BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045847
(237 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LCG7|NFYC2_ARATH Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana
GN=NFYC2 PE=2 SV=2
Length = 199
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 80/103 (77%), Gaps = 2/103 (1%)
Query: 65 VQSFWEQQKSDIENATTESLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIM 124
+Q FW Q +IE+ T +NH LPLARIKK+MK+ E+V+M +A++P +FAKACEMFI+
Sbjct: 55 LQMFWANQMQEIEHTT--DFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFIL 112
Query: 125 ELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLIDFVPYD 167
ELTLRAW+ TE+ KRRTLQ+ DIA A+ ++FDFL+D +P D
Sbjct: 113 ELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRD 155
>sp|Q9ZVL3|NFYC3_ARATH Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana
GN=NFYC3 PE=2 SV=1
Length = 217
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 93/139 (66%), Gaps = 7/139 (5%)
Query: 67 SFWEQQKSDIENATTESLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMEL 126
SFWE Q +IE T +NH LPLARIKK+MK+ E+V+M +A++P VFA+ACEMFI+EL
Sbjct: 51 SFWETQFKEIEKTT--DFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILEL 108
Query: 127 TLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLIDFVPYDCRQDD--EAVEIRPANKQH 184
TLR+W TE+ KRRTLQ+ DIA A+ ++FDFL+D VP + +D+ V A
Sbjct: 109 TLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGGVGAEAATAAG 168
Query: 185 FPGVHV---SANFMTPGMI 200
+P ++ +A PGM+
Sbjct: 169 YPYGYLPPGTAPIGNPGMV 187
>sp|Q9SMP0|NFYC1_ARATH Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana
GN=NFYC1 PE=1 SV=1
Length = 234
Score = 128 bits (322), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 81/108 (75%), Gaps = 2/108 (1%)
Query: 68 FWEQQKSDIENATTESLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELT 127
FW Q+ +IE +NH LPLARIKK+MK+ E+V+M +A++P +FAKACE+FI+ELT
Sbjct: 47 FWTYQRQEIEQ--VNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELT 104
Query: 128 LRAWLQTEDGKRRTLQRCDIARALRLDELFDFLIDFVPYDCRQDDEAV 175
+R+WL E+ KRRTLQ+ DIA A+ ++FDFL+D VP D +D+ AV
Sbjct: 105 IRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAV 152
>sp|Q8L4B2|NFYC9_ARATH Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana
GN=NFYC9 PE=2 SV=1
Length = 231
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 90/130 (69%), Gaps = 2/130 (1%)
Query: 43 QPTEEDEEEAHSLALMLKQRQLVQSFWEQQKSDIENATTESLRNHLLPLARIKKVMKSRE 102
QP + + H + Q +Q+FWE Q +IE T +NH LPLARIKK+MK+ E
Sbjct: 37 QPGQLAFHQIHQQQQQQQLAQQLQAFWENQFKEIEKTT--DFKNHSLPLARIKKIMKADE 94
Query: 103 EVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLID 162
+V+M +A++P VFA+ACEMFI+ELTLR+W TE+ KRRTLQ+ DIA A+ ++FDFL+D
Sbjct: 95 DVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVD 154
Query: 163 FVPYDCRQDD 172
VP + +D+
Sbjct: 155 IVPREDLRDE 164
>sp|Q5RA23|NFYC_PONAB Nuclear transcription factor Y subunit gamma OS=Pongo abelii
GN=NFYC PE=2 SV=1
Length = 335
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 84/124 (67%), Gaps = 5/124 (4%)
Query: 62 RQLVQSFWEQQKSDIENATTESLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEM 121
+Q +QSFW + +I N T + R LPLARIKK+MK E+VKM +A++P +FAKA ++
