A; protein-RNA compl 99.6 5.9E-15 2E-19 81.1 9.1 66 2-68 19-89 (282)
186 3nmr_A Cugbp ELAV-like family 99.6 6.7E-15 2.3E-19 75.8 8.1 66 2-67 13-86 (175)
187 2cjk_A Nuclear polyadenylated 99.6 3E-15 1E-19 76.7 6.2 65 2-68 13-80 (167)
188 1fje_B Nucleolin RBD12, protei 99.6 6.3E-16 2.2E-20 79.9 3.1 66 2-68 23-90 (175)
189 3d2w_A TAR DNA-binding protein 99.6 1.3E-14 4.5E-19 68.5 7.0 60 2-68 21-83 (89)
190 2hzc_A Splicing factor U2AF 65 99.6 2.7E-14 9.3E-19 66.7 7.4 59 2-65 16-86 (87)
191 3pgw_A U1-A; protein-RNA compl 99.6 3E-14 1E-18 78.3 8.3 63 3-68 218-282 (282)
192 2ghp_A U4/U6 snRNA-associated 99.5 2.6E-14 9E-19 78.8 6.8 66 2-68 127-196 (292)
193 2adc_A Polypyrimidine tract-bi 99.5 1.9E-14 6.4E-19 77.5 6.0 61 3-68 46-109 (229)
194 3sde_A Paraspeckle component 1 99.5 9.3E-14 3.2E-18 76.0 8.5 66 2-68 106-178 (261)
195 2yh0_A Splicing factor U2AF 65 99.5 4.4E-15 1.5E-19 77.8 2.8 66 2-68 14-87 (198)
196 3u1l_A PRE-mRNA-splicing facto 99.5 4.3E-14 1.5E-18 77.0 6.2 58 5-68 156-228 (240)
197 3tht_A Alkylated DNA repair pr 99.5 1.5E-13 5.1E-18 78.1 8.2 62 2-67 30-97 (345)
198 1qm9_A Polypyrimidine tract-bi 99.5 1.9E-14 6.5E-19 75.7 4.2 63 3-68 15-78 (198)
199 1qm9_A Polypyrimidine tract-bi 99.5 7E-14 2.4E-18 73.5 6.2 64 3-69 131-197 (198)
200 3sde_A Paraspeckle component 1 99.5 1.3E-13 4.6E-18 75.4 7.6 63 2-68 32-95 (261)
201 2adc_A Polypyrimidine tract-bi 99.5 1.9E-13 6.5E-18 73.5 7.7 64 3-69 162-228 (229)
202 3tyt_A Heterogeneous nuclear r 99.5 2E-13 6.9E-18 72.7 7.4 64 2-65 133-203 (205)
203 2g4b_A Splicing factor U2AF 65 99.5 1.7E-14 5.8E-19 74.2 3.1 63 2-68 14-87 (172)
204 3dxb_A Thioredoxin N-terminall 99.5 4.2E-13 1.4E-17 71.9 7.8 62 6-67 143-211 (222)
205 1wf0_A TDP-43, TAR DNA-binding 99.4 6.6E-14 2.2E-18 65.7 3.4 62 2-68 15-77 (88)
206 2dnr_A Synaptojanin-1; RRM dom 99.4 1.4E-12 4.8E-17 61.7 6.8 53 7-68 30-85 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 6.3E-11 2.1E-15 56.3 4.8 52 7-67 39-93 (95)
208 1owx_A Lupus LA protein, SS-B, 98.9 7.5E-09 2.5E-13 51.3 5.5 59 4-66 31-93 (121)
209 2l9w_A U4/U6 snRNA-associated- 98.6 4.2E-07 1.4E-11 44.3 7.1 58 4-65 33-96 (117)
210 1wey_A Calcipressin 1; structu 98.3 6.9E-06 2.3E-10 39.6 6.5 59 7-69 25-84 (104)
211 3p3d_A Nucleoporin 53; structu 97.8 6.7E-05 2.3E-09 37.6 4.5 59 7-66 21-96 (132)
212 1wwh_A Nucleoporin 35, nucleop 97.7 0.00077 2.6E-08 33.3 7.8 54 7-65 38-93 (119)
213 1whv_A Poly(A)-specific ribonu 97.5 0.00059 2E-08 32.6 5.5 41 4-51 27-69 (100)
214 2i2y_A Fusion protein consists 97.5 5.3E-05 1.8E-09 38.2 1.7 40 28-68 10-50 (150)
215 2kn4_A Immunoglobulin G-bindin 97.3 0.00032 1.1E-08 35.4 3.6 32 20-53 4-35 (158)
216 3ctr_A Poly(A)-specific ribonu 97.3 0.00054 1.8E-08 32.8 4.0 42 4-52 17-60 (101)
217 3pq1_A Poly(A) RNA polymerase; 96.8 0.00083 2.9E-08 39.9 2.7 44 3-49 63-107 (464)
218 1uw4_A UPF3X; nonsense mediate 95.3 0.081 2.8E-06 24.8 7.3 56 3-58 12-72 (91)
219 2dhx_A Poly (ADP-ribose) polym 94.7 0.15 5.3E-06 24.5 7.4 56 3-65 19-80 (104)
220 2g0c_A ATP-dependent RNA helic 93.3 0.18 6.1E-06 22.4 3.6 35 32-67 41-75 (76)
221 3d45_A Poly(A)-specific ribonu 91.6 0.65 2.2E-05 28.1 5.4 46 4-54 451-496 (507)
222 2l08_A Regulator of nonsense t 87.4 0.99 3.4E-05 21.4 3.3 56 3-58 20-80 (97)
223 1ytr_A Bacteriocin plantaricin 74.3 1.3 4.5E-05 15.3 0.8 13 5-17 13-25 (26)
224 2od0_A Hypothetical protein VP 66.8 5.8 0.0002 18.6 2.5 19 1-19 1-19 (105)
225 3lpe_A Putative transcription 59.4 11 0.00039 17.3 2.7 25 30-54 49-73 (92)
226 3h7h_B Transcription elongatio 59.0 8.9 0.0003 18.3 2.3 25 30-54 50-74 (106)
227 4e8u_A Putative uncharacterize 54.5 22 0.00075 18.6 5.2 45 3-49 32-81 (172)
228 2keb_A DNA polymerase subunit 53.4 7.5 0.00026 18.6 1.5 19 1-19 23-41 (101)
229 3mfb_A Uncharacterized protein 51.4 24 0.00082 18.2 4.6 34 4-37 3-42 (157)
230 2l2l_B Methyl-CPG-binding doma 49.1 12 0.0004 14.4 1.5 10 2-11 5-14 (36)
231 3p8b_B Transcription antitermi 44.4 28 0.00097 17.3 2.9 25 30-54 42-66 (152)
232 3ts2_A Protein LIN-28 homolog 43.9 7.1 0.00024 19.7 0.6 28 7-39 2-29 (148)
233 2exu_A Transcription initiatio 42.5 21 0.00072 19.1 2.3 25 30-54 148-172 (200)
234 3da5_A Argonaute; PAZ domain, 39.8 21 0.00071 17.2 1.8 25 10-34 86-115 (128)
235 4e2i_2 DNA polymerase alpha su 35.9 28 0.00097 15.8 1.9 16 4-19 3-18 (78)
236 3a0j_A Cold shock protein; OB- 32.5 18 0.00062 15.8 1.0 11 30-40 12-22 (73)
237 2k5n_A Putative cold-shock pro 32.2 25 0.00085 15.5 1.4 11 30-40 13-23 (74)
238 1ik9_C DNA ligase IV; DNA END 31.7 28 0.00096 13.2 2.0 14 3-16 21-34 (37)
239 1h95_A CSD, Y-box binding prot 31.6 19 0.00065 16.1 1.0 11 30-40 19-29 (79)
240 1g6p_A Cold shock protein TMCS 31.6 19 0.00066 15.4 1.0 11 30-40 11-21 (66)
241 2kcm_A Cold shock domain famil 31.0 27 0.00092 15.4 1.4 11 30-40 11-21 (74)
242 1c9o_A CSPB, cold-shock protei 30.7 28 0.00095 14.8 1.4 11 30-40 12-22 (66)
243 3cam_A Cold-shock domain famil 30.4 28 0.00097 14.9 1.4 11 30-40 12-22 (67)
244 4eyt_A Telomerase associated p 29.7 50 0.0017 15.5 4.3 32 32-63 47-85 (129)
245 2w84_A Peroxisomal membrane pr 29.5 31 0.0011 15.3 1.4 16 3-18 46-61 (70)
246 1ywx_A 30S ribosomal protein S 29.4 53 0.0018 15.6 3.1 42 3-45 29-78 (102)
247 1xn9_A 30S ribosomal protein S 28.9 53 0.0018 15.6 3.6 42 3-45 29-78 (101)
248 3ulj_A LIN28B, DNA-binding pro 28.8 23 0.00077 16.4 1.0 8 30-37 19-26 (90)
249 3i2z_B RNA chaperone, negative 28.1 33 0.0011 14.9 1.4 11 30-40 16-26 (71)
250 1fme_A FSD-EY peptide; beta-BE 27.8 28 0.00097 12.0 1.4 12 5-16 14-25 (28)
251 1jei_A Emerin; membrane protei 27.7 42 0.0014 14.0 1.8 16 3-18 5-20 (53)
252 2ytx_A Cold shock domain-conta 27.1 28 0.00096 16.2 1.1 11 30-40 27-37 (97)
253 2yty_A Cold shock domain-conta 27.0 29 0.00098 15.9 1.1 10 31-40 28-37 (88)
254 2nn4_A Hypothetical protein YQ 25.6 35 0.0012 15.2 1.2 15 5-19 4-18 (72)
255 2lsl_A Telomerase associated p 31.4 15 0.00051 17.5 0.0 23 31-53 77-99 (137)
256 1wfq_A UNR protein; beta-barre 24.9 44 0.0015 15.3 1.6 10 31-40 28-37 (89)
257 2v94_A RPS24, 30S ribosomal pr 24.1 70 0.0024 15.3 3.0 42 3-45 38-87 (107)
258 3aqq_A Calcium-regulated heat 23.9 39 0.0013 17.2 1.4 11 30-40 73-83 (147)
259 3g4p_A Beta-lactamase OXA-24; 23.6 44 0.0015 18.2 1.6 25 6-30 8-34 (244)
260 2ytv_A Cold shock domain-conta 23.5 31 0.0011 15.4 0.9 10 31-40 18-27 (79)
261 2lss_A Cold shock-like protein 28.1 18 0.00062 15.7 0.0 11 30-40 15-25 (70)
262 4b79_A PA4098, probable short- 22.5 84 0.0029 17.1 2.6 20 5-24 65-85 (242)
263 2lfv_A Protein DAMX; cell divi 28.0 18 0.00063 17.2 0.0 21 35-55 68-88 (106)
264 3a1y_A 50S ribosomal protein P 21.5 60 0.0021 13.6 1.7 15 3-17 16-30 (58)
265 2bu3_A ALR0975 protein; phytoc 21.4 49 0.0017 18.4 1.5 16 23-38 235-250 (254)
266 1x65_A UNR protein; cell-free 20.8 28 0.00097 16.0 0.5 10 31-40 18-27 (89)
267 2cpq_A FragIle X mental retard 20.7 79 0.0027 14.6 2.2 48 3-54 20-78 (91)
268 3uip_D E3 SUMO-protein ligase 20.2 26 0.0009 15.4 0.3 18 39-56 44-61 (67)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.91 E-value=2.2e-23 Score=100.60 Aligned_cols=68 Identities=21% Similarity=0.329 Sum_probs=64.4
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecCC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~~ 69 (69)
.++++++|+++|++||.| .++.++.+|.++|||||.|.+.++|.+|+..|||..++|++|+|++|+|.
T Consensus 29 ~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkPS 99 (99)
T 4fxv_A 29 QNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS 99 (99)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCBC
T ss_pred CCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeCC
Confidence 368999999999999999 78888899999999999999999999999999999999999999999985
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.88 E-value=1e-21 Score=96.28 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=63.0
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.+++++|||||+|.+.++|.+|+..|||..++|+.|+|.+++.
T Consensus 16 ~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 16 DNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp TTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred CCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 468999999999999999 7888999999999999999999999999999999999999999998864
No 3
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.87 E-value=4.6e-22 Score=95.46 Aligned_cols=67 Identities=21% Similarity=0.312 Sum_probs=61.7
Q ss_pred ccCCHHHHHHHhhccCce-----EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCc----eeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-----SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDET----EWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-----~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~----~~~~~~i~v~~a~~ 68 (69)
+++++++|+++|++||.+ +++.|+.+|+++|||||+|.+.++|.+|+..+||. .++|++|.|++|++
T Consensus 19 ~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 19 PHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp TTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred CcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 478999999999999964 77889999999999999999999999999999997 58999999999986
No 4
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.86 E-value=1.6e-20 Score=87.60 Aligned_cols=67 Identities=16% Similarity=0.346 Sum_probs=62.7
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++.++|+|||.|.+.++|..|+..|||..++|++|+|+.+++
T Consensus 11 ~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 11 VNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp TTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 367899999999999999 6778888999999999999999999999999999999999999999876
No 5
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.86 E-value=1.1e-21 Score=93.01 Aligned_cols=67 Identities=16% Similarity=0.237 Sum_probs=60.3
Q ss_pred ccCCHHHHHHHhhccC--ce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLL--RL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g--~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++|| .+ .++.++.+|+++|||||+|.+.++|.+|+..+||..++|+.|+|..+++
T Consensus 11 ~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~ 82 (90)
T 3p5t_L 11 WWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNK 82 (90)
T ss_dssp TTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC--
T ss_pred CCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCC
Confidence 4689999999999999 77 7888889999999999999999999999999999999999999998875
No 6
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=2.4e-20 Score=87.64 Aligned_cols=66 Identities=20% Similarity=0.264 Sum_probs=61.5
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++|+++|++||.| .++.++.++.++|||||+|.+.++|..|+..|||..++|+.|+|+++++
T Consensus 17 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 17 EITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred CCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 67999999999999999 7777878999999999999999999999999999999999999999875
No 7
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-21 Score=92.76 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=60.6
Q ss_pred ccCCHHHHHHHhhccC-ce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhh-CCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLL-RL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTL-DETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g-~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l-~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++|| .| +++.++.+|.++|||||+|.+.++|.+|+..+ ++..++|++|+|++|+|
T Consensus 11 ~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~ 82 (91)
T 2lxi_A 11 QAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDP 82 (91)
T ss_dssp SSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCS
T ss_pred CCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCC
Confidence 4689999999999999 67 67888899999999999999999999999977 45689999999999876
No 8
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.6e-20 Score=87.87 Aligned_cols=67 Identities=25% Similarity=0.350 Sum_probs=62.5
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++.++|+|||+|.+.++|.+|+..|||..+.|+.|+|+++++
T Consensus 25 ~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 25 LYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp SSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred CCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 367899999999999999 7778888899999999999999999999999999999999999999875
No 9
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.84 E-value=2.5e-20 Score=87.24 Aligned_cols=65 Identities=25% Similarity=0.340 Sum_probs=61.0
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
++++++|+++|++||.| .++.++.++.++|+|||+|.+.++|..|+..+||..++|+.|+|++|+
T Consensus 18 ~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 18 EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp TCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 67899999999999999 677788899999999999999999999999999999999999999885
No 10
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.84 E-value=2.6e-21 Score=93.36 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=61.5
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCC-eEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNG-RIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~-~~i~v~~a~~ 68 (69)
++++++|+++|++||.| .++.++.+|+++|||||+|.+.++|.+|+..|||..+.| +.|+|..+++
T Consensus 23 ~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 23 PVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred HHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECch
Confidence 46778999999999999 788899999999999999999999999999999999999 9999998864
No 11
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.84 E-value=2.8e-20 Score=95.83 Aligned_cols=67 Identities=10% Similarity=0.140 Sum_probs=62.6
Q ss_pred ccCCHHHHHHHhhccC--ce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLL--RL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g--~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+++++++|+++|++|| .| .++.++.+|+++|||||+|.+.++|.+|+..|||..++|+.|+|..+++
T Consensus 65 ~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 65 WWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp TTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCH
T ss_pred CCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCC
Confidence 4689999999999999 77 7888889999999999999999999999999999999999999998864
No 12
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=4.5e-20 Score=88.27 Aligned_cols=67 Identities=13% Similarity=0.241 Sum_probs=62.0
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.+|.++|||||+|.+.++|..|+..+||..++|+.|+|+++++
T Consensus 12 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 12 YDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 367899999999999999 6777778899999999999999999999999999999999999999875
No 13
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.83 E-value=5.4e-20 Score=87.69 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=61.9
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.+++++|||||+|.+.++|.+|+..||+..++|++|+|+.+++
T Consensus 25 ~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 25 FTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp TTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred CCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 368999999999999999 7778888999999999999999999999999999999999999998865
No 14
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=6.6e-20 Score=87.25 Aligned_cols=65 Identities=15% Similarity=0.268 Sum_probs=60.8
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
++++++|+++|++||.| .++.++.++.++|||||+|.+.++|.+|+..||+..+.|+.|+|++|+
T Consensus 27 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 27 SLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp TSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 67899999999999999 677777889999999999999999999999999999999999999885
No 15
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.83 E-value=8.9e-20 Score=85.99 Aligned_cols=66 Identities=20% Similarity=0.421 Sum_probs=61.3
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.+++++|||||+|.+.++|.+|+ .+||..+.|+.|+|+.+++
T Consensus 16 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 16 YGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp TTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 367999999999999999 67788889999999999999999999999 8999999999999999876
No 16
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.6e-20 Score=88.35 Aligned_cols=67 Identities=25% Similarity=0.317 Sum_probs=62.4
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++.++|||||+|.+.++|..|+..|||..+.|+.|+|.++++
T Consensus 25 ~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (103)
T 2cq0_A 25 EDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 94 (103)
T ss_dssp TTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCC
Confidence 368999999999999999 7777878999999999999999999999999999999999999999875
No 17
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=9.7e-20 Score=87.27 Aligned_cols=67 Identities=12% Similarity=0.139 Sum_probs=62.3
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.+++++|||||+|.+.++|++|+..+||..+.|+.|+|++++.
