Query 045851
Match_columns 473
No_of_seqs 96 out of 117
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 06:09:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045851.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045851hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07888 CALCOCO1: Calcium bin 97.1 0.62 1.3E-05 51.5 28.9 100 108-207 301-441 (546)
2 PF09726 Macoilin: Transmembra 96.4 0.31 6.7E-06 55.1 20.1 66 34-111 458-523 (697)
3 KOG0977 Nuclear envelope prote 96.2 1.8 3.8E-05 48.1 23.9 96 38-133 115-226 (546)
4 KOG0977 Nuclear envelope prote 95.9 1.2 2.7E-05 49.2 21.1 162 41-206 97-276 (546)
5 KOG0161 Myosin class II heavy 94.2 7.5 0.00016 48.9 22.8 92 37-128 965-1058(1930)
6 PF00038 Filament: Intermediat 93.6 7.8 0.00017 38.5 18.2 99 37-135 48-148 (312)
7 PF09726 Macoilin: Transmembra 93.2 7.1 0.00015 44.5 19.0 70 37-111 426-509 (697)
8 PF06705 SF-assemblin: SF-asse 92.9 10 0.00022 37.2 22.6 75 84-160 93-170 (247)
9 PF00038 Filament: Intermediat 92.2 13 0.00029 36.8 20.0 75 37-116 76-151 (312)
10 KOG0161 Myosin class II heavy 91.7 30 0.00066 43.9 23.0 83 48-130 1060-1144(1930)
11 KOG0612 Rho-associated, coiled 91.5 15 0.00033 44.4 19.3 100 43-147 468-572 (1317)
12 KOG0971 Microtubule-associated 91.4 32 0.00069 41.0 21.2 109 29-137 269-408 (1243)
13 PF05701 WEMBL: Weak chloropla 90.4 31 0.00068 37.8 20.8 21 84-104 303-323 (522)
14 PF07798 DUF1640: Protein of u 89.9 8.5 0.00018 36.2 13.0 84 36-130 58-150 (177)
15 KOG0964 Structural maintenance 88.5 42 0.00091 40.2 19.4 174 21-200 235-442 (1200)
16 KOG0976 Rho/Rac1-interacting s 88.4 50 0.0011 39.1 19.6 85 47-132 249-344 (1265)
17 PF07888 CALCOCO1: Calcium bin 88.2 21 0.00046 39.9 16.3 53 29-81 297-349 (546)
18 PF05701 WEMBL: Weak chloropla 87.6 48 0.001 36.4 20.4 13 89-101 280-292 (522)
19 KOG0163 Myosin class VI heavy 87.2 22 0.00049 41.6 16.0 93 12-106 846-940 (1259)
20 KOG0996 Structural maintenance 87.2 82 0.0018 38.5 22.3 161 45-205 329-515 (1293)
21 PF13851 GAS: Growth-arrest sp 85.4 38 0.00081 32.9 21.3 52 14-70 10-61 (201)
22 COG1196 Smc Chromosome segrega 84.1 1E+02 0.0023 37.0 22.8 46 38-83 241-286 (1163)
23 PF09731 Mitofilin: Mitochondr 84.1 70 0.0015 35.0 22.9 138 16-160 226-373 (582)
24 PF12128 DUF3584: Protein of u 84.1 1E+02 0.0022 37.3 20.2 38 36-73 313-351 (1201)
25 PF05667 DUF812: Protein of un 83.5 70 0.0015 36.2 17.6 26 218-254 490-515 (594)
26 PF14915 CCDC144C: CCDC144C pr 82.7 67 0.0015 33.7 19.6 155 38-199 8-188 (305)
27 PF11559 ADIP: Afadin- and alp 81.3 42 0.00091 30.4 12.8 36 108-143 105-140 (151)
28 PF10473 CENP-F_leu_zip: Leuci 80.3 51 0.0011 30.8 14.5 96 38-147 26-124 (140)
29 KOG4593 Mitotic checkpoint pro 80.1 58 0.0013 37.6 15.4 180 20-204 363-573 (716)
30 KOG3915 Transcription regulato 79.1 11 0.00023 41.7 9.1 58 39-115 510-567 (641)
31 PF14197 Cep57_CLD_2: Centroso 77.8 25 0.00054 29.1 9.0 61 36-101 5-65 (69)
32 PF06705 SF-assemblin: SF-asse 77.8 75 0.0016 31.3 16.1 49 59-107 123-174 (247)
33 KOG0612 Rho-associated, coiled 77.4 1.9E+02 0.0041 35.7 19.9 73 49-121 507-581 (1317)
34 PRK09039 hypothetical protein; 77.2 99 0.0021 32.4 17.7 138 38-205 48-187 (343)
35 PLN03188 kinesin-12 family pro 77.2 1.8E+02 0.0038 36.1 18.8 69 30-98 1059-1143(1320)
36 PF10174 Cast: RIM-binding pro 76.9 1.6E+02 0.0034 34.6 18.3 39 167-205 276-316 (775)
37 TIGR02169 SMC_prok_A chromosom 76.8 1.5E+02 0.0033 34.3 23.6 15 42-56 293-307 (1164)
38 KOG4674 Uncharacterized conser 76.6 2.1E+02 0.0045 36.7 19.7 41 161-201 1368-1426(1822)
39 KOG0996 Structural maintenance 75.6 1.7E+02 0.0038 35.9 18.1 30 172-201 524-553 (1293)
40 KOG0994 Extracellular matrix g 75.6 2.2E+02 0.0047 35.5 20.1 19 33-51 1539-1557(1758)
41 PF12718 Tropomyosin_1: Tropom 75.4 69 0.0015 29.6 13.3 75 38-117 2-83 (143)
42 PF05837 CENP-H: Centromere pr 75.3 38 0.00082 29.7 10.0 65 83-147 3-80 (106)
43 PRK14154 heat shock protein Gr 75.1 63 0.0014 32.1 12.5 71 31-101 47-117 (208)
44 PRK00409 recombination and DNA 73.9 56 0.0012 37.8 13.5 27 109-135 568-594 (782)
45 PF12128 DUF3584: Protein of u 73.7 2.2E+02 0.0047 34.6 24.3 92 39-138 603-694 (1201)
46 TIGR01069 mutS2 MutS2 family p 73.5 49 0.0011 38.3 12.9 58 42-99 524-581 (771)
47 TIGR02231 conserved hypothetic 73.1 44 0.00094 36.2 11.9 85 37-123 72-164 (525)
48 PF10168 Nup88: Nuclear pore c 73.0 39 0.00084 38.9 11.9 15 102-116 634-648 (717)
49 PF15035 Rootletin: Ciliary ro 73.0 93 0.002 30.0 16.7 133 33-184 13-163 (182)
50 PRK10884 SH3 domain-containing 70.3 88 0.0019 30.8 12.2 25 109-133 137-161 (206)
51 PF07926 TPR_MLP1_2: TPR/MLP1/ 70.1 27 0.00059 31.4 8.1 48 30-84 53-100 (132)
52 TIGR00606 rad50 rad50. This fa 69.9 2.7E+02 0.0058 34.1 23.3 30 34-63 790-819 (1311)
53 KOG1029 Endocytic adaptor prot 69.6 1.6E+02 0.0035 35.1 15.5 58 42-111 326-383 (1118)
54 PF07926 TPR_MLP1_2: TPR/MLP1/ 69.5 86 0.0019 28.2 17.5 90 38-127 5-96 (132)
55 TIGR02168 SMC_prok_B chromosom 68.6 2.2E+02 0.0049 32.7 22.5 21 38-58 728-748 (1179)
56 KOG4787 Uncharacterized conser 68.2 1.8E+02 0.0039 33.7 15.2 65 38-109 334-398 (852)
57 PF09727 CortBP2: Cortactin-bi 67.7 1.2E+02 0.0025 30.0 12.4 45 95-139 146-190 (192)
58 COG2433 Uncharacterized conser 66.2 1.3E+02 0.0028 34.6 13.8 46 84-129 451-499 (652)
59 PF12325 TMF_TATA_bd: TATA ele 66.0 1.1E+02 0.0023 28.0 13.9 40 36-75 23-62 (120)
60 KOG4403 Cell surface glycoprot 65.6 42 0.00091 37.1 9.7 24 113-136 304-327 (575)
61 KOG0250 DNA repair protein RAD 65.5 1.7E+02 0.0037 35.6 15.1 90 36-129 344-433 (1074)
62 PRK00409 recombination and DNA 65.1 2.3E+02 0.0049 33.0 16.0 20 62-81 514-533 (782)
63 TIGR00606 rad50 rad50. This fa 64.5 3.4E+02 0.0073 33.2 21.7 83 37-119 830-921 (1311)
64 COG1196 Smc Chromosome segrega 63.9 3.3E+02 0.0072 32.9 23.3 33 173-205 853-885 (1163)
65 cd07673 F-BAR_FCHO2 The F-BAR 63.8 1.7E+02 0.0037 29.5 17.1 13 218-230 231-243 (269)
66 KOG4661 Hsp27-ERE-TATA-binding 63.2 92 0.002 35.7 11.9 64 71-145 612-676 (940)
67 PF04108 APG17: Autophagy prot 63.0 2.1E+02 0.0045 30.7 14.2 23 125-147 346-368 (412)
68 PF06005 DUF904: Protein of un 62.7 39 0.00085 28.2 7.0 57 32-96 14-70 (72)
69 KOG0933 Structural maintenance 62.4 3.7E+02 0.008 32.9 21.0 113 34-147 739-852 (1174)
70 PRK14140 heat shock protein Gr 62.0 1.6E+02 0.0036 28.8 12.8 67 33-99 34-100 (191)
71 KOG0995 Centromere-associated 61.7 2.9E+02 0.0063 31.6 21.8 90 39-133 269-361 (581)
72 KOG0163 Myosin class VI heavy 61.7 2.5E+02 0.0054 33.6 15.1 25 3-27 862-886 (1259)
73 COG2433 Uncharacterized conser 60.8 1.2E+02 0.0025 34.9 12.2 67 40-108 433-499 (652)
74 KOG2002 TPR-containing nuclear 59.3 3.4E+02 0.0074 32.9 16.0 74 13-96 713-786 (1018)
75 PHA02562 46 endonuclease subun 59.0 2.6E+02 0.0056 30.0 20.4 74 42-123 173-246 (562)
76 KOG3915 Transcription regulato 58.6 36 0.00077 37.9 7.7 31 38-78 526-556 (641)
77 PF11559 ADIP: Afadin- and alp 58.4 1.4E+02 0.0031 27.0 10.7 57 15-71 30-87 (151)
78 KOG0978 E3 ubiquitin ligase in 58.3 91 0.002 36.1 11.1 43 86-128 583-625 (698)
79 TIGR02168 SMC_prok_B chromosom 57.5 3.5E+02 0.0076 31.2 23.7 31 40-70 681-711 (1179)
80 PRK14139 heat shock protein Gr 57.4 77 0.0017 30.8 9.1 67 38-132 34-100 (185)
81 PRK14145 heat shock protein Gr 57.3 81 0.0018 31.0 9.3 69 36-132 45-113 (196)
82 PF05837 CENP-H: Centromere pr 57.0 1.2E+02 0.0027 26.5 9.6 71 38-108 5-76 (106)
83 KOG0976 Rho/Rac1-interacting s 57.0 1.5E+02 0.0032 35.5 12.4 96 39-134 413-513 (1265)
84 KOG1853 LIS1-interacting prote 56.3 2.6E+02 0.0057 29.3 16.6 50 27-76 36-85 (333)
85 cd07658 F-BAR_NOSTRIN The F-BA 56.0 2.1E+02 0.0046 28.2 13.3 9 37-45 81-89 (239)
86 PF10186 Atg14: UV radiation r 55.9 2E+02 0.0044 27.9 14.3 33 86-118 73-105 (302)
87 TIGR01069 mutS2 MutS2 family p 55.8 3.6E+02 0.0079 31.4 15.5 18 62-79 509-526 (771)
88 PRK14146 heat shock protein Gr 55.8 78 0.0017 31.4 9.0 69 36-132 54-122 (215)
89 PRK14158 heat shock protein Gr 55.8 1.1E+02 0.0023 30.1 9.8 73 32-132 36-108 (194)
90 PRK14143 heat shock protein Gr 55.2 2.4E+02 0.0052 28.5 12.6 45 37-81 68-112 (238)
91 PF15236 CCDC66: Coiled-coil d 55.0 2E+02 0.0044 27.6 14.8 68 68-147 61-128 (157)
92 PF05615 THOC7: Tho complex su 54.2 1.6E+02 0.0036 26.4 12.5 69 34-110 44-115 (139)
93 PRK14147 heat shock protein Gr 54.1 78 0.0017 30.3 8.4 69 36-132 18-86 (172)
94 PF03245 Phage_lysis: Bacterio 53.4 87 0.0019 28.3 8.2 56 82-137 6-61 (125)
95 PRK14156 heat shock protein Gr 53.0 73 0.0016 30.8 8.1 66 39-132 30-95 (177)
96 PF06428 Sec2p: GDP/GTP exchan 53.0 80 0.0017 28.0 7.7 63 44-124 2-64 (100)
97 KOG4807 F-actin binding protei 52.3 1.4E+02 0.003 33.0 10.7 83 27-132 376-463 (593)
98 KOG1103 Predicted coiled-coil 52.2 3.5E+02 0.0077 29.6 14.7 152 34-205 105-291 (561)
99 PF06428 Sec2p: GDP/GTP exchan 51.8 93 0.002 27.6 7.9 48 97-144 1-49 (100)
100 PF06785 UPF0242: Uncharacteri 50.7 1.6E+02 0.0035 31.8 10.7 104 40-167 110-225 (401)
101 PF01576 Myosin_tail_1: Myosin 50.0 5.4 0.00012 46.2 0.0 93 38-130 358-452 (859)
102 PF14915 CCDC144C: CCDC144C pr 49.6 3.4E+02 0.0075 28.7 13.2 34 37-70 180-213 (305)
103 KOG2129 Uncharacterized conser 49.0 2.5E+02 0.0055 31.2 12.1 10 197-206 324-333 (552)
104 KOG0963 Transcription factor/C 48.9 4.8E+02 0.01 30.2 16.1 114 33-164 232-357 (629)
105 PRK14151 heat shock protein Gr 48.9 2.6E+02 0.0055 27.0 12.2 67 34-100 18-84 (176)
106 PF10186 Atg14: UV radiation r 47.9 2.7E+02 0.0059 27.0 18.4 31 41-71 18-48 (302)
107 PF14739 DUF4472: Domain of un 47.9 1.5E+02 0.0033 26.8 8.8 93 13-141 7-100 (108)
108 PF04111 APG6: Autophagy prote 47.8 2.9E+02 0.0062 28.7 11.9 15 36-50 9-23 (314)
109 PF09304 Cortex-I_coil: Cortex 47.8 2.2E+02 0.0048 25.9 14.0 64 38-106 18-81 (107)
110 PRK09039 hypothetical protein; 47.7 2.9E+02 0.0063 29.0 12.1 45 36-80 81-132 (343)
111 KOG4466 Component of histone d 47.3 3.6E+02 0.0079 28.3 14.7 62 61-122 20-92 (291)
112 PRK03918 chromosome segregatio 47.1 4.9E+02 0.011 29.7 18.2 9 63-71 625-633 (880)
113 PF14523 Syntaxin_2: Syntaxin- 46.9 1.7E+02 0.0037 24.4 9.7 66 49-137 32-97 (102)
114 PF01025 GrpE: GrpE; InterPro 46.6 69 0.0015 29.1 6.6 62 38-99 13-74 (165)
115 KOG0288 WD40 repeat protein Ti 46.5 4.5E+02 0.0098 29.2 15.5 78 107-188 62-139 (459)
116 PF13935 Ead_Ea22: Ead/Ea22-li 45.8 2.4E+02 0.0052 25.8 10.0 25 34-58 65-89 (139)
117 PF04156 IncA: IncA protein; 45.6 2.5E+02 0.0055 26.0 15.7 36 41-76 79-114 (191)
118 PRK04778 septation ring format 45.4 4.7E+02 0.01 29.1 22.6 59 82-140 281-339 (569)
119 PF08614 ATG16: Autophagy prot 45.1 2.8E+02 0.0061 26.4 12.0 82 38-124 104-185 (194)
120 KOG1029 Endocytic adaptor prot 44.4 5E+02 0.011 31.3 14.0 83 34-116 484-572 (1118)
121 COG1579 Zn-ribbon protein, pos 44.1 3.6E+02 0.0079 27.4 14.1 29 38-66 33-61 (239)
122 PRK14162 heat shock protein Gr 43.9 3.3E+02 0.0071 26.8 12.5 63 37-99 40-102 (194)
123 COG3883 Uncharacterized protei 43.3 4E+02 0.0087 27.6 18.5 133 45-205 33-187 (265)
124 TIGR03752 conj_TIGR03752 integ 43.0 3.1E+02 0.0066 30.7 11.8 58 38-103 61-118 (472)
125 PF09763 Sec3_C: Exocyst compl 42.9 2.7E+02 0.0058 31.5 11.8 88 109-205 3-97 (701)
126 KOG0933 Structural maintenance 42.9 7.3E+02 0.016 30.6 23.5 101 38-138 686-796 (1174)
127 PRK11637 AmiB activator; Provi 42.8 4.4E+02 0.0095 28.0 21.0 35 39-73 43-77 (428)
128 PRK14148 heat shock protein Gr 42.2 1.9E+02 0.0041 28.5 9.2 67 38-132 42-108 (195)
129 TIGR03185 DNA_S_dndD DNA sulfu 42.1 5.5E+02 0.012 28.9 17.4 36 39-74 379-415 (650)
130 PF08647 BRE1: BRE1 E3 ubiquit 42.0 2.3E+02 0.0049 24.4 12.2 69 64-137 27-95 (96)
131 PRK14153 heat shock protein Gr 41.5 3.6E+02 0.0077 26.6 11.1 44 38-81 35-78 (194)
132 PF09727 CortBP2: Cortactin-bi 41.0 2E+02 0.0044 28.4 9.1 35 108-142 92-126 (192)
133 PRK02224 chromosome segregatio 40.6 6.2E+02 0.013 29.1 23.2 29 37-65 469-497 (880)
134 PRK14155 heat shock protein Gr 40.5 1.6E+02 0.0036 29.1 8.5 67 39-133 16-82 (208)
135 PF04778 LMP: LMP repeated reg 39.9 2.6E+02 0.0057 27.0 9.4 71 43-114 72-146 (157)
136 PF14712 Snapin_Pallidin: Snap 39.5 2.2E+02 0.0048 23.6 10.4 77 34-117 5-81 (92)
137 PRK02224 chromosome segregatio 39.0 6.5E+02 0.014 28.9 21.1 6 50-55 220-225 (880)
138 PRK04863 mukB cell division pr 38.6 9.3E+02 0.02 30.6 22.1 13 455-467 801-813 (1486)
139 PRK14161 heat shock protein Gr 38.1 2.3E+02 0.0049 27.4 8.9 23 110-132 65-87 (178)
140 PF08317 Spc7: Spc7 kinetochor 37.8 4.7E+02 0.01 26.9 15.5 14 87-100 213-226 (325)
141 PF09731 Mitofilin: Mitochondr 37.7 5.9E+02 0.013 28.0 15.3 23 104-126 334-356 (582)
142 PRK10884 SH3 domain-containing 37.2 4.2E+02 0.0091 26.1 11.3 27 32-58 89-115 (206)
143 PF12210 Hrs_helical: Hepatocy 36.9 3.1E+02 0.0068 24.6 9.9 82 18-110 11-95 (96)
144 PF04859 DUF641: Plant protein 36.3 41 0.00088 31.2 3.5 40 5-44 36-81 (131)
145 PF04977 DivIC: Septum formati 36.3 1.2E+02 0.0026 23.9 5.8 34 36-69 17-50 (80)
146 KOG4348 Adaptor protein CMS/SE 36.2 1.3E+02 0.0028 33.6 7.6 54 42-117 568-621 (627)
147 PF09636 XkdW: XkdW protein; 36.1 12 0.00026 33.8 0.0 38 91-128 66-103 (108)
148 PRK11637 AmiB activator; Provi 36.0 5.6E+02 0.012 27.2 21.3 36 38-73 49-84 (428)
149 KOG0239 Kinesin (KAR3 subfamil 36.0 4.2E+02 0.0092 30.6 12.0 104 34-137 180-288 (670)
150 PF05010 TACC: Transforming ac 35.9 4.5E+02 0.0098 26.1 19.3 30 115-147 80-109 (207)
151 PF15254 CCDC14: Coiled-coil d 35.6 8.5E+02 0.018 29.2 15.1 74 49-130 440-513 (861)
152 PF06160 EzrA: Septation ring 35.4 6.7E+02 0.015 28.0 14.9 56 83-138 278-333 (560)
153 PF03962 Mnd1: Mnd1 family; I 35.0 4.2E+02 0.0092 25.5 11.4 9 163-171 148-156 (188)
154 PRK14163 heat shock protein Gr 34.7 4.9E+02 0.011 26.1 11.9 62 38-99 42-103 (214)
155 KOG0239 Kinesin (KAR3 subfamil 34.7 7.8E+02 0.017 28.5 13.9 18 237-256 367-384 (670)
156 COG1340 Uncharacterized archae 33.5 6E+02 0.013 26.8 13.7 12 38-49 140-151 (294)
157 PRK14144 heat shock protein Gr 33.4 3E+02 0.0065 27.3 9.0 22 111-132 92-113 (199)
158 PF09730 BicD: Microtubule-ass 33.3 8.6E+02 0.019 28.6 20.7 90 109-206 74-186 (717)
159 TIGR03185 DNA_S_dndD DNA sulfu 33.0 7.5E+02 0.016 27.8 20.1 16 90-105 300-315 (650)
160 cd07625 BAR_Vps17p The Bin/Amp 32.5 3.5E+02 0.0075 27.2 9.5 13 134-146 214-226 (230)
161 PRK14160 heat shock protein Gr 32.4 5.2E+02 0.011 25.8 12.6 52 38-89 63-114 (211)
162 PRK14141 heat shock protein Gr 32.0 2.6E+02 0.0057 27.8 8.4 65 40-132 35-99 (209)
163 KOG0971 Microtubule-associated 31.7 1.1E+03 0.023 29.2 21.0 81 78-163 268-351 (1243)
164 COG0419 SbcC ATPase involved i 31.5 9.1E+02 0.02 28.3 21.7 11 160-170 661-671 (908)
165 KOG0980 Actin-binding protein 31.2 1E+03 0.022 28.9 20.7 32 38-69 367-398 (980)
166 KOG4674 Uncharacterized conser 31.1 1.3E+03 0.029 30.1 21.4 66 36-102 1314-1379(1822)
167 PF09036 Bcr-Abl_Oligo: Bcr-Ab 31.1 1.6E+02 0.0035 25.4 5.9 53 27-79 15-69 (79)
168 PRK00888 ftsB cell division pr 30.7 1.7E+02 0.0038 25.7 6.3 46 23-71 17-62 (105)
169 COG1842 PspA Phage shock prote 30.2 5.7E+02 0.012 25.6 18.7 75 38-137 33-107 (225)
170 PF11262 Tho2: Transcription f 30.0 1.5E+02 0.0033 30.3 6.7 51 39-89 49-100 (298)
171 PF09798 LCD1: DNA damage chec 28.8 1.4E+02 0.003 34.5 6.6 49 49-105 3-51 (654)
172 COG4717 Uncharacterized conser 28.2 1.2E+03 0.025 28.5 22.4 94 11-106 155-249 (984)
173 PF09789 DUF2353: Uncharacteri 28.2 5.6E+02 0.012 27.2 10.5 25 39-63 82-106 (319)
174 PF09730 BicD: Microtubule-ass 27.5 1.1E+03 0.023 27.9 13.6 48 38-85 354-401 (717)
175 PF13801 Metal_resist: Heavy-m 27.5 1.7E+02 0.0037 23.9 5.5 38 38-75 61-98 (125)
176 TIGR01000 bacteriocin_acc bact 27.3 7.8E+02 0.017 26.3 11.7 98 39-136 168-309 (457)
177 PF05700 BCAS2: Breast carcino 27.2 6E+02 0.013 24.9 10.6 71 52-123 138-208 (221)
178 PF07794 DUF1633: Protein of u 27.2 4.9E+02 0.011 29.8 10.2 54 12-71 585-639 (790)
179 PF10174 Cast: RIM-binding pro 26.9 1.1E+03 0.024 27.9 21.5 52 17-68 302-354 (775)
180 COG4942 Membrane-bound metallo 26.9 8.9E+02 0.019 26.8 19.8 36 38-73 47-82 (420)
181 KOG4466 Component of histone d 26.9 7.2E+02 0.016 26.2 10.8 136 152-293 69-233 (291)
182 TIGR01843 type_I_hlyD type I s 26.1 7.1E+02 0.015 25.3 18.2 21 38-58 83-103 (423)
183 KOG0993 Rab5 GTPase effector R 26.1 9.7E+02 0.021 26.9 13.4 105 36-147 345-463 (542)
184 KOG4364 Chromatin assembly fac 26.1 1.2E+03 0.025 27.8 14.5 69 72-141 269-337 (811)
185 PF05615 THOC7: Tho complex su 26.0 3E+02 0.0065 24.7 7.2 47 38-84 69-115 (139)
186 PF15035 Rootletin: Ciliary ro 25.8 6.2E+02 0.013 24.5 11.2 73 15-90 59-134 (182)
187 PRK14157 heat shock protein Gr 25.6 3.8E+02 0.0081 27.2 8.4 65 40-132 81-145 (227)
188 COG3074 Uncharacterized protei 25.3 3E+02 0.0064 23.7 6.4 56 34-93 16-74 (79)
189 KOG0804 Cytoplasmic Zn-finger 25.2 1E+03 0.022 26.8 13.9 54 43-103 347-402 (493)
190 PRK03918 chromosome segregatio 25.1 1.1E+03 0.023 27.1 24.7 6 20-25 149-154 (880)
191 TIGR02209 ftsL_broad cell divi 25.1 2.1E+02 0.0046 23.2 5.5 34 38-71 26-59 (85)
192 PF05529 Bap31: B-cell recepto 25.0 5.2E+02 0.011 24.4 8.9 55 47-101 115-172 (192)
193 TIGR01834 PHA_synth_III_E poly 24.8 68 0.0015 33.8 3.2 31 42-72 288-318 (320)
194 KOG0993 Rab5 GTPase effector R 24.7 1E+03 0.022 26.7 14.2 101 38-141 40-146 (542)
195 PF14073 Cep57_CLD: Centrosome 24.5 6.8E+02 0.015 24.6 15.9 42 37-82 2-43 (178)
196 PF15619 Lebercilin: Ciliary p 24.5 6.7E+02 0.014 24.5 13.2 85 37-125 69-164 (194)
197 COG3879 Uncharacterized protei 24.5 2.2E+02 0.0048 29.2 6.6 80 177-256 54-151 (247)
198 KOG2891 Surface glycoprotein [ 24.5 8.9E+02 0.019 25.9 13.8 41 137-177 392-438 (445)
199 KOG0982 Centrosomal protein Nu 24.4 1E+03 0.023 26.7 15.6 31 27-57 234-264 (502)
200 COG3524 KpsE Capsule polysacch 24.3 2E+02 0.0043 30.9 6.3 38 20-57 206-244 (372)
201 PRK04654 sec-independent trans 24.3 3.8E+02 0.0083 27.1 8.1 15 90-104 41-55 (214)
202 PF06156 DUF972: Protein of un 24.2 1.6E+02 0.0036 26.2 5.1 41 38-78 17-57 (107)
203 COG1322 Predicted nuclease of 24.1 1E+03 0.022 26.4 14.5 63 37-99 78-140 (448)
204 PF11172 DUF2959: Protein of u 23.6 1.5E+02 0.0033 29.5 5.1 47 27-73 154-200 (201)
205 PRK10132 hypothetical protein; 22.5 5.7E+02 0.012 22.9 8.4 52 49-100 11-62 (108)
206 PF13863 DUF4200: Domain of un 22.3 5.2E+02 0.011 22.4 16.4 51 97-147 67-117 (126)
207 KOG0999 Microtubule-associated 22.2 1.3E+03 0.028 27.0 15.1 114 40-164 40-170 (772)
208 PRK14159 heat shock protein Gr 22.2 5.1E+02 0.011 25.1 8.3 22 111-132 70-91 (176)
209 TIGR01005 eps_transp_fam exopo 21.7 1.2E+03 0.026 26.5 14.4 24 36-59 288-311 (754)
210 cd07686 F-BAR_Fer The F-BAR (F 21.7 4.7E+02 0.01 26.4 8.2 35 100-134 101-136 (234)
211 PF06657 Cep57_MT_bd: Centroso 21.4 2.8E+02 0.0061 23.4 5.7 38 36-73 17-66 (79)
212 TIGR01843 type_I_hlyD type I s 21.4 8.7E+02 0.019 24.7 15.6 10 175-184 252-261 (423)
213 PRK15422 septal ring assembly 21.2 5.5E+02 0.012 22.3 7.7 56 34-93 16-74 (79)
214 PF05266 DUF724: Protein of un 21.0 7.8E+02 0.017 24.0 15.4 82 47-133 90-174 (190)
215 cd07605 I-BAR_IMD Inverse (I)- 20.8 8.5E+02 0.018 24.3 16.8 57 14-76 62-120 (223)
216 KOG0288 WD40 repeat protein Ti 20.7 1.2E+03 0.026 26.1 14.0 30 118-147 100-129 (459)
217 PRK14149 heat shock protein Gr 20.5 5.8E+02 0.013 25.1 8.4 22 111-132 83-104 (191)
218 PF06295 DUF1043: Protein of u 20.4 2.6E+02 0.0057 25.3 5.7 39 38-76 27-65 (128)
219 PF04111 APG6: Autophagy prote 20.2 9.9E+02 0.021 24.8 12.9 20 182-201 165-184 (314)
220 PF06818 Fez1: Fez1; InterPro 20.0 2.2E+02 0.0048 28.4 5.5 40 49-89 137-176 (202)
No 1
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.14 E-value=0.62 Score=51.49 Aligned_cols=100 Identities=19% Similarity=0.221 Sum_probs=54.5
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHh------------------h-hhHhhhhH-HHhHHH
Q 045851 108 QIDFLNSKFVNELAKAESSAKQFMQYYEEEKRA-RQ----LLEES------------------K-TMRIREEV-EEERNM 162 (473)
Q Consensus 108 r~E~ln~KL~~ELaE~Kss~~~~lkelE~Erka-Re----llE~v------------------e-s~k~reE~-eeER~M 162 (473)
-++.-.-.|++||+++...-.+.+.||-.-|-. -. |-+.. . +...++++ +--+++
T Consensus 301 aSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el 380 (546)
T PF07888_consen 301 ASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSREL 380 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345556677888888777766666666554421 01 11110 0 01112222 234556
Q ss_pred HHhhhhhhhhhhh----------------hhHhhhhhhhhhhhHHHHHHHHHHHHHHhhhc
Q 045851 163 LQLAEIWREERVQ----------------MKLVDAKLALEHKYSQINKLVEELENFLMSNA 207 (473)
Q Consensus 163 LqmAEvWREERVQ----------------MKL~eAk~~leeK~s~ldkL~~elE~FL~sk~ 207 (473)
.++++...|||++ +.|+|++-.|.|+.+.+-.++-|=|-+..-+.