Sbjct: 16 QQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQI 75
Query: 122 FIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLIDFVPYD-----CRQDDEAVE 176
FI ELTLRAW+ TED KRRTLQR DIA A+ + FDFLID VP D RQ+D
Sbjct: 76 FITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEDVRQS 135
Query: 177 IRPA 180
+ PA
Sbjct: 136 VTPA 139
>sp|Q5E9X1|NFYC_BOVIN Nuclear transcription factor Y subunit gamma OS=Bos taurus GN=NFYC
PE=2 SV=1
Length = 335
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 83/123 (67%), Gaps = 8/123 (6%)
Query: 62 RQLVQSFWEQQKSDIENATTESLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEM 121
+Q +QSFW + +I N T + R LPLARIKK+MK E+VKM +A++P +FAKA ++
Sbjct: 16 QQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQI 75
Query: 122 FIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLIDFVPYDCRQDDEAVEIRPAN 181
FI ELTLRAW+ TED KRRTLQR DIA A+ + FDFLID VP D E++P
Sbjct: 76 FITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRD--------ELKPPK 127
Query: 182 KQH 184
+Q
Sbjct: 128 RQE 130
>sp|P70353|NFYC_MOUSE Nuclear transcription factor Y subunit gamma OS=Mus musculus
GN=Nfyc PE=2 SV=2
Length = 335
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 83/123 (67%), Gaps = 8/123 (6%)
Query: 62 RQLVQSFWEQQKSDIENATTESLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEM 121
+Q +QSFW + +I N T + R LPLARIKK+MK E+VKM +A++P +FAKA ++
Sbjct: 16 QQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQI 75
Query: 122 FIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLIDFVPYDCRQDDEAVEIRPAN 181
FI ELTLRAW+ TED KRRTLQR DIA A+ + FDFLID VP D E++P
Sbjct: 76 FITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRD--------ELKPPK 127
Query: 182 KQH 184
+Q
Sbjct: 128 RQE 130
>sp|Q62725|NFYC_RAT Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus
GN=Nfyc PE=2 SV=1
Length = 335
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 83/123 (67%), Gaps = 8/123 (6%)
Query: 62 RQLVQSFWEQQKSDIENATTESLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEM 121
+Q +QSFW + +I N T + R LPLARIKK+MK E+VKM +A++P +FAKA ++
Sbjct: 16 QQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQI 75
Query: 122 FIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLIDFVPYDCRQDDEAVEIRPAN 181
FI ELTLRAW+ TED KRRTLQR DIA A+ + FDFLID VP D E++P
Sbjct: 76 FITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRD--------ELKPPK 127
Query: 182 KQH 184
+Q
Sbjct: 128 RQE 130
>sp|Q13952|NFYC_HUMAN Nuclear transcription factor Y subunit gamma OS=Homo sapiens
GN=NFYC PE=1 SV=3
Length = 458
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/122 (52%), Positives = 83/122 (68%), Gaps = 8/122 (6%)
Query: 62 RQLVQSFWEQQKSDIENATTESLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEM 121
+Q +QSFW + +I N T + R LPLARIKK+MK E+VKM +A++P +FAKA ++
Sbjct: 16 QQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQI 75
Query: 122 FIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLIDFVPYDCRQDDEAVEIRPAN 181
FI ELTLRAW+ TED KRRTLQR DIA A+ + FDFLID VP D E++P
Sbjct: 76 FITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRD--------ELKPPK 127
Query: 182 KQ 183
+Q
Sbjct: 128 RQ 129
