BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045847
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G91|C Chain C, Ccaat-Binding Complex From Aspergillus Nidulans
pdb|4G92|C Chain C, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
Length = 119
Score = 117 bits (292), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 75/104 (72%), Gaps = 1/104 (0%)
Query: 62 RQLVQSFWEQQKSDIENATTESLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEM 121
R ++ ++W+ + +E + + H LPLARIKKVMK+ EVKM +A++P +FAK C++
Sbjct: 16 RDILTTYWQHVINHLE-SDNHDYKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDV 74
Query: 122 FIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLIDFVP 165
FI ELT+RAW+ ED KRRTLQR DIA AL ++FDFLID VP
Sbjct: 75 FITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLIDIVP 118
>pdb|1N1J|B Chain B, Crystal Structure Of The Nf-YbNF-Yc Histone Pair
Length = 97
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 68/91 (74%)
Query: 75 DIENATTESLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQT 134
+I N T + R LPLARIKK+MK E+VKM +A++P +FAKA ++FI ELTLRAW+ T
Sbjct: 6 EIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHT 65
Query: 135 EDGKRRTLQRCDIARALRLDELFDFLIDFVP 165
ED KRRTLQR DIA A+ + FDFLID VP
Sbjct: 66 EDNKRRTLQRNDIAMAITKFDQFDFLIDIVP 96
>pdb|4AWL|C Chain C, The Nf-y Transcription Factor Is Structurally And
Functionally A Sequence Specific Histone
Length = 94
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 68/91 (74%)
Query: 75 DIENATTESLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQT 134
+I N T + R LPLARIKK+MK E+VKM +A++P +FAKA ++FI ELTLRAW+ T
Sbjct: 3 EIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHT 62
Query: 135 EDGKRRTLQRCDIARALRLDELFDFLIDFVP 165
ED KRRTLQR DIA A+ + FDFLID VP
Sbjct: 63 EDNKRRTLQRNDIAMAITKFDQFDFLIDIVP 93
>pdb|1JFI|A Chain A, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex
Length = 98
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%)
Query: 86 NHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRC 145
N P ARIKK+M++ EE+ A P + ++A E+F+ L +A T+ +T+
Sbjct: 9 NARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTS 68
Query: 146 DIARALRLD 154
+ + + L+
Sbjct: 69 HLKQCIELE 77
>pdb|2BYK|A Chain A, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYK|C Chain C, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYM|A Chain A, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYM|C Chain C, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
Length = 140
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 88 LLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKR--RTLQRC 145
LPL+R++ +MKS + + T + + K E+F+ L A+ + E G+R L+
Sbjct: 19 FLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTE-EFGQRPGEALKYE 77
Query: 146 DIARALRLDELFDFLIDFVPYDCR 169
+++ + ++ +FL+ VP R
Sbjct: 78 HLSQVVNKNKNLEFLLQIVPQKIR 101
>pdb|1FVJ|A Chain A, The 2.06 Angstrom Structure Of The H32y Mutant Of The
Disulfide Bond Formation Protein (Dsba)
pdb|1FVJ|B Chain B, The 2.06 Angstrom Structure Of The H32y Mutant Of The
Disulfide Bond Formation Protein (Dsba)
Length = 189
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 133 QTEDGKRRTLQRCDIARALRLDELFDFLIDFVPYDCRQDDEAVEIRPANKQHFP-GVHVS 191
Q EDGK+ T +A A ++ E F F F PY C Q +E + I K+ P GV ++
Sbjct: 2 QYEDGKQYTTLEKPVAGAPQVLEFFSF---FCPY-CYQFEEVLHISDNVKKKLPEGVKMT 57
Query: 192 ---ANFM 195
NFM
Sbjct: 58 KYHVNFM 64
>pdb|3DKS|A Chain A, Dsba Substrate Complex
pdb|3DKS|B Chain B, Dsba Substrate Complex
pdb|3DKS|C Chain C, Dsba Substrate Complex
pdb|3DKS|D Chain D, Dsba Substrate Complex
Length = 189
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 133 QTEDGKRRTLQRCDIARALRLDELFDFLIDFVPYDCRQDDEAVEIRPANKQHFP-GVHVS 191
Q EDGK+ T +A A ++ E F F F P+ C Q +E + I K+ P GV ++
Sbjct: 2 QYEDGKQYTTLEKPVAGAPQVLEFFSF---FCPH-CYQFEEVLHISDNVKKKLPEGVKMT 57
Query: 192 ---ANFM 195
NFM
Sbjct: 58 KYHVNFM 64
>pdb|1UN2|A Chain A, Crystal Structure Of Circularly Permuted Cpdsba_q100t99
Preserved Global Fold And Local Structural Adjustments
Length = 197
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 133 QTEDGKRRTLQRCDIARALRLDELFDFLIDFVPYDCRQDDEAVEIRPANKQHFP-GVHVS 191
