Query 045847
Match_columns 237
No_of_seqs 206 out of 636
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 10:22:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045847.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045847hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_C HAPE; transcription fac 100.0 1.4E-35 4.7E-40 237.9 10.7 110 56-166 10-119 (119)
2 1n1j_B NF-YC; histone-like PAI 100.0 1.3E-29 4.4E-34 196.3 9.8 95 71-166 2-97 (97)
3 1jfi_A Transcription regulator 99.9 2.1E-27 7.1E-32 184.6 7.1 86 84-169 7-92 (98)
4 2byk_A Chrac-16; nucleosome sl 99.9 2.7E-27 9.4E-32 195.2 7.6 85 86-170 17-102 (140)
5 2byk_B Chrac-14; nucleosome sl 99.8 1.7E-20 5.8E-25 152.3 6.9 78 86-163 7-85 (128)
6 1n1j_A NF-YB; histone-like PAI 99.8 9.1E-20 3.1E-24 139.4 7.1 79 86-167 6-85 (93)
7 1b67_A Protein (histone HMFA); 99.6 3.4E-15 1.2E-19 107.6 7.6 65 88-153 2-66 (68)
8 3b0c_W CENP-W, centromere prot 99.6 7.5E-15 2.6E-19 108.8 7.6 67 86-153 2-69 (76)
9 1jfi_B DR1 protein, transcript 99.5 9.2E-14 3.2E-18 118.9 7.7 77 86-163 13-90 (179)
10 1id3_C Histone H2A.1; nucleoso 99.4 8.9E-13 3.1E-17 107.6 8.2 79 84-162 21-99 (131)
11 2nqb_C Histone H2A; nucleosome 99.3 1.8E-12 6.3E-17 104.7 8.2 79 84-162 19-97 (123)
12 1tzy_A Histone H2A-IV; histone 99.3 1.9E-12 6.6E-17 105.4 8.2 79 84-162 21-99 (129)
13 2f8n_G Core histone macro-H2A. 99.3 2E-12 6.8E-17 104.1 7.9 79 84-162 18-96 (120)
14 1f66_C Histone H2A.Z; nucleoso 99.3 3.2E-12 1.1E-16 104.0 7.2 79 84-162 23-102 (128)
15 2f8n_K Histone H2A type 1; nuc 99.3 4E-12 1.4E-16 106.1 7.3 79 84-162 40-118 (149)
16 1ku5_A HPHA, archaeal histon; 99.2 7.7E-11 2.6E-15 85.6 7.6 65 87-152 5-69 (70)
17 2jss_A Chimera of histone H2B. 99.2 6.4E-11 2.2E-15 101.3 8.0 79 84-162 101-180 (192)
18 1f1e_A Histone fold protein; a 99.0 7.8E-10 2.7E-14 92.6 7.7 69 85-154 79-147 (154)
19 3b0c_T CENP-T, centromere prot 99.0 9.5E-10 3.3E-14 87.2 6.8 76 86-162 5-80 (111)
20 1f1e_A Histone fold protein; a 98.9 2.4E-09 8.4E-14 89.6 7.7 66 87-153 3-69 (154)
21 1tzy_D Histone H4-VI; histone- 98.9 4E-09 1.4E-13 82.2 8.0 68 87-155 28-95 (103)
22 2yfw_B Histone H4, H4; cell cy 98.9 3.6E-09 1.2E-13 82.6 7.4 67 87-154 28-94 (103)
23 2hue_C Histone H4; mini beta s 98.9 9E-09 3.1E-13 77.5 8.2 68 86-154 8-75 (84)
24 1id3_B Histone H4; nucleosome 98.8 1.8E-08 6E-13 78.9 7.8 67 87-154 27-93 (102)
25 1taf_B TFIID TBP associated fa 98.5 6.9E-07 2.4E-11 66.1 8.2 66 86-152 4-69 (70)
26 2hue_B Histone H3; mini beta s 98.0 1.6E-05 5.4E-10 59.8 6.3 65 89-153 7-72 (77)
27 1taf_A TFIID TBP associated fa 97.7 0.00016 5.3E-09 53.1 7.4 60 93-153 6-65 (68)
28 2ly8_A Budding yeast chaperone 97.7 0.00011 3.8E-09 59.4 7.1 54 102-155 60-113 (121)
29 4dra_A Centromere protein S; D 97.6 5E-05 1.7E-09 60.9 5.1 63 94-157 33-98 (113)
30 3b0b_B CENP-S, centromere prot 97.5 0.0001 3.6E-09 58.3 5.3 53 105-157 38-90 (107)
31 1tzy_C Histone H3; histone-fol 97.5 0.00048 1.6E-08 56.7 8.6 77 74-152 50-130 (136)
32 3nqj_A Histone H3-like centrom 97.4 0.0004 1.4E-08 52.7 7.2 48 105-152 26-73 (82)
33 3r45_A Histone H3-like centrom 97.4 0.00025 8.7E-09 59.6 6.4 78 73-152 64-147 (156)
34 2yfv_A Histone H3-like centrom 97.4 0.00034 1.2E-08 54.8 6.8 49 104-152 50-98 (100)
35 3v9r_A MHF1, uncharacterized p 97.4 0.00045 1.5E-08 53.2 7.1 53 105-157 31-83 (90)
36 3nqu_A Histone H3-like centrom 97.4 0.00037 1.3E-08 57.7 6.8 79 73-152 48-131 (140)
37 2l5a_A Histone H3-like centrom 97.3 0.00023 7.9E-09 63.2 4.7 96 58-154 97-226 (235)
38 3vh5_A CENP-S; histone fold, c 97.2 0.00035 1.2E-08 57.9 5.4 58 105-162 38-96 (140)
39 3ksy_A SOS-1, SON of sevenless 97.2 0.0009 3.1E-08 68.8 9.1 78 83-161 99-176 (1049)
40 4dra_E Centromere protein X; D 97.2 0.0016 5.6E-08 49.6 8.2 67 86-152 10-78 (84)
41 3b0b_C CENP-X, centromere prot 97.0 0.0019 6.6E-08 48.7 7.3 68 86-153 6-75 (81)
42 1bh9_B TAFII28; histone fold, 96.8 0.0052 1.8E-07 47.0 7.9 69 83-153 12-81 (89)
43 1tzy_B Histone H2B; histone-fo 96.4 0.0067 2.3E-07 49.4 6.7 59 93-152 41-100 (126)
44 2jss_A Chimera of histone H2B. 96.0 0.015 5.3E-07 49.4 6.9 59 93-152 8-67 (192)
45 2l5a_A Histone H3-like centrom 95.9 0.017 5.7E-07 51.4 6.8 69 87-155 13-85 (235)
46 2nqb_D Histone H2B; nucleosome 95.7 0.021 7.1E-07 46.4 6.3 59 93-152 38-97 (123)
47 3v9r_B MHF2, uncharacterized p 94.8 0.094 3.2E-06 40.4 7.2 63 89-151 2-73 (88)
48 1h3o_B Transcription initiatio 91.7 0.66 2.3E-05 34.5 7.1 67 87-154 4-71 (76)
49 2ly8_A Budding yeast chaperone 75.2 3.8 0.00013 32.8 4.8 73 87-164 3-85 (121)
50 3kw6_A 26S protease regulatory 69.2 5.7 0.0002 27.7 4.1 42 112-153 27-72 (78)
51 2dzn_B 26S protease regulatory 63.6 9.2 0.00032 27.1 4.3 32 123-154 37-68 (82)
52 2krk_A 26S protease regulatory 59.8 10 0.00036 27.5 4.1 31 123-153 50-80 (86)
53 3aji_B S6C, proteasome (prosom 59.3 9.4 0.00032 26.8 3.7 32 123-154 40-71 (83)
54 3vlf_B 26S protease regulatory 55.0 11 0.00039 27.1 3.6 42 112-153 25-70 (88)
55 2v1u_A Cell division control p 49.5 50 0.0017 27.8 7.2 64 91-154 203-276 (387)
56 1h3o_A Transcription initiatio 45.0 31 0.0011 25.5 4.5 41 92-133 10-50 (75)
57 1g8p_A Magnesium-chelatase 38 44.8 70 0.0024 26.8 7.4 48 106-153 267-321 (350)
58 3uk6_A RUVB-like 2; hexameric 44.5 66 0.0023 27.3 7.3 65 89-153 259-329 (368)
59 1wwi_A Hypothetical protein TT 44.3 36 0.0012 28.2 5.3 59 88-147 2-60 (148)
60 3k1j_A LON protease, ATP-depen 42.9 56 0.0019 31.0 7.2 51 105-155 313-376 (604)
61 2qby_A CDC6 homolog 1, cell di 36.1 86 0.0029 26.2 6.6 65 91-155 199-273 (386)
62 4b4t_K 26S protease regulatory 35.9 29 0.00098 32.4 3.9 42 112-153 368-413 (428)
63 3h4m_A Proteasome-activating n 33.2 43 0.0015 27.4 4.2 43 112-154 212-258 (285)