T Consensus 25 ~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (98)
T 2cqp_A 25 FTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSG 94 (98)
T ss_dssp TTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence 367899999999999999 6788889999999999999999999999999999999999999998864
No 18
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.83 E-value=1.6e-19 Score=88.63 Aligned_cols=67 Identities=21% Similarity=0.283 Sum_probs=62.2
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++.++|||||+|.+.++|+.|+..|||..+.|+.|+|.++++
T Consensus 25 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (115)
T 2dgo_A 25 PEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 94 (115)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 367999999999999999 6777778999999999999999999999999999999999999999875
No 19
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=9.1e-20 Score=89.59 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=62.5
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++.++|||||+|.+.++|.+|+..||+..+.|+.|+|+++++
T Consensus 35 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 104 (115)
T 2cpz_A 35 QEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 104 (115)
T ss_dssp SSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence 367999999999999999 7788888999999999999999999999999999999999999999875
No 20
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.5e-19 Score=86.94 Aligned_cols=66 Identities=17% Similarity=0.262 Sum_probs=60.9
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++ +++++|||||+|.+.++|..|+..|||..+.|+.|+|.++++
T Consensus 27 ~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 27 FSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp TTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred CCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 367999999999999999 666776 899999999999999999999999999999999999999876
No 21
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=6.6e-20 Score=87.38 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=62.1
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.+++++|||||+|.+.++|..|+..|||..+.|+.|+|+.+++
T Consensus 15 ~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 15 FNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTE 84 (95)
T ss_dssp TTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred CCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence 367999999999999999 6777778899999999999999999999999999999999999999875
No 22
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=7.2e-20 Score=87.85 Aligned_cols=67 Identities=25% Similarity=0.302 Sum_probs=61.7
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++.++|||||+|.+.++|..|+..|||..+.|+.|+|.++++
T Consensus 18 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 87 (99)
T 1whw_A 18 YTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTI 87 (99)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCC
T ss_pred CCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 368999999999999999 6667777899999999999999999999999999999999999999875
No 23
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.3e-20 Score=88.56 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=62.0
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++|+++|++||.| .++.++.+|.++|||||+|.+.++|..|+..|||..+.|+.|+|+++++
T Consensus 34 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 34 EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 102 (106)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred CCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence 67899999999999999 7778888999999999999999999999999999999999999998864
No 24
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=7.5e-20 Score=89.30 Aligned_cols=67 Identities=22% Similarity=0.308 Sum_probs=62.8
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.+|.++|||||.|.+.++|.+|+..+||..+.|+.|+|+.+++
T Consensus 36 ~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 105 (108)
T 2jrs_A 36 FNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTE 105 (108)
T ss_dssp SSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEccc
Confidence 368999999999999999 7788888999999999999999999999999999999999999999876
No 25
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.82 E-value=2.6e-19 Score=86.89 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=60.9
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++ ++.++|+|||+|.+.++|.+|+..|||..+.|+.|+|+++.+
T Consensus 39 ~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~s 107 (107)
T 3ulh_A 39 FGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTS 107 (107)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeCC
Confidence 367899999999999999 677776 899999999999999999999999999999999999999864
No 26
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.1e-20 Score=88.50 Aligned_cols=67 Identities=24% Similarity=0.318 Sum_probs=62.2
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++.++|||||+|.+.++|..|+..||+..+.|+.|+|.++++
T Consensus 22 ~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2cqb_A 22 EEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKP 91 (102)
T ss_dssp SSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCC
Confidence 367999999999999999 6777778899999999999999999999999999999999999999876
No 27
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=86.99 Aligned_cols=66 Identities=12% Similarity=0.323 Sum_probs=61.1
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++.++|||||+|.+.++|.+|+. +|+..+.|+.|+|.++++
T Consensus 20 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~ 88 (99)
T 2dgs_A 20 HNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEP 88 (99)
T ss_dssp SSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCC
Confidence 368999999999999999 677777889999999999999999999999 999999999999999875
No 28
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=2.7e-19 Score=88.07 Aligned_cols=65 Identities=20% Similarity=0.327 Sum_probs=58.4
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| +++.++ +.++|||||+|.+.++|++|+..|||..++|+.|+|..+++
T Consensus 15 ~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 15 KSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 368999999999999999 666664 45799999999999999999999999999999999998764
No 29
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=3.1e-19 Score=85.05 Aligned_cols=66 Identities=21% Similarity=0.200 Sum_probs=60.1
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++. ++++|||||+|.+.++|.+|+..||+..+.|+.|+|+++++
T Consensus 26 ~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 26 ARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 367899999999999999 6666654 89999999999999999999999999999999999999875
No 30
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=1.5e-19 Score=88.14 Aligned_cols=66 Identities=18% Similarity=0.181 Sum_probs=61.3
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++|+++|++||.| .++.++.+|.++|||||+|.+.++|..|+..|||..++|+.|+|.++++
T Consensus 37 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 105 (110)
T 1oo0_B 37 EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 105 (110)
T ss_dssp TCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence 67899999999999999 6667778899999999999999999999999999999999999998864
No 31
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=86.57 Aligned_cols=66 Identities=21% Similarity=0.181 Sum_probs=60.6
Q ss_pred ccCCHHHHHHHhhccCce-E----------EeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLRL-S----------LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~----------~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
.++++++|+++|++||.| . ++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|+.|+
T Consensus 23 ~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 23 ENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp SSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred CCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 368999999999999987 5 66777889999999999999999999999999999999999999875
No 32
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=87.75 Aligned_cols=67 Identities=21% Similarity=0.357 Sum_probs=62.6
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.+|.++|||||+|.+.++|..|+..+||..+.|+.|+|.++++
T Consensus 18 ~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 18 YEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp TTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred CcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 367999999999999999 7788888999999999999999999999999999999999999999875
No 33
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.9e-20 Score=88.33 Aligned_cols=67 Identities=22% Similarity=0.284 Sum_probs=61.9
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++.++|||||+|.+.++|.+|+..||+..+.|+.|+|.++++
T Consensus 25 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 25 EKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASA 94 (105)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 368999999999999999 6677777899999999999999999999999999999999999999875
No 34
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-19 Score=85.57 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=61.6
Q ss_pred ccCCHHHHHHHhhccCce----EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL----SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++.++|||||+|.+.++|..|+..|||..+.|+.|+|+++++
T Consensus 15 ~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (96)
T 1x5t_A 15 PEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 85 (96)
T ss_dssp TTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCC
T ss_pred CCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecc
Confidence 367999999999999998 4667778899999999999999999999999999999999999999875
No 35
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=1e-19 Score=89.71 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=60.5
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
.++++++|+++|++||.| .++.++.+++++|||||+|.+.++|..|+..|||..++|+.|+|++++
T Consensus 50 ~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 50 QEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp TTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 367999999999999999 677777889999999999999999999999999999999999999875
No 36
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=6.6e-20 Score=88.56 Aligned_cols=67 Identities=18% Similarity=0.296 Sum_probs=61.9
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++++
T Consensus 23 ~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dnm_A 23 YRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARY 92 (103)
T ss_dssp TTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCc
Confidence 368999999999999999 6677778899999999999999999999999999999999999999875
No 37
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.2e-19 Score=86.02 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=60.4
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCC---CCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSL---NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~---~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++. ++.++|||||+|.+.++|..|+..|||..+.|+.|.|+++++
T Consensus 15 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 87 (98)
T 2cpf_A 15 FSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISER 87 (98)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccC
Confidence 368999999999999999 6666655 568999999999999999999999999999999999998875
No 38
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=2.5e-19 Score=90.40 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=62.7
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|+.||.| .++.++.+++++|||||+|.+.++|.+|+..|||..+.|+.|+|.++++
T Consensus 52 ~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 121 (139)
T 1u6f_A 52 TTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAAS 121 (139)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 367999999999999999 7888888999999999999999999999999999999999999999875
No 39
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.81 E-value=4.8e-19 Score=87.90 Aligned_cols=66 Identities=23% Similarity=0.476 Sum_probs=61.4
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++.++|||||+|.+.++|..|+ .+||..++|+.|+|..+++
T Consensus 46 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 46 YGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 368999999999999999 77788889999999999999999999999 7999999999999999875
No 40
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.8e-20 Score=88.14 Aligned_cols=67 Identities=19% Similarity=0.381 Sum_probs=62.0
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++.++|||||+|.+.++|..|+..||+..+.|+.|+|.++++
T Consensus 22 ~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 91 (102)
T 1x5s_A 22 FDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 91 (102)
T ss_dssp TTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEEC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 368999999999999999 6777778899999999999999999999999999999999999999875
No 41
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=84.73 Aligned_cols=67 Identities=10% Similarity=0.254 Sum_probs=60.5
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCC-ceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRD-SHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~-~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++. ++|+|||+|.+.++|.+|+..|||..++|+.|+|+.+++
T Consensus 14 ~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 14 RNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 84 (88)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred CCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence 367999999999999999 6667766655 899999999999999999999999999999999999876
No 42
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.81 E-value=6.4e-19 Score=90.42 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=62.7
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++.++|||||+|.+.++|..|+..||+..+.|+.|+|.++++
T Consensus 49 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 49 FYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 368999999999999999 7788888999999999999999999999999999999999999999875
No 43
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=1.4e-19 Score=90.71 Aligned_cols=67 Identities=25% Similarity=0.346 Sum_probs=62.2
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++.++|||||+|.+.++|.+|+..|||..++|+.|+|+++++
T Consensus 56 ~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~ 125 (129)
T 2kxn_B 56 LYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT 125 (129)
T ss_dssp TSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 367999999999999999 7777888899999999999999999999999999999999999998875
No 44
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.7e-19 Score=87.26 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=62.1
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhC------CceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLD------ETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~------~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++.++|||||+|.+.++|..|+..+| +..++|+.|+|.++++
T Consensus 25 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~ 100 (111)
T 1x4h_A 25 FDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVT 100 (111)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCC
Confidence 368999999999999999 677788889999999999999999999999999 9999999999998865
No 45
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=5.9e-19 Score=85.24 Aligned_cols=65 Identities=17% Similarity=0.280 Sum_probs=60.3
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++|| | .++.++.+++++|||||+|.+.++|..|+ .||+..+.|+.|+|.++++
T Consensus 25 ~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dng_A 25 FNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEG 92 (103)
T ss_dssp TTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCC
T ss_pred CCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecC
Confidence 3689999999999998 6 78888889999999999999999999999 8999999999999999875
No 46
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=1.1e-18 Score=81.97 Aligned_cols=64 Identities=17% Similarity=0.336 Sum_probs=58.6
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
.++++++|+++|++||.| .++.++.+|+++|||||.|.+.++|.+|+. +++..++|+.|+|+.|
T Consensus 21 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 21 WDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp TTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 367999999999999999 778888899999999999999999999997 6889999999999875
No 47
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=4.4e-19 Score=83.72 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=54.3
Q ss_pred cCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 3 GKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
.+++++|+++|.+||+| .+... .++|||||+|.+.++|..|+..||+..+.|+.|+|+.|.
T Consensus 18 ~~te~~L~~lF~q~G~V~~~~l~----~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 18 QIDGPTLRTLCMQHGPLVSFHPY----LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp TCCCHHHHHHHHHHSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cCCHHHHHHHHHhhCCEEEEEEc----CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 67899999999999999 33332 268999999999999999999999999999999999875
No 48
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.2e-19 Score=86.54 Aligned_cols=67 Identities=25% Similarity=0.322 Sum_probs=60.8
Q ss_pred ccCCHHHHHHHhhccCce---EEeee-CCCCCceeEEEEEEcCHHHHHHHHHhh-CCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSK-SLNRDSHGFGFLSLDRDEDADAAIRTL-DETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~-~~~~~~~g~~fv~~~~~~~a~~ai~~l-~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.+ +.++.++|||||+|.+.++|.+|+..| |+..+.|+.|+|.++++
T Consensus 25 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~ 96 (107)
T 2cph_A 25 FQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS 96 (107)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCC
T ss_pred CcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCC
Confidence 367999999999999999 55555 568999999999999999999999999 99999999999999875
No 49
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.1e-19 Score=88.19 Aligned_cols=66 Identities=21% Similarity=0.224 Sum_probs=60.7
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++.++|||||+|.+.++|.+|+ .+||..+.|+.|+|.++++
T Consensus 35 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 35 ARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp TTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 367999999999999999 77778888999999999999999999999 8999999999999998763
No 50
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.80 E-value=3e-19 Score=88.08 Aligned_cols=66 Identities=20% Similarity=0.339 Sum_probs=60.5
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++ ++.++|||||+|.+.++|+.|+..|||..+.|+.|+|+++++
T Consensus 17 ~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 17 RETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp TTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 368999999999999999 666665 899999999999999999999999999999999999999875
No 51
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=2.6e-19 Score=91.88 Aligned_cols=67 Identities=18% Similarity=0.334 Sum_probs=62.1
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.+|.++|||||.|.+.++|..|+..|||..+.|+.|+|.++++
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 368999999999999999 6777777899999999999999999999999999999999999999875
No 52
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=8.2e-19 Score=84.52 Aligned_cols=67 Identities=21% Similarity=0.384 Sum_probs=62.0
Q ss_pred ccCCHHHHHHHhhccCceEEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|+.|+.+.++.++.++.++|||||+|.+.++|..|+..||+..+.|+.|+|+++++
T Consensus 25 ~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 25 EDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp TTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 3679999999999998777788888999999999999999999999999999999999999999875
No 53
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.80 E-value=9e-19 Score=87.01 Aligned_cols=66 Identities=18% Similarity=0.214 Sum_probs=60.8
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++ +|.++|||||+|.+.++|..|+..+||..++|+.|+|++|.+
T Consensus 45 ~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 113 (124)
T 2kt5_A 45 FGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 113 (124)
T ss_dssp SSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECC
T ss_pred CCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 367999999999999999 666766 899999999999999999999999999999999999999875
No 54
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.80 E-value=1.5e-18 Score=84.49 Aligned_cols=64 Identities=16% Similarity=0.156 Sum_probs=57.3
Q ss_pred CHHHHHHHhhccCce---EEeeeCCC-CCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 5 ASRDRESKTYQLLRL---SLLSKSLN-RDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 5 ~~~~l~~~f~~~g~i---~~~~~~~~-~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.+++|+++|++||.| .++.++.+ +.++|++||.|.+.++|.+|+..|||..+.|+.|.|.++++
T Consensus 26 ~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 26 LEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred HHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 578999999999999 56666543 68899999999999999999999999999999999998864
No 55
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=2.3e-19 Score=86.95 Aligned_cols=67 Identities=21% Similarity=0.224 Sum_probs=61.4
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCcee---CCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEW---NGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~---~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.+++++|||||.|.+.++|..|+..||+..+ .+++|+|.++++
T Consensus 23 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 95 (106)
T 2dgp_A 23 RNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADS 95 (106)
T ss_dssp TTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCC
T ss_pred CCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCc
Confidence 368999999999999999 6777778899999999999999999999999999988 899999999875
No 56
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.80 E-value=2.7e-19 Score=96.82 Aligned_cols=67 Identities=15% Similarity=0.221 Sum_probs=62.6
Q ss_pred ccCCHHHHHHHhhccC--ce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLL--RL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g--~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+++++++|+++|++|| .| .++.++.+++++|||||+|.+.++|.+||..||+..+.|+.|+|.++++
T Consensus 78 ~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 78 WWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp TTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCC
Confidence 4689999999999999 78 7888889999999999999999999999999999999999999998764
No 57
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=1.3e-19 Score=83.16 Aligned_cols=64 Identities=16% Similarity=0.343 Sum_probs=58.3
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
.++++++|+++|++||.| .++.++.++.++|||||+|.+.++|++|+. +|+..++|++|+|+.|
T Consensus 9 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 9 VNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp SSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 367999999999999999 666777789999999999999999999998 9999999999999865
No 58
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.79 E-value=5.3e-19 Score=88.45 Aligned_cols=66 Identities=11% Similarity=-0.053 Sum_probs=58.5
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcC----HHH----HHHHHH--hhCCceeCCeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDR----DED----ADAAIR--TLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~----~~~----a~~ai~--~l~~~~~~~~~i~v~~a~ 67 (69)
+++++++|+.+|++||.| .++.|+.||.++|||||.|.+ +++ |.+|+. .+||..++|+.|+|...+
T Consensus 16 ~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 16 TNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp CCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 578999999999999999 899999999999999999985 333 788888 789999999999999765
No 59
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.79 E-value=1e-18 Score=84.56 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=60.0
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCC---eEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNG---RIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~---~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++ ++.++|||||+|.+.++|..|+..|||..+.+ +.|+|.++++
T Consensus 25 ~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~ 96 (105)
T 2dnh_A 25 KQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADT 96 (105)
T ss_dssp TTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECcc
Confidence 367999999999999999 666665 79999999999999999999999999999998 9999999875
No 60
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.2e-19 Score=85.30 Aligned_cols=65 Identities=17% Similarity=0.251 Sum_probs=59.5
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCC-CCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLN-RDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~-~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++|| | .++.++.+ ++++|||||+|.+.++|.+|+ .+|+..+.|+.|+|.++++
T Consensus 25 ~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 93 (104)
T 1wi8_A 25 YDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQ 93 (104)
T ss_dssp SSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCC
T ss_pred CcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccC
Confidence 3689999999999999 7 67777776 899999999999999999999 8999999999999999875
No 61
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=8.9e-19 Score=84.57 Aligned_cols=65 Identities=15% Similarity=0.243 Sum_probs=59.3
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.+ ++.++|||||.|.+.++|..|+..||+..+.|+.|+|.++++
T Consensus 25 ~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 25 DGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp TTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 368999999999999999 45554 899999999999999999999999999999999999999875
No 62
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.5e-19 Score=84.76 Aligned_cols=67 Identities=7% Similarity=0.088 Sum_probs=61.8
Q ss_pred ccCCHHHHHHHhhccCce----EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeE----EEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL----SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRI----IHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~----i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++.++|||||+|.+.++|+.|+..|||..+.|+. |+|.+|++
T Consensus 19 ~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~ 93 (99)
T 2div_A 19 PYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATY 93 (99)
T ss_dssp TTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTC
T ss_pred CCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCC
Confidence 367999999999999976 67888889999999999999999999999999999999998 99998875
No 63
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.6e-19 Score=84.55 Aligned_cols=66 Identities=20% Similarity=0.289 Sum_probs=60.2
Q ss_pred ccCCHHHHHHHhhccCceEEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.|.++.+ .+++++|||||+|.+.++|++|+..||+..+.|+.|+|.++++
T Consensus 25 ~~~t~~~l~~~F~~~g~v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 25 YSATEETLQEVFEKATFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp TTCCHHHHHHHCSSCSEEECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCHHHHHHHHHhCCEEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 36899999999999999965555 6789999999999999999999999999999999999999875