>sp|Q9FMV5|NFYC4_ARATH Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana
GN=NFYC4 PE=2 SV=1
Length = 250
Score = 124 bits (312), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 80/106 (75%), Gaps = 2/106 (1%)
Query: 68 FWEQQKSDIENATTESLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELT 127
FW Q+ +IE +NH LPLARIKK+MK+ E+V+M +A++P +FAKACE+FI+ELT
Sbjct: 60 FWTYQRQEIEQ--VNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELT 117
Query: 128 LRAWLQTEDGKRRTLQRCDIARALRLDELFDFLIDFVPYDCRQDDE 173
+R+WL E+ KRRTLQ+ DIA A+ ++FDFL+D VP + +++E
Sbjct: 118 IRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEE 163
>sp|Q557I1|NFYC_DICDI Nuclear transcription factor Y subunit gamma OS=Dictyostelium
discoideum GN=nfyc-1 PE=3 SV=1
Length = 684
Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 77/118 (65%), Gaps = 10/118 (8%)
Query: 65 VQSFWEQQKSDIENATTESLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIM 124
+ SFW Q DI TE + H LPLARIKK+MKS ++V ++++P +FAKACE+ I+
Sbjct: 249 LSSFWSSQLRDIH--KTEDFKTHELPLARIKKIMKSDKDVNKISSEAPILFAKACEILIL 306
Query: 125 ELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLIDFVPYDCRQDDEAVEIRPANK 182
E+T R+W+ TE KRRTLQR DI +L E FDFLID +P D EI+P+ K
Sbjct: 307 EMTHRSWVHTEMNKRRTLQRTDIINSLSRCETFDFLIDMLPRD--------EIKPSRK 356
>sp|Q02516|HAP5_YEAST Transcriptional activator HAP5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP5 PE=1 SV=1
Length = 242
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 81/116 (69%), Gaps = 6/116 (5%)
Query: 56 ALMLKQRQLVQSFWEQQKSDIENAT------TESLRNHLLPLARIKKVMKSREEVKMTTA 109
L+ ++++ +W++ ++IE+ + ++H LP ARI+KVMK+ E+VKM +A
Sbjct: 121 GLVGHYKEIMIRYWQELINEIESTNEPGSEHQDDFKSHSLPFARIRKVMKTDEDVKMISA 180
Query: 110 DSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLIDFVP 165
++P +FAKACE+FI ELT+RAW E KRRTLQ+ DIA AL+ ++FDFLID VP
Sbjct: 181 EAPIIFAKACEIFITELTMRAWCVAERNKRRTLQKADIAEALQKSDMFDFLIDVVP 236
>sp|Q58CM8|NFYCA_ARATH Nuclear transcription factor Y subunit C-10 OS=Arabidopsis thaliana
GN=NFYC10 PE=2 SV=1
Length = 195
Score = 107 bits (268), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 91/166 (54%), Gaps = 21/166 (12%)
Query: 1 MRRPKVDLNVSEDDFTPSSTPSQDAAPVHNFMPMTPFMLPSHQPTEEDEEEAHSLALMLK 60
MRRPK +V + P S HN MPM S+ P E SL LK
Sbjct: 1 MRRPKSS-HVRMEPVAPRS---------HNTMPMLD-QFRSNHPETSKIEGVSSLDTALK 49
Query: 61 QRQLVQSFWEQQKSDIENATTESLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACE 120
FW Q+ + N ++ LPL+R++K++KS EVK + D PA+F+KACE
Sbjct: 50 ------VFWNNQREQLGNFAGQTH----LPLSRVRKILKSDPEVKKISCDVPALFSKACE 99
Query: 121 MFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLIDFVPY 166
FI+E+TLRAW+ T+ R T++RCDI +A++ +DFLID VP+
Sbjct: 100 YFILEVTLRAWMHTQSCTRETIRRCDIFQAVKNSGTYDFLIDRVPF 145
>sp|Q9FGP7|NFYC6_ARATH Nuclear transcription factor Y subunit C-6 OS=Arabidopsis thaliana
GN=NFYC6 PE=2 SV=1
Length = 202
Score = 107 bits (267), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 74/113 (65%), Gaps = 5/113 (4%)
Query: 55 LALMLKQRQLVQSFWEQQKSDIENATTESLRNHLLPLARIKKVMKSREEVKMTTADSPAV 114
L M ++++W +Q T +N LPLARIKK+MK+ +V M +A++P +
Sbjct: 26 LPPMASSNPQLRNYWIEQME-----TVSDFKNRQLPLARIKKIMKADPDVHMVSAEAPII 80
