Query 045852
Match_columns 211
No_of_seqs 137 out of 1310
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 06:10:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.5 1E-13 2.2E-18 129.2 10.9 185 2-197 610-841 (1153)
2 PLN03210 Resistant to P. syrin 99.5 3E-13 6.5E-18 126.1 12.3 113 74-197 779-909 (1153)
3 PLN00113 leucine-rich repeat r 99.1 1.7E-10 3.6E-15 106.5 9.1 183 2-192 92-295 (968)
4 PLN00113 leucine-rich repeat r 99.1 3.7E-10 8E-15 104.2 8.7 144 46-194 185-345 (968)
5 KOG4341 F-box protein containi 98.9 1.2E-10 2.5E-15 94.6 -2.9 206 2-208 163-453 (483)
6 KOG3207 Beta-tubulin folding c 98.4 1.4E-07 3.1E-12 77.4 2.0 177 2-193 120-313 (505)
7 PRK15370 E3 ubiquitin-protein 98.3 1.7E-06 3.7E-11 77.5 7.0 166 3-192 199-378 (754)
8 KOG4658 Apoptotic ATPase [Sign 98.3 7.8E-07 1.7E-11 80.9 4.8 194 2-199 570-788 (889)
9 PRK15386 type III secretion pr 98.3 3.6E-06 7.8E-11 69.8 7.8 31 157-190 156-186 (426)
10 KOG4341 F-box protein containi 98.3 9.2E-08 2E-12 78.1 -1.8 42 130-172 400-441 (483)
11 PRK15370 E3 ubiquitin-protein 98.2 5.8E-06 1.2E-10 74.2 7.4 160 4-192 179-357 (754)
12 KOG3207 Beta-tubulin folding c 98.1 1.4E-06 3.1E-11 71.7 1.6 91 72-166 245-335 (505)
13 cd00116 LRR_RI Leucine-rich re 98.1 1.6E-06 3.5E-11 70.0 1.6 81 29-110 80-176 (319)
14 KOG2120 SCF ubiquitin ligase, 98.0 5.7E-07 1.2E-11 70.9 -1.3 161 31-193 186-375 (419)
15 cd00116 LRR_RI Leucine-rich re 98.0 1.4E-06 3.1E-11 70.3 0.1 108 2-110 22-148 (319)
16 PRK15387 E3 ubiquitin-protein 98.0 2.3E-05 4.9E-10 70.4 7.3 56 130-192 401-456 (788)
17 KOG1947 Leucine rich repeat pr 98.0 3.9E-07 8.5E-12 77.5 -3.8 110 2-112 187-308 (482)
18 KOG0617 Ras suppressor protein 97.9 2E-06 4.2E-11 62.9 -0.7 133 44-191 51-183 (264)
19 PRK15386 type III secretion pr 97.9 3E-05 6.4E-10 64.5 5.8 119 46-195 49-170 (426)
20 PRK15387 E3 ubiquitin-protein 97.8 0.00015 3.3E-09 65.2 9.0 32 157-192 382-413 (788)
21 KOG0444 Cytoskeletal regulator 97.7 2E-06 4.4E-11 74.1 -3.0 44 155-199 337-380 (1255)
22 KOG2120 SCF ubiquitin ligase, 97.7 1.8E-06 3.8E-11 68.2 -3.4 116 45-168 256-374 (419)
23 KOG4194 Membrane glycoprotein 97.7 2.4E-05 5.1E-10 67.1 2.3 135 46-190 290-448 (873)
24 KOG4194 Membrane glycoprotein 97.6 4.2E-05 9.2E-10 65.6 2.8 98 4-107 126-229 (873)
25 PF13855 LRR_8: Leucine rich r 97.6 0.00024 5.2E-09 42.9 5.3 59 131-192 1-60 (61)
26 KOG0617 Ras suppressor protein 97.6 1.3E-06 2.9E-11 63.7 -5.5 154 5-177 35-192 (264)
27 KOG0444 Cytoskeletal regulator 97.6 4.5E-06 9.8E-11 72.0 -3.4 115 46-174 265-379 (1255)
28 KOG4658 Apoptotic ATPase [Sign 97.5 4.4E-05 9.5E-10 69.8 2.5 124 46-175 714-847 (889)
29 PF14580 LRR_9: Leucine-rich r 97.5 0.00022 4.7E-09 52.9 4.9 101 4-110 20-124 (175)
30 PF13855 LRR_8: Leucine rich r 97.4 0.00023 4.9E-09 43.0 3.9 58 49-109 1-59 (61)
31 KOG3665 ZYG-1-like serine/thre 97.4 6.9E-05 1.5E-09 66.8 1.6 104 3-110 122-231 (699)
32 PF14580 LRR_9: Leucine-rich r 97.3 9.1E-05 2E-09 54.8 1.6 130 28-168 17-151 (175)
33 KOG1947 Leucine rich repeat pr 97.3 7.5E-05 1.6E-09 63.6 0.3 140 47-192 186-332 (482)
34 KOG3665 ZYG-1-like serine/thre 97.1 0.00021 4.5E-09 63.8 1.9 39 71-110 146-184 (699)
35 KOG0618 Serine/threonine phosp 97.1 6.1E-05 1.3E-09 67.5 -1.8 131 48-194 358-489 (1081)
36 KOG0618 Serine/threonine phosp 96.9 6.2E-05 1.3E-09 67.5 -3.6 123 5-143 361-488 (1081)
37 PF12799 LRR_4: Leucine Rich r 96.4 0.0027 5.9E-08 35.7 2.3 33 50-83 2-34 (44)
38 KOG3864 Uncharacterized conser 96.2 0.00049 1.1E-08 51.5 -2.1 69 96-171 122-190 (221)
39 KOG2982 Uncharacterized conser 96.2 0.016 3.5E-07 46.3 6.1 180 2-194 96-289 (418)
40 KOG0472 Leucine-rich repeat pr 96.2 4.5E-05 9.8E-10 62.7 -8.4 118 62-192 149-286 (565)
41 KOG1259 Nischarin, modulator o 96.0 0.0014 3E-08 52.3 -0.4 59 46-109 281-339 (490)
42 COG4886 Leucine-rich repeat (L 95.9 0.012 2.6E-07 49.2 4.5 35 155-191 253-287 (394)
43 PF12799 LRR_4: Leucine Rich r 95.8 0.0093 2E-07 33.5 2.5 33 132-167 2-34 (44)
44 KOG3864 Uncharacterized conser 95.7 0.0015 3.2E-08 49.1 -1.4 69 129-197 123-192 (221)
45 PLN03150 hypothetical protein; 95.4 0.046 1E-06 48.7 6.4 65 44-110 437-501 (623)
46 PLN03150 hypothetical protein; 95.1 0.047 1E-06 48.7 5.7 39 69-109 438-476 (623)
47 KOG2982 Uncharacterized conser 94.9 0.006 1.3E-07 48.7 -0.4 118 44-168 92-210 (418)
48 PF13504 LRR_7: Leucine rich r 94.0 0.037 8E-07 24.2 1.3 16 158-174 2-17 (17)
49 KOG0472 Leucine-rich repeat pr 93.9 0.02 4.3E-07 47.6 0.5 39 69-110 501-539 (565)
50 KOG2739 Leucine-rich acidic nu 93.1 0.063 1.4E-06 41.9 2.0 103 2-110 42-154 (260)
51 KOG1259 Nischarin, modulator o 92.8 0.023 5E-07 45.5 -0.7 124 30-169 284-411 (490)
52 KOG2739 Leucine-rich acidic nu 92.3 0.063 1.4E-06 41.9 1.1 81 29-110 42-127 (260)
53 PF00560 LRR_1: Leucine Rich R 91.8 0.12 2.6E-06 24.1 1.4 18 158-176 1-18 (22)
54 KOG2123 Uncharacterized conser 91.7 0.0069 1.5E-07 47.9 -4.7 78 29-109 18-98 (388)
55 COG4886 Leucine-rich repeat (L 91.7 0.14 3E-06 42.8 2.6 156 3-170 116-290 (394)
56 smart00367 LRR_CC Leucine-rich 91.6 0.11 2.4E-06 25.3 1.2 19 72-90 1-19 (26)
57 KOG2123 Uncharacterized conser 91.0 0.014 3.1E-07 46.2 -3.6 98 3-106 19-124 (388)
58 KOG1644 U2-associated snRNP A' 87.2 1.4 3.1E-05 33.5 4.7 36 46-82 61-97 (233)
59 PF13306 LRR_5: Leucine rich r 81.1 5.4 0.00012 27.1 5.4 94 4-107 13-111 (129)
60 KOG4237 Extracellular matrix p 79.6 0.93 2E-05 38.0 1.1 76 2-81 273-354 (498)
61 KOG1859 Leucine-rich repeat pr 76.3 0.11 2.3E-06 46.7 -5.4 73 2-82 186-263 (1096)
62 KOG1909 Ran GTPase-activating 75.9 1.3 2.8E-05 36.4 1.0 64 46-110 210-281 (382)
63 KOG0532 Leucine-rich repeat (L 75.4 0.46 9.9E-06 41.5 -1.8 22 169-190 222-243 (722)
64 KOG0531 Protein phosphatase 1, 74.6 2.1 4.6E-05 36.2 2.0 100 2-109 94-196 (414)
65 smart00369 LRR_TYP Leucine-ric 74.4 2.4 5.1E-05 20.3 1.4 20 2-22 1-20 (26)
66 smart00370 LRR Leucine-rich re 74.4 2.4 5.1E-05 20.3 1.4 20 2-22 1-20 (26)
67 KOG0532 Leucine-rich repeat (L 72.8 0.65 1.4E-05 40.6 -1.5 101 51-168 145-245 (722)
68 KOG1644 U2-associated snRNP A' 71.3 3.9 8.4E-05 31.2 2.5 79 2-84 63-151 (233)
69 PF13306 LRR_5: Leucine rich r 67.8 34 0.00075 23.0 6.8 101 70-190 9-112 (129)
70 KOG1859 Leucine-rich repeat pr 67.1 1.1 2.5E-05 40.5 -1.2 38 48-85 83-121 (1096)
71 PF13516 LRR_6: Leucine Rich r 60.0 7.1 0.00015 18.1 1.4 12 73-84 2-13 (24)
72 KOG0531 Protein phosphatase 1, 54.8 8.2 0.00018 32.6 1.8 10 48-57 117-126 (414)
73 smart00365 LRR_SD22 Leucine-ri 50.4 16 0.00034 17.8 1.7 17 2-19 1-17 (26)
74 PF07725 LRR_3: Leucine Rich R 41.7 16 0.00035 16.6 0.9 18 4-22 1-18 (20)
75 KOG4579 Leucine-rich repeat (L 37.3 2.3 5E-05 30.5 -3.4 35 47-82 75-109 (177)
76 KOG4237 Extracellular matrix p 24.7 46 0.001 28.3 1.5 84 95-189 270-354 (498)
77 smart00368 LRR_RI Leucine rich 22.3 58 0.0013 15.8 1.1 11 3-13 2-12 (28)
78 smart00364 LRR_BAC Leucine-ric 21.2 60 0.0013 15.8 1.0 17 3-20 2-18 (26)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.50 E-value=1e-13 Score=129.18 Aligned_cols=185 Identities=24% Similarity=0.344 Sum_probs=132.2
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccC----CchhhhcCCccEEecccCccccccCCCCCCCCCccE
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQN----SKLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTK 77 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~----~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~ 77 (211)
+.+|++|++.++ .++.++.+. ..+++|+.|++.... .+..+.+++|++|.+.+|..+..++..+..+++|+.
T Consensus 610 ~~~L~~L~L~~s-~l~~L~~~~---~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 610 PENLVKLQMQGS-KLEKLWDGV---HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred ccCCcEEECcCc-ccccccccc---ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence 357888888877 677776543 457889999885421 123456889999999999999888888888999999
Q ss_pred EeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccc-----------cCCCC-CCcc-----------------
Q 045852 78 LRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVAS-----------EGDAA-NDEI----------------- 128 (211)
Q Consensus 78 L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~-----------~~~~~-~~~~----------------- 128 (211)
|++++|..++.++. ..++++|+.|++++|..++.+ ... ..... ....
T Consensus 686 L~L~~c~~L~~Lp~---~i~l~sL~~L~Lsgc~~L~~~-p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 686 LDMSRCENLEILPT---GINLKSLYRLNLSGCSRLKSF-PDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEK 761 (1153)
T ss_pred EeCCCCCCcCccCC---cCCCCCCCEEeCCCCCCcccc-ccccCCcCeeecCCCccccccccccccccccccccccchhh
Confidence 99999999888764 227889999999988766543 211 00000 0000
Q ss_pred --------------CCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCCCc
Q 045852 129 --------------IFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIEKL 194 (211)
Q Consensus 129 --------------~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~~l 194 (211)
..++|+.|.+.+++.+..++.. ...+++|+.|++.+|++++.+|.+. .+++|+.|++.+|.++
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s--i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS--IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRL 838 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccccChh--hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcc
Confidence 1245666667666666666543 4467899999999999999998775 6788999999999887
Q ss_pred hhh
Q 045852 195 FYL 197 (211)
Q Consensus 195 ~~~ 197 (211)
...
