Query 045851
Match_columns 473
No_of_seqs 96 out of 117
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 10:27:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045851.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045851hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ocy_A RAB guanine nucleotide 96.6 0.037 1.3E-06 50.7 13.4 89 15-126 5-94 (154)
2 2eqb_B RAB guanine nucleotide 95.0 0.22 7.5E-06 42.7 10.7 79 41-145 3-82 (97)
3 2e7s_A RAB guanine nucleotide 92.5 0.87 3E-05 41.0 10.2 73 38-126 10-82 (135)
4 3u59_A Tropomyosin beta chain; 91.1 2.7 9.4E-05 35.1 11.2 74 38-116 11-95 (101)
5 2eqb_B RAB guanine nucleotide 90.3 2.9 0.0001 35.7 10.7 79 38-123 7-95 (97)
6 3u1c_A Tropomyosin alpha-1 cha 89.9 4.6 0.00016 33.9 11.6 74 38-116 11-95 (101)
7 2hg7_A Phage-like element PBSX 89.3 0.07 2.4E-06 46.0 0.0 38 91-128 64-101 (110)
8 3oja_B Anopheles plasmodium-re 88.9 5.8 0.0002 40.7 13.8 22 190-211 565-586 (597)
9 2dfs_A Myosin-5A; myosin-V, in 84.7 11 0.00038 43.1 14.4 7 162-168 1046-1052(1080)
10 2w6b_A RHO guanine nucleotide 82.6 4.6 0.00016 31.5 7.0 20 98-117 32-51 (56)
11 2ocy_A RAB guanine nucleotide 81.3 25 0.00084 32.2 12.6 86 43-128 37-132 (154)
12 3oja_A Leucine-rich immune mol 79.8 17 0.00059 36.6 12.2 54 78-131 423-476 (487)
13 1i84_S Smooth muscle myosin he 76.8 6.7 0.00023 44.9 9.1 31 43-73 871-901 (1184)
14 2w6b_A RHO guanine nucleotide 73.2 6.7 0.00023 30.6 5.4 32 116-147 15-46 (56)
15 3na7_A HP0958; flagellar bioge 72.8 65 0.0022 30.4 16.0 36 38-73 41-76 (256)
16 1i84_S Smooth muscle myosin he 72.1 19 0.00064 41.3 11.1 33 37-69 858-890 (1184)
17 3oja_B Anopheles plasmodium-re 71.0 96 0.0033 31.7 16.2 95 39-147 452-552 (597)
18 3tnu_A Keratin, type I cytoske 67.6 45 0.0015 28.8 10.2 63 36-99 31-93 (131)
19 3o0z_A RHO-associated protein 67.5 79 0.0027 29.3 16.6 90 40-131 21-117 (168)
20 2b5u_A Colicin E3; high resolu 67.2 1E+02 0.0035 33.1 14.6 50 156-206 383-432 (551)
21 2dfs_A Myosin-5A; myosin-V, in 65.3 58 0.002 37.4 13.2 71 82-161 1004-1077(1080)
22 3ol1_A Vimentin; structural ge 64.7 67 0.0023 27.5 15.3 88 39-151 16-103 (119)
23 2fxo_A Myosin heavy chain, car 64.6 69 0.0024 27.6 13.8 42 38-79 22-63 (129)
24 3tnu_B Keratin, type II cytosk 63.7 71 0.0024 27.4 11.1 63 36-99 29-91 (129)
25 2e7s_A RAB guanine nucleotide 58.3 59 0.002 29.2 9.4 91 35-125 17-117 (135)
26 1c1g_A Tropomyosin; contractIl 57.1 97 0.0033 26.9 24.1 28 40-67 10-37 (284)
27 3i00_A HIP-I, huntingtin-inter 57.0 76 0.0026 27.7 9.7 66 36-123 15-80 (120)
28 4ani_A Protein GRPE; chaperone 52.2 1.6E+02 0.0055 27.9 12.1 66 36-101 59-124 (213)
29 3o0z_A RHO-associated protein 50.6 1.6E+02 0.0054 27.3 16.7 85 39-123 44-130 (168)
30 3a7p_A Autophagy protein 16; c 48.3 1.6E+02 0.0056 26.9 12.6 77 37-122 59-135 (152)
31 3u06_A Protein claret segregat 47.0 35 0.0012 35.0 6.9 32 39-70 6-37 (412)
32 1cii_A Colicin IA; bacteriocin 47.0 1.6E+02 0.0055 31.7 11.8 26 73-98 388-413 (602)
33 3ol1_A Vimentin; structural ge 46.6 1.4E+02 0.0047 25.5 14.7 87 36-127 20-106 (119)
34 3i00_A HIP-I, huntingtin-inter 43.6 90 0.0031 27.2 8.0 20 116-135 52-71 (120)
35 3mq9_A Bone marrow stromal ant 43.5 37 0.0012 34.0 6.3 43 36-78 397-439 (471)
36 1ic2_A Tropomyosin alpha chain 42.3 1.3E+02 0.0044 24.0 9.0 26 38-63 8-33 (81)
37 1k1f_A Breakpoint cluster regi 41.9 41 0.0014 27.2 5.1 53 27-79 15-69 (72)
38 4e61_A Protein BIM1; EB1-like 41.3 44 0.0015 29.0 5.6 34 36-69 4-37 (106)
39 3na7_A HP0958; flagellar bioge 38.0 2.6E+02 0.0089 26.2 20.5 16 209-224 172-187 (256)
40 4etp_A Kinesin-like protein KA 37.6 75 0.0026 32.3 7.6 28 38-65 5-32 (403)
41 3hnw_A Uncharacterized protein 36.2 2.3E+02 0.0077 25.0 10.9 43 34-76 57-101 (138)
42 3hnw_A Uncharacterized protein 35.8 49 0.0017 29.3 5.2 35 39-73 71-105 (138)
43 1m1j_B Fibrinogen beta chain; 35.2 2E+02 0.0068 30.3 10.5 37 37-73 122-158 (464)
44 3vkg_A Dynein heavy chain, cyt 35.1 8.8E+02 0.03 31.6 22.1 35 44-78 1928-1969(3245)
45 3mq7_A Bone marrow stromal ant 35.0 2.4E+02 0.0082 25.0 10.8 68 39-124 28-95 (121)
46 2v4h_A NF-kappa-B essential mo 34.2 2.4E+02 0.0081 24.6 9.5 62 65-144 25-88 (110)
47 2i1j_A Moesin; FERM, coiled-co 32.7 67 0.0023 34.2 6.5 79 57-147 293-372 (575)
48 2v71_A Nuclear distribution pr 31.5 3.3E+02 0.011 25.5 16.2 11 137-147 122-132 (189)
49 3ghg_A Fibrinogen alpha chain; 31.2 1.9E+02 0.0065 31.3 9.5 66 60-133 77-142 (562)
50 2d1l_A Metastasis suppressor p 31.2 3.7E+02 0.013 26.0 12.4 13 14-26 74-86 (253)
51 3cl3_D NF-kappa-B essential mo 31.0 1.5E+02 0.0051 26.5 7.4 96 38-140 4-105 (130)
52 2yy0_A C-MYC-binding protein; 29.5 65 0.0022 24.4 4.2 34 33-66 16-49 (53)
53 3l4f_A RHO guanine nucleotide 28.1 89 0.003 24.7 4.8 24 97-120 28-51 (61)
54 2b5u_A Colicin E3; high resolu 28.0 5.8E+02 0.02 27.6 12.4 83 29-132 342-430 (551)
55 3ghg_A Fibrinogen alpha chain; 26.6 6.5E+02 0.022 27.3 15.0 36 171-206 123-162 (562)
56 2efk_A CDC42-interacting prote 26.5 3.8E+02 0.013 24.7 15.3 47 52-99 100-146 (301)
57 2j69_A Bacterial dynamin-like 26.3 6.3E+02 0.022 27.1 12.8 33 173-205 619-652 (695)
58 3f1i_H Hepatocyte growth facto 25.2 3.2E+02 0.011 23.4 10.2 82 18-110 13-97 (98)
59 3vkg_A Dynein heavy chain, cyt 25.0 1.3E+03 0.043 30.2 20.3 7 428-434 2283-2289(3245)
60 1s1c_X RHO-associated, coiled- 24.9 2.6E+02 0.0088 22.6 7.1 25 85-109 34-58 (71)
61 4dk0_A Putative MACA; alpha-ha 23.8 2.7E+02 0.0093 26.4 8.5 32 38-69 72-103 (369)
62 3m91_A Proteasome-associated A 22.7 1.7E+02 0.0058 22.2 5.4 28 109-136 21-48 (51)
63 3iyk_A VP5; icosahedral virus; 21.6 7.8E+02 0.027 26.5 14.2 60 88-147 95-154 (526)
64 2jee_A YIIU; FTSZ, septum, coi 21.2 3.5E+02 0.012 22.3 8.2 56 34-93 18-76 (81)
