BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045851
(473 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (100k) Structure.
pdb|1XAD|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (150k) Structure
Length = 345
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 62/306 (20%), Positives = 118/306 (38%), Gaps = 52/306 (16%)
Query: 64 KKYENLVRKLREERNSWYVRKHYKMEA------IVDELKDELSKERKSRKQIDFL----- 112
K++ R+LR E+ +RK + A + + L D +++ +DF+
Sbjct: 75 PKWDQNPRELRPEKGLLSIRKQLDLFANLRPVKVFESLSDASPLKKEYIDNVDFVIVREL 134
Query: 113 -NSKFVNE---LAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEERNMLQLAEI 168
+ E +++AE+ + E E+ AR E ++ R ++ N+L++ E
Sbjct: 135 TGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLEVGEF 194
Query: 169 WREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAELIIRAVKLL 228
WR+ ++ +ALEH+Y V+ + L+ + A DV ++
Sbjct: 195 WRKTVEEVGRGYPDVALEHQY------VDAMAMHLVRSPARFDV--------VVTGNIFG 240
Query: 229 NIQDSDEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHHIVSPEVND 288
+I + V P S + L +G EP+ +P D + I +P
Sbjct: 241 DIL--SDLASVLPGSLGLLPS-ASLGRGTPV----FEPVHGSAP--DIAGKGIANPTAAI 291
Query: 289 FDNNHVLKHLNGFIDCNNGLKKDSRSWECARHSEDQGSRCSVGGRDPSINSGGQGKVASK 348
+L+H G + E AR ED ++ + P + G G A
Sbjct: 292 LSAAMMLEHAFGLV-------------ELARKVEDAVAKALLETPPPDLG-GSAGTEAFT 337
Query: 349 STIMHH 354
+T++ H
Sbjct: 338 ATVLRH 343
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With Nad+: Ligand-Induced Loop-Closing And Mechanism For
Cofactor Specificity
pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
Structure
pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
Structure
pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With The Inhibitor And Nad+
Length = 345
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 65/306 (21%), Positives = 116/306 (37%), Gaps = 52/306 (16%)
Query: 64 KKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKS------RKQIDFL----- 112
K++ L RK+R E +RK + A + K ER S + +D L
Sbjct: 75 PKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVREL 134
Query: 113 -NSKFVNE---LAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEERNMLQLAEI 168
+ E +++AE+ + E E+ AR E ++ R ++ N+L++ E
Sbjct: 135 TGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLEVGEF 194
Query: 169 WREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAELIIRAVKLL 228
WR+ ++ +ALEH+Y V+ + L+ + A DV ++
Sbjct: 195 WRKTVEEVGRGYPDVALEHQY------VDAMAMHLVRSPARFDV--------VVTGNIFG 240
Query: 229 NIQDSDEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHHIVSPEVND 288
+I + V P S + L +G EP+ +P D + I +P
Sbjct: 241 DIL--SDLASVLPGSLGLLPS-ASLGRGTPV----FEPVHGSAP--DIAGKGIANPTAAI 291
Query: 289 FDNNHVLKHLNGFIDCNNGLKKDSRSWECARHSEDQGSRCSVGGRDPSINSGGQGKVASK 348
+L+H G + E AR ED ++ + P + G G A
Sbjct: 292 LSAAMMLEHAFGLV-------------ELARKVEDAVAKALLETPPPDLG-GSAGTEAFT 337
Query: 349 STIMHH 354
+T++ H
Sbjct: 338 ATVLRH 343
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Gly
Length = 345
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 65/306 (21%), Positives = 116/306 (37%), Gaps = 52/306 (16%)
Query: 64 KKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSR------KQIDFL----- 112
K++ L RK+R E +RK + A + K ER S + +D L
Sbjct: 75 PKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVREL 134
Query: 113 -NSKFVNE---LAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEERNMLQLAEI 168
+ E +++AE+ + E E+ AR E ++ R ++ N+L++ E
Sbjct: 135 TGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEGARKRRKHVVSVDKANVLEVGEF 194
Query: 169 WREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAELIIRAVKLL 228
WR+ ++ +ALEH+Y V+ + L+ + A DV ++
Sbjct: 195 WRKTVEEVGRGYPDVALEHQY------VDAMAMHLVRSPARFDV--------VVTGNIFG 240
Query: 229 NIQDSDEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHHIVSPEVND 288
+I + V P S + L +G EP+ +P D + I +P
Sbjct: 241 DIL--SDLASVLPGSLGLLP-SASLGRGTPV----FEPVHGSAP--DIAGKGIANPTAAI 291
Query: 289 FDNNHVLKHLNGFIDCNNGLKKDSRSWECARHSEDQGSRCSVGGRDPSINSGGQGKVASK 348
+L+H G + E AR ED ++ + P + G G A
Sbjct: 292 LSAAMMLEHAFGLV-------------ELARKVEDAVAKALLETPPPDLG-GSAGTEAFT 337
Query: 349 STIMHH 354
+T++ H
Sbjct: 338 ATVLRH 343
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate
Dehydrogenase From Thermus Thermophilus Hb8 : Its
Thermostability And Structure
Length = 345
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 115/308 (37%), Gaps = 56/308 (18%)