T Consensus 839 ~~~ 841 (1153)
T PLN03210 839 RTF 841 (1153)
T ss_pred ccc
Confidence 644
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.48 E-value=3e-13 Score=126.06 Aligned_cols=113 Identities=24% Similarity=0.326 Sum_probs=77.4
Q ss_pred CccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccC---
Q 045852 74 CLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSA--- 150 (211)
Q Consensus 74 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--- 150 (211)
+|+.|++++|+.+..++. ..+++++|+.|++.+|.+++.+ .. ...+++|+.|.+++|..++.++..
T Consensus 779 sL~~L~Ls~n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~L-P~--------~~~L~sL~~L~Ls~c~~L~~~p~~~~n 847 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPS--SIQNLHKLEHLEIENCINLETL-PT--------GINLESLESLDLSGCSRLRTFPDISTN 847 (1153)
T ss_pred cchheeCCCCCCccccCh--hhhCCCCCCEEECCCCCCcCee-CC--------CCCccccCEEECCCCCccccccccccc
Confidence 445555555554444432 4567788888888888777766 32 123677888888877666544321
Q ss_pred ---------------cccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCCCchhh
Q 045852 151 ---------------NYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIEKLFYL 197 (211)
Q Consensus 151 ---------------~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~~l~~~ 197 (211)
.....+++|+.|++.+|++++.+|.....+++|+.+.+.+|++|..+
T Consensus 848 L~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 848 ISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred cCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 01234688999999999999998887777889999999999988643
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.14 E-value=1.7e-10 Score=106.50 Aligned_cols=183 Identities=19% Similarity=0.108 Sum_probs=88.2
Q ss_pred CCCccEEEeccccccce-ecccccCcccccCccEEEEEccCCc---hhhhcCCccEEecccCccccccCCCCCCCCCccE
Q 045852 2 LPNLEELRLSKNKDIAK-IWQGPFTDHLLNKLEHLWLWEQNSK---LNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTK 77 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~-i~~~~~~~~~~~~Lk~L~l~~~~~~---~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~ 77 (211)
+++|+.|+++++ ++.. +.... ...+.+|++|++...... ....+++|++|+++++.-...++..+..+++|+.
T Consensus 92 l~~L~~L~Ls~n-~~~~~ip~~~--~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 92 LPYIQTINLSNN-QLSGPIPDDI--FTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCCEEECCCC-ccCCcCChHH--hccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 566777777766 3331 11110 013566666666432211 1134566677776665332233344556677777
Q ss_pred EeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCC-----------------CCCCccCCCccceeeccc
Q 045852 78 LRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGD-----------------AANDEIIFPKLGYLELHR 140 (211)
Q Consensus 78 L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~-----------------~~~~~~~~~~L~~L~l~~ 140 (211)
|+++++.-....+. .+.++++|++|++++|.-...+ +..-+. .+.....+++|+.|++.+
T Consensus 169 L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 169 LDLGGNVLVGKIPN--SLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred EECccCcccccCCh--hhhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 77776643333322 3456677777776665421111 110000 000011245555555555
Q ss_pred cccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 141 LQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 141 c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
+.--..++. ....+++|++|.+.++.-...+|..+..+++|++|++.+|.
T Consensus 246 n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 246 NNLTGPIPS--SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred ceeccccCh--hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 432112211 12345666666666664434455555556677777776664
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.08 E-value=3.7e-10 Score=104.22 Aligned_cols=144 Identities=15% Similarity=0.026 Sum_probs=67.4
Q ss_pred hhcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCC---
Q 045852 46 TVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGD--- 122 (211)
Q Consensus 46 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~--- 122 (211)
..+++|++|+++++.-...++..+..+++|+.|+++++.-....+. ....+++|++|++++|.-...+ ...-+.
T Consensus 185 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~ 261 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY--EIGGLTSLNHLDLVYNNLTGPI-PSSLGNLKN 261 (968)
T ss_pred hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh--hHhcCCCCCEEECcCceecccc-ChhHhCCCC
Confidence 4455555555555433223333444556666666655542222221 3456666666666655311111 100000
Q ss_pred --------------CCCCccCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEe
Q 045852 123 --------------AANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCL 188 (211)
Q Consensus 123 --------------~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i 188 (211)
.+.....+++|+.|+++++.--..++. ....+++|+.|++.++.-...+|.....+++|+.|.+
T Consensus 262 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE--LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred CCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh--hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence 000001234555555554422111111 1234566777777766554455555556677777777
Q ss_pred ccCCCc
Q 045852 189 NDIEKL 194 (211)
Q Consensus 189 ~~c~~l 194 (211)
.+|.-.
T Consensus 340 ~~n~l~ 345 (968)
T PLN00113 340 WSNKFS 345 (968)
T ss_pred cCCCCc
Confidence 776543
No 5
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.87 E-value=1.2e-10 Score=94.60 Aligned_cols=206 Identities=19% Similarity=0.180 Sum_probs=101.3
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccCCc-------hhhhcCCccEEecccCcccccc-----C---
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNSK-------LNTVFQNLETLSAHFCLNLTNL-----M--- 66 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~~-------~~~~l~~L~~L~l~~c~~l~~l-----~--- 66 (211)
.||+|+|.+.+|.++++..... ....+++|++|++...+.+ ....+++|++|+++.|+.+..- .
T Consensus 163 CpnIehL~l~gc~~iTd~s~~s-la~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLLS-LARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred CCchhhhhhhcceeccHHHHHH-HHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 4667777777776555432211 1235677777776554443 1245677777777777655530 0
Q ss_pred ----------------------------------------------CCCCCCCCccEEeeccCccchhccchHHHhccCC
Q 045852 67 ----------------------------------------------PSSASFRCLTKLRVWACEHLINLVASSAAKNLVQ 100 (211)
Q Consensus 67 ----------------------------------------------~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 100 (211)
.....+..|+.|+.++|.++.+....+..++.++
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN 321 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence 0001134445555555665555554555566677
Q ss_pred CcEEEEeecCCCcEEecccc----------CCC----------CCCccCCCccceeeccccccccccccC---cccccCC
Q 045852 101 LVHVSVSECSKITELVVASE----------GDA----------ANDEIIFPKLGYLELHRLQSLTTFCSA---NYTFKFP 157 (211)
Q Consensus 101 L~~L~i~~c~~l~~~~~~~~----------~~~----------~~~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~~~ 157 (211)
|+.+.++.|.++...-|..- +.+ .......+.|+.++++.|...++.... .......
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~ 401 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE 401 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence 77777777765433311100 000 001123455555555555444433110 0111234
Q ss_pred CcceeeeccCCCCeecc-CCCcCCCCccEEEeccCCCchhhchHHHHHHHHh
Q 045852 158 SLCDLSVSACPKMKIFC-GGVFSAPRLKEVCLNDIEKLFYLLIFEIIRFLIE 208 (211)
Q Consensus 158 ~L~~L~i~~c~~l~~l~-~~~~~~~~L~~l~i~~c~~l~~~~~~~~~~~l~~ 208 (211)
.|+.+.+.+||.+++-- ......++|+++++.+|..-+.-+.....+++-+
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~ 453 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPN 453 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCcc
Confidence 45556666666544311 1122345666666666666555544444444433
No 6
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.4e-07 Score=77.35 Aligned_cols=177 Identities=16% Similarity=0.154 Sum_probs=104.3
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccC-------CchhhhcCCccEEecccCccccccCC--CCCCC
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQN-------SKLNTVFQNLETLSAHFCLNLTNLMP--SSASF 72 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~-------~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~l 72 (211)
+.+|++..++++ .+...+.. -....+++++.|+++..- ......+|+|+.|+++. .++...+. ....+
T Consensus 120 ~kkL~~IsLdn~-~V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 120 LKKLREISLDNY-RVEDAGIE-EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-NRLSNFISSNTTLLL 196 (505)
T ss_pred HHhhhheeecCc-cccccchh-hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc-ccccCCccccchhhh
Confidence 457888888888 67766633 123568999999985422 23557899999999975 34443322 22368
Q ss_pred CCccEEeeccCc-cchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCc
Q 045852 73 RCLTKLRVWACE-HLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSAN 151 (211)
Q Consensus 73 ~~L~~L~l~~c~-~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 151 (211)
++|+.|.++.|. +-+++.. ....+|+|+.|++.+-..+... .. ....+..|+.|++++-+. .++..+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~--~~~~fPsl~~L~L~~N~~~~~~-~~-------~~~i~~~L~~LdLs~N~l-i~~~~~~ 265 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQW--ILLTFPSLEVLYLEANEIILIK-AT-------STKILQTLQELDLSNNNL-IDFDQGY 265 (505)
T ss_pred hhhheEEeccCCCCHHHHHH--HHHhCCcHHHhhhhccccccee-cc-------hhhhhhHHhhccccCCcc-ccccccc
Confidence 999999999996 2233322 4568999999988865422111 10 122356677777766432 3333222
Q ss_pred ccccCCCcceeeeccCCCCee--ccCC-----CcCCCCccEEEeccCCC
Q 045852 152 YTFKFPSLCDLSVSACPKMKI--FCGG-----VFSAPRLKEVCLNDIEK 193 (211)
Q Consensus 152 ~~~~~~~L~~L~i~~c~~l~~--l~~~-----~~~~~~L~~l~i~~c~~ 193 (211)
....+|.|..|.++.|. +.+ +|+. +..+++|+.|++...+-
T Consensus 266 ~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCcc
Confidence 23456667766666653 222 2222 22346677776655443
No 7
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.30 E-value=1.7e-06 Score=77.50 Aligned_cols=166 Identities=19% Similarity=0.203 Sum_probs=87.2
Q ss_pred CCccEEEeccccccceecccccCcccccCccEEEEEccCCch-h-hhcCCccEEecccCccccccCCCCCCCCCccEEee
Q 045852 3 PNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNSKL-N-TVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRV 80 (211)
Q Consensus 3 ~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~~~-~-~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l 80 (211)
++|+.|+++++ +++.+... .+.+|+.|++....... . ...++|+.|.++++ ++..++..+ ..+|+.|++
T Consensus 199 ~~L~~L~Ls~N-~LtsLP~~-----l~~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N-~L~~LP~~l--~s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNN-ELKSLPEN-----LQGNIKTLYANSNQLTSIPATLPDTIQEMELSIN-RITELPERL--PSALQSLDL 269 (754)
T ss_pred cCCcEEEecCC-CCCcCChh-----hccCCCEEECCCCccccCChhhhccccEEECcCC-ccCcCChhH--hCCCCEEEC
Confidence 35778888877 66665432 24577777764322211 1 12345777777665 344443322 245666666
Q ss_pred ccCccchhccchHHHhccCCCcEEEEeecCCCcEEecccc------------CCCCCCccCCCccceeeccccccccccc
Q 045852 81 WACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASE------------GDAANDEIIFPKLGYLELHRLQSLTTFC 148 (211)
Q Consensus 81 ~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~------------~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 148 (211)
++ ..++.++. .-.++|+.|+++++. ++.+ ...- .....+...+++|+.|.+.++ .++.++
T Consensus 270 s~-N~L~~LP~----~l~~sL~~L~Ls~N~-Lt~L-P~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N-~Lt~LP 341 (754)
T PRK15370 270 FH-NKISCLPE----NLPEELRYLSVYDNS-IRTL-PAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN-ALTSLP 341 (754)
T ss_pred cC-CccCcccc----ccCCCCcEEECCCCc-cccC-cccchhhHHHHHhcCCccccCCccccccceeccccCC-ccccCC
Confidence 53 34444331 112456666666542 3332 1100 000001122456777777766 355544
Q ss_pred cCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 149 SANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 149 ~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
.. ..++|+.|+++++ +++.+|... .++|+.|++.+|.
