Query 045852
Match_columns 211
No_of_seqs 137 out of 1310
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 10:28:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045852.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045852hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.7 2.2E-15 7.4E-20 121.5 14.7 178 3-198 104-294 (328)
2 4fcg_A Uncharacterized protein 99.6 4.7E-14 1.6E-18 113.7 12.5 171 2-190 126-310 (328)
3 2ast_B S-phase kinase-associat 99.4 6.2E-14 2.1E-18 112.8 4.1 180 2-191 92-282 (336)
4 2ast_B S-phase kinase-associat 99.4 4.6E-14 1.6E-18 113.5 1.7 181 3-194 70-260 (336)
5 1ozn_A Reticulon 4 receptor; N 99.4 1.7E-11 5.7E-16 96.5 14.9 103 3-110 32-140 (285)
6 3o6n_A APL1; leucine-rich repe 99.4 1.7E-11 5.8E-16 100.6 15.0 62 130-194 247-308 (390)
7 2xwt_C Thyrotropin receptor; s 99.4 1.6E-11 5.5E-16 94.2 13.3 172 3-191 31-215 (239)
8 3zyj_A Leucine-rich repeat-con 99.3 2.1E-11 7.2E-16 101.8 14.3 182 2-192 87-290 (440)
9 3o53_A Protein LRIM1, AGAP0063 99.3 2.6E-11 8.8E-16 97.0 13.6 172 2-194 57-250 (317)
10 3zyj_A Leucine-rich repeat-con 99.3 2.9E-11 1E-15 100.9 14.0 180 2-191 63-265 (440)
11 3zyi_A Leucine-rich repeat-con 99.3 3.1E-11 1.1E-15 101.1 13.8 37 155-192 264-301 (452)
12 2z66_A Variable lymphocyte rec 99.3 1.1E-10 3.9E-15 92.6 16.3 136 45-192 122-259 (306)
13 3rfs_A Internalin B, repeat mo 99.3 4.9E-11 1.7E-15 93.4 13.6 172 2-192 40-216 (272)
14 3oja_B Anopheles plasmodium-re 99.3 4.9E-11 1.7E-15 103.3 14.9 102 2-109 74-181 (597)
15 1h6u_A Internalin H; cell adhe 99.3 4.4E-11 1.5E-15 95.4 12.8 172 2-192 40-228 (308)
16 2id5_A Lingo-1, leucine rich r 99.3 6.8E-11 2.3E-15 99.5 14.3 77 3-83 32-114 (477)
17 3zyi_A Leucine-rich repeat-con 99.3 8.6E-11 3E-15 98.4 14.8 181 3-192 75-277 (452)
18 4fmz_A Internalin; leucine ric 99.3 4.1E-11 1.4E-15 96.6 12.4 37 154-192 218-254 (347)
19 1ozn_A Reticulon 4 receptor; N 99.3 1.2E-10 4E-15 91.6 14.7 175 2-193 55-237 (285)
20 2z62_A TOLL-like receptor 4, v 99.3 1.1E-10 3.7E-15 91.4 13.6 42 155-197 198-246 (276)
21 2xwt_C Thyrotropin receptor; s 99.3 9.1E-11 3.1E-15 90.0 12.8 175 2-194 54-239 (239)
22 4fmz_A Internalin; leucine ric 99.3 3.3E-11 1.1E-15 97.2 10.8 166 2-192 154-322 (347)
23 3vq2_A TLR4, TOLL-like recepto 99.3 9.9E-11 3.4E-15 101.2 14.4 136 45-192 420-556 (606)
24 2o6q_A Variable lymphocyte rec 99.3 1.8E-10 6.1E-15 90.0 14.3 173 3-192 37-216 (270)
25 3vq2_A TLR4, TOLL-like recepto 99.3 5.8E-11 2E-15 102.6 12.7 181 2-192 327-532 (606)
26 3t6q_A CD180 antigen; protein- 99.2 9.1E-11 3.1E-15 101.4 13.5 183 2-192 277-487 (606)
27 3oja_A Leucine-rich immune mol 99.2 8.1E-11 2.8E-15 99.7 12.9 172 2-194 57-250 (487)