T Consensus 381 ~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQ 441 (546)
T PF07888_consen 381 QMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQ 441 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666543 45666666666766666666666666666553
No 2
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.42 E-value=0.31 Score=55.08 Aligned_cols=66 Identities=29% Similarity=0.363 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 045851 34 TFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDF 111 (473)
Q Consensus 34 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ 111 (473)
.=+-|..|+.|-++.+.+++.|.+-++..+..|..|=|+|++|+..+-. +-..|..|||.|+..|.
T Consensus 458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~------------lEkQL~eErk~r~~ee~ 523 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRAS------------LEKQLQEERKARKEEEE 523 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhHHHH
Confidence 3356788999999999999999999999999999999999999775443 33479999999998776
No 3
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.22 E-value=1.8 Score=48.07 Aligned_cols=96 Identities=19% Similarity=0.297 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH----------------HhHhhhhhhhHHHHHHHHHHHHHHHHH
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLR----------------EERNSWYVRKHYKMEAIVDELKDELSK 101 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~Kqla----------------EEK~~wKskE~eki~a~i~slk~ELe~ 101 (473)
|..|+.|+..++.+..+.+++....+.+++..+..++ ||....=.+|-.+|...|..++.+|++
T Consensus 115 i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4555555555555555555555555555553332221 233334445667777777777777777
Q ss_pred HHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 045851 102 ERKSRKQIDFLNSKFVNELAKAESSAKQFMQY 133 (473)
Q Consensus 102 ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lke 133 (473)
|.-+|...+.-..=|-.||.=.+...+..+.+
T Consensus 195 Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e 226 (546)
T KOG0977|consen 195 ETLLRVDLQNRVQTLLEELAFLKRIHKQEIEE 226 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 77777777766666766666666555554443
No 4
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.94 E-value=1.2 Score=49.20 Aligned_cols=162 Identities=17% Similarity=0.204 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHH---HHHHHHHHHHHHHHHHhhhhhhHHhHHHH
Q 045851 41 LQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKM---EAIVDELKDELSKERKSRKQIDFLNSKFV 117 (473)
Q Consensus 41 Lk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki---~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 117 (473)
++.-|+.+.....+|+.+....+.+++.|.+++.+ +.--..-.++++ ...+-.+.+|+.-=++..+.+|.-...|.
T Consensus 97 ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~-~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk 175 (546)
T KOG0977|consen 97 ARKLLDETARERAKLEIEITKLREELKELRKKLEK-AEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLK 175 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555532 211111122333 35677888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhhhH--hhhhHHHhHHHHHhhh--hhhhh---hhhhhHhhhh
Q 045851 118 NELAKAESSAKQFMQYYEEEK--------RARQLLEESKTMR--IREEVEEERNMLQLAE--IWREE---RVQMKLVDAK 182 (473)
Q Consensus 118 ~ELaE~Kss~~~~lkelE~Er--------kaRellE~ves~k--~reE~eeER~MLqmAE--vWREE---RVQMKL~eAk 182 (473)
+|.+-....+..+.+.++.|. +...|+|++..++ ...|+.++|.+.+-.= -=|++ ..|+-+.|-+
T Consensus 176 ~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiR 255 (546)
T KOG0977|consen 176 AENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIR 255 (546)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHH
Confidence 999999999999998888887 5566788885544 3467888888877654 22222 3455555555
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhh
Q 045851 183 LALEHKYSQINKLVEELENFLMSN 206 (473)
Q Consensus 183 ~~leeK~s~ldkL~~elE~FL~sk 206 (473)
.+++. ++..-+.|||...+.+
T Consensus 256 aqye~---~~~~nR~diE~~Y~~k 276 (546)
T KOG0977|consen 256 AQYEA---ISRQNRKDIESWYKRK 276 (546)
T ss_pred HHHHH---HHHHhHHHHHHHHHHH
Confidence 55543 5566778888888775
No 5
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.22 E-value=7.5 Score=48.91 Aligned_cols=92 Identities=22% Similarity=0.335 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH--HhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhH
Q 045851 37 FVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLR--EERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNS 114 (473)
Q Consensus 37 lv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~Kqla--EEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~ 114 (473)
=|+.|+.|+..-+.+|..|.++++.....+.+|.-.+. +|++.--+|-..|+.+.|+++...|+.|++.|..+|..-+
T Consensus 965 ~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~r 1044 (1930)
T KOG0161|consen 965 KLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKR 1044 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888888888888888888887777777777665 5667777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 045851 115 KFVNELAKAESSAK 128 (473)
Q Consensus 115 KL~~ELaE~Kss~~ 128 (473)
||.-||...+.+..
T Consensus 1045 kle~el~~~~e~~~ 1058 (1930)
T KOG0161|consen 1045 KLEGELKDLQESIE 1058 (1930)
T ss_pred HHHHHHHHhhhHHH
Confidence 99999976666554
No 6
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.62 E-value=7.8 Score=38.50 Aligned_cols=99 Identities=16% Similarity=0.235 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHh--HhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhH
Q 045851 37 FVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREE--RNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNS 114 (473)
Q Consensus 37 lv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEE--K~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~ 114 (473)
+-..+..||..+|..|..+..++....-+++.+...+.+= |.....+.+..+..-|..++.+|+.+...|-.++.--.
T Consensus 48 ~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~ 127 (312)
T PF00038_consen 48 IKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQ 127 (312)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHH
Confidence 3455666666666666666665555444444333333221 11111334455666667777777777777776666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045851 115 KFVNELAKAESSAKQFMQYYE 135 (473)
Q Consensus 115 KL~~ELaE~Kss~~~~lkelE 135 (473)
-|-.||.-.+....+=+.+|.
T Consensus 128 ~L~eEl~fl~~~heeEi~~L~ 148 (312)
T PF00038_consen 128 SLKEELEFLKQNHEEEIEELR 148 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhhhhhhhhhh
Confidence 666666655555444444433
No 7
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.16 E-value=7.1 Score=44.49 Aligned_cols=70 Identities=24% Similarity=0.334 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------hhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 045851 37 FVSALQAELVQARLRIHELEDE--------------HRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKE 102 (473)
Q Consensus 37 lv~aLk~EL~~Ar~rI~eL~~E--------------~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~E 102 (473)
-|+.|++||.++|..=.||-.. -+..+++.|.|-.++.+=. +.+.+=+..++.|-..|.+|
T Consensus 426 dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~-----~aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 426 DVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLV-----QARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 3788888988887766665444 2233445555555444332 22333456788888889999
Q ss_pred HHhhhhhhH
Q 045851 103 RKSRKQIDF 111 (473)
Q Consensus 103 Rk~Rkr~E~ 111 (473)
|+.|..+|.
T Consensus 501 ~~~R~~lEk 509 (697)
T PF09726_consen 501 RRQRASLEK 509 (697)
T ss_pred HHHHHHHHH
Confidence 999988875
No 8
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=92.90 E-value=10 Score=37.22 Aligned_cols=75 Identities=25% Similarity=0.470 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhh-hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHhhhhHHHhH
Q 045851 84 KHYKMEAIVDELKDELSKERKSRKQ-IDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEES--KTMRIREEVEEER 160 (473)
Q Consensus 84 E~eki~a~i~slk~ELe~ERk~Rkr-~E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaRellE~v--es~k~reE~eeER 160 (473)
--+.+..-|..|...+..|+.-|.. .|.++..|+++|.+...+|..-.. .++.+...|+..| ...++...++.|+
T Consensus 93 ~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~--~R~erE~~i~krl~e~~~~l~~~i~~Ek 170 (247)
T PF06705_consen 93 RLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERN--EREEREENILKRLEEEENRLQEKIEKEK 170 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555678888899999988876 899999999999998776654322 2333333444444 3344444444444
No 9
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.15 E-value=13 Score=36.84 Aligned_cols=75 Identities=24% Similarity=0.351 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh-hhHHhHH
Q 045851 37 FVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQ-IDFLNSK 115 (473)
Q Consensus 37 lv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr-~E~ln~K 115 (473)
-+..|+.+++..+.+..+..+.+.....++..|-+.+.++-++ +..+...|+.+++||+.=++.... ++.|-.+
T Consensus 76 e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~-----r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~ 150 (312)
T PF00038_consen 76 EIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLA-----RVDLENQIQSLKEELEFLKQNHEEEIEELREQ 150 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-----HhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 3566777777777777777777777777777777777776653 344666789999999887765443 4444444
Q ss_pred H
Q 045851 116 F 116 (473)
Q Consensus 116 L 116 (473)
+
T Consensus 151 ~ 151 (312)
T PF00038_consen 151 I 151 (312)
T ss_dssp -
T ss_pred c
Confidence 4
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.73 E-value=30 Score=43.91 Aligned_cols=83 Identities=22% Similarity=0.343 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhhhchhhHHHHHHHHHHhHhh--hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHH
Q 045851 48 ARLRIHELEDEHRSSKKKYENLVRKLREERNS--WYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAES 125 (473)
Q Consensus 48 Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~--wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Ks 125 (473)
....+.+|..+...-.-++-.+--++.++.+. -..|.-..+.+-|..+.++|+.||..|.++|...+.|+.||.+.+-
T Consensus 1060 ~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~ 1139 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKE 1139 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555666666677666543 3344555677889999999999999999999999999999998876
Q ss_pred HHHHH
Q 045851 126 SAKQF 130 (473)
Q Consensus 126 s~~~~ 130 (473)
-+...
T Consensus 1140 ~Lee~ 1144 (1930)
T KOG0161|consen 1140 ELEEQ 1144 (1930)
T ss_pred HHHHH
Confidence 55443
No 11
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=91.50 E-value=15 Score=44.41 Aligned_cols=100 Identities=20% Similarity=0.173 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHhhh-----chhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHH
Q 045851 43 AELVQARLRIHELEDEHRS-----SKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFV 117 (473)
Q Consensus 43 ~EL~~Ar~rI~eL~~E~~s-----~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 117 (473)
.||+.+..+++-.+.+.+. .++++.-.. +|++-...+..++.+-|+.+++||++..+-.+++-.-+.|+.
T Consensus 468 keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~-----ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~ 542 (1317)
T KOG0612|consen 468 KELEETIEKLKSEESELQREQKALLQHEQKEVE-----EKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVN 542 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3555555555444444333 223333333 333334445667788888888888888777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045851 118 NELAKAESSAKQFMQYYEEEKRARQLLEES 147 (473)
Q Consensus 118 ~ELaE~Kss~~~~lkelE~ErkaRellE~v 147 (473)
.+..++..+.--+.-+.+..+|.|...++.
T Consensus 543 ~~rk~le~~~~d~~~e~~~~~kl~~~~~e~ 572 (1317)
T KOG0612|consen 543 SLRKQLEEAELDMRAESEDAGKLRKHSKEL 572 (1317)
T ss_pred HHHHHHHHhhhhhhhhHHHHhhHhhhhhhh
Confidence 777777766666666777777777776666
No 12
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.41 E-value=32 Score=40.97 Aligned_cols=109 Identities=21% Similarity=0.293 Sum_probs=79.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHH---------HHHHHHHhHhhhhhhhHHHHHHHHHHHHHHH
Q 045851 29 EDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYEN---------LVRKLREERNSWYVRKHYKMEAIVDELKDEL 99 (473)
Q Consensus 29 Eq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~---------L~KqlaEEK~~wKskE~eki~a~i~slk~EL 99 (473)
|-.+--|.-+.-|+.||.+||...++++.-+..++.++.+ |=|.+||||+--=--|-+-.+.-|++|-.+|
T Consensus 269 EfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdl 348 (1243)
T KOG0971|consen 269 EFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDL 348 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455667889999999999999999888888777665 4588999999777777777777787777776
Q ss_pred HHHHH---------------hhhhhhHHhHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 045851 100 SKERK---------------SRKQIDFLNSKFVNELAK-------AESSAKQFMQYYEEE 137 (473)
Q Consensus 100 e~ERk---------------~Rkr~E~ln~KL~~ELaE-------~Kss~~~~lkelE~E 137 (473)
|-=|- --+++|.-|.||-.-|-. .|--..++.+++|+-
T Consensus 349 EILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k 408 (1243)
T KOG0971|consen 349 EILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKK 408 (1243)
T ss_pred HHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 64332 247899999999877644 344445555655543
No 13
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=90.37 E-value=31 Score=37.79 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 045851 84 KHYKMEAIVDELKDELSKERK 104 (473)
Q Consensus 84 E~eki~a~i~slk~ELe~ERk 104 (473)
|-..++..+.+|+.||+.++.
T Consensus 303 E~~~L~~~vesL~~ELe~~K~ 323 (522)
T PF05701_consen 303 EASSLRASVESLRSELEKEKE 323 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555543
No 14
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=89.93 E-value=8.5 Score=36.18 Aligned_cols=84 Identities=32% Similarity=0.450 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHH--------HHhh
Q 045851 36 SFVSALQAELVQAR-LRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKE--------RKSR 106 (473)
Q Consensus 36 Slv~aLk~EL~~Ar-~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~E--------Rk~R 106 (473)
+.++.|+.|+...+ .++..|..+....+++++.|-.+|.+|-. ++++ ++|-+++.| +...
T Consensus 58 a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~--------~l~a---~~klD~n~eK~~~r~e~~~~~ 126 (177)
T PF07798_consen 58 AAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEIN--------KLRA---EVKLDLNLEKGRIREEQAKQE 126 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH---HHHHHHHHhHHHHHHHHHHHH
Confidence 34556666665443 55566666666666666666666655522 2222 233333322 3445
Q ss_pred hhhhHHhHHHHHHHHHHHHHHHHH
Q 045851 107 KQIDFLNSKFVNELAKAESSAKQF 130 (473)
Q Consensus 107 kr~E~ln~KL~~ELaE~Kss~~~~ 130 (473)
.++..+|.|+..|++.+|+.+..+
T Consensus 127 ~ki~e~~~ki~~ei~~lr~~iE~~ 150 (177)
T PF07798_consen 127 LKIQELNNKIDTEIANLRTEIESL 150 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888777766554
No 15
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.54 E-value=42 Score=40.25 Aligned_cols=174 Identities=20% Similarity=0.278 Sum_probs=112.9
Q ss_pred hhhccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHH------HHH
Q 045851 21 LYNHVK-LLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEA------IVD 93 (473)
Q Consensus 21 vlnriw-leEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a------~i~ 93 (473)
+.+.+- |+++-.++.--=.-+..+|+.++..+..|..+.. +|++.++-+.+||..-+.++.+-++. -|.
T Consensus 235 ~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~----ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~k 310 (1200)
T KOG0964|consen 235 INGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIK----ELENKLTNLREEKEQLKARETKISKKKTKLELKIK 310 (1200)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 333333 4444433322224566788999999999876654 67777777777877777666555544 479
Q ss_pred HHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh----------------hh-hH-
Q 045851 94 ELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYE----EEKRARQLLEES----------------KT-MR- 151 (473)
Q Consensus 94 slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lkelE----~ErkaRellE~v----------------es-~k- 151 (473)
++.++++..+.-|......+.++..++.+-+--++.....|. .|...+.-|-.+ ++ ..
T Consensus 311 dlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~e 390 (1200)
T KOG0964|consen 311 DLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEE 390 (1200)
T ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHH
Confidence 999999999999999999999999888877777766555443 222222222222 11 11
Q ss_pred ----hhhhHH-HhHHHHHhhhhhhhhhhhhhHhhhhhhhhhhhHHHHHHHHHHH
Q 045851 152 ----IREEVE-EERNMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELE 200 (473)
Q Consensus 152 ----~reE~e-eER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE 200 (473)
+|.|++ -.+.+.--- =++.-.||-+.+++..+.+|...+..|...|.
T Consensus 391 RDkwir~ei~~l~~~i~~~k--e~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~ 442 (1200)
T KOG0964|consen 391 RDKWIRSEIEKLKRGINDTK--EQENILQKEIEDLESELKEKLEEIKELESSIN 442 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 344432 222222222 25678899999999999999988887776654
No 16
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=88.39 E-value=50 Score=39.05 Aligned_cols=85 Identities=22% Similarity=0.291 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh-----------hhhHHhHH
Q 045851 47 QARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRK-----------QIDFLNSK 115 (473)
Q Consensus 47 ~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rk-----------r~E~ln~K 115 (473)
.....|.|+--..+..-++|+--|+++.- |.+.=.+|.--..-.|..++.||+.+++.|- =++..|.|
T Consensus 249 k~~s~i~E~d~~lq~sak~ieE~m~qlk~-kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmk 327 (1265)
T KOG0976|consen 249 KTCSMIEEQDMDLQASAKEIEEKMRQLKA-KNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMK 327 (1265)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 44556666666666666666666666521 2222234545556678889999999998764 46789999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045851 116 FVNELAKAESSAKQFMQ 132 (473)
Q Consensus 116 L~~ELaE~Kss~~~~lk 132 (473)
|.++.++++.++..+..
T Consensus 328 ltrqkadirc~LlEarr 344 (1265)
T KOG0976|consen 328 LTRQKADIRCALLEARR 344 (1265)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999988887765543
No 17
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=88.15 E-value=21 Score=39.90 Aligned_cols=53 Identities=15% Similarity=0.033 Sum_probs=34.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 045851 29 EDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWY 81 (473)
Q Consensus 29 Eq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wK 81 (473)
++..++-.-+..|..||.-|.+.=...++|-...+-+.+.|-.++++..+.||
T Consensus 297 e~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lk 349 (546)
T PF07888_consen 297 EQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELK 349 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 33333444455666666666666566666667777777777777887777664
No 18
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=87.65 E-value=48 Score=36.39 Aligned_cols=13 Identities=23% Similarity=0.366 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 045851 89 EAIVDELKDELSK 101 (473)
Q Consensus 89 ~a~i~slk~ELe~ 101 (473)
...|.+++.||+.
T Consensus 280 ~~~l~s~~~ELe~ 292 (522)
T PF05701_consen 280 QSSLASAKKELEE 292 (522)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 19
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=87.22 E-value=22 Score=41.58 Aligned_cols=93 Identities=14% Similarity=0.172 Sum_probs=50.6
Q ss_pred CcchHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHH-
Q 045851 12 SKTAREAYCLYNHVKLLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEA- 90 (473)
Q Consensus 12 lkTs~ellkvlnriwleEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a- 90 (473)
++.+.+...|+++++ |...--+|-+..+-.+|+.+=..|+--.--++....+++.+++...+=-..--+|++..|..
T Consensus 846 ~kns~k~~ei~s~lk--e~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~~q~~~e~ 923 (1259)
T KOG0163|consen 846 LKNSLKTIEILSRLK--EGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKEQQQIEEL 923 (1259)
T ss_pred HHhhHHHHHHHHHHh--cchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 456667777777765 33444456677777788887777773222233334444444444422222222344444433
Q ss_pred -HHHHHHHHHHHHHHhh
Q 045851 91 -IVDELKDELSKERKSR 106 (473)
Q Consensus 91 -~i~slk~ELe~ERk~R 106 (473)
.++.+.+.+|.||+.|
T Consensus 924 er~rk~qE~~E~ER~rr 940 (1259)
T KOG0163|consen 924 ERLRKIQELAEAERKRR 940 (1259)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 2456667777777654
No 20
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.17 E-value=82 Score=38.52 Aligned_cols=161 Identities=20% Similarity=0.251 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh--hhhhhhH-HHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 045851 45 LVQARLRIHELEDEHRSSKKKYENLVRKLREERN--SWYVRKH-YKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELA 121 (473)
Q Consensus 45 L~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~--~wKskE~-eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELa 121 (473)
|.+.+++|-+...+....+..+...-.++.-+.. +.|...+ ..++.....++......++-++.+|.-+.++--.|.
T Consensus 329 ~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK 408 (1293)
T KOG0996|consen 329 LYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLK 408 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666767777777777777666666652222 2223333 347777888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh------hhh--------------HhhhhHHHhHHHH-Hhhhhhhhh--hhhhhH
Q 045851 122 KAESSAKQFMQYYEEEKRARQLLEES------KTM--------------RIREEVEEERNML-QLAEIWREE--RVQMKL 178 (473)
Q Consensus 122 E~Kss~~~~lkelE~ErkaRellE~v------es~--------------k~reE~eeER~ML-qmAEvWREE--RVQMKL 178 (473)
-+.+-++++.+++|+.++.+.=+|.. +.. +.++++++.+.-| +=++.-++| +.|-.|
T Consensus 409 ~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel 488 (1293)
T KOG0996|consen 409 RLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKEL 488 (1293)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999888777776 111 1122222222222 224444444 456666
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhh
Q 045851 179 VDAKLALEHKYSQINKLVEELENFLMS 205 (473)
Q Consensus 179 ~eAk~~leeK~s~ldkL~~elE~FL~s 205 (473)
+.....+-+.-+.++-...||+-.+..