T Consensus 342 ~~----l~~sL~~L~Ls~N-~L~~LP~~l--p~~L~~LdLs~N~ 378 (754)
T PRK15370 342 AS----LPPELQVLDVSKN-QITVLPETL--PPTITTLDVSRNA 378 (754)
T ss_pred hh----hcCcccEEECCCC-CCCcCChhh--cCCcCEEECCCCc
Confidence 31 1267888888887 466666543 3678888888774
No 8
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.29 E-value=7.8e-07 Score=80.89 Aligned_cols=194 Identities=19% Similarity=0.151 Sum_probs=117.5
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccCCc----hhhhcCCccEEecccCccccccCCCCCCCCCccE
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNSK----LNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTK 77 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~~----~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~ 77 (211)
++.|..|++++|.++.+++. ..+.+.+||+|++....-. ....+.+|.+|+++....+..++.....+++|++
T Consensus 570 m~~LrVLDLs~~~~l~~LP~---~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPS---SIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred CcceEEEECCCCCccCcCCh---HHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence 67788888888877777653 2355778888887654332 3466778888888877766655333334888888
Q ss_pred EeeccCccchhccchHHHhccCCCcEEEEeecCC--CcEEe------------c-cccCCC--CCCccCCCccceeeccc
Q 045852 78 LRVWACEHLINLVASSAAKNLVQLVHVSVSECSK--ITELV------------V-ASEGDA--ANDEIIFPKLGYLELHR 140 (211)
Q Consensus 78 L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~--l~~~~------------~-~~~~~~--~~~~~~~~~L~~L~l~~ 140 (211)
|.+..-..-.+........++.+|+.+.+..++. ++.+. . ...... ......+.+|+.|.+.+
T Consensus 647 L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~ 726 (889)
T KOG4658|consen 647 LRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILD 726 (889)
T ss_pred EEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEc
Confidence 8886543111111112335666666666654442 01100 0 000000 01123477899999999
Q ss_pred cccccc---cccCccccc-CCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCCCchhhch
Q 045852 141 LQSLTT---FCSANYTFK-FPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIEKLFYLLI 199 (211)
Q Consensus 141 c~~l~~---~~~~~~~~~-~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~~l~~~~~ 199 (211)
|...+. +........ |+++..+.+.+|..++.+.. ...+|+|+.|.+..|+.+..+.+
T Consensus 727 ~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~-~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 727 CGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW-LLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred CCCchhhcccccccchhhhHHHHHHHHhhccccccccch-hhccCcccEEEEecccccccCCC
Confidence 876432 111112223 77889999999988886543 24579999999999998876654
No 9
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.27 E-value=3.6e-06 Score=69.84 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=17.1
Q ss_pred CCcceeeeccCCCCeeccCCCcCCCCccEEEecc
Q 045852 157 PSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLND 190 (211)
Q Consensus 157 ~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~ 190 (211)
++|++|.+.+|..+. +|+++ +.+|+.|.+.+
T Consensus 156 sSLk~L~Is~c~~i~-LP~~L--P~SLk~L~ls~ 186 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPEKL--PESLQSITLHI 186 (426)
T ss_pred CcccEEEecCCCccc-Ccccc--cccCcEEEecc
Confidence 457777777776543 34322 25566666544
No 10
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.25 E-value=9.2e-08 Score=78.09 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=32.2
Q ss_pred CCccceeeccccccccccccCcccccCCCcceeeeccCCCCee
Q 045852 130 FPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKI 172 (211)
Q Consensus 130 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~ 172 (211)
...|..+.+.+||..++-... ....|++|+.+++.+|.....
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLE-HLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred ccccceeeecCCCCchHHHHH-HHhhCcccceeeeechhhhhh
Confidence 567899999999987764332 244689999999999987654
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.16 E-value=5.8e-06 Score=74.17 Aligned_cols=160 Identities=19% Similarity=0.164 Sum_probs=97.5
Q ss_pred CccEEEeccccccceecccccCcccccCccEEEEEccCCch--hhhcCCccEEecccCccccccCCCCCCCCCccEEeec
Q 045852 4 NLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNSKL--NTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVW 81 (211)
Q Consensus 4 ~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~~~--~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~ 81 (211)
+...|++++. +++.+... ..++|+.|++....... ...+++|++|.++++ +++.++... .++|+.|+++
T Consensus 179 ~~~~L~L~~~-~LtsLP~~-----Ip~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N-~LtsLP~~l--~~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKIL-GLTTIPAC-----IPEQITTLILDNNELKSLPENLQGNIKTLYANSN-QLTSIPATL--PDTIQEMELS 249 (754)
T ss_pred CceEEEeCCC-CcCcCCcc-----cccCCcEEEecCCCCCcCChhhccCCCEEECCCC-ccccCChhh--hccccEEECc
Confidence 4567888776 66665432 24578888885433221 123468999999876 577664432 3589999999
Q ss_pred cCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCc----------
Q 045852 82 ACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSAN---------- 151 (211)
Q Consensus 82 ~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~---------- 151 (211)
+|. +..++. . ...+|+.|++++ +++..+ .. ..+++|+.|.++++ +++.++...
T Consensus 250 ~N~-L~~LP~--~--l~s~L~~L~Ls~-N~L~~L-P~---------~l~~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls 312 (754)
T PRK15370 250 INR-ITELPE--R--LPSALQSLDLFH-NKISCL-PE---------NLPEELRYLSVYDN-SIRTLPAHLPSGITHLNVQ 312 (754)
T ss_pred CCc-cCcCCh--h--HhCCCCEEECcC-CccCcc-cc---------ccCCCCcEEECCCC-ccccCcccchhhHHHHHhc
Confidence 975 455542 1 235799999974 456654 21 11345666666554 333322110
Q ss_pred -------ccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 152 -------YTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 152 -------~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
.....++|+.|.+.+| .++.+|..+ .++|+.|++.+|.
T Consensus 313 ~N~Lt~LP~~l~~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N~ 357 (754)
T PRK15370 313 SNSLTALPETLPPGLKTLEAGEN-ALTSLPASL--PPELQVLDVSKNQ 357 (754)
T ss_pred CCccccCCccccccceeccccCC-ccccCChhh--cCcccEEECCCCC
Confidence 0112357888888887 466677543 3789999998874
No 12
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.4e-06 Score=71.67 Aligned_cols=91 Identities=18% Similarity=0.254 Sum_probs=43.9
Q ss_pred CCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCc
Q 045852 72 FRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSAN 151 (211)
Q Consensus 72 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 151 (211)
++.|+.|++++-..+. .......+.+|.|..|.++.|. +.++.+.+. +..+....||+|++|.+..- +..+|..-.
T Consensus 245 ~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~-~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~ 320 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTG-IASIAEPDV-ESLDKTHTFPKLEYLNISEN-NIRDWRSLN 320 (505)
T ss_pred hhHHhhccccCCcccc-cccccccccccchhhhhccccC-cchhcCCCc-cchhhhcccccceeeecccC-ccccccccc
Confidence 5566666666643322 2212245667777777777665 433311111 11112345778887777543 222232222
Q ss_pred ccccCCCcceeeecc
Q 045852 152 YTFKFPSLCDLSVSA 166 (211)
Q Consensus 152 ~~~~~~~L~~L~i~~ 166 (211)
.....++|+++.+..
T Consensus 321 ~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 321 HLRTLENLKHLRITL 335 (505)
T ss_pred hhhccchhhhhhccc
Confidence 233345666665443
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.06 E-value=1.6e-06 Score=70.01 Aligned_cols=81 Identities=15% Similarity=0.035 Sum_probs=35.7
Q ss_pred ccCccEEEEEccCCc-----hhhhc---CCccEEecccCccccc-----cCCCCCCC-CCccEEeeccCccchhc--cch
Q 045852 29 LNKLEHLWLWEQNSK-----LNTVF---QNLETLSAHFCLNLTN-----LMPSSASF-RCLTKLRVWACEHLINL--VAS 92 (211)
Q Consensus 29 ~~~Lk~L~l~~~~~~-----~~~~l---~~L~~L~l~~c~~l~~-----l~~~~~~l-~~L~~L~l~~c~~l~~~--~~~ 92 (211)
+++|++|++.+.... ....+ ++|++|++++|. +.. +......+ ++|+.|++++|.--... ...
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 456666666443321 11222 236666666653 221 11122334 56666666666422100 001
Q ss_pred HHHhccCCCcEEEEeecC
Q 045852 93 SAAKNLVQLVHVSVSECS 110 (211)
Q Consensus 93 ~~~~~l~~L~~L~i~~c~ 110 (211)
.....+++|++|++++|.
T Consensus 159 ~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 159 KALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHhCCCcCEEECcCCC
Confidence 122344556666666553
No 14
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=5.7e-07 Score=70.85 Aligned_cols=161 Identities=21% Similarity=0.154 Sum_probs=105.6
Q ss_pred CccEEEEEccCC------chhhhcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEE
Q 045852 31 KLEHLWLWEQNS------KLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHV 104 (211)
Q Consensus 31 ~Lk~L~l~~~~~------~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 104 (211)
.|++|+++...- .+.+.+++|+.|.+++..--..+...+..-.+|+.|+++.|.+++.-...-+..++..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466776644221 24567788888888775322223334555678999999999988876655567789999999
Q ss_pred EEeecCCCcEEecc----ccCC--------------CCCC----ccCCCccceeeccccccccccccCcccccCCCccee
Q 045852 105 SVSECSKITELVVA----SEGD--------------AAND----EIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDL 162 (211)
Q Consensus 105 ~i~~c~~l~~~~~~----~~~~--------------~~~~----~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L 162 (211)
++++|.--.+. +. .-+. ...+ ....|+|-+|++++|..++.-+. .....|+.|++|
T Consensus 266 NlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~-~~~~kf~~L~~l 343 (419)
T KOG2120|consen 266 NLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFKFNYLQHL 343 (419)
T ss_pred CchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH-HHHHhcchheee
Confidence 99998743332 21 0000 0000 12367888999998888776333 346689999999
Q ss_pred eeccCCCCee-ccCCCcCCCCccEEEeccCCC
Q 045852 163 SVSACPKMKI-FCGGVFSAPRLKEVCLNDIEK 193 (211)
Q Consensus 163 ~i~~c~~l~~-l~~~~~~~~~L~~l~i~~c~~ 193 (211)
+++.|..+.. .--.+.+.|+|.+|++.+|-.
T Consensus 344 SlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 344 SLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 9999986531 112234679999999999853
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.99 E-value=1.4e-06 Score=70.26 Aligned_cols=108 Identities=17% Similarity=0.009 Sum_probs=64.1
Q ss_pred CCCccEEEeccccccceecccccC--cccccCccEEEEEccCCc-----------hhhhcCCccEEecccCccccccCCC
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFT--DHLLNKLEHLWLWEQNSK-----------LNTVFQNLETLSAHFCLNLTNLMPS 68 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~--~~~~~~Lk~L~l~~~~~~-----------~~~~l~~L~~L~l~~c~~l~~l~~~ 68 (211)
+++|++|++++| +++........ ....++++++++...... ....+++|++|.+++|.--......
T Consensus 22 l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 22 LLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 356889999988 55432111111 124667888887432211 2345679999999988643322222
Q ss_pred CCCC---CCccEEeeccCccchhccc--hHHHhcc-CCCcEEEEeecC
Q 045852 69 SASF---RCLTKLRVWACEHLINLVA--SSAAKNL-VQLVHVSVSECS 110 (211)
Q Consensus 69 ~~~l---~~L~~L~l~~c~~l~~~~~--~~~~~~l-~~L~~L~i~~c~ 110 (211)
...+ ++|++|++++|.--..... ......+ ++|+.|++++|.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 2222 5699999999863321111 1123455 899999999886
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.97 E-value=2.3e-05 Score=70.41 Aligned_cols=56 Identities=18% Similarity=0.054 Sum_probs=39.8
Q ss_pred CCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 130 FPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 130 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
.++|+.|++++. .++.++. .+..|+.|+++++ +++.+|..+..+++|+.|++.+++
T Consensus 401 ~s~L~~LdLS~N-~LssIP~-----l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 401 PSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ccCCCEEEccCC-cCCCCCc-----chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence 356788888775 3555432 1246778888776 577788877778899999988875
No 17
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.96 E-value=3.9e-07 Score=77.54 Aligned_cols=110 Identities=22% Similarity=0.192 Sum_probs=72.0
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEc-------cC---CchhhhcCCccEEecccCccccccC--CCC
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWE-------QN---SKLNTVFQNLETLSAHFCLNLTNLM--PSS 69 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~-------~~---~~~~~~l~~L~~L~l~~c~~l~~l~--~~~ 69 (211)
.++|+.+.+.+|..+.+.... ......++|+.|.+.. .+ ......+++|+.|++..|..+++.. ...
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLD-ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHH-HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 366777777777666653311 1123567888887643 11 1133556788888888887655432 112
Q ss_pred CCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCC
Q 045852 70 ASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKI 112 (211)
Q Consensus 70 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l 112 (211)
..+++|+.|.+.+|..+++.........+++|++|++.+|..+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 2378888888888888777766667778888888888888765
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.88 E-value=2e-06 Score=62.87 Aligned_cols=133 Identities=19% Similarity=0.123 Sum_probs=90.9
Q ss_pred hhhhcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCC
Q 045852 44 LNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDA 123 (211)
Q Consensus 44 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 123 (211)
.+..+.+||.|++.+ ..+++++.++.++|+|+.|.+.- ..+..++- ..+.+|.||.|++.+-+ +.+-... |
T Consensus 51 nia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lpr--gfgs~p~levldltynn-l~e~~lp--g-- 121 (264)
T KOG0617|consen 51 NIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPR--GFGSFPALEVLDLTYNN-LNENSLP--G-- 121 (264)
T ss_pred cHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCcc--ccCCCchhhhhhccccc-cccccCC--c--
Confidence 446788899999865 57888888999999999998873 44554443 56789999999998654 3222011 0
Q ss_pred CCCccCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccC
Q 045852 124 ANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDI 191 (211)
Q Consensus 124 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c 191 (211)
.-.....|+.|++.+- .++.++.. ...+.+|+-|.+++. .+-.+|..++.+.+|++|+|.+.