65 3ni0_A Bone marrow stromal ant 20.9 4E+02 0.014 22.8 8.7 41 39-79 21-61 (99)
No 1
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.60 E-value=0.037 Score=50.69 Aligned_cols=89 Identities=16% Similarity=0.230 Sum_probs=68.9
Q ss_pred hHHHHHhhhccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHH
Q 045851 15 AREAYCLYNHVK-LLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVD 93 (473)
Q Consensus 15 s~ellkvlnriw-leEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~ 93 (473)
|+.|...+|+.= |+|. +..++.+|..++.+|+.|+..+. +++.|... + .-+.+-+.
T Consensus 5 StKLI~Ain~qs~LeD~-------L~~~R~el~~~~~ri~~lE~~r~----~~~~l~~~----~--------~~~~~e~~ 61 (154)
T 2ocy_A 5 STQLIESVDKQSHLEEQ-------LNKSLKTIASQKAAIENYNQLKE----DYNTLKRE----L--------SDRDDEVK 61 (154)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTHHHHH----HHHHHHTH----H--------HHHHHHHH
T ss_pred HHHHHHHHHhhccHHHH-------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH----H--------hhhhHHHH
Confidence 457888888865 6665 78889999999999999987664 33333222 1 23666777
Q ss_pred HHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHH
Q 045851 94 ELKDELSKERKSRKQIDFLNSKFVNELAKAESS 126 (473)
Q Consensus 94 slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss 126 (473)
.|.++|..|+..|..+|.-..++-.||.+.-.|
T Consensus 62 ~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTas 94 (154)
T 2ocy_A 62 RLREDIAKENELRTKAEEEADKLNKEVEDLTAS 94 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999997654
No 2
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.04 E-value=0.22 Score=42.66 Aligned_cols=79 Identities=15% Similarity=0.248 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHH
Q 045851 41 LQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNEL 120 (473)
Q Consensus 41 Lk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~EL 120 (473)
|..+|..+|.+|++|+.+......++.. |..+|..||..|..+|.-..++-.||
T Consensus 3 ~~~~~e~lre~l~~le~~~~~~~~e~~~--------------------------L~~~l~eE~~~R~~aE~~~~~ie~El 56 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSDRDDEVKR--------------------------LREDIAKENELRTKAEEEADKLNKEV 56 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899998888766654444433 45566666666666666666666666
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHH
Q 045851 121 AKAESS-AKQFMQYYEEEKRARQLLE 145 (473)
Q Consensus 121 aE~Kss-~~~~lkelE~ErkaRellE 145 (473)
.+.-.| |..|=+=.-.+|+.|..+|
T Consensus 57 EeLTasLFeEAN~MVa~ar~e~~~~e 82 (97)
T 2eqb_B 57 EDLTASLFDEANNMVADARKEKYAIE 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665443 3333333334444444443
No 3
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.49 E-value=0.87 Score=40.99 Aligned_cols=73 Identities=18% Similarity=0.301 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHH
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFV 117 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 117 (473)
+..++.+|...+++|++|+..+. +++.|.+.+ ..+..-+..+..+|..||..|..+|.-..++-
T Consensus 10 L~~~r~~l~~~~~~~~~le~l~~----~l~~l~~~l------------~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie 73 (135)
T 2e7s_A 10 LNKSLKTIASQKAAIENYNQLKE----DYNTLKREL------------SDRDDEVKRLREDIAKENELRTKAEEEADKLN 73 (135)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHT------------TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888888877655 344444333 23445566789999999999999999999999
Q ss_pred HHHHHHHHH
Q 045851 118 NELAKAESS 126 (473)
Q Consensus 118 ~ELaE~Kss 126 (473)
.||.+.-.+
T Consensus 74 ~ElE~LTas 82 (135)
T 2e7s_A 74 KEVEDLTAS 82 (135)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999997554
No 4
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.05 E-value=2.7 Score=35.11 Aligned_cols=74 Identities=19% Similarity=0.277 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchh-------hHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh---
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKK-------KYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRK--- 107 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~-------eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rk--- 107 (473)
+.+|+.|.+.|..++.++++..+.... +|..|-|++.- =--+.|++...+......|+...+.+.
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~-----lE~eld~~~e~l~~a~~kLe~~ek~~~~AE 85 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKG-----TEDEVEKYSESVKEAQEKLEQAEKKATDAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999998888888776554433 34444443320 011456777788888888888888888
Q ss_pred -hhhHHhHHH
Q 045851 108 -QIDFLNSKF 116 (473)
Q Consensus 108 -r~E~ln~KL 116 (473)
.+.+||||+
T Consensus 86 ~evasLnRri 95 (101)
T 3u59_A 86 AEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 555677765
No 5
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.32 E-value=2.9 Score=35.73 Aligned_cols=79 Identities=16% Similarity=0.326 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHH--HHHHHHHHHHHH--------HHHHHHhhh
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHY--KMEAIVDELKDE--------LSKERKSRK 107 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~e--ki~a~i~slk~E--------Le~ERk~Rk 107 (473)
...|+.+|.++..+......|......+ |.+|+..+..-|.. +|..-|.+|-.- ...+|+.|-
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~-------l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~ 79 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLRED-------IAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKY 79 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888887777777665 34444443332222 222223222222 245688888
Q ss_pred hhhHHhHHHHHHHHHH
Q 045851 108 QIDFLNSKFVNELAKA 123 (473)
Q Consensus 108 r~E~ln~KL~~ELaE~ 123 (473)
.+|.-|.+|...|.|.