T Consensus 489 ~~~~~~~n~~~~e~~vaesel~~L~~~ 515 (1293)
T KOG0996|consen 489 MPLLKQVNEARSELDVAESELDILLSR 515 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666655
No 21
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.36 E-value=38 Score=32.90 Aligned_cols=52 Identities=13% Similarity=0.259 Sum_probs=35.6
Q ss_pred chHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHH
Q 045851 14 TAREAYCLYNHVKLLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLV 70 (473)
Q Consensus 14 Ts~ellkvlnriwleEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~ 70 (473)
.+.++=..||.| -..|+.+|+.|+.|+..-+.+.....+.-.....+...|.
T Consensus 10 af~~iK~YYndI-----T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~ 61 (201)
T PF13851_consen 10 AFQEIKNYYNDI-----TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLS 61 (201)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566677777 6789999999999998888766665555444444444433
No 22
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=84.12 E-value=1e+02 Score=36.97 Aligned_cols=46 Identities=26% Similarity=0.345 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhh
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVR 83 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKsk 83 (473)
+..+..+|..++.++.++.........+|+.+-.++.+=+..|...
T Consensus 241 l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~ 286 (1163)
T COG1196 241 LEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEEL 286 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666666655556665555555544444433
No 23
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=84.10 E-value=70 Score=34.98 Aligned_cols=138 Identities=20% Similarity=0.333 Sum_probs=58.4
Q ss_pred HHHHHhhhccc--cccccc---chhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHh-HhhhhhhhHHHHH
Q 045851 16 REAYCLYNHVK--LLEDQV---TTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREE-RNSWYVRKHYKME 89 (473)
Q Consensus 16 ~ellkvlnriw--leEq~~---s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEE-K~~wKskE~eki~ 89 (473)
.++..++|.+. +.+... ..-++|...+..+++...+|.+|...-+ ..+...+++..++ -..-..+....+.
T Consensus 226 ~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~---~~l~~~L~~q~~e~~~~~~~~~~~~le 302 (582)
T PF09731_consen 226 QELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEEEE---EELERALEEQREELLSKLREELEQELE 302 (582)
T ss_pred HHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777775 333333 2234455555555555554444433222 2333333333332 1111122222222
Q ss_pred ----HHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhHHHhH
Q 045851 90 ----AIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEER 160 (473)
Q Consensus 90 ----a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaRellE~ves~k~reE~eeER 160 (473)
...+.++.+++.+| .+--+..+.+|..||.-.+..+...+++...+.+. -+..-+...+.+-++.||
T Consensus 303 ~~~~~~~~~~~~e~~~~~--~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~--e~~~~~~~~i~~~v~~Er 373 (582)
T PF09731_consen 303 EKRAELEEELREEFERER--EELEEKYEEELRQELKRQEEAHEEHLKNELREQAI--ELQREFEKEIKEKVEQER 373 (582)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 22334444443333 22334445666666666666555555543332222 111113344455555555
No 24
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=84.06 E-value=1e+02 Score=37.28 Aligned_cols=38 Identities=24% Similarity=0.463 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchh-hHHHHHHHH
Q 045851 36 SFVSALQAELVQARLRIHELEDEHRSSKK-KYENLVRKL 73 (473)
Q Consensus 36 Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~-eie~L~Kql 73 (473)
.-++++..+|......++.+...+..+.. .|+.+...+
T Consensus 313 ~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~ 351 (1201)
T PF12128_consen 313 KELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARV 351 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 34667777777777777777777777754 577766665
No 25
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=83.53 E-value=70 Score=36.18 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=15.2
Q ss_pred HHHHHHHhhccCcCCCCcccccCCCCCchhhhHHhhh
Q 045851 218 AELIIRAVKLLNIQDSDEFEYVAPASDSIFSIFEELR 254 (473)
Q Consensus 218 ae~~rqs~~Sv~~~~~kefsy~P~~~dD~~sifeel~ 254 (473)
.+.|-.-+..+.=|. +||+.|..|.+
T Consensus 490 t~RIlEIv~NI~KQk-----------~eI~KIl~DTr 515 (594)
T PF05667_consen 490 TRRILEIVKNIRKQK-----------EEIEKILSDTR 515 (594)
T ss_pred HHHHHHHHHhHHHHH-----------HHHHHHHHHHH
Confidence 344555555555454 57777777765
No 26
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=82.71 E-value=67 Score=33.73 Aligned_cols=155 Identities=18% Similarity=0.263 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHhhhchhhHHHHHHH--HHHh----HhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 045851 38 VSALQAELVQARLRIHE----LEDEHRSSKKKYENLVRK--LREE----RNSWYVRKHYKMEAIVDELKDELSKERKSRK 107 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~e----L~~E~~s~~~eie~L~Kq--laEE----K~~wKskE~eki~a~i~slk~ELe~ERk~Rk 107 (473)
|.-|+.||+.-+.+-.+ ...+....+.+.+.|-|- |.|| ...+-+.+-.-+.|----|..+|+.|+..+.
T Consensus 8 ia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~ke 87 (305)
T PF14915_consen 8 IAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKE 87 (305)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHH
Confidence 67788888877665544 344455556666666654 3444 3344555556666666667789999999998
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhHhhhhHHHh---------HHHHHhhhhhhh-
Q 045851 108 QIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEES------KTMRIREEVEEE---------RNMLQLAEIWRE- 171 (473)
Q Consensus 108 r~E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaRellE~v------es~k~reE~eeE---------R~MLqmAEvWRE- 171 (473)
|+| .|+.-..+.+..|++|++.=-.++.=+|-. +-..+.+-|..| -..-|++.+=..
T Consensus 88 rLE-------tEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~ 160 (305)
T PF14915_consen 88 RLE-------TEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKF 160 (305)
T ss_pred HHH-------HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHH
Confidence 765 355555555666677766655555544444 222333333222 222233332111
Q ss_pred hhhhhhHhhhhhhhhhhhHHHHHHHHHH
Q 045851 172 ERVQMKLVDAKLALEHKYSQINKLVEEL 199 (473)
Q Consensus 172 ERVQMKL~eAk~~leeK~s~ldkL~~el 199 (473)
-...++|-.++.+|-+|.-+++.++.+|
T Consensus 161 nsLe~elh~trdaLrEKtL~lE~~QrdL 188 (305)
T PF14915_consen 161 NSLEIELHHTRDALREKTLALESVQRDL 188 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1345556666666777766666665443
No 27
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=81.34 E-value=42 Score=30.43 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=24.2
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045851 108 QIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQL 143 (473)
Q Consensus 108 r~E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaRel 143 (473)
.++..++.+..|+..++..+.....-|+.|-|.+++
T Consensus 105 ~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~ 140 (151)
T PF11559_consen 105 SLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKER 140 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777777777777777777766553
No 28
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=80.29 E-value=51 Score=30.82 Aligned_cols=96 Identities=30% Similarity=0.306 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHH-
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKF- 116 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL- 116 (473)
|-+|..||+.++..--.++.+--..+.+|..|--++ +.+..-+..+..||..=|.-+..+...=.+.
T Consensus 26 v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el------------~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q 93 (140)
T PF10473_consen 26 VESLERELEMSQENKECLILDAENSKAEIETLEEEL------------EELTSELNQLELELDTLRSEKENLDKELQKKQ 93 (140)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666655444 2344444555555555444444444433344
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045851 117 --VNELAKAESSAKQFMQYYEEEKRARQLLEES 147 (473)
Q Consensus 117 --~~ELaE~Kss~~~~lkelE~ErkaRellE~v 147 (473)
+.||.-..+++.+.+++.|.+ -+.+.+..
T Consensus 94 ~kv~eLE~~~~~~~~~l~~~E~e--k~q~~e~~ 124 (140)
T PF10473_consen 94 EKVSELESLNSSLENLLQEKEQE--KVQLKEES 124 (140)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHH
Confidence 567777777788888877777 34444443
No 29
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.09 E-value=58 Score=37.58 Aligned_cols=180 Identities=17% Similarity=0.137 Sum_probs=98.0
Q ss_pred Hhhhccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHH-----h----HhhhhhhhHHHHH
Q 045851 20 CLYNHVK-LLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLRE-----E----RNSWYVRKHYKME 89 (473)
Q Consensus 20 kvlnriw-leEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaE-----E----K~~wKskE~eki~ 89 (473)
.=+++.| ...++++- +.-+.+-|-+-...++-+.+.+.....++.+|++.+-- + ..---.|+.+.++
T Consensus 363 ~r~~q~lke~~k~~~~---ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk 439 (716)
T KOG4593|consen 363 ERARQLLKEELKQVAG---ITEEETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLK 439 (716)
T ss_pred HHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHH
Confidence 3344444 33444333 33333444455556666777777777777777665431 1 2223356677788
Q ss_pred HHHHHHHHH-HHH----HHHhhhhh--hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHhhhhHHHhH
Q 045851 90 AIVDELKDE-LSK----ERKSRKQI--DFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEES--KTMRIREEVEEER 160 (473)
Q Consensus 90 a~i~slk~E-Le~----ERk~Rkr~--E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaRellE~v--es~k~reE~eeER 160 (473)
+.|+.+..- ++. +=-.+.=. ..-+.+|..++.+..+.+...-+++..-|+.++++-+. .-.+=.+.+++|-
T Consensus 440 ~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En 519 (716)
T KOG4593|consen 440 GLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEEN 519 (716)
T ss_pred HHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 877665421 111 11111111 12345789999999999999999999999999985333 2233344456666
Q ss_pred HHHHhhhhhhhh-----------hhhhhHhhh-hhhhhhhhHHHHHHHHHHHHHHh
Q 045851 161 NMLQLAEIWREE-----------RVQMKLVDA-KLALEHKYSQINKLVEELENFLM 204 (473)
Q Consensus 161 ~MLqmAEvWREE-----------RVQMKL~eA-k~~leeK~s~ldkL~~elE~FL~ 204 (473)
.+|.+ .+-+-. =|||..-=+ +.... +-..+..|++|+++-..
T Consensus 520 ~rLr~-~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~-~k~~~e~LqaE~~~lk~ 573 (716)
T KOG4593|consen 520 DRLRA-QLERRLLQGDYEENITRVLHMSTNPTSKARQI-KKNRLEELQAELERLKE 573 (716)
T ss_pred HHHHH-HHHHHHHhhhhhhhccceeeecCCchHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 55551 110000 123322222 22222 33366788888887666
No 30
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=79.08 E-value=11 Score=41.73 Aligned_cols=58 Identities=24% Similarity=0.301 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 045851 39 SALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSK 115 (473)
Q Consensus 39 ~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 115 (473)
.-|+.-++.||++-++...|+...+.+ +-.|+. .-+++-..|-+|||+|..++.-++|
T Consensus 510 ~llkva~dnar~qekQiq~Ek~ELkmd-------~lrere------------lreslekql~~ErklR~~~qkr~kk 567 (641)
T KOG3915|consen 510 GLLKVAIDNARAQEKQIQLEKTELKMD-------FLRERE------------LRESLEKQLAMERKLRAIVQKRLKK 567 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677788888777766655433322 333333 2234445677788888766554443
No 31
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=77.82 E-value=25 Score=29.09 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHH
Q 045851 36 SFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSK 101 (473)
Q Consensus 36 Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ 101 (473)
+.|.+|+.-|++|-.+|.-...+.....++=+.+++++.+ ..-+-.++++-+..++.||+.
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~-----a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD-----AYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999988888888888888888866 234667777777777777654
No 32
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=77.80 E-value=75 Score=31.26 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=27.3
Q ss_pred hhhchhhHHHHHHHHHHhHhhhhhhhHH---HHHHHHHHHHHHHHHHHHhhh
Q 045851 59 HRSSKKKYENLVRKLREERNSWYVRKHY---KMEAIVDELKDELSKERKSRK 107 (473)
Q Consensus 59 ~~s~~~eie~L~KqlaEEK~~wKskE~e---ki~a~i~slk~ELe~ERk~Rk 107 (473)
.++..++|..|...|..||..|..+|.. ++...+..+...++.|+..|.
T Consensus 123 ~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~Ek~~Re 174 (247)
T PF06705_consen 123 NQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQEKIEKEKNTRE 174 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666653 333444555555555555543
No 33
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=77.37 E-value=1.9e+02 Score=35.73 Aligned_cols=73 Identities=18% Similarity=0.153 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhhchhhHHHHHHHHHHh--HhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 045851 49 RLRIHELEDEHRSSKKKYENLVRKLREE--RNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELA 121 (473)
Q Consensus 49 r~rI~eL~~E~~s~~~eie~L~KqlaEE--K~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELa 121 (473)
++.++.|+++-+..+.+++.+.+....- ....-.+.+..+.++.++++.|.++++|+|++.+-+.+.|-.++.
T Consensus 507 ~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e 581 (1317)
T KOG0612|consen 507 EAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE 581 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh
Confidence 3344444444444444444443332211 112223455667788899999999999999999999998887776
No 34
>PRK09039 hypothetical protein; Validated
Probab=77.24 E-value=99 Score=32.36 Aligned_cols=138 Identities=19% Similarity=0.227 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHH
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFV 117 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 117 (473)
|+.++.||+..+++|.+|=.--...+. ....+...|..|+..|+.=+..|.+++.....+.
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~-------------------~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~ 108 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQ-------------------GNQDLQDSVANLRASLSAAEAERSRLQALLAELA 108 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 789999999999999885322221111 2233444445555555544445555555444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHhhhhHHHhHHHHHhhhhhhhhhhhhhHhhhhhhhhhhhHHHHHH
Q 045851 118 NELAKAESSAKQFMQYYEEEKRARQLLEES--KTMRIREEVEEERNMLQLAEIWREERVQMKLVDAKLALEHKYSQINKL 195 (473)
Q Consensus 118 ~ELaE~Kss~~~~lkelE~ErkaRellE~v--es~k~reE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL 195 (473)
....+++..+...-.+|..++. +..+. ...+++.+++.=|.- + .++|.-|.+++....+....++.|
T Consensus 109 ~~~~~~~~~~~~l~~~L~~~k~---~~se~~~~V~~L~~qI~aLr~Q--l------a~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 109 GAGAAAEGRAGELAQELDSEKQ---VSARALAQVELLNQQIAALRRQ--L------AALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred hhcchHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333222222221 11111 223344444322222 2 245677777777777778888888
Q ss_pred HHHHHHHHhh
Q 045851 196 VEELENFLMS 205 (473)
Q Consensus 196 ~~elE~FL~s 205 (473)
..+|++=|..
T Consensus 178 ~~~L~~a~~~ 187 (343)
T PRK09039 178 GRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHH
Confidence 8888887755
No 35
>PLN03188 kinesin-12 family protein; Provisional
Probab=77.18 E-value=1.8e+02 Score=36.13 Aligned_cols=69 Identities=17% Similarity=0.309 Sum_probs=43.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchh---hHHHH-----------HHHHH--HhHhhhhhhhHHHHHHHHH
Q 045851 30 DQVTTFSFVSALQAELVQARLRIHELEDEHRSSKK---KYENL-----------VRKLR--EERNSWYVRKHYKMEAIVD 93 (473)
Q Consensus 30 q~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~---eie~L-----------~Kqla--EEK~~wKskE~eki~a~i~ 93 (473)
-+.--|+|.--|++||+-.|.+..+|..|-.+.|+ |++.- +-|++ +||..-=---|-+|...|+
T Consensus 1059 ~es~wislteelr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~ 1138 (1320)
T PLN03188 1059 AESKWISLAEELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGID 1138 (1320)
T ss_pred HhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888999999999998888888777765 33332 33333 2443333344555666666
Q ss_pred HHHHH
Q 045851 94 ELKDE 98 (473)
Q Consensus 94 slk~E 98 (473)
+||..
T Consensus 1139 dvkka 1143 (1320)
T PLN03188 1139 DVKKA 1143 (1320)
T ss_pred HHHHH
Confidence 66544
No 36
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=76.86 E-value=1.6e+02 Score=34.56 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=32.1
Q ss_pred hhhhhhhhhhh--HhhhhhhhhhhhHHHHHHHHHHHHHHhh
Q 045851 167 EIWREERVQMK--LVDAKLALEHKYSQINKLVEELENFLMS 205 (473)
Q Consensus 167 EvWREERVQMK--L~eAk~~leeK~s~ldkL~~elE~FL~s 205 (473)
++-+-....|| +..++..|..|.+.+..|+.+|++-...
T Consensus 276 e~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~ 316 (775)
T PF10174_consen 276 EVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQ 316 (775)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666777888 9999999999999999999999865544
No 37
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=76.79 E-value=1.5e+02 Score=34.25 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 045851 42 QAELVQARLRIHELE 56 (473)
Q Consensus 42 k~EL~~Ar~rI~eL~ 56 (473)
+.++...+.++..+.
T Consensus 293 ~~~~~~~~~~~~~~~ 307 (1164)
T TIGR02169 293 KEKIGELEAEIASLE 307 (1164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 38
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=76.57 E-value=2.1e+02 Score=36.74 Aligned_cols=41 Identities=34% Similarity=0.356 Sum_probs=26.1
Q ss_pred HHHHhhhhhhhhhhh-hhHhhhhhhhhhhh-----------------HHHHHHHHHHHH
Q 045851 161 NMLQLAEIWREERVQ-MKLVDAKLALEHKY-----------------SQINKLVEELEN 201 (473)
Q Consensus 161 ~MLqmAEvWREERVQ-MKL~eAk~~leeK~-----------------s~ldkL~~elE~ 201 (473)
.--.+|..|.+.+-| |.|.+++.+..... +++..|..+|+.
T Consensus 1368 ~~~rL~~~~~e~~~q~~el~~~~~~~~~~~e~t~rk~e~~~~k~~~~~e~~sl~eeL~e 1426 (1822)
T KOG4674|consen 1368 LKTRLAAALSEKNAQELELSDKKKAHELMQEDTSRKLEKLKEKLELSEELESLKEELEE 1426 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334577888888888 77766665433222 566677777755
No 39
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.60 E-value=1.7e+02 Score=35.93 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=21.7
Q ss_pred hhhhhhHhhhhhhhhhhhHHHHHHHHHHHH
Q 045851 172 ERVQMKLVDAKLALEHKYSQINKLVEELEN 201 (473)
Q Consensus 172 ERVQMKL~eAk~~leeK~s~ldkL~~elE~ 201 (473)
|-+|-+|..+...+.++.+.|+.+..+|..
T Consensus 524 e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~ 553 (1293)
T KOG0996|consen 524 EELKGKLLASSESLKEKKTELDDLKEELPS 553 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455666666666777788888888777766
No 40
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=75.58 E-value=2.2e+02 Score=35.47 Aligned_cols=19 Identities=32% Similarity=0.305 Sum_probs=8.8
Q ss_pred chhhHHHHHHHHHHHHHHH
Q 045851 33 TTFSFVSALQAELVQARLR 51 (473)
Q Consensus 33 s~~Slv~aLk~EL~~Ar~r 51 (473)
.+++-+..|+.|-.+|+.+
T Consensus 1539 ~di~ra~~L~s~A~~a~~~ 1557 (1758)
T KOG0994|consen 1539 GDIARAENLQSEAERARSR 1557 (1758)
T ss_pred hhHHHHHHHHHHHHHHHhH
Confidence 3444444454444444443
No 41
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=75.40 E-value=69 Score=29.63 Aligned_cols=75 Identities=24% Similarity=0.351 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 045851 38 VSALQAELVQARLR-------IHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQID 110 (473)
Q Consensus 38 v~aLk~EL~~Ar~r-------I~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E 110 (473)
+.+|++|.+.|..+ |++|+++.-...++|..|-+++.-= -.+-+++...|..++..|+.--+....+|
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~l-----E~eld~~~~~l~~~k~~lee~~~~~~~~E 76 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQL-----EEELDKLEEQLKEAKEKLEESEKRKSNAE 76 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence 34677776666555 4555555555566777776655321 12568999999999999999999999999
Q ss_pred HHhHHHH
Q 045851 111 FLNSKFV 117 (473)
Q Consensus 111 ~ln~KL~ 117 (473)
.|++|+.
T Consensus 77 ~l~rriq 83 (143)
T PF12718_consen 77 QLNRRIQ 83 (143)
T ss_pred HHHhhHH
Confidence 9999974
No 42
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=75.31 E-value=38 Score=29.74 Aligned_cols=65 Identities=12% Similarity=0.232 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHh
Q 045851 83 RKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAES-------------SAKQFMQYYEEEKRARQLLEES 147 (473)
Q Consensus 83 kE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Ks-------------s~~~~lkelE~ErkaRellE~v 147 (473)
....++..++.++.++|.+-++.|.++-..|+.|+.|+.+.+. .+.++-++|..+|+...+|-.|
T Consensus 3 ~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r~~~~v~k~v 80 (106)
T PF05837_consen 3 LEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSRQRWRVMKNV 80 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778889999999999999999999999999999876543 3333444444455544444444
No 43
>PRK14154 heat shock protein GrpE; Provisional
Probab=75.07 E-value=63 Score=32.10 Aligned_cols=71 Identities=13% Similarity=0.188 Sum_probs=54.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHH
Q 045851 31 QVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSK 101 (473)
Q Consensus 31 ~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ 101 (473)
|-+..+-+..|+.+|...+.++.+|...-.....+++.+.|....|+..-+..--+++-..+-.+.+.|+.
T Consensus 47 ~~~~~~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeR 117 (208)
T PRK14154 47 EGLEFPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIH 117 (208)
T ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Confidence 44677789999999999999999998888888889999999888887766655555555555555555543
No 44
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=73.92 E-value=56 Score=37.83 Aligned_cols=27 Identities=7% Similarity=0.179 Sum_probs=13.7
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 045851 109 IDFLNSKFVNELAKAESSAKQFMQYYE 135 (473)
Q Consensus 109 ~E~ln~KL~~ELaE~Kss~~~~lkelE 135 (473)
.+.+.++.-..|.++|..+.+.++++.
T Consensus 568 ~~~~~~~a~~~l~~a~~~~~~~i~~lk 594 (782)
T PRK00409 568 LEEAEKEAQQAIKEAKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555554
No 45
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=73.71 E-value=2.2e+02 Score=34.60 Aligned_cols=92 Identities=13% Similarity=0.212 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHH
Q 045851 39 SALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVN 118 (473)
Q Consensus 39 ~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ 118 (473)
.+|+.+|..+..+|..+..++... +..+++....-.. -.++.......+...+. .-++++.....+..++..
T Consensus 603 e~L~~~l~~~~~~l~~~~~~~~~~----e~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~ 674 (1201)
T PF12128_consen 603 EELRERLEQAEDQLQSAEERQEEL----EKQLKQINKKIEE-LKREITQAEQELKQAEQ---DLQRLKNEREQLKQEIEE 674 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-HHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHH
Confidence 477777777777777776554433 3333333221111 11222233333333322 224455555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045851 119 ELAKAESSAKQFMQYYEEEK 138 (473)
Q Consensus 119 ELaE~Kss~~~~lkelE~Er 138 (473)
++.+.+..+...+..++.+-
T Consensus 675 ~~~~~~~~~~~~l~~l~~~l 694 (1201)
T PF12128_consen 675 AKEERKEQIEEQLNELEEEL 694 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666555443
No 46
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=73.50 E-value=49 Score=38.25 Aligned_cols=58 Identities=22% Similarity=0.294 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHH
Q 045851 42 QAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDEL 99 (473)
Q Consensus 42 k~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~EL 99 (473)
+.++++.+..+..+.+|-...+.+++...++|.++|..+..+.++++..+|..++.++
T Consensus 524 ~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~ 581 (771)
T TIGR01069 524 EKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEV 581 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444455555555555555554444444444444444443
No 47
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=73.11 E-value=44 Score=36.23 Aligned_cols=85 Identities=12% Similarity=0.118 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh--------hhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 045851 37 FVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERN--------SWYVRKHYKMEAIVDELKDELSKERKSRKQ 108 (473)
Q Consensus 37 lv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~--------~wKskE~eki~a~i~slk~ELe~ERk~Rkr 108 (473)
-|.+|+.+|..++..+..+..+.......+. |+..+.. .. .+....-..+.+.++.+.+++..-+..++.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAK-FLEDIRE-GLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDRE 149 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh-hhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999888888888777763 4444443 11 111223456777777777777655554444
Q ss_pred hhHHhHHHHHHHHHH
Q 045851 109 IDFLNSKFVNELAKA 123 (473)
Q Consensus 109 ~E~ln~KL~~ELaE~ 123 (473)
++.-=++|.++|.++
T Consensus 150 ~~~~~~~~~~~l~~l 164 (525)
T TIGR02231 150 AERRIRELEKQLSEL 164 (525)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 48
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=73.04 E-value=39 Score=38.88 Aligned_cols=15 Identities=20% Similarity=0.538 Sum_probs=8.0
Q ss_pred HHHhhhhhhHHhHHH
Q 045851 102 ERKSRKQIDFLNSKF 116 (473)
Q Consensus 102 ERk~Rkr~E~ln~KL 116 (473)
||+.++.++.++.+|
T Consensus 634 Er~~~~EL~~~~~~l 648 (717)
T PF10168_consen 634 EREFKKELERMKDQL 648 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555543
No 49
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=72.97 E-value=93 Score=30.04 Aligned_cols=133 Identities=23% Similarity=0.326 Sum_probs=86.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhc----------------hhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHH
Q 045851 33 TTFSFVSALQAELVQARLRIHELEDEHRSS----------------KKKYENLVRKLREERNSWYVRKHYKMEAIVDELK 96 (473)
Q Consensus 33 s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~----------------~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk 96 (473)
-...||..|++.+.+-|.++.+|++--.+. -.+|+.++.+|.||+. ++.+-.-+ -.-++
T Consensus 13 ~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqq--R~~~L~qv---N~lLR 87 (182)
T PF15035_consen 13 RQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQ--RSEELAQV---NALLR 87 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHH--hHHHHHHH---HHHHH
Confidence 345679999999999999999998866322 2578999999999876 55443333 44456
Q ss_pred HHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhHH-HhHHHHHhhhhhhhh-hh
Q 045851 97 DELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVE-EERNMLQLAEIWREE-RV 174 (473)
Q Consensus 97 ~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaRellE~ves~k~reE~e-eER~MLqmAEvWREE-RV 174 (473)
+.|+..+ ..|..|..+|..+...+..+..+|+.....-..-+. .....+. +-.+ |...||+= .|
T Consensus 88 eQLEq~~-------~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~----~~~~y~~~eh~r---ll~LWr~v~~l 153 (182)
T PF15035_consen 88 EQLEQAR-------KANEALQEDLQKLTQDWERLRDELEQKEAEWREEEE----NFNQYLSSEHSR---LLSLWREVVAL 153 (182)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhcccccH---HHHHHHHHHHH
Confidence 6777655 468889999999999999888877654432221111 1222222 2223 44678873 44
Q ss_pred hhhHhhhhhh
Q 045851 175 QMKLVDAKLA 184 (473)
Q Consensus 175 QMKL~eAk~~ 184 (473)
.-.++|-|.+
T Consensus 154 Rr~f~elr~~ 163 (182)
T PF15035_consen 154 RRQFAELRTA 163 (182)
T ss_pred HHHHHHHHHH
Confidence 4445555544
No 50
>PRK10884 SH3 domain-containing protein; Provisional
Probab=70.29 E-value=88 Score=30.78 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=16.1
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHH
Q 045851 109 IDFLNSKFVNELAKAESSAKQFMQY 133 (473)
Q Consensus 109 ~E~ln~KL~~ELaE~Kss~~~~lke 133 (473)
++.-|.+|..||..++.-...+-.+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777776655544333
No 51
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=70.05 E-value=27 Score=31.38 Aligned_cols=48 Identities=29% Similarity=0.432 Sum_probs=38.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhh
Q 045851 30 DQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRK 84 (473)
Q Consensus 30 q~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE 84 (473)
.|+.++-.+.+|+.++...+..|.+|..+..+.+.. |...+.+|...+
T Consensus 53 ~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~-------l~~~e~sw~~qk 100 (132)
T PF07926_consen 53 KHAEDIKELQQLREELQELQQEINELKAEAESAKAE-------LEESEASWEEQK 100 (132)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHH
Confidence 577888889999999999999999998887777666 566677777543
No 52
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=69.92 E-value=2.7e+02 Score=34.07 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 045851 34 TFSFVSALQAELVQARLRIHELEDEHRSSK 63 (473)
Q Consensus 34 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~ 63 (473)
.++.|..+..|+...+.+|.+|..+...+.