No 64
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.7e-19 Score=85.25 Aligned_cols=66 Identities=15% Similarity=0.247 Sum_probs=61.0
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++.++|||||+|.+.++|.+|+.. |+..+.|+.|+|..+++
T Consensus 26 ~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~ 94 (105)
T 2dh8_A 26 WSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTP 94 (105)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccC
Confidence 367999999999999999 7778888999999999999999999999998 99999999999998865
No 65
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.7e-18 Score=84.09 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=59.9
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++ ++.++|||||+|.+.++|..|+..||+..+.|+.|+|+++++
T Consensus 25 ~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 25 YKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp TTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 367999999999999999 666665 699999999999999999999999999999999999998863
No 66
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.6e-19 Score=86.03 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=60.6
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.+++++|||||+|.+.++|++|+..+++ .+.|+.|+|+++++
T Consensus 27 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~ 95 (116)
T 2cqd_A 27 YHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYL 95 (116)
T ss_dssp SSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTT
T ss_pred CCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEccc
Confidence 368999999999999999 6777778899999999999999999999999998 89999999999854
No 67
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.79 E-value=8.1e-19 Score=83.15 Aligned_cols=67 Identities=21% Similarity=0.205 Sum_probs=58.8
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .+...+.++.++|||||+|.+.++|..|+..||+..+.|+.|+|+++++
T Consensus 18 ~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 18 FDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 367899999999999999 3222235889999999999999999999999999999999999999875
No 68
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.79 E-value=4.1e-19 Score=88.37 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=61.5
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++.++|||||+|.+.++|..|+..|||..+.|+.|.|+++++
T Consensus 32 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 101 (126)
T 3ex7_B 32 EEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 101 (126)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Confidence 367999999999999999 5667777999999999999999999999999999999999999998864
No 69
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1e-18 Score=85.53 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=58.5
Q ss_pred ccCCHHHHH---HHhhccCce---EEeeeCCCC---CceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRE---SKTYQLLRL---SLLSKSLNR---DSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~---~~f~~~g~i---~~~~~~~~~---~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|. ++|++||.| .++.++.++ .++|||||+|.+.++|++|+..|||..++|+.|+|.+|++
T Consensus 25 ~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~ 100 (111)
T 2cpi_A 25 QRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTT 100 (111)
T ss_dssp TTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCC
T ss_pred CCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccc
Confidence 367899999 999999999 566655533 5669999999999999999999999999999999998875
No 70
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=83.39 Aligned_cols=64 Identities=11% Similarity=0.085 Sum_probs=57.1
Q ss_pred ccCCHHHHH----HHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRE----SKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~----~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+ ++|++||.| .++.++.+ +|||||+|.+.++|.+|+..+||..++|++|+|+.+++
T Consensus 19 ~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~ 89 (96)
T 2dgx_A 19 YRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATG 89 (96)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 367899999 999999999 56555544 89999999999999999999999999999999999876
No 71
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=9.1e-20 Score=86.22 Aligned_cols=66 Identities=24% Similarity=0.454 Sum_probs=59.6
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.+|.++|||||+|.+.+ |..|+..+||..++|+.|+|+.|.+
T Consensus 11 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 11 YSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp TTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 367899999999999999 67778888999999999999999 9999999999999999999999875
No 72
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=2.1e-18 Score=89.26 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=62.1
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+.+|++||.| .++.++.+|.++|||||.|.+.++|..|+..|||..+.|+.|.|.++++
T Consensus 82 ~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 151 (165)
T 1rk8_A 82 EEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 151 (165)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred CCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 367999999999999999 6777888999999999999999999999999999999999999998864
No 73
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=9.1e-19 Score=88.20 Aligned_cols=65 Identities=23% Similarity=0.310 Sum_probs=59.4
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
.++++++|+++|++||.| .++.++.++.++|||||+|.+.++|.+|+..+||..+.|+.|+|++|
T Consensus 73 ~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 73 EEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 367899999999999999 66777788999999999999999999999999999999999999875
No 74
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.3e-19 Score=85.52 Aligned_cols=64 Identities=9% Similarity=0.017 Sum_probs=58.3
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
.++++++|+++|++||.| .++.++. |.++|||||+|.+.++|..|+. +++..+.|+.|.|..++
T Consensus 21 ~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 21 TDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp TTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 468999999999999999 6777766 9999999999999999999999 99999999999998764
No 75
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=85.38 Aligned_cols=66 Identities=18% Similarity=0.367 Sum_probs=61.0
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++.++|||||+|.+.++|..|+.. ++..++|+.|+|..+++
T Consensus 37 ~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 37 FETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp TCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 368999999999999999 7778888899999999999999999999997 99999999999998875
No 76
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.78 E-value=3.9e-18 Score=87.27 Aligned_cols=66 Identities=17% Similarity=0.335 Sum_probs=62.1
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++|+++|++||.| .++.++.+|.++|+|||.|.+.++|.+|+..|||..++|++|+|.+|++
T Consensus 98 ~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 98 NVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp TCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 67899999999999999 7777888999999999999999999999999999999999999999874
No 77
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=7.5e-19 Score=84.91 Aligned_cols=66 Identities=8% Similarity=0.088 Sum_probs=60.7
Q ss_pred ccCCHHHHHHHhhc-cCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCce-eCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQ-LLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETE-WNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~-~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~-~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++ ||.| .++.++ ++.++|||||+|.+.++|..|+..+|+.. +.|+.|+|.++++
T Consensus 19 ~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~ 89 (104)
T 2dhg_A 19 PDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIP 89 (104)
T ss_dssp TTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCC
T ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccC
Confidence 36799999999999 9999 677777 89999999999999999999999999999 9999999998864
No 78
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.2e-18 Score=81.87 Aligned_cols=64 Identities=13% Similarity=0.166 Sum_probs=57.0
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++|+++|++||.| .++.+ .+.++|||||+|.+.++|.+|+..||+..+.|+.|+|.++++
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 26 DVTEVLILQLFSQIGPCKSCKMITE--HTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp TCCHHHHHHHHHHHSCEEEEEEECC--CCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred cCCHHHHHHHHHhcCCEeEEEEEec--CCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 67999999999999999 45444 344689999999999999999999999999999999999875
No 79
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.4e-19 Score=88.20 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=60.7
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+++++++|+++|++||.| .++.+..+|+++|||||+|.+.++|..|+. +|+..++|+.|+|..+.+
T Consensus 35 ~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 35 FEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp TTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECH
T ss_pred CCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCH
Confidence 468999999999999998 567777899999999999999999999999 999999999999998763
No 80
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.9e-20 Score=85.85 Aligned_cols=67 Identities=15% Similarity=0.275 Sum_probs=60.9
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++.++|||||+|.+.++|..|+..|||..+.|+.++++.+++
T Consensus 15 ~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~s 84 (85)
T 1x4e_A 15 PGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPSS 84 (85)
T ss_dssp TTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCCC
Confidence 367899999999999999 6777888899999999999999999999999999999999998877654
No 81
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=4.4e-18 Score=80.56 Aligned_cols=64 Identities=17% Similarity=0.325 Sum_probs=58.7
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++| .| .++.+ .+|+++|+|||+|.+.++|..|+. +||..++|+.|+|..+++
T Consensus 20 ~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 20 FNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp SSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred CCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 468999999999999 67 66776 789999999999999999999999 999999999999999875
No 82
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.78 E-value=2.3e-18 Score=84.12 Aligned_cols=66 Identities=15% Similarity=0.239 Sum_probs=59.8
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.+|.++|||||+|.+.++|.+|+..+ +..++|+.|+|..+.+
T Consensus 35 ~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~ 103 (109)
T 2rs2_A 35 WQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFP 103 (109)
T ss_dssp TTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCC
T ss_pred CCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccC
Confidence 368999999999999999 67777788999999999999999999999976 5999999999998865
No 83
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.3e-19 Score=81.37 Aligned_cols=64 Identities=16% Similarity=0.257 Sum_probs=59.1
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
.++++++|+++|++||.+ .++.++.++.++|+|||.|.+.++|.+|+..++ ..++|+.|+|+.|
T Consensus 10 ~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 10 WQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp SSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 367899999999999999 777788889999999999999999999999999 9999999999876
No 84
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.9e-18 Score=81.03 Aligned_cols=65 Identities=28% Similarity=0.410 Sum_probs=57.5
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++ +.++|||||+|.+.++|..|+..||+..++|+.|+|.++++
T Consensus 25 ~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 25 FRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp TTCCHHHHHHHGGGTSCEEEEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 368999999999999999 454443 34899999999999999999999999999999999999875
No 85
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=2.1e-18 Score=85.27 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=58.7
Q ss_pred ccCCHHHHHHHhhccCc---e---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLR---L---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~---i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
+++++++|+++|++||. | .++.++. |+++|||||+|.+.++|.+|+. +|+..++|+.|+|..++
T Consensus 27 ~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 96 (118)
T 2db1_A 27 WSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSH 96 (118)
T ss_dssp TTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEEC
T ss_pred CCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECC
Confidence 46899999999999998 6 7777765 9999999999999999999999 99999999999999875
No 86
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-19 Score=90.99 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=61.2
Q ss_pred ccCCHHHHHHHhhccCce-----EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCc----eeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-----SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDET----EWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-----~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~----~~~~~~i~v~~a~~ 68 (69)
+++++++|+++|++||.| +++.++.+|+++|||||+|.+. +|.+|+..|||. .++|+.|+|+++++
T Consensus 33 ~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~ 107 (131)
T 2m2b_A 33 PHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKG 107 (131)
T ss_dssp TTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCC
T ss_pred CCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCC
Confidence 467999999999999988 5788888999999999999999 999999999999 99999999998875
No 87
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=2.9e-19 Score=86.05 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=58.9
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeC-CCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKS-LNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~-~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++|| | .++.++ .+|+++|||||+|.+.++|.+|+ .+||..++|+.|+|+.+++
T Consensus 29 ~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 29 YDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp SCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCC
T ss_pred CCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccC
Confidence 3678999999999999 8 666666 58999999999999999999999 8999999999999999875
No 88
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.7e-18 Score=81.08 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=59.3
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++.++|||||+|.+.++|..|+. +++.++|+.|.|.++++
T Consensus 25 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 25 WKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp SSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCT
T ss_pred CcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCC
Confidence 368999999999999999 777888889999999999999999999998 47899999999998865
No 89
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.2e-19 Score=84.91 Aligned_cols=65 Identities=15% Similarity=0.096 Sum_probs=59.1
Q ss_pred ccCCHHHHHHHhhccCce--EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL--SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+++++++|+++|++||.+ .++.++ +++++|||||+|.+.++|++|+. +|+..++++.|+|..+.+
T Consensus 25 ~~~te~~l~~~F~~~G~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 25 YRATENDIYNFFSPLNPMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNST 91 (102)
T ss_dssp TTCCHHHHHHSSCSCCCSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECC
T ss_pred CCCCHHHHHHHHHHcCceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCC
Confidence 478999999999999966 777886 89999999999999999999995 899999999999988764
No 90
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=1.3e-18 Score=87.95 Aligned_cols=65 Identities=18% Similarity=0.191 Sum_probs=59.6
Q ss_pred ccCCHHHHHHHhhccCc---e---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLR---L---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~---i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+++++++|+++|++||. | .++.++. |+++|||||+|.+.++|++|+. +|+..++|+.|+|..+.+
T Consensus 54 ~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 54 WSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHR 124 (136)
T ss_dssp TTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCH
T ss_pred CCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECCh
Confidence 47899999999999998 6 7778876 9999999999999999999999 999999999999998753
No 91
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-18 Score=83.83 Aligned_cols=64 Identities=28% Similarity=0.412 Sum_probs=57.6
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++|+++|++||.| .++.++ +.++|||||+|.+.++|.+|+..+||..++|+.|+|+.+++
T Consensus 40 ~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 40 RFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 67999999999999999 555553 45899999999999999999999999999999999999876
No 92
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=84.12 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=59.4
Q ss_pred ccCCHHHHHHHhhccCc-e---EEe-eeCCCCCceeEEEEEEcCHHHHHHHHHhhC--CceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLR-L---SLL-SKSLNRDSHGFGFLSLDRDEDADAAIRTLD--ETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~-i---~~~-~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~--~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||. | .++ .++.++.++|||||+|.+.++|..|+..|| +..+.|+.|+|.++++
T Consensus 18 ~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~ 91 (109)
T 2dis_A 18 KMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEP 91 (109)
T ss_dssp TTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCS
T ss_pred CcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCC
Confidence 36899999999999998 8 444 566778999999999999999999999996 5899999999999875
No 93
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=83.68 Aligned_cols=64 Identities=11% Similarity=0.110 Sum_probs=56.9
Q ss_pred CHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCe-EEEEEeecC
Q 045845 5 ASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGR-IIHVEKSKS 68 (69)
Q Consensus 5 ~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~-~i~v~~a~~ 68 (69)
++++|+++|++||.| .+...+.+|.++|||||+|.+.++|..|+..|||..+.|+ .|+|..++.
T Consensus 34 t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 34 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTD 99 (105)
T ss_dssp HHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCC
T ss_pred HHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcch
Confidence 578999999999999 3333367899999999999999999999999999999998 999998864
No 94
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.1e-18 Score=83.84 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=60.4
Q ss_pred ccCCHHHHHHHhhccCce-----------EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-----------SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-----------~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.+++++|||||+|.+.++|.+|+..|||..+.|+.|+|.++++
T Consensus 25 ~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (113)
T 2cpe_A 25 DSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARK 102 (113)
T ss_dssp TTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSC
T ss_pred CCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCC
Confidence 368999999999999976 3556667899999999999999999999999999999999999998875
No 95
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.6e-18 Score=83.30 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=59.8
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCcee--------CCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEW--------NGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~--------~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++ ++.++|||||.|.+.++|..|+..|||..+ .+++|.|.+++|
T Consensus 35 ~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 35 LSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGP 111 (114)
T ss_dssp TTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCC
Confidence 367999999999999999 677776 899999999999999999999999999999 577899999876
No 96
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-17 Score=81.37 Aligned_cols=66 Identities=21% Similarity=0.315 Sum_probs=58.0
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .+.. ..++.++|||||+|.+.++|..|+..||+..++|+.|+|+++++
T Consensus 32 ~~~t~~~l~~~F~~~G~v~~~~i-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 32 PDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEE-CCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEE-EECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 367999999999999999 3333 34567899999999999999999999999999999999999875
No 97
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=5.3e-19 Score=89.18 Aligned_cols=66 Identities=18% Similarity=0.343 Sum_probs=61.1
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++|+++|++||.| .++.++.++.++|||||+|.+.++|++|+..|||..+.|+.|+|+++++
T Consensus 58 ~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 58 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp SCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 57899999999999999 6666777899999999999999999999999999999999999999875
No 98
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-19 Score=87.09 Aligned_cols=66 Identities=20% Similarity=0.289 Sum_probs=60.6
Q ss_pred ccCCHHHHHHHhhccCce--EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL--SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.+ .++.++.++.++|||||+|.+.++|.+|+. +||..+.|+.|+|..+++
T Consensus 27 ~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 27 PNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp TTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred CCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCC
Confidence 368999999999999999 577777789999999999999999999999 999999999999998875
No 99
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=3.2e-18 Score=81.68 Aligned_cols=64 Identities=14% Similarity=0.277 Sum_probs=58.4
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .+ +.++.++|||||+|.+.++|..|+..+||..+.|+.|+|.++++
T Consensus 26 ~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 26 FNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp SSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 367999999999999999 44 45788999999999999999999999999999999999999865
No 100
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.76 E-value=1.3e-17 Score=85.97 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=60.7
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
++++++|+++|++||.| .++.++.+|.++|+|||.|.+.++|.+|+..|||..++|++|.|++|.
T Consensus 105 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 105 YLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 67899999999999999 677777899999999999999999999999999999999999999873
No 101
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=80.96 Aligned_cols=59 Identities=12% Similarity=0.139 Sum_probs=52.7
Q ss_pred CHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCe-EEEE
Q 045845 5 ASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGR-IIHV 63 (69)
Q Consensus 5 ~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~-~i~v 63 (69)
++++|+++|++||.| .+...+.+|+++|||||+|.+.++|..|+..|||..++|+ +|+|
T Consensus 20 t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 20 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 568999999999999 4434467899999999999999999999999999999999 8876
No 102
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.75 E-value=1.2e-17 Score=88.58 Aligned_cols=66 Identities=15% Similarity=0.352 Sum_probs=62.0
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++|+++|++||.| .++.++.+|.++|+|||.|.+.++|.+|+..|||..++|+.|.|.++++
T Consensus 136 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 136 DLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp TCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred cCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence 67899999999999999 7778888999999999999999999999999999999999999998875
No 103
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.6e-18 Score=83.53 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=59.1
Q ss_pred ccCCHHHHHHHhhccCce----EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL----SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+++++++|+++|++||.+ .++.++ +|+++|||||+|.+.++|.+|+.. |+..+.|+.|.|..+.+
T Consensus 25 ~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~ 93 (114)
T 2cpy_A 25 FSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTL 93 (114)
T ss_dssp TTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECH
T ss_pred CcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCH
Confidence 468999999999999977 677777 899999999999999999999996 99999999999998763
No 104
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=8.3e-18 Score=84.18 Aligned_cols=65 Identities=12% Similarity=0.236 Sum_probs=56.4
Q ss_pred cCCHHHHH----HHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRE----SKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~----~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++|+ ++|++||.| .+.. ..+++++|||||+|.+.++|..|+..|||..+.|++|+|.+|++
T Consensus 40 ~~~e~~L~~~L~~~F~~~G~I~~v~i-~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~ 109 (127)
T 2a3j_A 40 EVPKEKLQALLYALASSQGDILDIVV-DLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSET 109 (127)
T ss_dssp TSCHHHHHHHHHHHHHHHSCEEEEEE-CCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCC
T ss_pred CCCHHHHHHHHHHHhccCCCeEEEEe-ccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccC
Confidence 46777765 799999999 5443 34788999999999999999999999999999999999999875
No 105
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.75 E-value=3e-18 Score=86.83 Aligned_cols=67 Identities=15% Similarity=0.152 Sum_probs=59.0
Q ss_pred ccCCHHHHHHHhhccCce-EE-------eeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SL-------LSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~-------~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .+ +....++.++|||||.|.+.++|..|+..|||..+.|+.|.|.+|++
T Consensus 55 ~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 129 (143)
T 3egn_A 55 KHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 129 (143)
T ss_dssp TTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCC
T ss_pred CCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 368999999999999987 32 33345789999999999999999999999999999999999999875
No 106
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.9e-17 Score=79.25 Aligned_cols=62 Identities=15% Similarity=0.187 Sum_probs=55.5
Q ss_pred cCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++|+++|++||.| .+... .++|||||+|.+.++|.+|+..|||..+.|+.|+|.++++
T Consensus 24 ~~t~~~l~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 24 DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp SCCHHHHHHHHTTTSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCHHHHHHHHhhCCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 68999999999999999 44332 4678999999999999999999999999999999999875
No 107
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9.4e-18 Score=82.11 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=56.5
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
+++++++|+++|++| .| .++.++. |+++|||||+|.+.++|++|+ .+|+..++|+.|.|..+.