T Consensus 80 ~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 80 AIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 8888888888888764
No 6
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.87 E-value=4.6 Score=33.94 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhch-------hhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh---
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSK-------KKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRK--- 107 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~-------~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rk--- 107 (473)
+.+|+.|.+.|..++.+++...+... .+|..|-+++.- =--+-|++...+...+..|+...+.+-
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~-----lE~eld~~ee~L~ea~~kLee~ek~~~~aE 85 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRV-----TEDSRDQVLEELHKSEDSLLFAEENAAKAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999988888888776544432 344444443320 011457788888888888888888888
Q ss_pred -hhhHHhHHH
Q 045851 108 -QIDFLNSKF 116 (473)
Q Consensus 108 -r~E~ln~KL 116 (473)
.+.+||||+
T Consensus 86 ~ev~~L~Rri 95 (101)
T 3u1c_A 86 SEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 666677775
No 7
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1
Probab=89.33 E-value=0.07 Score=46.03 Aligned_cols=38 Identities=39% Similarity=0.454 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHH
Q 045851 91 IVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAK 128 (473)
Q Consensus 91 ~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~ 128 (473)
.|+.+..||..|+-+||++|-+|.-|++||+.+|..+-
T Consensus 64 q~~~laqels~eklarkqleeln~~Lg~Els~iKl~lL 101 (110)
T 2hg7_A 64 QVELLAQELSQEKLARKQLEELNKTLGNELSDIKLSLL 101 (110)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999999998764
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.89 E-value=5.8 Score=40.68 Aligned_cols=22 Identities=5% Similarity=0.063 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCcc
Q 045851 190 SQINKLVEELENFLMSNAATLD 211 (473)
Q Consensus 190 s~ldkL~~elE~FL~sk~~~~d 211 (473)
..+..+..+|...+..-+.+.|
T Consensus 565 ~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 565 QETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHhcCCCc
Confidence 3455555555555554333333
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=84.67 E-value=11 Score=43.11 Aligned_cols=7 Identities=14% Similarity=0.041 Sum_probs=2.8
Q ss_pred HHHhhhh
Q 045851 162 MLQLAEI 168 (473)
Q Consensus 162 MLqmAEv 168 (473)
++..++-
T Consensus 1046 ~~~~~~~ 1052 (1080)
T 2dfs_A 1046 IHDQAKE 1052 (1080)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 10
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=82.60 E-value=4.6 Score=31.51 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=17.2
Q ss_pred HHHHHHHhhhhhhHHhHHHH
Q 045851 98 ELSKERKSRKQIDFLNSKFV 117 (473)
Q Consensus 98 ELe~ERk~Rkr~E~ln~KL~ 117 (473)
=||.|.|+|+++|.+=+|+.
T Consensus 32 ~lEeEqkARk~LE~~vrk~~ 51 (56)
T 2w6b_A 32 SLEEEQRARKDLEKLVRKVL 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 48889999999999988884
No 11
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=81.27 E-value=25 Score=32.18 Aligned_cols=86 Identities=17% Similarity=0.276 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHH--HHHHHHHHHHHHH--------HHHHHhhhhhhHH
Q 045851 43 AELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHY--KMEAIVDELKDEL--------SKERKSRKQIDFL 112 (473)
Q Consensus 43 ~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~e--ki~a~i~slk~EL--------e~ERk~Rkr~E~l 112 (473)
..|+.++.++.+|..+......++..|+..+++|+..+..-|+. +|..-|.+|-.-| ..+|+.|-.+|.-
T Consensus 37 ~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r 116 (154)
T 2ocy_A 37 ENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEIL 116 (154)
T ss_dssp HTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888888888889999999999999988765443 3444444443333 3579999999999
Q ss_pred hHHHHHHHHHHHHHHH
Q 045851 113 NSKFVNELAKAESSAK 128 (473)
Q Consensus 113 n~KL~~ELaE~Kss~~ 128 (473)
|.+|...|.+...-+.
T Consensus 117 ~~~L~~ql~e~~~~l~ 132 (154)
T 2ocy_A 117 NKRLTEQLREKDTLLD 132 (154)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998766444
No 12
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.79 E-value=17 Score=36.59 Aligned_cols=54 Identities=11% Similarity=0.021 Sum_probs=33.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHH
Q 045851 78 NSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFM 131 (473)
Q Consensus 78 ~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~l 131 (473)
.+..-+|+++++.....++++.+..|+...|++.+...+...+++++.-+..|.
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 333444566666666666666666666666666666677666666666555554
No 13
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=76.79 E-value=6.7 Score=44.88 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhHHHHHHHH
Q 045851 43 AELVQARLRIHELEDEHRSSKKKYENLVRKL 73 (473)
Q Consensus 43 ~EL~~Ar~rI~eL~~E~~s~~~eie~L~Kql 73 (473)
..|......+.+|+.+....+.+++.+..++
T Consensus 871 ~~L~~le~~l~ele~~l~~Le~e~~~l~~~L 901 (1184)
T 1i84_S 871 ERQQKAEAELKELEQKHTQLCEEKNLLQEKL 901 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444333333334444333333
No 14
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=73.20 E-value=6.7 Score=30.57 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045851 116 FVNELAKAESSAKQFMQYYEEEKRARQLLEES 147 (473)
Q Consensus 116 L~~ELaE~Kss~~~~lkelE~ErkaRellE~v 147 (473)
|..|+.+.+.-+++.-+-||.|.|||.-||.+
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~ 46 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKL 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666677778899999999999987
No 15
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=72.82 E-value=65 Score=30.43 Aligned_cols=36 Identities=8% Similarity=0.072 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHH
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKL 73 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~Kql 73 (473)
+..|+..+..++..|.++..+......+|+.+-.++
T Consensus 41 ~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri 76 (256)
T 3na7_A 41 KEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKI 76 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555554444444444444
No 16
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=72.06 E-value=19 Score=41.27 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHH
Q 045851 37 FVSALQAELVQARLRIHELEDEHRSSKKKYENL 69 (473)
Q Consensus 37 lv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L 69 (473)
-+..|+.+|...+..+..++......+.+++.|
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~L 890 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQL 890 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666655544444443333
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=71.01 E-value=96 Score=31.66 Aligned_cols=95 Identities=13% Similarity=0.182 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhh------hHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 045851 39 SALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVR------KHYKMEAIVDELKDELSKERKSRKQIDFL 112 (473)
Q Consensus 39 ~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKsk------E~eki~a~i~slk~ELe~ERk~Rkr~E~l 112 (473)
..|+.|+.+-+..|+.|+.+.......+..+-.++.+.+..+... ..+++...++ +++..