T Consensus 122 --nff~m~tlralyl~dn-dfe~lp~d--vg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 122 --NFFYMTTLRALYLGDN-DFEILPPD--VGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred --chhHHHHHHHHHhcCC-CcccCChh--hhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhcccc
Confidence 0111345666666543 45555553 335578888888877 45568888888899999998774
No 19
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.87 E-value=3e-05 Score=64.51 Aligned_cols=119 Identities=19% Similarity=0.261 Sum_probs=80.4
Q ss_pred hhcCCccEEecccCccccccCCCCCCCC-CccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCC
Q 045852 46 TVFQNLETLSAHFCLNLTNLMPSSASFR-CLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAA 124 (211)
Q Consensus 46 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 124 (211)
..++++..|.+++| .++.++ .+| +|+.|.+++|..++.++. . -.++|++|++++|.++..+
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~--~--LP~nLe~L~Ls~Cs~L~sL--------- 110 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLP----VLPNELTEITIENCNNLTTLPG--S--IPEGLEKLTVCHCPEISGL--------- 110 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccC----CCCCCCcEEEccCCCCcccCCc--h--hhhhhhheEccCccccccc---------
Confidence 34789999999999 777764 244 799999999999977753 1 2368999999999877665
Q ss_pred CCccCCCccceeeccc--cccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCCCch
Q 045852 125 NDEIIFPKLGYLELHR--LQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIEKLF 195 (211)
Q Consensus 125 ~~~~~~~~L~~L~l~~--c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~~l~ 195 (211)
-+.|+.|++.. +..+..++ ++|+.|.+.+.......+.....+++|+.|.+.+|....
T Consensus 111 -----P~sLe~L~L~~n~~~~L~~LP--------ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 111 -----PESVRSLEIKGSATDSIKNVP--------NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII 170 (426)
T ss_pred -----ccccceEEeCCCCCcccccCc--------chHhheeccccccccccccccccCCcccEEEecCCCccc
Confidence 34577777652 22232221 468888886543221111111234789999999999765
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.76 E-value=0.00015 Score=65.21 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=21.1
Q ss_pred CCcceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 157 PSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 157 ~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
++|+.|+++++ .+..+|. ..++|+.|++.++.
T Consensus 382 ~~L~~LdLs~N-~Lt~LP~---l~s~L~~LdLS~N~ 413 (788)
T PRK15387 382 SGLKELIVSGN-RLTSLPV---LPSELKELMVSGNR 413 (788)
T ss_pred cccceEEecCC-cccCCCC---cccCCCEEEccCCc
Confidence 46777888776 4555664 23567888877754
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.74 E-value=2e-06 Score=74.12 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=28.9
Q ss_pred cCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCCCchhhch
Q 045852 155 KFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIEKLFYLLI 199 (211)
Q Consensus 155 ~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~~l~~~~~ 199 (211)
-|+.|+.|.+... ++..+|+++..++.|+.|++.+.++|..++.
T Consensus 337 RC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 337 RCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 3566666666433 5566777777677777777777777765543
No 22
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=1.8e-06 Score=68.16 Aligned_cols=116 Identities=21% Similarity=0.210 Sum_probs=67.2
Q ss_pred hhhcCCccEEecccCccccccCCC-C-CCCCCccEEeeccCcc-chhccchHHHhccCCCcEEEEeecCCCcEEeccccC
Q 045852 45 NTVFQNLETLSAHFCLNLTNLMPS-S-ASFRCLTKLRVWACEH-LINLVASSAAKNLVQLVHVSVSECSKITELVVASEG 121 (211)
Q Consensus 45 ~~~l~~L~~L~l~~c~~l~~l~~~-~-~~l~~L~~L~l~~c~~-l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 121 (211)
...+..|++|+++.|..-++.... + .--++|+.|++++|.. +..-...-...++|+|-+|++++|..++.-++.
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~--- 332 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ--- 332 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH---
Confidence 345555566665555433322110 1 1126778888887753 221111224568999999999999866543121
Q ss_pred CCCCCccCCCccceeeccccccccccccCcccccCCCcceeeeccCC
Q 045852 122 DAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACP 168 (211)
Q Consensus 122 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 168 (211)
.-..|+.|++|+++.|=.+.--.. ......|+|.+|++.+|-
T Consensus 333 ----~~~kf~~L~~lSlsRCY~i~p~~~-~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 333 ----EFFKFNYLQHLSLSRCYDIIPETL-LELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ----HHHhcchheeeehhhhcCCChHHe-eeeccCcceEEEEecccc
Confidence 112389999999999843211000 123356999999999884
No 23
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.67 E-value=2.4e-05 Score=67.09 Aligned_cols=135 Identities=19% Similarity=0.146 Sum_probs=64.5
Q ss_pred hhcCCccEEecccCccccccC-CCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecC--------------
Q 045852 46 TVFQNLETLSAHFCLNLTNLM-PSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECS-------------- 110 (211)
Q Consensus 46 ~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~-------------- 110 (211)
.++.+|+.|+++. ..+..+. .++...|+|+.|++++ ..++.+.+. ....+.+|++|.++.-.
T Consensus 290 fgLt~L~~L~lS~-NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~-sf~~L~~Le~LnLs~Nsi~~l~e~af~~lss 366 (873)
T KOG4194|consen 290 FGLTSLEQLDLSY-NAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEG-SFRVLSQLEELNLSHNSIDHLAEGAFVGLSS 366 (873)
T ss_pred cccchhhhhccch-hhhheeecchhhhcccceeEeccc-cccccCChh-HHHHHHHhhhhcccccchHHHHhhHHHHhhh
Confidence 3455666666643 2233222 3455677888888876 344444332 22344444544443211
Q ss_pred ---------CCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCC
Q 045852 111 ---------KITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAP 181 (211)
Q Consensus 111 ---------~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~ 181 (211)
.+.+. +.+ + +..-..+++|+.|.+.+- +++.++.. -+..++.|++|++.+.+-...-+..+. ..
T Consensus 367 L~~LdLr~N~ls~~-IED-a--a~~f~gl~~LrkL~l~gN-qlk~I~kr-Afsgl~~LE~LdL~~NaiaSIq~nAFe-~m 439 (873)
T KOG4194|consen 367 LHKLDLRSNELSWC-IED-A--AVAFNGLPSLRKLRLTGN-QLKSIPKR-AFSGLEALEHLDLGDNAIASIQPNAFE-PM 439 (873)
T ss_pred hhhhcCcCCeEEEE-Eec-c--hhhhccchhhhheeecCc-eeeecchh-hhccCcccceecCCCCcceeecccccc-cc
Confidence 12121 111 0 000112566666666653 55655543 233457777777776654443333332 23
Q ss_pred CccEEEecc
Q 045852 182 RLKEVCLND 190 (211)
Q Consensus 182 ~L~~l~i~~ 190 (211)
.|++|++..
T Consensus 440 ~Lk~Lv~nS 448 (873)
T KOG4194|consen 440 ELKELVMNS 448 (873)
T ss_pred hhhhhhhcc
Confidence 666666543
No 24
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.59 E-value=4.2e-05 Score=65.58 Aligned_cols=98 Identities=22% Similarity=0.177 Sum_probs=40.5
Q ss_pred CccEEEeccccccceecccccCcccccCccEEEEE-----ccCCchhhhcCCccEEecccCccccccCC-CCCCCCCccE
Q 045852 4 NLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLW-----EQNSKLNTVFQNLETLSAHFCLNLTNLMP-SSASFRCLTK 77 (211)
Q Consensus 4 ~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~-----~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~ 77 (211)
+|++|.+.++ .+..+-.. ....++.|++|+++ ..+....+.=.++++|++.+ ..++.+-. ....+.+|..
T Consensus 126 hl~~L~L~~N-~I~sv~se--~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~t 201 (873)
T KOG4194|consen 126 HLEKLDLRHN-LISSVTSE--ELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLT 201 (873)
T ss_pred ceeEEeeecc-ccccccHH--HHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchhee
Confidence 4666777665 34433211 11235556665542 22222323334455555543 23333321 2223334444
Q ss_pred EeeccCccchhccchHHHhccCCCcEEEEe
Q 045852 78 LRVWACEHLINLVASSAAKNLVQLVHVSVS 107 (211)
Q Consensus 78 L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~ 107 (211)
|.+++- .++.++. ...+++++|+.|++.
T Consensus 202 lkLsrN-rittLp~-r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 202 LKLSRN-RITTLPQ-RSFKRLPKLESLDLN 229 (873)
T ss_pred eecccC-cccccCH-HHhhhcchhhhhhcc
Confidence 444442 2232321 122345555555443
No 25
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.58 E-value=0.00024 Score=42.94 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=35.7
Q ss_pred CccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCC-CcCCCCccEEEeccCC
Q 045852 131 PKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGG-VFSAPRLKEVCLNDIE 192 (211)
Q Consensus 131 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~l~i~~c~ 192 (211)
|+|+.|++.++ +++.++.+ .+..+++|++|+++++ +++.++.+ +..+++|++|++.++.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~-~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPD-SFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTT-TTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHH-HHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666665 56665543 2335677777777755 44555543 3456777777777653
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.57 E-value=1.3e-06 Score=63.75 Aligned_cols=154 Identities=18% Similarity=0.127 Sum_probs=93.7
Q ss_pred ccEEEeccccccceecccccCcccccCccEEEEEccC----CchhhhcCCccEEecccCccccccCCCCCCCCCccEEee
Q 045852 5 LEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQN----SKLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRV 80 (211)
Q Consensus 5 Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~----~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l 80 (211)
...|.+++. .++.+.++- ..+.+|+.|++++.. ...++.+|+|+.|++ ++.++..++...++||-|..|++
T Consensus 35 ITrLtLSHN-Kl~~vppni---a~l~nlevln~~nnqie~lp~~issl~klr~lnv-gmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 35 ITRLTLSHN-KLTVVPPNI---AELKNLEVLNLSNNQIEELPTSISSLPKLRILNV-GMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhcccC-ceeecCCcH---HHhhhhhhhhcccchhhhcChhhhhchhhhheec-chhhhhcCccccCCCchhhhhhc
Confidence 344445544 444444322 346678888775432 224578999999998 57888888888999999999999
Q ss_pred ccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccCCCcc
Q 045852 81 WACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLC 160 (211)
Q Consensus 81 ~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~ 160 (211)
.+-.--+...| .-.-.+.-|..|++++-+ .+.+ .. ....+.+|+.|.+++- .+-+++.. ...+..|+
T Consensus 110 tynnl~e~~lp-gnff~m~tlralyl~dnd-fe~l-p~-------dvg~lt~lqil~lrdn-dll~lpke--ig~lt~lr 176 (264)
T KOG0617|consen 110 TYNNLNENSLP-GNFFYMTTLRALYLGDND-FEIL-PP-------DVGKLTNLQILSLRDN-DLLSLPKE--IGDLTRLR 176 (264)
T ss_pred cccccccccCC-cchhHHHHHHHHHhcCCC-cccC-Ch-------hhhhhcceeEEeeccC-chhhCcHH--HHHHHHHH
Confidence 87542222222 112234445555554432 2222 22 1233778888888764 34455553 33458899
Q ss_pred eeeeccCCCCeeccCCC
Q 045852 161 DLSVSACPKMKIFCGGV 177 (211)
Q Consensus 161 ~L~i~~c~~l~~l~~~~ 177 (211)
+|+|.+. +++.+|...
T Consensus 177 elhiqgn-rl~vlppel 192 (264)
T KOG0617|consen 177 ELHIQGN-RLTVLPPEL 192 (264)
T ss_pred HHhcccc-eeeecChhh
Confidence 9999987 677777654
No 27
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.56 E-value=4.5e-06 Score=72.03 Aligned_cols=115 Identities=25% Similarity=0.179 Sum_probs=69.5
Q ss_pred hhcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCC
Q 045852 46 TVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAAN 125 (211)
Q Consensus 46 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 125 (211)
..+.+|++|++++ ..++.++..+..+++|++|.+.+ .++..-..++.++++.+|+.+...+- .++-+ ..