64 1ldd_A APC2WHB, anaphase promo 31.8 23 0.00078 26.0 2.0 32 62-100 3-34 (74)
65 1lv7_A FTSH; alpha/beta domain 27.9 61 0.0021 26.3 4.2 42 112-153 206-251 (257)
66 4b4t_J 26S protease regulatory 27.2 55 0.0019 30.6 4.2 42 112-153 343-388 (405)
67 4b4t_I 26S protease regulatory 26.0 59 0.002 30.8 4.2 42 112-153 377-422 (437)
68 4b4t_L 26S protease subunit RP 25.6 60 0.0021 30.4 4.2 42 112-153 376-421 (437)
69 4b4t_M 26S protease regulatory 24.2 59 0.002 30.4 3.8 42 113-154 377-422 (434)
70 1ixz_A ATP-dependent metallopr 23.9 75 0.0026 25.7 4.0 40 112-151 210-253 (254)
71 4b4t_H 26S protease regulatory 22.0 63 0.0022 30.8 3.6 42 112-153 404-449 (467)
72 1iy2_A ATP-dependent metallopr 21.4 87 0.003 25.9 4.0 40 112-151 234-277 (278)
73 2jxf_A NS4B(40-69), genome pol 20.5 55 0.0019 20.4 1.9 12 63-74 5-16 (30)
74 1fnn_A CDC6P, cell division co 20.3 2.8E+02 0.0095 23.2 7.0 49 106-154 214-274 (389)
75 1r4v_A Hypothetical protein AQ 20.2 63 0.0022 27.4 2.8 59 88-147 26-84 (171)
No 1
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=100.00 E-value=1.4e-35 Score=237.92 Aligned_cols=110 Identities=51% Similarity=0.873 Sum_probs=105.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045847 56 ALMLKQRQLVQSFWEQQKSDIENATTESLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTE 135 (237)
Q Consensus 56 ~~~~~~~q~L~~FW~~~~~eie~~~~~fk~~~~LPLARIKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~ 135 (237)
.|..+.++.|.+||++++++||+...+|| .++||+||||||||.||++++||++|++++++|||+||.+|+.+||.+|+
T Consensus 10 ~l~~~~~~~l~~fw~~~~~~~e~~~~d~k-~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~ 88 (119)
T 4g92_C 10 GLQGTARDILTTYWQHVINHLESDNHDYK-IHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAE 88 (119)
T ss_dssp TCCTHHHHHHHHHHHHHHHHHTCSCCCSS-CCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccccc-cCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999998876699 99999999999999999999999999999999999999999999999999
Q ss_pred hCCCCcccHHHHHHHHhcCCcccchhhcCCC
Q 045847 136 DGKRRTLQRCDIARALRLDELFDFLIDFVPY 166 (237)
Q Consensus 136 ~~kRKTLq~~DIa~AV~~~d~fdFL~DIVP~ 166 (237)
.+|||||+|+||+.||++++.||||.|+||+
T Consensus 89 ~~krktI~~~di~~Av~~~e~~dFL~DiVPk 119 (119)
T 4g92_C 89 DNKRRTLQRSDIAAALSKSDMFDFLIDIVPR 119 (119)
T ss_dssp HTTCSEECHHHHHHHHTTCGGGGGGTTTCC-
T ss_pred hcccCccCHHHHHHHHhcCchhhHHHHhCCC
Confidence 9999999999999999999999999999996
No 2
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.96 E-value=1.3e-29 Score=196.33 Aligned_cols=95 Identities=57% Similarity=0.833 Sum_probs=77.4
Q ss_pred HHHHHHHhhh-hhhccCCCCChHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHH
Q 045847 71 QQKSDIENAT-TESLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIAR 149 (237)
Q Consensus 71 ~~~~eie~~~-~~fk~~~~LPLARIKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~ 149 (237)
++++||+++. .+++ .+.||+||||||||.|+++++||+||++++++|||+||++|+.+||.+|+.+|||||+|+||+.
T Consensus 2 ~~~~~~~~~~~~~~~-~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~ 80 (97)
T 1n1j_B 2 SHMEEIRNLTVKDFR-VQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAM 80 (97)
T ss_dssp -------------------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred cHHHHHHhcccCCcC-CCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHH
Confidence 4677888863 2388 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcccchhhcCCC
Q 045847 150 ALRLDELFDFLIDFVPY 166 (237)
Q Consensus 150 AV~~~d~fdFL~DIVP~ 166 (237)
||.+++.|+||.|+||+
T Consensus 81 Av~~~e~~~FL~divP~ 97 (97)
T 1n1j_B 81 AITKFDQFDFLIDIVPR 97 (97)
T ss_dssp HHTTCGGGGGGTTTSCC
T ss_pred HHhcCcHHHHHHhhCCC
Confidence 99999999999999996
No 3
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.94 E-value=2.1e-27 Score=184.60 Aligned_cols=86 Identities=23% Similarity=0.299 Sum_probs=62.7
Q ss_pred ccCCCCChHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcCCcccchhhc
Q 045847 84 LRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLIDF 163 (237)
Q Consensus 84 k~~~~LPLARIKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~d~fdFL~DI 163 (237)
+..+.||++|||||||.|+++++||++|++++++|||+|+++|+.+||.+|+.++||||+|+||..||.+++.|+||.|+
T Consensus 7 k~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~di 86 (98)
T 1jfi_A 7 KYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANKAR 86 (98)
T ss_dssp ---CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-----------
T ss_pred ccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHHhc
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 045847 164 VPYDCR 169 (237)
Q Consensus 164 VP~~~~ 169 (237)
+|++..
T Consensus 87 vp~k~~ 92 (98)
T 1jfi_A 87 KEAELA 92 (98)
T ss_dssp ------
T ss_pred CchHhh
Confidence 999753
No 4
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.94 E-value=2.7e-27 Score=195.19 Aligned_cols=85 Identities=22% Similarity=0.433 Sum_probs=70.0
Q ss_pred CCCCChHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCcccHHHHHHHHhcCCcccchhhcC
Q 045847 86 NHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQT-EDGKRRTLQRCDIARALRLDELFDFLIDFV 164 (237)
Q Consensus 86 ~~~LPLARIKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A-~~~kRKTLq~~DIa~AV~~~d~fdFL~DIV 164 (237)
.+.||+||||||||.||++++||++|++++++|||+||++|+.+||.+| +.++||||+|+||+.||.+.+.|+||.|||
T Consensus 17 ~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~div 96 (140)
T 2byk_A 17 ETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLLQIV 96 (140)
T ss_dssp ------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGTTTS
T ss_pred CCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHhccc
Confidence 7899999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCCCCC
Q 045847 165 PYDCRQ 170 (237)
Q Consensus 165 P~~~~~ 170 (237)
|++...