T Consensus 452 e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~ 517 (597)
T 3oja_B 452 EQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFT--------------HLKER 517 (597)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHH--------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHH--------------HHHhh
Confidence 345566666677777777776666665555555554444433311 1122222222 23334
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045851 113 NSKFVNELAKAESSAKQFMQYYEEEKRARQLLEES 147 (473)
Q Consensus 113 n~KL~~ELaE~Kss~~~~lkelE~ErkaRellE~v 147 (473)
+.++.+++...+.++.+-.++|+.-++.++-||..
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 552 (597)
T 3oja_B 518 QAFKLRETQARRTEADAKQKETEDLEQENIALEKQ 552 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHH
Confidence 45555555555666655566666555555555554
No 18
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=67.58 E-value=45 Score=28.80 Aligned_cols=63 Identities=19% Similarity=0.315 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHH
Q 045851 36 SFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDEL 99 (473)
Q Consensus 36 Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~EL 99 (473)
..+.+.++|+-..|..|+.|..|-.+.+.....|-..|++= ..+-..+...+.+.|..+..+|
T Consensus 31 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~-e~~~~~~l~~~q~~i~~lE~eL 93 (131)
T 3tnu_A 31 ELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEET-KGRYCMQLAQIQEMIGSVEEQL 93 (131)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34677889999999999999999888887777777777543 3344445555666666655555
No 19
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=67.54 E-value=79 Score=29.31 Aligned_cols=90 Identities=21% Similarity=0.242 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhH-----
Q 045851 40 ALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNS----- 114 (473)
Q Consensus 40 aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~----- 114 (473)
-|++|-+-| ++.+...+|-+......+..++-| -++..-=-...+.+..-+..|...|+.||+.|.+..-+..
T Consensus 21 kLk~EsE~~-~rlkK~~tEl~k~~~~~E~~~rEL-q~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~r 98 (168)
T 3o0z_A 21 LLRTESDTA-VRLRKSHTEMSKSISQLESLNREL-QERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQAR 98 (168)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444422 344444444444444444444444 2444444445566777778888888888888887766333
Q ss_pred --HHHHHHHHHHHHHHHHH
Q 045851 115 --KFVNELAKAESSAKQFM 131 (473)
Q Consensus 115 --KL~~ELaE~Kss~~~~l 131 (473)
-|--||..+|....++.
T Consensus 99 i~~L~~El~~~k~~~~k~~ 117 (168)
T 3o0z_A 99 ITSLQEEVKHLKHNLEKVE 117 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 34556666666555543
No 20
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=67.22 E-value=1e+02 Score=33.14 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=31.3
Q ss_pred HHHhHHHHHhhhhhhhhhhhhhHhhhhhhhhhhhHHHHHHHHHHHHHHhhh
Q 045851 156 VEEERNMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSN 206 (473)
Q Consensus 156 ~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~FL~sk 206 (473)
++-..+|-||+- |--.|-|-+|--++.+|..=....+.--++|-.-|..|
T Consensus 383 ~~~Gh~~w~~~~-~~~~~~~~dv~~~~a~~d~~~~~~s~~~~~ls~~me~R 432 (551)
T 2b5u_A 383 MAGGHRMWQMAG-LKAQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESR 432 (551)
T ss_dssp TSTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhhhhcc-chhhhhhhhhhhHHHHHHHHhhcccchhhhhhhhhhcc
Confidence 455689999987 87777777766666555553334455555555555543
No 21
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=65.29 E-value=58 Score=37.39 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhHhhhhHHH
Q 045851 82 VRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEE---SKTMRIREEVEE 158 (473)
Q Consensus 82 skE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaRellE~---ves~k~reE~ee 158 (473)
.||.+.+...++.++++|+ ..-..++..|.+|-..+.+...-+.. .+.+-.+-+.. -+...+..|+++
T Consensus 1004 ~ke~~~lee~~~~~~~~L~---~kv~~L~~e~~~L~qq~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 1074 (1080)
T 2dfs_A 1004 QTEKKTIEEWADKYKHETE---QLVSELKEQNTLLKTEKEELNRRIHD------QAKEITETMEKKLVEETKQLELDLND 1074 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666665 23345556666666655555432221 11110011111 245567778888
Q ss_pred hHH
Q 045851 159 ERN 161 (473)
Q Consensus 159 ER~ 161 (473)
||.
T Consensus 1075 ~~~ 1077 (1080)
T 2dfs_A 1075 ERL 1077 (1080)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 22
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=64.69 E-value=67 Score=27.51 Aligned_cols=88 Identities=15% Similarity=0.274 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHH
Q 045851 39 SALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVN 118 (473)
Q Consensus 39 ~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ 118 (473)
+....++...|.+|..+..++-...-++ +.++.+++++|...+.|...|..+|.--..|-+
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~lel-------------------dn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK 76 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVER-------------------DNLAEDIMRLREKLQEEMLQREEAENTLQSFRQ 76 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence 4456677777888877776665443332 445566677777777787777777765444544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 045851 119 ELAKAESSAKQFMQYYEEEKRARQLLEESKTMR 151 (473)
Q Consensus 119 ELaE~Kss~~~~lkelE~ErkaRellE~ves~k 151 (473)
.|-++- +.-.+-|.+---|.|++..+|
T Consensus 77 ~lD~~~------l~r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 77 DVDNAS------LARLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 444331 222334455555666664443
No 23
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=64.61 E-value=69 Score=27.60 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhh
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNS 79 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~ 79 (473)
+..|+.-|.......++|+......-.+...|..+|..|+..
T Consensus 22 l~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~ 63 (129)
T 2fxo_A 22 FTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDN 63 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666677777767777777777777655543
No 24
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.65 E-value=71 Score=27.42 Aligned_cols=63 Identities=17% Similarity=0.161 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHH
Q 045851 36 SFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDEL 99 (473)
Q Consensus 36 Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~EL 99 (473)
..+.+-++|+-..|..|+.|..|-.+.+.....|-..|++=. .+-..+...+.+.|..+..+|
T Consensus 29 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e-~~~~~~l~~~q~~i~~lE~eL 91 (129)
T 3tnu_B 29 DDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAE-QRGELALKDARNKLAELEEAL 91 (129)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhH
Confidence 346677899999999999999999888888888888886543 344445555666666665555
No 25
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.27 E-value=59 Score=29.17 Aligned_cols=91 Identities=15% Similarity=0.221 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHH--HHHHHHHHHHHH--------HHHHH
Q 045851 35 FSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYK--MEAIVDELKDEL--------SKERK 104 (473)
Q Consensus 35 ~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~ek--i~a~i~slk~EL--------e~ERk 104 (473)
++-.++=-.+|...+.+.++|..+......++..|...+++|+..+..-|.++ |..-|.+|-.-| ..+|+
T Consensus 17 l~~~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~ 96 (135)
T 2e7s_A 17 IASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARM 96 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556778888888888888877777899999999999999887766543 333344443333 34577
Q ss_pred hhhhhhHHhHHHHHHHHHHHH
Q 045851 105 SRKQIDFLNSKFVNELAKAES 125 (473)
Q Consensus 105 ~Rkr~E~ln~KL~~ELaE~Ks 125 (473)
.|-.+|.-|.+|...|.+...