T Consensus 790 ~v~~i~r~~~ei~~l~~qie~l~~~l~~~~ 819 (1311)
T TIGR00606 790 DVTIMERFQMELKDVERKIAQQAAKLQGSD 819 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 445556667777777777777766666443
No 53
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.56 E-value=1.6e+02 Score=35.05 Aligned_cols=58 Identities=28% Similarity=0.377 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 045851 42 QAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDF 111 (473)
Q Consensus 42 k~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ 111 (473)
++||++-|. -|+.++|..+.+++.. ||..|-.|++++-. +.-|.+||.|+.+-|+-|.
T Consensus 326 qaELerRRq---~leeqqqreree~eqk------EreE~ekkererqE---qErk~qlElekqLerQRei 383 (1118)
T KOG1029|consen 326 QAELERRRQ---ALEEQQQREREEVEQK------EREEEEKKERERQE---QERKAQLELEKQLERQREI 383 (1118)
T ss_pred hHHHHHHHH---HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 588887553 3555555555554433 34444445554433 2334566666666655443
No 54
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=69.53 E-value=86 Score=28.21 Aligned_cols=90 Identities=19% Similarity=0.239 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHH--HHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKL--REERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSK 115 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~Kql--aEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 115 (473)
+..|+.|+..++..+..........+.+++...+.. +.++...----|-..-..|..+|.++..-+.....+..--..
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~ 84 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAES 84 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888777777655543 223332222233334445666666666655444444443333
Q ss_pred HHHHHHHHHHHH
Q 045851 116 FVNELAKAESSA 127 (473)
Q Consensus 116 L~~ELaE~Kss~ 127 (473)
...+|...+.+.
T Consensus 85 a~~~l~~~e~sw 96 (132)
T PF07926_consen 85 AKAELEESEASW 96 (132)
T ss_pred HHHHHHHHHHhH
Confidence 334444433333
No 55
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=68.62 E-value=2.2e+02 Score=32.68 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045851 38 VSALQAELVQARLRIHELEDE 58 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E 58 (473)
+..++.++.+++.++..|..+
T Consensus 728 ~~~~~~~~~~~~~~~~~l~~e 748 (1179)
T TIGR02168 728 ISALRKDLARLEAEVEQLEER 748 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 56
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.21 E-value=1.8e+02 Score=33.66 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQI 109 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~ 109 (473)
+.+|+.+|++--.+|..|+++. |+|.|+|++=-++-+.-----...-+-.+|.-++.+.-.-+.+
T Consensus 334 ~~~~~~~~~~~~Tr~Er~Er~~-------D~L~rri~~~~~~~~R~~~s~A~~K~~E~K~~~~~~~~~~r~i 398 (852)
T KOG4787|consen 334 LELAESQVQHLNTKIERLEKTN-------DHLNKKIVELEADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMI 398 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHhhhhcccchHHHHHHhhhhhcChHhHhHHHHHH
Confidence 6788888888888888887654 8999999886555443211112233445666666665554443
No 57
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=67.71 E-value=1.2e+02 Score=30.01 Aligned_cols=45 Identities=24% Similarity=0.476 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045851 95 LKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKR 139 (473)
Q Consensus 95 lk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lkelE~Erk 139 (473)
|+..|+.|+.-.++.|.-|+|+...|.|-+.-.+.++--|-.|+|
T Consensus 146 Lkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K~~~l~Lv~E~k 190 (192)
T PF09727_consen 146 LKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKLKSFVLMLVKERK 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999999998888888888877776
No 58
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=66.21 E-value=1.3e+02 Score=34.56 Aligned_cols=46 Identities=13% Similarity=0.278 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhH---HhHHHHHHHHHHHHHHHH
Q 045851 84 KHYKMEAIVDELKDELSKERKSRKQIDF---LNSKFVNELAKAESSAKQ 129 (473)
Q Consensus 84 E~eki~a~i~slk~ELe~ERk~Rkr~E~---ln~KL~~ELaE~Kss~~~ 129 (473)
+-+++++-+..++.++..+-+.++.++. -+.+|-++|.+.+.-...
T Consensus 451 eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~ 499 (652)
T COG2433 451 EIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEE 499 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333333332 223344444444443333
No 59
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=65.99 E-value=1.1e+02 Score=27.97 Aligned_cols=40 Identities=23% Similarity=0.300 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHH
Q 045851 36 SFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLRE 75 (473)
Q Consensus 36 Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaE 75 (473)
|-|+.+..|+...+.++..|.+++.....+|=.|++...+
T Consensus 23 s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~ 62 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEE 62 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4478888899999999999999999999998888877643
No 60
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=65.55 E-value=42 Score=37.06 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 045851 113 NSKFVNELAKAESSAKQFMQYYEE 136 (473)
Q Consensus 113 n~KL~~ELaE~Kss~~~~lkelE~ 136 (473)
|..+-+||..++.++++|-++||.
T Consensus 304 ~e~~rkelE~lR~~L~kAEkele~ 327 (575)
T KOG4403|consen 304 NETSRKELEQLRVALEKAEKELEA 327 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445777777777766555543
No 61
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=65.46 E-value=1.7e+02 Score=35.57 Aligned_cols=90 Identities=18% Similarity=0.287 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 045851 36 SFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSK 115 (473)
Q Consensus 36 Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 115 (473)
..+.+++.|.......|++-+..-+..+..++.+-|++++.+..- ...+..-+..+..+++.=.+....+|.++.+
T Consensus 344 ~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~----~~~~~~~~~e~e~k~~~L~~evek~e~~~~~ 419 (1074)
T KOG0250|consen 344 KDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT----NNELGSELEERENKLEQLKKEVEKLEEQINS 419 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444555556666666665554321 1223333333444444444445567777777
Q ss_pred HHHHHHHHHHHHHH
Q 045851 116 FVNELAKAESSAKQ 129 (473)
Q Consensus 116 L~~ELaE~Kss~~~ 129 (473)
|..|+-+++..+..
T Consensus 420 L~~e~~~~~~~~~~ 433 (1074)
T KOG0250|consen 420 LREELNEVKEKAKE 433 (1074)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777665554
No 62
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=65.14 E-value=2.3e+02 Score=33.02 Aligned_cols=20 Identities=25% Similarity=0.322 Sum_probs=14.0
Q ss_pred chhhHHHHHHHHHHhHhhhh
Q 045851 62 SKKKYENLVRKLREERNSWY 81 (473)
Q Consensus 62 ~~~eie~L~KqlaEEK~~wK 81 (473)
...+++.|+..|.+++....
T Consensus 514 ~~~~~~~li~~l~~~~~~~e 533 (782)
T PRK00409 514 DKEKLNELIASLEELERELE 533 (782)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 34578888888887766443
No 63
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.51 E-value=3.4e+02 Score=33.24 Aligned_cols=83 Identities=16% Similarity=0.154 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHH---HHHHHHhHhhhhhh--hHHHHHHHHHHHHHHHHH----HHHhhh
Q 045851 37 FVSALQAELVQARLRIHELEDEHRSSKKKYENL---VRKLREERNSWYVR--KHYKMEAIVDELKDELSK----ERKSRK 107 (473)
Q Consensus 37 lv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L---~KqlaEEK~~wKsk--E~eki~a~i~slk~ELe~----ERk~Rk 107 (473)
-+.+++.+|...+..+..+..+....+.+|..| +-.+.+++..-..+ .+..+...|..++.+++. -..++.
T Consensus 830 ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~ 909 (1311)
T TIGR00606 830 EKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKE 909 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666688888888888888 66665555543332 223344444444444432 122344
Q ss_pred hhhHHhHHHHHH
Q 045851 108 QIDFLNSKFVNE 119 (473)
Q Consensus 108 r~E~ln~KL~~E 119 (473)
.++.+..++...
T Consensus 910 ~~~~~~~~~~~~ 921 (1311)
T TIGR00606 910 QDSPLETFLEKD 921 (1311)
T ss_pred HhhhhhHHHHHH
Confidence 444444444333
No 64
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=63.87 E-value=3.3e+02 Score=32.91 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=18.5
Q ss_pred hhhhhHhhhhhhhhhhhHHHHHHHHHHHHHHhh
Q 045851 173 RVQMKLVDAKLALEHKYSQINKLVEELENFLMS 205 (473)
Q Consensus 173 RVQMKL~eAk~~leeK~s~ldkL~~elE~FL~s 205 (473)
.++.++...+..+++....+..|..+|..+=..
T Consensus 853 ~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~ 885 (1163)
T COG1196 853 ELEKELEELKEELEELEAEKEELEDELKELEEE 885 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666555554433
No 65
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=63.77 E-value=1.7e+02 Score=29.53 Aligned_cols=13 Identities=15% Similarity=0.143 Sum_probs=8.3
Q ss_pred HHHHHHHhhccCc
Q 045851 218 AELIIRAVKLLNI 230 (473)
Q Consensus 218 ae~~rqs~~Sv~~ 230 (473)
.+.++++|+++++
T Consensus 231 ~e~ir~~le~~d~ 243 (269)
T cd07673 231 HEEFINNMANTTV 243 (269)
T ss_pred HHHHHHHHHhCCH
Confidence 4456777777654
No 66
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=63.24 E-value=92 Score=35.74 Aligned_cols=64 Identities=20% Similarity=0.232 Sum_probs=29.5
Q ss_pred HHHHHhHhhhhhhhHHHHHHH-HHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045851 71 RKLREERNSWYVRKHYKMEAI-VDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLE 145 (473)
Q Consensus 71 KqlaEEK~~wKskE~eki~a~-i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaRellE 145 (473)
.++.|++..+...|+.+|+.. .+.-+-++-.||+-+.|++..--+|. .-.|-||+||-.|+.||
T Consensus 612 dk~kE~Rr~Re~eer~RirE~rerEqR~~a~~ERee~eRl~~erlrle-----------~qRQrLERErmErERLE 676 (940)
T KOG4661|consen 612 DKRKEERRRREAEERQRIREEREREQRRKAAVEREELERLKAERLRLE-----------RQRQRLERERMERERLE 676 (940)
T ss_pred HhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence 345566665666666665532 22223333333333333222222222 22456677776666655
No 67
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=63.02 E-value=2.1e+02 Score=30.66 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 045851 125 SSAKQFMQYYEEEKRARQLLEES 147 (473)
Q Consensus 125 ss~~~~lkelE~ErkaRellE~v 147 (473)
.+...++.|+++.|..+.-|+.+
T Consensus 346 ~aY~~LL~Ev~RRr~~~~k~~~i 368 (412)
T PF04108_consen 346 SAYDSLLLEVERRRAVRDKMKKI 368 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666655
No 68
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=62.68 E-value=39 Score=28.21 Aligned_cols=57 Identities=23% Similarity=0.446 Sum_probs=40.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHH
Q 045851 32 VTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELK 96 (473)
Q Consensus 32 ~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk 96 (473)
...+--|..|++|++.-+..-..|..+....+.+ ..++..|+.+|+ ++|++.|.-|.
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~e----n~~L~~e~~~~~----~rl~~LL~kl~ 70 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNNELKEENEELKEE----NEQLKQERNAWQ----ERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHH----HHHHHHHHhhh
Confidence 3455668899999998888888887666555554 556668888887 56777666554
No 69
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.37 E-value=3.7e+02 Score=32.94 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=81.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHh
Q 045851 34 TFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLN 113 (473)
Q Consensus 34 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln 113 (473)
.+.-+..|..++..++.+|++...-.+....+|.-|=+.+.+-+..+.++-.| ...-|+-.+..++..++-=++.+..-
T Consensus 739 ~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkd-l~keik~~k~~~e~~~~~~ek~~~e~ 817 (1174)
T KOG0933|consen 739 LLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKD-LEKEIKTAKQRAEESSKELEKRENEY 817 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557888899999999999988887777777777777777776665554444 44557777788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 045851 114 SKFVNELAKAESSAKQFMQYYEEEK-RARQLLEES 147 (473)
Q Consensus 114 ~KL~~ELaE~Kss~~~~lkelE~Er-kaRellE~v 147 (473)
.+|.-|..+++.....+-+.++.=. ..+.|-.++
T Consensus 818 e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~ 852 (1174)
T KOG0933|consen 818 ERLQLEHEELEKEISSLKQQLEQLEKQISSLKSEL 852 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887777766665433 333444444
No 70
>PRK14140 heat shock protein GrpE; Provisional
Probab=61.98 E-value=1.6e+02 Score=28.77 Aligned_cols=67 Identities=15% Similarity=0.234 Sum_probs=44.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHH
Q 045851 33 TTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDEL 99 (473)
Q Consensus 33 s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~EL 99 (473)
+.--+|..|+.+|...+.+|.+|...-....-+++.+.|....|+...+.--..++-..+-.+-+-|
T Consensus 34 ~~~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnL 100 (191)
T PRK14140 34 SEAELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNF 100 (191)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445677888888888888888877777777777777777777776555544444444444444444
No 71
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=61.73 E-value=2.9e+02 Score=31.55 Aligned_cols=90 Identities=20% Similarity=0.269 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHh---HH
Q 045851 39 SALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLN---SK 115 (473)
Q Consensus 39 ~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln---~K 115 (473)
++|+.-+..+++-+.+++.-.+..-+.|+.|-..+ ..|--|.++|+..+++|+.-++--+=.=...|.+| -+
T Consensus 269 ~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Ei-----e~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~ 343 (581)
T KOG0995|consen 269 ARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEI-----EEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNK 343 (581)
T ss_pred HHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 44666666666666666555554444433333333 12334667777777777776654443333344443 36
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045851 116 FVNELAKAESSAKQFMQY 133 (473)
Q Consensus 116 L~~ELaE~Kss~~~~lke 133 (473)
|-++|.++++...+..|+
T Consensus 344 l~r~l~~i~~~~d~l~k~ 361 (581)
T KOG0995|consen 344 LKRELNKIQSELDRLSKE 361 (581)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666777666666555554
No 72
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=61.68 E-value=2.5e+02 Score=33.61 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=18.3
Q ss_pred CccccCCCCCcchHHHHHhhhcccc
Q 045851 3 GVTKWDPGCSKTAREAYCLYNHVKL 27 (473)
Q Consensus 3 ~aTKWd~~~lkTs~ellkvlnriwl 27 (473)
+-.+|...--.|..++......|++
T Consensus 862 ~r~e~~~~~~~~~~~id~lv~~IK~ 886 (1259)
T KOG0163|consen 862 GREEIISGANSTYRQIDDLVKKIKM 886 (1259)
T ss_pred chHHHHhhhhhHHHHHHHHHHHhcc
Confidence 4557777777777788888888874
No 73
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=60.84 E-value=1.2e+02 Score=34.91 Aligned_cols=67 Identities=19% Similarity=0.288 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 045851 40 ALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQ 108 (473)
Q Consensus 40 aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr 108 (473)
.|+.|-..-...|.+|.++--..+.+++.|-+.+. --.|+.+|-.-...-|..|..+|..+++....
T Consensus 433 ~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~--~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~ 499 (652)
T COG2433 433 RLEEENSELKRELEELKREIEKLESELERFRREVR--DKVRKDREIRARDRRIERLEKELEEKKKRVEE 499 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333444444444443 34677777777777888888888877665433
No 74
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=59.33 E-value=3.4e+02 Score=32.89 Aligned_cols=74 Identities=20% Similarity=0.104 Sum_probs=38.2
Q ss_pred cchHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHH
Q 045851 13 KTAREAYCLYNHVKLLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIV 92 (473)
Q Consensus 13 kTs~ellkvlnriwleEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i 92 (473)
+|..+++..|.|+|++-.. +..|+.+=|--.+....+. +-+-.+--+++++++.-..-..+--+.+..++
T Consensus 713 ~~~~~vl~~Lara~y~~~~-----~~eak~~ll~a~~~~p~~~-----~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~ 782 (1018)
T KOG2002|consen 713 KNRSEVLHYLARAWYEAGK-----LQEAKEALLKARHLAPSNT-----SVKFNLALVLKKLAESILRLEKRTLEEVLEAV 782 (1018)
T ss_pred cCCHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHhCCccc-----hHHhHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 4667899999999954322 2333322222222222222 23445566667777665544444455555555
Q ss_pred HHHH
Q 045851 93 DELK 96 (473)
Q Consensus 93 ~slk 96 (473)
+.++
T Consensus 783 ~~le 786 (1018)
T KOG2002|consen 783 KELE 786 (1018)
T ss_pred HHHH
Confidence 5443
No 75
>PHA02562 46 endonuclease subunit; Provisional
Probab=59.02 E-value=2.6e+02 Score=30.05 Aligned_cols=74 Identities=11% Similarity=0.180 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 045851 42 QAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELA 121 (473)
Q Consensus 42 k~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELa 121 (473)
+..+..++..|..|..+......+++.+-+.+.+-+.. ....++.++.+++.-.+.+..++.-=.+|-.+|.
T Consensus 173 k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~--------~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~ 244 (562)
T PHA02562 173 KDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKK--------NGENIARKQNKYDELVEEAKTIKAEIEELTDELL 244 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555544444444444333222222111 1123445555555554444444444444444444
Q ss_pred HH
Q 045851 122 KA 123 (473)
Q Consensus 122 E~ 123 (473)
++
T Consensus 245 ~l 246 (562)
T PHA02562 245 NL 246 (562)
T ss_pred HH
Confidence 44
No 76
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=58.60 E-value=36 Score=37.89 Aligned_cols=31 Identities=35% Similarity=0.394 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERN 78 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~ 78 (473)
|+-=|+||..-..|++|| -|.|=|||++|+-
T Consensus 526 iq~Ek~ELkmd~lrerel----------reslekql~~Erk 556 (641)
T KOG3915|consen 526 IQLEKTELKMDFLREREL----------RESLEKQLAMERK 556 (641)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 344455555555555555 2456666666654
No 77
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=58.37 E-value=1.4e+02 Score=26.97 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=29.3
Q ss_pred hHHHHHhhhccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHH
Q 045851 15 AREAYCLYNHVK-LLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVR 71 (473)
Q Consensus 15 s~ellkvlnriw-leEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~K 71 (473)
...+..|+|-|| |.-++..++..-..|...+...+.-+..|.......+.+++.+-+
T Consensus 30 ~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~er 87 (151)
T PF11559_consen 30 EDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELER 87 (151)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777 665555555544455444444444444444444444444444333
No 78
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=58.35 E-value=91 Score=36.10 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHH
Q 045851 86 YKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAK 128 (473)
Q Consensus 86 eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~ 128 (473)
+.|...+.+...||+.++..|+|+|.-+.+|-+.|..++..-.
T Consensus 583 e~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 583 EQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4455567788889999999999999999999888888776443
No 79
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=57.50 E-value=3.5e+02 Score=31.15 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhHHHHH
Q 045851 40 ALQAELVQARLRIHELEDEHRSSKKKYENLV 70 (473)
Q Consensus 40 aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~ 70 (473)
.|+.+++.++..+.++..+....+.+++.+.
T Consensus 681 ~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 711 (1179)
T TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELE 711 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333333333333
No 80
>PRK14139 heat shock protein GrpE; Provisional
Probab=57.41 E-value=77 Score=30.84 Aligned_cols=67 Identities=27% Similarity=0.347 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHH
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFV 117 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 117 (473)
+..|+.+|...+.++.+|........-+++.+.|....|+...+ .....+++
T Consensus 34 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~----------------------------~~a~~~~~ 85 (185)
T PRK14139 34 APALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAH----------------------------KFAIESFA 85 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHH
Confidence 56677788888888888776666666777777777766654222 23455677
Q ss_pred HHHHHHHHHHHHHHH
Q 045851 118 NELAKAESSAKQFMQ 132 (473)
Q Consensus 118 ~ELaE~Kss~~~~lk 132 (473)
++|-.+--.|.+|+.
T Consensus 86 ~~LLpv~DnLerAl~ 100 (185)
T PRK14139 86 ESLLPVKDSLEAALA 100 (185)
T ss_pred HHHhhHHhHHHHHHh
Confidence 777777777776653
No 81
>PRK14145 heat shock protein GrpE; Provisional
Probab=57.26 E-value=81 Score=31.04 Aligned_cols=69 Identities=16% Similarity=0.258 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 045851 36 SFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSK 115 (473)
Q Consensus 36 Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 115 (473)
.-+..|+.+|..++.++.+|...-.....+++.+.|....|+...+ .....+
T Consensus 45 ~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~----------------------------~~a~e~ 96 (196)
T PRK14145 45 DEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMV----------------------------EYGKEQ 96 (196)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHH
Confidence 4467788888888888888877777777777777777766654222 234567
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045851 116 FVNELAKAESSAKQFMQ 132 (473)
Q Consensus 116 L~~ELaE~Kss~~~~lk 132 (473)
|+++|..+--.|.+|+.
T Consensus 97 ~~~~LLpV~DnLerAl~ 113 (196)
T PRK14145 97 VILELLPVMDNFERALA 113 (196)
T ss_pred HHHHHHhHHhHHHHHHh
Confidence 78888887777777653
No 82
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=57.03 E-value=1.2e+02 Score=26.54 Aligned_cols=71 Identities=18% Similarity=0.290 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhH-HHHHHHHHHHHHHHHHHHHhhhh
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKH-YKMEAIVDELKDELSKERKSRKQ 108 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~-eki~a~i~slk~ELe~ERk~Rkr 108 (473)
+..+..+..-.+.++..+..+....+..-..++..+-+-+...+.... ......|..++.+|..+|+.-+=
T Consensus 5 ~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r~~~~v 76 (106)
T PF05837_consen 5 ILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSRQRWRV 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566666666665555555666666555555555444 77888888888888888765543
No 83
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=57.02 E-value=1.5e+02 Score=35.51 Aligned_cols=96 Identities=17% Similarity=0.240 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHHH--HHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHH---h
Q 045851 39 SALQAELVQARLRIHELEDEHRSSKKKYENL--VRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFL---N 113 (473)
Q Consensus 39 ~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L--~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~l---n 113 (473)
-|.+.||..|..+...|-.+.-...+.+.+| ++.-++-+..+---.+-++-+.|+.+.+-|+.-||.-+..|.| |
T Consensus 413 e~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen 492 (1265)
T KOG0976|consen 413 EAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAEN 492 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHH
Confidence 4568899999999999999988888888865 4555566665556677788889999999999999999988876 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045851 114 SKFVNELAKAESSAKQFMQYY 134 (473)
Q Consensus 114 ~KL~~ELaE~Kss~~~~lkel 134 (473)
.|-++-.+++|-.+...--||
T Consensus 493 ~rqakkiefmkEeiQethldy 513 (1265)
T KOG0976|consen 493 ERQAKKIEFMKEEIQETHLDY 513 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666555554444
No 84
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=56.35 E-value=2.6e+02 Score=29.31 Aligned_cols=50 Identities=22% Similarity=0.189 Sum_probs=39.0
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHh
Q 045851 27 LLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREE 76 (473)
Q Consensus 27 leEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEE 76 (473)
|.|-|.++--+-+-|.++|+++..|-+.|+.+.+..+.+++.+-.++..-
T Consensus 36 l~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q 85 (333)
T KOG1853|consen 36 LNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQ 85 (333)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34545555666788999999999999999999999988888777666433
No 85
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=56.00 E-value=2.1e+02 Score=28.22 Aligned_cols=9 Identities=44% Similarity=0.361 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 045851 37 FVSALQAEL 45 (473)
Q Consensus 37 lv~aLk~EL 45 (473)
+...|..++
T Consensus 81 la~~L~~ev 89 (239)
T cd07658 81 LGSALTEEA 89 (239)
T ss_pred HHHHHHHHH
Confidence 334444444
No 86
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=55.86 E-value=2e+02 Score=27.87 Aligned_cols=33 Identities=6% Similarity=0.180 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHH
Q 045851 86 YKMEAIVDELKDELSKERKSRKQIDFLNSKFVN 118 (473)
Q Consensus 86 eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ 118 (473)
..++..|+.++.+++..|+.-......+.....
T Consensus 73 ~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 73 ERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665544443333333333
No 87
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=55.82 E-value=3.6e+02 Score=31.43 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=11.9
Q ss_pred chhhHHHHHHHHHHhHhh
Q 045851 62 SKKKYENLVRKLREERNS 79 (473)
Q Consensus 62 ~~~eie~L~KqlaEEK~~ 79 (473)
...+++.|+.+|.+++..