T Consensus 97 P~ki~l 102 (140)
T 2byk_A 97 PQKIRV 102 (140)
T ss_dssp CSCC--
T ss_pred cchhhH
Confidence 997543
No 5
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.81 E-value=1.7e-20 Score=152.35 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=71.9
Q ss_pred CCCCChHHHHHHhh-cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcCCcccchhhc
Q 045847 86 NHLLPLARIKKVMK-SREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLIDF 163 (237)
Q Consensus 86 ~~~LPLARIKKIMK-~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~d~fdFL~DI 163 (237)
.+.||+|||+|||| .+|++.+||+||+++|++|||+||.+||.+||.+|...+||||+++||..||...+.++||..+
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~~l 85 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVPSL 85 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHHHH
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHHHHH
Confidence 57899999999999 6899999999999999999999999999999999999999999999999999999999999855
No 6
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.79 E-value=9.1e-20 Score=139.38 Aligned_cols=79 Identities=23% Similarity=0.302 Sum_probs=74.0
Q ss_pred CCCCChHHHHHHhhcc-cccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcCCcccchhhcC
Q 045847 86 NHLLPLARIKKVMKSR-EEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLIDFV 164 (237)
Q Consensus 86 ~~~LPLARIKKIMK~D-pDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~d~fdFL~DIV 164 (237)
.+.||+++|+||||.+ |++.+||+||..++++|||+||.+|+.+|+.+|...|||||+++||..|++ .++|+.++.
T Consensus 6 d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~---~l~F~~~i~ 82 (93)
T 1n1j_A 6 DIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS---TLGFDSYVE 82 (93)
T ss_dssp -CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH---HTTCGGGHH
T ss_pred cccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH---HcCcHhhHH
Confidence 6789999999999999 999999999999999999999999999999999999999999999999997 788888877
Q ss_pred CCC
Q 045847 165 PYD 167 (237)
Q Consensus 165 P~~ 167 (237)
|.+
T Consensus 83 ~~~ 85 (93)
T 1n1j_A 83 PLK 85 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 7
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.58 E-value=3.4e-15 Score=107.64 Aligned_cols=65 Identities=25% Similarity=0.313 Sum_probs=62.5
Q ss_pred CCChHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhc
Q 045847 88 LLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRL 153 (237)
Q Consensus 88 ~LPLARIKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~ 153 (237)
.||.++|+||||.+ ++.+||+||..++++|+|.|+.+|+.+|+.+|...||+||+++||..|++.
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 59999999999998 778999999999999999999999999999999999999999999999864
No 8
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.56 E-value=7.5e-15 Score=108.81 Aligned_cols=67 Identities=13% Similarity=0.234 Sum_probs=61.8
Q ss_pred CCCCChHHHHHHhh-cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhc
Q 045847 86 NHLLPLARIKKVMK-SREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRL 153 (237)
Q Consensus 86 ~~~LPLARIKKIMK-~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~ 153 (237)
...||+|+|+|||| ..|+ ..||+||..++.++||+||++|+.+|+..|..++||||+++||..|++.
T Consensus 2 ~~~LP~A~V~rI~K~~~p~-~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 2 RRTVPRGTLRKIIKKHKPH-LRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp --CCCHHHHHHHHHHHCTT-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHhCCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 46799999999999 7787 4899999999999999999999999999999999999999999999874
No 9
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.46 E-value=9.2e-14 Score=118.91 Aligned_cols=77 Identities=17% Similarity=0.259 Sum_probs=72.1
Q ss_pred CCCCChHHHHHHhhcc-cccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcCCcccchhhc
Q 045847 86 NHLLPLARIKKVMKSR-EEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLIDF 163 (237)
Q Consensus 86 ~~~LPLARIKKIMK~D-pDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~d~fdFL~DI 163 (237)
.+.||+|+|.||||.. | ..+||+||..+|+++|+.||.+||.+|+..|...+||||+++||..|+...+..+|+..+
T Consensus 13 D~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv~~l 90 (179)
T 1jfi_B 13 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEV 90 (179)
T ss_dssp CCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGHHHH
T ss_pred hhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHHHHH
Confidence 6889999999999987 6 679999999999999999999999999999999999999999999999988888887743
No 10
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.38 E-value=8.9e-13 Score=107.64 Aligned_cols=79 Identities=15% Similarity=0.248 Sum_probs=75.8
Q ss_pred ccCCCCChHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcCCcccchhh
Q 045847 84 LRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLID 162 (237)
Q Consensus 84 k~~~~LPLARIKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~d~fdFL~D 162 (237)
+..+.||++||+|+||.+....+|+++|+++++.++|.|+.++...|++.|...+|++|+..||..||.+++.|++|..
T Consensus 21 ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~nDeEL~~Ll~ 99 (131)
T 1id3_C 21 KAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLG 99 (131)
T ss_dssp GGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCHHHHHHTT
T ss_pred cCCeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhccHHHHHHhc
Confidence 4478999999999999999999999999999999999999999999999999999999999999999999999999884
No 11
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=99.35 E-value=1.8e-12 Score=104.72 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=75.5
Q ss_pred ccCCCCChHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcCCcccchhh
Q 045847 84 LRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLID 162 (237)
Q Consensus 84 k~~~~LPLARIKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~d~fdFL~D 162 (237)
+..+.||++||+|+||.+....+|+++|++.++.++|.|+.++...|++.|...+|++|+..||..||.+++.|++|..
T Consensus 19 ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~Ll~ 97 (123)
T 2nqb_C 19 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 97 (123)
T ss_dssp HHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred cCCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhccHHHHHHhc
Confidence 3478999999999999998899999999999999999999999999999999999999999999999999999999884
No 12
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=99.35 E-value=1.9e-12 Score=105.41 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=75.6
Q ss_pred ccCCCCChHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcCCcccchhh
Q 045847 84 LRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLID 162 (237)
Q Consensus 84 k~~~~LPLARIKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~d~fdFL~D 162 (237)
+..+.||++||.|+||.+....+|+++|+++++.++|.|+.++...|++.|...+|++|+..||..||.+++.|++|..
T Consensus 21 ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~L~~ 99 (129)
T 1tzy_A 21 RAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLG 99 (129)
T ss_dssp HHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred cCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHHHHhC
Confidence 3478999999999999998899999999999999999999999999999999999999999999999999999999884
No 13
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=99.34 E-value=2e-12 Score=104.14 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=75.5
Q ss_pred ccCCCCChHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcCCcccchhh
Q 045847 84 LRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLID 162 (237)
Q Consensus 84 k~~~~LPLARIKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~d~fdFL~D 162 (237)
+..+.||++||.|+||.+....+|+++|++.++.++|.|..++...|++.|..++|++|+..||..||.+++.|++|..
T Consensus 18 ragLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~nDeEL~~Ll~ 96 (120)
T 2f8n_G 18 KAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLK 96 (120)
T ss_dssp HHTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred ccCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhcCHHHHHHhC
Confidence 3478999999999999998889999999999999999999999999999999999999999999999999999999984
No 14
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=99.30 E-value=3.2e-12 Score=104.00 Aligned_cols=79 Identities=25% Similarity=0.223 Sum_probs=74.7
Q ss_pred ccCCCCChHHHHHHhhccccc-ccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcCCcccchhh
Q 045847 84 LRNHLLPLARIKKVMKSREEV-KMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLID 162 (237)
Q Consensus 84 k~~~~LPLARIKKIMK~DpDV-~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~d~fdFL~D 162 (237)
+..+.||++||.|+||.+... .+|+++|++.++.++|.|+.++...|++.|...++++|+..||..||.+++.|++|.+
T Consensus 23 ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~nDeEL~~Ll~ 102 (128)
T 1f66_C 23 RAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK 102 (128)
T ss_dssp HHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSHHHHHHCC
T ss_pred cCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHhhhhc
Confidence 347899999999999998866 4999999999999999999999999999999999999999999999999999999986
No 15
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=99.29 E-value=4e-12 Score=106.10 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=75.7
Q ss_pred ccCCCCChHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcCCcccchhh
Q 045847 84 LRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLID 162 (237)
Q Consensus 84 k~~~~LPLARIKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~d~fdFL~D 162 (237)
+..+.||++||.|+||.+....+|+++|+++++.++|.|+.++...|++.|...+|++|+..||..||.+++.|++|..