Query: 115 FAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLIDFVPYD 167
FAKACEMFI++LT+R+WL+ E+ KR TLQ+ DI+ A+ +DFL+D VP D
Sbjct: 81 FAKACEMFIVDLTMRSWLKAEENKRHTLQKSDISNAVASSFTYDFLLDVVPKD 133
>sp|P79007|HAP5_SCHPO Transcriptional activator hap5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap5 PE=2 SV=1
Length = 415
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 76/114 (66%), Gaps = 3/114 (2%)
Query: 56 ALMLKQRQLVQSFWEQQKSDIENATTESLRNHLLPLARIKKVMKSREEVK--MTTADSPA 113
L+ Q + +W++ +E+ ++++ LPLARIKKVMK+ ++VK M +A++P
Sbjct: 77 GLVGSDAQALAEYWQKTIDTLEH-DDQAVKTLHLPLARIKKVMKTDDDVKNKMISAEAPF 135
Query: 114 VFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLIDFVPYD 167
+FAK E+FI ELT+RAWL + +RRTLQR DIA A+ E++DFLID + D
Sbjct: 136 LFAKGSEIFIAELTMRAWLHAKKNQRRTLQRSDIANAVSKSEMYDFLIDIISKD 189
>sp|Q9FGP8|NFYC7_ARATH Nuclear transcription factor Y subunit C-7 OS=Arabidopsis thaliana
GN=NFYC7 PE=2 SV=1
Length = 212
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 95/192 (49%), Gaps = 27/192 (14%)
Query: 54 SLALMLKQRQLVQSFWEQQKSDIENATTESLRNHLLPLARIKKVMKSREEVKMTTADSPA 113
S +L L ++++W Q + NAT +++H PL RIKK+MKS EV M TA++P
Sbjct: 34 SYSLPLPYSPQMRNYWIAQ---MGNAT--DVKHHAFPLTRIKKIMKSNPEVNMVTAEAPV 88
Query: 114 VFAKACEMFIMELTLRAWLQTEDGKRRTLQ------RCDIARALRLDELFDFLIDFVPYD 167
+ +KACEM I++LT+R+WL T +G R+TL+ R DI+ A F FL D VP D
Sbjct: 89 LISKACEMLILDLTMRSWLHTVEGGRQTLKRSDTLTRSDISAATTRSFKFTFLGDVVPRD 148
Query: 168 CRQDDEAVEIRPANKQHFPGVHVSANFMTPGMI--YPKVQQQVMMKPSPSIAEFDYGSTA 225
P+ P +H + PG + YP + P + E+
Sbjct: 149 -----------PSVVTDDPVLHPDGEVLPPGTVIGYPVFDCNGVYASPPQMQEW---PAV 194
Query: 226 KAMAEERAAEMG 237
EE A E+G
Sbjct: 195 PGDGEEAAGEIG 206
>sp|Q4PSE2|NFYC8_ARATH Nuclear transcription factor Y subunit C-8 OS=Arabidopsis thaliana
GN=NFYC8 PE=2 SV=1
Length = 187
Score = 91.3 bits (225), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 5/103 (4%)
Query: 60 KQRQLVQSFWEQQKSDIENATTESLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKAC 119
K + ++SFW + E +NH LP+ RIKK+MK +V M +++P + +KAC
Sbjct: 13 KGNEQLKSFWSK-----EMEGNLDFKNHDLPITRIKKIMKYDPDVTMIASEAPILLSKAC 67
Query: 120 EMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLID 162
EMFIM+LT+R+WL ++ KR TLQ+ ++ A+ +FDFL+D
Sbjct: 68 EMFIMDLTMRSWLHAQESKRVTLQKSNVDAAVAQTVIFDFLLD 110
>sp|Q9FGP6|NFYC5_ARATH Nuclear transcription factor Y subunit C-5 OS=Arabidopsis thaliana
GN=NFYC5 PE=2 SV=1
Length = 186
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 70/109 (64%), Gaps = 7/109 (6%)
Query: 60 KQRQLVQSFWEQQ-KSDIENATTESLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKA 118
K + ++SFW + + D+ +++NH P++RIK++MK +V M A++P + +KA
Sbjct: 13 KDNEQLKSFWSKGMEGDL------NVKNHEFPISRIKRIMKFDPDVSMIAAEAPNLLSKA 66
Query: 119 CEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLIDFVPYD 167
CEMF+M+LT+R+WL ++ R T+++ D+ + +FDFL D VP D
Sbjct: 67 CEMFVMDLTMRSWLHAQESNRLTIRKSDVDAVVSQTVIFDFLRDDVPKD 115
>sp|Q2YDP3|NC2A_BOVIN Dr1-associated corepressor OS=Bos taurus GN=DRAP1 PE=2 SV=1
Length = 205
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 86 NHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRC 145