Query: 64 KKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSR------KQIDFL----- 112
K++ L RK+R E +RK + A + K ER S + +D L
Sbjct: 75 PKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVREL 134
Query: 113 -NSKFVNE---LAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEERNMLQLAEI 168
+ E +++AE+ + E E+ AR E ++ R ++ N+L++ E
Sbjct: 135 TGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEVARKRRKHVVSVDKANVLEVGEF 194
Query: 169 WREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAELIIRAVKLL 228
WR+ ++ +ALEH+Y V+ + L+ + A DV+
Sbjct: 195 WRKTVEEVGRGYPDVALEHQY------VDAMAMHLVRSPARFDVVVTG------------ 236
Query: 229 NIQDS--DEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHHIVSPEV 286
NI + V P S + L +G EP+ +P D + I +P
Sbjct: 237 NIFGDILSDLASVLPGSLGLLP-SASLGRGTPV----FEPVHGSAP--DIAGKGIANPTA 289
Query: 287 NDFDNNHVLKHLNGFIDCNNGLKKDSRSWECARHSEDQGSRCSVGGRDPSINSGGQGKVA 346
+L+H G + E AR ED ++ + P + G G A
Sbjct: 290 AILSAAMMLEHAFGLV-------------ELARKVEDAVAKALLETPPPDLG-GSAGTEA 335
Query: 347 SKSTIMHH 354
+T++ H
Sbjct: 336 FTATVLRH 343
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase
pdb|1OSJ|B Chain B, Structure Of 3-isopropylmalate Dehydrogenase
Length = 345
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 115/308 (37%), Gaps = 56/308 (18%)
Query: 64 KKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKS------RKQIDFL----- 112
K++ L RK+R E +RK + A + K ER S + +D L
Sbjct: 75 PKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVREL 134
Query: 113 -NSKFVNE---LAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEERNMLQLAEI 168
+ E +++AE+ + E E+ AR E ++ R ++ N+L++ E
Sbjct: 135 TGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELARKRRKHVVSVDKANVLEVGEF 194
Query: 169 WREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAELIIRAVKLL 228
WR+ ++ +ALEH+Y V+ + L+ + A DV+
Sbjct: 195 WRKTVEEVGRGYPDVALEHQY------VDAMAMHLVRSPARFDVVVTG------------ 236
Query: 229 NIQDS--DEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHHIVSPEV 286
NI + V P S + L +G EP+ +P D + I +P
Sbjct: 237 NIFGDILSDLASVLPGSLGLLPS-ASLGRGTPV----FEPVHGSAP--DIAGKGIANPTA 289
Query: 287 NDFDNNHVLKHLNGFIDCNNGLKKDSRSWECARHSEDQGSRCSVGGRDPSINSGGQGKVA 346
+L+H G + E AR ED ++ + P + G G A
Sbjct: 290 AILSAAMMLEHAFGLV-------------ELARKVEDAVAKALLETPPPDLG-GSAGTEA 335
Query: 347 SKSTIMHH 354
+T++ H
Sbjct: 336 FTATVLRH 343
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
pdb|1GC8|B Chain B, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
Length = 345
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 115/308 (37%), Gaps = 56/308 (18%)
Query: 64 KKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSR------KQIDFL----- 112
K++ L RK+R E +RK + A + K ER S + +D L
Sbjct: 75 PKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVREL 134
Query: 113 -NSKFVNE---LAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEERNMLQLAEI 168
+ E +++AE+ + E E+ AR E ++ R ++ N+L++ E
Sbjct: 135 TGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEFARKRRKHVVSVDKANVLEVGEF 194
Query: 169 WREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAELIIRAVKLL 228
WR+ ++ +ALEH+Y V+ + L+ + A DV+
Sbjct: 195 WRKTVEEVGRGYPDVALEHQY------VDAMAMHLVRSPARFDVVVTG------------ 236
Query: 229 NIQDS--DEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHHIVSPEV 286
NI + V P S + L +G EP+ +P D + I +P
Sbjct: 237 NIFGDILSDLASVLPGSLGLLPS-ASLGRGTPV----FEPVHGSAP--DIAGKGIANPTA 289
Query: 287 NDFDNNHVLKHLNGFIDCNNGLKKDSRSWECARHSEDQGSRCSVGGRDPSINSGGQGKVA 346
+L+H G + E AR ED ++ + P + G G A
Sbjct: 290 AILSAAMMLEHAFGLV-------------ELARKVEDAVAKALLETPPPDLG-GSAGTEA 335
Query: 347 SKSTIMHH 354
+T++ H
Sbjct: 336 FTATVLRH 343
>pdb|2XDQ|B Chain B, Dark Operative Protochlorophyllide Oxidoreductase (Chln-
Chlb)2 Complex
Length = 511
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 61 SSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFL----NSKF 116
S +K +N++RK EE V +I+ E + D L N
Sbjct: 72 SQEKVVDNIIRKDTEEHPDLIVLTPTCTSSILQEDLQNFVRRASLSTTADVLLADVNHYR 131
Query: 117 VNELAKAESSAKQFMQYYEEEKRARQLLEESKT 149
VNEL A+ + +Q +Q+Y ++ R + L SKT
Sbjct: 132 VNELQAADRTLEQIVQFYIDKARRQGTLGTSKT 164
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Apo Enzyme
pdb|2Y40|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y40|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y41|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y41|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y42|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|4F7I|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