T Consensus 509 ~~~~~~~li~~L~~~~~~ 526 (771)
T TIGR01069 509 FKEEINVLIEKLSALEKE 526 (771)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 345677777777766553
No 88
>PRK14146 heat shock protein GrpE; Provisional
Probab=55.80 E-value=78 Score=31.42 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 045851 36 SFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSK 115 (473)
Q Consensus 36 Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 115 (473)
.-+..|+.+|+.++.++.+|...-.+...+++.+.|+...|+...+. ....+
T Consensus 54 ~~~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~----------------------------~a~e~ 105 (215)
T PRK14146 54 ETETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRK----------------------------EAVKS 105 (215)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHH
Confidence 33677788888888888888776667777777777777666553332 34556
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045851 116 FVNELAKAESSAKQFMQ 132 (473)
Q Consensus 116 L~~ELaE~Kss~~~~lk 132 (473)
+++.|..+--.|.+|+.
T Consensus 106 ~~~~lLpv~DnlerAl~ 122 (215)
T PRK14146 106 LVSGFLNPIDNLERVGA 122 (215)
T ss_pred HHHHHhhHHhHHHHHHh
Confidence 77777776666666543
No 89
>PRK14158 heat shock protein GrpE; Provisional
Probab=55.75 E-value=1.1e+02 Score=30.12 Aligned_cols=73 Identities=14% Similarity=0.213 Sum_probs=48.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 045851 32 VTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDF 111 (473)
Q Consensus 32 ~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ 111 (473)
+..-.-+..|+.+|.....++.+|...-....-+++.+.|+...|+...+ ..
T Consensus 36 ~~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~----------------------------~~ 87 (194)
T PRK14158 36 VAAADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELL----------------------------KY 87 (194)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HH
Confidence 33445577888888888888888876666666777777777666544222 22
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 045851 112 LNSKFVNELAKAESSAKQFMQ 132 (473)
Q Consensus 112 ln~KL~~ELaE~Kss~~~~lk 132 (473)
...+++++|..+--.|.+|+.
T Consensus 88 a~~~~~~~lLpV~DnLerAl~ 108 (194)
T PRK14158 88 GNESLILEILPAVDNMERALD 108 (194)
T ss_pred HHHHHHHHHHhHHhHHHHHHh
Confidence 456777777777777766654
No 90
>PRK14143 heat shock protein GrpE; Provisional
Probab=55.25 E-value=2.4e+02 Score=28.54 Aligned_cols=45 Identities=16% Similarity=0.289 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 045851 37 FVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWY 81 (473)
Q Consensus 37 lv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wK 81 (473)
-+..|+.+|...+..+.+|...-.+...+++.|.|+...|+...+
T Consensus 68 ~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~ 112 (238)
T PRK14143 68 RLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLR 112 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777777777777765555556666666666665554333
No 91
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=55.01 E-value=2e+02 Score=27.60 Aligned_cols=68 Identities=16% Similarity=0.238 Sum_probs=46.0
Q ss_pred HHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045851 68 NLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEES 147 (473)
Q Consensus 68 ~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaRellE~v 147 (473)
..+++.-+||..-|..|.++- .++|-..|+++.+.-+.+-+.+..|....+ .++.+.-+|...|.+.+
T Consensus 61 ~ai~~QieEk~r~k~~E~err------~~EE~~EE~Rl~rere~~q~~~E~E~~~~~------~KEe~~~~k~~~l~e~~ 128 (157)
T PF15236_consen 61 RAIKQQIEEKRRQKQEEEERR------RREEEEEEERLAREREELQRQFEEEQRKQR------EKEEEQTRKTQELYEAM 128 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 344444577776666666543 356777777888888888888877776554 36666777777777766
No 92
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=54.20 E-value=1.6e+02 Score=26.35 Aligned_cols=69 Identities=20% Similarity=0.270 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHH---HHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 045851 34 TFSFVSALQAELVQARLRIHELEDEHRSSKKKYENL---VRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQID 110 (473)
Q Consensus 34 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L---~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E 110 (473)
.-.+.-.+..+|..+...+..+..=..+++.++++. -.++.. +.+.++.-|..+|.+|+..|..|++-+
T Consensus 44 ~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~--------~i~~~k~~ie~lk~~L~~ak~~r~~k~ 115 (139)
T PF05615_consen 44 SQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQ--------EIEQAKKEIEELKEELEEAKRVRQNKE 115 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577788899999988888877777766655433 333322 345667778899999999988888766
No 93
>PRK14147 heat shock protein GrpE; Provisional
Probab=54.08 E-value=78 Score=30.30 Aligned_cols=69 Identities=19% Similarity=0.212 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 045851 36 SFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSK 115 (473)
Q Consensus 36 Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 115 (473)
.-+..|..+|...+.++.+|...-....-+++.+.|+...|+...+ ...+.+
T Consensus 18 ~~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~----------------------------~~a~~~ 69 (172)
T PRK14147 18 PETDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQAR----------------------------KFANEK 69 (172)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHH
Confidence 3355688888888888888877766777777777777766654221 234577
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045851 116 FVNELAKAESSAKQFMQ 132 (473)
Q Consensus 116 L~~ELaE~Kss~~~~lk 132 (473)
++++|..+--.|.+|+.
T Consensus 70 ~~~~lLpv~DnlerAl~ 86 (172)
T PRK14147 70 LLGELLPVFDSLDAGLT 86 (172)
T ss_pred HHHHHhhhhhHHHHHHh
Confidence 88888888777777754
No 94
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=53.37 E-value=87 Score=28.32 Aligned_cols=56 Identities=14% Similarity=0.281 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045851 82 VRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEE 137 (473)
Q Consensus 82 skE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lkelE~E 137 (473)
.++.+.+.+.+......++...+..+.+-.|-.|..+||+++|....+...+|-.-
T Consensus 6 ~~~~~~~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~aG 61 (125)
T PF03245_consen 6 KRQRDQAQAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAAG 61 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcC
Confidence 34556777778888888999999999999999999999999999888877776554
No 95
>PRK14156 heat shock protein GrpE; Provisional
Probab=53.02 E-value=73 Score=30.83 Aligned_cols=66 Identities=17% Similarity=0.271 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHH
Q 045851 39 SALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVN 118 (473)
Q Consensus 39 ~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ 118 (473)
-++..+|+..+.++.+|...-.....+++.+.|+...|+... ....+.++++
T Consensus 30 ~~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~----------------------------~~~a~~~~~~ 81 (177)
T PRK14156 30 TPEKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQL----------------------------QRYRSQDLAK 81 (177)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHH
Confidence 356667777777777776555555556666555555443311 1245678888
Q ss_pred HHHHHHHHHHHHHH
Q 045851 119 ELAKAESSAKQFMQ 132 (473)
Q Consensus 119 ELaE~Kss~~~~lk 132 (473)
+|..+--.|.+|+.
T Consensus 82 ~LLpVlDnLerAl~ 95 (177)
T PRK14156 82 AILPSLDNLERALA 95 (177)
T ss_pred HHhhHHhHHHHHHh
Confidence 88888888887764
No 96
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=52.96 E-value=80 Score=27.98 Aligned_cols=63 Identities=29% Similarity=0.399 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHH
Q 045851 44 ELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKA 123 (473)
Q Consensus 44 EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~ 123 (473)
+|...+.+..++++++.....+|+.|-..|-+|- ..+| ..+|+.|-.++.-|..|.+.|.++
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEA-----------N~MV-------a~ar~e~~~~e~k~~~le~~l~e~ 63 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEA-----------NKMV-------ADARRERAALEEKNEQLEKQLKEK 63 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH-------HHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888888888999999998887762 2222 567888888888888888777775
Q ss_pred H
Q 045851 124 E 124 (473)
Q Consensus 124 K 124 (473)
.
T Consensus 64 ~ 64 (100)
T PF06428_consen 64 E 64 (100)
T ss_dssp C
T ss_pred H
Confidence 4
No 97
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=52.26 E-value=1.4e+02 Score=33.01 Aligned_cols=83 Identities=27% Similarity=0.378 Sum_probs=50.0
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHh---hhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHH--
Q 045851 27 LLEDQVTTFSFVSALQAELVQARLRIHELEDEH---RSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSK-- 101 (473)
Q Consensus 27 leEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~---~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~-- 101 (473)
|-|.-++++|.|-|+|. ++-.|+++|- ++-...++-|.||.-+| |++|+.||+.
T Consensus 376 LAEETAATiSAIEAMKn------AhrEEmeRELeKsqSvnsdveaLRrQylee---------------lqsvqRELeVLS 434 (593)
T KOG4807|consen 376 LAEETAATISAIEAMKN------AHREEMERELEKSQSVNSDVEALRRQYLEE---------------LQSVQRELEVLS 434 (593)
T ss_pred hhhhhhhhhHHHHHHHH------HHHHHHHHHHHhhhccccChHHHHHHHHHH---------------HHHHHHHHHHHH
Confidence 55777889999988874 2333333332 35566788888888776 4566666664
Q ss_pred HHHhhhhhhHHhHHHHHHHHHHHHHHHHHHH
Q 045851 102 ERKSRKQIDFLNSKFVNELAKAESSAKQFMQ 132 (473)
Q Consensus 102 ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lk 132 (473)
|.=..|=+| |.-|+.-|.+.+-++.+|-+
T Consensus 435 EQYSQKCLE--nahLaqalEaerqaLRqCQr 463 (593)
T KOG4807|consen 435 EQYSQKCLE--NAHLAQALEAERQALRQCQR 463 (593)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 333444444 34466666666665555543
No 98
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=52.16 E-value=3.5e+02 Score=29.60 Aligned_cols=152 Identities=24% Similarity=0.356 Sum_probs=76.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhch---hhHHHHHHHHHHhHhhh------hhhhHHHHHHHHHHHHHHHHHHHH
Q 045851 34 TFSFVSALQAELVQARLRIHELEDEHRSSK---KKYENLVRKLREERNSW------YVRKHYKMEAIVDELKDELSKERK 104 (473)
Q Consensus 34 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~---~eie~L~KqlaEEK~~w------KskE~eki~a~i~slk~ELe~ERk 104 (473)
..|++.|+. -+-|--|+.|+++++..- .+=|+|.-.|.-|+..- ...|..|..-+-+-|--.|+.||+
T Consensus 105 ~~s~LaAaE---~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~ 181 (561)
T KOG1103|consen 105 AASLLAAAE---KKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKK 181 (561)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555543 244667888888887642 22234444333332211 111222333333445556777775
Q ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------------hhhHhhhhHHH
Q 045851 105 SRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEES--------------------------KTMRIREEVEE 158 (473)
Q Consensus 105 ~Rkr~E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaRellE~v--------------------------es~k~reE~ee 158 (473)
- -|.+..-|.-| -|.++ +|--|.-.||-+||=++ ...|+-+|++-
T Consensus 182 R---Heqis~mLilE---cKka~---~KaaEegqKA~ei~Lklekdksr~~k~eee~aaERerglqteaqvek~i~Efdi 252 (561)
T KOG1103|consen 182 R---HEQISLMLILE---CKKAL---LKAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDI 252 (561)
T ss_pred H---HHHHHHHHHHH---HHHHH---HHHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 3 34444445433 23333 33345566777776555 22345566777
Q ss_pred hHHHHHhhhhhhhhhhhhhHhhhhhhhhhhhHHHHHHHHHHHHHHhh
Q 045851 159 ERNMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFLMS 205 (473)
Q Consensus 159 ER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~FL~s 205 (473)
||..|+ |+.=|+|.-|--| -+-+.-|.+.+.++|+-+..
T Consensus 253 Ere~LR-Ael~ree~r~K~l-------KeEmeSLkeiVkdlEA~hQh 291 (561)
T KOG1103|consen 253 EREFLR-AELEREEKRQKML-------KEEMESLKEIVKDLEADHQH 291 (561)
T ss_pred HHHHHH-HHHHHHHHHHHHH-------HHHHHHHHHHHhhhhhhhhh
Confidence 777765 5666666555333 22233444555566665543
No 99
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=51.83 E-value=93 Score=27.58 Aligned_cols=48 Identities=23% Similarity=0.356 Sum_probs=33.7
Q ss_pred HHHHHHHHhhhhhhHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 045851 97 DELSKERKSRKQIDFLNSKFVNELAKAESSA-KQFMQYYEEEKRARQLL 144 (473)
Q Consensus 97 ~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~-~~~lkelE~ErkaRell 144 (473)
.+|..|+..|..+|....++-.||.+.-.++ ..|=+=...+|+.|..+
T Consensus 1 ~~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~ 49 (100)
T PF06428_consen 1 KELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAAL 49 (100)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999976554 44333334444444433
No 100
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=50.72 E-value=1.6e+02 Score=31.79 Aligned_cols=104 Identities=25% Similarity=0.335 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 045851 40 ALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNE 119 (473)
Q Consensus 40 aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~E 119 (473)
-|+.+|-|+|. +...-....+.+|-++.++.||.. .....+++++.| .+..|--+..|-+|
T Consensus 110 kL~nqL~~~~~----vf~k~k~~~q~LE~li~~~~EEn~--------~lqlqL~~l~~e-------~~Ekeeesq~LnrE 170 (401)
T PF06785_consen 110 KLKNQLFHVRE----VFMKTKGDIQHLEGLIRHLREENQ--------CLQLQLDALQQE-------CGEKEEESQTLNRE 170 (401)
T ss_pred HHHHHHHHHHH----HHHHhcchHHHHHHHHHHHHHHHH--------HHHHhHHHHHHH-------HhHhHHHHHHHHHH
Confidence 45566666655 334445566678888888888765 334444444433 23344456677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHhhhhHhhhhHHHhHHHHHhhh
Q 045851 120 LAKAESSAKQFMQYYEEEKRA------------RQLLEESKTMRIREEVEEERNMLQLAE 167 (473)
Q Consensus 120 LaE~Kss~~~~lkelE~Erka------------RellE~ves~k~reE~eeER~MLqmAE 167 (473)
|+|+-+-- ++|-.|-.+ ..-+-++ ..|+++=+-|=|.+||++.
T Consensus 171 LaE~layq----q~L~~eyQatf~eq~~ml~kRQ~yI~~L-EsKVqDLm~EirnLLQle~ 225 (401)
T PF06785_consen 171 LAEALAYQ----QELNDEYQATFVEQHSMLDKRQAYIGKL-ESKVQDLMYEIRNLLQLES 225 (401)
T ss_pred HHHHHHHH----HHHHHHhhcccccchhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhhh
Confidence 77764422 222222222 1111111 1245555667788888876
No 101
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=50.03 E-value=5.4 Score=46.22 Aligned_cols=93 Identities=23% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhh--hhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYV--RKHYKMEAIVDELKDELSKERKSRKQIDFLNSK 115 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKs--kE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 115 (473)
|.-|..+|+.+++.+..|++-++..-+.+..+..++.+....+-. ++.....+-|..|+.+|+.-+-..-.++.-|+.
T Consensus 358 leDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~ 437 (859)
T PF01576_consen 358 LEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQ 437 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 345667777777777777777776666666665555444332221 233445566788888888888888889999999
Q ss_pred HHHHHHHHHHHHHHH
Q 045851 116 FVNELAKAESSAKQF 130 (473)
Q Consensus 116 L~~ELaE~Kss~~~~ 130 (473)
|..||.++...+..+
T Consensus 438 L~~El~dl~~q~~~~ 452 (859)
T PF01576_consen 438 LQDELEDLTSQLDDA 452 (859)
T ss_dssp ---------------
T ss_pred HHHhhccchhhhhhh
Confidence 999999988776554
No 102
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=49.57 E-value=3.4e+02 Score=28.70 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHH
Q 045851 37 FVSALQAELVQARLRIHELEDEHRSSKKKYENLV 70 (473)
Q Consensus 37 lv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~ 70 (473)
++-.++.+|.+|+.||+|+++-.+..+.++...+
T Consensus 180 ~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~ 213 (305)
T PF14915_consen 180 ALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYI 213 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4677888899999999999888887776666444
No 103
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=49.03 E-value=2.5e+02 Score=31.21 Aligned_cols=10 Identities=20% Similarity=0.195 Sum_probs=5.4
Q ss_pred HHHHHHHhhh
Q 045851 197 EELENFLMSN 206 (473)
Q Consensus 197 ~elE~FL~sk 206 (473)
.+=|.||..-
T Consensus 324 mdeery~Ne~ 333 (552)
T KOG2129|consen 324 MDEERYLNEF 333 (552)
T ss_pred HHHHHHHhhh
Confidence 3446666553
No 104
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=48.90 E-value=4.8e+02 Score=30.18 Aligned_cols=114 Identities=26% Similarity=0.259 Sum_probs=66.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 045851 33 TTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFL 112 (473)
Q Consensus 33 s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~l 112 (473)
.-.+.|..+-.||+.|+.+|..|++|.- +|.-|++.....-+...-+-|.+... -|.. .+++
T Consensus 232 ~k~aev~lim~eLe~aq~ri~~lE~e~e-------~L~~ql~~~N~~~~~~~~~~i~~~~~----~L~~-------kd~~ 293 (629)
T KOG0963|consen 232 AKAAEVSLIMTELEDAQQRIVFLEREVE-------QLREQLAKANSSKKLAKIDDIDALGS----VLNQ-------KDSE 293 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhhhhccCCchHHHHH----HHhH-------HHHH
Confidence 3457788888999999999999988755 44444544433322221122222222 2222 6677
Q ss_pred hHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-HHHHHHh----hhhHhhhhHHHhHHHHH
Q 045851 113 NSKFVNELAKAESSAKQ-------FMQYYEEEKRA-RQLLEES----KTMRIREEVEEERNMLQ 164 (473)
Q Consensus 113 n~KL~~ELaE~Kss~~~-------~lkelE~Erka-RellE~v----es~k~reE~eeER~MLq 164 (473)
|.+|..++.-.++|+.. .+..||++=++ +..+|+| .+..--+|+..|-.+|+
T Consensus 294 i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 294 IAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Confidence 77777777666666543 34455555443 3445555 33334456667777776
No 105
>PRK14151 heat shock protein GrpE; Provisional
Probab=48.89 E-value=2.6e+02 Score=27.00 Aligned_cols=67 Identities=12% Similarity=0.073 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHH
Q 045851 34 TFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELS 100 (473)
Q Consensus 34 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe 100 (473)
..+.+..|+.++...+.++.+|...-.....+++.+.|+...|+...+.--.+++-..+-.+-+-|+
T Consensus 18 ~~~~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~Dnle 84 (176)
T PRK14151 18 EAAAGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLE 84 (176)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 3455778888888888888888777777777888888888777765554444444444444444443
No 106
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=47.87 E-value=2.7e+02 Score=26.99 Aligned_cols=31 Identities=16% Similarity=0.492 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhHHHHHH
Q 045851 41 LQAELVQARLRIHELEDEHRSSKKKYENLVR 71 (473)
Q Consensus 41 Lk~EL~~Ar~rI~eL~~E~~s~~~eie~L~K 71 (473)
+..-|..-+..|.++..++...+.+|+.++.
T Consensus 18 ~~~~L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 18 VNNRLLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666666666666666666655
No 107
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=47.87 E-value=1.5e+02 Score=26.81 Aligned_cols=93 Identities=17% Similarity=0.201 Sum_probs=59.2
Q ss_pred cchHHHHHhhhccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHH
Q 045851 13 KTAREAYCLYNHVK-LLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAI 91 (473)
Q Consensus 13 kTs~ellkvlnriw-leEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~ 91 (473)
+-|++|..+=--.. |.||+-+. +--|+.++-.+-.+|-+|+.... +....
T Consensus 7 qISKeLVDLQIe~~rL~Eq~EaE---~FELk~~vL~lE~rvleLel~~~--------------------------~~~~~ 57 (108)
T PF14739_consen 7 QISKELVDLQIETNRLREQHEAE---KFELKNEVLRLENRVLELELHGD--------------------------KAAPQ 57 (108)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhcc--------------------------hhhHH
Confidence 34555543322222 66776554 67888888888888888865543 11222
Q ss_pred HHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045851 92 VDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRAR 141 (473)
Q Consensus 92 i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaR 141 (473)
+.++.+.+. -++....+|+.|+.-.+..+...-++++.|....
T Consensus 58 ~~~~~~~~~-------~~~~~~~~l~~e~~~l~~~~~a~~k~~~~e~~k~ 100 (108)
T PF14739_consen 58 IADLRHRLA-------EAQEDRQELQEEYVSLKKNYQALPKAFEAEVAKN 100 (108)
T ss_pred HhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 223222222 3445677899999999999999999998887654
No 108
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=47.78 E-value=2.9e+02 Score=28.70 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHH
Q 045851 36 SFVSALQAELVQARL 50 (473)
Q Consensus 36 Slv~aLk~EL~~Ar~ 50 (473)
.|+..|+.+++.++.
T Consensus 9 ~l~~~l~~~~~~~~~ 23 (314)
T PF04111_consen 9 LLLEQLDKQLEQAEK 23 (314)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566665555543
No 109
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=47.76 E-value=2.2e+02 Score=25.93 Aligned_cols=64 Identities=20% Similarity=0.370 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSR 106 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~R 106 (473)
+.+|..+|...-..+.+|.+++. .+...+..|.....+.-.+-- -+.+-|.++...|+.|+-.+
T Consensus 18 La~Le~slE~~K~S~~eL~kqkd----~L~~~l~~L~~q~~s~~qr~~-eLqaki~ea~~~le~eK~ak 81 (107)
T PF09304_consen 18 LASLERSLEDEKTSQGELAKQKD----QLRNALQSLQAQNASRNQRIA-ELQAKIDEARRNLEDEKQAK 81 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888855544 355555666555554433322 25555666666666654443
No 110
>PRK09039 hypothetical protein; Validated
Probab=47.66 E-value=2.9e+02 Score=28.98 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh-------hchhhHHHHHHHHHHhHhhh
Q 045851 36 SFVSALQAELVQARLRIHELEDEHR-------SSKKKYENLVRKLREERNSW 80 (473)
Q Consensus 36 Slv~aLk~EL~~Ar~rI~eL~~E~~-------s~~~eie~L~KqlaEEK~~w 80 (473)
.-|..|+..|..|+++-.+|+.-.. .....+..|-..|+++|...
T Consensus 81 ~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~ 132 (343)
T PRK09039 81 DSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVS 132 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 4577788888877777777766322 22334445556666665533
No 111
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=47.31 E-value=3.6e+02 Score=28.33 Aligned_cols=62 Identities=23% Similarity=0.371 Sum_probs=33.1
Q ss_pred hchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHH-----------HHHHHHHHHhhhhhhHHhHHHHHHHHH
Q 045851 61 SSKKKYENLVRKLREERNSWYVRKHYKMEAIVDEL-----------KDELSKERKSRKQIDFLNSKFVNELAK 122 (473)
Q Consensus 61 s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~sl-----------k~ELe~ERk~Rkr~E~ln~KL~~ELaE 122 (473)
....++.+|++++.+.|..--.--.--+++-+++| ..+|+.+|+.|.+.-.+-+-+-.|-++
T Consensus 20 ~~~~e~~~l~~~f~elkeq~yk~kLa~Lq~~Leel~~g~~~eYl~~~~~L~~~~kerl~~aely~e~~~e~v~ 92 (291)
T KOG4466|consen 20 NEESEMSNLEKQFSELKEQMYKDKLAQLQAQLEELGQGTAPEYLKRVKKLDESRKERLRVAELYREYCVERVE 92 (291)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457778888888776633221112222333332 346777777776666555555444443
No 112
>PRK03918 chromosome segregation protein; Provisional
Probab=47.10 E-value=4.9e+02 Score=29.73 Aligned_cols=9 Identities=0% Similarity=0.239 Sum_probs=3.3
Q ss_pred hhhHHHHHH
Q 045851 63 KKKYENLVR 71 (473)
Q Consensus 63 ~~eie~L~K 71 (473)
+.+++.+.+
T Consensus 625 ~~~l~~~~~ 633 (880)
T PRK03918 625 EEELDKAFE 633 (880)
T ss_pred HHHHHHHHH
Confidence 333333333
No 113
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=46.86 E-value=1.7e+02 Score=24.37 Aligned_cols=66 Identities=23% Similarity=0.349 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHH
Q 045851 49 RLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAK 128 (473)
Q Consensus 49 r~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~ 128 (473)
|.+|+++.......-+++..++++|..- ...+-.-+..-....||.+++..+-..|.
T Consensus 32 R~~i~~~~~~~~~l~k~~~~~l~~l~~~-----------------------~~~~~~~~~~k~~~~KL~~df~~~l~~fq 88 (102)
T PF14523_consen 32 REKIHQLIQKTNQLIKEISELLKKLNSL-----------------------SSDRSNDRQQKLQREKLSRDFKEALQEFQ 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS-----------------------H----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------hhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666555555555555555555332 22333444455667799999999888888
Q ss_pred HHHHHHHHH
Q 045851 129 QFMQYYEEE 137 (473)
Q Consensus 129 ~~lkelE~E 137 (473)
++.+.|..=
T Consensus 89 ~~q~~~~~~ 97 (102)
T PF14523_consen 89 KAQRRYAEK 97 (102)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776543
No 114
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=46.63 E-value=69 Score=29.12 Aligned_cols=62 Identities=21% Similarity=0.245 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHH
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDEL 99 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~EL 99 (473)
+..|+.+|...+.++.+|...-.....+++.+.+.+..++...+......+-..+-.+.+-|
T Consensus 13 ~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l 74 (165)
T PF01025_consen 13 IEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNL 74 (165)
T ss_dssp HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666777777766666666777777777777766555555444444444444433
No 115
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=46.46 E-value=4.5e+02 Score=29.18 Aligned_cols=78 Identities=27% Similarity=0.240 Sum_probs=39.5
Q ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhHHHhHHHHHhhhhhhhhhhhhhHhhhhhhhh
Q 045851 107 KQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEERNMLQLAEIWREERVQMKLVDAKLALE 186 (473)
Q Consensus 107 kr~E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaRellE~ves~k~reE~eeER~MLqmAEvWREERVQMKL~eAk~~le 186 (473)
...-.+|..++++-+.++.-..+.+. +|.+ +.|-+.|..+....+ ++.+-.|+-+-|.-|+=|.|-.|+.|..++.