T Consensus 265 ~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN-~LElV-PE------- 333 (1255)
T KOG0444|consen 265 GEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANN-KLELV-PE------- 333 (1255)
T ss_pred HHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhcc-ccccC-ch-------
Confidence 3455666666654 34555555666777777776655 34444444556677777776544432 12222 11
Q ss_pred CccCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeecc
Q 045852 126 DEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFC 174 (211)
Q Consensus 126 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~ 174 (211)
+.-.+++|+.|.+. |..|..++.+. .-++.|+.|++++.|++---|
T Consensus 334 glcRC~kL~kL~L~-~NrLiTLPeaI--HlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 334 GLCRCVKLQKLKLD-HNRLITLPEAI--HLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhhHHHHHhccc-ccceeechhhh--hhcCCcceeeccCCcCccCCC
Confidence 11226788888876 45666666542 235899999999999987433
No 28
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.55 E-value=4.4e-05 Score=69.76 Aligned_cols=124 Identities=23% Similarity=0.263 Sum_probs=88.7
Q ss_pred hhcCCccEEecccCccccccCC-----CCCC-CCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccc
Q 045852 46 TVFQNLETLSAHFCLNLTNLMP-----SSAS-FRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVAS 119 (211)
Q Consensus 46 ~~l~~L~~L~l~~c~~l~~l~~-----~~~~-l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~ 119 (211)
..+++|+.|.|.+|...+.... .... |+++..+.+.+|..++++. +....|+|+.|.+..|..++++ .+.
T Consensus 714 ~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~---~~~f~~~L~~l~l~~~~~~e~~-i~~ 789 (889)
T KOG4658|consen 714 GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT---WLLFAPHLTSLSLVSCRLLEDI-IPK 789 (889)
T ss_pred ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc---hhhccCcccEEEEecccccccC-CCH
Confidence 4567888888888865442211 1122 6677788888888877776 4457899999999999998888 433
Q ss_pred cCCCC---CCccCCCcccee-eccccccccccccCcccccCCCcceeeeccCCCCeeccC
Q 045852 120 EGDAA---NDEIIFPKLGYL-ELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCG 175 (211)
Q Consensus 120 ~~~~~---~~~~~~~~L~~L-~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~ 175 (211)
+.... .....|+++..+ .+.+.+.+..+++. ...++.|+.+.+..||++..+|.
T Consensus 790 ~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~--~l~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 790 LKALLELKELILPFNKLEGLRMLCSLGGLPQLYWL--PLSFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred HHHhhhcccEEecccccccceeeecCCCCceeEec--ccCccchhheehhcCcccccCcc
Confidence 22111 113458888888 58888888888774 55678899999999999988774
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.47 E-value=0.00022 Score=52.86 Aligned_cols=101 Identities=22% Similarity=0.181 Sum_probs=27.2
Q ss_pred CccEEEeccccccceecccccCcccccCccEEEEEccCC---chhhhcCCccEEecccCccccccCCCC-CCCCCccEEe
Q 045852 4 NLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNS---KLNTVFQNLETLSAHFCLNLTNLMPSS-ASFRCLTKLR 79 (211)
Q Consensus 4 ~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~---~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~ 79 (211)
++++|+++++ .++.+-.- ...+.+|+.|+++...- .....+++|++|.+++ ..++.+.+.. ..+|+|++|+
T Consensus 20 ~~~~L~L~~n-~I~~Ie~L---~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGN-QISTIENL---GATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -----------------S-----TT-TT--EEE-TTS--S--TT----TT--EEE--S-S---S-CHHHHHH-TT--EEE
T ss_pred cccccccccc-ccccccch---hhhhcCCCEEECCCCCCccccCccChhhhhhcccCC-CCCCccccchHHhCCcCCEEE
Confidence 4566777776 55555311 11356777777644322 2334566777777754 3455443222 2467777777
Q ss_pred eccCccchhccchHHHhccCCCcEEEEeecC
Q 045852 80 VWACEHLINLVASSAAKNLVQLVHVSVSECS 110 (211)
Q Consensus 80 l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 110 (211)
+++ ..+.++........+++|+.|++.+.+
T Consensus 95 L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 95 LSN-NKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -TT-S---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred CcC-CcCCChHHhHHHHcCCCcceeeccCCc
Confidence 765 233333322234567777777776554
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.44 E-value=0.00023 Score=43.04 Aligned_cols=58 Identities=28% Similarity=0.296 Sum_probs=29.7
Q ss_pred CCccEEecccCccccccCC-CCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeec
Q 045852 49 QNLETLSAHFCLNLTNLMP-SSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSEC 109 (211)
Q Consensus 49 ~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 109 (211)
|+|++|.++++ +++.+++ ....+++|++|+++++ .++.+.+ .....+++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPP-DAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEET-TTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCH-HHHcCCCCCCEEeCcCC
Confidence 35566666655 5555543 2334566666666643 3343332 12345566666655554
No 31
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.38 E-value=6.9e-05 Score=66.81 Aligned_cols=104 Identities=22% Similarity=0.248 Sum_probs=59.6
Q ss_pred CCccEEEeccccccceecccccCcccccCccEEEEEccCC------chhhhcCCccEEecccCccccccCCCCCCCCCcc
Q 045852 3 PNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNS------KLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLT 76 (211)
Q Consensus 3 ~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~------~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~ 76 (211)
++|+.|+|+|...+..-|.... ...+|.|++|.+.+... .....||+|..|+|+++ +++.+ ..+.++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~ki-g~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKI-GTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHH-hhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHH
Confidence 3677777776544433332211 13577888887755322 12356788888888776 45444 4556677777
Q ss_pred EEeeccCccchhccchHHHhccCCCcEEEEeecC
Q 045852 77 KLRVWACEHLINLVASSAAKNLVQLVHVSVSECS 110 (211)
Q Consensus 77 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 110 (211)
.|.+.+..-... .....+-++.+|+.|||+.=.
T Consensus 199 ~L~mrnLe~e~~-~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 199 VLSMRNLEFESY-QDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHhccCCCCCch-hhHHHHhcccCCCeeeccccc
Confidence 776666543321 111133467788888877543
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.34 E-value=9.1e-05 Score=54.83 Aligned_cols=130 Identities=22% Similarity=0.187 Sum_probs=45.0
Q ss_pred cccCccEEEEEccCCc---hh-hhcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcE
Q 045852 28 LLNKLEHLWLWEQNSK---LN-TVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVH 103 (211)
Q Consensus 28 ~~~~Lk~L~l~~~~~~---~~-~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 103 (211)
+..++++|++.+..-. .. ..+.+|+.|+++++ .++.+ +.+..+++|+.|++++ ..++++.. .....+|+|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N-~I~~l-~~l~~L~~L~~L~L~~-N~I~~i~~-~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNN-QITKL-EGLPGLPRLKTLDLSN-NRISSISE-GLDKNLPNLQE 92 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---S---TT----TT--EEE--S-S---S-CH-HHHHH-TT--E
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCC-CCccc-cCccChhhhhhcccCC-CCCCcccc-chHHhCCcCCE
Confidence 4557888887543322 22 35788999999886 56655 4567789999999988 45666542 12357999999
Q ss_pred EEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccc-cccCcccccCCCcceeeeccCC
Q 045852 104 VSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTT-FCSANYTFKFPSLCDLSVSACP 168 (211)
Q Consensus 104 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~~~L~~L~i~~c~ 168 (211)
|++++-. +.++ - . ...-..+|+|+.|++.+.|--.. -+.......+|+|+.|+-....
T Consensus 93 L~L~~N~-I~~l-~----~-l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 93 LYLSNNK-ISDL-N----E-LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp EE-TTS----SC-C----C-CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred EECcCCc-CCCh-H----H-hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 9997543 4333 1 0 11233589999999998763211 0000112356777777655443
No 33
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.25 E-value=7.5e-05 Score=63.55 Aligned_cols=140 Identities=21% Similarity=0.227 Sum_probs=81.8
Q ss_pred hcCCccEEecccCccccc--cCCCCCCCCCccEEeeccC-ccchhcc--chHHHhccCCCcEEEEeecCCCcEEeccccC
Q 045852 47 VFQNLETLSAHFCLNLTN--LMPSSASFRCLTKLRVWAC-EHLINLV--ASSAAKNLVQLVHVSVSECSKITELVVASEG 121 (211)
Q Consensus 47 ~l~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~c-~~l~~~~--~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 121 (211)
..++|+.|.+.+|..+.+ +.+....+++|+.|++++| ....... .......+++|+.+++.+|..+.+.-+..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~-- 263 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA-- 263 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH--
Confidence 467777887777777776 3345556778888887773 2222221 12234456777888887777654431110
Q ss_pred CCCCCccCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCee--ccCCCcCCCCccEEEeccCC
Q 045852 122 DAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKI--FCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 122 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~--l~~~~~~~~~L~~l~i~~c~ 192 (211)
-....++|+.|.+.+|+.+++-........+++|++|+++.|..++. +......+++++.+.+..+.
T Consensus 264 ----l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 264 ----LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN 332 (482)
T ss_pred ----HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC
Confidence 01126778888877787766544443455678888888888877633 21112234655555554444
No 34
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.14 E-value=0.00021 Score=63.81 Aligned_cols=39 Identities=13% Similarity=0.079 Sum_probs=17.5
Q ss_pred CCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecC
Q 045852 71 SFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECS 110 (211)
Q Consensus 71 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 110 (211)
.||+|+.|.+.+-.-..+-+ ...+.++|+|..|||++++
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF-~~lc~sFpNL~sLDIS~Tn 184 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDF-SQLCASFPNLRSLDISGTN 184 (699)
T ss_pred hCcccceEEecCceecchhH-HHHhhccCccceeecCCCC
Confidence 35555555555422211111 1133455555555555553
No 35
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.10 E-value=6.1e-05 Score=67.49 Aligned_cols=131 Identities=21% Similarity=0.179 Sum_probs=72.2
Q ss_pred cCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCc
Q 045852 48 FQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDE 127 (211)
Q Consensus 48 l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~ 127 (211)
++.|+.|.+.+-.--...+|.+.++++||.|++++- .+..+ |.+...+++.||+|++++-. ++.+ .+ ..
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~f-pas~~~kle~LeeL~LSGNk-L~~L-p~-------tv 426 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSF-PASKLRKLEELEELNLSGNK-LTTL-PD-------TV 426 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccC-CHHHHhchHHhHHHhcccch-hhhh-hH-------HH
Confidence 344555555443222234577788999999999984 44443 45566789999999888643 5555 21 11
Q ss_pred cCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCC-CCccEEEeccCCCc
Q 045852 128 IIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSA-PRLKEVCLNDIEKL 194 (211)
Q Consensus 128 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~-~~L~~l~i~~c~~l 194 (211)
..++.|+.|...+- .+..++ .....+.|+.++++.. +++......... |+|++|++.+..++
T Consensus 427 a~~~~L~tL~ahsN-~l~~fP---e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHSN-QLLSFP---ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred HhhhhhHHHhhcCC-ceeech---hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCccc
Confidence 22455555544321 233333 1334566666666543 444322111122 67777777776643
No 36
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.88 E-value=6.2e-05 Score=67.46 Aligned_cols=123 Identities=25% Similarity=0.307 Sum_probs=78.6
Q ss_pred ccEEEeccccccceecccccCcccccCccEEEEE-----ccCCchhhhcCCccEEecccCccccccCCCCCCCCCccEEe
Q 045852 5 LEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLW-----EQNSKLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLR 79 (211)
Q Consensus 5 Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~-----~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~ 79 (211)
|+.|++.++ .+++-.- ....++++||.|++. .+|.....++..||+|++++ .+++.++..+..++.|+.|.
T Consensus 361 Lq~LylanN-~Ltd~c~--p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 361 LQELYLANN-HLTDSCF--PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLR 436 (1081)
T ss_pred HHHHHHhcC-cccccch--hhhccccceeeeeecccccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHh
Confidence 445555554 3333210 123468899999873 36666677888899999987 57888877777778888876
Q ss_pred eccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeecccccc
Q 045852 80 VWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQS 143 (211)
Q Consensus 80 l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 143 (211)
..+ ..+..++ -...+++|+.+|++ |+++.++... +. ..-|+|++|++++-+.
T Consensus 437 ahs-N~l~~fP---e~~~l~qL~~lDlS-~N~L~~~~l~-~~------~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 437 AHS-NQLLSFP---ELAQLPQLKVLDLS-CNNLSEVTLP-EA------LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hcC-Cceeech---hhhhcCcceEEecc-cchhhhhhhh-hh------CCCcccceeeccCCcc
Confidence 654 2333333 45678888888885 6667666221 00 0136788888887654
No 37
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.44 E-value=0.0027 Score=35.67 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=14.4
Q ss_pred CccEEecccCccccccCCCCCCCCCccEEeeccC
Q 045852 50 NLETLSAHFCLNLTNLMPSSASFRCLTKLRVWAC 83 (211)
Q Consensus 50 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 83 (211)
+|++|.+++. +++++++.+..+++|+.|+++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence 3445555443 34444333444555555555544
No 38
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.00049 Score=51.54 Aligned_cols=69 Identities=20% Similarity=0.288 Sum_probs=37.2
Q ss_pred hccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCe
Q 045852 96 KNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMK 171 (211)
Q Consensus 96 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~ 171 (211)
.+++.++.|.+.+|.++.++....-+ ..+++|+.|++++|+++++.... ....+++|+.|.+.+.|...