T Consensus 26 ~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 26 FSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp SSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 578999999999999 55 6777764 999999999999999999999 599999999999998775
No 108
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.75 E-value=3.2e-17 Score=83.91 Aligned_cols=67 Identities=21% Similarity=0.312 Sum_probs=62.0
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.+|.++|+|||+|.+.++|..|+..+||..+.|+.|+|..+++
T Consensus 12 ~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 12 QNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 367999999999999999 6777877999999999999999999999999999999999999998865
No 109
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.75 E-value=9.5e-19 Score=80.23 Aligned_cols=64 Identities=8% Similarity=0.072 Sum_probs=57.7
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
.++++++|+++|++||.+ .++.++.++.++|||||+|.+.++|.+|+. .++..+.|++|.|+.|
T Consensus 9 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 9 PDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp SSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 367999999999999999 566777889999999999999999999999 5999999999999875
No 110
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.74 E-value=2.1e-17 Score=86.72 Aligned_cols=66 Identities=17% Similarity=0.158 Sum_probs=61.8
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++|+++|++||.| .++.++.+|.++|+|||.|.+.++|.+|+..|||..++|+.|+|.++++
T Consensus 125 ~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 125 YLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp TCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 67899999999999999 6777777999999999999999999999999999999999999999875
No 111
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8e-18 Score=81.51 Aligned_cols=65 Identities=20% Similarity=0.219 Sum_probs=57.8
Q ss_pred ccCCHHHHHHHhhccCce----EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL----SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+++++++|+++|++||.| .++.+ .+|+++|||||+|.+.++|..|+.. |+..++|+.|+|..+.+
T Consensus 25 ~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~ 93 (104)
T 1wg5_A 25 FGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSR 93 (104)
T ss_dssp TTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECT
T ss_pred CCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCH
Confidence 468999999999999988 34455 7899999999999999999999997 99999999999988764
No 112
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=2.2e-17 Score=81.05 Aligned_cols=65 Identities=23% Similarity=0.278 Sum_probs=55.8
Q ss_pred ccCCHHHHHHHhhccC-ce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLL-RL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g-~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+++++++|+++|++|| .| .+... .+.++|||||+|.+.++|+.|+..|||..++|+.|+|+.+++
T Consensus 38 ~~~te~dL~~~F~~~G~~v~~v~i~--~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 38 EGCSWQDLKDLARENSLETTFSSVN--TRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCCHHHHHHHHHHHTCCCSEEECS--SCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCHHHHHHHHHHhCCeeEEEEEE--cCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4689999999999999 78 33221 235789999999999999999999999999999999998863
No 113
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.74 E-value=1.9e-17 Score=96.16 Aligned_cols=67 Identities=12% Similarity=0.266 Sum_probs=62.5
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|..+|++||.| .++.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.++++
T Consensus 112 ~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 112 YDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred CCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 368999999999999999 6778888999999999999999999999999999999999999999875
No 114
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.73 E-value=1.6e-17 Score=80.80 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=54.5
Q ss_pred HHHHHHHhhccCce---EEeeeCCC--CCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 6 SRDRESKTYQLLRL---SLLSKSLN--RDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 6 ~~~l~~~f~~~g~i---~~~~~~~~--~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+++|++.|++||.| .++.++.+ +.++|++||.|.+.++|.+|+..|||..+.|++|.|.++.+
T Consensus 29 ~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 29 VEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 47899999999999 55555443 36789999999999999999999999999999999998753
No 115
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.73 E-value=3e-17 Score=79.21 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=54.3
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCce--eCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETE--WNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~--~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .+..-+ .+|+|||+|.+.++|.+|+..+++.. +.|++|.|++|++
T Consensus 31 ~~~te~~L~~lF~~fG~V~~v~i~~----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 31 DGVVEADLVEALQEFGPISYVVVMP----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred CCCCHHHHHHHHhccCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 468999999999999999 333322 46899999999999999999999876 7899999999986
No 116
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.73 E-value=6.4e-17 Score=86.32 Aligned_cols=67 Identities=15% Similarity=0.203 Sum_probs=62.1
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.+++++|||||.|.+.++|..|+..+|+..+.|+.|++..+.+
T Consensus 25 ~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 25 PDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 468999999999999999 7888889999999999999999999999999999999999999987653
No 117
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.73 E-value=3.3e-17 Score=84.07 Aligned_cols=67 Identities=13% Similarity=0.227 Sum_probs=61.8
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.+|.++|+|||.|.+.++|..|+..++|..+.|+.|.|..+++
T Consensus 13 ~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 13 QDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 367999999999999999 6677778899999999999999999999999999999999999998875
No 118
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.73 E-value=4e-17 Score=79.27 Aligned_cols=59 Identities=24% Similarity=0.343 Sum_probs=50.4
Q ss_pred HHHHHHh-hccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 7 RDRESKT-YQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 7 ~~l~~~f-~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
++|++.| ++||.| .++.+ .+++++|||||.|.+.++|.+|+..|||..++|+.|+|.++
T Consensus 41 edl~~~f~~~~G~V~~v~i~~~-~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMNVCDN-LGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHTCCEEEEEECCS-SSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHhhccCCceEEEEEEeC-CCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 4555566 999999 45444 35789999999999999999999999999999999999875
No 119
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.73 E-value=1.6e-17 Score=87.03 Aligned_cols=66 Identities=18% Similarity=0.214 Sum_probs=60.4
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++ ++.++|||||+|.+.++|..|+..+||..+.|+.|+|.+|.+
T Consensus 98 ~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 98 FGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp SCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 368999999999999999 666666 899999999999999999999999999999999999998865
No 120
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.73 E-value=1.1e-17 Score=85.92 Aligned_cols=66 Identities=18% Similarity=0.294 Sum_probs=60.6
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.+|.++|+|||.|.+.++|.+|+. +++..+.|++|+|.+|+|
T Consensus 97 ~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 97 PDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp TTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 367899999999999999 666777789999999999999999999998 899999999999999986
No 121
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.5e-18 Score=83.81 Aligned_cols=67 Identities=18% Similarity=0.199 Sum_probs=58.4
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .+..+..++.++|||||+|.+.++|..|+..|||..+.|+.|+|.++++
T Consensus 35 ~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 104 (115)
T 2cpx_A 35 PRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKN 104 (115)
T ss_dssp TTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCC
T ss_pred CCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccC
Confidence 368999999999999987 2223333789999999999999999999999999999999999999875
No 122
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.73 E-value=9.6e-17 Score=80.55 Aligned_cols=64 Identities=13% Similarity=0.089 Sum_probs=54.6
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeE-EEEEEcCHHHHHHHHHhhCCceeCC--eEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGF-GFLSLDRDEDADAAIRTLDETEWNG--RIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~-~fv~~~~~~~a~~ai~~l~~~~~~~--~~i~v~~a~~ 68 (69)
+.+++++|+++|++||.| .+...+ +.+|+ |||+|.+.++|..|+..|||..+.| +.|+|++|++
T Consensus 38 ~~vte~~L~~lFs~yG~V~~V~i~~---~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 38 YPVTLDVLHQIFSKFGTVLKIITFT---KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp SCCCHHHHHHHHTTSSCEEEEEEEE---ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred CCCCHHHHHHHHhCcCCEEEEEEEc---CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 478999999999999999 332221 13577 9999999999999999999999998 8999999986
No 123
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=79.06 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=56.7
Q ss_pred ccCCHHHHHHHhhccCce--EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL--SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.+ .++|||||+|.+.++|..|+..|||..++|+.|+|.++++
T Consensus 29 ~~~t~~~l~~~F~~~G~v~~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 29 RDARVSDLKRALRELGSVPLRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp TTCCHHHHHHHHHHTTCCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CcCcHHHHHHHHHhcCCEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 368999999999999999 55543 5789999999999999999999999999999999999875
No 124
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-18 Score=83.51 Aligned_cols=65 Identities=11% Similarity=0.065 Sum_probs=58.5
Q ss_pred ccCCHHHHHHHhhccCc---e---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLR---L---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~---i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+++++++|+++|+.||. | .++.++. |+++|||||+|.+.++|..|+. +|+..++|+.|+|..+++
T Consensus 21 ~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 21 WSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp SSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCH
T ss_pred CCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCH
Confidence 46899999999999988 6 6777766 9999999999999999999999 999999999999988753
No 125
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=5.3e-17 Score=86.66 Aligned_cols=65 Identities=20% Similarity=0.327 Sum_probs=58.4
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++ +.++|||||.|.+.++|.+|+..|||..++|++|.|.+|++
T Consensus 113 ~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 113 KSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 368999999999999999 666663 45799999999999999999999999999999999998865
No 126
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=80.84 Aligned_cols=63 Identities=16% Similarity=0.226 Sum_probs=53.0
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCC--ceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDE--TEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~--~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .+..-+ .+|||||+|.+.++|..|+..+++ ..+.|++|+|.+|++
T Consensus 26 ~~vte~dL~~lF~~fG~V~~v~i~~----~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 26 IDVTEGEVISLGLPFGKVTNLLMLK----GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp TTSCHHHHHHHHHHHCCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 468999999999999999 322222 169999999999999999998864 789999999998875
No 127
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.72 E-value=5.3e-17 Score=80.40 Aligned_cols=63 Identities=11% Similarity=0.125 Sum_probs=55.5
Q ss_pred HHHHHHHhhccCce---EEeeeCC----CCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 6 SRDRESKTYQLLRL---SLLSKSL----NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 6 ~~~l~~~f~~~g~i---~~~~~~~----~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+++|++.|++||.| .++.++. ++.++|++||.|.+.++|.+|+..|||..+.|+.|.|.++.+
T Consensus 39 eedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 39 EGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp HHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 47899999999999 5666643 457789999999999999999999999999999999998753
No 128
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.72 E-value=2.3e-17 Score=78.76 Aligned_cols=65 Identities=12% Similarity=0.211 Sum_probs=57.1
Q ss_pred cCCHHHHH----HHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRE----SKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~----~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++|+ ++|++||.| .+.. ..++.++|||||+|.+.++|..|+..|||..+.|+.|+|+++++
T Consensus 19 ~~~~~~l~~~l~~~f~~~G~i~~v~i-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (97)
T 1nu4_A 19 KIKKDELKKSLHAIFSRFGQILDILV-SRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKT 88 (97)
T ss_dssp TSCHHHHHHHHHHHHGGGSCEEEEEC-CHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSS
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEE-EcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccC
Confidence 57889999 999999999 4322 24677889999999999999999999999999999999999875
No 129
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=5.1e-17 Score=77.34 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=57.0
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++. ||||+|.+.++|..|+. +||..++|+.|+|+.+.+
T Consensus 18 ~~~t~~~l~~~F~~~G~v~~v~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 18 RGVDSAQLSEYFLAFGPVASVVMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TTCCHHHHHHHGGGTSCEEEEEECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 368999999999999999 7788877766 99999999999999999 999999999999987753
No 130
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.72 E-value=3.1e-17 Score=79.01 Aligned_cols=63 Identities=14% Similarity=0.309 Sum_probs=57.1
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
.++++++|+++|++||.| .++.++ +|.++|||||+|.+.++|..|+. ++..++|+.|.|..+.
T Consensus 19 ~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 19 VRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 367999999999999999 677777 89999999999999999999999 9999999999988764
No 131
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=1.6e-16 Score=76.14 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=54.2
Q ss_pred cCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++|+++|++||.| .+.. ++|||||+|.+.++|..|+..+||..++|+.|+|+++++
T Consensus 34 ~~t~~~L~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 34 NVSKEDLFRIFSPYGHIMQINI------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp CCCHHHHHHHHGGGSCEEEEEE------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred cCCHHHHHHHHHhcCCEEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 68999999999999999 4333 268999999999999999999999999999999999875
No 132
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=6.1e-17 Score=83.91 Aligned_cols=65 Identities=11% Similarity=0.040 Sum_probs=55.2
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCC--eEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNG--RIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~--~~i~v~~a~~ 68 (69)
+++++++|+++|++||.| .+.... +.++|||||+|.+.++|..|+..|||..+.| +.|+|+++++
T Consensus 56 ~~vted~L~~~Fs~fG~V~~V~i~~--k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 56 YPVTLDVLHQIFSKFGTVLKIITFT--KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp SCCCHHHHHHHHHHHSCEEEEEEEE--SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEe--CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 468999999999999999 333221 2357999999999999999999999999965 9999999986
No 133
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=1.3e-16 Score=83.58 Aligned_cols=66 Identities=17% Similarity=0.243 Sum_probs=59.9
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.+|.++|||||.|.+.++|.+|+.. ++..++|+.|.|.++.+
T Consensus 114 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 114 EDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALS 182 (196)
T ss_dssp TTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCC
Confidence 368899999999999999 6778888999999999999999999999985 89999999999998875
No 134
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=9.8e-17 Score=78.08 Aligned_cols=62 Identities=21% Similarity=0.208 Sum_probs=53.7
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCC-----eEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNG-----RIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~-----~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .+..... |||||+|.+.++|+.|+..||+..+.| +.|+|..+++
T Consensus 25 ~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 25 PSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp SSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred CCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence 468999999999999999 3322221 899999999999999999999999999 9999999875
No 135
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=1.1e-16 Score=82.15 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=59.1
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCC--eEEEEEee
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNG--RIIHVEKS 66 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~--~~i~v~~a 66 (69)
++++++|+++|++||.| .++.++.++.++|+|||+|.+.++|.+|+..|||..+.| ++|+|++|
T Consensus 100 ~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 100 TITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 57899999999999999 677777789999999999999999999999999999988 99999875
No 136
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.71 E-value=4.9e-17 Score=79.72 Aligned_cols=66 Identities=11% Similarity=0.052 Sum_probs=56.6
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .+... .++.++|||||.|.+.++|..|+..|||..++|+.|.|.++++
T Consensus 18 ~~~t~~~l~~~F~~~G~v~~v~i~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 18 YKITAEEMYDIFGKYGPIRQIRVG-NTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEEEE-CSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEe-eCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 367999999999999999 32222 2456689999999999999999999999999999999998864
No 137
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=7.4e-17 Score=78.96 Aligned_cols=63 Identities=13% Similarity=0.100 Sum_probs=55.2
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .+... .++|||||+|.+.++|..|+..|||..+.|+.|.|.+++.
T Consensus 20 ~~~te~~L~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 20 AGTLAAEIQETFSRFGSLGRVLLP----EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEECC----SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEe----CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 367999999999999999 44333 2578999999999999999999999999999999998864
No 138
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-16 Score=76.41 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=54.9
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeC--CeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWN--GRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~--~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .+...+ + +|||||+|.+.++|+.|+..||+..+. |+.|+|+++++
T Consensus 27 ~~~t~~~l~~~F~~~G~v~~v~~~~--~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 27 PNTSLAALAREFDRFGSIRTIDHVK--G--DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp SSCCHHHHHHHHHTTSCEEEEEECS--S--SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCHHHHHHHHHhcCCeeEEEEeC--C--CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 367999999999999999 443332 1 689999999999999999999999999 99999999876
No 139
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.71 E-value=1.1e-16 Score=82.80 Aligned_cols=65 Identities=15% Similarity=0.303 Sum_probs=59.3
Q ss_pred ccCCHHHHHHHhhccCceEEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.|..+ ..++.++|+|||+|.+.++|.+|+..|||..++|+.|+|++|+|
T Consensus 109 ~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 109 FNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp SSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred CCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 367899999999999999433 67889999999999999999999999999999999999999876
No 140
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=8.5e-19 Score=86.25 Aligned_cols=66 Identities=21% Similarity=0.193 Sum_probs=59.9
Q ss_pred cCCHHHHHHHhhccCce-E----------EeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL-S----------LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-~----------~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++|+++|++||.| . ++.++.++.++|||||+|.+.++|..|+..|||..+.|+.|+|+++++
T Consensus 18 ~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (116)
T 2lcw_A 18 NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 94 (116)
Confidence 57899999999999988 5 556667899999999999999999999999999999999999998865
No 141
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.7e-16 Score=77.26 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=54.5
Q ss_pred cCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++|+++|++||.| .+...+. +|||||+|.+.++|..|+..|||..+.|+.|+|.++++
T Consensus 36 ~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 36 GLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp CCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 67999999999999999 3333322 68999999999999999999999999999999999875
No 142
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=4.7e-17 Score=78.24 Aligned_cols=63 Identities=17% Similarity=0.154 Sum_probs=55.3
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .+... .++|||||.|.+.++|..|+..|||..++|+.|+|.++++
T Consensus 37 ~~~~~~~l~~~f~~~G~i~~~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 37 HFATEADLIPLFQNFGFILDFKHY----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp TTCCHHHHHHHHHTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred cccCHHHHHHHHHhCCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 367999999999999999 33222 3579999999999999999999999999999999999876
No 143
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2e-16 Score=77.46 Aligned_cols=60 Identities=25% Similarity=0.331 Sum_probs=52.9
Q ss_pred HHHHHHHhhccCce-EE-eeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 6 SRDRESKTYQLLRL-SL-LSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 6 ~~~l~~~f~~~g~i-~~-~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+++|+++|++||.| .+ +.++ .++|||||.|.+.++|.+|+..|||..+.|+.|+|.++++
T Consensus 40 e~~l~~~f~~~G~v~~v~i~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 40 REDLRVECSKFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDG 101 (112)
T ss_dssp HHHHHHHGGGTSCCSEEEEETT---CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCS
T ss_pred HHHHHHHHHccCCEeEEEEecC---CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 47999999999999 33 3333 3789999999999999999999999999999999999875
No 144
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.5e-16 Score=76.11 Aligned_cols=63 Identities=13% Similarity=0.080 Sum_probs=53.4
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhh--CCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTL--DETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l--~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .+...+. +|||||+|.+.++|..|+..+ ++..+.|++|.|.++++
T Consensus 25 ~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 25 GEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp TTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 368999999999999999 4333322 799999999999999999977 46789999999999875
No 145
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-16 Score=78.45 Aligned_cols=63 Identities=14% Similarity=0.108 Sum_probs=54.2
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCcee-----CCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEW-----NGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~-----~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .+...+ .+|||||+|.+.++|++|+..|||..+ .+++|.|.+++.