28 2z66_A Variable lymphocyte rec 99.2 5E-11 1.7E-15 94.6 10.9 180 3-192 28-234 (306)
29 3o6n_A APL1; leucine-rich repe 99.2 1.3E-10 4.4E-15 95.4 13.3 58 130-191 271-328 (390)
30 1p9a_G Platelet glycoprotein I 99.2 1.9E-10 6.4E-15 91.0 13.7 149 29-191 54-205 (290)
31 2z80_A TOLL-like receptor 2, v 99.2 1.9E-10 6.4E-15 93.2 13.9 39 155-194 275-314 (353)
32 2z63_A TOLL-like receptor 4, v 99.2 1E-10 3.6E-15 100.1 12.4 133 46-192 393-529 (570)
33 1wwl_A Monocyte differentiatio 99.2 6.5E-11 2.2E-15 94.5 10.4 179 2-191 94-284 (312)
34 3t6q_A CD180 antigen; protein- 99.2 1.9E-10 6.3E-15 99.5 13.4 79 2-83 324-410 (606)
35 4ezg_A Putative uncharacterize 99.2 2.5E-10 8.6E-15 85.0 12.3 149 27-192 41-192 (197)
36 3o53_A Protein LRIM1, AGAP0063 99.2 6.6E-11 2.3E-15 94.6 9.6 173 2-192 33-225 (317)
37 1ogq_A PGIP-2, polygalacturona 99.2 6.9E-11 2.4E-15 94.4 9.7 185 2-194 75-281 (313)
38 3rgz_A Protein brassinosteroid 99.2 2.1E-10 7.1E-15 102.1 13.6 62 130-193 489-550 (768)
39 2id5_A Lingo-1, leucine rich r 99.2 3.2E-10 1.1E-14 95.3 14.2 60 130-192 271-331 (477)
40 1xku_A Decorin; proteoglycan, 99.2 2.2E-10 7.4E-15 91.9 12.5 183 3-192 52-274 (330)
41 4ezg_A Putative uncharacterize 99.2 1.2E-10 4.2E-15 86.7 9.9 35 156-191 135-169 (197)
42 1h6u_A Internalin H; cell adhe 99.2 1.7E-10 5.7E-15 92.0 11.3 78 27-110 38-118 (308)
43 3oja_B Anopheles plasmodium-re 99.2 2.5E-10 8.6E-15 98.8 13.2 78 2-83 98-181 (597)
44 1h6t_A Internalin B; cell adhe 99.2 1.8E-10 6.1E-15 91.2 11.0 164 2-192 45-211 (291)
45 2z80_A TOLL-like receptor 2, v 99.2 9.5E-11 3.3E-15 94.9 8.9 174 3-191 52-232 (353)
46 2z81_A CD282 antigen, TOLL-lik 99.2 4.9E-10 1.7E-14 95.7 13.6 125 46-193 384-509 (549)
47 3oja_A Leucine-rich immune mol 99.2 1.6E-10 5.5E-15 97.8 10.2 173 2-192 33-225 (487)
48 2z63_A TOLL-like receptor 4, v 99.1 1.8E-10 6.3E-15 98.6 10.4 135 46-192 370-505 (570)
49 1p9a_G Platelet glycoprotein I 99.1 6E-10 2.1E-14 88.1 12.4 169 2-192 9-183 (290)
50 1ogq_A PGIP-2, polygalacturona 99.1 4.1E-10 1.4E-14 89.9 11.5 179 3-194 50-257 (313)
51 4eco_A Uncharacterized protein 99.1 3.3E-10 1.1E-14 98.9 11.5 159 27-193 203-414 (636)
52 3m19_A Variable lymphocyte rec 99.1 1.3E-09 4.4E-14 84.2 13.4 168 5-192 16-190 (251)
53 1o6v_A Internalin A; bacterial 99.1 6.3E-10 2.1E-14 93.5 12.5 172 2-192 198-386 (466)
54 2ft3_A Biglycan; proteoglycan, 99.1 1.5E-09 5.3E-14 87.1 14.2 179 3-192 54-275 (332)
55 3v47_A TOLL-like receptor 5B a 99.1 1.1E-09 3.9E-14 91.3 13.6 36 155-191 369-405 (455)
56 1xku_A Decorin; proteoglycan, 99.1 2.3E-09 7.8E-14 85.9 14.8 178 4-192 32-251 (330)
57 1m9s_A Internalin B; cell inva 99.1 4.4E-10 1.5E-14 97.5 11.2 164 2-192 42-208 (605)