Length = 359
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 21/165 (12%)
Query: 64 KKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKS------RKQIDFL----- 112
K++ L RK+R E +RK + A + K ER S + +D L
Sbjct: 78 PKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVREL 137
Query: 113 -NSKFVNE---LAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEERNMLQLAEI 168
+ E +++AE+ + E E+ AR E ++ R ++ N+L++ E
Sbjct: 138 TGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLEVGEF 197
Query: 169 WREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVM 213
WR+ ++ +ALEH+Y V+ + L+ + A DV+
Sbjct: 198 WRKTVEEVGRGYPDVALEHQY------VDAMAMHLVRSPARFDVV 236
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable
Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus
Thermophilus At 2.2 Angstroms Resolution
Length = 345
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 115/306 (37%), Gaps = 52/306 (16%)
Query: 64 KKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKS------RKQIDFL----- 112
K++ L RK+ E +RK + A + K ER S + +D L
Sbjct: 75 PKWDGLPRKISPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVREL 134
Query: 113 -NSKFVNE---LAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEERNMLQLAEI 168
+ E +++AE+ + E E+ AR E ++ R ++ N+L++ E
Sbjct: 135 TGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLEVGEF 194
Query: 169 WREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAELIIRAVKLL 228
WR+ ++ +ALEH+Y V+ + L+ + A DV ++
Sbjct: 195 WRKTVEEVGRGYPDVALEHQY------VDAMAMHLVRSPARFDV--------VVTGNIFG 240
Query: 229 NIQDSDEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHHIVSPEVND 288
+I + V P S + L +G EP+ +P D + I +P
Sbjct: 241 DIL--SDLASVLPGSLGLLPS-ASLGRGTPV----FEPVHGSAP--DIAGKGIANPTAAI 291
Query: 289 FDNNHVLKHLNGFIDCNNGLKKDSRSWECARHSEDQGSRCSVGGRDPSINSGGQGKVASK 348
+L+H G + E AR ED ++ + P + G G A
Sbjct: 292 LSAAMMLEHAFGLV-------------ELARKVEDAVAKALLETPPPDLG-GSAGTEAFT 337
Query: 349 STIMHH 354
+T++ H
Sbjct: 338 ATVLRH 343
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
pdb|1DR8|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
Length = 344
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 21/165 (12%)
Query: 64 KKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKS------RKQIDFL----- 112
K++ L RK+R E +RK + A + K ER S + +D L
Sbjct: 75 PKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVREL 134
Query: 113 -NSKFVNE---LAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEERNMLQLAEI 168
+ E +++AE+ + E E+ AR E ++ R ++ N+L++ E
Sbjct: 135 TGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELARKRRKHVVSVDKANVLEVGEF 194
Query: 169 WREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVM 213
WR+ ++ +ALEH+Y V+ + L+ + A DV+
Sbjct: 195 WRKTVEEVGRGYPDVALEHQY------VDAMAMHLVRSPARFDVV 233
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
pdb|1DR0|B Chain B, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
Length = 346
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 21/165 (12%)
Query: 64 KKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKS------RKQIDFL----- 112
K++ L RK+R E +RK + A + K ER S + +D L
Sbjct: 75 PKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVREL 134
Query: 113 -NSKFVNE---LAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEERNMLQLAEI 168
+ E +++AE+ + E E+ AR E ++ R ++ N+L++ E
Sbjct: 135 TGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELARKRRKHVVSVDKANVLEVGEF 194
Query: 169 WREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVM 213
WR+ ++ +ALEH+Y V+ + L+ + A DV+
Sbjct: 195 WRKTVEEVGRGYPDVALEHQY------VDAMAMHLVRSPARFDVV 233
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
pdb|1DPZ|B Chain B, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
Length = 349
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 21/165 (12%)
Query: 64 KKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKS------RKQIDFL----- 112
K++ L RK+R E +RK + A + K ER S + +D L
Sbjct: 75 PKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVREL 134
Query: 113 -NSKFVNE---LAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEERNMLQLAEI 168
+ E +++AE+ + E E+ AR E ++ R ++ N+L++ E
Sbjct: 135 TGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELARKRRKHVVSVDKANVLEVGEF 194