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~------~~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLG------GLAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhc------ccccchheeeccCCCeechhHHH-HHHHhhhhHHHHhcCchhhh
Confidence 35555666666666655443221111 13666666666666666654432 23455666666666666543
No 39
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.016 Score=46.30 Aligned_cols=180 Identities=23% Similarity=0.243 Sum_probs=93.4
Q ss_pred CCCccEEEeccccccceec-ccccCcccccCccEEEEEccCC------chhhhcCCccEEecccCccccccC---C-CCC
Q 045852 2 LPNLEELRLSKNKDIAKIW-QGPFTDHLLNKLEHLWLWEQNS------KLNTVFQNLETLSAHFCLNLTNLM---P-SSA 70 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~-~~~~~~~~~~~Lk~L~l~~~~~------~~~~~l~~L~~L~l~~c~~l~~l~---~-~~~ 70 (211)
+|.|+.|+++.+ .+.... ..+. ...+|+.|-+.+... .....+|.+++|+++.- ++..+- . ...
T Consensus 96 lP~l~~LNls~N-~L~s~I~~lp~---p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N-~~rq~n~Dd~c~e~ 170 (418)
T KOG2982|consen 96 LPALTTLNLSCN-SLSSDIKSLPL---PLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN-SLRQLNLDDNCIED 170 (418)
T ss_pred CccceEeeccCC-cCCCccccCcc---cccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc-hhhhhccccccccc
Confidence 567777777765 333322 1111 245666666644332 12345666666665442 111110 0 001
Q ss_pred CCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccC
Q 045852 71 SFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSA 150 (211)
Q Consensus 71 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 150 (211)
--+-+++|+.-.|........-.....+|++..+-+..|+ ++.. -..++. ..||.+..|.+.. .++.+|..-
T Consensus 171 ~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~-s~ek~s-----e~~p~~~~LnL~~-~~idswasv 242 (418)
T KOG2982|consen 171 WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTE-SSEKGS-----EPFPSLSCLNLGA-NNIDSWASV 242 (418)
T ss_pred cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccch-hhcccC-----CCCCcchhhhhcc-cccccHHHH
Confidence 1235666666677655444322244678999988888876 4443 222222 2355555444432 234444443
Q ss_pred cccccCCCcceeeeccCCCCeeccCCCc---CCCCccEEEeccCCCc
Q 045852 151 NYTFKFPSLCDLSVSACPKMKIFCGGVF---SAPRLKEVCLNDIEKL 194 (211)
Q Consensus 151 ~~~~~~~~L~~L~i~~c~~l~~l~~~~~---~~~~L~~l~i~~c~~l 194 (211)
...-.||+|..|.+.+-|-...+..+.. -..+|.++.+-|-.+.
T Consensus 243 D~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskI 289 (418)
T KOG2982|consen 243 DALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKI 289 (418)
T ss_pred HHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCccc
Confidence 3344689999999998887665544321 1255666666665554
No 40
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.16 E-value=4.5e-05 Score=62.66 Aligned_cols=118 Identities=19% Similarity=0.207 Sum_probs=62.6
Q ss_pred ccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccc-------
Q 045852 62 LTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLG------- 134 (211)
Q Consensus 62 l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~------- 134 (211)
+..+++..+.+.+|..+.+.+ ..++.+++ ..-++..|++++. |+++-+......|. +.+|.
T Consensus 149 i~slp~~~~~~~~l~~l~~~~-n~l~~l~~--~~i~m~~L~~ld~--~~N~L~tlP~~lg~-------l~~L~~LyL~~N 216 (565)
T KOG0472|consen 149 ISSLPEDMVNLSKLSKLDLEG-NKLKALPE--NHIAMKRLKHLDC--NSNLLETLPPELGG-------LESLELLYLRRN 216 (565)
T ss_pred cccCchHHHHHHHHHHhhccc-cchhhCCH--HHHHHHHHHhccc--chhhhhcCChhhcc-------hhhhHHHHhhhc
Confidence 333444455556666666655 33444443 2223667777643 33332221222121 11111
Q ss_pred ---ee-eccccccccccccCcc---------cccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 135 ---YL-ELHRLQSLTTFCSANY---------TFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 135 ---~L-~l~~c~~l~~~~~~~~---------~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
++ ++.+|.-++++..|.. ..+++++..|++++. +++++|++.+-+.+|++|++.|..
T Consensus 217 ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 217 KIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred ccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCc
Confidence 11 3344555555554421 125677777777776 788888888777888888887754
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.05 E-value=0.0014 Score=52.29 Aligned_cols=59 Identities=19% Similarity=0.090 Sum_probs=41.6
Q ss_pred hhcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeec
Q 045852 46 TVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSEC 109 (211)
Q Consensus 46 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 109 (211)
.-++.|+++++++ ..++++..+..-.|.++.|+++.- .+..+. ..+.+++|..|++++-
T Consensus 281 dTWq~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~---nLa~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 281 DTWQELTELDLSG-NLITQIDESVKLAPKLRRLILSQN-RIRTVQ---NLAELPQLQLLDLSGN 339 (490)
T ss_pred chHhhhhhccccc-cchhhhhhhhhhccceeEEecccc-ceeeeh---hhhhcccceEeecccc
Confidence 4567788888876 356666667777888899988874 344443 3567888888888753
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.89 E-value=0.012 Score=49.16 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=22.6
Q ss_pred cCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccC
Q 045852 155 KFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDI 191 (211)
Q Consensus 155 ~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c 191 (211)
..+++++|.+.++ .+..++. .....+++.+++.+-
T Consensus 253 ~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 253 NLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred cccccceeccccc-ccccccc-ccccCccCEEeccCc
Confidence 3466778887777 4454544 455677777777663
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.85 E-value=0.0093 Score=33.47 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=14.8
Q ss_pred ccceeeccccccccccccCcccccCCCcceeeeccC
Q 045852 132 KLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSAC 167 (211)
Q Consensus 132 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c 167 (211)
+|+.|++.+. .+++++. ....+++|+.|+++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~--~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPP--ELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SSHGG--HGTTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcccCc--hHhCCCCCCEEEecCC
Confidence 4555555544 3344332 1234555555555555
No 44
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=0.0015 Score=49.05 Aligned_cols=69 Identities=22% Similarity=0.288 Sum_probs=51.6
Q ss_pred CCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccC-CCcCCCCccEEEeccCCCchhh
Q 045852 129 IFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCG-GVFSAPRLKEVCLNDIEKLFYL 197 (211)
Q Consensus 129 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~l~i~~c~~l~~~ 197 (211)
.++.++.|++.+|..+.+|+.+......|+|+.|++++||++++--- .+..+++|+.|++.+-+.....
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhch
Confidence 37788899999999999988765444679999999999999875211 1234588888888876654443
No 45
>PLN03150 hypothetical protein; Provisional
Probab=95.36 E-value=0.046 Score=48.72 Aligned_cols=65 Identities=15% Similarity=0.058 Sum_probs=45.8
Q ss_pred hhhhcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecC
Q 045852 44 LNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECS 110 (211)
Q Consensus 44 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 110 (211)
....+++|+.|+++++.--..++.....+++|+.|+++++.--..++. ...++++|+.|+++++.
T Consensus 437 ~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~--~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE--SLGQLTSLRILNLNGNS 501 (623)
T ss_pred HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch--HHhcCCCCCEEECcCCc
Confidence 346778899999887643334555677888999999988753333332 46788899999888765
No 46
>PLN03150 hypothetical protein; Provisional
Probab=95.12 E-value=0.047 Score=48.67 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=16.2
Q ss_pred CCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeec
Q 045852 69 SASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSEC 109 (211)
Q Consensus 69 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 109 (211)
+..+++|+.|+++++.--..++. ....+++|+.|+++++
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~--~~~~l~~L~~LdLs~N 476 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPP--SLGSITSLEVLDLSYN 476 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCCh--HHhCCCCCCEEECCCC
Confidence 33445555555554322112211 2344555555555444
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.91 E-value=0.006 Score=48.70 Aligned_cols=118 Identities=16% Similarity=0.140 Sum_probs=62.3
Q ss_pred hhhhcCCccEEecccCccccccCCCC-CCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCC
Q 045852 44 LNTVFQNLETLSAHFCLNLTNLMPSS-ASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGD 122 (211)
Q Consensus 44 ~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 122 (211)
+...+|.|+.|+++ |..+.....+. ....+|+.|.+.+. .+......+....+|.++.+.++.- +++.+-.+++-
T Consensus 92 ile~lP~l~~LNls-~N~L~s~I~~lp~p~~nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N-~~rq~n~Dd~c- 167 (418)
T KOG2982|consen 92 ILEQLPALTTLNLS-CNSLSSDIKSLPLPLKNLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDN-SLRQLNLDDNC- 167 (418)
T ss_pred HHhcCccceEeecc-CCcCCCccccCcccccceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhccc-hhhhhcccccc-
Confidence 34678999999994 65555433333 23457888888763 3433333345567777777766532 22232111111
Q ss_pred CCCCccCCCccceeeccccccccccccCcccccCCCcceeeeccCC
Q 045852 123 AANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACP 168 (211)
Q Consensus 123 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 168 (211)
....-+.++.++...|+............-||++..+.+.+||
T Consensus 168 ---~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 168 ---IEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred ---ccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 1112445666666666543221111123346777777776665
No 48
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.03 E-value=0.037 Score=24.23 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=6.8
Q ss_pred CcceeeeccCCCCeecc
Q 045852 158 SLCDLSVSACPKMKIFC 174 (211)
Q Consensus 158 ~L~~L~i~~c~~l~~l~ 174 (211)
+|+.|++++|. ++.+|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 45666666664 44443
No 49
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.88 E-value=0.02 Score=47.60 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=26.5
Q ss_pred CCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecC
Q 045852 69 SASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECS 110 (211)
Q Consensus 69 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 110 (211)
...+.+|+.|++.+ .++..+++ ..++|++|++|++++-+
T Consensus 501 l~nm~nL~tLDL~n-Ndlq~IPp--~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQN-NDLQQIPP--ILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhhhhcceeccCC-CchhhCCh--hhccccceeEEEecCCc
Confidence 45567777777776 45556665 66777777777777654
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.08 E-value=0.063 Score=41.91 Aligned_cols=103 Identities=17% Similarity=0.117 Sum_probs=50.6
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccCC------c-hhhhcCCccEEecccCccccccC--CCCCCC
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNS------K-LNTVFQNLETLSAHFCLNLTNLM--PSSASF 72 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~------~-~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l 72 (211)
|.+|+.|.+.++ +++.+- ....+++||.|.+++... . ....+|+|+++++++ .++..+. +.+..+
T Consensus 42 ~~~le~ls~~n~-gltt~~----~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 42 FVELELLSVINV-GLTTLT----NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKEL 115 (260)
T ss_pred ccchhhhhhhcc-ceeecc----cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchhhhh
Confidence 344555555544 333332 112456677776643211 1 123447777777654 2333221 334456
Q ss_pred CCccEEeeccCccchhcc-chHHHhccCCCcEEEEeecC
Q 045852 73 RCLTKLRVWACEHLINLV-ASSAAKNLVQLVHVSVSECS 110 (211)
Q Consensus 73 ~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~i~~c~ 110 (211)
++|..|++.+|+....-. -..+..-+++|.+|+-..+.
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 667777777775433211 12234456677776655554
No 51
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=92.79 E-value=0.023 Score=45.55 Aligned_cols=124 Identities=17% Similarity=0.110 Sum_probs=65.4
Q ss_pred cCccEEEEEccC----CchhhhcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEE
Q 045852 30 NKLEHLWLWEQN----SKLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVS 105 (211)
Q Consensus 30 ~~Lk~L~l~~~~----~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 105 (211)
..|+.++++... .....-+|.++.|++++ ..+..+ ..+..+++|..|++++-. +..... +..++-+.++|.
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~-N~i~~v-~nLa~L~~L~~LDLS~N~-Ls~~~G--wh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQ-NRIRTV-QNLAELPQLQLLDLSGNL-LAECVG--WHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccc-cceeee-hhhhhcccceEeecccch-hHhhhh--hHhhhcCEeeee
Confidence 355555553211 12345678888888865 344444 336677888888888743 333322 445677777777
Q ss_pred EeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccCCCcceeeeccCCC
Q 045852 106 VSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPK 169 (211)
Q Consensus 106 i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~ 169 (211)
+++-. ++.+ + +-..+-+|.+|++++- +++.+..-.....+|.|+++.+.+.|-
T Consensus 359 La~N~-iE~L--S-------GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 359 LAQNK-IETL--S-------GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhh-Hhhh--h-------hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCc
Confidence 65432 2222 0 1111334555555432 122221111233568888888888773
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.30 E-value=0.063 Score=41.91 Aligned_cols=81 Identities=17% Similarity=0.137 Sum_probs=45.4
Q ss_pred ccCccEEEEEccCCc---hhhhcCCccEEecccCc-ccc-ccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcE
Q 045852 29 LNKLEHLWLWEQNSK---LNTVFQNLETLSAHFCL-NLT-NLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVH 103 (211)
Q Consensus 29 ~~~Lk~L~l~~~~~~---~~~~l~~L~~L~l~~c~-~l~-~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 103 (211)
+..|+.+++.+.... ....+|+|++|.+++-. .+. .+...+..+|+|+++.+++- +++.+........+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchhh
Confidence 445555554443322 33456778888875421 111 12233445588888888763 3443333334567777888
Q ss_pred EEEeecC
Q 045852 104 VSVSECS 110 (211)
Q Consensus 104 L~i~~c~ 110 (211)
|+..+|.