58 1o6v_A Internalin A; bacterial 99.1 1.1E-09 3.6E-14 92.1 12.8 175 2-194 176-366 (466)
59 2ft3_A Biglycan; proteoglycan, 99.1 1.1E-09 3.8E-14 87.9 12.4 62 129-194 239-307 (332)
60 3bz5_A Internalin-J, INLJ; leu 99.1 9.4E-10 3.2E-14 92.4 12.2 169 2-192 41-223 (457)
61 2o6q_A Variable lymphocyte rec 99.1 2.3E-09 7.8E-14 83.7 13.6 168 5-192 18-192 (270)
62 2z62_A TOLL-like receptor 4, v 99.1 1.2E-09 4.2E-14 85.4 11.7 174 3-192 28-211 (276)
63 3rgz_A Protein brassinosteroid 99.1 8.8E-10 3E-14 98.1 12.1 185 2-194 317-527 (768)
64 3v47_A TOLL-like receptor 5B a 99.1 2.2E-09 7.6E-14 89.5 13.7 38 155-192 297-334 (455)
65 3bz5_A Internalin-J, INLJ; leu 99.1 2.1E-09 7.3E-14 90.2 13.5 73 2-83 63-137 (457)
66 4glp_A Monocyte differentiatio 99.1 3.2E-10 1.1E-14 90.3 8.1 105 3-109 91-207 (310)
67 2p1m_B Transport inhibitor res 99.1 6.3E-11 2.2E-15 102.0 4.1 62 47-109 154-221 (594)
68 2z81_A CD282 antigen, TOLL-lik 99.1 4.7E-10 1.6E-14 95.8 9.3 176 3-192 26-234 (549)
69 1wwl_A Monocyte differentiatio 99.0 1.1E-09 3.8E-14 87.3 10.3 172 2-192 120-307 (312)
70 4ecn_A Leucine-rich repeat pro 99.0 1.4E-09 4.8E-14 97.9 12.0 139 47-192 489-655 (876)
71 4ay9_X Follicle-stimulating ho 99.0 8.5E-10 2.9E-14 89.4 8.6 188 2-199 29-241 (350)
72 3rfs_A Internalin B, repeat mo 99.0 3.5E-09 1.2E-13 82.7 11.7 149 2-168 62-216 (272)
73 3j0a_A TOLL-like receptor 5; m 99.0 1.8E-08 6.1E-13 90.6 17.5 81 28-110 71-159 (844)
74 3g06_A SSPH2 (leucine-rich rep 99.0 8.7E-09 3E-13 89.6 14.7 58 130-194 240-297 (622)
75 2p1m_B Transport inhibitor res 99.0 3.9E-11 1.3E-15 103.3 -0.2 108 2-110 65-195 (594)
76 3ogk_B Coronatine-insensitive 99.0 5.1E-11 1.7E-15 102.6 0.5 103 3-108 293-412 (592)
77 2z7x_B TOLL-like receptor 1, v 99.0 6E-09 2E-13 88.4 13.2 139 46-192 321-479 (520)
78 4ay9_X Follicle-stimulating ho 99.0 9.4E-09 3.2E-13 83.2 13.7 162 29-197 29-217 (350)
79 4eco_A Uncharacterized protein 99.0 1E-09 3.5E-14 95.8 8.3 101 2-109 248-363 (636)
80 1ziw_A TOLL-like receptor 3; i 99.0 1.1E-08 3.6E-13 89.7 14.8 35 155-189 270-304 (680)
81 2z7x_B TOLL-like receptor 1, v 99.0 2.1E-09 7.2E-14 91.2 9.9 107 46-169 371-480 (520)
82 4glp_A Monocyte differentiatio 99.0 1.6E-09 5.4E-14 86.3 8.4 177 2-192 116-305 (310)
83 4ecn_A Leucine-rich repeat pro 99.0 4.6E-09 1.6E-13 94.6 12.2 148 30-195 673-841 (876)
84 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 1.4E-08 4.7E-13 87.2 14.0 139 46-192 350-508 (562)
85 1ziw_A TOLL-like receptor 3; i 98.9 1.4E-08 4.8E-13 88.9 13.5 36 157-192 248-283 (680)
86 1h6t_A Internalin B; cell adhe 98.9 5.8E-09 2E-13 82.4 10.1 142 2-168 67-211 (291)