Query: 169 WREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVM 213
WR+ ++ +ALEH+Y V+ + L+ + A DV+
Sbjct: 195 WRKTVEEVGRGYPDVALEHQY------VDAMAMHLVRSPARFDVV 233
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 84/220 (38%), Gaps = 37/220 (16%)
Query: 135 EEEKRARQLLEESKTMRIREEVEEERNMLQLAEIWREERVQMKLVDAKLALEHKYSQINK 194
E E+ AR E ++ R ++ N+L++ E WR+ ++ +ALEH+Y
Sbjct: 159 EVERVARVAFEAARKRRKHVVSVDKANVLEVGEFWRKTVEEVGRGYPDVALEHQY----- 213
Query: 195 LVEELENFLMSNAATLDVMALRKAELIIRAVKLLNIQDSDEFEYVAPASDSIFSIFEELR 254
V+ + L+ + A DV ++ +I + V P S + L
Sbjct: 214 -VDAMAMHLVRSPARFDV--------VVTGNIFGDIL--SDLASVLPGSLGLLPS-ASLG 261
Query: 255 QGVDAREMEVEPLTNYSPIYDASNHHIVSPEVNDFDNNHVLKHLNGFIDCNNGLKKDSRS 314
+G EP+ +P D + I +P +L+H G +
Sbjct: 262 RGTPV----FEPVHGSAP--DIAGKGIANPTAAILSAAMMLEHAFGLV------------ 303
Query: 315 WECARHSEDQGSRCSVGGRDPSINSGGQGKVASKSTIMHH 354
E AR ED ++ + P + G G A +T++ H
Sbjct: 304 -ELARKVEDAVAKALLETPPPDLG-GSAGTEAFTATVLRH 341
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
Thermus Thermophilus
Length = 345
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 114/306 (37%), Gaps = 52/306 (16%)
Query: 64 KKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKS------RKQIDFL----- 112
K++ L RK+ E +RK + A + K ER S + +D L
Sbjct: 75 PKWDGLPRKISPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVREL 134
Query: 113 -NSKFVNE---LAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEERNMLQLAEI 168
+ E +++AE+ + E E+ AR E ++ R ++ N+L++ E
Sbjct: 135 TGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLEVGEF 194
Query: 169 WREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAELIIRAVKLL 228
WR+ ++ +ALEH+Y V+ L+ + A DV ++
Sbjct: 195 WRKTVEEVGRGYPDVALEHQY------VDAAAMHLVRSPARFDV--------VVTGNIFG 240
Query: 229 NIQDSDEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHHIVSPEVND 288
+I + V P S + L +G EP+ +P D + I +P
Sbjct: 241 DIL--SDLASVLPGSLGLLPS-ASLGRGTPV----FEPVHGSAP--DIAGKGIANPTAAI 291
Query: 289 FDNNHVLKHLNGFIDCNNGLKKDSRSWECARHSEDQGSRCSVGGRDPSINSGGQGKVASK 348
+L+H G + E AR ED ++ + P + G G A
Sbjct: 292 LSAAMMLEHAFGLV-------------ELARKVEDAVAKALLETPPPDLG-GSAGTEAFT 337
Query: 349 STIMHH 354
+T++ H
Sbjct: 338 ATVLRH 343
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 89 EAIVDELKDELSKERKSRKQID-FLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEES 147
E+I+D++ L K K+ I FL S+F +++ +A+ + + Y E++R RQL+EES
Sbjct: 94 ESILDQIA--LVKAMKAVGTIKRFLPSEFGHDVNRADP-VEPGLNMYREKRRVRQLVEES 150
>pdb|1I94|B Chain B, Crystal Structures Of The Small Ribosomal Subunit With
Tetracycline, Edeine And If3
pdb|1I95|B Chain B, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Edeine
pdb|1I96|B Chain B, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
pdb|1I97|B Chain B, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Tetracycline
pdb|2ZM6|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit
Length = 255
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 171 EERVQMKLVDAKLALE--HKYSQINKLVEELENFLMSNAATLDVMALRKA-ELIIRAVKL 227
EER + + V K LE KY +L++ L + + T + +A+R+A +L I + L
Sbjct: 127 EERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIAL 186
Query: 228 LNI-QDSDEFEYVAPAS-DSIFSIFEELRQGVD----AREMEVEPLTNYSPIYDA 276
+ D D +Y+ P + D+I SI L + VD AR VEP +Y+ + +A
Sbjct: 187 ADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQEA 241
>pdb|1FJG|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin, And Paromomycin
pdb|1HR0|B Chain B, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
pdb|1HNW|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Tetracycline
pdb|1HNX|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Pactamycin
pdb|1HNZ|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Hygromycin B
pdb|1GIX|E Chain E, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1gix, Contains The 30s Ribosome Subunit,
Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
In The File 1giy
pdb|1IBK|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotic Paromomycin
pdb|1IBL|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site And With The Antibiotic Paromomycin
pdb|1IBM|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site
pdb|1JGO|E Chain E, The Path Of Messenger Rna Through The Ribosome. This File,
1jgo, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGP|E Chain E, The Path Of Messenger Rna Through The Ribosome. This File,