T Consensus 37 ~~~te~~L~~~F~~fG~v~~v~i~~----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~ 105 (114)
T 2cq2_A 37 NGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEK 105 (114)
T ss_dssp GTCCHHHHHHHHHHHSCEEEEECCT----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEeccc
Confidence 368999999999999999 444332 379999999999999999999999998 688899998864
No 146
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.70 E-value=9.1e-17 Score=79.75 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=55.5
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+++++++|+++|++||.| .+... .++|||||.|.+.++|..|+..|||..+.|+.|+|.++++
T Consensus 47 l~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 47 EDMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp SSCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 368999999999999999 33222 4679999999999999999999999999999999999875
No 147
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2e-16 Score=74.70 Aligned_cols=61 Identities=25% Similarity=0.306 Sum_probs=53.9
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .+... +|||||+|.+.++|..|+..+|+..++|+.|+|+++++
T Consensus 18 ~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 18 REATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 368999999999999999 33332 58999999999999999999999999999999998875
No 148
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=4.8e-17 Score=81.05 Aligned_cols=64 Identities=16% Similarity=0.117 Sum_probs=57.0
Q ss_pred ccCCHHHHHHHhhccCc----e---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLR----L---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~----i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
+++++++|+++|++||. + .++.+ .+|+++|||||+|.+.++|.+|+.. |+..+.++.|+|..+.
T Consensus 33 ~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~ 103 (123)
T 2dha_A 33 FTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRST 103 (123)
T ss_dssp TTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEEC
T ss_pred CCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECC
Confidence 57899999999999985 3 67776 5899999999999999999999995 9999999999998775
No 149
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=2.8e-17 Score=79.02 Aligned_cols=64 Identities=25% Similarity=0.323 Sum_probs=55.4
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .+..... ++|||||+|.+.++|..|+..|||..++|+.|+|+.+++
T Consensus 10 ~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 10 TGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp SSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 368999999999999999 3322222 789999999999999999999999999999999999875
No 150
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=2.7e-16 Score=80.47 Aligned_cols=64 Identities=25% Similarity=0.374 Sum_probs=58.0
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeE--EEEEee
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRI--IHVEKS 66 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~--i~v~~a 66 (69)
++++++|+++|++||.+ .++.++.+|.++|+|||+|.+.++|.+|+..|||..+.|+. |+|.+|
T Consensus 99 ~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 99 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred cCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 57899999999999999 67777778999999999999999999999999999999975 777765
No 151
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.8e-16 Score=73.38 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=53.2
Q ss_pred cCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhh-CCceeCCeEEEEEeec
Q 045845 3 GKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTL-DETEWNGRIIHVEKSK 67 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l-~~~~~~~~~i~v~~a~ 67 (69)
++++++|+++|++||.| .+...+ ++|+|||+|.+.++|..|+..| ++..+.|++|+|++|+
T Consensus 23 ~~t~~~l~~~f~~~G~i~~~~~~~----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 23 TITETDLRNHFYQFGEIRTITVVQ----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp TSCHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCHHHHHHHHHhCCCEeEEEEEC----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 67899999999999999 332222 3689999999999999999998 9999999999999875
No 152
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.69 E-value=1.7e-16 Score=77.37 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=54.1
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .+... +|||||+|.+.++|..|+..|||..++|+.|+|.++++
T Consensus 41 ~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 41 LDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp TTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 367999999999999999 33222 68999999999999999999999999999999999875
No 153
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=2.9e-16 Score=78.34 Aligned_cols=62 Identities=10% Similarity=0.106 Sum_probs=53.2
Q ss_pred ccCCHHHHHHHhhccCce-EE-eeeCCCCCceeE-EEEEEcCHHHHHHHHHhhCCceeCC--eEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SL-LSKSLNRDSHGF-GFLSLDRDEDADAAIRTLDETEWNG--RIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~-~~~~~~~~~~g~-~fv~~~~~~~a~~ai~~l~~~~~~~--~~i~v~~a~~ 68 (69)
+.+++++|+.+|++||.| .+ +..+ .|| |||+|.+.++|..|+..|||..+.| +.|+|.+|++
T Consensus 35 ~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 35 YPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp SCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 478999999999999999 32 2332 286 9999999999999999999999987 6899999886
No 154
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.69 E-value=6e-18 Score=85.83 Aligned_cols=65 Identities=15% Similarity=0.059 Sum_probs=57.9
Q ss_pred ccCCHHHHHHHhhccCce--EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL--SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+++++++|+++|++||.+ .++.++. ++++|||||+|.+.++|++|+ .+|+..+.++.|+|..+.+
T Consensus 56 ~~~te~dL~~~F~~~Gi~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 56 YKATENDIYNFFSPLNPVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNST 122 (139)
T ss_dssp TTCCHHHHHHHHCSCCCSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCC
Confidence 578999999999999954 6777765 999999999999999999999 6999999999999987764
No 155
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.69 E-value=5.4e-16 Score=81.23 Aligned_cols=66 Identities=23% Similarity=0.378 Sum_probs=60.0
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.+|.++|||||.|.+.++|..|+.. ++..+.|+.|.|..+.+
T Consensus 23 ~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~ 91 (196)
T 1l3k_A 23 FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVS 91 (196)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC
T ss_pred CCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccC
Confidence 368999999999999999 7788888999999999999999999999985 99999999999988753
No 156
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.69 E-value=7.1e-17 Score=82.31 Aligned_cols=64 Identities=25% Similarity=0.269 Sum_probs=55.5
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .+...+. ++|||||.|.+.++|..|+..|||..+.|++|+|+++++
T Consensus 83 ~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 83 NNGNKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp SCCSCHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CCCCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 367899999999999999 3322221 589999999999999999999999999999999999876
No 157
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-16 Score=76.10 Aligned_cols=62 Identities=18% Similarity=0.261 Sum_probs=54.6
Q ss_pred cCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++|+++|++||.| .+...+ .+|||||+|.+.++|.+|+..|||..+.|+.|+|.++++
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~~~~----~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 26 DITEEEMRKLFEKYGKAGEVFIHK----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp TCCHHHHHHHTSTTCCCSEEEEET----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCCHHHHHHHHhhcCCeEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 67999999999999999 433332 368999999999999999999999999999999999875
No 158
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=79.37 Aligned_cols=61 Identities=15% Similarity=0.221 Sum_probs=53.1
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCC--ceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDE--TEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~--~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.+ +|||||+|.+.++|..|+..+++ ..+.|++|+|.+|++
T Consensus 41 ~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 41 IDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp TTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 368999999999999999 33332 69999999999999999998874 689999999999875
No 159
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.68 E-value=1.9e-16 Score=77.15 Aligned_cols=59 Identities=15% Similarity=0.230 Sum_probs=53.6
Q ss_pred CCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 4 KASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+++++|+++|++||.| .+.. ++|||||+|.+.++|..|+..||+..++|+.|+|.++++
T Consensus 40 ~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 40 VKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 7999999999999999 4433 468999999999999999999999999999999999874
No 160
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=77.13 Aligned_cols=63 Identities=8% Similarity=0.036 Sum_probs=53.2
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCc--eeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDET--EWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~--~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .+...+ .+|||||+|.+.++|..|+..+++. .+.|++|+|.++++
T Consensus 25 ~~~te~~L~~~F~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 25 ESVVEADLVEALEKFGTICYVMMMP----FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp SSCCHHHHHHHHTTTSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred CCCCHHHHHHHHHhCCCEEEEEEEC----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 368999999999999999 433332 2689999999999999999988765 58999999999875
No 161
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=75.55 Aligned_cols=61 Identities=26% Similarity=0.273 Sum_probs=53.7
Q ss_pred ccCCHHHHHHHhhccCc-e--EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCC-ceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLR-L--SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDE-TEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~-i--~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~-~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||. + ..+. ++|||||+|.+.++|..|+..||| ..++|+.|+|+++++
T Consensus 18 ~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 18 PAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp TTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 36799999999999999 5 3332 468999999999999999999999 999999999999875
No 162
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=6.1e-17 Score=78.43 Aligned_cols=62 Identities=18% Similarity=0.111 Sum_probs=52.2
Q ss_pred cCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCc--eeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDET--EWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~--~~~~~~i~v~~a~~ 68 (69)
++++++|+++|++||.| .+..-+ .+|||||+|.+.++|..|+..||+. .+.|++|.|.+|++
T Consensus 27 ~~te~dL~~lF~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 27 KNLRYQLLQLVEPFGVISNHLILN----KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp SSHHHHHHTTTGGGSCEEEEEECS----SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred cCCHHHHHHHHHhcCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 67899999999999999 332221 2489999999999999999999864 59999999999874
No 163
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.67 E-value=6e-16 Score=74.65 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=53.5
Q ss_pred cCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++|+++|++||.| .+... ++||||+|.+.++|.+|+..||+..+.|+.|+|.++++
T Consensus 22 ~~t~~~l~~~F~~~G~i~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 22 TVTEEILEKAFSQFGKLERVKKL------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp TCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 67999999999999999 43322 46999999999999999999999999999999999875
No 164
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.67 E-value=2.6e-16 Score=83.43 Aligned_cols=67 Identities=16% Similarity=0.243 Sum_probs=57.9
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.++.++|||||.|.+.++|..|+..+|+..+.|+.|.|..+.+
T Consensus 38 ~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 38 YELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 368999999999999999 6667777899999999999999999999999999999999999987643
No 165
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.67 E-value=4.1e-16 Score=86.07 Aligned_cols=64 Identities=9% Similarity=0.122 Sum_probs=56.7
Q ss_pred CCHHHHHHHhhccCce---EEeeeCC-CCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 4 KASRDRESKTYQLLRL---SLLSKSL-NRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i---~~~~~~~-~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+++++|+++|++||.| .++.++. +|.++|+|||.|.+.++|.+|+ .|||..+.|+.|.|.++++
T Consensus 223 ~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~ 290 (292)
T 2ghp_A 223 LDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADK 290 (292)
T ss_dssp CCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCC
T ss_pred CCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecC
Confidence 8899999999999999 5555544 4899999999999999999999 9999999999999999876
No 166
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.6e-15 Score=77.47 Aligned_cols=66 Identities=12% Similarity=0.176 Sum_probs=57.8
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++ +++++|+|||.|.+.++|..|+..+||..+.|+.|.|..+.+
T Consensus 10 ~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 10 KAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 368999999999999999 555554 578999999999999999999999999999999999998754
No 167
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.2e-16 Score=75.39 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=53.8
Q ss_pred cCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++|+++|++||.| .+.. ++|||||+|.+.++|..|+..|||..+.|++|+|.++++
T Consensus 22 ~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 22 NVSKEDLFRIFSPYGHIMQINI------KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp CCCHHHHHHHHTTTCCCCEEEE------ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred cCCHHHHHHHHHhcCCEEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 68999999999999999 4333 268999999999999999999999999999999998864
No 168
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-15 Score=71.53 Aligned_cols=61 Identities=30% Similarity=0.393 Sum_probs=53.7
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .+... ++||||+|.+.++|.+|+..||+..+.|+.|+|+++++
T Consensus 20 ~~~t~~~l~~~F~~~G~v~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 20 PTCTNQELRAKFEEYGPVIECDIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp SSCCHHHHHHHHHTTSCCCEEEEC------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 367999999999999999 43332 35999999999999999999999999999999999875
No 169
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.66 E-value=8.7e-16 Score=79.11 Aligned_cols=65 Identities=14% Similarity=0.144 Sum_probs=57.1
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeC---CeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWN---GRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~---~~~i~v~~a~ 67 (69)
.++++++|+++|++||.| .++.+ .+|.++|+|||.|.+.++|.+|+..|||..+. +++|.|.+|+
T Consensus 105 ~~~t~~~l~~~F~~~G~i~~v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 105 KKCTENDIRVMFSSFGQIEECRILRG-PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEEC-TTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CcCCHHHHHHHHHhCCCEEEEEEEEC-CCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 367899999999999999 56565 46899999999999999999999999998776 3899999874
No 170
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.5e-15 Score=72.73 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=54.0
Q ss_pred ccCCHHHHHHHhhcc--Cce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQL--LRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~--g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++| |.| .+.. .+|||||+|.+.++|..|+..|||..+.|+.|+|.++++
T Consensus 25 ~~~t~~~l~~~F~~~g~g~v~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 25 LSTSEEMIEKEFNNIKPGAVERVKK------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp TTCCHHHHHHHHHTTSTTCEEEEEE------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred CCCCHHHHHHHHHhcCCcceEEEEE------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 368999999999999 888 4432 257999999999999999999999999999999999876
No 171
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.66 E-value=1.4e-15 Score=83.65 Aligned_cols=67 Identities=18% Similarity=0.169 Sum_probs=61.9
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.+|.++|+|||.|.+.++|..|+..+||..+.|+.|.|.++++
T Consensus 105 ~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 105 PSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174 (284)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCG
T ss_pred CcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 367899999999999999 6778888999999999999999999999999999999999999998764
No 172
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.5e-16 Score=74.51 Aligned_cols=63 Identities=13% Similarity=0.005 Sum_probs=54.2
Q ss_pred ccCCHHHHHHHhhccCce-E---EeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-S---LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~---~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| . ++.++.+ |.|||+|.+.++|..|+..|||..++|+.|+|.++++
T Consensus 25 ~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 25 PHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp SSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 368999999999999999 3 3444433 3399999999999999999999999999999999876
No 173
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.66 E-value=3.7e-16 Score=76.98 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=51.9
Q ss_pred HHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 7 RDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 7 ~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++|++.|++||.| .+...+.+ ++|++||.|.+.++|.+|+..|||..++|+.|.|.++.+
T Consensus 32 edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 32 DDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp HHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcH
Confidence 5899999999999 54444333 589999999999999999999999999999999998753
No 174
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=6.4e-16 Score=72.75 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=54.1
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++| .| .+..+ +++|||||+|.+.++|..|+..+||..++|++|+|+++..
T Consensus 15 ~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 15 QDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp SSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 368999999999999 77 33223 5789999999999999999999999999999999998754
No 175
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.66 E-value=1.1e-16 Score=80.05 Aligned_cols=64 Identities=20% Similarity=0.147 Sum_probs=55.8
Q ss_pred ccCCHHHHHHHhhccCce----EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLRL----SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
+++++++|+++|++|+.+ .++.++. |+++|||||+|.+.++|.+|+. +++..++|+.|+|..+.
T Consensus 52 ~~~te~dL~~~F~~~~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 52 FGCTKEEIVQFFSGLEIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKSS 119 (126)
T ss_dssp TTCCHHHHHHHTTTSCEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEEC
T ss_pred CCCCHHHHHHHHhcCCceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEECC
Confidence 578999999999999644 4566665 9999999999999999999998 57899999999998775
No 176
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.65 E-value=6.3e-16 Score=82.41 Aligned_cols=63 Identities=14% Similarity=0.045 Sum_probs=54.3
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
.++++++|+++|++||.| .+..-+ ..+|||||+|.+.++|+.|+..|||..+.|+.|+|.+++
T Consensus 15 ~~~~~~~L~~~F~~~G~v~~v~i~~---~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 15 SKMNCDRVFNVFCLYGNVEKVKFMK---SKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp TTCCHHHHHHHHTTTSCEEEEEECT---TSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred ccCCHHHHHHHHHhcCCeEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 368999999999999999 332221 136999999999999999999999999999999999875
No 177
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.65 E-value=1.3e-15 Score=83.76 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=58.4
Q ss_pred CCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 4 KASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
+++++|+++|++||.| .++.+ .+|.++|+|||.|.+.++|.+|+..|||..+.|+.|+|.++++
T Consensus 197 ~~~~~l~~~f~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 263 (284)
T 3smz_A 197 NDVDALCRALSAVHSPTFCQLACG-QDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAP 263 (284)
T ss_dssp CCHHHHHHHTCSSSCCSEEEEEEC-SSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCHHHHHHHhhCCCCeEEEEEEEC-CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecC
Confidence 3889999999999999 55555 4799999999999999999999999999999999999999876
No 178
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.1e-15 Score=71.14 Aligned_cols=61 Identities=26% Similarity=0.324 Sum_probs=53.7
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .+... ++||||+|.+.++|..|+..|||..+.|+.|+|.++++
T Consensus 19 ~~~t~~~l~~~F~~~G~v~~~~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 19 AACTSQELRSLFERRGRVIECDVV------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCHHHHHHHHHcCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 367999999999999999 43332 35999999999999999999999999999999999875
No 179
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.3e-15 Score=73.50 Aligned_cols=61 Identities=8% Similarity=0.027 Sum_probs=50.9
Q ss_pred cCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++|+++|++||.| .+... ++++|||||+|.+.++|..|+..+++ +.+++|+|.++++
T Consensus 28 ~~te~~L~~~F~~~G~V~~v~i~---~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 28 GYSKDVLLRLLQKYGEVLNLVLS---SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEG 89 (100)
T ss_dssp SCCHHHHHHHHHTTSCEEEEEEE---SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEc---cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccC
Confidence 47899999999999999 33222 46789999999999999999997544 6789999998864
No 180
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.63 E-value=4.2e-15 Score=78.68 Aligned_cols=65 Identities=11% Similarity=0.051 Sum_probs=56.1
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++ ++.++|||||+|.+.++|..|+..++ ..+.|+.|.|..++.
T Consensus 119 ~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 119 TDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp TTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred CcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 357899999999999999 556654 58899999999999999999998554 699999999998764
No 181
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2.2e-16 Score=77.57 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=51.9
Q ss_pred CCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCC--ceeCCeEEEEEeecC
Q 045845 4 KASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDE--TEWNGRIIHVEKSKS 68 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~--~~~~~~~i~v~~a~~ 68 (69)
+++++|+++|++||.| .+..- +++|||||+|.+.++|..|+..|++ ..+.|++|+|.+|++
T Consensus 38 ~te~~L~~lF~~fG~V~~v~i~----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 38 YSDSAVLKLAEPYGKIKNYILM----RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp CCSHHHHTTTTTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCHHHHHHHHHhcCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 8899999999999999 33332 2479999999999999999998864 569999999999874
No 182
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.63 E-value=9.5e-16 Score=75.37 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=51.2
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeE-----EEEEeec
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRI-----IHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~-----i~v~~a~ 67 (69)
.++++++|+++|++||.| .+..... |||||+|.+.++|+.|+..|||..++|+. |+|..+.