N P ARIKK+M++ EE+ A P + ++A E+F+ L +A T+ +T+
Sbjct: 9 NARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTS 68
Query: 146 DIARALRLDELFDFLIDFV 164
+ + + L++ FDFL D V
Sbjct: 69 HLKQCIELEQQFDFLKDLV 87
>sp|A0JPP1|NC2A_RAT Dr1-associated corepressor OS=Rattus norvegicus GN=Drap1 PE=2 SV=1
Length = 205
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 86 NHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRC 145
N P ARIKK+M++ EE+ A P + ++A E+F+ L +A T+ +T+
Sbjct: 9 NARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTS 68
Query: 146 DIARALRLDELFDFLIDFV 164
+ + + L++ FDFL D V
Sbjct: 69 HLKQCIELEQQFDFLKDLV 87
>sp|Q14919|NC2A_HUMAN Dr1-associated corepressor OS=Homo sapiens GN=DRAP1 PE=1 SV=3
Length = 205
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 86 NHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRC 145
N P ARIKK+M++ EE+ A P + ++A E+F+ L +A T+ +T+
Sbjct: 9 NARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTS 68
Query: 146 DIARALRLDELFDFLIDFV 164
+ + + L++ FDFL D V
Sbjct: 69 HLKQCIELEQQFDFLKDLV 87
>sp|Q9D6N5|NC2A_MOUSE Dr1-associated corepressor OS=Mus musculus GN=Drap1 PE=2 SV=3
Length = 205
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 86 NHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRC 145
N P ARIKK+M++ EE+ A P + ++A E+F+ L +A T+ +T+
Sbjct: 9 NARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTS 68
Query: 146 DIARALRLDELFDFLIDFV 164
+ + + L++ FDFL D V
Sbjct: 69 HLKQCIELEQQFDFLKDLV 87
>sp|Q9CQ36|DPOE4_MOUSE DNA polymerase epsilon subunit 4 OS=Mus musculus GN=Pole4 PE=3 SV=1
Length = 118
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 83 SLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTL 142
+R LPLAR+K ++K+ +V + ++ + A+A E+F+ + A+ + GKR+TL
Sbjct: 36 GVRLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTL 95
Query: 143 QRCDIARALRLDELFDFL 160
QR D+ A+ + F FL
Sbjct: 96 QRRDLDNAIEAVDEFAFL 113
>sp|Q9NR33|DPOE4_HUMAN DNA polymerase epsilon subunit 4 OS=Homo sapiens GN=POLE4 PE=1 SV=2
Length = 117
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 85 RNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQR 144
R LPLAR+K ++K+ +V + ++ + A+A E+F+ + A+ + GKR+TLQR
Sbjct: 37 RLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQR 96
Query: 145 CDIARALRLDELFDFL 160
D+ A+ + F FL
Sbjct: 97 RDLDNAIEAVDEFAFL 112
>sp|A6QQ14|DPOE4_BOVIN DNA polymerase epsilon subunit 4 OS=Bos taurus GN=POLE4 PE=3 SV=1
Length = 116
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 85 RNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQR 144
R LPLAR+K ++K+ +V + ++ + A+A E+F+ + A+ + GKR+TLQR
Sbjct: 36 RLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQR 95
Query: 145 CDIARALRLDELFDFL 160
D+ A+ + F FL
Sbjct: 96 RDLDNAIEAVDEFAFL 111
>sp|Q9NRG0|CHRC1_HUMAN Chromatin accessibility complex protein 1 OS=Homo sapiens GN=CHRAC1
PE=1 SV=1
Length = 131
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 89 LPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIA 148
LPL+RI+ +MKS EV ++ + AKA E+F+ L ++ +++ L D+A
Sbjct: 19 LPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKKVLTYSDLA 78
Query: 149 RALRLDELFDFLIDFVP 165