T Consensus 40 ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~nDeEL~~Ll~ 118 (149)
T 2f8n_K 40 RAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLG 118 (149)
T ss_dssp HHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHTT
T ss_pred cCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhccHHHHHHhc
Confidence 4478999999999999998999999999999999999999999999999999999999999999999999999999884
No 16
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.16 E-value=7.7e-11 Score=85.58 Aligned_cols=65 Identities=20% Similarity=0.337 Sum_probs=62.1
Q ss_pred CCCChHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHh
Q 045847 87 HLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALR 152 (237)
Q Consensus 87 ~~LPLARIKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~ 152 (237)
..||.+.|+||+|.. ++..+|.+|...+..++|.|+..++..|..+|+..||+||+.+||..|++
T Consensus 5 ~~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 5 GELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CCSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred ccCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 579999999999975 78999999999999999999999999999999999999999999999986
No 17
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.15 E-value=6.4e-11 Score=101.29 Aligned_cols=79 Identities=20% Similarity=0.205 Sum_probs=74.8
Q ss_pred ccCCCCChHHHHHHhhccccc-ccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcCCcccchhh
Q 045847 84 LRNHLLPLARIKKVMKSREEV-KMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLID 162 (237)
Q Consensus 84 k~~~~LPLARIKKIMK~DpDV-~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~d~fdFL~D 162 (237)
+..+.||++||+|+||.+... .+|+.+|++.++..+|.++.++...|++.|...||++|+..||..||.+++.|++|.+
T Consensus 101 ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~eL~~L~~ 180 (192)
T 2jss_A 101 RAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIR 180 (192)
T ss_dssp HSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSHHHHHHHC
T ss_pred cCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccHHHHHHHh
Confidence 347899999999999998776 5999999999999999999999999999999999999999999999999999999986
No 18
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.99 E-value=7.8e-10 Score=92.56 Aligned_cols=69 Identities=19% Similarity=0.293 Sum_probs=65.3
Q ss_pred cCCCCChHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcC
Q 045847 85 RNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLD 154 (237)
Q Consensus 85 ~~~~LPLARIKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~ 154 (237)
..+.||++.|.||||.. ++.+||.+|...++.++|.|+.+++..|...|...|||||+..||..|+++.
T Consensus 79 ~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 79 DGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp CSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 36789999999999998 7889999999999999999999999999999999999999999999999753
No 19
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.96 E-value=9.5e-10 Score=87.20 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=67.0
Q ss_pred CCCCChHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcCCcccchhh
Q 045847 86 NHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLID 162 (237)
Q Consensus 86 ~~~LPLARIKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~d~fdFL~D 162 (237)
...||.+-|+||||.. ++..||.++...+..+++.|++.++..|...|++.|||||+.+||..|+++.+...+..+
T Consensus 5 d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~ 80 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMP 80 (111)
T ss_dssp -----CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBC
T ss_pred CCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCcccccc
Confidence 5779999999999987 788999999999999999999999999999999999999999999999999887777554
No 20
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.91 E-value=2.4e-09 Score=89.58 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=62.4
Q ss_pred CCCChHHHHHHhhcc-cccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhc
Q 045847 87 HLLPLARIKKVMKSR-EEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRL 153 (237)
Q Consensus 87 ~~LPLARIKKIMK~D-pDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~ 153 (237)
..||.+-|.||||.. ++ .+||.||...++.++|.|+.+++..|...|++.|||||+..||..|+..
T Consensus 3 ~~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~ 69 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADV 69 (154)
T ss_dssp -CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred ccCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 469999999999998 76 8999999999999999999999999999999999999999999999954
No 21
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.90 E-value=4e-09 Score=82.16 Aligned_cols=68 Identities=19% Similarity=0.194 Sum_probs=63.8
Q ss_pred CCCChHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcCC
Q 045847 87 HLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDE 155 (237)
Q Consensus 87 ~~LPLARIKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~d 155 (237)
.-||.++|+||++.. .+..||.+|...++..+|.|+++++..|..+|+..+|+||+..||..|+++..
T Consensus 28 ~gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g 95 (103)
T 1tzy_D 28 QGITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 95 (103)
T ss_dssp GGSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcC
Confidence 349999999999986 57899999999999999999999999999999999999999999999999763
No 22
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.89 E-value=3.6e-09 Score=82.55 Aligned_cols=67 Identities=19% Similarity=0.206 Sum_probs=62.4
Q ss_pred CCCChHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcC
Q 045847 87 HLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLD 154 (237)
Q Consensus 87 ~~LPLARIKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~ 154 (237)
.-||.++|+||++.. .+..||.+|...++.++|.|+++++..|..+|+..+|+||+..||..|+++.
T Consensus 28 ~gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 28 QGITKPAIRRLARRG-GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp --CCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 449999999999985 5689999999999999999999999999999999999999999999999865
No 23
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.85 E-value=9e-09 Score=77.55 Aligned_cols=68 Identities=19% Similarity=0.184 Sum_probs=64.5
Q ss_pred CCCCChHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcC
Q 045847 86 NHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLD 154 (237)
Q Consensus 86 ~~~LPLARIKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~ 154 (237)
...||.+-|+||+|.. ++..||.++...+..++|.|++.++.+|..+|+..|||||+..||..|++..
T Consensus 8 ~~~ip~~~I~Riar~~-Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 8 IQGITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp CCSSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 4679999999999985 6899999999999999999999999999999999999999999999999865
No 24
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.77 E-value=1.8e-08 Score=78.85 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=63.6
Q ss_pred CCCChHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcC
Q 045847 87 HLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLD 154 (237)
Q Consensus 87 ~~LPLARIKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~ 154 (237)
..||.+-|+||++.. .+..||.++...++.++|.|+++++.+|..+|+..+||||+.+||..|++..
T Consensus 27 ~~ip~~~I~Rlar~~-Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 27 QGITKPAIRRLARRG-GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp GGSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 459999999999985 6899999999999999999999999999999999999999999999999865
No 25
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.45 E-value=6.9e-07 Score=66.07 Aligned_cols=66 Identities=18% Similarity=0.191 Sum_probs=62.3
Q ss_pred CCCCChHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHh
Q 045847 86 NHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALR 152 (237)
Q Consensus 86 ~~~LPLARIKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~ 152 (237)
...||++-|++|.++ -++..+|.||...++.-.|.-+.+++++|...++.+||+||+.+||..|++
T Consensus 4 ~s~lp~~~v~~iaes-~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 4 GSSISAESMKVIAES-IGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp SCCCCHHHHHHHHHH-TTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cccCCHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 468999999999999 567899999999999999999999999999999999999999999999974
No 26
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=97.95 E-value=1.6e-05 Score=59.80 Aligned_cols=65 Identities=22% Similarity=0.275 Sum_probs=53.8
Q ss_pred CChHH-HHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhc
Q 045847 89 LPLAR-IKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRL 153 (237)
Q Consensus 89 LPLAR-IKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~ 153 (237)
+|..| ||.|.+.-..--.++.+|..++..|+|.|+..|...|..+|...||+||..+||.-|..-
T Consensus 7 ~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 7 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI 72 (77)
T ss_dssp HHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence 45555 455544322236899999999999999999999999999999999999999999998753
No 27
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.66 E-value=0.00016 Score=53.12 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=56.6
Q ss_pred HHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhc
Q 045847 93 RIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRL 153 (237)
Q Consensus 93 RIKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~ 153 (237)
.|.+|+|. -++..++.+++..+...++.++.+++..|...|...||+||+.+||..||+.
T Consensus 6 ~i~~iLk~-~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 6 VIMSILKE-LNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHH-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHH-CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 57888988 7789999999999999999999999999999999999999999999999975
No 28
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.00011 Score=59.43 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=51.7
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcCC
Q 045847 102 EEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDE 155 (237)
Q Consensus 102 pDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~d 155 (237)
.+|++||.++...+..+.|.|++.++..|..+|+..+||||+..||..|+++..