T Consensus 97 ~~~~~e~r~~~L~~ql~e~e~ 117 (135)
T 2e7s_A 97 EKYAIEILNKRLTEQLREKDM 117 (135)
T ss_dssp HHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776544
No 26
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=57.06 E-value=97 Score=26.85 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhHH
Q 045851 40 ALQAELVQARLRIHELEDEHRSSKKKYE 67 (473)
Q Consensus 40 aLk~EL~~Ar~rI~eL~~E~~s~~~eie 67 (473)
+|+.+++.+...+.+|..+....+.+++
T Consensus 10 ~l~~~~~~~~~~~~~l~~~l~~l~~~~~ 37 (284)
T 1c1g_A 10 MLKLDKENALDRADEAEADKKAAEDRSK 37 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433333333
No 27
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=57.05 E-value=76 Score=27.68 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 045851 36 SFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSK 115 (473)
Q Consensus 36 Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 115 (473)
.+|-.|+.|++.-+..+..|..|.+..-..+. ..|-.|..||+.=|+.++.+-.-|..
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~----------------------~~i~~Le~eL~e~r~~~q~a~~e~e~ 72 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVLQLK----------------------GHVSELEADLAEQQHLRQQAADDCEF 72 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999888775543332 33344555666666666666666666
Q ss_pred HHHHHHHH
Q 045851 116 FVNELAKA 123 (473)
Q Consensus 116 L~~ELaE~ 123 (473)
|-.|+.+.
T Consensus 73 Lr~e~~~l 80 (120)
T 3i00_A 73 LRAELDEL 80 (120)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
No 28
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=52.20 E-value=1.6e+02 Score=27.94 Aligned_cols=66 Identities=15% Similarity=0.219 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHH
Q 045851 36 SFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSK 101 (473)
Q Consensus 36 Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ 101 (473)
.-+..|..+|...+.++.+|...-.+...+++.+.|+...|+...+.--.+++-..|-.+-+-|+.
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnler 124 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFER 124 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346789999999999999999998899999999999999998887777777766666666666653
No 29
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=50.60 E-value=1.6e+02 Score=27.33 Aligned_cols=85 Identities=18% Similarity=0.197 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhH--HHHHHHHHHHHHHHHHHHHhhhhhhHHhHHH
Q 045851 39 SALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKH--YKMEAIVDELKDELSKERKSRKQIDFLNSKF 116 (473)
Q Consensus 39 ~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~--eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL 116 (473)
+++..-+.--+.++..|...+-...+++-.|--+|..||..|.-... --...-|.+|..||+.=|-.-.+++.-|++|
T Consensus 44 ~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L 123 (168)
T 3o0z_A 44 SQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEA 123 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444456778888888888999999999999999998876544 2244578999999999888888899999998
Q ss_pred HHHHHHH
Q 045851 117 VNELAKA 123 (473)
Q Consensus 117 ~~ELaE~ 123 (473)
..-|+..
T Consensus 124 ~Ekl~~l 130 (168)
T 3o0z_A 124 QDMLNHS 130 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766653
No 30
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=48.28 E-value=1.6e+02 Score=26.87 Aligned_cols=77 Identities=17% Similarity=0.113 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHH
Q 045851 37 FVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKF 116 (473)
Q Consensus 37 lv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL 116 (473)
+|+.+++++ ..|..|..|....+.+|..|---+ .=|+|--+.+++.+.+++-++..=-.-.++++.-|..|
T Consensus 59 ~vs~~~~~~----~~I~~L~~El~~l~~ki~dLeeel-----~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 59 IVSHDDALL----NTLAILQKELKSKEQEIRRLKEVI-----ALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHH----HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666654 377888888777777765553333 33566677788888888888876666667777778777
Q ss_pred HHHHHH
Q 045851 117 VNELAK 122 (473)
Q Consensus 117 ~~ELaE 122 (473)
+.=+-.
T Consensus 130 V~RWM~ 135 (152)
T 3a7p_A 130 VARWLK 135 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 654443
No 31
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=47.05 E-value=35 Score=35.03 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHH
Q 045851 39 SALQAELVQARLRIHELEDEHRSSKKKYENLV 70 (473)
Q Consensus 39 ~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~ 70 (473)
..|..||...+.++++|+++.+..+.+++.+-
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~ 37 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCK 37 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999888888888877666555544443
No 32
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=47.03 E-value=1.6e+02 Score=31.67 Aligned_cols=26 Identities=0% Similarity=0.093 Sum_probs=13.7
Q ss_pred HHHhHhhhhhhhHHHHHHHHHHHHHH
Q 045851 73 LREERNSWYVRKHYKMEAIVDELKDE 98 (473)
Q Consensus 73 laEEK~~wKskE~eki~a~i~slk~E 98 (473)
-+++.+.-+-+|...++.++-.++..
T Consensus 388 ~A~d~l~a~~kek~~~~n~~a~~~~K 413 (602)
T 1cii_A 388 HANDALNALLKEKENIRNQLSGINQK 413 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 34444444445555566666555555
No 33
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=46.61 E-value=1.4e+02 Score=25.54 Aligned_cols=87 Identities=15% Similarity=0.134 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 045851 36 SFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSK 115 (473)
Q Consensus 36 Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 115 (473)
+-|..|+..|+.+...--.|+.+....+-.++.|-.++.+|...+. .+.+-|..+|..++++-=.|--+|.-=.-
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~-----~~E~di~~lrK~lD~~~l~r~dLE~~ies 94 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQRE-----EAENTLQSFRQDVDNASLARLDLERKVES 94 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----HHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 4588899999888888888888889999999999999988876544 45667888888888887777666666666
Q ss_pred HHHHHHHHHHHH
Q 045851 116 FVNELAKAESSA 127 (473)
Q Consensus 116 L~~ELaE~Kss~ 127 (473)
|..||.=.|.-.
T Consensus 95 L~eEl~FLKk~h 106 (119)
T 3ol1_A 95 LQEEIAFLKKLH 106 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666554433
No 34
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=43.64 E-value=90 Score=27.21 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045851 116 FVNELAKAESSAKQFMQYYE 135 (473)
Q Consensus 116 L~~ELaE~Kss~~~~lkelE 135 (473)
|-.||++.+.-..+|+-|.+
T Consensus 52 Le~eL~e~r~~~q~a~~e~e 71 (120)
T 3i00_A 52 LEADLAEQQHLRQQAADDCE 71 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 35
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=43.52 E-value=37 Score=34.03 Aligned_cols=43 Identities=21% Similarity=0.327 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh
Q 045851 36 SFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERN 78 (473)
Q Consensus 36 Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~ 78 (473)
.....|+..|+.+|.-..++++.--+..+.+=-|+.-|.-++.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKA 439 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHH
Confidence 4467788888888888888777666666776666666644443
No 36
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=42.32 E-value=1.3e+02 Score=23.95 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhch
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSK 63 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~ 63 (473)
+.+|+.|++.|..++.++++..+...