T Consensus 26 ~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 26 PSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp SSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 368899999999999999 3322221 89999999999999999999999999988 7776654
No 183
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=75.01 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=44.8
Q ss_pred ccCCHHHHHHHhhccCce--EEeeeCCC---CCceeEEEEEEcCHHHHHHHHHhh
Q 045845 2 IGKASRDRESKTYQLLRL--SLLSKSLN---RDSHGFGFLSLDRDEDADAAIRTL 51 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i--~~~~~~~~---~~~~g~~fv~~~~~~~a~~ai~~l 51 (69)
.++++++|+++|++||.| .++.++.+ |+++|||||+|.+.++|++|+..+
T Consensus 18 ~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 18 PDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp TTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 368999999999999999 66666666 799999999999999999999988
No 184
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=72.50 Aligned_cols=58 Identities=14% Similarity=0.156 Sum_probs=50.5
Q ss_pred cCCHHH----HHHHhhccC-ce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRD----RESKTYQLL-RL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~----l~~~f~~~g-~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++ |+++|++|| .| .+ ++ |+|||.|.+.++|.+|++.|||.++.|++|+|++|+.
T Consensus 20 ~~~~~~lk~~L~~lF~~yGG~Vl~V-----tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 20 NKDGKSVSNRLRRLSDNCGGKVLSI-----TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp TSCHHHHHHHHHHHHHTTTCCEEEC-----CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred cCCHHHHHHHHHHHHHHcCCeeEEE-----ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 556665 668999995 98 65 33 9999999999999999999999999999999999874
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=5.9e-15 Score=81.10 Aligned_cols=66 Identities=12% Similarity=0.190 Sum_probs=57.1
Q ss_pred ccCCHHHHH----HHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRE----SKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~----~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+ .+|++||.| .+... .+++++|||||+|.+.++|..|+..+||..+.|+.|+|.++++
T Consensus 19 ~~~~~~~l~~~L~~~F~~~G~i~~v~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 89 (282)
T 3pgw_A 19 EKIKKDELKKSLYAIFSQFGQILDILVS-RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKT 89 (282)
T ss_pred CCCCHHHHHHHHHHHHhccCCeEEEEEc-CCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEecc
Confidence 367889966 899999999 43333 3788999999999999999999999999999999999998764
No 186
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.61 E-value=6.7e-15 Score=75.77 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=56.9
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCC--CceeEEEEEEcCHHHHHHHHHhhCCceeC---CeEEEEEeec
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNR--DSHGFGFLSLDRDEDADAAIRTLDETEWN---GRIIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~--~~~g~~fv~~~~~~~a~~ai~~l~~~~~~---~~~i~v~~a~ 67 (69)
.++++++|+++|++||.| .++.++.++ .++|||||.|.+.++|..|+..+|+..+. ++.+.+..++
T Consensus 13 ~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~ 86 (175)
T 3nmr_A 13 RTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPAD 86 (175)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECG
T ss_pred CCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccc
Confidence 368999999999999999 777887776 89999999999999999999999998775 5666666554
No 187
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.60 E-value=3e-15 Score=76.74 Aligned_cols=65 Identities=17% Similarity=0.360 Sum_probs=56.7
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.++.+|.++|||||.|.+.++|..|+.. +..+.|+.|.|..+.+
T Consensus 13 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 13 WDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIP 80 (167)
T ss_dssp TTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCC
T ss_pred CCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccc
Confidence 368999999999999999 6677778899999999999999999999984 6788999888877653
No 188
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.59 E-value=6.3e-16 Score=79.92 Aligned_cols=66 Identities=20% Similarity=0.289 Sum_probs=58.7
Q ss_pred ccCCHHHHHHHhhccCce--EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL--SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|+.||.+ ..+.+..++.++|||||.|.+.++|..|+. +||..+.|+.|+|..+++
T Consensus 23 ~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~ 90 (175)
T 1fje_B 23 PNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG 90 (175)
T ss_dssp TTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCC
T ss_pred CCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCC
Confidence 367899999999999988 456666788899999999999999999995 999999999999998764
No 189
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.58 E-value=1.3e-14 Score=68.52 Aligned_cols=60 Identities=13% Similarity=0.230 Sum_probs=46.6
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCce--eCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETE--WNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~--~~~~~i~v~~a~~ 68 (69)
+++++++|+++|++||.| .+..-. .++|||||+|.+.++|.+ +++.. +.|++|.|..|++
T Consensus 21 ~~~te~~L~~~F~~~G~i~~v~i~~---~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 21 EDMTAEELQQFFCQYGEVVDVFIPK---PFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp TTCCHHHHHHHHTTTSCEEEEECCS---SCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCHHHHHHHHhccCCEEEEEEee---CCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 468999999999999999 332221 278999999999998873 56655 4599999998875
No 190
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=2.7e-14 Score=66.73 Aligned_cols=59 Identities=12% Similarity=0.257 Sum_probs=50.0
Q ss_pred ccCCHHHHHHHhhcc----C-------ce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEe
Q 045845 2 IGKASRDRESKTYQL----L-------RL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~----g-------~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~ 65 (69)
.++++++|+++|++| | .+ .+... ..+|||||+|.+.++|.+|+ .+||..+.|+.|+|+.
T Consensus 16 ~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~----~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 16 FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN----QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC----SSSSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred CCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec----CCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 367999999999999 8 77 33222 23799999999999999999 8999999999999874
No 191
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.56 E-value=3e-14 Score=78.27 Aligned_cols=63 Identities=14% Similarity=0.107 Sum_probs=53.7
Q ss_pred cCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeC-CeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWN-GRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~-~~~i~v~~a~~ 68 (69)
++++++|+++|++||.| .+...+. .+|+|||+|.+.++|.+|+..|||..+. |+.|+|.+++.
T Consensus 218 ~~~~~~l~~~F~~~G~i~~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 218 ETNELMLSMLFNQFPGFKEVRLVPG---RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred cCCHHHHHHHHHhcCCeEEEEEecC---CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 57899999999999999 3222211 1589999999999999999999999999 99999999873
No 192
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.54 E-value=2.6e-14 Score=78.83 Aligned_cols=66 Identities=17% Similarity=0.190 Sum_probs=54.0
Q ss_pred ccCCHHHHHHHhhccC-ce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLL-RL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g-~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|.++|++|| .| .++.++ .+.++|||||.|.+.++|..|+..+||..+.|+.|.|.++.+
T Consensus 127 ~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 196 (292)
T 2ghp_A 127 PSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNP 196 (292)
T ss_dssp TTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 3678999999999999 88 444444 378899999999999999999999999999999999998765
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.54 E-value=1.9e-14 Score=77.48 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=54.0
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++|+++|++||.| .++.++ +|||||+|.+.++|..|+..+||..+.|+.|.|..+++
T Consensus 46 ~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 46 RVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp TCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred cCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 68999999999999999 343332 78999999999999999999999999999999998763
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.53 E-value=9.3e-14 Score=76.00 Aligned_cols=66 Identities=15% Similarity=0.081 Sum_probs=56.5
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCC-ceeC---CeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDE-TEWN---GRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~-~~~~---~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .++.+ .+|.++|+|||.|.+.++|.+|+..+|+ ..+. +++|.|..+++
T Consensus 106 ~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 106 PVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 357899999999999999 66777 5899999999999999999999999955 4444 89999987754
No 195
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.52 E-value=4.4e-15 Score=77.84 Aligned_cols=66 Identities=14% Similarity=0.272 Sum_probs=53.6
Q ss_pred ccCCHHHHHHHhhccCce-E-------EeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-S-------LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~-------~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.+ . .+.+...+.++|||||+|.+.++|..|+ .+||..+.|+.|+|..+++
T Consensus 14 ~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~ 87 (198)
T 2yh0_A 14 FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHD 87 (198)
T ss_dssp TTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCC
T ss_pred CCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCC
Confidence 368999999999999533 1 2222234567899999999999999999 7999999999999998754
No 196
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.51 E-value=4.3e-14 Score=77.01 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=51.5
Q ss_pred CHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCcee------------CCeEEEEEeecC
Q 045845 5 ASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEW------------NGRIIHVEKSKS 68 (69)
Q Consensus 5 ~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~------------~~~~i~v~~a~~ 68 (69)
++++|+++|++||.| .++. ++|||||.|.+.++|+.|+..|+|..+ .|+.|.|.+|++
T Consensus 156 tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 156 IESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp HHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred cHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccC
Confidence 589999999999999 3332 479999999999999999999999999 899999999874
No 197
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.50 E-value=1.5e-13 Score=78.08 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=51.2
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeC---Ce--EEEEEeec
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWN---GR--IIHVEKSK 67 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~---~~--~i~v~~a~ 67 (69)
+++++++|+++|++||.| .+...+ ++|||||+|.+.++|++|+..|||.++. |+ .+.+.++.
T Consensus 30 ~~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 30 NGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp GTCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 468999999999999999 655543 4799999999999999999999999883 34 46666553
No 198
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.50 E-value=1.9e-14 Score=75.67 Aligned_cols=63 Identities=11% Similarity=0.032 Sum_probs=54.0
Q ss_pred cCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 3 GKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
++++++|+++|++||.| .+..... .+|||||.|.+.++|..|+..+||..+.|+.|+|..+++
T Consensus 15 ~~~~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 15 RVTPQSLFILFGVYGDVQRVKILFN---KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp SCCHHHHHHHHHTTCCCSEEECSTT---CSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred cCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 68999999999999999 4322221 178999999999999999999999999999999998763
No 199
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.50 E-value=7e-14 Score=73.51 Aligned_cols=64 Identities=16% Similarity=0.091 Sum_probs=55.0
Q ss_pred cCCHHHHHHHhhccC-ce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeC-CeEEEEEeecCC
Q 045845 3 GKASRDRESKTYQLL-RL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWN-GRIIHVEKSKST 69 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g-~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~-~~~i~v~~a~~~ 69 (69)
++++++|+++|++|| .| .+...+. .+|+|||+|.+.++|..|+..|||..+. |+.|+|.++++.
T Consensus 131 ~~~~~~l~~~f~~~G~~v~~v~i~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 131 SVSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TCCHHHHHHHHHHTTSCCCEEEESST---TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCCHHHHHHHHHHcCCCceEEEEEeC---CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 578999999999999 88 4333221 2689999999999999999999999999 999999999873
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.50 E-value=1.3e-13 Score=75.37 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=55.0
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .+... +++|||||.|.+.++|..|+..+||..+.|+.|+|..+.+
T Consensus 32 ~~~te~~l~~~F~~~G~i~~v~i~----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 32 TDITEEDFKRLFERYGEPSEVFIN----RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp TTCCHHHHHHHTGGGCCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEe----CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 468999999999999999 44332 2469999999999999999999999999999999998764
No 201
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.49 E-value=1.9e-13 Score=73.55 Aligned_cols=64 Identities=16% Similarity=0.105 Sum_probs=54.9
Q ss_pred cCCHHHHHHHhhccC-ce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeC-CeEEEEEeecCC
Q 045845 3 GKASRDRESKTYQLL-RL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWN-GRIIHVEKSKST 69 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g-~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~-~~~i~v~~a~~~ 69 (69)
++++++|+++|++|| .| .+..-+ ..+|+|||+|.+.++|.+|+..|||..+. |+.|+|.++++.
T Consensus 162 ~~t~~~l~~~f~~~G~~i~~v~i~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 162 SVSEEDLKVLFSSNGGVVKGFKFFQ---KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp TCCHHHHHHHHHTTSCCEEEEEECS---SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred cCCHHHHHHHHHHcCCCeeEEEEEE---CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 578999999999999 88 333322 13689999999999999999999999999 999999999873
No 202
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.49 E-value=2e-13 Score=72.75 Aligned_cols=64 Identities=14% Similarity=0.045 Sum_probs=51.1
Q ss_pred ccCCHHHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCe----EEEEEe
Q 045845 2 IGKASRDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGR----IIHVEK 65 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~----~i~v~~ 65 (69)
.++++++|+++|++||.+ .+...+..+.++|+|||+|.+.++|..|+..|||..+.|+ ++.|++
T Consensus 133 ~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 133 LEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp TTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred CCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 367999999999999985 2222233356679999999999999999999999999886 455554
No 203
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.48 E-value=1.7e-14 Score=74.22 Aligned_cols=63 Identities=11% Similarity=0.207 Sum_probs=52.2
Q ss_pred ccCCHHHHHHHhhcc----C-------ceEEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQL----L-------RLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++| | .+ .+...+.++|||||+|.+.++|..|+ .+||..+.|+.|+|..+++
T Consensus 14 ~~~t~~~l~~~F~~~g~~~g~~~~~~~~v---~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~ 87 (172)
T 2g4b_A 14 FGITEEAMMDFFNAQMRLGGLTQAPGNPV---LAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHD 87 (172)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCSSSSCSE---EEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSS
T ss_pred cccCHHHHHHHHHHHhhhcccccCCCCce---eeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcc
Confidence 368999999999999 5 44 11122445899999999999999999 7999999999999987754
No 204
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.47 E-value=4.2e-13 Score=71.93 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=54.0
Q ss_pred HHHHHHHhhccCce---EEeeeC----CCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 6 SRDRESKTYQLLRL---SLLSKS----LNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 6 ~~~l~~~f~~~g~i---~~~~~~----~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
++++...|++||.| .++.+. .++.++|++||.|.+.++|.+|+..|||..+.||.|.+.++.
T Consensus 143 ~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 143 EGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 57899999999999 455433 345899999999999999999999999999999999998865
No 205
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=6.6e-14 Score=65.72 Aligned_cols=62 Identities=11% Similarity=0.145 Sum_probs=47.1
Q ss_pred ccCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 2 IGKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 2 ~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.++++++|+++|++||.| .+.... .++|||||+|.+.++|+++... ...+.+++|+|..+++
T Consensus 15 ~~~te~~l~~~F~~~G~i~~v~i~~---~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 15 GDMTEDELREFFSQYGDVMDVFIPK---PFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp SSSCHHHHHHHSTTTSCCCEEECCS---SCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCCCHHHHHHHHHHcCCeeEEEEec---CCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 368999999999999999 332221 2689999999999998754221 2455899999998865
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1.4e-12 Score=61.65 Aligned_cols=53 Identities=9% Similarity=0.113 Sum_probs=47.1
Q ss_pred HHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecC
Q 045845 7 RDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKS 68 (69)
Q Consensus 7 ~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~ 68 (69)
.+|...|++||.+ +++.++ +||+|.+.++|.+|+. |||..+.|+.|+|+.++|
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred HHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence 5799999999988 555542 8999999999999999 999999999999998876
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=6.3e-11 Score=56.32 Aligned_cols=52 Identities=8% Similarity=0.122 Sum_probs=45.3
Q ss_pred HHHHHHhhccCce---EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 7 RDRESKTYQLLRL---SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 7 ~~l~~~f~~~g~i---~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
.+|.+.|++||.+ +++.++ +||+|.+.++|.+|+. |||..+.|+.|+|+.-.
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred HHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 4689999999977 665552 9999999999999999 99999999999998643
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=7.5e-09 Score=51.32 Aligned_cols=59 Identities=7% Similarity=-0.024 Sum_probs=46.1
Q ss_pred CCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcC-HHHHHHHHHhhC--CceeCCeEEEEEee
Q 045845 4 KASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDR-DEDADAAIRTLD--ETEWNGRIIHVEKS 66 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~-~~~a~~ai~~l~--~~~~~~~~i~v~~a 66 (69)
++.++|+++|++||.| .+-... |. ..|||.|.+ .++|..|+..+| +..+.+..++++..
T Consensus 31 ~sredLke~F~~~G~V~~Vd~~~--g~--~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 31 TCREDLHILFSNHGEIKWIDFVR--GA--KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp CCHHHHHHHTCSSCCEEEEECCT--TC--SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred CCHHHHHHHHHhcCCEEEEEEec--CC--CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 7899999999999999 443322 22 259999999 789999999995 66788887777643
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.62 E-value=4.2e-07 Score=44.30 Aligned_cols=58 Identities=10% Similarity=0.046 Sum_probs=50.5
Q ss_pred CCHHHHHHHhhcc-----Cce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEe
Q 045845 4 KASRDRESKTYQL-----LRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65 (69)
Q Consensus 4 ~~~~~l~~~f~~~-----g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~ 65 (69)
+++..|+.+..++ |.+ +++..++- +-|+|+|.+...|.+|.-.|+|.++.|+.|++..
T Consensus 33 vndarIr~lve~~~~i~~g~i~KI~L~pDH----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 33 VSPSLICQFLQEEIHINEKDIRKILLVSDF----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp CCHHHHHHHHHHHTCCCTTTCSEEEEETTT----TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCHHHHHHHHhhhhccCccceeEEEEecCC----CceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 5778899999999 888 77777653 4599999999999999999999999999999863
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.29 E-value=6.9e-06 Score=39.63 Aligned_cols=59 Identities=14% Similarity=-0.002 Sum_probs=48.2
Q ss_pred HHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeecCC
Q 045845 7 RDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSKST 69 (69)
Q Consensus 7 ~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~~~ 69 (69)
+.++.+|..|+++ ..-.-+.-. -..|.|.+.++|.+|-..|++..+.|+.++|-++++|
T Consensus 25 ~~~e~Lf~~~~~~~tF~~lkSFR----Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 25 AKFESLFRTYDKDTTFQYFKSFK----RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp HHHHHHHHTTCSSCEEEEETTTT----EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred HHHHHHHHhhCcCcceeecCcce----EEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 5789999999988 433333222 3689999999999999999999999999999998764
No 211
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.76 E-value=6.7e-05 Score=37.58 Aligned_cols=59 Identities=10% Similarity=0.062 Sum_probs=43.7
Q ss_pred HHHHHHhhccCce--EEeeeC-C----------C---C-CceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEee
Q 045845 7 RDRESKTYQLLRL--SLLSKS-L----------N---R-DSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKS 66 (69)
Q Consensus 7 ~~l~~~f~~~g~i--~~~~~~-~----------~---~-~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a 66 (69)
..+-+.|++||.| .....+ . . . ....+-.+.|.+..+|.+|+. .||..+.|..|-|...