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G 113 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 113 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTT
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCC
Confidence 788999999999999999999999999999999999999999999999998654
No 29
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=97.65 E-value=5e-05 Score=60.86 Aligned_cols=63 Identities=11% Similarity=0.046 Sum_probs=54.4
Q ss_pred HHHHhhcc---cccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcCCcc
Q 045847 94 IKKVMKSR---EEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELF 157 (237)
Q Consensus 94 IKKIMK~D---pDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~d~f 157 (237)
|-||++.. .+ ..||.++...++.+++-|+..++..+...|+..||+||+.+||..++++++.+
T Consensus 33 V~rIvke~gaer~-~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L 98 (113)
T 4dra_A 33 VGCLCEEVALDKE-MQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSL 98 (113)
T ss_dssp HHHHHHHHHHHHT-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHcC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHH
Confidence 44555532 12 34999999999999999999999999999999999999999999999998765
No 30
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=97.53 E-value=0.0001 Score=58.34 Aligned_cols=53 Identities=11% Similarity=0.052 Sum_probs=50.1
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcCCcc
Q 045847 105 KMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELF 157 (237)
Q Consensus 105 ~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~d~f 157 (237)
..+|.+++..++..++-|+..++..+...|+..||+||+.+||..|+++++.+
T Consensus 38 ~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l 90 (107)
T 3b0b_B 38 VLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSL 90 (107)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHH
Confidence 37999999999999999999999999999999999999999999999998654
No 31
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=97.46 E-value=0.00048 Score=56.65 Aligned_cols=77 Identities=18% Similarity=0.168 Sum_probs=57.4
Q ss_pred HHHHhhhhhhccCCCCChHHHHHHhhc----ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHH
Q 045847 74 SDIENATTESLRNHLLPLARIKKVMKS----REEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIAR 149 (237)
Q Consensus 74 ~eie~~~~~fk~~~~LPLARIKKIMK~----DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~ 149 (237)
.||..... .- .+-||.+.+-|+++. -..--.++.+|..++..|+|.|+-.|...|+.+|...||.||...||..
T Consensus 50 rEIr~yQk-st-~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqL 127 (136)
T 1tzy_C 50 REIRRYQK-ST-ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 127 (136)
T ss_dssp HHHHHHHH-CC-SCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHHHhhc-ch-hhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHH
Confidence 34544432 22 344555444444432 1122589999999999999999999999999999999999999999998
Q ss_pred HHh
Q 045847 150 ALR 152 (237)
Q Consensus 150 AV~ 152 (237)
|..
T Consensus 128 a~r 130 (136)
T 1tzy_C 128 ARR 130 (136)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 32
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=97.43 E-value=0.0004 Score=52.73 Aligned_cols=48 Identities=29% Similarity=0.230 Sum_probs=45.8
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHh
Q 045847 105 KMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALR 152 (237)
Q Consensus 105 ~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~ 152 (237)
-.++++|..++..|+|.|+-.|...|..+|...||.||..+||.-|..
T Consensus 26 ~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 26 FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 489999999999999999999999999999999999999999998865
No 33
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=97.41 E-value=0.00025 Score=59.63 Aligned_cols=78 Identities=22% Similarity=0.166 Sum_probs=54.3
Q ss_pred HHHHHhhhhhhccCCCCChHHHHHHhhcc-c-----ccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHH
Q 045847 73 KSDIENATTESLRNHLLPLARIKKVMKSR-E-----EVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCD 146 (237)
Q Consensus 73 ~~eie~~~~~fk~~~~LPLARIKKIMK~D-p-----DV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~D 146 (237)
+.||..... .- .+-||.+-+.|+++.= . .--.++.+|..++..|+|.|+..|.+.|+.+|...||.||..+|
T Consensus 64 LrEIR~yQk-St-eLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kD 141 (156)
T 3r45_A 64 LKEIRKLQK-ST-HLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKD 141 (156)
T ss_dssp -------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHH
T ss_pred HHHHHHhcc-cc-ccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHH
Confidence 667765543 22 4556665555555421 1 12489999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 045847 147 IARALR 152 (237)
Q Consensus 147 Ia~AV~ 152 (237)
|..|..
T Consensus 142 IqLArr 147 (156)
T 3r45_A 142 VQLARR 147 (156)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 34
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=97.41 E-value=0.00034 Score=54.77 Aligned_cols=49 Identities=22% Similarity=0.165 Sum_probs=45.7
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHh
Q 045847 104 VKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALR 152 (237)
Q Consensus 104 V~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~ 152 (237)
.-.++.+|..++..|+|.|+-.|...|..+|...||.||..+||..|..
T Consensus 50 ~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 50 PLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp -CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999998863
No 35
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.00045 Score=53.16 Aligned_cols=53 Identities=11% Similarity=0.008 Sum_probs=50.4
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcCCcc
Q 045847 105 KMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELF 157 (237)
Q Consensus 105 ~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~d~f 157 (237)
..+|.++...++..++-++..++..+...|+..||+||+.+||..++++++.+
T Consensus 31 ~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L 83 (90)
T 3v9r_A 31 IKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDL 83 (90)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHH
Confidence 46999999999999999999999999999999999999999999999998765
No 36
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=97.37 E-value=0.00037 Score=57.68 Aligned_cols=79 Identities=24% Similarity=0.233 Sum_probs=53.5
Q ss_pred HHHHHhhhh--hhccCCCCChHHH-HHHhhcc-c-ccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHH
Q 045847 73 KSDIENATT--ESLRNHLLPLARI-KKVMKSR-E-EVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDI 147 (237)
Q Consensus 73 ~~eie~~~~--~fk~~~~LPLARI-KKIMK~D-p-DV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DI 147 (237)
+.||..... ++- -..+|..|+ +.|...- . .--.++.+|..++..|+|.|+-.|.+.|+.+|...||.||..+||
T Consensus 48 LrEIR~yQkst~LL-IpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDi 126 (140)
T 3nqu_A 48 LKEIRKLQKSTHLL-IRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDV 126 (140)
T ss_dssp -----------CCC-SCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred HHHHHHhccccccc-cccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHH
Confidence 556654432 122 234555553 4444211 1 124899999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 045847 148 ARALR 152 (237)
Q Consensus 148 a~AV~ 152 (237)
..|..
T Consensus 127 qLArr 131 (140)
T 3nqu_A 127 QLARR 131 (140)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 37
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00023 Score=63.24 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhh-----------------hc-----cCCC---CCh-HHHH--------HHhhcccc
Q 045847 58 MLKQRQLVQSFWEQQKSDIENATTE-----------------SL-----RNHL---LPL-ARIK--------KVMKSREE 103 (237)
Q Consensus 58 ~~~~~q~L~~FW~~~~~eie~~~~~-----------------fk-----~~~~---LPL-ARIK--------KIMK~DpD 103 (237)
..+..+.|++=|.+.+++.++.++. ++ +... =+. .-++ ||.+. .+
T Consensus 97 ~~~~~~~~k~~~~~i~~ky~~~~~~gd~idl~tG~iv~dnGh~~~l~~~~~~~~~~~r~~~vLrD~i~i~~~RlaRr-gG 175 (235)
T 2l5a_A 97 HKLADENMRKVWSNIISKYESIEEQGDLVDLKTGEIVEDNGHIKTLTANNSTKDKRTKYTSVLRDIIDISDEEDGDK-GG 175 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCSCCCSSSSCCCCCCCCCCCSCCCCCGGGCCSSTHHHHHHHHHHHTCCTTSCC-TT
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCcccCCCCceeeeCcHHHHhhcCCCCCccchhHHHHHHHhhcccHHHHhhc-CC
Confidence 3467888999999999998886431 01 0000 011 1112 33333 57
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcC
Q 045847 104 VKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLD 154 (237)
Q Consensus 104 V~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~ 154 (237)
|+.||.++...+..+.|.|++.++..|..+|+..+||||+..||..|+++.