T Consensus 62 ~e~~~l~e~~v~~~a~~~~~t~~~~~-~en~-~~r~~~eir~~~~q~--~e~~n~~~~l~~~~~~~r~~e~la~~~~~l~ 137 (459)
T KOG0288|consen 62 EENTQLNEERVREEATEKTLTVDVLI-AENL-RIRSLNEIRELREQK--AEFENAELALREMRRKMRIAERLAEALKDLG 137 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHhh--hhhccchhhHHHHHHHHHHHHHHHHHhhhcc
Confidence 33344555566555555554443222 1211 123333222222222 5666677777776677777777777666555
Q ss_pred hh
Q 045851 187 HK 188 (473)
Q Consensus 187 eK 188 (473)
-|
T Consensus 138 ~~ 139 (459)
T KOG0288|consen 138 LK 139 (459)
T ss_pred hh
Confidence 44
No 116
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=45.85 E-value=2.4e+02 Score=25.80 Aligned_cols=25 Identities=48% Similarity=0.461 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 045851 34 TFSFVSALQAELVQARLRIHELEDE 58 (473)
Q Consensus 34 ~~Slv~aLk~EL~~Ar~rI~eL~~E 58 (473)
|-..|-||--||++++.+|.+|.++
T Consensus 65 nP~tvLALLDElE~~~~~i~~~~~~ 89 (139)
T PF13935_consen 65 NPATVLALLDELERAQQRIAELEQE 89 (139)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566889999999999999999877
No 117
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=45.62 E-value=2.5e+02 Score=26.03 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHh
Q 045851 41 LQAELVQARLRIHELEDEHRSSKKKYENLVRKLREE 76 (473)
Q Consensus 41 Lk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEE 76 (473)
+..|+.-++.++.+|.+|-......+..+...+..-
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~ 114 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKL 114 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666555554444444444444433
No 118
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=45.40 E-value=4.7e+02 Score=29.08 Aligned_cols=59 Identities=22% Similarity=0.308 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045851 82 VRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRA 140 (473)
Q Consensus 82 skE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lkelE~Erka 140 (473)
...-+.|...|+.|-+-|+.|-..++.++....++..-|..++.....+..+++.=+..
T Consensus 281 ~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 281 EEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34446788888888899999999999998888888888888888777777776665544
No 119
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=45.14 E-value=2.8e+02 Score=26.39 Aligned_cols=82 Identities=20% Similarity=0.285 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHH
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFV 117 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 117 (473)
+..|+.++..-..+|.+|..+....+.++..|--.|.+ |.+-.+.+..-+.++.-++..=-.-.++++.-|..|+
T Consensus 104 l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~e-----k~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 104 LQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKE-----KNKANEILQDELQALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566667777777777777777777666666555533 3445556666666666666554445556666677776
Q ss_pred HHHHHHH
Q 045851 118 NELAKAE 124 (473)
Q Consensus 118 ~ELaE~K 124 (473)
.-+-..|
T Consensus 179 ~Rwm~~k 185 (194)
T PF08614_consen 179 ERWMQRK 185 (194)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554433
No 120
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.41 E-value=5e+02 Score=31.25 Aligned_cols=83 Identities=22% Similarity=0.300 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH-----HhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh-
Q 045851 34 TFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLR-----EERNSWYVRKHYKMEAIVDELKDELSKERKSRK- 107 (473)
Q Consensus 34 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~Kqla-----EEK~~wKskE~eki~a~i~slk~ELe~ERk~Rk- 107 (473)
.||-|+-|+++|..-+.-...|..|++-..+.+...--... -.-+-......+-|+.+|.+--+||+.|.....
T Consensus 484 ~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~ 563 (1118)
T KOG1029|consen 484 MISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLN 563 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555544433322111000 111222344567788888888888888865443
Q ss_pred hhhHHhHHH
Q 045851 108 QIDFLNSKF 116 (473)
Q Consensus 108 r~E~ln~KL 116 (473)
.++++|--|
T Consensus 564 eidi~n~ql 572 (1118)
T KOG1029|consen 564 EIDIFNNQL 572 (1118)
T ss_pred hhhhHHHHH
Confidence 455555443
No 121
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=44.13 E-value=3.6e+02 Score=27.43 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhH
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKY 66 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~ei 66 (473)
+.++++|+..++..+-.++.+....+.++
T Consensus 33 l~k~~~e~e~~~~~~~~~~~e~e~le~qv 61 (239)
T COG1579 33 LKKAKAELEALNKALEALEIELEDLENQV 61 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666555554444443
No 122
>PRK14162 heat shock protein GrpE; Provisional
Probab=43.92 E-value=3.3e+02 Score=26.82 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHH
Q 045851 37 FVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDEL 99 (473)
Q Consensus 37 lv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~EL 99 (473)
-+..|+.+|...+.++.+|...-.....+++.+.|+...|+...+.--.+++-..+-.+-+-|
T Consensus 40 e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnL 102 (194)
T PRK14162 40 PVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNL 102 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 367888899999999999887777777888888888877766555444444444444444443
No 123
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.25 E-value=4e+02 Score=27.63 Aligned_cols=133 Identities=23% Similarity=0.375 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHH
Q 045851 45 LVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAE 124 (473)
Q Consensus 45 L~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~K 124 (473)
+..+...|.++..+++-...+|+.|..++. .+..-+++++++.+... .-=.+|-.++.+.+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~------------~~~~k~~~~~~~i~~~~-------~eik~l~~eI~~~~ 93 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIE------------EIQSKIDELQKEIDQSK-------AEIKKLQKEIAELK 93 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 777888888888888888888888888883 23444444444443222 11223334444444
Q ss_pred HHHHHHHHHHHHHHHHHHH---------HHHh-----------hhhHhhhhHHHhHHHHH--hhhhhhhhhhhhhHhhhh
Q 045851 125 SSAKQFMQYYEEEKRARQL---------LEES-----------KTMRIREEVEEERNMLQ--LAEIWREERVQMKLVDAK 182 (473)
Q Consensus 125 ss~~~~lkelE~ErkaRel---------lE~v-----------es~k~reE~eeER~MLq--mAEvWREERVQMKL~eAk 182 (473)
..+..--.-|+ .++|-+ |+=| ..--|..-++-|+.||. ..+ |-+|.+.+
T Consensus 94 ~~I~~r~~~l~--~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~d-------k~~Le~kq 164 (265)
T COG3883 94 ENIVERQELLK--KRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKED-------KKSLEEKQ 164 (265)
T ss_pred HHHHHHHHHHH--HHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHH
Confidence 43332111111 223333 2222 11124445677887773 333 56789999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhh
Q 045851 183 LALEHKYSQINKLVEELENFLMS 205 (473)
Q Consensus 183 ~~leeK~s~ldkL~~elE~FL~s 205 (473)
..+++++..|..|..|+|+-+..
T Consensus 165 ~~l~~~~e~l~al~~e~e~~~~~ 187 (265)
T COG3883 165 AALEDKLETLVALQNELETQLNS 187 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998876
No 124
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=43.04 E-value=3.1e+02 Score=30.66 Aligned_cols=58 Identities=26% Similarity=0.319 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKER 103 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ER 103 (473)
|..|-.++.+-|.++..|+++.+..+++-+.|.++- ..-..+|..+|+..+.+|..|+
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~--------~~id~~i~~av~~~~~~~~~~~ 118 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKRE--------QSIDQQIQQAVQSETQELTKEI 118 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHhhhHHHHHHH
Confidence 566666777777777777777777766666654432 2234667777777777776654
No 125
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=42.92 E-value=2.7e+02 Score=31.53 Aligned_cols=88 Identities=20% Similarity=0.348 Sum_probs=66.6
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHhhhhHH-----HhHHHHHhhhhhhhhhhhhhHhhhh
Q 045851 109 IDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEES-KTMRIREEVE-----EERNMLQLAEIWREERVQMKLVDAK 182 (473)
Q Consensus 109 ~E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaRellE~v-es~k~reE~e-----eER~MLqmAEvWREERVQMKL~eAk 182 (473)
++.+=.+|.+||+.++.+.-+++ ++.+.+...|++.+ ++..-.++++ -+..+.+|.+ +|..++.+
T Consensus 3 ad~~~~~L~~eL~~le~~ni~~l--~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~-------di~~IE~q 73 (701)
T PF09763_consen 3 ADAFEERLSKELSALEAANIHSL--LESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRD-------DIEYIESQ 73 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhh
Confidence 56778899999999999998887 46777788888888 5555555554 4556666665 78888888
Q ss_pred h-hhhhhhHHHHHHHHHHHHHHhh
Q 045851 183 L-ALEHKYSQINKLVEELENFLMS 205 (473)
Q Consensus 183 ~-~leeK~s~ldkL~~elE~FL~s 205 (473)
. +|+=+.+=-..|..+|+.+|.+
T Consensus 74 n~~Lqvq~~N~k~L~~eL~~Ll~~ 97 (701)
T PF09763_consen 74 NNGLQVQSANQKLLLNELENLLDT 97 (701)
T ss_pred cCchhhHHHHHHHHHHHHHHHHHh
Confidence 7 5555666677899999999887
No 126
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=42.90 E-value=7.3e+02 Score=30.59 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc---hhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHH-------HHHHHHhhh
Q 045851 38 VSALQAELVQARLRIHELEDEHRSS---KKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDE-------LSKERKSRK 107 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~---~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~E-------Le~ERk~Rk 107 (473)
+.+.+.||++.-.+|+.|+.-.+.. +.+++-.+..++=-+.-...-++-++-+.++.+.++ +...++.-+
T Consensus 686 ~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k 765 (1174)
T KOG0933|consen 686 LRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALK 765 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788888888888887766554 345665555555444444444555565655555554 455566666
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045851 108 QIDFLNSKFVNELAKAESSAKQFMQYYEEEK 138 (473)
Q Consensus 108 r~E~ln~KL~~ELaE~Kss~~~~lkelE~Er 138 (473)
..+.--..|-+-+.+.+..-.+=++|+++|=
T Consensus 766 ~~~~~i~~lE~~~~d~~~~re~rlkdl~kei 796 (1174)
T KOG0933|consen 766 KCEDKISTLEKKMKDAKANRERRLKDLEKEI 796 (1174)
T ss_pred HHHHHHHHHHHHHhHhhhhhHhHHHHHHHHH
Confidence 6666666666666666666666666666553
No 127
>PRK11637 AmiB activator; Provisional
Probab=42.78 E-value=4.4e+02 Score=27.97 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHH
Q 045851 39 SALQAELVQARLRIHELEDEHRSSKKKYENLVRKL 73 (473)
Q Consensus 39 ~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~Kql 73 (473)
..++.+|+..+.+|+++.++....++++..+.+++
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l 77 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQL 77 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666665555444444444443
No 128
>PRK14148 heat shock protein GrpE; Provisional
Probab=42.22 E-value=1.9e+02 Score=28.46 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHH
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFV 117 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 117 (473)
+.+|+.+|...+..+.+|...-....-+++.+.|+...|+. . -....+.+++
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e--------------------------~--~~~~a~~~~~ 93 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVS--------------------------N--ARKFGIEKFA 93 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------H--HHHHHHHHHH
Confidence 44555555555555555544444444444444444433332 1 1234567888
Q ss_pred HHHHHHHHHHHHHHH
Q 045851 118 NELAKAESSAKQFMQ 132 (473)
Q Consensus 118 ~ELaE~Kss~~~~lk 132 (473)
++|..+--.|.+|+.
T Consensus 94 ~~LLpV~DnlerAl~ 108 (195)
T PRK14148 94 KELLPVIDSIEQALK 108 (195)
T ss_pred HHHhhHHhHHHHHHh
Confidence 888888888877765
No 129
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=42.07 E-value=5.5e+02 Score=28.89 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=22.8
Q ss_pred HHHHHHHH-HHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 045851 39 SALQAELV-QARLRIHELEDEHRSSKKKYENLVRKLR 74 (473)
Q Consensus 39 ~aLk~EL~-~Ar~rI~eL~~E~~s~~~eie~L~Kqla 74 (473)
..+-..+. ..+.++.+|..+......+++.+-++|+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 379 EVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKIS 415 (650)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444 4566777777777777777777777774
No 130
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=42.01 E-value=2.3e+02 Score=24.45 Aligned_cols=69 Identities=22% Similarity=0.224 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045851 64 KKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEE 137 (473)
Q Consensus 64 ~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lkelE~E 137 (473)
.-++..+-++.-|+ +|+..+..++-.+ ++-|..|.+.=+..-.=|+.+...|.++...|.+.++++|+|
T Consensus 27 ~~lE~k~~rl~~Ek----~kadqkyfa~mr~-~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~~~~~l~~~Eke 95 (96)
T PF08647_consen 27 TILEQKKLRLEAEK----AKADQKYFAAMRS-KDALDNEMKKLNTQLSKSSELIEQLKETEKEFVRKLKNLEKE 95 (96)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444455555553 3455555555544 345777765555566668888999999999999999998876
No 131
>PRK14153 heat shock protein GrpE; Provisional
Probab=41.53 E-value=3.6e+02 Score=26.58 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWY 81 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wK 81 (473)
+.++..+++..+.++.+|...-.....+++.+.|....|+...+
T Consensus 35 ~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~ 78 (194)
T PRK14153 35 DSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENR 78 (194)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777766666666677777777766654333
No 132
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=41.02 E-value=2e+02 Score=28.41 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=28.1
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045851 108 QIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQ 142 (473)
Q Consensus 108 r~E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaRe 142 (473)
+--..++|+..-|+.+...-.+.+.+||.||+...
T Consensus 92 ~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~ 126 (192)
T PF09727_consen 92 HQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHA 126 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446778888899999999999999999887763
No 133
>PRK02224 chromosome segregation protein; Provisional
Probab=40.58 E-value=6.2e+02 Score=29.08 Aligned_cols=29 Identities=10% Similarity=0.249 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhh
Q 045851 37 FVSALQAELVQARLRIHELEDEHRSSKKK 65 (473)
Q Consensus 37 lv~aLk~EL~~Ar~rI~eL~~E~~s~~~e 65 (473)
++.-+...+......+.+|+.+....+.+
T Consensus 469 ~~~~~~~~~~~~~~~~~~le~~l~~~~~~ 497 (880)
T PRK02224 469 TIEEDRERVEELEAELEDLEEEVEEVEER 497 (880)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433333
No 134
>PRK14155 heat shock protein GrpE; Provisional
Probab=40.45 E-value=1.6e+02 Score=29.11 Aligned_cols=67 Identities=18% Similarity=0.197 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHH
Q 045851 39 SALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVN 118 (473)
Q Consensus 39 ~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ 118 (473)
..|..+|...+.++.+|........-+++.+.|+...|+.. -......++++
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~----------------------------~~~~a~~~~~~ 67 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMND----------------------------ARAYAIQKFAR 67 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHH
Confidence 55667777777777777666555666666666666554431 12345678888
Q ss_pred HHHHHHHHHHHHHHH
Q 045851 119 ELAKAESSAKQFMQY 133 (473)
Q Consensus 119 ELaE~Kss~~~~lke 133 (473)
+|..+--.|.+|+.-
T Consensus 68 ~LLpV~DnLerAl~~ 82 (208)
T PRK14155 68 DLLGAADNLGRATAA 82 (208)
T ss_pred HHhhHHhhHHHHHhc
Confidence 999988888888663
No 135
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=39.89 E-value=2.6e+02 Score=27.00 Aligned_cols=71 Identities=30% Similarity=0.460 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhh----hhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhH
Q 045851 43 AELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYV----RKHYKMEAIVDELKDELSKERKSRKQIDFLNS 114 (473)
Q Consensus 43 ~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKs----kE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~ 114 (473)
.||++.|.+|++.+.+-..+- .+..|+++|...|-+.++ .=..-|-++=..|+..|....-....+...|.
T Consensus 72 ~eLq~tr~~I~eFi~~~K~Np-nY~~li~~Lt~~kd~k~sVt~SSNKSdI~aAN~~L~qAL~~Ak~~K~~~~~~~k 146 (157)
T PF04778_consen 72 NELQQTRKQIDEFINKNKNNP-NYAELIKKLTQKKDSKNSVTESSNKSDIEAANQELKQALNKAKTHKEQADNQNK 146 (157)
T ss_pred HHHHHHHHHHHHHHhhccCCc-cHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 689999999999999984444 688899999887765543 12233444444444444443333333333333
No 136
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=39.48 E-value=2.2e+02 Score=23.60 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=51.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHh
Q 045851 34 TFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLN 113 (473)
Q Consensus 34 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln 113 (473)
+-+++..|.-.|+....+|++|.+-|......|+.+-..|.+-.. -+.+.+.+.-.. =...=...|+++..+|
T Consensus 5 a~Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~------~~~~~~~~~~~~-y~~KL~~ikkrm~~l~ 77 (92)
T PF14712_consen 5 AEGLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNE------VEQINEPFDLDP-YVKKLVNIKKRMSNLH 77 (92)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhhhhHHHhhH-HHHHHHHHHHHHHHHH
Confidence 446788899999999999999998888888888877777755433 122222221111 1222235788888888
Q ss_pred HHHH
Q 045851 114 SKFV 117 (473)
Q Consensus 114 ~KL~ 117 (473)
.++.
T Consensus 78 ~~l~ 81 (92)
T PF14712_consen 78 ERLQ 81 (92)
T ss_pred HHHH
Confidence 8874
No 137
>PRK02224 chromosome segregation protein; Provisional
Probab=39.01 E-value=6.5e+02 Score=28.90 Aligned_cols=6 Identities=17% Similarity=0.135 Sum_probs=2.1
Q ss_pred HHHHHH
Q 045851 50 LRIHEL 55 (473)
Q Consensus 50 ~rI~eL 55 (473)
.++.++
T Consensus 220 ~~i~~~ 225 (880)
T PRK02224 220 EEIERY 225 (880)
T ss_pred HHHHHH
Confidence 333333
No 138
>PRK04863 mukB cell division protein MukB; Provisional
Probab=38.63 E-value=9.3e+02 Score=30.59 Aligned_cols=13 Identities=15% Similarity=0.123 Sum_probs=6.2
Q ss_pred HHHHHHhhhhhHh
Q 045851 455 KHLKAMMENQKTH 467 (473)
Q Consensus 455 KlleArmesqKvQ 467 (473)
++=.+.-+.||.|
T Consensus 801 ~~~~~~~~~~~~~ 813 (1486)
T PRK04863 801 RYATLSFDVQKLQ 813 (1486)
T ss_pred HHHHHhhhHHHHH
Confidence 3334445555554
No 139
>PRK14161 heat shock protein GrpE; Provisional
Probab=38.08 E-value=2.3e+02 Score=27.42 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=17.5
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHH
Q 045851 110 DFLNSKFVNELAKAESSAKQFMQ 132 (473)
Q Consensus 110 E~ln~KL~~ELaE~Kss~~~~lk 132 (473)
.....+++++|..+--.|.+|+.
T Consensus 65 ~~a~~~~~~~LLpv~DnlerAl~ 87 (178)
T PRK14161 65 DYAIATFAKELLNVSDNLSRALA 87 (178)
T ss_pred HHHHHHHHHHHhhHHhHHHHHHh
Confidence 34567888888888888877765
No 140
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=37.84 E-value=4.7e+02 Score=26.94 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 045851 87 KMEAIVDELKDELS 100 (473)
Q Consensus 87 ki~a~i~slk~ELe 100 (473)
.+++.|.++..+|+
T Consensus 213 ~lr~eL~~~~~~i~ 226 (325)
T PF08317_consen 213 ALRQELAEQKEEIE 226 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444443
No 141
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=37.72 E-value=5.9e+02 Score=27.99 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=12.5
Q ss_pred HhhhhhhHHhHHHHHHHHHHHHH
Q 045851 104 KSRKQIDFLNSKFVNELAKAESS 126 (473)
Q Consensus 104 k~Rkr~E~ln~KL~~ELaE~Kss 126 (473)
.++++.+.+..+|.++|...+.-
T Consensus 334 eL~~~~~~~~~~l~~~l~~~~~e 356 (582)
T PF09731_consen 334 ELKRQEEAHEEHLKNELREQAIE 356 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666554443
No 142
>PRK10884 SH3 domain-containing protein; Provisional
Probab=37.20 E-value=4.2e+02 Score=26.14 Aligned_cols=27 Identities=7% Similarity=0.175 Sum_probs=18.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHH
Q 045851 32 VTTFSFVSALQAELVQARLRIHELEDE 58 (473)
Q Consensus 32 ~s~~Slv~aLk~EL~~Ar~rI~eL~~E 58 (473)
++....+..|+.||..++++..++..+
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344456777777777777777776544
No 143
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=36.89 E-value=3.1e+02 Score=24.57 Aligned_cols=82 Identities=23% Similarity=0.297 Sum_probs=56.9
Q ss_pred HHHhhhccc---ccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHH
Q 045851 18 AYCLYNHVK---LLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDE 94 (473)
Q Consensus 18 llkvlnriw---leEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~s 94 (473)
+--+.|||. ---.+.++-+-|..|-.-|---..++=.++++..-.+-..+.|-.+|+.=|. .+++++.
T Consensus 11 v~if~nRmksns~RGrsIanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~E~lQdkL~qi~e---------AR~AlDa 81 (96)
T PF12210_consen 11 VEIFVNRMKSNSSRGRSIANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYYEGLQDKLAQIKE---------ARAALDA 81 (96)
T ss_dssp HHHHHHHHHHHHHTT--GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHhHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
Confidence 344567776 1234556778888888888888888888888888888888888888876554 6788999
Q ss_pred HHHHHHHHHHhhhhhh
Q 045851 95 LKDELSKERKSRKQID 110 (473)
Q Consensus 95 lk~ELe~ERk~Rkr~E 110 (473)
|++| ..+|+|+..|
T Consensus 82 lR~e--H~~klrr~aE 95 (96)
T PF12210_consen 82 LREE--HREKLRRQAE 95 (96)
T ss_dssp HHHH--HHHHHHHHH-
T ss_pred HHHH--HHHHHHHHhc
Confidence 9986 4455665544
No 144
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=36.32 E-value=41 Score=31.21 Aligned_cols=40 Identities=28% Similarity=0.292 Sum_probs=20.7
Q ss_pred cccCCCCCcchHHH----HHhhhccc--ccccccchhhHHHHHHHH
Q 045851 5 TKWDPGCSKTAREA----YCLYNHVK--LLEDQVTTFSFVSALQAE 44 (473)
Q Consensus 5 TKWd~~~lkTs~el----lkvlnriw--leEq~~s~~Slv~aLk~E 44 (473)
+-|||..+...+.+ |+-|+.++ +...+....+.+..|.++
T Consensus 36 ~PyDpd~I~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~ 81 (131)
T PF04859_consen 36 SPYDPDKIQAADEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAE 81 (131)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccccc
Confidence 45777777776665 34555555 334333333334444443
No 145
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=36.27 E-value=1.2e+02 Score=23.93 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHH
Q 045851 36 SFVSALQAELVQARLRIHELEDEHRSSKKKYENL 69 (473)
Q Consensus 36 Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L 69 (473)
.-+..++.++...+.+|.+|.++....+.+++.|
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3356677777777777777777777776666666
No 146
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=36.24 E-value=1.3e+02 Score=33.57 Aligned_cols=54 Identities=22% Similarity=0.276 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHH
Q 045851 42 QAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFV 117 (473)
Q Consensus 42 k~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 117 (473)
++-|+.-|+||.||..=-...++ +- .| -|.-|+.+|+.|+++|-++|.--.||.
T Consensus 568 k~s~delr~qi~el~~ive~lk~-------~~--------~k-------el~kl~~dleeek~mr~~lemei~~lk 621 (627)
T KOG4348|consen 568 KNSLDELRAQIIELLCIVEALKK-------DH--------GK-------ELEKLRKDLEEEKTMRSNLEMEIEKLK 621 (627)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH-------HH--------HH-------HHHHHHHHHHHHHHHHhhhHhhHHHHH
Confidence 56677889999998654333222 11 11 133345667777777776665444443
No 147
>PF09636 XkdW: XkdW protein; InterPro: IPR019094 This entry includes the phage SPbeta protein YorD, the function of which is not known, It also contains the protein XkdW (P54342 from SWISSPROT) from the Phage-like element PBSX in Bacillus subtilis. XkdW is approximately 100 residues long and contains two alpha helices and two beta strands, and is probably monomeric. XkdW is expressed in bacteria but is probably viral in origin. Its function is unknown. PBSX, a defective prophage of B. subtilis, is a chromosomally based element which encodes a non-infectious phage-like particle with bactericidal activity. PBSX is induced by agents which elicit the SOS response [].; PDB: 2HG7_A.
Probab=36.06 E-value=12 Score=33.83 Aligned_cols=38 Identities=32% Similarity=0.372 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHH
Q 045851 91 IVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAK 128 (473)
Q Consensus 91 ~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~ 128 (473)
.++.+-.+|..|+=.|+++|.++.-|++||+.+|..+-
T Consensus 66 qle~L~qeLaqekl~rkqle~~~~~Lg~ela~~kLe~l 103 (108)
T PF09636_consen 66 QLELLGQELAQEKLARKQLEELINNLGNELANLKLELL 103 (108)
T ss_dssp --------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788999999999999999999999999987654
No 148
>PRK11637 AmiB activator; Provisional
Probab=36.04 E-value=5.6e+02 Score=27.21 Aligned_cols=36 Identities=6% Similarity=0.186 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHH
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKL 73 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~Kql 73 (473)
+..++.++...+..|.++..+......+++.+.++|
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi 84 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAI 84 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555544444
No 149
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=35.97 E-value=4.2e+02 Score=30.62 Aligned_cols=104 Identities=18% Similarity=0.156 Sum_probs=66.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH-HhHhhhhhhhH----HHHHHHHHHHHHHHHHHHHhhhh
Q 045851 34 TFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLR-EERNSWYVRKH----YKMEAIVDELKDELSKERKSRKQ 108 (473)
Q Consensus 34 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~Kqla-EEK~~wKskE~----eki~a~i~slk~ELe~ERk~Rkr 108 (473)
-++-+..|..+|.+.++.+.++..+....+.+.+.|-+++. -.....+.+.- .-++.-|+.++.+|...++.=+.