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e 33 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAE 33 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999888877665443
No 37
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=41.93 E-value=41 Score=27.24 Aligned_cols=53 Identities=23% Similarity=0.334 Sum_probs=39.8
Q ss_pred ccccccchhhH--HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhh
Q 045851 27 LLEDQVTTFSF--VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNS 79 (473)
Q Consensus 27 leEq~~s~~Sl--v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~ 79 (473)
+-++++..|.+ |--+..||+.+|+.|+.|++|--..+-.+=+|---||-||.+
T Consensus 15 fp~~epp~m~l~~vgdiEqeLe~Ck~sIrrLE~evn~ErFrmIYLQTlLAkerks 69 (72)
T 1k1f_A 15 FPDSEPPRMELRSVGDIEQELERAKASIRRLEQEVNQERFRMIYLQTLLAKEKKS 69 (72)
T ss_dssp CTTSCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred CCCCCCcHhHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 44555544432 677899999999999999999888887788888878777654
No 38
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=41.31 E-value=44 Score=28.95 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHH
Q 045851 36 SFVSALQAELVQARLRIHELEDEHRSSKKKYENL 69 (473)
Q Consensus 36 Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L 69 (473)
+-+.||+.||.+++.+|.+|.++-...+-.++.|
T Consensus 4 ~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~l 37 (106)
T 4e61_A 4 GSLVAIQAELTKSQETIGSLNEEIEQYKGTVSTL 37 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4478999999999999999988877666665554
No 39
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=37.98 E-value=2.6e+02 Score=26.24 Aligned_cols=16 Identities=19% Similarity=-0.083 Sum_probs=8.4
Q ss_pred CcchHHHHHHHHHHHH
Q 045851 209 TLDVMALRKAELIIRA 224 (473)
Q Consensus 209 ~~d~~~~r~ae~~rqs 224 (473)
..+...+..=+.+|..
T Consensus 172 ~i~~~lL~~Yerir~~ 187 (256)
T 3na7_A 172 KTEPKIYSFYERIRRW 187 (256)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 4555555555555543
No 40
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.58 E-value=75 Score=32.34 Aligned_cols=28 Identities=14% Similarity=0.361 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhh
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKK 65 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~e 65 (473)
|.+|+.||...+.++.+|+++....+.+
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 32 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELG 32 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666665555555555444433333
No 41
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=36.17 E-value=2.3e+02 Score=25.01 Aligned_cols=43 Identities=14% Similarity=0.087 Sum_probs=31.4
Q ss_pred hhhHHHHH--HHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHh
Q 045851 34 TFSFVSAL--QAELVQARLRIHELEDEHRSSKKKYENLVRKLREE 76 (473)
Q Consensus 34 ~~Slv~aL--k~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEE 76 (473)
.++++.|| --||-.++.++.+|+++-....+++..|-.++..-
T Consensus 57 r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~ 101 (138)
T 3hnw_A 57 LRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAA 101 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554 46888999999988888887777777777666544
No 42
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=35.84 E-value=49 Score=29.30 Aligned_cols=35 Identities=14% Similarity=-0.032 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHH
Q 045851 39 SALQAELVQARLRIHELEDEHRSSKKKYENLVRKL 73 (473)
Q Consensus 39 ~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~Kql 73 (473)
--++.+.+..+.+|.++..|-.+.++++..+--++
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~ 105 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKA 105 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666665554444
No 43
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=35.21 E-value=2e+02 Score=30.32 Aligned_cols=37 Identities=11% Similarity=0.133 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHH
Q 045851 37 FVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKL 73 (473)
Q Consensus 37 lv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~Kql 73 (473)
+|.+|+..|.+.+.+|.+++.--+.+..+|+...+.+
T Consensus 122 ~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 122 YVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYI 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Confidence 5566666666666666665554444444444444333
No 44
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=35.08 E-value=8.8e+02 Score=31.58 Aligned_cols=35 Identities=6% Similarity=0.257 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhhhc-------hhhHHHHHHHHHHhHh
Q 045851 44 ELVQARLRIHELEDEHRSS-------KKKYENLVRKLREERN 78 (473)
Q Consensus 44 EL~~Ar~rI~eL~~E~~s~-------~~eie~L~KqlaEEK~ 78 (473)
-|..|..+|.+|..+-... .++.+.+|.++..++.
T Consensus 1928 KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~ 1969 (3245)
T 3vkg_A 1928 KLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQ 1969 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555665555443333 3345566666665543
No 45
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=34.97 E-value=2.4e+02 Score=24.96 Aligned_cols=68 Identities=28% Similarity=0.371 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHH
Q 045851 39 SALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVN 118 (473)
Q Consensus 39 ~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ 118 (473)
.-|+.+|-+|+.-.++-+++--+-.+.+..|+.-|.+||+.- ..-|+.+++| +..||.+|-+
T Consensus 28 ~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~--------q~~vqeLqgE----------I~~Lnq~Lq~ 89 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG--------QKKVEELEGE----------ITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH----------HHHHHHHHHH
Confidence 568889999998888888877777889999999998887633 1224444444 3457777765
Q ss_pred HHHHHH
Q 045851 119 ELAKAE 124 (473)
Q Consensus 119 ELaE~K 124 (473)
-+++++
T Consensus 90 a~ae~e 95 (121)
T 3mq7_A 90 ASAEVE 95 (121)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 46
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=34.16 E-value=2.4e+02 Score=24.63 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=0.0
Q ss_pred hHHHHHHHH--HHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045851 65 KYENLVRKL--REERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQ 142 (473)
Q Consensus 65 eie~L~Kql--aEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaRe 142 (473)
+|++|.-+| +||.++-|-.+-++++.-|...+..||. +.=.+.-+.=+..|.+.||.+|+
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~------------------I~vLkaQv~IY~~DF~aERadRE 86 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMET------------------VPVLKAQADIYKADFQAERHARE 86 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHccchhhHH
Q ss_pred HH
Q 045851 143 LL 144 (473)
Q Consensus 143 ll 144 (473)
-+
T Consensus 87 kl 88 (110)
T 2v4h_A 87 KL 88 (110)
T ss_dssp HH
T ss_pred HH
No 47
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=32.70 E-value=67 Score=34.18 Aligned_cols=79 Identities=13% Similarity=0.159 Sum_probs=46.2
Q ss_pred HHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 045851 57 DEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEE 136 (473)
Q Consensus 57 ~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lkelE~ 136 (473)
..++..--+|..+-.|-.|||.. |-.|+. -|..||++|..+|.--.-|-.-|...+..+.++..+|.+
T Consensus 293 ~~r~~d~~e~qqm~~~a~e~~~~-~~~e~~-----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (575)
T 2i1j_A 293 RRRKPDTIDVQQMKAQAREEKLA-KQAQRE-----------KLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLE 360 (575)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHH-HHHHHT-----------TCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCcHHHHHHHHHHHHHHHH-HHHHHH-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556777766666666653 333444 355688888888877777777777777777777776654
Q ss_pred -HHHHHHHHHHh
Q 045851 137 -EKRARQLLEES 147 (473)
Q Consensus 137 -ErkaRellE~v 147 (473)
|.+++.|-|++
T Consensus 361 ~~~~~~~l~e~~ 372 (575)
T 2i1j_A 361 AQDMILRLEEQL 372 (575)
T ss_dssp HHHC--------
T ss_pred hHHHHHHHHHHH
Confidence 45555555555
No 48
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=31.52 E-value=3.3e+02 Score=25.50 Aligned_cols=11 Identities=18% Similarity=0.226 Sum_probs=6.5
Q ss_pred HHHHHHHHHHh
Q 045851 137 EKRARQLLEES 147 (473)
Q Consensus 137 ErkaRellE~v 147 (473)
||+.|.+..-+
T Consensus 122 Er~~R~~~~Sl 132 (189)
T 2v71_A 122 ERAKRATIMSL 132 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhH
Confidence 56666665555
No 49
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=31.24 E-value=1.9e+02 Score=31.30 Aligned_cols=66 Identities=14% Similarity=0.160 Sum_probs=38.8
Q ss_pred hhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 045851 60 RSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQY 133 (473)
Q Consensus 60 ~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lke 133 (473)
+.+.++++.+++++-+. |+.+.. ...-.+....|+..| ||++.+.|..++-.-| ....+|.+.|.+
T Consensus 77 sKnsKdseqy~k~~~E~---Lr~rq~--q~~dNdNtynE~S~E--LRRrIqyLKekVdnQl-snIrvLQsnLed 142 (562)
T 3ghg_A 77 QKNNKDSHSLTTNIMEI---LRGDFS--SANNRDNTYNRVSED--LRSRIEVLKRKVIEKV-QHIQLLQKNVRA 142 (562)
T ss_dssp HHHHHHHHHHHHHHHHT---TSSHHH--HHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HhhchhHHHHHHHHHHH---HHHHHH--hhhccchhHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 55566777777777554 322111 111344455555543 7888888988888888 333555555554
No 50
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=31.22 E-value=3.7e+02 Score=26.00 Aligned_cols=13 Identities=15% Similarity=0.049 Sum_probs=8.4
Q ss_pred chHHHHHhhhccc
Q 045851 14 TAREAYCLYNHVK 26 (473)
Q Consensus 14 Ts~ellkvlnriw 26 (473)
++.||..+|-+|-
T Consensus 74 ~s~elG~~L~~i~ 86 (253)
T 2d1l_A 74 GTREIGSALTRMC 86 (253)
T ss_dssp HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH
Confidence 4567777776664
No 51
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=31.05 E-value=1.5e+02 Score=26.55 Aligned_cols=96 Identities=17% Similarity=0.205 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHH---HHhHhhhh---hhhHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKL---REERNSWY---VRKHYKMEAIVDELKDELSKERKSRKQIDF 111 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~Kql---aEEK~~wK---skE~eki~a~i~slk~ELe~ERk~Rkr~E~ 111 (473)
|.+|-.||..|+.+..+-+.++++.....-.+-+++ ..|...-| .-.-++++=-+++|..+|.-||.. +..
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~---~~e 80 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQA---ASE 80 (130)
T ss_dssp -----------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 567889999999999999999988876655444433 22322211 223467777889999999888765 222
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045851 112 LNSKFVNELAKAESSAKQFMQYYEEEKRA 140 (473)
Q Consensus 112 ln~KL~~ELaE~Kss~~~~lkelE~Erka 140 (473)
--+| |+..+.+..+..+||..==|+
T Consensus 81 EKrk----LAqLQ~AY~~LfqeYd~~lK~ 105 (130)
T 3cl3_D 81 EKRK----LAQLQVAYHQLFQEYDNHIKS 105 (130)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 2333 567888888888888764444
No 52
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=29.54 E-value=65 Score=24.36 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=27.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhH
Q 045851 33 TTFSFVSALQAELVQARLRIHELEDEHRSSKKKY 66 (473)
Q Consensus 33 s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~ei 66 (473)
.+.+=|-+|+.|+...|.+|.+|.++....+.++
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456689999999999999999988877666554
No 53
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=28.05 E-value=89 Score=24.75 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=18.9
Q ss_pred HHHHHHHHhhhhhhHHhHHHHHHH
Q 045851 97 DELSKERKSRKQIDFLNSKFVNEL 120 (473)
Q Consensus 97 ~ELe~ERk~Rkr~E~ln~KL~~EL 120 (473)
.=|+.|.+.|+++|.+=+|+.+..
T Consensus 28 ~~le~eqraRk~LE~~vrk~~k~~ 51 (61)
T 3l4f_A 28 KSLEEEQRARKDLEKLVRKVLKNM 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 347888889999998888887654
No 54
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=28.03 E-value=5.8e+02 Score=27.58 Aligned_cols=83 Identities=11% Similarity=0.097 Sum_probs=43.3
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhch------hhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 045851 29 EDQVTTFSFVSALQAELVQARLRIHELEDEHRSSK------KKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKE 102 (473)
Q Consensus 29 Eq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~------~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~E 102 (473)
|.+..++-++..+++||+.|-..+.+++++....- .+-.|=|=|.+- |+.+- .+.+|.
T Consensus 342 er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~~~n~~p~~~Gh~~w~~~~----~~~~~----------~~~dv~-- 405 (551)
T 2b5u_A 342 ERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAG----LKAQR----------AQTDVN-- 405 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCTTSTHHHHHHHHH----HHHHH----------HHHHHH--
T ss_pred HHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhhhhccChhhccchhhhhcc----chhhh----------hhhhhh--
Confidence 44455666667777777776666666666433221 011222333211 22111 111111
Q ss_pred HHhhhhhhHHhHHHHHHHHHHHHHHHHHHH
Q 045851 103 RKSRKQIDFLNSKFVNELAKAESSAKQFMQ 132 (473)
Q Consensus 103 Rk~Rkr~E~ln~KL~~ELaE~Kss~~~~lk 132 (473)
-.+.+--++++|++.++.+++-+|.