T Consensus 176 VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 176 VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999999854
No 38
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=97.25 E-value=0.00035 Score=57.85 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=52.5
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcCCcc-cchhh
Q 045847 105 KMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELF-DFLID 162 (237)
Q Consensus 105 ~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~d~f-dFL~D 162 (237)
..||.++...|+.+++-|+..|+..+...|++.||+||+.+||..++++++.+ ..|.+
T Consensus 38 ~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~ 96 (140)
T 3vh5_A 38 VLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQ 96 (140)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999766 44443
No 39
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=97.20 E-value=0.0009 Score=68.79 Aligned_cols=78 Identities=10% Similarity=0.061 Sum_probs=69.8
Q ss_pred hccCCCCChHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcCCcccchh
Q 045847 83 SLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFDFLI 161 (237)
Q Consensus 83 fk~~~~LPLARIKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~d~fdFL~ 161 (237)
-|..+.||++||.|.+ ..--..+|++.|++.+|..+|....++..-|.+.|...+++.|+..||..|+.+++.++-|.
T Consensus 99 ~~~~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~eL~~l~ 176 (1049)
T 3ksy_A 99 RRNPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDMF 176 (1049)
T ss_dssp CSSSCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCSSHHHHC
T ss_pred ccCCccccHHHHHHHh-hcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccCCHHHHHHH
Confidence 4457899999999999 44445699999999999999999999999999999999999999999999999999876554
No 40
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=97.19 E-value=0.0016 Score=49.61 Aligned_cols=67 Identities=9% Similarity=0.201 Sum_probs=60.7
Q ss_pred CCCCChHHHHHHhhcc--cccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHh
Q 045847 86 NHLLPLARIKKVMKSR--EEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALR 152 (237)
Q Consensus 86 ~~~LPLARIKKIMK~D--pDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~ 152 (237)
...||-.-|.||++.. .+-.+||.||..++++-.++||.+-..||...|+..+...|..+||.+..-
T Consensus 10 ~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~p 78 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLP 78 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 6789999999999965 567899999999999999999999999999999988889999999998764
No 41
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.04 E-value=0.0019 Score=48.75 Aligned_cols=68 Identities=12% Similarity=0.172 Sum_probs=60.5
Q ss_pred CCCCChHHHHHHhhcc--cccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhc
Q 045847 86 NHLLPLARIKKVMKSR--EEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRL 153 (237)
Q Consensus 86 ~~~LPLARIKKIMK~D--pDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~ 153 (237)
...||..=|.||++.. .+-.+|+++|.-++++-.++||.+-..||...|+..+...|...||.+..-+
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pq 75 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQ 75 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHH
Confidence 5679999999999964 5678999999999999999999999999999999889999999999986543
No 42
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=96.80 E-value=0.0052 Score=47.02 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=60.2
Q ss_pred hccCCCCChHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCcccHHHHHHHHhc
Q 045847 83 SLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDG-KRRTLQRCDIARALRL 153 (237)
Q Consensus 83 fk~~~~LPLARIKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~-kRKTLq~~DIa~AV~~ 153 (237)
|+ ...||-+.|||||..=-+ ..|+.+..++++-.+-+||.+|+..|....... .+.-|+..||.+|..+
T Consensus 12 ~R-rs~f~k~~vKrl~~~~~~-~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rr 81 (89)
T 1bh9_B 12 YR-RSAFPKAAIKRLIQSITG-TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRR 81 (89)
T ss_dssp HH-HCCCCHHHHHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHH
T ss_pred HH-HhcCCHHHHHHHHHHHcC-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Confidence 77 789999999999986543 478899999999999999999999999998754 5669999999999875
No 43
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=96.44 E-value=0.0067 Score=49.43 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=52.6
Q ss_pred HHHHHhh-cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHh
Q 045847 93 RIKKVMK-SREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALR 152 (237)
Q Consensus 93 RIKKIMK-~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~ 152 (237)
-|.||+| ..||. -||.+|.-++.--.+-+.+.|+.+|...+..++|+||+..||..||.
T Consensus 41 YIyKVLKQVhpd~-gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 41 YVYKVLKQVHPDT-GISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp HHHHHHHHHCTTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHhCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 4777887 46775 48999999999999999999999999999999999999999999985
No 44
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=95.97 E-value=0.015 Score=49.36 Aligned_cols=59 Identities=19% Similarity=0.199 Sum_probs=53.7
Q ss_pred HHHHHhhc-ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHh
Q 045847 93 RIKKVMKS-REEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALR 152 (237)
Q Consensus 93 RIKKIMK~-DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~ 152 (237)
-|+|++|. .||. -||.+|...+.--+.-+.+.|+.+|...+..++|+||+..||..||.
T Consensus 8 yi~kvLkqv~p~~-~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avr 67 (192)
T 2jss_A 8 YIYKVLKQTHPDT-GISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 67 (192)
T ss_dssp HHHHHHHHHCSSC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHH
T ss_pred HHHHHHcccCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 48888884 5775 49999999999999999999999999999999999999999999996
No 45
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.017 Score=51.38 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=58.5
Q ss_pred CCCChHH-HHHHhhccc---ccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcCC
Q 045847 87 HLLPLAR-IKKVMKSRE---EVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDE 155 (237)
Q Consensus 87 ~~LPLAR-IKKIMK~Dp---DV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~d 155 (237)
..||..| |+.|.+.-. +--...++|..++--|+|.|+-.|-..+..||...||-||...||.-|-.-..
T Consensus 13 ~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 13 SKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp SCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred cCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 4688888 567776432 24588999999999999999999999999999999999999999999876443
No 46
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=95.71 E-value=0.021 Score=46.37 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=52.3
Q ss_pred HHHHHhh-cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHh
Q 045847 93 RIKKVMK-SREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALR 152 (237)
Q Consensus 93 RIKKIMK-~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~ 152 (237)
-|.||+| ..||. .||.+|.-++.--.+-+.+.|+.+|...+..++|+||+..||..||.
T Consensus 38 YIyKVLKQVhpd~-gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 38 YIYTVLKQVHPDT-GISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR 97 (123)
T ss_dssp HHHHHHHHHCTTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHHHhCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHH
Confidence 4777777 46775 47999999999999999999999999999999999999999999985
No 47
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=94.84 E-value=0.094 Score=40.39 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=48.9
Q ss_pred CChHHHHHHhhcc--cccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhC-------CCCcccHHHHHHHH
Q 045847 89 LPLARIKKVMKSR--EEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDG-------KRRTLQRCDIARAL 151 (237)
Q Consensus 89 LPLARIKKIMK~D--pDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~-------kRKTLq~~DIa~AV 151 (237)
+|..-|-||++.. .+-.+|++||.-+++|-.++||.+-..||....+.. +...|+-.||.+..
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEkia 73 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERIV 73 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHHHH
Confidence 5777788888854 666899999999999999999999999998776542 23578888887654
No 48
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=91.69 E-value=0.66 Score=34.50 Aligned_cols=67 Identities=15% Similarity=0.216 Sum_probs=57.2
Q ss_pred CCCChHHHHHHhhc-ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcC
Q 045847 87 HLLPLARIKKVMKS-REEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLD 154 (237)
Q Consensus 87 ~~LPLARIKKIMK~-DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~ 154 (237)
..|+-.++..++|. ||. ..+..++--++..-++-||...+..|...|+..|..||...||.-.+++.