T Consensus 180 ~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~ 259 (670)
T KOG0239|consen 180 LESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKE 259 (670)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888888888888887776666666666544 01111112211 12222267777788877777777
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045851 109 IDFLNSKFVNELAKAESSAKQFMQYYEEE 137 (473)
Q Consensus 109 ~E~ln~KL~~ELaE~Kss~~~~lkelE~E 137 (473)
+.....++.+++.+.........++|+..
T Consensus 260 l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 288 (670)
T KOG0239|consen 260 LNDQVSLLTREVQEALKESNTLQSDLESL 288 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766665555554443
No 150
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=35.92 E-value=4.5e+02 Score=26.12 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045851 115 KFVNELAKAESSAKQFMQYYEEEKRARQLLEES 147 (473)
Q Consensus 115 KL~~ELaE~Kss~~~~lkelE~ErkaRellE~v 147 (473)
-+..+|..+..||+.+.+-||+ .+++++..
T Consensus 80 q~~~dL~s~E~sfsdl~~ryek---~K~vi~~~ 109 (207)
T PF05010_consen 80 QAYADLNSLEKSFSDLHKRYEK---QKEVIEGY 109 (207)
T ss_pred HHHHHHHHHHhhHHHHHHHHHH---HHHHHHHH
Confidence 3778888899999988888876 44455555
No 151
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=35.57 E-value=8.5e+02 Score=29.20 Aligned_cols=74 Identities=16% Similarity=0.309 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHH
Q 045851 49 RLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAK 128 (473)
Q Consensus 49 r~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~ 128 (473)
|.+++|....+...+.+-+.|+|-+..-|. |-.++..++++--.+| .+.+++.+.-..|+--|+.++-.-++
T Consensus 440 q~ql~es~k~~e~lq~kneellk~~e~q~~-----Enk~~~~~~~ekd~~l---~~~kq~~d~e~~rik~ev~eal~~~k 511 (861)
T PF15254_consen 440 QNQLQESLKSQELLQSKNEELLKVIENQKE-----ENKRLRKMFQEKDQEL---LENKQQFDIETTRIKIEVEEALVNVK 511 (861)
T ss_pred HHHHHHHHHhHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555444333 2233444443333333 23455555555555555555544444
Q ss_pred HH
Q 045851 129 QF 130 (473)
Q Consensus 129 ~~ 130 (473)
.+
T Consensus 512 ~~ 513 (861)
T PF15254_consen 512 SL 513 (861)
T ss_pred HH
Confidence 33
No 152
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=35.37 E-value=6.7e+02 Score=27.97 Aligned_cols=56 Identities=21% Similarity=0.274 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045851 83 RKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEK 138 (473)
Q Consensus 83 kE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lkelE~Er 138 (473)
..-+.|...|+.|-+-|+.|=.+|+.++.....+..-|..++........++++=+
T Consensus 278 ~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~ 333 (560)
T PF06160_consen 278 EENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVS 333 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467778888888889999999999998888888888888777776666655433
No 153
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=35.03 E-value=4.2e+02 Score=25.54 Aligned_cols=9 Identities=22% Similarity=0.593 Sum_probs=4.2
Q ss_pred HHhhhhhhh
Q 045851 163 LQLAEIWRE 171 (473)
Q Consensus 163 LqmAEvWRE 171 (473)
..-|..|-|
T Consensus 148 ~~~anrwTD 156 (188)
T PF03962_consen 148 KEAANRWTD 156 (188)
T ss_pred HHHHHHHHh
Confidence 344555543
No 154
>PRK14163 heat shock protein GrpE; Provisional
Probab=34.70 E-value=4.9e+02 Score=26.14 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHH
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDEL 99 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~EL 99 (473)
+..|+.+|...+..+.+|...-.+...+++.|.|+...|+..-+.--.+++-..|-.+-+.|
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnL 103 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDV 103 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Confidence 56788888888888888877777777788888888877766444433333333333333333
No 155
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=34.70 E-value=7.8e+02 Score=28.54 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=10.4
Q ss_pred cccCCCCCchhhhHHhhhcC
Q 045851 237 EYVAPASDSIFSIFEELRQG 256 (473)
Q Consensus 237 sy~P~~~dD~~sifeel~~~ 256 (473)
.|.|.++. +.||+|+++.
T Consensus 367 Vf~p~~sQ--~~VF~e~~~l 384 (670)
T KOG0239|consen 367 VFGPLASQ--DDVFEEVSPL 384 (670)
T ss_pred ecCCcccH--HHHHHHHHHH
Confidence 34454443 4677777665
No 156
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=33.51 E-value=6e+02 Score=26.81 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 045851 38 VSALQAELVQAR 49 (473)
Q Consensus 38 v~aLk~EL~~Ar 49 (473)
|+-|+.+|..++
T Consensus 140 I~~L~k~le~~~ 151 (294)
T COG1340 140 IKELRKELEDAK 151 (294)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 157
>PRK14144 heat shock protein GrpE; Provisional
Probab=33.37 E-value=3e+02 Score=27.26 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=17.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 045851 111 FLNSKFVNELAKAESSAKQFMQ 132 (473)
Q Consensus 111 ~ln~KL~~ELaE~Kss~~~~lk 132 (473)
....+++++|..+--.|.+|+.
T Consensus 92 ~a~~~~~~~LLpV~DnLerAl~ 113 (199)
T PRK14144 92 YGVEKLISALLPVVDSLEQALQ 113 (199)
T ss_pred HHHHHHHHHHhhHHhHHHHHHH
Confidence 4567888999998888888765
No 158
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=33.32 E-value=8.6e+02 Score=28.61 Aligned_cols=90 Identities=22% Similarity=0.347 Sum_probs=48.5
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh----------hhhH-----hhhh-------HHHhHHHHHh
Q 045851 109 IDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLL-EES----------KTMR-----IREE-------VEEERNMLQL 165 (473)
Q Consensus 109 ~E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaRell-E~v----------es~k-----~reE-------~eeER~MLqm 165 (473)
+|.--++|-.||.|.|..=.+.++||-.=.....-| ..| +++| +.+| +|+--++-.|
T Consensus 74 ~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~i 153 (717)
T PF09730_consen 74 LELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEI 153 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455677788888877777777763222211111 112 2222 2222 2333444445
Q ss_pred hhhhhhhhhhhhHhhhhhhhhhhhHHHHHHHHHHHHHHhhh
Q 045851 166 AEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSN 206 (473)
Q Consensus 166 AEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~FL~sk 206 (473)
|| -+|.||=-+|..=-.+=.-|+-||..|+..-
T Consensus 154 ae--------~qleEALesl~~EReqk~~LrkEL~~~~~~~ 186 (717)
T PF09730_consen 154 AE--------KQLEEALESLKSEREQKNALRKELDQHLNIE 186 (717)
T ss_pred HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 55 3466666666555555556888888887653
No 159
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=33.02 E-value=7.5e+02 Score=27.83 Aligned_cols=16 Identities=38% Similarity=0.576 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 045851 90 AIVDELKDELSKERKS 105 (473)
Q Consensus 90 a~i~slk~ELe~ERk~ 105 (473)
..+..++..|+.|+..
T Consensus 300 ~ll~~~~~q~~~e~~~ 315 (650)
T TIGR03185 300 NLLDSTKAQLQKEEQS 315 (650)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666666666643
No 160
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.51 E-value=3.5e+02 Score=27.22 Aligned_cols=13 Identities=38% Similarity=0.483 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 045851 134 YEEEKRARQLLEE 146 (473)
Q Consensus 134 lE~ErkaRellE~ 146 (473)
++-+|+.=.++|.
T Consensus 214 ie~erk~l~~lE~ 226 (230)
T cd07625 214 IEYERKKLSLLER 226 (230)
T ss_pred HHHHHHHHHHHHh
Confidence 4445554444443
No 161
>PRK14160 heat shock protein GrpE; Provisional
Probab=32.43 E-value=5.2e+02 Score=25.82 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHH
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKME 89 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~ 89 (473)
+.+|+.+|...+..+.+|...-.....+++.+.|+.+.|+...+.--.+++-
T Consensus 63 ~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~ 114 (211)
T PRK14160 63 NNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVL 114 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555556666666666665544444444333
No 162
>PRK14141 heat shock protein GrpE; Provisional
Probab=32.05 E-value=2.6e+02 Score=27.81 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 045851 40 ALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNE 119 (473)
Q Consensus 40 aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~E 119 (473)
.|..+|...+.++.+|...-....-+++.|.|+...|+... ......+++++
T Consensus 35 ~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~----------------------------~~~a~~~~~~d 86 (209)
T PRK14141 35 PEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADA----------------------------RAYGIAGFARD 86 (209)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHH
Confidence 35666666777777776555555556666666555443311 13456788899
Q ss_pred HHHHHHHHHHHHH
Q 045851 120 LAKAESSAKQFMQ 132 (473)
Q Consensus 120 LaE~Kss~~~~lk 132 (473)
|..+--.|.+|+.
T Consensus 87 LLpViDnLerAl~ 99 (209)
T PRK14141 87 MLSVSDNLRRALD 99 (209)
T ss_pred HhhhHhHHHHHHh
Confidence 9998888888765
No 163
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=31.67 E-value=1.1e+03 Score=29.17 Aligned_cols=81 Identities=22% Similarity=0.372 Sum_probs=53.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhHhh-h
Q 045851 78 NSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFM--QYYEEEKRARQLLEESKTMRIR-E 154 (473)
Q Consensus 78 ~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~l--kelE~ErkaRellE~ves~k~r-e 154 (473)
..||+ ||...+-+|..||-++|+.-+.+-..-.++..||++.--++.=+. ||+-.|| +--|--+|++.+=| +
T Consensus 268 qEfkS----kim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEER-aesLQ~eve~lkEr~d 342 (1243)
T KOG0971|consen 268 QEFKS----KIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEER-AESLQQEVEALKERVD 342 (1243)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 34554 466677789999999999999999999999999999887776443 3333333 33343344444433 3
Q ss_pred hHHHhHHHH
Q 045851 155 EVEEERNML 163 (473)
Q Consensus 155 E~eeER~ML 163 (473)
|++-|-+||
T Consensus 343 eletdlEIL 351 (1243)
T KOG0971|consen 343 ELETDLEIL 351 (1243)
T ss_pred HHHHHHHHH
Confidence 344444433
No 164
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=31.48 E-value=9.1e+02 Score=28.35 Aligned_cols=11 Identities=18% Similarity=0.181 Sum_probs=4.3
Q ss_pred HHHHHhhhhhh
Q 045851 160 RNMLQLAEIWR 170 (473)
Q Consensus 160 R~MLqmAEvWR 170 (473)
..+.++.+-|+
T Consensus 661 ~~~~~~~~~~~ 671 (908)
T COG0419 661 EKVEELEAEIR 671 (908)
T ss_pred HHHHHHHHHHH
Confidence 33333444333
No 165
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=31.24 E-value=1e+03 Score=28.91 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHH
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENL 69 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L 69 (473)
+.+|.+||+++|..-++-..|++..+++...|
T Consensus 367 l~~le~~~~e~q~~~qe~~~e~eqLr~elaql 398 (980)
T KOG0980|consen 367 LLALEGELQEQQREAQENREEQEQLRNELAQL 398 (980)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888887766666555555555554433
No 166
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=31.14 E-value=1.3e+03 Score=30.13 Aligned_cols=66 Identities=24% Similarity=0.287 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 045851 36 SFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKE 102 (473)
Q Consensus 36 Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~E 102 (473)
+.|..|+.||.-....|.+|..+--..+..+...++.+..+++.-.. +-..+..+...+..-+...
T Consensus 1314 ~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~-~~~ql~~~~~rL~~~~~e~ 1379 (1822)
T KOG4674|consen 1314 SEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTK-ELEQLEDLKTRLAAALSEK 1379 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888888777776665555556666666554333 3333444444444444433
No 167
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=31.05 E-value=1.6e+02 Score=25.40 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=35.7
Q ss_pred ccccccchhhH--HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhh
Q 045851 27 LLEDQVTTFSF--VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNS 79 (473)
Q Consensus 27 leEq~~s~~Sl--v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~ 79 (473)
|-++++..|.| |.-+..||++.++.|+.|++|--..+=.+=+|---||-||.+
T Consensus 15 fp~~~~p~m~l~svgd~e~eLerCK~sirrLeqevnkERFrmiYLQTlLAkErks 69 (79)
T PF09036_consen 15 FPDSEPPVMELRSVGDIEQELERCKASIRRLEQEVNKERFRMIYLQTLLAKERKS 69 (79)
T ss_dssp STTS-------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred CCccCCcHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44444443322 667899999999999999999887777788888778777654
No 168
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=30.73 E-value=1.7e+02 Score=25.74 Aligned_cols=46 Identities=4% Similarity=-0.026 Sum_probs=33.1
Q ss_pred hcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHH
Q 045851 23 NHVKLLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVR 71 (473)
Q Consensus 23 nriwleEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~K 71 (473)
-.+|+-++ .+.-...|+.++..++.++.+|.++....+.+|+.|-.
T Consensus 17 y~l~~g~~---G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 17 YSLWFGKN---GILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHhccCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34554443 23336788889999999999998888888888776644
No 169
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=30.24 E-value=5.7e+02 Score=25.59 Aligned_cols=75 Identities=16% Similarity=0.237 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHH
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFV 117 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 117 (473)
|.-++.+|..|+..+-+++..++....+++.+.... ..|. .+.+.=+..-|-.||
T Consensus 33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~----~k~e---------------------~~A~~Al~~g~E~LA 87 (225)
T COG1842 33 IRDMESELAKARQALAQAIARQKQLERKLEEAQARA----EKLE---------------------EKAELALQAGNEDLA 87 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---------------------HHHHHHHHCCCHHHH
Confidence 667788888888888888888887777766554333 2233 333334444557888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045851 118 NELAKAESSAKQFMQYYEEE 137 (473)
Q Consensus 118 ~ELaE~Kss~~~~lkelE~E 137 (473)
+++.+.+.++...++-++.+
T Consensus 88 r~al~~~~~le~~~~~~~~~ 107 (225)
T COG1842 88 REALEEKQSLEDLAKALEAE 107 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888877776665554
No 170
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=30.00 E-value=1.5e+02 Score=30.25 Aligned_cols=51 Identities=25% Similarity=0.479 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh-hhhHHHHH
Q 045851 39 SALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWY-VRKHYKME 89 (473)
Q Consensus 39 ~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wK-skE~eki~ 89 (473)
.-.+.|+.+....|+.|..|......-.+..+++|.+++..|- +...+++.
T Consensus 49 ~~~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~~~k~~wf~~~~~~~i~ 100 (298)
T PF11262_consen 49 SKKKKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQEEKDSWFSSKDPEKIE 100 (298)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCChhhHH
Confidence 4456678888899999999999988889999999999999998 34445554
No 171
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=28.84 E-value=1.4e+02 Score=34.49 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 045851 49 RLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKS 105 (473)
Q Consensus 49 r~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~ 105 (473)
|+++..|.++++...+ .+..+..+-|. -...|-++++.+||. ||||||-
T Consensus 3 RdkL~~Lq~ek~~E~~---~l~~~~~~lk~-~~~~el~~Lk~~vqk----LEDEKKF 51 (654)
T PF09798_consen 3 RDKLELLQQEKQKERQ---ALKSSVEELKE-SHEEELNKLKSEVQK----LEDEKKF 51 (654)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHH-HhHHHHHHHHHHHHH----HHHHHHH
Confidence 6677888777764443 34443333222 223455677777776 7888873
No 172
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=28.22 E-value=1.2e+03 Score=28.53 Aligned_cols=94 Identities=18% Similarity=0.116 Sum_probs=65.9
Q ss_pred CCcchHHHHHhhhccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHH
Q 045851 11 CSKTAREAYCLYNHVK-LLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKME 89 (473)
Q Consensus 11 ~lkTs~ellkvlnriw-leEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~ 89 (473)
++..++.++.|||..- =.=.+...-+.|.-+..+|.+-++.|++-+++--.+++.++. |....++++....|--.++
T Consensus 155 G~~~~t~l~~vl~~~~d~LyKP~GrnP~iNq~l~klkq~~~ei~e~eke~a~yh~lLe~--r~~~~~rl~~l~~elr~~~ 232 (984)
T COG4717 155 GSPASTKLLEVLNKEADSLYKPSGRNPQINQLLEKLKQERNEIDEAEKEYATYHKLLES--RRAEHARLAELRSELRADR 232 (984)
T ss_pred CCcchHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHH
Confidence 4556788899999875 223455566889999999999999999988888888777664 3344556666666666666
Q ss_pred HHHHHHHHHHHHHHHhh
Q 045851 90 AIVDELKDELSKERKSR 106 (473)
Q Consensus 90 a~i~slk~ELe~ERk~R 106 (473)
..|+.+.+.++.=+.++
T Consensus 233 ~~i~~~~~~v~l~~~lq 249 (984)
T COG4717 233 DHIRALRDAVELWPRLQ 249 (984)
T ss_pred HHHHHHHHHHhhHHHHH
Confidence 66666666666544443
No 173
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=28.21 E-value=5.6e+02 Score=27.21 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhch
Q 045851 39 SALQAELVQARLRIHELEDEHRSSK 63 (473)
Q Consensus 39 ~aLk~EL~~Ar~rI~eL~~E~~s~~ 63 (473)
+.|+.|+..-|.++.|+.-+.+..|
T Consensus 82 k~L~~Ev~~Lrqkl~E~qGD~KlLR 106 (319)
T PF09789_consen 82 KKLKEEVEELRQKLNEAQGDIKLLR 106 (319)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHH
Confidence 5566666666666666655544333
No 174
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=27.49 E-value=1.1e+03 Score=27.88 Aligned_cols=48 Identities=19% Similarity=0.311 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhH
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKH 85 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~ 85 (473)
+.-|+..+..|-..|..|..|-...+.++..+-.+..+++..|++.-+
T Consensus 354 ~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q 401 (717)
T PF09730_consen 354 LEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQ 401 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556889999999999999999999999888888888888876665433
No 175
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=27.45 E-value=1.7e+02 Score=23.93 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHH
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLRE 75 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaE 75 (473)
+..++.++..+|..+..|+.-..-+...|+.+++.+.+
T Consensus 61 ~~~~r~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~ 98 (125)
T PF13801_consen 61 MRALRQELRAARQELRALLAAPPPDEAAIEALLEEIRE 98 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44555555555555555555444445555555544443
No 176
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=27.31 E-value=7.8e+02 Score=26.32 Aligned_cols=98 Identities=6% Similarity=0.005 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHH--HHHh-----------------------------HhhhhhhhHHH
Q 045851 39 SALQAELVQARLRIHELEDEHRSSKKKYENLVRK--LREE-----------------------------RNSWYVRKHYK 87 (473)
Q Consensus 39 ~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~Kq--laEE-----------------------------K~~wKskE~ek 87 (473)
..+..++.....+|..+..+.+..+...+.+-++ +..+ ..+--..+...
T Consensus 168 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 247 (457)
T TIGR01000 168 EAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGTKVANFNPYQSLYENYQAQLKSASDKDQKNQVKSTILATIQQQIDQ 247 (457)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH-------------HHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 045851 88 MEAIVDELKDELSK-------------ERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEE 136 (473)
Q Consensus 88 i~a~i~slk~ELe~-------------ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lkelE~ 136 (473)
+++.|..++.++.. +.+..+-.+.....+..+|.+++..+..+...|+.
T Consensus 248 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~ 309 (457)
T TIGR01000 248 LQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKS 309 (457)
T ss_pred HHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 177
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=27.22 E-value=6e+02 Score=24.87 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=28.6
Q ss_pred HHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHH
Q 045851 52 IHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKA 123 (473)
Q Consensus 52 I~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~ 123 (473)
...|++......+++..+-+++ ++--.-|...|..+..-|..|...-.+==...-.+|..+..|-.|+.+.
T Consensus 138 n~~Le~~~~~le~~l~~~k~~i-e~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l 208 (221)
T PF05700_consen 138 NEQLEAMLKRLEKELAKLKKEI-EEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQL 208 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555544444 2333333334444444444433332222222223344444444444443
No 178
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=27.21 E-value=4.9e+02 Score=29.82 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=40.4
Q ss_pred CcchHHHHH-hhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHH
Q 045851 12 SKTAREAYC-LYNHVKLLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVR 71 (473)
Q Consensus 12 lkTs~ellk-vlnriwleEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~K 71 (473)
|.|++++.+ +..+|.+.|+. |-.|++..+-||.||+.|++-+.-..|.+-+|.-
T Consensus 585 lst~kDlekG~Aeki~~me~E------i~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLts 639 (790)
T PF07794_consen 585 LSTSKDLEKGYAEKIGFMEME------IGGLQADKQTARNQIHRLEQRREELSKRVMDLTS 639 (790)
T ss_pred eccccchhhhhHhhhhhhhhh------hcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777766 44566676665 7789999999999999999988776666665543
No 179
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=26.94 E-value=1.1e+03 Score=27.91 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=24.8
Q ss_pred HHHHhhhccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHH
Q 045851 17 EAYCLYNHVK-LLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYEN 68 (473)
Q Consensus 17 ellkvlnriw-leEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~ 68 (473)
|++....++- +.+++...=.-|..|+..|-.++.+..-|..+.-..+.+++.
T Consensus 302 E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~ 354 (775)
T PF10174_consen 302 ELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEE 354 (775)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3444444444 333333333445555555555555555555555444444443
No 180
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=26.90 E-value=8.9e+02 Score=26.76 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHH
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKL 73 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~Kql 73 (473)
|..+..++...+.+-..|+++..+.+.+|..+-.++
T Consensus 47 i~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql 82 (420)
T COG4942 47 IAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQL 82 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443
No 181
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=26.88 E-value=7.2e+02 Score=26.24 Aligned_cols=136 Identities=24% Similarity=0.196 Sum_probs=65.3
Q ss_pred hhhhHHHhHHHHHhhhhhhh---hhhhhhH----hhhhhhhhhh-hHHHHHHHHHHHHHHhh----h---cCCcchHHHH
Q 045851 152 IREEVEEERNMLQLAEIWRE---ERVQMKL----VDAKLALEHK-YSQINKLVEELENFLMS----N---AATLDVMALR 216 (473)
Q Consensus 152 ~reE~eeER~MLqmAEvWRE---ERVQMKL----~eAk~~leeK-~s~ldkL~~elE~FL~s----k---~~~~d~~~~r 216 (473)
+.+.++++. ++|++|++ |||+-+. ..|+..+|.| ...-+.|.++||.=.+- | ..+.+.++.+
T Consensus 69 L~~~~kerl---~~aely~e~~~e~v~~eYe~E~~aAk~e~E~~~~lLke~l~seleeKkrkieeeR~smDlts~~~e~~ 145 (291)
T KOG4466|consen 69 LDESRKERL---RVAELYREYCVERVEREYECEIKAAKKEYESKKKLLKENLISELEEKKRKIEEERLSMDLTSDSMESK 145 (291)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Confidence 444455544 45555555 6776553 4566667664 44456788888776554 1 1223322222
Q ss_pred H--HH-HHHHHhhccCcCCCCcccccC-C---CCCchhhhHHhhhcCccccc-------ccccccCCCCCCCCCCCcccc
Q 045851 217 K--AE-LIIRAVKLLNIQDSDEFEYVA-P---ASDSIFSIFEELRQGVDARE-------MEVEPLTNYSPIYDASNHHIV 282 (473)
Q Consensus 217 ~--ae-~~rqs~~Sv~~~~~kefsy~P-~---~~dD~~sifeel~~~~e~~~-------~ei~~c~~~sp~~~ask~~~~ 282 (473)
. ++ ..++...-.++-+ +--.++| + .-. .--||+|++-+. ..+ ....|.+++.|.++++-+.+-
T Consensus 146 ~l~~rk~rrd~~~p~k~r~-~r~~sa~~~~~y~L~-d~~i~eD~~~i~-k~~s~~~P~~~k~~~h~~~~~~~~~~~f~~r 222 (291)
T KOG4466|consen 146 PLYTRKLRRDPNDPEKGRD-KRNKSAPDQLVYQLQ-DLNILEDLRTIN-KDESAVQPQQVKQFPHVNAEPGMNDSDFSAR 222 (291)
T ss_pred hHHhhhcccCCCCcccccc-cccCCChHHHHHhhh-hhhHHHHHhhhc-cccCCCCCccccCCCCcccCcccccchhhcc
Confidence 2 11 2223333333333 2233344 1 112 244677877662 222 244455666666665555444
Q ss_pred CCCcccccccc
Q 045851 283 SPEVNDFDNNH 293 (473)
Q Consensus 283 sp~~~~~~~~~ 293 (473)
.-+..+++...
T Consensus 223 ieeg~l~y~~~ 233 (291)
T KOG4466|consen 223 IEEGKLLYDFR 233 (291)
T ss_pred cccchhhhhhH
Confidence 44555444433
No 182
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=26.11 E-value=7.1e+02 Score=25.31 Aligned_cols=21 Identities=14% Similarity=0.376 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045851 38 VSALQAELVQARLRIHELEDE 58 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E 58 (473)
+..|+.++.++++++..|.++
T Consensus 83 l~~l~~~~~~l~a~~~~l~~~ 103 (423)
T TIGR01843 83 AAELESQVLRLEAEVARLRAE 103 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444443
No 183
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.11 E-value=9.7e+02 Score=26.90 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhh----------hHHHHHHHHHHHHHHHHH----
Q 045851 36 SFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVR----------KHYKMEAIVDELKDELSK---- 101 (473)
Q Consensus 36 Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKsk----------E~eki~a~i~slk~ELe~---- 101 (473)
-++-.|+.++-+|+.+|++-.++--..++.|-+=.+.|..+.-.-..+ |-.-..++|..++.=+--
T Consensus 345 ~ll~tlq~~iSqaq~~vq~qma~lv~a~e~i~~e~~rl~q~nd~l~~~~~l~t~~Qq~e~~~lp~ave~l~ql~~~~r~~ 424 (542)
T KOG0993|consen 345 DLLVTLQAEISQAQSEVQKQMARLVVASETIADEDSRLRQINDLLTTVGELETQVQQAEVQNLPAAVEQLAQLYKQRRTS 424 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhHhhhhcchhhHHHHHHHHHHHHHH
Confidence 356789999999999999888887777777777777776665544332 223333444433322211
Q ss_pred HHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045851 102 ERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEES 147 (473)
Q Consensus 102 ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaRellE~v 147 (473)
=+.-+.-+|-.-.+|.+|+--.+ -.||+|+-++.=+|.-
T Consensus 425 ~~~~l~a~ehv~e~l~~ei~~L~-------eqle~e~~~~~~le~q 463 (542)
T KOG0993|consen 425 LQQELDASEHVQEDLVKEIQSLQ-------EQLEKERQSEQELEWQ 463 (542)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 11223335556667766654433 2467777777766543
No 184
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=26.10 E-value=1.2e+03 Score=27.79 Aligned_cols=69 Identities=20% Similarity=0.198 Sum_probs=42.3
Q ss_pred HHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045851 72 KLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRAR 141 (473)
Q Consensus 72 qlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaR 141 (473)
|+.+||..-...+.+.-++.. .=+.+-..|+|+++..+.--++.-+|=..-|.-...+-|+.++++++.