T Consensus 121 Ldl~n~~ 127 (260)
T KOG2739|consen 121 LDLFNCS 127 (260)
T ss_pred hhcccCC
Confidence 8888776
No 53
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.83 E-value=0.12 Score=24.12 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=11.5
Q ss_pred CcceeeeccCCCCeeccCC
Q 045852 158 SLCDLSVSACPKMKIFCGG 176 (211)
Q Consensus 158 ~L~~L~i~~c~~l~~l~~~ 176 (211)
+|++|++++| +++.+|.+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp TESEEEETSS-EESEEGTT
T ss_pred CccEEECCCC-cCEeCChh
Confidence 3666777777 66666654
No 54
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.69 E-value=0.0069 Score=47.91 Aligned_cols=78 Identities=21% Similarity=0.175 Sum_probs=41.5
Q ss_pred ccCccEEEEEccCCch---hhhcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEE
Q 045852 29 LNKLEHLWLWEQNSKL---NTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVS 105 (211)
Q Consensus 29 ~~~Lk~L~l~~~~~~~---~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 105 (211)
+.+.+.|+.|+.+... ..+++.||.|.++ ..+++.+ ..+..|.+|++|++.. ..+.++......+++|+|..|+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLS-vNkIssL-~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLS-VNKISSL-APLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEee-ccccccc-hhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHh
Confidence 4455666666655543 2456666766663 3444443 3345566666666653 2233333223456667777766
Q ss_pred Eeec
Q 045852 106 VSEC 109 (211)
Q Consensus 106 i~~c 109 (211)
+..-
T Consensus 95 L~EN 98 (388)
T KOG2123|consen 95 LDEN 98 (388)
T ss_pred hccC
Confidence 6543
No 55
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=91.69 E-value=0.14 Score=42.81 Aligned_cols=156 Identities=22% Similarity=0.209 Sum_probs=79.7
Q ss_pred CCccEEEeccccccceecccccCcccc-cCccEEEEEccCCc----hhhhcCCccEEecccCccccccCCCCCCCCCccE
Q 045852 3 PNLEELRLSKNKDIAKIWQGPFTDHLL-NKLEHLWLWEQNSK----LNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTK 77 (211)
Q Consensus 3 ~~Le~L~l~~~~~l~~i~~~~~~~~~~-~~Lk~L~l~~~~~~----~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~ 77 (211)
+.++.|.+.+. ++.++.... ..+ ++|+.|++..-... ....+++|+.|.+.++ .+.++++.....+.|+.
T Consensus 116 ~~l~~L~l~~n-~i~~i~~~~---~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 116 TNLTSLDLDNN-NITDIPPLI---GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNN 190 (394)
T ss_pred cceeEEecCCc-ccccCcccc---ccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhh
Confidence 34666666665 555554221 234 27888877443221 3466788888888775 46666554446777777
Q ss_pred EeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEe-ccc------cC-----CC--CCCccCCCccceeecccccc
Q 045852 78 LRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELV-VAS------EG-----DA--ANDEIIFPKLGYLELHRLQS 143 (211)
Q Consensus 78 L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~-~~~------~~-----~~--~~~~~~~~~L~~L~l~~c~~ 143 (211)
|++++. .++.++. ......+|+++.+.+-..++.+. ... .+ .. .......+.++.|.+.+. .
T Consensus 191 L~ls~N-~i~~l~~--~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n-~ 266 (394)
T COG4886 191 LDLSGN-KISDLPP--EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN-Q 266 (394)
T ss_pred eeccCC-ccccCch--hhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccc-c
Confidence 777763 3444442 11233445655555432111100 000 00 00 011122455777776654 3
Q ss_pred ccccccCcccccCCCcceeeeccCCCC
Q 045852 144 LTTFCSANYTFKFPSLCDLSVSACPKM 170 (211)
Q Consensus 144 l~~~~~~~~~~~~~~L~~L~i~~c~~l 170 (211)
++++.. .....+++.+++.+-...
T Consensus 267 i~~i~~---~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 267 ISSISS---LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccccc---ccccCccCEEeccCcccc
Confidence 344332 334578888888775443
No 56
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=91.58 E-value=0.11 Score=25.33 Aligned_cols=19 Identities=16% Similarity=0.266 Sum_probs=12.6
Q ss_pred CCCccEEeeccCccchhcc
Q 045852 72 FRCLTKLRVWACEHLINLV 90 (211)
Q Consensus 72 l~~L~~L~l~~c~~l~~~~ 90 (211)
+++|++|++++|+.+++..
T Consensus 1 c~~L~~L~l~~C~~itD~g 19 (26)
T smart00367 1 CPNLRELDLSGCTNITDEG 19 (26)
T ss_pred CCCCCEeCCCCCCCcCHHH
Confidence 3667777777777766653
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.02 E-value=0.014 Score=46.16 Aligned_cols=98 Identities=14% Similarity=-0.020 Sum_probs=62.8
Q ss_pred CCccEEEeccccccceecccccCcccccCccEEEEEccC---CchhhhcCCccEEecccCccccccC--CCCCCCCCccE
Q 045852 3 PNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQN---SKLNTVFQNLETLSAHFCLNLTNLM--PSSASFRCLTK 77 (211)
Q Consensus 3 ~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~---~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~ 77 (211)
.+..+|+.-|| ++.+|-.. ..++.|+.|.++... ......+.+|++|.+.. ..+.++- .-+.++|+|+.
T Consensus 19 ~~vkKLNcwg~-~L~DIsic----~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDISIC----EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHhhhhcccCC-CccHHHHH----HhcccceeEEeeccccccchhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhh
Confidence 45567888888 77776422 358899999875422 23456777888887743 1222221 23457899999
Q ss_pred EeeccCccchhccc---hHHHhccCCCcEEEE
Q 045852 78 LRVWACEHLINLVA---SSAAKNLVQLVHVSV 106 (211)
Q Consensus 78 L~l~~c~~l~~~~~---~~~~~~l~~L~~L~i 106 (211)
|++..-+.....++ ...+.-+|+|++|+=
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 99987665555443 235567899998863
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=87.18 E-value=1.4 Score=33.49 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=18.8
Q ss_pred hhcCCccEEecccCccccccCCCCC-CCCCccEEeecc
Q 045852 46 TVFQNLETLSAHFCLNLTNLMPSSA-SFRCLTKLRVWA 82 (211)
Q Consensus 46 ~~l~~L~~L~l~~c~~l~~l~~~~~-~l~~L~~L~l~~ 82 (211)
..++.|.+|.+.. .+++.+.+.+. .+|+|+.|.+.+
T Consensus 61 p~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 61 PHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred CCccccceEEecC-CcceeeccchhhhccccceEEecC
Confidence 4455556665533 45555544433 245566666655
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=81.12 E-value=5.4 Score=27.14 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=39.7
Q ss_pred CccEEEeccccccceecccccCcccccCccEEEEEc----cCCchhhhcCCccEEecccCccccccCCCCC-CCCCccEE
Q 045852 4 NLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWE----QNSKLNTVFQNLETLSAHFCLNLTNLMPSSA-SFRCLTKL 78 (211)
Q Consensus 4 ~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~----~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~l~~L~~L 78 (211)
+|+.+.+.. .++.+....+ ..+.+|+.+.+.. .+......+++++.+.+.+ .+..+..... .+++|+.+
T Consensus 13 ~l~~i~~~~--~~~~I~~~~F--~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 13 NLESITFPN--TIKKIGENAF--SNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T--EEEETS--T--EE-TTTT--TT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEE
T ss_pred CCCEEEECC--CeeEeChhhc--ccccccccccccccccccceeeeecccccccccccc--ccccccccccccccccccc
Confidence 566666653 4555543322 2455777777643 2223445666778888754 4444443333 47788888
Q ss_pred eeccCccchhccchHHHhccCCCcEEEEe
Q 045852 79 RVWACEHLINLVASSAAKNLVQLVHVSVS 107 (211)
Q Consensus 79 ~l~~c~~l~~~~~~~~~~~l~~L~~L~i~ 107 (211)
.+.. .+..+... ...+. +++.+.+.
T Consensus 87 ~~~~--~~~~i~~~-~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 87 DIPS--NITEIGSS-SFSNC-NLKEINIP 111 (129)
T ss_dssp EETT--T-BEEHTT-TTTT--T--EEE-T
T ss_pred ccCc--cccEEchh-hhcCC-CceEEEEC
Confidence 8753 23333321 22344 66665543
No 60
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=79.56 E-value=0.93 Score=37.95 Aligned_cols=76 Identities=32% Similarity=0.419 Sum_probs=46.9
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEc-----cCCchhhhcCCccEEecccCccccccCCC-CCCCCCc
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWE-----QNSKLNTVFQNLETLSAHFCLNLTNLMPS-SASFRCL 75 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~-----~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L 75 (211)
|++|++|+++++ .++.|-++.+. ....++.|.+.. +...+...+..|++|++.+ .+++.+.+. ...+.+|
T Consensus 273 L~~L~~lnlsnN-~i~~i~~~aFe--~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 273 LPNLRKLNLSNN-KITRIEDGAFE--GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSL 348 (498)
T ss_pred cccceEeccCCC-ccchhhhhhhc--chhhhhhhhcCcchHHHHHHHhhhccccceeeeecC-CeeEEEeccccccccee
Confidence 678888888887 77776554332 234566665532 3345667778888888876 355555432 2345566
Q ss_pred cEEeec
Q 045852 76 TKLRVW 81 (211)
Q Consensus 76 ~~L~l~ 81 (211)
..|.+-
T Consensus 349 ~~l~l~ 354 (498)
T KOG4237|consen 349 STLNLL 354 (498)
T ss_pred eeeehc
Confidence 666663
No 61
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=76.32 E-value=0.11 Score=46.68 Aligned_cols=73 Identities=30% Similarity=0.240 Sum_probs=35.0
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEc-----cCCchhhhcCCccEEecccCccccccCCCCCCCCCcc
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWE-----QNSKLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLT 76 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~-----~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~ 76 (211)
++.|+.|+++++ .++++- ....+++|++|+|.- .|.-....+ +|+.|.+.+ ..++.+ ..+.++.+|.
T Consensus 186 l~ale~LnLshN-k~~~v~----~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn-N~l~tL-~gie~LksL~ 257 (1096)
T KOG1859|consen 186 LPALESLNLSHN-KFTKVD----NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN-NALTTL-RGIENLKSLY 257 (1096)
T ss_pred HHHhhhhccchh-hhhhhH----HHHhcccccccccccchhccccccchhhh-hheeeeecc-cHHHhh-hhHHhhhhhh
Confidence 355677777766 444432 123567777777632 111111222 255555544 122222 2334455666
Q ss_pred EEeecc
Q 045852 77 KLRVWA 82 (211)
Q Consensus 77 ~L~l~~ 82 (211)
.|++++
T Consensus 258 ~LDlsy 263 (1096)
T KOG1859|consen 258 GLDLSY 263 (1096)
T ss_pred ccchhH
Confidence 666654
No 62
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=75.91 E-value=1.3 Score=36.36 Aligned_cols=64 Identities=19% Similarity=0.107 Sum_probs=29.2
Q ss_pred hhcCCccEEecccCccc----cccCCCCCCCCCccEEeeccCccchhccch----HHHhccCCCcEEEEeecC
Q 045852 46 TVFQNLETLSAHFCLNL----TNLMPSSASFRCLTKLRVWACEHLINLVAS----SAAKNLVQLVHVSVSECS 110 (211)
Q Consensus 46 ~~l~~L~~L~l~~c~~l----~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~----~~~~~l~~L~~L~i~~c~ 110 (211)
..+++|+.|++.+-.-- ..+......+++|+.|.+++|- ++.-... ..-...|.|+.+.+.++.