Q EDGK+ T +A A ++ E F F F P+ C Q +E + I K+ P GV ++
Sbjct: 97 QYEDGKQYTTLEKPVAGAPQVLEFFSF---FCPH-CYQFEEVLHISDNVKKKLPEGVKMT 152
Query: 192 ---ANFM 195
NFM
Sbjct: 153 KYHVNFM 159
>pdb|1DSB|A Chain A, Crystal Structure Of The Dsba Protein Required For
Disulphide Bond Formation In Vivo
pdb|1DSB|B Chain B, Crystal Structure Of The Dsba Protein Required For
Disulphide Bond Formation In Vivo
pdb|1FVK|A Chain A, The 1.7 Angstrom Structure Of Wild Type Disulfide Bond
Formation Protein (Dsba)
pdb|1FVK|B Chain B, The 1.7 Angstrom Structure Of Wild Type Disulfide Bond
Formation Protein (Dsba)
pdb|1A2L|A Chain A, Reduced Dsba At 2.7 Angstroms Resolution
pdb|1A2L|B Chain B, Reduced Dsba At 2.7 Angstroms Resolution
pdb|1A2M|A Chain A, Oxidized Dsba At 2.7 Angstroms Resolution, Crystal Form
Iii
pdb|1A2M|B Chain B, Oxidized Dsba At 2.7 Angstroms Resolution, Crystal Form
Iii
pdb|1A23|A Chain A, Solution Nmr Structure Of Reduced Dsba From Escherichia
Coli, Minimized Average Structure
pdb|1A24|A Chain A, Solution Nmr Structure Of Reduced Dsba From Escherichia
Coli, Family Of 20 Structures
pdb|1A2J|A Chain A, Oxidized Dsba Crystal Form Ii
Length = 189
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 133 QTEDGKRRTLQRCDIARALRLDELFDFLIDFVPYDCRQDDEAVEIRPANKQHFP-GVHVS 191
Q EDGK+ T +A A ++ E F F F P+ C Q +E + I K+ P GV ++
Sbjct: 2 QYEDGKQYTTLEKPVAGAPQVLEFFSF---FCPH-CYQFEEVLHISDNVKKKLPEGVKMT 57
Query: 192 ---ANFM 195
NFM
Sbjct: 58 KYHVNFM 64
>pdb|1BQ7|A Chain A, Dsba Mutant P151a, Role Of The Cis-Proline In The Active
Site Of Dsba
pdb|1BQ7|B Chain B, Dsba Mutant P151a, Role Of The Cis-Proline In The Active
Site Of Dsba
pdb|1BQ7|C Chain C, Dsba Mutant P151a, Role Of The Cis-Proline In The Active
Site Of Dsba
pdb|1BQ7|D Chain D, Dsba Mutant P151a, Role Of The Cis-Proline In The Active
Site Of Dsba
pdb|1BQ7|E Chain E, Dsba Mutant P151a, Role Of The Cis-Proline In The Active
Site Of Dsba
pdb|1BQ7|F Chain F, Dsba Mutant P151a, Role Of The Cis-Proline In The Active
Site Of Dsba
Length = 189
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 133 QTEDGKRRTLQRCDIARALRLDELFDFLIDFVPYDCRQDDEAVEIRPANKQHFP-GVHVS 191
Q EDGK+ T +A A ++ E F F F P+ C Q +E + I K+ P GV ++
Sbjct: 2 QYEDGKQYTTLEKPVAGAPQVLEFFSF---FCPH-CYQFEEVLHISDNVKKKLPEGVKMT 57
Query: 192 ---ANFM 195
NFM
Sbjct: 58 KYHVNFM 64
>pdb|3A9R|A Chain A, X-Ray Structures Of Bacillus Pallidus D-Arabinose
Isomerasecomplex With (4r)-2-Methylpentane-2,4-Diol
pdb|3A9R|B Chain B, X-Ray Structures Of Bacillus Pallidus D-Arabinose
Isomerasecomplex With (4r)-2-Methylpentane-2,4-Diol
pdb|3A9R|C Chain C, X-Ray Structures Of Bacillus Pallidus D-Arabinose
Isomerasecomplex With (4r)-2-Methylpentane-2,4-Diol
pdb|3A9S|A Chain A, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With Glycerol
pdb|3A9S|B Chain B, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With Glycerol
pdb|3A9S|C Chain C, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With Glycerol
pdb|3A9T|A Chain A, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With L-Fucitol
pdb|3A9T|B Chain B, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With L-Fucitol
pdb|3A9T|C Chain C, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With L-Fucitol
Length = 595
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 167 DCRQDDEAVEIRPANKQHFPGVHVSANFMTPG 198
D ++ EA + RPA+ ++F G S +F+T G
Sbjct: 427 DIKKCLEATQFRPASTEYFRGGGYSTDFLTKG 458
>pdb|4A3U|A Chain A, X-Structure Of The Old Yellow Enzyme Homologue From
Zymomonas Mobilis (Ncr)
pdb|4A3U|B Chain B, X-Structure Of The Old Yellow Enzyme Homologue From
Zymomonas Mobilis (Ncr)
Length = 358
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 14/60 (23%)
Query: 133 QTEDGKRRTLQRCDIARALRLDELFDFLIDFVPYDCRQDDEAVEIRPANKQHFPGVHVSA 192
T DGK+ D+ARALRLDE+ L DD R A K F GV + A
Sbjct: 128 HTYDGKKP----YDVARALRLDEIPRLL----------DDYEKAARHALKAGFDGVQIHA 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,370,676
Number of Sequences: 62578
Number of extensions: 230634
Number of successful extensions: 626
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 618
Number of HSP's gapped (non-prelim): 16
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)