T Consensus 21 ~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii~G~mIGV~Py 96 (132)
T 3p3d_A 21 NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVFNGVLLGVIPY 96 (132)
T ss_dssp HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEETTEECEEEEC
T ss_pred HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEeCcEEEEEEEC
Confidence 4678899999999 232111 0 0 0 124688999999999999999 9999999987777643
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.70 E-value=0.00077 Score=33.27 Aligned_cols=54 Identities=11% Similarity=0.046 Sum_probs=41.5
Q ss_pred HHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCC-eEEEEEe
Q 045845 7 RDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNG-RIIHVEK 65 (69)
Q Consensus 7 ~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~-~~i~v~~ 65 (69)
..+.++|++||.| ..... ....+-.+.|.+..+|++||. .||..+.+ -.|-|..
T Consensus 38 ~~VL~~F~~~G~Iv~~~~~----~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 38 SYILLQFAQYGNILKHVMS----NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp HHHHHHHHTTSCEEEEEEC----SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred HHHHHHHHhhCcEEEeccC----CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 5688899999999 43331 123589999999999999999 89999985 5555543
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.49 E-value=0.00059 Score=32.61 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=34.7
Q ss_pred CCHHHHHHHhhccCce--EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhh
Q 045845 4 KASRDRESKTYQLLRL--SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTL 51 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i--~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l 51 (69)
....||.++|++||.+ +.+.|. .||+.|.+++.|..|+..+
T Consensus 27 wKt~DI~~lFs~fggv~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 27 WKTSDLYQLFSAFGNIQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCHHHHHHHHTTTCSCCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred hhhHHHHHHhhccCCEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 4568999999999988 776663 6999999999999998866
No 214
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.45 E-value=5.3e-05 Score=38.17 Aligned_cols=40 Identities=8% Similarity=0.108 Sum_probs=35.4
Q ss_pred CCceeEEEEEEcCHHHHHHHHHhh-CCceeCCeEEEEEeecC
Q 045845 28 RDSHGFGFLSLDRDEDADAAIRTL-DETEWNGRIIHVEKSKS 68 (69)
Q Consensus 28 ~~~~g~~fv~~~~~~~a~~ai~~l-~~~~~~~~~i~v~~a~~ 68 (69)
...+|+++++|.+.++|++|+..+ ||..++| .|.+..+.+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 456899999999999999999999 9999999 888887653
No 215
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.30 E-value=0.00032 Score=35.44 Aligned_cols=32 Identities=9% Similarity=0.105 Sum_probs=25.8
Q ss_pred EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCC
Q 045845 20 SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDE 53 (69)
Q Consensus 20 ~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~ 53 (69)
.++++. +.++||+||+|.+.++|++|+..+++
T Consensus 4 kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 4 KLILNG--KTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEecC--ccccchhHHHHHHHHhHHHHHHhhcc
Confidence 345553 36899999999999999999987764
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.29 E-value=0.00054 Score=32.81 Aligned_cols=42 Identities=19% Similarity=0.168 Sum_probs=34.5
Q ss_pred CCHHHHHHHhhccCce--EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhC
Q 045845 4 KASRDRESKTYQLLRL--SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLD 52 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i--~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~ 52 (69)
....||..+|++||.+ ..+.| ..||+.|.+++.|..|+..+.
T Consensus 17 wKt~Di~~lFs~fggv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 17 WKTSDLYQLFSAFGNIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp CCHHHHHHHTTTSEEEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred hhhHHHHHHHhccCCEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 4568999999999988 56555 369999999999999988764
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.81 E-value=0.00083 Score=39.92 Aligned_cols=44 Identities=5% Similarity=-0.105 Sum_probs=30.8
Q ss_pred cCCHHHHHHHhhccCce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHH
Q 045845 3 GKASRDRESKTYQLLRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIR 49 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~ 49 (69)
.+++++|.++|++||+| .+.+++..| -|+.|+|.+.+++..++.
T Consensus 63 ~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 63 KISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp C---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHS
T ss_pred CCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHh
Confidence 35788999999999999 666776555 699999999888776654
No 218
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.35 E-value=0.081 Score=24.82 Aligned_cols=56 Identities=7% Similarity=0.026 Sum_probs=42.9
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCC--ceeEEEEEEcCHHHHHHHHHhhCCceeCC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRD--SHGFGFLSLDRDEDADAAIRTLDETEWNG 58 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~--~~g~~fv~~~~~~~a~~ai~~l~~~~~~~ 58 (69)
+++++++.+.++....+ ..+..+.+.+ .-+-||+.|.+.+++..-...++|+.+.+
T Consensus 12 ~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 12 TLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp TCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred CCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 57899999999988777 3333333322 24679999999999999999999998754
No 219
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.65 E-value=0.15 Score=24.50 Aligned_cols=56 Identities=13% Similarity=0.052 Sum_probs=40.9
Q ss_pred cCCHHHHHHHhhcc-----Cce-EEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEe
Q 045845 3 GKASRDRESKTYQL-----LRL-SLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEK 65 (69)
Q Consensus 3 ~~~~~~l~~~f~~~-----g~i-~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~ 65 (69)
+++++.|+-+|++- |.+ .+...+ +-|+|+|.+...+++.+. -..+.+++.++.|..
T Consensus 19 ~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 19 AVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLA-QADHELHGAQLSLRP 80 (104)
T ss_dssp TSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEE
T ss_pred CCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEc
Confidence 46778899999872 455 554543 468999999999988877 435777777777764
No 220
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=93.30 E-value=0.18 Score=22.37 Aligned_cols=35 Identities=11% Similarity=0.325 Sum_probs=26.6
Q ss_pred eEEEEEEcCHHHHHHHHHhhCCceeCCeEEEEEeec
Q 045845 32 GFGFLSLDRDEDADAAIRTLDETEWNGRIIHVEKSK 67 (69)
Q Consensus 32 g~~fv~~~~~~~a~~ai~~l~~~~~~~~~i~v~~a~ 67 (69)
.|.|++.+. +.+..++..+++..+.|+.++++.++
T Consensus 41 ~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 41 NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 378999975 46888999999999999999888765
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.63 E-value=0.65 Score=28.06 Aligned_cols=46 Identities=15% Similarity=0.045 Sum_probs=35.1
Q ss_pred CCHHHHHHHhhccCceEEeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCc
Q 045845 4 KASRDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDET 54 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~ 54 (69)
+...+|.+.|+.||.+.+.+-.. ..+||.+.+.+.+..++..++..
T Consensus 451 ~~~~~i~~~fs~fg~v~V~widd-----t~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 451 WKTSDLYQLFSAFGNIQISWIDD-----TSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp CCHHHHHHHGGGGCCCEEEECSS-----SEEEEECSCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHhcCCEEEEEEcC-----CeEEEEECCHHHHHHHHHHHHhC
Confidence 45679999999999883323222 36999999999999999988643
No 222
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=87.41 E-value=0.99 Score=21.42 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=36.8
Q ss_pred cCCHHHHHHHhhccCce---EEeeeCCCCC--ceeEEEEEEcCHHHHHHHHHhhCCceeCC
Q 045845 3 GKASRDRESKTYQLLRL---SLLSKSLNRD--SHGFGFLSLDRDEDADAAIRTLDETEWNG 58 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i---~~~~~~~~~~--~~g~~fv~~~~~~~a~~ai~~l~~~~~~~ 58 (69)
+++++++.+.++..-.+ ..+..+.+.+ .-..|||.|.+.++...-....+|..+.+
T Consensus 20 ~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 20 GLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred CCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 56777776666654434 1111111111 12569999999999999999999998754
No 223
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=74.30 E-value=1.3 Score=15.28 Aligned_cols=13 Identities=8% Similarity=-0.163 Sum_probs=9.7
Q ss_pred CHHHHHHHhhccC
Q 045845 5 ASRDRESKTYQLL 17 (69)
Q Consensus 5 ~~~~l~~~f~~~g 17 (69)
...+++++|.++|
T Consensus 13 aikqvkklfkkwg 25 (26)
T 1ytr_A 13 AIKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcC
Confidence 3467888888876
No 224
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=66.76 E-value=5.8 Score=18.62 Aligned_cols=19 Identities=16% Similarity=-0.064 Sum_probs=14.6
Q ss_pred CccCCHHHHHHHhhccCce
Q 045845 1 MIGKASRDRESKTYQLLRL 19 (69)
Q Consensus 1 ~~~~~~~~l~~~f~~~g~i 19 (69)
|...+++.+.+.|+..|.|
T Consensus 1 mm~~~~~~i~e~l~~lg~i 19 (105)
T 2od0_A 1 MDKPILKDSMKLFEALGTI 19 (105)
T ss_dssp --CTHHHHHHHHHGGGSCC
T ss_pred CcchHHHHHHHHHhccCCc
Confidence 5566788899999999888
No 225
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=59.41 E-value=11 Score=17.27 Aligned_cols=25 Identities=12% Similarity=0.352 Sum_probs=20.6
Q ss_pred ceeEEEEEEcCHHHHHHHHHhhCCc
Q 045845 30 SHGFGFLSLDRDEDADAAIRTLDET 54 (69)
Q Consensus 30 ~~g~~fv~~~~~~~a~~ai~~l~~~ 54 (69)
-.||-||++...++...+++...|.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCc
Confidence 6799999999888888888777654
No 226
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=59.04 E-value=8.9 Score=18.32 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=20.9
Q ss_pred ceeEEEEEEcCHHHHHHHHHhhCCc
Q 045845 30 SHGFGFLSLDRDEDADAAIRTLDET 54 (69)
Q Consensus 30 ~~g~~fv~~~~~~~a~~ai~~l~~~ 54 (69)
-+||-||+-.+..+...|+..+.+.
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 5799999999999999998766544
No 227
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=54.50 E-value=22 Score=18.64 Aligned_cols=45 Identities=7% Similarity=0.053 Sum_probs=29.8
Q ss_pred cCCHHHHHHHh--hccCce--EEeeeCCCCCceeEEEEEEcC-HHHHHHHHH
Q 045845 3 GKASRDRESKT--YQLLRL--SLLSKSLNRDSHGFGFLSLDR-DEDADAAIR 49 (69)
Q Consensus 3 ~~~~~~l~~~f--~~~g~i--~~~~~~~~~~~~g~~fv~~~~-~~~a~~ai~ 49 (69)
+.+...|.+.| ..|.++ +.+..+ .-+.|++.|.|.+ -.-...|+.
T Consensus 32 G~s~~~l~~~~~~~~F~p~kv~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 32 GESGSKLRDEYILRGFNPTRVRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CCCSHHHHHHHHHTTCCCSEEEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCCceeEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 34567888877 899988 444443 3478999999974 333334443
No 228
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=53.44 E-value=7.5 Score=18.55 Aligned_cols=19 Identities=0% Similarity=-0.148 Sum_probs=14.7
Q ss_pred CccCCHHHHHHHhhccCce
Q 045845 1 MIGKASRDRESKTYQLLRL 19 (69)
Q Consensus 1 ~~~~~~~~l~~~f~~~g~i 19 (69)
|..++.+.|.+.|.-||-.
T Consensus 23 ~~~Vsae~L~eEfdefGi~ 41 (101)
T 2keb_A 23 SMSASAQQLAEELQIFGLD 41 (101)
T ss_dssp -CCCCHHHHHHHHHHHTCB
T ss_pred hhhccHHHHHHHHHHcCCC
Confidence 5678889999999888853
No 229
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=51.42 E-value=24 Score=18.20 Aligned_cols=34 Identities=3% Similarity=0.011 Sum_probs=25.4
Q ss_pred CCHHHHHHHhhccCce------EEeeeCCCCCceeEEEEE
Q 045845 4 KASRDRESKTYQLLRL------SLLSKSLNRDSHGFGFLS 37 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i------~~~~~~~~~~~~g~~fv~ 37 (69)
.++++|.++-.+.|.+ .+..+..+|..+.++|-.
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 5789999999999977 344443478888887765
No 230
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=49.14 E-value=12 Score=14.42 Aligned_cols=10 Identities=10% Similarity=-0.027 Sum_probs=6.3
Q ss_pred ccCCHHHHHH
Q 045845 2 IGKASRDRES 11 (69)
Q Consensus 2 ~~~~~~~l~~ 11 (69)
|.+|++||++
T Consensus 5 ~~Vte~DIr~ 14 (36)
T 2l2l_B 5 FIVTDEDIRK 14 (36)
T ss_dssp CCCCHHHHHH
T ss_pred eeeCHHHHHH
Confidence 4567777664
No 231
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=44.45 E-value=28 Score=17.33 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=20.3
Q ss_pred ceeEEEEEEcCHHHHHHHHHhhCCc
Q 045845 30 SHGFGFLSLDRDEDADAAIRTLDET 54 (69)
Q Consensus 30 ~~g~~fv~~~~~~~a~~ai~~l~~~ 54 (69)
-.||-||.+...++...+++...|.
T Consensus 42 fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 42 VKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred CCcEEEEEEEchHHHHHHHhCCCCE
Confidence 5799999999888887888777664
No 232
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=43.92 E-value=7.1 Score=19.71 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=14.3
Q ss_pred HHHHHHhhccCceEEeeeCCCCCceeEEEEEEc
Q 045845 7 RDRESKTYQLLRLSLLSKSLNRDSHGFGFLSLD 39 (69)
Q Consensus 7 ~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~~~ 39 (69)
+|+..++...|.|+.... .+||+||...
T Consensus 2 ~~~~~l~~~~G~Vkwfn~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET-----TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC-----CCCeeEEeeC
Confidence 344455666666632222 3589999865
No 233
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=42.50 E-value=21 Score=19.12 Aligned_cols=25 Identities=4% Similarity=0.060 Sum_probs=21.9
Q ss_pred ceeEEEEEEcCHHHHHHHHHhhCCc
Q 045845 30 SHGFGFLSLDRDEDADAAIRTLDET 54 (69)
Q Consensus 30 ~~g~~fv~~~~~~~a~~ai~~l~~~ 54 (69)
-+||-||+-.+......|+..+.+.
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~v 172 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDI 172 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhh
Confidence 5799999999999999999888765
No 234
>3da5_A Argonaute; PAZ domain, RNA binding, SH3-like barrel, RNA binding protein; 1.94A {Thermococcus thioreducens}
Probab=39.82 E-value=21 Score=17.16 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=15.8
Q ss_pred HHHhhccCce-----EEeeeCCCCCceeEE
Q 045845 10 ESKTYQLLRL-----SLLSKSLNRDSHGFG 34 (69)
Q Consensus 10 ~~~f~~~g~i-----~~~~~~~~~~~~g~~ 34 (69)
.+++.+||++ .++..+.+.+.+|+-
T Consensus 86 ~efy~kfg~vdl~qp~ilak~~~~~n~~~~ 115 (128)
T 3da5_A 86 KEFYKKFGPVDLNQPIILAKPLRQHNRGDL 115 (128)
T ss_dssp HHHHHHHCSCCTTCCEEEEEESSCCTTCSC
T ss_pred HHHHHHcCCcccCcchHhhhHHHhhCCCCe
Confidence 3456689988 555555666666643
No 235
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=35.93 E-value=28 Score=15.77 Aligned_cols=16 Identities=0% Similarity=-0.207 Sum_probs=12.7
Q ss_pred CCHHHHHHHhhccCce
Q 045845 4 KASRDRESKTYQLLRL 19 (69)
Q Consensus 4 ~~~~~l~~~f~~~g~i 19 (69)
++.++|.+.|.-||--
T Consensus 3 vs~e~l~~el~~Fgi~ 18 (78)
T 4e2i_2 3 ASAQQLAEELQIFGLD 18 (78)
T ss_dssp CCHHHHHHHHHHTTCC
T ss_pred cCHHHHHHHHHHcCCC
Confidence 7888888888888743
No 236
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=32.50 E-value=18 Score=15.83 Aligned_cols=11 Identities=27% Similarity=0.866 Sum_probs=8.3
Q ss_pred ceeEEEEEEcC
Q 045845 30 SHGFGFLSLDR 40 (69)
Q Consensus 30 ~~g~~fv~~~~ 40 (69)
.+||+||.-.+
T Consensus 12 ~kGfGFI~~~~ 22 (73)
T 3a0j_A 12 EKGYGFIEREG 22 (73)
T ss_dssp TTTEEEEECTT
T ss_pred CCCEEEEecCC
Confidence 46899998654
No 237
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=32.16 E-value=25 Score=15.52 Aligned_cols=11 Identities=36% Similarity=0.915 Sum_probs=8.4
Q ss_pred ceeEEEEEEcC
Q 045845 30 SHGFGFLSLDR 40 (69)
Q Consensus 30 ~~g~~fv~~~~ 40 (69)
.+||+||.-.+
T Consensus 13 ~KGfGFI~~~d 23 (74)
T 2k5n_A 13 DKGFGFIKDEN 23 (74)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEEecCC
Confidence 46899998754
No 238
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=31.71 E-value=28 Score=13.23 Aligned_cols=14 Identities=0% Similarity=-0.135 Sum_probs=10.0
Q ss_pred cCCHHHHHHHhhcc
Q 045845 3 GKASRDRESKTYQL 16 (69)
Q Consensus 3 ~~~~~~l~~~f~~~ 16 (69)
.++.++|+.+|.+.