1jgp, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGQ|E Chain E, The Path Of Messenger Rna Through The Ribosome. This File,
1jgq, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1J5E|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit
pdb|1N32|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Bound To Codon And Near-Cognate Transfer Rna
Anticodon Stem-Loop Mismatched At The First Codon
Position At The A Site With Paromomycin
pdb|1N33|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Bound To Codon And Near-Cognate Transfer Rna
Anticodon Stem-Loop Mismatched At The Second Codon
Position At The A Site With Paromomycin
pdb|1N34|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In The Presence Of Codon And
Crystallographically Disordered Near-Cognate Transfer
Rna Anticodon Stem-Loop Mismatched At The First Codon
Position
pdb|1N36|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In The Presence Of Crystallographically
Disordered Codon And Near-cognate Transfer Rna Anticodon
Stem-loop Mismatched At The Second Codon Position
pdb|1ML5|E Chain E, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
pdb|1XMO|B Chain B, Crystal Structure Of Mnm5u34t6a37-Trnalysuuu Complexed
With Aag-Mrna In The Decoding Center
pdb|1XMQ|B Chain B, Crystal Structure Of T6a37-Asllysuuu Aaa-Mrna Bound To The
Decoding Center
pdb|1XNQ|B Chain B, Structure Of An Inosine-Adenine Wobble Base Pair Complex
In The Context Of The Decoding Center
pdb|1XNR|B Chain B, Crystal Structure Of An Inosine-Cytosine Wobble Base Pair
In The Context Of The Decoding Center
pdb|1YL4|E Chain E, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. 30s Subunit. The Coordinates For The 50s Subunit
Are In The Pdb Entry 1yl3
pdb|2B64|B Chain B, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1
From A Crystal Structure Of The Whole Ribosomal Complex.
This File Contains The 30s Subunit, Trnas, Mrna And
Release Factor Rf1 From A Crystal Structure Of The Whole
Ribosomal Complex". The Entire Crystal Structure
Contains One 70s Ribosome, Trnas, Mrna And Release
Factor Rf1 And Is Described In Remark 400.
pdb|2B9M|B Chain B, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2
From A Crystal Structure Of The Whole Ribosomal Complex.
This File Contains The 30s Ribosomal Subunit, Trnas,
Mrna And Release Factor Rf2 From A Crystal Structure Of
The Whole Ribosomal Complex". The Entire Crystal
Structure Contains One 70s Ribosome, Trnas, Mrna And
Release Factor Rf2 And Is Described In Remark 400.
pdb|2B9O|B Chain B, 30s Ribosomal Subunit, Trnas And Mrna From A Crystal
Structure Of The Whole Ribosomal Complex With A Stop
Codon In The A-Site. This File Contains The 30s Subunit,
Trnas And Mrna From A Crystal Structure Of The Whole
Ribosomal Complex With A Stop Codon In The A-Site And Is
Described In Remark 400.
pdb|2F4V|B Chain B, 30s Ribosome + Designer Antibiotic
pdb|2HHH|B Chain B, Crystal Structure Of Kasugamycin Bound To The 30s
Ribosomal Subunit
pdb|2J00|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 1 Of 4).
This File Contains The 30s Subunit, Mrna, A-, P- And
E-Site Trnas And Paromomycin For Molecule I.
pdb|2J02|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 3 Of 4)
This File Contains The 30s Subunit, Mrna, A-, P- And
E-Site Trnas And Paromomycin For Molecule Ii.
pdb|2HGI|E Chain E, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgi Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgj.
pdb|2HGP|E Chain E, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgp Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgq.
pdb|2HGR|E Chain E, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgr Contains 30s
Ribosomal Subunit. The 50s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgu.
pdb|2OW8|CC Chain c, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
2ow8, Contains The 30s Ribosome Subunit, Two Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File
1vsa.
pdb|2UU9|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-asl With Cmo5u In
Position 34 Bound To An Mrna With A Gug-codon In The
A-site And Paromomycin.
pdb|2UUA|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-Asl With Cmo5u In
Position 34 Bound To An Mrna With A Guc-Codon In The
A-Site And Paromomycin.
pdb|2UUB|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-Asl With Cmo5u In
Position 34 Bound To An Mrna With A Guu-Codon In The
A-Site And Paromomycin.