+ E F FL D +P
Sbjct: 79 NTAQQSETFQFLADILP 95
>sp|Q54DA1|NC2A_DICDI Dr1-associated corepressor homolog OS=Dictyostelium discoideum
GN=drap1 PE=3 SV=1
Length = 550
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 89 LPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIA 148
P+ARIKK+M+ EEV + +P + ++ E+F+ +L ++ T+ K + + +
Sbjct: 9 FPMARIKKIMQKDEEVGKIASATPILISQCLELFMADLVMKTCKITQAKKGKVISVNHLK 68
Query: 149 RALRLDELFDFL---IDFVPYD 167
++ + FDFL +D +P D
Sbjct: 69 ECIKQESTFDFLTEIVDRIPDD 90
>sp|Q10315|DPB3_SCHPO DNA polymerase epsilon subunit C OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb3 PE=1 SV=1
Length = 199
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 89 LPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIA 148
P+ARIKK+M++ ++V +P + +KA E+F+ + + QT + + + +
Sbjct: 24 FPVARIKKIMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLHQAKRVTVSHLK 83
Query: 149 RALRLDELFDFLIDFV 164
A++ E FDFL D V
Sbjct: 84 HAVQSVEQFDFLQDIV 99
>sp|C6Y4D0|YCGV_SCHPO Putative transcription factor C16C4.22 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC16C4.22 PE=3 SV=1
Length = 87
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%)
Query: 88 LLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDI 147
+LPL+R+K+++K E+V + S + + A E+F+ +L A+ + KR+ ++ D+
Sbjct: 9 VLPLSRVKRIIKQDEDVHYCSNASALLISVATELFVEKLATEAYQLAKLQKRKGIRYRDV 68
Query: 148 ARALRLDELFDFLIDF 163
+R D+ F+FL D
Sbjct: 69 EDVVRKDDQFEFLSDL 84
>sp|Q9JKP8|CHRC1_MOUSE Chromatin accessibility complex protein 1 OS=Mus musculus GN=Chrac1
PE=1 SV=1
Length = 129
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%)
Query: 89 LPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIA 148
LPL+RI+ +MKS EV ++ + AKA E+F+ L ++ ++ L D+A
Sbjct: 19 LPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQYLATCSYRHGSGKAKKALTYSDLA 78
Query: 149 RALRLDELFDFLIDFVP 165
E FL D +P
Sbjct: 79 STAEDSETLQFLADILP 95
>sp|Q6C6M5|DPB3_YARLI DNA polymerase epsilon subunit C OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB3 PE=3 SV=1
Length = 114
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 89 LPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIA 148
P+ARIKK+M+S +++ +P AKA E+F++ L Q + + +
Sbjct: 12 FPVARIKKLMQSDDDIGKVAQATPTAVAKALELFMISLIEETCNQARMRNSKRVSPSHLK 71
Query: 149 RALRLDELFDFLIDFV 164
+A+ E FDFL D V
Sbjct: 72 QAVLETEQFDFLQDIV 87
>sp|Q6BX14|DPB3_DEBHA DNA polymerase epsilon subunit C OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB3 PE=3 SV=1
Length = 277
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 89 LPLARIKKVMKSREEVKMTTADSPAVFAK--ACEMFIMELTLRAWLQTEDGKRRTLQRCD 146
LPL++IKK+ K + A AV+A A E+FI T ++ + + KR+ LQ D
Sbjct: 92 LPLSKIKKIFKMDPD--YLAASQSAVYATGLATELFIQYFTEQSLVLAKMDKRKKLQYKD 149
Query: 147 IARALRLDELFDFLIDFVP 165
+ A+ + +FL D VP
Sbjct: 150 FSNAVASQDSLNFLSDTVP 168
>sp|P40096|NCB1_YEAST Negative cofactor 2 complex subunit alpha OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BUR6 PE=1
SV=1
Length = 142
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 84 LRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAW-LQTEDGKRRTL 142
++ H P A++KK+M++ E++ + +P + ++ E FI L ++ + G +R