T Consensus 4 ~vl~k~~L~~Lv~~idp~-~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~ 71 (76)
T 1h3o_B 4 MVLTKKKLQDLVREVDPN-EQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQ 71 (76)
T ss_dssp CSSCHHHHHHHHHHHCSS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhh
Confidence 34566677777764 554 57788999999999999999999999999999999999999999888764
No 49
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=75.17 E-value=3.8 Score=32.85 Aligned_cols=73 Identities=16% Similarity=0.227 Sum_probs=50.6
Q ss_pred CCCChHH-HHHHhhcc---cccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhC---CCCccc---HHHHHHHHhcCCc
Q 045847 87 HLLPLAR-IKKVMKSR---EEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDG---KRRTLQ---RCDIARALRLDEL 156 (237)
Q Consensus 87 ~~LPLAR-IKKIMK~D---pDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~---kRKTLq---~~DIa~AV~~~d~ 156 (237)
..+|..| ||.|.+.- ...-...++|..++-.|+|.|+-.|-..++.||... |-+.|+ |+.+..+++
T Consensus 3 ~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~---- 78 (121)
T 2ly8_A 3 SKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLK---- 78 (121)
T ss_dssp SCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHH----
T ss_pred CccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHH----
Confidence 3578888 45566531 223588999999999999999999999999998764 334444 455555543
Q ss_pred ccchhhcC
Q 045847 157 FDFLIDFV 164 (237)
Q Consensus 157 fdFL~DIV 164 (237)
+||.+|+
T Consensus 79 -~~l~~i~ 85 (121)
T 2ly8_A 79 -SFLESVI 85 (121)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHHH
Confidence 4555544
No 50
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=69.19 E-value=5.7 Score=27.69 Aligned_cols=42 Identities=12% Similarity=0.002 Sum_probs=35.6
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCcccHHHHHHHHhc
Q 045847 112 PAVFAKACEMF----IMELTLRAWLQTEDGKRRTLQRCDIARALRL 153 (237)
Q Consensus 112 pvliAKAtELF----I~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~ 153 (237)
.-.+++.||=| |..|+.+|...|...++..|+..|+..|+.+
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 45666777766 7889999999999999999999999999975
No 51
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=63.63 E-value=9.2 Score=27.06 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHHhcC
Q 045847 123 IMELTLRAWLQTEDGKRRTLQRCDIARALRLD 154 (237)
Q Consensus 123 I~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~ 154 (237)
|..|+.+|...|...++..|+..|+..|+.+.
T Consensus 37 i~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 37 IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 45677788888888889999999999999864
No 52
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=59.81 E-value=10 Score=27.46 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHHhc
Q 045847 123 IMELTLRAWLQTEDGKRRTLQRCDIARALRL 153 (237)
Q Consensus 123 I~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~ 153 (237)
|..|+.+|...|....+..|+..|+..|+.+
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~ 80 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAK 80 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 5667888888888888999999999999875
No 53
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=59.31 E-value=9.4 Score=26.79 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHHhcC
Q 045847 123 IMELTLRAWLQTEDGKRRTLQRCDIARALRLD 154 (237)
Q Consensus 123 I~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~ 154 (237)
|..|+.+|...|...++..|+..|+..|+.+.
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~ 71 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTV 71 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 56778888888888889999999999998764
No 54
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=54.97 E-value=11 Score=27.11 Aligned_cols=42 Identities=12% Similarity=0.163 Sum_probs=34.6
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCcccHHHHHHHHhc
Q 045847 112 PAVFAKACEMF----IMELTLRAWLQTEDGKRRTLQRCDIARALRL 153 (237)
Q Consensus 112 pvliAKAtELF----I~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~ 153 (237)
.-.+++.|+=| |..|+.+|...|...++..|+..|+..|+.+
T Consensus 25 l~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~ 70 (88)
T 3vlf_B 25 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 70 (88)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 45566677766 7888888888888888999999999999975
No 55
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=49.49 E-value=50 Score=27.75 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=48.7
Q ss_pred hHHHHHHhhcc--c--ccccccccHHHHHHHHHH------HHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcC
Q 045847 91 LARIKKVMKSR--E--EVKMTTADSPAVFAKACE------MFIMELTLRAWLQTEDGKRRTLQRCDIARALRLD 154 (237)
Q Consensus 91 LARIKKIMK~D--p--DV~~ISaEApvliAKAtE------LFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~ 154 (237)
..-+..|++.- . .-..++.++.-.+++.+. ..+..+..+|+..|...++.+|+.+||..|+...
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 35556666532 1 124678888888888887 5777888999999988889999999999998765
No 56
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=45.02 E-value=31 Score=25.48 Aligned_cols=41 Identities=15% Similarity=0.103 Sum_probs=33.2
Q ss_pred HHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 045847 92 ARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQ 133 (237)
Q Consensus 92 ARIKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~ 133 (237)
.||..||+- -+++.++.|+..+++-|||.=+..|...-...
T Consensus 10 kri~~I~~k-~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~ 50 (75)
T 1h3o_A 10 RRILEIGKK-HGITELHPDVVSYVSHATQQRLQNLVEKISET 50 (75)
T ss_dssp HHHHHHHHT-TTCCEECTTHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHh-cCCCcCChhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 688889977 88999999999999999999777666654333
No 57
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=44.81 E-value=70 Score=26.79 Aligned_cols=48 Identities=13% Similarity=-0.011 Sum_probs=33.6
Q ss_pred cccccHHHHHHHHHH-------HHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhc
Q 045847 106 MTTADSPAVFAKACE-------MFIMELTLRAWLQTEDGKRRTLQRCDIARALRL 153 (237)
Q Consensus 106 ~ISaEApvliAKAtE-------LFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~ 153 (237)
.++.++.-++...+. -=+..+...|...|...++.+|+..||..|+..
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 566666655555443 234466667777777889999999999998864
No 58
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=44.45 E-value=66 Score=27.30 Aligned_cols=65 Identities=23% Similarity=0.247 Sum_probs=47.5
Q ss_pred CChHHHHHHhhcc--cccccccccHHHHHHHHHH----HHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhc
Q 045847 89 LPLARIKKVMKSR--EEVKMTTADSPAVFAKACE----MFIMELTLRAWLQTEDGKRRTLQRCDIARALRL 153 (237)
Q Consensus 89 LPLARIKKIMK~D--pDV~~ISaEApvliAKAtE----LFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~ 153 (237)
++..-++.|++.- ..-..++.++.-.+++.+. -.+..+..+|...|...+++.|+.+||..|+..
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 3455566666621 1123578888888888876 355667778888888889999999999999975
No 59
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=44.30 E-value=36 Score=28.22 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=44.1
Q ss_pred CCChHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHH
Q 045847 88 LLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDI 147 (237)
Q Consensus 88 ~LPLARIKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DI 147 (237)
.++.++++|+++.--+....-.++--+.. -.+-=+-+|..-|...|..++|..|...||
T Consensus 2 vm~~~~~e~lFR~aa~LdvdK~d~~r~~d-~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 2 LMKVAEFERLFRQAAGLDVDKNDLKRVSD-FLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp CSCHHHHHHHHHHHHCCCCCGGGHHHHHH-HHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred cCCHHHHHHHHHHHhccCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 36788899999987776666555544443 444446688888999999999999998774
No 60
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=42.94 E-value=56 Score=30.96 Aligned_cols=51 Identities=10% Similarity=0.055 Sum_probs=38.8
Q ss_pred ccccccHHHHHHHHH-------------HHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcCC
Q 045847 105 KMTTADSPAVFAKAC-------------EMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDE 155 (237)
Q Consensus 105 ~~ISaEApvliAKAt-------------ELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~d 155 (237)
..++.+|...+.+.+ .--+..|...|...|...++..|+.+||..|+....
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~~~ 376 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKMAK 376 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHhhh
Confidence 357777776666533 445667778888888889999999999999997643
No 61
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=36.06 E-value=86 Score=26.17 Aligned_cols=65 Identities=11% Similarity=-0.007 Sum_probs=46.5
Q ss_pred hHHHHHHhhcc----cccccccccHHHHHHHHHH------HHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcCC
Q 045847 91 LARIKKVMKSR----EEVKMTTADSPAVFAKACE------MFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDE 155 (237)
Q Consensus 91 LARIKKIMK~D----pDV~~ISaEApvliAKAtE------LFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~d 155 (237)
..-++.|++.- -....++.++...++..+. ..+..+...++..+...++..|+.+||..|+....
T Consensus 199 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 199 AEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 34566666531 1113577788888877776 34567888899888888889999999999887653
No 62
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.93 E-value=29 Score=32.43 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=35.2
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCcccHHHHHHHHhc
Q 045847 112 PAVFAKACEMF----IMELTLRAWLQTEDGKRRTLQRCDIARALRL 153 (237)
Q Consensus 112 pvliAKAtELF----I~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~ 153 (237)
.-.+++.|+=| |..|+.+|...|...+|..|+..|+..|+.+
T Consensus 368 l~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 368 LDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 45667777654 7889999999999999999999999999864
No 63
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=33.18 E-value=43 Score=27.44 Aligned_cols=43 Identities=16% Similarity=0.023 Sum_probs=33.1
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcC
Q 045847 112 PAVFAKACEM----FIMELTLRAWLQTEDGKRRTLQRCDIARALRLD 154 (237)
Q Consensus 112 pvliAKAtEL----FI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~ 154 (237)
...+++.++- -|..|+.+|...|...++..|+.+|+..|+...