T Consensus 269 ~~leeKrlk~~~~~eek~~~k-eE~~kekee~Klekd~KKqqkekEkeEKrrKdE~Ek~kKqeek~KR~k 337 (811)
T KOG4364|consen 269 QVLEEKRLKEKEQKEEKKAIK-EENNKEKEETKLEKDIKKQQKEKEKEEKRRKDEQEKLKKQEEKQKRAK 337 (811)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 355666554443333333332 223445567777777777777777777777777777777777777665
No 185
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=25.99 E-value=3e+02 Score=24.67 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhh
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRK 84 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE 84 (473)
+.+-+.|...=...-.+++.+....+++|+.|..+|.+.|..+++|+
T Consensus 69 ~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~ 115 (139)
T PF05615_consen 69 LEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKE 115 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666667777777777777777777777777777665
No 186
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=25.85 E-value=6.2e+02 Score=24.53 Aligned_cols=73 Identities=16% Similarity=0.232 Sum_probs=50.5
Q ss_pred hHHHHHhhhcccccccccchhh---HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHH
Q 045851 15 AREAYCLYNHVKLLEDQVTTFS---FVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEA 90 (473)
Q Consensus 15 s~ellkvlnriwleEq~~s~~S---lv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a 90 (473)
+.+|..++.++ +|-+.-+.+ +-.-|+..|++|+.....|..+-+....++..+...|...-..|+. |.+.+..
T Consensus 59 s~dLe~~l~rL--eEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~-ee~~~~~ 134 (182)
T PF15035_consen 59 SPDLEEALIRL--EEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWRE-EEENFNQ 134 (182)
T ss_pred cccHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 34566666664 443322222 3455888999999999999999999999999988888877777875 3333433
No 187
>PRK14157 heat shock protein GrpE; Provisional
Probab=25.62 E-value=3.8e+02 Score=27.19 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 045851 40 ALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNE 119 (473)
Q Consensus 40 aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~E 119 (473)
.|..+|...+.++.+|...-...+-+.+.+.|+...|+..-+ ...+.++++.
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~----------------------------~~a~~~~~~d 132 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFR----------------------------QHGIIDVLTA 132 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHH
Confidence 466677777777777765555556666666666655433111 1225778888
Q ss_pred HHHHHHHHHHHHH
Q 045851 120 LAKAESSAKQFMQ 132 (473)
Q Consensus 120 LaE~Kss~~~~lk 132 (473)
|..+--.|.+|+.
T Consensus 133 LLpvlDnLeRAl~ 145 (227)
T PRK14157 133 LLPALDDIDRIRE 145 (227)
T ss_pred HhhhhhhHHHHHh
Confidence 8888777777654
No 188
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.33 E-value=3e+02 Score=23.73 Aligned_cols=56 Identities=23% Similarity=0.461 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHH---HHHHHhHhhhhhhhHHHHHHHHH
Q 045851 34 TFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLV---RKLREERNSWYVRKHYKMEAIVD 93 (473)
Q Consensus 34 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~---KqlaEEK~~wKskE~eki~a~i~ 93 (473)
.+--|.-|++|.+.-.-.-+.|.+|.+..++..+.|. .+|.+|-..|. +++++.+-
T Consensus 16 AvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQ----erlrsLLG 74 (79)
T COG3074 16 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQ----ERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHh
Confidence 3444777888888777777777777776666655554 47888888885 67776654
No 189
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=25.22 E-value=1e+03 Score=26.85 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhHHHH--HHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 045851 43 AELVQARLRIHELEDEHRSSKKKYENL--VRKLREERNSWYVRKHYKMEAIVDELKDELSKER 103 (473)
Q Consensus 43 ~EL~~Ar~rI~eL~~E~~s~~~eie~L--~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ER 103 (473)
++|..-+....++++|..+.+.+...+ .+++.|.|+ .+...-+..+..||..||
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~-------~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKL-------QQLQTKLKKCQKELKEER 402 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 455556666666666666655444433 234444444 223333444445555555
No 190
>PRK03918 chromosome segregation protein; Provisional
Probab=25.13 E-value=1.1e+03 Score=27.07 Aligned_cols=6 Identities=0% Similarity=0.141 Sum_probs=2.2
Q ss_pred Hhhhcc
Q 045851 20 CLYNHV 25 (473)
Q Consensus 20 kvlnri 25 (473)
+++.+|
T Consensus 149 ~~~~~~ 154 (880)
T PRK03918 149 KVVRQI 154 (880)
T ss_pred HHHHHH
Confidence 333333
No 191
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=25.09 E-value=2.1e+02 Score=23.19 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHH
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVR 71 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~K 71 (473)
+..+..++..++.++.+|..|....+.++..|-.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566677777777777777776666666665543
No 192
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=25.02 E-value=5.2e+02 Score=24.36 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhh---hhhhhHHHHHHHHHHHHHHHHH
Q 045851 47 QARLRIHELEDEHRSSKKKYENLVRKLREERNS---WYVRKHYKMEAIVDELKDELSK 101 (473)
Q Consensus 47 ~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~---wKskE~eki~a~i~slk~ELe~ 101 (473)
-.=.|+.-++.+....+.+++.+.+|....... +...+.++...-|+.++.||+.
T Consensus 115 l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 115 LVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 334566677777777777777777776433221 1223334444444455544444
No 193
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=24.78 E-value=68 Score=33.82 Aligned_cols=31 Identities=35% Similarity=0.467 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhHHHHHHH
Q 045851 42 QAELVQARLRIHELEDEHRSSKKKYENLVRK 72 (473)
Q Consensus 42 k~EL~~Ar~rI~eL~~E~~s~~~eie~L~Kq 72 (473)
+.||+-+..||.||+++.++.++++..|-++
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5678888888888888888887777666543
No 194
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.75 E-value=1e+03 Score=26.72 Aligned_cols=101 Identities=16% Similarity=0.167 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh----chhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHh
Q 045851 38 VSALQAELVQARLRIHELEDEHRS----SKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLN 113 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s----~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln 113 (473)
+.-|+++|+-|++.+.-..+=--. ....|+-..++-.+|-++-+.-..+-+...=-.+-.-|+.||..-++- -
T Consensus 40 l~~lrtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~~~~~ye~q~~~~leqertq~qq~---~ 116 (542)
T KOG0993|consen 40 LGHLRTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQASQKSPNPTYECQMCQNLEQERTQLQQN---E 116 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHHhcCCCccHHHHHHHHHHHHHHHHHHH---H
Confidence 567888888888876655432221 124677777887788777776666666655555566688887655443 4
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 045851 114 SKFVNELAKAESSAKQ--FMQYYEEEKRAR 141 (473)
Q Consensus 114 ~KL~~ELaE~Kss~~~--~lkelE~ErkaR 141 (473)
.++-+|+...+.-+++ +.-+||+|.+-+
T Consensus 117 e~~erEv~~l~~llsr~~~~~~Lenem~ka 146 (542)
T KOG0993|consen 117 EKLEREVKALMELLSRGQYQLDLENEMDKA 146 (542)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 6888999999888888 788888887543
No 195
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=24.55 E-value=6.8e+02 Score=24.61 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhh
Q 045851 37 FVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYV 82 (473)
Q Consensus 37 lv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKs 82 (473)
+|+||+. -|.-|+.|+=|+.-....+..|-+..+.-|.++.+
T Consensus 2 visALK~----LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~ 43 (178)
T PF14073_consen 2 VISALKN----LQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQS 43 (178)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHH
Confidence 5666654 46788899999888888888887777777666654
No 196
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=24.52 E-value=6.7e+02 Score=24.49 Aligned_cols=85 Identities=24% Similarity=0.405 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-------hchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHH----Hh
Q 045851 37 FVSALQAELVQARLRIHELEDEHR-------SSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKER----KS 105 (473)
Q Consensus 37 lv~aLk~EL~~Ar~rI~eL~~E~~-------s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ER----k~ 105 (473)
-|..|+..|-.++.+++.+.+.-+ ..+.++.+| +++.++|-. -|.++...-|..+..+|+..- .+
T Consensus 69 Evr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L-~~L~~dknL---~eReeL~~kL~~~~~~l~~~~~ki~~L 144 (194)
T PF15619_consen 69 EVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHL-KKLSEDKNL---AEREELQRKLSQLEQKLQEKEKKIQEL 144 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888887777766554 334444443 334443322 245666666666666665532 24
Q ss_pred hhhhhHHhHHHHHHHHHHHH
Q 045851 106 RKQIDFLNSKFVNELAKAES 125 (473)
Q Consensus 106 Rkr~E~ln~KL~~ELaE~Ks 125 (473)
.++++..|.-+.++|+-.+.
T Consensus 145 ek~leL~~k~~~rql~~e~k 164 (194)
T PF15619_consen 145 EKQLELENKSFRRQLASEKK 164 (194)
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 45555555555555554443
No 197
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.51 E-value=2.2e+02 Score=29.19 Aligned_cols=80 Identities=25% Similarity=0.285 Sum_probs=52.7
Q ss_pred hHhhhhhhhhhhhHHHHHHHHHHHHHHhh-h-cCCcchHHHHH-HHHHHHHhhccCcCCC------CcccccCC------
Q 045851 177 KLVDAKLALEHKYSQINKLVEELENFLMS-N-AATLDVMALRK-AELIIRAVKLLNIQDS------DEFEYVAP------ 241 (473)
Q Consensus 177 KL~eAk~~leeK~s~ldkL~~elE~FL~s-k-~~~~d~~~~r~-ae~~rqs~~Sv~~~~~------kefsy~P~------ 241 (473)
+|..-...+.+|+..|..=+.++|+||.+ + ....+...+.+ -+.++-.+.++++.+. ....|.|-
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~aG~v~V~G~Gl~ITi~d~~~~~~~~~~~~ 133 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLAGSVPVTGPGLVITIDDPGYSPNGVGPNS 133 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCcCCcEEEEecCCCCCcccCCCCc
Confidence 55555556677777777777777888877 3 22233344444 7788999999998873 22333332
Q ss_pred ---CCCchhhhHHhhhcC
Q 045851 242 ---ASDSIFSIFEELRQG 256 (473)
Q Consensus 242 ---~~dD~~sifeel~~~ 256 (473)
-++|+.+|.-+|++.
T Consensus 134 ~vv~~~dl~~viNeL~~s 151 (247)
T COG3879 134 QVVHDDDLQAVINELNIS 151 (247)
T ss_pred cccCHHHHHHHHHHHHhc
Confidence 246788999999987
No 198
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=24.45 E-value=8.9e+02 Score=25.93 Aligned_cols=41 Identities=29% Similarity=0.326 Sum_probs=19.7
Q ss_pred HHHHHHHHHHh--hhhHhh--hh--HHHhHHHHHhhhhhhhhhhhhh
Q 045851 137 EKRARQLLEES--KTMRIR--EE--VEEERNMLQLAEIWREERVQMK 177 (473)
Q Consensus 137 ErkaRellE~v--es~k~r--eE--~eeER~MLqmAEvWREERVQMK 177 (473)
||+.+.-.|.+ +-.+++ +| +++|+.+|+---..++=|+--.
T Consensus 392 errkqkeeeklk~e~qkikeleek~~eeedal~~all~~qeirl~~~ 438 (445)
T KOG2891|consen 392 ERRKQKEEEKLKAEEQKIKELEEKIKEEEDALLLALLNLQEIRLIAE 438 (445)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44444445555 333333 22 3566666655444555554433
No 199
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.41 E-value=1e+03 Score=26.70 Aligned_cols=31 Identities=35% Similarity=0.275 Sum_probs=18.8
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 045851 27 LLEDQVTTFSFVSALQAELVQARLRIHELED 57 (473)
Q Consensus 27 leEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~ 57 (473)
|++.+..+--.-+.|+.|-.+-.+|++.|+.
T Consensus 234 ledd~~~~gd~~SrlkqEnlqLvhR~h~LEE 264 (502)
T KOG0982|consen 234 LEDDQNIAGDRSSRLKQENLQLVHRYHMLEE 264 (502)
T ss_pred hhcchhccccchhHHHHHHHHHHHHHHHHHH
Confidence 4444443333456777777777777777654
No 200
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=24.33 E-value=2e+02 Score=30.88 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=30.9
Q ss_pred Hhhhccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 045851 20 CLYNHVK-LLEDQVTTFSFVSALQAELVQARLRIHELED 57 (473)
Q Consensus 20 kvlnriw-leEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~ 57 (473)
.+-|.+. +++|---.||||+.|+.||-.-+++...+..
T Consensus 206 r~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks 244 (372)
T COG3524 206 RIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKS 244 (372)
T ss_pred HhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777 7788778899999999999998888777643
No 201
>PRK04654 sec-independent translocase; Provisional
Probab=24.33 E-value=3.8e+02 Score=27.06 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 045851 90 AIVDELKDELSKERK 104 (473)
Q Consensus 90 a~i~slk~ELe~ERk 104 (473)
..+.+++.|+++|=+
T Consensus 41 ~~~~~vk~El~~El~ 55 (214)
T PRK04654 41 MQWDSVKQELERELE 55 (214)
T ss_pred HHHHHHHHHHHHhhh
Confidence 345555555555543
No 202
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=24.24 E-value=1.6e+02 Score=26.22 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERN 78 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~ 78 (473)
+..|-.++..-+.+|.+|+.|....+-+-++|.+.|.+...
T Consensus 17 l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 17 LGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67888899999999999999999999999999988876543
No 203
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=24.11 E-value=1e+03 Score=26.41 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHH
Q 045851 37 FVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDEL 99 (473)
Q Consensus 37 lv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~EL 99 (473)
+-..|+.-+.+.+.++..++.-......+...++..+.++....-.--.+..-..|..+..+.
T Consensus 78 l~~~l~~~~~~~~eq~~~l~~~~~ql~~~~~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~~~~ 140 (448)
T COG1322 78 LKARLQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPLREV 140 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777777777777788888888888888877665544434444444444443
No 204
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=23.60 E-value=1.5e+02 Score=29.54 Aligned_cols=47 Identities=19% Similarity=0.211 Sum_probs=40.4
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHH
Q 045851 27 LLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKL 73 (473)
Q Consensus 27 leEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~Kql 73 (473)
|-=.|-.|...|.+|+-|+.....-|..|+++-...=.+-+.|++.+
T Consensus 154 L~LKHNLNA~AI~sL~~e~~~~~~di~~Li~~m~~sI~ead~FI~~l 200 (201)
T PF11172_consen 154 LYLKHNLNAQAIASLQGEFSSIESDISQLIKEMERSIAEADAFIASL 200 (201)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33356677788999999999999999999999998888999998765
No 205
>PRK10132 hypothetical protein; Provisional
Probab=22.45 E-value=5.7e+02 Score=22.94 Aligned_cols=52 Identities=8% Similarity=0.189 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHH
Q 045851 49 RLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELS 100 (473)
Q Consensus 49 r~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe 100 (473)
++++..|..+-+..-..++.|++..+..--.--..-++|+.+.+...++-|.
T Consensus 11 ~~q~e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~ 62 (108)
T PRK10132 11 DDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMH 62 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666666666777777766544322223334445555555554444
No 206
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=22.27 E-value=5.2e+02 Score=22.38 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=38.9
Q ss_pred HHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045851 97 DELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEES 147 (473)
Q Consensus 97 ~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaRellE~v 147 (473)
...+.|++.+...+.-=.+|..+|..+++-..+.-..++.=.+-...|+.|
T Consensus 67 k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v 117 (126)
T PF13863_consen 67 KRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLEKV 117 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677777777777778888888888888888777777777777777766
No 207
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.21 E-value=1.3e+03 Score=26.97 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 045851 40 ALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNE 119 (473)
Q Consensus 40 aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~E 119 (473)
.|-.|=..-..+..||+++--..+.+||.+-.-|+.=...-|. .-++.++.|--+=+.+-+--.-+..-
T Consensus 40 ~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk-----------~~~~g~e~EesLLqESaakE~~yl~k 108 (772)
T KOG0999|consen 40 ELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKK-----------VARDGEEREESLLQESAAKEEYYLQK 108 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhccchhhHHHHHHHHHHhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------hhhHhhhhH----HHhHHHHH
Q 045851 120 LAKAESSAKQFMQYYEEEKRARQLLEES-------------KTMRIREEV----EEERNMLQ 164 (473)
Q Consensus 120 LaE~Kss~~~~lkelE~ErkaRellE~v-------------es~k~reE~----eeER~MLq 164 (473)
+.+...-+++..++|.+=+..++-|+.+ +-.|+|+|+ ..|-+||+
T Consensus 109 I~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rlls 170 (772)
T KOG0999|consen 109 ILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLS 170 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
No 208
>PRK14159 heat shock protein GrpE; Provisional
Probab=22.19 E-value=5.1e+02 Score=25.07 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=15.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 045851 111 FLNSKFVNELAKAESSAKQFMQ 132 (473)
Q Consensus 111 ~ln~KL~~ELaE~Kss~~~~lk 132 (473)
....+++++|..+--.|.+|+.
T Consensus 70 ~a~~~~~~~LLpV~DnlerAl~ 91 (176)
T PRK14159 70 YANESFAKDLLDVLDALEAAVN 91 (176)
T ss_pred HHHHHHHHHHhhHHhHHHHHHh
Confidence 4567788888888777777654
No 209
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=21.75 E-value=1.2e+03 Score=26.48 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 045851 36 SFVSALQAELVQARLRIHELEDEH 59 (473)
Q Consensus 36 Slv~aLk~EL~~Ar~rI~eL~~E~ 59 (473)
++|..|+.+|...+.++.+|...-
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y 311 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTM 311 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567888888888888877776643
No 210
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=21.65 E-value=4.7e+02 Score=26.40 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=20.7
Q ss_pred HHHHHhhhhhhHHhHHHHHHHHH-HHHHHHHHHHHH
Q 045851 100 SKERKSRKQIDFLNSKFVNELAK-AESSAKQFMQYY 134 (473)
Q Consensus 100 e~ERk~Rkr~E~ln~KL~~ELaE-~Kss~~~~lkel 134 (473)
.+.+.+|+....+|.+|..|+.+ +..-+.++.+.|
T Consensus 101 ~~~~~~~k~~~~~~~kl~~e~~~~~~~~l~K~K~~Y 136 (234)
T cd07686 101 KDKQQVKKSYIGVHQQIEAEMYKVTKTELEKLKCSY 136 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44466666777777777766655 444455544444
No 211
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=21.41 E-value=2.8e+02 Score=23.43 Aligned_cols=38 Identities=29% Similarity=0.541 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH------------HhhhchhhHHHHHHHH
Q 045851 36 SFVSALQAELVQARLRIHELED------------EHRSSKKKYENLVRKL 73 (473)
Q Consensus 36 Slv~aLk~EL~~Ar~rI~eL~~------------E~~s~~~eie~L~Kql 73 (473)
.||.+|+-||.|=+..-.+|.. .++....+|+.|++++
T Consensus 17 ~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~m 66 (79)
T PF06657_consen 17 EVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRM 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 4689999999999888888832 3344455666666666
No 212
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=21.41 E-value=8.7e+02 Score=24.67 Aligned_cols=10 Identities=20% Similarity=0.322 Sum_probs=4.4
Q ss_pred hhhHhhhhhh
Q 045851 175 QMKLVDAKLA 184 (473)
Q Consensus 175 QMKL~eAk~~ 184 (473)
+..+.+++..
T Consensus 252 ~~~l~~~~~~ 261 (423)
T TIGR01843 252 QARLAELRER 261 (423)
T ss_pred HHHHHHHHHH
Confidence 3445444443
No 213
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=21.18 E-value=5.5e+02 Score=22.32 Aligned_cols=56 Identities=20% Similarity=0.427 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhh---chhhHHHHHHHHHHhHhhhhhhhHHHHHHHHH
Q 045851 34 TFSFVSALQAELVQARLRIHELEDEHRS---SKKKYENLVRKLREERNSWYVRKHYKMEAIVD 93 (473)
Q Consensus 34 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s---~~~eie~L~KqlaEEK~~wKskE~eki~a~i~ 93 (473)
++=-|.-|++|++.-...=..|.+|.+. .+.++..=-.|+.+|..+|. +++++.+-
T Consensus 16 AvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq----erLr~LLG 74 (79)
T PRK15422 16 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ----ERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 3444778889888777777777766443 45567777788999999997 56665543
No 214
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=21.01 E-value=7.8e+02 Score=23.99 Aligned_cols=82 Identities=16% Similarity=0.230 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhhhchh---hHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHH
Q 045851 47 QARLRIHELEDEHRSSKK---KYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKA 123 (473)
Q Consensus 47 ~Ar~rI~eL~~E~~s~~~---eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~ 123 (473)
.-|.||++|+.=+....+ +.+++-+++.+.. -+..+....|..|...|-.=++....+...+...-.|++..
T Consensus 90 ~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~-----~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~l 164 (190)
T PF05266_consen 90 FLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKE-----AELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRL 164 (190)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778887766554433 3444555554442 24445555555555555432222222333333334555555
Q ss_pred HHHHHHHHHH
Q 045851 124 ESSAKQFMQY 133 (473)
Q Consensus 124 Kss~~~~lke 133 (473)
++.+.+.-++
T Consensus 165 ks~~~~l~~~ 174 (190)
T PF05266_consen 165 KSEAEALKEE 174 (190)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 215
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=20.80 E-value=8.5e+02 Score=24.35 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=27.7
Q ss_pred chHHHHHhhhccc--ccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHh
Q 045851 14 TAREAYCLYNHVK--LLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREE 76 (473)
Q Consensus 14 Ts~ellkvlnriw--leEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEE 76 (473)
.+++|..+|-+|- +-.-+..--.+.++|..|| |..|+..-....+.|..+-|...-|
T Consensus 62 ~sk~lG~~L~~i~~~~r~ie~~l~~~~~~~~~~l------i~pLe~k~e~d~k~i~~~~K~y~~E 120 (223)
T cd07605 62 GSQELGEALKQIVDTHKSIEASLEQVAKAFHGEL------ILPLEKKLELDQKVINKFEKDYKKE 120 (223)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 5667777776654 1111111122234444443 3445555555566666666655444
No 216
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=20.72 E-value=1.2e+03 Score=26.06 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045851 118 NELAKAESSAKQFMQYYEEEKRARQLLEES 147 (473)
Q Consensus 118 ~ELaE~Kss~~~~lkelE~ErkaRellE~v 147 (473)
+||.+-+..|.++.--|+.+++.+.+-|.+
T Consensus 100 r~~~~q~~e~~n~~~~l~~~~~~~r~~e~l 129 (459)
T KOG0288|consen 100 RELREQKAEFENAELALREMRRKMRIAERL 129 (459)
T ss_pred HHHHHhhhhhccchhhHHHHHHHHHHHHHH
Confidence 344555555555555555555444444444
No 217
>PRK14149 heat shock protein GrpE; Provisional
Probab=20.50 E-value=5.8e+02 Score=25.11 Aligned_cols=22 Identities=9% Similarity=0.087 Sum_probs=16.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 045851 111 FLNSKFVNELAKAESSAKQFMQ 132 (473)
Q Consensus 111 ~ln~KL~~ELaE~Kss~~~~lk 132 (473)
..+.+++++|..+--.|.+|+.
T Consensus 83 ~a~~~~~~~LLpVlDnLerAl~ 104 (191)
T PRK14149 83 YAYEKIALDLLPVIDALLGALK 104 (191)
T ss_pred HHHHHHHHHHhhHHhHHHHHHh
Confidence 4567888888888777777765
No 218
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.40 E-value=2.6e+02 Score=25.26 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHh
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREE 76 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEE 76 (473)
...|+.||++++.++.+-.++-...=.....||.+|+++
T Consensus 27 q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~ 65 (128)
T PF06295_consen 27 QAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQD 65 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999888877766655544444455566666654
No 219
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=20.16 E-value=9.9e+02 Score=24.83 Aligned_cols=20 Identities=5% Similarity=-0.019 Sum_probs=7.4
Q ss_pred hhhhhhhhHHHHHHHHHHHH
Q 045851 182 KLALEHKYSQINKLVEELEN 201 (473)
Q Consensus 182 k~~leeK~s~ldkL~~elE~ 201 (473)
.....|=|+++=.+.-=|.+
T Consensus 165 ~V~W~EINAA~Gq~~LLL~~ 184 (314)
T PF04111_consen 165 PVEWNEINAAWGQTALLLQT 184 (314)
T ss_dssp ---HHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHH
Confidence 33344444554444443333
No 220
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=20.05 E-value=2.2e+02 Score=28.36 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHH
Q 045851 49 RLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKME 89 (473)
Q Consensus 49 r~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~ 89 (473)
+..|..|.+|-...+...+.....|..||..|.. |.+||-
T Consensus 137 ~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~e-EKekVi 176 (202)
T PF06818_consen 137 RREVERLRAELQRERQRREEQRSSFEQERRTWQE-EKEKVI 176 (202)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3344555555566667788889999999999985 666653
Done!