Sbjct: 49 IKTHFPP-AKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRIT 107
Query: 143 QRCDIARALRLDELFDFL 160
+ + + DE FDFL
Sbjct: 108 AEI-LKKTILNDEKFDFL 124
>sp|P0AG02|WZZE_SHIFL Lipopolysaccharide biosynthesis protein WzzE OS=Shigella flexneri
GN=wzzE PE=3 SV=2
Length = 348
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Query: 105 KMTTADSPAVFAKACEMFIMEL----TLRA-WLQTEDGKRRTLQRCDIARALRLDELFDF 159
M +AD P+V +A + F+M+L T R WLQT+ K+R + AL LDE+ +
Sbjct: 87 NMASADQPSVMDEAYKEFVMQLASWDTRREFWLQTDYYKQRMVGNSKADAAL-LDEMINN 145
Query: 160 LIDFVPYD-CRQDDEAVEI 177
I F+P D R +++V++
Sbjct: 146 -IQFIPGDFTRAVNDSVKL 163
>sp|P0AG00|WZZE_ECOLI Lipopolysaccharide biosynthesis protein WzzE OS=Escherichia coli
(strain K12) GN=wzzE PE=1 SV=2
Length = 348
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Query: 105 KMTTADSPAVFAKACEMFIMEL----TLRA-WLQTEDGKRRTLQRCDIARALRLDELFDF 159
M +AD P+V +A + F+M+L T R WLQT+ K+R + AL LDE+ +
Sbjct: 87 NMASADQPSVMDEAYKEFVMQLASWDTRREFWLQTDYYKQRMVGNSKADAAL-LDEMINN 145
Query: 160 LIDFVPYD-CRQDDEAVEI 177
I F+P D R +++V++
Sbjct: 146 -IQFIPGDFTRAVNDSVKL 163
>sp|P0AG01|WZZE_ECO57 Lipopolysaccharide biosynthesis protein WzzE OS=Escherichia coli
O157:H7 GN=wzzE PE=1 SV=2
Length = 348
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Query: 105 KMTTADSPAVFAKACEMFIMEL----TLRA-WLQTEDGKRRTLQRCDIARALRLDELFDF 159
M +AD P+V +A + F+M+L T R WLQT+ K+R + AL LDE+ +
Sbjct: 87 NMASADQPSVMDEAYKEFVMQLASWDTRREFWLQTDYYKQRMVGNSKADAAL-LDEMINN 145
Query: 160 LIDFVPYD-CRQDDEAVEI 177
I F+P D R +++V++
Sbjct: 146 -IQFIPGDFTRAVNDSVKL 163
>sp|Q93VH2|BBD2_ARATH Bifunctional nuclease 2 OS=Arabidopsis thaliana GN=BBD2 PE=2 SV=1
Length = 329
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 36 PFMLPSHQPTEEDEEEAHSLALMLKQRQLVQSFW-EQQKSDIENATTESLRNHLLPLARI 94
P + PS +P + + K R L + FW Q K+D A T +LR HL I
Sbjct: 7 PVVCPSVRPRQLGVSALLVNCSVSKTRSLRKQFWGNQTKNDKSQAATVNLRLHLRRYKSI 66
Query: 95 KKVMKSREEVKMTTADS 111
K + S + +TA++
Sbjct: 67 KCLFSSHSDGTGSTAEN 83
>sp|O42250|VSX1_DANRE Visual system homeobox 1 OS=Danio rerio GN=vsx1 PE=1 SV=2
Length = 344
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 17/124 (13%)
Query: 33 PMTPFMLPSHQPTEEDEEEAHSLALMLKQRQLVQ--SFWEQQKSDIENATTESLRNHLLP 90
P P LPSH P + E+H + + +QR + ++D +N+ R
Sbjct: 95 PGAPCFLPSHIPLLQSRTESHFMQNLEQQRDVYSDDDCLSGDRNDGKNSGNSQKRKKR-- 152
Query: 91 LARIKKVMKSRE----EVKMTTADSPAVFAKACEMFIMELTL-----RAWLQTEDGKRRT 141
R + V S + E A P V+A+ EM M+ L + W Q K R
Sbjct: 153 --RHRTVFTSHQLEELEKAFNEAHYPDVYAR--EMLAMKTELPEDRIQVWFQNRRAKWRK 208
Query: 142 LQRC 145
++C
Sbjct: 209 REKC 212
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,689,824
Number of Sequences: 539616
Number of extensions: 3319361
Number of successful extensions: 9593
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 9545
Number of HSP's gapped (non-prelim): 50
length of query: 237
length of database: 191,569,459
effective HSP length: 114
effective length of query: 123
effective length of database: 130,053,235
effective search space: 15996547905
effective search space used: 15996547905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)