T Consensus 210 ~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 210 EHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch
Confidence 45566666666542100 0011234445666666666663 2221111 112245666666666553
No 63
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=75.37 E-value=0.46 Score=41.53 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=9.2
Q ss_pred CCeeccCCCcCCCCccEEEecc
Q 045852 169 KMKIFCGGVFSAPRLKEVCLND 190 (211)
Q Consensus 169 ~l~~l~~~~~~~~~L~~l~i~~ 190 (211)
++..+|..+..+..|+.|-+++
T Consensus 222 kis~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 222 KISYLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred ceeecchhhhhhhhheeeeecc
Confidence 3344444444444444444433
No 64
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=74.61 E-value=2.1 Score=36.18 Aligned_cols=100 Identities=20% Similarity=0.128 Sum_probs=54.8
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccC---CchhhhcCCccEEecccCccccccCCCCCCCCCccEE
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQN---SKLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKL 78 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~---~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L 78 (211)
|++|+.|++.+. +++.+... ...+++|++|+++.-. .+....++.|+.|++.+. .++.+ .....+++|+.+
T Consensus 94 ~~~l~~l~l~~n-~i~~i~~~---l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N-~i~~~-~~~~~l~~L~~l 167 (414)
T KOG0531|consen 94 LKSLEALDLYDN-KIEKIENL---LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGN-LISDI-SGLESLKSLKLL 167 (414)
T ss_pred ccceeeeecccc-chhhcccc---hhhhhcchheeccccccccccchhhccchhhheeccC-cchhc-cCCccchhhhcc
Confidence 566777777776 66665431 2457788888774322 223445566777777654 33332 233346677777
Q ss_pred eeccCccchhccchHHHhccCCCcEEEEeec
Q 045852 79 RVWACEHLINLVASSAAKNLVQLVHVSVSEC 109 (211)
Q Consensus 79 ~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 109 (211)
+++++.... ..... ...+.+++.+++.+.
T Consensus 168 ~l~~n~i~~-ie~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 168 DLSYNRIVD-IENDE-LSELISLEELDLGGN 196 (414)
T ss_pred cCCcchhhh-hhhhh-hhhccchHHHhccCC
Confidence 777654322 21100 245666666665543
No 65
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=74.39 E-value=2.4 Score=20.30 Aligned_cols=20 Identities=50% Similarity=0.783 Sum_probs=15.7
Q ss_pred CCCccEEEeccccccceeccc
Q 045852 2 LPNLEELRLSKNKDIAKIWQG 22 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~ 22 (211)
|++|+.|++.++ +++.+..+
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHH
Confidence 578999999988 78777543
No 66
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=74.39 E-value=2.4 Score=20.30 Aligned_cols=20 Identities=50% Similarity=0.783 Sum_probs=15.7
Q ss_pred CCCccEEEeccccccceeccc
Q 045852 2 LPNLEELRLSKNKDIAKIWQG 22 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~ 22 (211)
|++|+.|++.++ +++.+..+
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHH
Confidence 578999999988 78777543
No 67
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=72.77 E-value=0.65 Score=40.61 Aligned_cols=101 Identities=20% Similarity=0.138 Sum_probs=53.1
Q ss_pred ccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCC
Q 045852 51 LETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIF 130 (211)
Q Consensus 51 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~ 130 (211)
|+.|.+.+ .+++.+++.++..+.|.+|+.+.|. +..+++ -.+.+.+|+.|.+..- ++.++ .... .-
T Consensus 145 Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~ne-i~slps--ql~~l~slr~l~vrRn-~l~~l-p~El--------~~ 210 (722)
T KOG0532|consen 145 LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPS--QLGYLTSLRDLNVRRN-HLEDL-PEEL--------CS 210 (722)
T ss_pred ceeEEEec-CccccCCcccccchhHHHhhhhhhh-hhhchH--HhhhHHHHHHHHHhhh-hhhhC-CHHH--------hC
Confidence 55665544 4666777777777788888877764 333332 4455666666655432 23232 1110 01
Q ss_pred CccceeeccccccccccccCcccccCCCcceeeeccCC
Q 045852 131 PKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACP 168 (211)
Q Consensus 131 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 168 (211)
-.|..|+++ |.++..++. .+..+..|++|.+.+.|
T Consensus 211 LpLi~lDfS-cNkis~iPv--~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 211 LPLIRLDFS-CNKISYLPV--DFRKMRHLQVLQLENNP 245 (722)
T ss_pred Cceeeeecc-cCceeecch--hhhhhhhheeeeeccCC
Confidence 124444443 455555554 24445556666665554
No 68
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=71.30 E-value=3.9 Score=31.21 Aligned_cols=79 Identities=23% Similarity=0.186 Sum_probs=50.2
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccC------CchhhhcCCccEEecccCcccccc----CCCCCC
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQN------SKLNTVFQNLETLSAHFCLNLTNL----MPSSAS 71 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~------~~~~~~l~~L~~L~l~~c~~l~~l----~~~~~~ 71 (211)
+++|..|.+.++ +++.|-+.. ...+|+|+.|.+.+.. ......+|.|++|.+-+-+ +++- .-.+..
T Consensus 63 l~rL~tLll~nN-rIt~I~p~L--~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 63 LPRLHTLLLNNN-RITRIDPDL--DTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYK 138 (233)
T ss_pred ccccceEEecCC-cceeeccch--hhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCceeEEEEe
Confidence 567888888877 788775431 2357889999875422 1234567888888875532 1111 113446
Q ss_pred CCCccEEeeccCc
Q 045852 72 FRCLTKLRVWACE 84 (211)
Q Consensus 72 l~~L~~L~l~~c~ 84 (211)
+|+|+.|+..+-.
T Consensus 139 lp~l~~LDF~kVt 151 (233)
T KOG1644|consen 139 LPSLRTLDFQKVT 151 (233)
T ss_pred cCcceEeehhhhh
Confidence 8999999876543
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=67.79 E-value=34 Score=22.99 Aligned_cols=101 Identities=13% Similarity=0.174 Sum_probs=48.1
Q ss_pred CCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccC---CCccceeeccccccccc
Q 045852 70 ASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEII---FPKLGYLELHRLQSLTT 146 (211)
Q Consensus 70 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~c~~l~~ 146 (211)
..+.+|+.+.+.+ .++.+... ....+++|+.+.+.. .++.+ +... .++++.+.+.+ .+..
T Consensus 9 ~~~~~l~~i~~~~--~~~~I~~~-~F~~~~~l~~i~~~~--~~~~i----------~~~~F~~~~~l~~i~~~~--~~~~ 71 (129)
T PF13306_consen 9 YNCSNLESITFPN--TIKKIGEN-AFSNCTSLKSINFPN--NLTSI----------GDNAFSNCKSLESITFPN--NLKS 71 (129)
T ss_dssp TT-TT--EEEETS--T--EE-TT-TTTT-TT-SEEEESS--TTSCE-----------TTTTTT-TT-EEEEETS--TT-E
T ss_pred hCCCCCCEEEECC--CeeEeChh-hcccccccccccccc--ccccc----------ceeeeecccccccccccc--cccc
Confidence 3456788888764 34444321 235667788877765 35555 1222 34577777754 4444
Q ss_pred cccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEecc
Q 045852 147 FCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLND 190 (211)
Q Consensus 147 ~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~ 190 (211)
+... ....+++|+.+.+.. +++.++.+...-.+++.+.+.+
T Consensus 72 i~~~-~F~~~~~l~~i~~~~--~~~~i~~~~f~~~~l~~i~~~~ 112 (129)
T PF13306_consen 72 IGDN-AFSNCTNLKNIDIPS--NITEIGSSSFSNCNLKEINIPS 112 (129)
T ss_dssp E-TT-TTTT-TTECEEEETT--T-BEEHTTTTTT-T--EEE-TT
T ss_pred cccc-cccccccccccccCc--cccEEchhhhcCCCceEEEECC
Confidence 4432 234578898888854 4666666544334788887764
No 70
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=67.11 E-value=1.1 Score=40.45 Aligned_cols=38 Identities=21% Similarity=0.182 Sum_probs=21.9
Q ss_pred cCCccEEecccCcccccc-CCCCCCCCCccEEeeccCcc
Q 045852 48 FQNLETLSAHFCLNLTNL-MPSSASFRCLTKLRVWACEH 85 (211)
Q Consensus 48 l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~ 85 (211)
++++..|.+-..+.-... +-.+..|.+||.|.+++|+-
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L 121 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDL 121 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcch
Confidence 455555555443322111 12455688999999999863
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=59.97 E-value=7.1 Score=18.14 Aligned_cols=12 Identities=17% Similarity=0.088 Sum_probs=6.1
Q ss_pred CCccEEeeccCc
Q 045852 73 RCLTKLRVWACE 84 (211)
Q Consensus 73 ~~L~~L~l~~c~ 84 (211)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 556666666654
No 72
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=54.82 E-value=8.2 Score=32.63 Aligned_cols=10 Identities=30% Similarity=0.438 Sum_probs=4.5
Q ss_pred cCCccEEecc
Q 045852 48 FQNLETLSAH 57 (211)
Q Consensus 48 l~~L~~L~l~ 57 (211)
+++|++|+++
T Consensus 117 ~~~L~~L~ls 126 (414)
T KOG0531|consen 117 LVNLQVLDLS 126 (414)
T ss_pred hhcchheecc
Confidence 4444444443
No 73
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=50.36 E-value=16 Score=17.80 Aligned_cols=17 Identities=71% Similarity=0.894 Sum_probs=11.9
Q ss_pred CCCccEEEecccccccee
Q 045852 2 LPNLEELRLSKNKDIAKI 19 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i 19 (211)
+++|+.|.++.+ .++.+
T Consensus 1 L~~L~~L~L~~N-kI~~I 17 (26)
T smart00365 1 LTNLEELDLSQN-KIKKI 17 (26)
T ss_pred CCccCEEECCCC-cccee
Confidence 467888888876 55554
No 74
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=41.66 E-value=16 Score=16.61 Aligned_cols=18 Identities=39% Similarity=0.881 Sum_probs=12.9
Q ss_pred CccEEEeccccccceeccc
Q 045852 4 NLEELRLSKNKDIAKIWQG 22 (211)
Q Consensus 4 ~Le~L~l~~~~~l~~i~~~ 22 (211)
+|..|++... +++.+|.+
T Consensus 1 ~LVeL~m~~S-~lekLW~G 18 (20)
T PF07725_consen 1 NLVELNMPYS-KLEKLWEG 18 (20)
T ss_pred CcEEEECCCC-ChHHhcCc
Confidence 4677888766 77777754
No 75
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=37.27 E-value=2.3 Score=30.50 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=15.3
Q ss_pred hcCCccEEecccCccccccCCCCCCCCCccEEeecc
Q 045852 47 VFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWA 82 (211)
Q Consensus 47 ~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 82 (211)
.++..+.+++++ ..+.+++..+..+|.|+.|+++.
T Consensus 75 kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 75 KFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred ccchhhhhhcch-hhhhhchHHHhhhHHhhhccccc
Confidence 344444444433 23334443344444555554444
No 76
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=24.68 E-value=46 Score=28.34 Aligned_cols=84 Identities=23% Similarity=0.138 Sum_probs=42.1
Q ss_pred HhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCee-c
Q 045852 95 AKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKI-F 173 (211)
Q Consensus 95 ~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~-l 173 (211)
.+.+++|++|++++-. ++.| -+ +. . .....++.|.+..- +++.+..+ -+.....|++|++.+. +++. .
T Consensus 270 f~~L~~L~~lnlsnN~-i~~i-~~--~a-F---e~~a~l~eL~L~~N-~l~~v~~~-~f~~ls~L~tL~L~~N-~it~~~ 338 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNK-ITRI-ED--GA-F---EGAAELQELYLTRN-KLEFVSSG-MFQGLSGLKTLSLYDN-QITTVA 338 (498)
T ss_pred HhhcccceEeccCCCc-cchh-hh--hh-h---cchhhhhhhhcCcc-hHHHHHHH-hhhccccceeeeecCC-eeEEEe
Confidence 4678888888887643 5444 11 11 0 00234555555432 33333222 2334567777777777 3443 3
Q ss_pred cCCCcCCCCccEEEec
Q 045852 174 CGGVFSAPRLKEVCLN 189 (211)
Q Consensus 174 ~~~~~~~~~L~~l~i~ 189 (211)
|..+.....|.+|.+.
T Consensus 339 ~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 339 PGAFQTLFSLSTLNLL 354 (498)
T ss_pred cccccccceeeeeehc
Confidence 3333334556666653
No 77
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=22.27 E-value=58 Score=15.78 Aligned_cols=11 Identities=64% Similarity=0.939 Sum_probs=8.3
Q ss_pred CCccEEEeccc
Q 045852 3 PNLEELRLSKN 13 (211)
Q Consensus 3 ~~Le~L~l~~~ 13 (211)
++|++|+++++
T Consensus 2 ~~L~~LdL~~N 12 (28)
T smart00368 2 PSLRELDLSNN 12 (28)
T ss_pred CccCEEECCCC
Confidence 46788888876
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=21.18 E-value=60 Score=15.85 Aligned_cols=17 Identities=35% Similarity=0.636 Sum_probs=11.3
Q ss_pred CCccEEEeccccccceec
Q 045852 3 PNLEELRLSKNKDIAKIW 20 (211)
Q Consensus 3 ~~Le~L~l~~~~~l~~i~ 20 (211)
++|+.|+++++ +++.+.
T Consensus 2 ~~L~~L~vs~N-~Lt~LP 18 (26)
T smart00364 2 PSLKELNVSNN-QLTSLP 18 (26)
T ss_pred cccceeecCCC-ccccCc
Confidence 45778888776 566554
Done!