T Consensus 21 d~t~~eLk~il~~m 34 (37)
T 1ik9_C 21 DTDLNQLKEVFSGI 34 (37)
T ss_dssp CCCHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHc
Confidence 35677888888764
No 239
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=31.59 E-value=19 Score=16.05 Aligned_cols=11 Identities=27% Similarity=0.899 Sum_probs=8.5
Q ss_pred ceeEEEEEEcC
Q 045845 30 SHGFGFLSLDR 40 (69)
Q Consensus 30 ~~g~~fv~~~~ 40 (69)
.+||+||.-.+
T Consensus 19 ~kGfGFI~~~~ 29 (79)
T 1h95_A 19 RNGYGFINRND 29 (79)
T ss_dssp TTTEEEEEEGG
T ss_pred CCCcEEEecCC
Confidence 46999999754
No 240
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=31.57 E-value=19 Score=15.36 Aligned_cols=11 Identities=36% Similarity=1.008 Sum_probs=8.5
Q ss_pred ceeEEEEEEcC
Q 045845 30 SHGFGFLSLDR 40 (69)
Q Consensus 30 ~~g~~fv~~~~ 40 (69)
.+||+||.-.+
T Consensus 11 ~kGfGFI~~~~ 21 (66)
T 1g6p_A 11 KKGYGFITKDE 21 (66)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEecCC
Confidence 46899999764
No 241
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=30.97 E-value=27 Score=15.42 Aligned_cols=11 Identities=27% Similarity=0.676 Sum_probs=8.5
Q ss_pred ceeEEEEEEcC
Q 045845 30 SHGFGFLSLDR 40 (69)
Q Consensus 30 ~~g~~fv~~~~ 40 (69)
.+||+||.-.+
T Consensus 11 ~KGfGFI~~~d 21 (74)
T 2kcm_A 11 AKKYGFIQGDD 21 (74)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEecCC
Confidence 46899998754
No 242
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=30.69 E-value=28 Score=14.82 Aligned_cols=11 Identities=27% Similarity=0.987 Sum_probs=8.2
Q ss_pred ceeEEEEEEcC
Q 045845 30 SHGFGFLSLDR 40 (69)
Q Consensus 30 ~~g~~fv~~~~ 40 (69)
.+||+||.-.+
T Consensus 12 ~kGfGFI~~~~ 22 (66)
T 1c9o_A 12 EKGYGFIEVEG 22 (66)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEecCC
Confidence 36899998754
No 243
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=30.36 E-value=28 Score=14.91 Aligned_cols=11 Identities=45% Similarity=1.090 Sum_probs=8.5
Q ss_pred ceeEEEEEEcC
Q 045845 30 SHGFGFLSLDR 40 (69)
Q Consensus 30 ~~g~~fv~~~~ 40 (69)
.+||+||.-.+
T Consensus 12 ~kGfGFI~~~~ 22 (67)
T 3cam_A 12 AKGFGFITPDE 22 (67)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEecCC
Confidence 46899998754
No 244
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=29.73 E-value=50 Score=15.52 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=22.9
Q ss_pred eEEEEEEcCHHHHHHHHHhhCCc-------eeCCeEEEE
Q 045845 32 GFGFLSLDRDEDADAAIRTLDET-------EWNGRIIHV 63 (69)
Q Consensus 32 g~~fv~~~~~~~a~~ai~~l~~~-------~~~~~~i~v 63 (69)
|.+.+.|.+.++...|+..|-.+ ++.|..+.|
T Consensus 47 gqamirfqnsdeqrlaiqkllnhnnnklqieirgqicdv 85 (129)
T 4eyt_A 47 GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICDV 85 (129)
T ss_dssp SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEEE
T ss_pred CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeeee
Confidence 56899999999999898866332 455655544
No 245
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=29.50 E-value=31 Score=15.30 Aligned_cols=16 Identities=13% Similarity=-0.012 Sum_probs=11.6
Q ss_pred cCCHHHHHHHhhccCc
Q 045845 3 GKASRDRESKTYQLLR 18 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~ 18 (69)
+.++++|...|.+.|.
T Consensus 46 GLt~eEI~~Al~ra~~ 61 (70)
T 2w84_A 46 GLTDEEIDMAFQQSGT 61 (70)
T ss_dssp TCCHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHccC
Confidence 5678888888877553
No 246
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=29.35 E-value=53 Score=15.63 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=21.4
Q ss_pred cCCHHHHHHHhhc-cCc----e---EEeeeCCCCCceeEEEEEEcCHHHHH
Q 045845 3 GKASRDRESKTYQ-LLR----L---SLLSKSLNRDSHGFGFLSLDRDEDAD 45 (69)
Q Consensus 3 ~~~~~~l~~~f~~-~g~----i---~~~~~~~~~~~~g~~fv~~~~~~~a~ 45 (69)
+++..++++.+.+ |+. | .+...-..|++.|||.| |.+.+.+.
T Consensus 29 tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~ak 78 (102)
T 1ywx_A 29 TPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMA 78 (102)
T ss_dssp CCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 3566777776664 331 2 33333344556666644 44555443
No 247
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=28.91 E-value=53 Score=15.55 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=21.0
Q ss_pred cCCHHHHHHHhhc-cCc----e---EEeeeCCCCCceeEEEEEEcCHHHHH
Q 045845 3 GKASRDRESKTYQ-LLR----L---SLLSKSLNRDSHGFGFLSLDRDEDAD 45 (69)
Q Consensus 3 ~~~~~~l~~~f~~-~g~----i---~~~~~~~~~~~~g~~fv~~~~~~~a~ 45 (69)
+++..++++.+.+ |+. | .+...-..|++.|||.| |.+.+.+.
T Consensus 29 tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~ak 78 (101)
T 1xn9_A 29 TPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMK 78 (101)
T ss_dssp CCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHH
Confidence 4566777776664 332 1 33333334555666644 44444443
No 248
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=28.78 E-value=23 Score=16.40 Aligned_cols=8 Identities=63% Similarity=1.277 Sum_probs=6.6
Q ss_pred ceeEEEEE
Q 045845 30 SHGFGFLS 37 (69)
Q Consensus 30 ~~g~~fv~ 37 (69)
.+||+||.
T Consensus 19 ~KGfGFI~ 26 (90)
T 3ulj_A 19 RMGFGFIS 26 (90)
T ss_dssp TTTEEEEE
T ss_pred CCCeEEeE
Confidence 57999996
No 249
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=28.08 E-value=33 Score=14.89 Aligned_cols=11 Identities=45% Similarity=1.041 Sum_probs=8.4
Q ss_pred ceeEEEEEEcC
Q 045845 30 SHGFGFLSLDR 40 (69)
Q Consensus 30 ~~g~~fv~~~~ 40 (69)
.+||+||.-.+
T Consensus 16 ~kGfGFI~~~~ 26 (71)
T 3i2z_B 16 SKGFGFITPED 26 (71)
T ss_dssp TTTEEEEEETT
T ss_pred CCCcEEEecCC
Confidence 36899998764
No 250
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=27.82 E-value=28 Score=12.05 Aligned_cols=12 Identities=0% Similarity=0.027 Sum_probs=8.5
Q ss_pred CHHHHHHHhhcc
Q 045845 5 ASRDRESKTYQL 16 (69)
Q Consensus 5 ~~~~l~~~f~~~ 16 (69)
++.+|+++.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 467787777765
No 251
>1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C
Probab=27.72 E-value=42 Score=14.00 Aligned_cols=16 Identities=0% Similarity=-0.159 Sum_probs=12.5
Q ss_pred cCCHHHHHHHhhccCc
Q 045845 3 GKASRDRESKTYQLLR 18 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~ 18 (69)
..++++|++.+..||.
T Consensus 5 ~Lsd~eLr~~L~~~G~ 20 (53)
T 1jei_A 5 DLSDTELTTLLRRYNI 20 (53)
T ss_dssp TCCHHHHHHHHSSSCC
T ss_pred HcCHHHHHHHHHHhCC
Confidence 4578889998888874
No 252
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=27.11 E-value=28 Score=16.19 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=8.4
Q ss_pred ceeEEEEEEcC
Q 045845 30 SHGFGFLSLDR 40 (69)
Q Consensus 30 ~~g~~fv~~~~ 40 (69)
.+||+||.-.+
T Consensus 27 ~KGfGFI~~dd 37 (97)
T 2ytx_A 27 KEAFGFIERGD 37 (97)
T ss_dssp CSSEEEEECSS
T ss_pred eCCceEEecCC
Confidence 46999998654
No 253
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=27.01 E-value=29 Score=15.87 Aligned_cols=10 Identities=30% Similarity=0.770 Sum_probs=7.9
Q ss_pred eeEEEEEEcC
Q 045845 31 HGFGFLSLDR 40 (69)
Q Consensus 31 ~g~~fv~~~~ 40 (69)
+||+||.-.+
T Consensus 28 kGfGFI~~dd 37 (88)
T 2yty_A 28 DNFGFIETAN 37 (88)
T ss_dssp SSEEEEECSS
T ss_pred CCccEEecCC
Confidence 5999998754
No 254
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=25.64 E-value=35 Score=15.22 Aligned_cols=15 Identities=7% Similarity=-0.084 Sum_probs=11.6
Q ss_pred CHHHHHHHhhccCce
Q 045845 5 ASRDRESKTYQLLRL 19 (69)
Q Consensus 5 ~~~~l~~~f~~~g~i 19 (69)
|--|++.++.+||.+
T Consensus 4 tlYDVqQLLK~fG~~ 18 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHI 18 (72)
T ss_dssp SHHHHHHHHHTTTCC
T ss_pred cHHHHHHHHHHCCEE
Confidence 345788889999876
No 255
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=31.36 E-value=15 Score=17.49 Aligned_cols=23 Identities=17% Similarity=0.370 Sum_probs=17.8
Q ss_pred eeEEEEEEcCHHHHHHHHHhhCC
Q 045845 31 HGFGFLSLDRDEDADAAIRTLDE 53 (69)
Q Consensus 31 ~g~~fv~~~~~~~a~~ai~~l~~ 53 (69)
.|.+.+.|.+.++...|+..|-.
T Consensus 77 egqamirfqnsdeqrlaiqklln 99 (137)
T 2lsl_A 77 EGQAMIRFQNSDEQRLAIQKLLN 99 (137)
Confidence 47889999988888888876533
No 256
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=24.88 E-value=44 Score=15.27 Aligned_cols=10 Identities=20% Similarity=0.707 Sum_probs=8.1
Q ss_pred eeEEEEEEcC
Q 045845 31 HGFGFLSLDR 40 (69)
Q Consensus 31 ~g~~fv~~~~ 40 (69)
+||+||.-.+
T Consensus 28 KGfGFI~~dd 37 (89)
T 1wfq_A 28 TSYGFIQCSE 37 (89)
T ss_dssp SSEEEEEETT
T ss_pred CCeeEEecCC
Confidence 6999998754
No 257
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=24.13 E-value=70 Score=15.32 Aligned_cols=42 Identities=14% Similarity=0.013 Sum_probs=21.3
Q ss_pred cCCHHHHHHHhhc-cCc----e---EEeeeCCCCCceeEEEEEEcCHHHHH
Q 045845 3 GKASRDRESKTYQ-LLR----L---SLLSKSLNRDSHGFGFLSLDRDEDAD 45 (69)
Q Consensus 3 ~~~~~~l~~~f~~-~g~----i---~~~~~~~~~~~~g~~fv~~~~~~~a~ 45 (69)
+++..++++-+.+ |+. | .+...-..|++.|||.| |.+.+.|.
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~ak 87 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRML 87 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHH
Confidence 3466677666654 332 1 33333334556666654 44555444
No 258
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=23.89 E-value=39 Score=17.15 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=8.6
Q ss_pred ceeEEEEEEcC
Q 045845 30 SHGFGFLSLDR 40 (69)
Q Consensus 30 ~~g~~fv~~~~ 40 (69)
.+||+||.-.+
T Consensus 73 ~KGfGFI~~dd 83 (147)
T 3aqq_A 73 SKGHGFITPAD 83 (147)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEeccCC
Confidence 36999998764
No 259
>3g4p_A Beta-lactamase OXA-24; B-lactamases, enzyme mechanism, carbapenem, resistance, HYDR; HET: KCX; 1.97A {Acinetobacter baumannii} PDB: 2jc7_A* 3fyz_A* 3fzc_A* 3fv7_A* 3mbz_A* 3pae_A* 3pag_A*
Probab=23.60 E-value=44 Score=18.20 Aligned_cols=25 Identities=8% Similarity=0.011 Sum_probs=17.9
Q ss_pred HHHHHHHhhccCce--EEeeeCCCCCc
Q 045845 6 SRDRESKTYQLLRL--SLLSKSLNRDS 30 (69)
Q Consensus 6 ~~~l~~~f~~~g~i--~~~~~~~~~~~ 30 (69)
++++.++|...+.- .++.|+.||.-
T Consensus 8 ~~~~~~~f~~~~~~Ga~Vv~d~~tG~i 34 (244)
T 3g4p_A 8 EKAIKSYFDEAQTQGVIIIKEGKNLST 34 (244)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETTEEEE
T ss_pred HHHHHHHHhhcCCeEEEEEEECCCCCE
Confidence 36799999877644 67778777653
No 260
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=23.47 E-value=31 Score=15.38 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=8.1
Q ss_pred eeEEEEEEcC
Q 045845 31 HGFGFLSLDR 40 (69)
Q Consensus 31 ~g~~fv~~~~ 40 (69)
+||+||.-.+
T Consensus 18 KGfGFI~~dd 27 (79)
T 2ytv_A 18 DQFGFINYEV 27 (79)
T ss_dssp SSEEEESCCC
T ss_pred ccceeEeCCC
Confidence 6999998764
No 261
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=28.14 E-value=18 Score=15.67 Aligned_cols=11 Identities=36% Similarity=0.893 Sum_probs=8.6
Q ss_pred ceeEEEEEEcC
Q 045845 30 SHGFGFLSLDR 40 (69)
Q Consensus 30 ~~g~~fv~~~~ 40 (69)
.+||+||.-.+
T Consensus 15 ~kGfGFI~~~~ 25 (70)
T 2lss_A 15 TKNFGFIEQDN 25 (70)
Confidence 47999998754
No 262
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=22.46 E-value=84 Score=17.10 Aligned_cols=20 Identities=25% Similarity=0.203 Sum_probs=16.1
Q ss_pred CHHHHHHHhhccCce-EEeee
Q 045845 5 ASRDRESKTYQLLRL-SLLSK 24 (69)
Q Consensus 5 ~~~~l~~~f~~~g~i-~~~~~ 24 (69)
++++++++++.||.+ .++.+
T Consensus 65 ~~~~v~~~~~~~g~iDiLVNN 85 (242)
T 4b79_A 65 DSQRLQRLFEALPRLDVLVNN 85 (242)
T ss_dssp CHHHHHHHHHHCSCCSEEEEC
T ss_pred CHHHHHHHHHhcCCCCEEEEC
Confidence 457899999999999 66554
No 263
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=27.97 E-value=18 Score=17.19 Aligned_cols=21 Identities=24% Similarity=0.158 Sum_probs=15.8
Q ss_pred EEEEcCHHHHHHHHHhhCCce
Q 045845 35 FLSLDRDEDADAAIRTLDETE 55 (69)
Q Consensus 35 fv~~~~~~~a~~ai~~l~~~~ 55 (69)
+-.|++.++|..|+..|....
T Consensus 68 yG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 68 SGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 446778889999998887543
No 264
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=21.45 E-value=60 Score=13.58 Aligned_cols=15 Identities=0% Similarity=-0.237 Sum_probs=10.9
Q ss_pred cCCHHHHHHHhhccC
Q 045845 3 GKASRDRESKTYQLL 17 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g 17 (69)
++++++|+++++.-|
T Consensus 16 ~~t~~~I~~il~aaG 30 (58)
T 3a1y_A 16 EINEENLKAVLQAAG 30 (58)
T ss_dssp CCCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHcC
Confidence 467778888877665
No 265
>2bu3_A ALR0975 protein; phytochelatin synthase, PCS, acyl-enzyme intermedia nostoc, glutathione metabolism, cysteine protease, transfer; HET: 3GC; 1.4A {Anabaena SP} SCOP: d.3.1.14 PDB: 2btw_A* 2btw_B
Probab=21.41 E-value=49 Score=18.44 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=12.3
Q ss_pred eeCCCCCceeEEEEEE
Q 045845 23 SKSLNRDSHGFGFLSL 38 (69)
Q Consensus 23 ~~~~~~~~~g~~fv~~ 38 (69)
.|+.+|++|||-.+.-
T Consensus 235 ~D~~s~~~RG~~li~~ 250 (254)
T 2bu3_A 235 VDSVSQKTRGFVFVSK 250 (254)
T ss_dssp EETTTTEECEEEEEEC
T ss_pred ccccCCCcceEEEEec
Confidence 4778889998877764
No 266
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=20.85 E-value=28 Score=15.98 Aligned_cols=10 Identities=40% Similarity=0.859 Sum_probs=8.2
Q ss_pred eeEEEEEEcC
Q 045845 31 HGFGFLSLDR 40 (69)
Q Consensus 31 ~g~~fv~~~~ 40 (69)
+||+||.-.+
T Consensus 18 KGfGFI~~~~ 27 (89)
T 1x65_A 18 DGFGFIKCVD 27 (89)
T ss_dssp TTBCEEEESS
T ss_pred CCcceeecCC
Confidence 6999999754
No 267
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=20.68 E-value=79 Score=14.62 Aligned_cols=48 Identities=6% Similarity=-0.247 Sum_probs=30.1
Q ss_pred cCCHHHHHHHhhccCce----------E-EeeeCCCCCceeEEEEEEcCHHHHHHHHHhhCCc
Q 045845 3 GKASRDRESKTYQLLRL----------S-LLSKSLNRDSHGFGFLSLDRDEDADAAIRTLDET 54 (69)
Q Consensus 3 ~~~~~~l~~~f~~~g~i----------~-~~~~~~~~~~~g~~fv~~~~~~~a~~ai~~l~~~ 54 (69)
.+..+.+..+..+-|.. . +-.+.. .|..++.=.+.+.+++|...++..
T Consensus 20 ~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ed----dG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 20 VVREDLMGLAIGTHGSNIQQARKVPGVTAIELDED----TGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp ECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETT----TTEEEEEESSHHHHHHHHHHHSCC
T ss_pred EEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcC----CCEEEEEECCHHHHHHHHHHHHhh
Confidence 45566666666666644 2 222211 255666666888999999877764
No 268
>3uip_D E3 SUMO-protein ligase ranbp2; UBC9, nuclear pore complex, ligase isomerase-protein binding complex; HET: CME; 2.29A {Homo sapiens} PDB: 3uio_D* 3uin_D
Probab=20.18 E-value=26 Score=15.39 Aligned_cols=18 Identities=28% Similarity=0.584 Sum_probs=13.8
Q ss_pred cCHHHHHHHHHhhCCcee
Q 045845 39 DRDEDADAAIRTLDETEW 56 (69)
Q Consensus 39 ~~~~~a~~ai~~l~~~~~ 56 (69)
.+.++.+.+++.|||.-+
T Consensus 44 ~~~edfetavrklng~ly 61 (67)
T 3uip_D 44 EDDEDFETAVKKLNGKLY 61 (67)
T ss_dssp CCCCCHHHHHHTTTTCCC
T ss_pred cchHHHHHHHHHhCCcee
Confidence 356778899999998743
Done!