T Consensus 212 ~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 212 LEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 4445554443 467788889888988999999999999999753
No 64
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=31.80 E-value=23 Score=25.99 Aligned_cols=32 Identities=16% Similarity=0.065 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHhhc
Q 045847 62 RQLVQSFWEQQKSDIENATTESLRNHLLPLARIKKVMKS 100 (237)
Q Consensus 62 ~q~L~~FW~~~~~eie~~~~~fk~~~~LPLARIKKIMK~ 100 (237)
...++-||.=..- .+++ --.||+.||..++|.
T Consensus 3 ee~~~v~w~yI~G---MLtN----~~slpl~RIh~mLkm 34 (74)
T 1ldd_A 3 ELTLQRSLPFIEG---MLTN----LGAMKLHKIHSFLKI 34 (74)
T ss_dssp HHHHHHHHHHHHH---HHHH----HCSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHhc----CCCCCHHHHHHHHHH
Confidence 4568899987553 2333 457999999999996
No 65
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=27.89 E-value=61 Score=26.31 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=31.9
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhhCCCCcccHHHHHHHHhc
Q 045847 112 PAVFAKACEM----FIMELTLRAWLQTEDGKRRTLQRCDIARALRL 153 (237)
Q Consensus 112 pvliAKAtEL----FI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~ 153 (237)
..+++..++= =|..++.+|...|...+++.|+.+|+..|+..
T Consensus 206 ~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 206 AAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDK 251 (257)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 4455555443 35667788888888888999999999999875
No 66
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.17 E-value=55 Score=30.55 Aligned_cols=42 Identities=12% Similarity=-0.015 Sum_probs=34.3
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhhCCCCcccHHHHHHHHhc
Q 045847 112 PAVFAKACEM----FIMELTLRAWLQTEDGKRRTLQRCDIARALRL 153 (237)
Q Consensus 112 pvliAKAtEL----FI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~ 153 (237)
.-.+++.|+= =|..|+.+|...|...+|..|+.+|+..|+.+
T Consensus 343 l~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 343 LRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 4556666653 36788999999998899999999999999864
No 67
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.96 E-value=59 Score=30.84 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=34.2
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCcccHHHHHHHHhc
Q 045847 112 PAVFAKACEMF----IMELTLRAWLQTEDGKRRTLQRCDIARALRL 153 (237)
Q Consensus 112 pvliAKAtELF----I~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~ 153 (237)
.-.+++.|+=| |..|+.+|...|...+|..|+.+|+..|+.+
T Consensus 377 l~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 377 LETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 45566666543 6788999999998999999999999999864
No 68
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.56 E-value=60 Score=30.36 Aligned_cols=42 Identities=19% Similarity=0.161 Sum_probs=33.3
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCcccHHHHHHHHhc
Q 045847 112 PAVFAKACEMF----IMELTLRAWLQTEDGKRRTLQRCDIARALRL 153 (237)
Q Consensus 112 pvliAKAtELF----I~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~ 153 (237)
.-.+++.|+=| |..|+.+|...|...++..|+.+|+..|+.+
T Consensus 376 l~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 376 FEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 44556655533 6788899999998899999999999999875
No 69
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.19 E-value=59 Score=30.40 Aligned_cols=42 Identities=12% Similarity=0.197 Sum_probs=32.4
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHhhCCCCcccHHHHHHHHhcC
Q 045847 113 AVFAKACEMF----IMELTLRAWLQTEDGKRRTLQRCDIARALRLD 154 (237)
Q Consensus 113 vliAKAtELF----I~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~ 154 (237)
-.+++.|+=| |..|+.+|...|...+++.|+.+|+..|+.+.
T Consensus 377 ~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 377 QELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 3455555432 67888888888888899999999999999753
No 70
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=23.89 E-value=75 Score=25.71 Aligned_cols=40 Identities=28% Similarity=0.249 Sum_probs=30.8
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCcccHHHHHHHH
Q 045847 112 PAVFAKACEMF----IMELTLRAWLQTEDGKRRTLQRCDIARAL 151 (237)
Q Consensus 112 pvliAKAtELF----I~eLt~~A~~~A~~~kRKTLq~~DIa~AV 151 (237)
...++..++=| |..++.+|...|...+++.|+.+|+..|+
T Consensus 210 ~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 210 LALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 55667666643 45677788888888888899999999886
No 71
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.99 E-value=63 Score=30.84 Aligned_cols=42 Identities=12% Similarity=0.163 Sum_probs=34.4
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCcccHHHHHHHHhc
Q 045847 112 PAVFAKACEMF----IMELTLRAWLQTEDGKRRTLQRCDIARALRL 153 (237)
Q Consensus 112 pvliAKAtELF----I~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~ 153 (237)
.-.+++.|+=| |..|+.+|...|...+|+.|+..|+..|+.+
T Consensus 404 l~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 404 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 45567776644 6788999999998889999999999999865
No 72
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=21.40 E-value=87 Score=25.91 Aligned_cols=40 Identities=28% Similarity=0.249 Sum_probs=29.9
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCcccHHHHHHHH
Q 045847 112 PAVFAKACEMF----IMELTLRAWLQTEDGKRRTLQRCDIARAL 151 (237)
Q Consensus 112 pvliAKAtELF----I~eLt~~A~~~A~~~kRKTLq~~DIa~AV 151 (237)
..+++..++=| |..+..+|...|...++..|+.+|+.+|+
T Consensus 234 ~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 234 LALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 55666665543 45667788888877788899999999886
No 73
>2jxf_A NS4B(40-69), genome polyprotein; membrane associated segment, acetylation, apoptosis, ATP- binding, capsid protein, cytoplasm, endoplasmic reticulum; NMR {Synthetic}
Probab=20.45 E-value=55 Score=20.41 Aligned_cols=12 Identities=25% Similarity=0.620 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHH
Q 045847 63 QLVQSFWEQQKS 74 (237)
Q Consensus 63 q~L~~FW~~~~~ 74 (237)
+.|+.||.+.|=
T Consensus 5 ~kle~fW~khMw 16 (30)
T 2jxf_A 5 QKLEVFWAKHMW 16 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 578999998764
No 74
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=20.30 E-value=2.8e+02 Score=23.23 Aligned_cols=49 Identities=10% Similarity=0.173 Sum_probs=39.7
Q ss_pred cccccHHHHHHHHH------------HHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHhcC
Q 045847 106 MTTADSPAVFAKAC------------EMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLD 154 (237)
Q Consensus 106 ~ISaEApvliAKAt------------ELFI~eLt~~A~~~A~~~kRKTLq~~DIa~AV~~~ 154 (237)
.++.++.-.++..+ =.++..+...|+..|...++..|+.+||..++...
T Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 214 SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 57778888887777 24567888899998888888999999999988754
No 75
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=20.24 E-value=63 Score=27.36 Aligned_cols=59 Identities=8% Similarity=0.097 Sum_probs=45.0
Q ss_pred CCChHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccHHHH
Q 045847 88 LLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDI 147 (237)
Q Consensus 88 ~LPLARIKKIMK~DpDV~~ISaEApvliAKAtELFI~eLt~~A~~~A~~~kRKTLq~~DI 147 (237)
.++++++.|+++.--+....-.++-- +.--.+-=+-+|..-|...|..++|..|...||
T Consensus 26 vmg~~kferlFR~aagLDvdK~d~kr-~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 26 PKGFDKLDHYFRTELDIDLTDETIEL-LLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp CTTHHHHHHHHHHHHCCCCCHHHHHH-HHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred cCChHHHHHHHHHHhccCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 67999999999987776666555444 344444456678888999999999999998774
Done!