pdb|2UUC|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-asl With Cmo5u In
Position 34 Bound To An Mrna With A Gua-codon In The
A-site And Paromomycin.
pdb|2UXC|B Chain B, Crystal Structure Of An Extended Trna Anticodon Stem Loop
In Complex With Its Cognate Mrna Ucgu In The Context Of
The Thermus Thermophilus 30s Subunit.
pdb|2UXB|B Chain B, Crystal Structure Of An Extended Trna Anticodon Stem Loop
In Complex With Its Cognate Mrna Gggu In The Context Of
The Thermus Thermophilus 30s Subunit.
pdb|2V46|B Chain B, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 1 Of 4). This File Contains The 30s
Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
Molecule 1.
pdb|2V48|B Chain B, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 3 Of 4). This File Contains The 30s
Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
Molecule 2.
pdb|2UXD|B Chain B, Crystal Structure Of An Extended Trna Anticodon Stem Loop
In Complex With Its Cognate Mrna Cggg In The Context Of
The Thermus Thermophilus 30s Subunit.
pdb|2QNH|CC Chain c, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 2qnh, Contains The 30s
Ribosome Subunit, Two Trna, And Mrna Molecules. 50s
Ribosome Subunit Is In The File 1vsp.
pdb|2OM7|N Chain N, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2VQE|B Chain B, Modified Uridines With C5-methylene Substituents At The
First Position Of The Trna Anticodon Stabilize U-g
Wobble Pairing During Decoding
pdb|2VQF|B Chain B, Modified Uridines With C5-Methylene Substituents At The
First Position Of The Trna Anticodon Stabilize U-G
Wobble Pairing During Decoding
pdb|3D5A|B Chain B, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 30s Subunit, Release
Factor 1 (Rf1), Two Trna, And Mrna Molecules Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
pdb|3D5C|B Chain B, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 30s Subunit, Release
Factor 1 (Rf1), Two Trna, And Mrna Molecules Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|3F1E|B Chain B, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One
70s Ribosome. The Entire Crystal Structure Contains Two
70s Ribosomes As Described In Remark 400.
pdb|3F1G|B Chain B, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
30s Subunit, Rf2, Two Trna, And Mrna Molecules Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|2WDG|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 30s Subunit A-,P-, And E-Site Trnas And
Paromomycin For Molecule I.
pdb|2WDH|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 30s Subunit A-,P-, And E-Site Trnas And
Paromomycin For Molecule Ii.
pdb|2WDK|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 30s
Subunit A-,P-, And E-Site Trnas And Paromomycin For
Molecule I.
pdb|2WDM|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 30s
Subunit A-,P-, And E-Site Trnas And Paromomycin For
Molecule Ii.
pdb|2WH1|B Chain B, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|2WH3|B Chain B, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome). This File Contains The
30s Subunit.
pdb|3HUW|B Chain B, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 30s Subunit, Mrna, P-Site Trna And Ef-P For
Molecule I.
pdb|3HUY|B Chain B, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 30s Subunit, Mrna, P-Site Trna And Ef-P For
Molecule Ii.
pdb|2WRI|B Chain B, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|B Chain B, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2WRN|B Chain B, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|B Chain B, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4).
pdb|3KIQ|BB Chain b, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 1 Of 4)
pdb|3KIS|BB Chain b, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 3 Of 4)
pdb|3KIU|BB Chain b, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 1 Of 4)
pdb|3KIX|BB Chain b, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 3 Of 4)
pdb|3KNH|B Chain B, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 30s Subunit For Molecule I
pdb|3KNJ|B Chain B, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 30s Subunit For Molecule Ii'
pdb|3KNL|B Chain B, The Structures Of Capreomycin Bound To The 70s Ribosome.
This File Contains The 30s Subunit For Molecule I
pdb|3KNN|B Chain B, The Structures Of Capreomycin Bound To The 70s Ribosome.
This File Contains The 30s Subunit For Molecule Ii
pdb|3I8G|E Chain E, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8g Contains 30s Ribosomal Subnit.The 50s
Ribosomal Can Be Found In Pdb Entry 3i8f. Molecule B In
The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
(50s).
pdb|3I8H|E Chain E, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8h Contains 30s Ribosomal Subnit. The 50s
Ribosomal Can Be Found In Pdb Entry 3i8i. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
pdb|3I9B|E Chain E, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9b Contains 30s Ribosomal Subunit Of Molecule B.
The 50s Subunit Can Be Found In Pdb Entry 3i9c. Molecule
A In The S Asymmetric Unit Is Deposited As 3i9d (30s)
And 3i9e (50s)
pdb|3I9D|E Chain E, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9d Contains 30s Ribosomal Subunit Of Molecule A.