T Consensus 406 -----~~~a~~d~~~~~~s~~~~~ls~~me 430 (551)
T 2b5u_A 406 -----NKQAAFDAAAKEKSDADAALSSAME 430 (551)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHhhcccchhhhhhhhhh
Confidence 1255666778888888888888765
No 55
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.56 E-value=6.5e+02 Score=27.32 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=23.2
Q ss_pred hhhhhhhHhhh---hhhhhhhhHHHHHHHHHHHHHHhh-h
Q 045851 171 EERVQMKLVDA---KLALEHKYSQINKLVEELENFLMS-N 206 (473)
Q Consensus 171 EERVQMKL~eA---k~~leeK~s~ldkL~~elE~FL~s-k 206 (473)
+++|+.+|..- +..|++=...|-||..+|..=|++ |
T Consensus 123 KekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCK 162 (562)
T 3ghg_A 123 KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCR 162 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555554222 224555567778899999999988 5
No 56
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=26.50 E-value=3.8e+02 Score=24.65 Aligned_cols=47 Identities=9% Similarity=0.045 Sum_probs=22.3
Q ss_pred HHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHH
Q 045851 52 IHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDEL 99 (473)
Q Consensus 52 I~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~EL 99 (473)
+..+..+....++++...+.++..+.... -++-+|.+..-+..-.|+
T Consensus 100 l~~~~~~~~~~rK~~~~~~~k~~k~~~~~-~~~l~KaKk~Y~~~~~e~ 146 (301)
T 2efk_A 100 LTKYSQEMKQERKMHFQEGRRAQQQLENG-FKQLENSKRKFERDCREA 146 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555444332 234444444444443333
No 57
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=26.26 E-value=6.3e+02 Score=27.10 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=13.4
Q ss_pred hhhhhHhhhhhhhhhh-hHHHHHHHHHHHHHHhh
Q 045851 173 RVQMKLVDAKLALEHK-YSQINKLVEELENFLMS 205 (473)
Q Consensus 173 RVQMKL~eAk~~leeK-~s~ldkL~~elE~FL~s 205 (473)
||.--+...+..+++| +..++..+.+|+.-+.-
T Consensus 619 ~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~ 652 (695)
T 2j69_A 619 AVKECFDSYEREVSKRINDDIVSRKSELDNLVKQ 652 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444 33344444444444443
No 58
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=25.20 E-value=3.2e+02 Score=23.36 Aligned_cols=82 Identities=22% Similarity=0.277 Sum_probs=53.0
Q ss_pred HHHhhhccc---ccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHH
Q 045851 18 AYCLYNHVK---LLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDE 94 (473)
Q Consensus 18 llkvlnriw---leEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~s 94 (473)
+--+.|||. ---.+.++-+-|..|=.-|---..++=..+++.-..+-..+.|-.+|+-=+. .++||+.
T Consensus 13 v~if~NRmksn~~RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~~ee~R~~yE~LQDkL~qi~e---------AR~ALda 83 (98)
T 3f1i_H 13 VTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRLYYEGLQDKLAQIRD---------ARGALSA 83 (98)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
Confidence 334567776 2234556777788887777766666666666655555555655555543322 6788999
Q ss_pred HHHHHHHHHHhhhhhh
Q 045851 95 LKDELSKERKSRKQID 110 (473)
Q Consensus 95 lk~ELe~ERk~Rkr~E 110 (473)
|++|= ..|+|+.+|
T Consensus 84 LR~eH--~~Klrr~ae 97 (98)
T 3f1i_H 84 LREEH--REKLRRAAE 97 (98)
T ss_dssp HHHHH--HHHHHHHHC
T ss_pred HHHHH--HHHHHHHhc
Confidence 99875 667787765
No 59
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=24.95 E-value=1.3e+03 Score=30.20 Aligned_cols=7 Identities=29% Similarity=0.226 Sum_probs=5.2
Q ss_pred CCCcccc
Q 045851 428 LGNPHIT 434 (473)
Q Consensus 428 s~Nph~~ 434 (473)
..|||+.
T Consensus 2283 l~np~y~ 2289 (3245)
T 3vkg_A 2283 DPTAHFT 2289 (3245)
T ss_dssp CTTCCCC
T ss_pred CCCCCCC
Confidence 5688875
No 60
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=24.86 E-value=2.6e+02 Score=22.61 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 045851 85 HYKMEAIVDELKDELSKERKSRKQI 109 (473)
Q Consensus 85 ~eki~a~i~slk~ELe~ERk~Rkr~ 109 (473)
.+.+......+...|..||-+..++
T Consensus 34 eee~~~~~~~lek~L~~E~~LK~QA 58 (71)
T 1s1c_X 34 EEEISNLKAAFEKNINTERTLKTQA 58 (71)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456667778888888877653
No 61
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=23.84 E-value=2.7e+02 Score=26.44 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHH
Q 045851 38 VSALQAELVQARLRIHELEDEHRSSKKKYENL 69 (473)
Q Consensus 38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L 69 (473)
+..++++|..+++++....++....+.+++.+
T Consensus 72 l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~ 103 (369)
T 4dk0_A 72 LNTRKAALASYQAQLVARKTAYDVALSNYQRL 103 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666665555555555555443
No 62
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=22.69 E-value=1.7e+02 Score=22.15 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=19.9
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 045851 109 IDFLNSKFVNELAKAESSAKQFMQYYEE 136 (473)
Q Consensus 109 ~E~ln~KL~~ELaE~Kss~~~~lkelE~ 136 (473)
+-.-|.||+.-|.+++.-+.+.-.++++
T Consensus 21 L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 21 LAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344899999998888777776555543
No 63
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=21.59 E-value=7.8e+02 Score=26.49 Aligned_cols=60 Identities=23% Similarity=0.232 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045851 88 MEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEES 147 (473)
Q Consensus 88 i~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaRellE~v 147 (473)
+..-|..|.+|-..|+-.-++-+.+-.|++++|.+++.-...-.+.-+.|.+.=++||..
T Consensus 95 ~~~Kl~eLE~e~k~d~~~~khn~~I~~k~g~~l~~v~~~~~~~~~~e~~e~~q~~~LekA 154 (526)
T 3iyk_A 95 IQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKA 154 (526)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 334455555555555555666777777888888888877776666666666676777765
No 64
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.19 E-value=3.5e+02 Score=22.31 Aligned_cols=56 Identities=20% Similarity=0.421 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhchh---hHHHHHHHHHHhHhhhhhhhHHHHHHHHH
Q 045851 34 TFSFVSALQAELVQARLRIHELEDEHRSSKK---KYENLVRKLREERNSWYVRKHYKMEAIVD 93 (473)
Q Consensus 34 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~---eie~L~KqlaEEK~~wKskE~eki~a~i~ 93 (473)
.|--|.-|++|++.-+..-..|.++.+..+. .++.=..++.+|..+|. ++|++.+.
T Consensus 18 avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq----~Rl~~LLg 76 (81)
T 2jee_A 18 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ----ERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 3444667777777666666666665554333 35555677889999998 45555543
No 65
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=20.88 E-value=4e+02 Score=22.83 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhh
Q 045851 39 SALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNS 79 (473)
Q Consensus 39 ~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~ 79 (473)
.-|+.+|-+|+.-..+-+++--.-.+.+..|+--|..||+.
T Consensus 21 ~lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq 61 (99)
T 3ni0_A 21 HLLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQ 61 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56889999999888888888788889999999999888774
Done!