The 50s Subunit Can Be Found In Pdb Entry 3i9e. Molecule
B In The S Asymmetric Unit Is Deposited As 3i9b (30s)
And 3i9c (50s)
pdb|2X9R|B Chain B, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9T|B Chain B, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2XFZ|B Chain B, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 1 Of 4)
pdb|2XG1|B Chain B, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 3 Of 4)
pdb|3OTO|B Chain B, Crystal Structure Of The 30s Ribosomal Subunit From A Ksga
Mutant Of Thermus Thermophilus (Hb8)
pdb|3OGE|B Chain B, Structure Of The Thermus Thermophilus Ribosome Complexed
With Chloramphenicol. This File Contains The 30s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3OGY|B Chain B, Structure Of The Thermus Thermophilus Ribosome Complexed
With Chloramphenicol. This File Contains The 30s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3OHC|B Chain B, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 30s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHD|B Chain B, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 30s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHY|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI0|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI2|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI4|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2XQD|B Chain B, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
pdb|2XSY|B Chain B, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|B Chain B, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0U|B Chain B, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|B Chain B, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Y|B Chain B, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|B Chain B, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|B Chain B, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|B Chain B, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|B Chain B, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|B Chain B, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|3ZVO|B Chain B, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3T1H|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Human Anti-Codon Stem Loop
(Hasl) Of Transfer Rna Lysine 3 (Trnalys3) Bound To An
Mrna With An Aaa-Codon In The A-Site And Paromomycin
pdb|3T1Y|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Human Anti-Codon Stem Loop
(Hasl) Of Transfer Rna Lysine 3 (Trnalys3) Bound To An
Mrna With An Aag-Codon In The A-Site And Paromomycin
pdb|3UXS|B Chain B, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UXT|B Chain B, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.'
pdb|3TVF|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3TVG|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3UYD|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UYF|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UZ3|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
pdb|3UZ4|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
pdb|3UZ6|E Chain E, Structure Analysis Of Ribosomal Decoding. This Entry
Contains The 30s Ribosomal Subunit Of The First 70s
Molecule In The Asymmetric Unit For The Cognate Trna-Tyr
Complex
pdb|3UZ7|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZG|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
pdb|3UZI|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
pdb|3UZL|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
pdb|3UZM|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-cognate
Trna-tyr Complex With Paromomycin
pdb|4ABR|B Chain B, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
pdb|4DH9|B Chain B, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|4DHB|B Chain B, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|3V22|B Chain B, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Rmf Of The 1st Ribosome In The Asu
pdb|3V24|B Chain B, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Rmf Of The 2nd Ribosome In The Asu
pdb|3V26|B Chain B, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Hpf Of The 1st Ribosome In The Asu
pdb|3V28|B Chain B, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Hpf Of The 2nd Ribosome In The Asu
pdb|3V2C|B Chain B, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Yfia Of The 1st Ribosome In The Asu
pdb|3V2E|B Chain B, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Yfia Of The 2nd Ribosome In The Asu
pdb|4AQY|B Chain B, Structure Of Ribosome-Apramycin Complexes
pdb|4DR1|B Chain B, Crystal Structure Of The Apo 30s Ribosomal Subunit From
Thermus Thermophilus (hb8)
pdb|4DR2|B Chain B, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Multiple Copies Of Paromomycin
Molecules Bound
pdb|4DR3|B Chain B, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Streptomycin Bound
pdb|4DR4|B Chain B, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Cognate Transfer Rna
Anticodon Stem-loop And Multiple Copies Of Paromomycin
Molecules Bound
pdb|4DR5|B Chain B, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Crystallographically
Disordered Cognate Transfer Rna Anticodon Stem-loop And
Streptomycin Bound
pdb|4DR6|B Chain B, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Near-cognate Transfer Rna
Anticodon Stem-loop Mismatched At The First Codon
Position And Streptomycin Bound
pdb|4DR7|B Chain B, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Crystallographically
Disordered Near-cognate Transfer Rna Anticodon Stem-loop
Mismatched At The Second Codon Position, And
Streptomycin Bound
pdb|4G5K|E Chain E, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 30s Subunit Of Molecule A.
pdb|4G5M|E Chain E, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 30s Subunit Of Molecule B.
pdb|4G5T|E Chain E, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 30s Subunit Of Molecule A.
pdb|4G5V|E Chain E, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 30s Subunit Of Molecule B.
pdb|4DUY|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U13c
pdb|4DUZ|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U13c, Bound
With Streptomycin
pdb|4DV0|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U20g
pdb|4DV1|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U20g, Bound
With Streptomycin
pdb|4DV2|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, C912a
pdb|4DV3|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, C912a, Bound
With Streptomycin
pdb|4DV4|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A914g
pdb|4DV5|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A914g, Bound
With Streptomycin
pdb|4DV6|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A915g
pdb|4DV7|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A915g, Bound
With Streptomycin
Length = 256
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 171 EERVQMKLVDAKLALE--HKYSQINKLVEELENFLMSNAATLDVMALRKA-ELIIRAVKL 227
EER + + V K LE KY +L++ L + + T + +A+R+A +L I + L
Sbjct: 128 EERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIAL 187
Query: 228 LNI-QDSDEFEYVAPAS-DSIFSIFEELRQGVD----AREMEVEPLTNYSPIYDA 276
+ D D +Y+ P + D+I SI L + VD AR VEP +Y+ + +A
Sbjct: 188 ADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQEA 242
>pdb|1PNS|B Chain B, Crystal Structure Of A Streptomycin Dependent Ribosome
From E. Coli, 30s Subunit Of 70s Ribosome. This File,
1pns, Contains The 30s Subunit, Two Trnas, And One Mrna
Molecule. The 50s Ribosomal Subunit Is In File 1pnu.
pdb|1PNX|B Chain B, Crystal Structure Of The Wild Type Ribosome From E. Coli,
30s Subunit Of 70s Ribosome. This File, 1pnx, Contains
Only Molecules Of The 30s Ribosomal Subunit. The 50s
Subunit Is In The Pdb File 1pny.
pdb|1VOQ|B Chain B, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOS|B Chain B, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOV|B Chain B, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOX|B Chain B, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOZ|B Chain B, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|3MR8|B Chain B, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3mr8 Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 3ms1.
Molecule B In The Same Asymmetric Unit Is Deposited As
3mrz (50s) And 3ms0 (30s).
pdb|3MS0|B Chain B, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3ms0 Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 3mrz.
Molecule A In The Same Asymmetric Unit Is Deposited As
3mr8 (30s) And 3ms1 (50s).
pdb|3PYN|B Chain B, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 30s Subunit Of The First 70s Ribosome.
pdb|3PYQ|B Chain B, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 30s Subunit Of The Second 70s
Ribosome.
pdb|3PYS|B Chain B, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 30s Subunit Of The First 70s Ribosome.
pdb|3PYU|B Chain B, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 30s Subunit Of The Second 70s Ribosome
Length = 234
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 171 EERVQMKLVDAKLALE--HKYSQINKLVEELENFLMSNAATLDVMALRKA-ELIIRAVKL 227
EER + + V K LE KY +L++ L + + T + +A+R+A +L I + L
Sbjct: 122 EERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIAL 181
Query: 228 LNI-QDSDEFEYVAPAS-DSIFSIFEELRQGVD----AREMEVEPLTNYS 271
+ D D +Y+ P + D+I SI L + VD AR VEP +Y+
Sbjct: 182 ADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYA 231
>pdb|3FIC|B Chain B, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
Length = 235
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 171 EERVQMKLVDAKLALE--HKYSQINKLVEELENFLMSNAATLDVMALRKA-ELIIRAVKL 227
EER + + V K LE KY +L++ L + + T + +A+R+A +L I + L
Sbjct: 122 EERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIAL 181
Query: 228 LNI-QDSDEFEYVAPAS-DSIFSIFEELRQGVD----AREMEVEPLTNYS 271
+ D D +Y+ P + D+I SI L + VD AR VEP +Y+
Sbjct: 182 ADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYA 231
>pdb|2CQ8|A Chain A, Solution Structure Of Rsgi Ruh-033, A Pp-Binding Domain Of
10-Fthfdh From Human Cdna
Length = 110
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 207 AATLDVMALRKAELI----IRAV------KLLNIQDSDEFEYVAPASDSIFSIFEELRQG 256
A V+ L +AEL+ +R+V K+L ++DS +F AS + + EE+++
Sbjct: 11 GAASSVLELTEAELVTAEAVRSVWQRILPKVLEVEDSTDFFKSGAASVDVVRLVEEVKEL 70
Query: 257 VDAREMEVE 265
D E+E E
Sbjct: 71 CDGLELENE 79
>pdb|3N2T|A Chain A, Structure Of The Glycerol Dehydrogenase Akr11b4 From
Gluconobacter Oxydans
Length = 348
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 122 KAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEERNMLQLAEIWREERVQMKLVDA 181
KA + K + + E+++ ++ +S+ RIR+EVE+ L++ I E Q+ D
Sbjct: 94 KAHVATKLGLHWVGEDEKNMKVFRDSRPARIRKEVEDSLRRLRVETIDLE---QIHWPDD 150
Query: 182 KLALEHKYSQINKL 195
K ++ ++ KL
Sbjct: 151 KTPIDESARELQKL 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,017,333
Number of Sequences: 62578
Number of extensions: 580304
Number of successful extensions: 1359
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1333
Number of HSP's gapped (non-prelim): 70
length of query: 473
length of database: 14,973,337
effective HSP length: 102
effective length of query: 371
effective length of database: 8,590,381
effective search space: 3187031351
effective search space used: 3187031351
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)