87 3j0a_A TOLL-like receptor 5; m 98.9 8.4E-09 2.9E-13 92.7 12.2 177 2-191 23-214 (844)
88 3ogk_B Coronatine-insensitive 98.9 1.4E-09 4.7E-14 93.6 6.1 60 46-108 290-351 (592)
89 1m9s_A Internalin B; cell inva 98.9 6.2E-09 2.1E-13 90.3 10.0 142 2-168 64-208 (605)
90 3m19_A Variable lymphocyte rec 98.9 2.2E-08 7.6E-13 77.2 11.9 150 3-168 35-190 (251)
91 2ell_A Acidic leucine-rich nuc 98.9 1.8E-09 6.2E-14 78.2 5.2 129 28-168 22-158 (168)
92 3g06_A SSPH2 (leucine-rich rep 98.8 1.8E-08 6.1E-13 87.7 10.4 52 131-192 221-272 (622)
93 3cvr_A Invasion plasmid antige 98.8 3.2E-08 1.1E-12 85.2 11.8 168 4-195 60-244 (571)
94 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 1.1E-07 3.9E-12 81.4 15.2 99 3-108 52-155 (562)
95 2ell_A Acidic leucine-rich nuc 98.8 2.7E-08 9.3E-13 71.9 9.5 133 47-195 22-161 (168)
96 1jl5_A Outer protein YOPM; leu 98.8 6.1E-08 2.1E-12 81.3 12.7 72 30-109 111-183 (454)
97 1xeu_A Internalin C; cellular 98.8 4E-08 1.4E-12 76.5 10.0 141 2-168 40-183 (263)
98 1xeu_A Internalin C; cellular 98.7 5.6E-08 1.9E-12 75.6 9.6 160 5-192 21-183 (263)
99 4g8a_A TOLL-like receptor 4; l 98.7 2.2E-07 7.5E-12 80.1 14.0 133 46-190 442-576 (635)
100 2o6s_A Variable lymphocyte rec 98.7 4.8E-08 1.6E-12 73.0 8.6 126 29-167 27-158 (208)
101 2ca6_A RAN GTPase-activating p 98.7 1.8E-09 6.2E-14 88.4 0.2 60 130-193 215-286 (386)
102 2je0_A Acidic leucine-rich nuc 98.7 6.7E-09 2.3E-13 73.6 3.0 56 49-109 17-74 (149)
103 1jl5_A Outer protein YOPM; leu 98.7 2.4E-07 8.3E-12 77.6 12.4 143 30-191 131-287 (454)
104 2ca6_A RAN GTPase-activating p 98.6 8.4E-09 2.9E-13 84.4 2.6 66 129-195 242-317 (386)
105 3e6j_A Variable lymphocyte rec 98.6 2.6E-07 9.1E-12 70.2 10.7 128 49-191 40-169 (229)
106 2je0_A Acidic leucine-rich nuc 98.6 6.3E-08 2.2E-12 68.5 6.5 125 29-165 16-148 (149)
107 4g8a_A TOLL-like receptor 4; l 98.6 2.9E-07 1E-11 79.4 11.7 134 47-192 418-553 (635)
108 3e4g_A ATP synthase subunit S, 98.6 1.8E-08 6.2E-13 73.5 3.2 63 50-113 62-128 (176)
109 2v70_A SLIT-2, SLIT homolog 2 98.6 7.1E-07 2.4E-11 67.4 12.2 127 29-168 31-164 (220)
110 2o6s_A Variable lymphocyte rec 98.6 5.9E-07 2E-11 67.0 11.3 131 48-192 27-159 (208)
111 2v9t_B SLIT homolog 2 protein 98.6 5E-07 1.7E-11 68.3 11.0 36 46-82 53-89 (220)
112 3cvr_A Invasion plasmid antige 98.6 5.2E-07 1.8E-11 77.7 12.3 70 31-110 60-131 (571)
113 1a9n_A U2A', U2A'; complex (nu 98.5 6.9E-08 2.4E-12 70.4 4.8 37 155-192 111-151 (176)
114 3e6j_A Variable lymphocyte rec 98.5 8.9E-07 3E-11 67.3 11.0 127 28-168 38-170 (229)
115 3e4g_A ATP synthase subunit S, 98.5 3.4E-08 1.2E-12 72.1 2.7 94 73-172 61-154 (176)
116 2v9t_B SLIT homolog 2 protein 98.5 9.7E-07 3.3E-11 66.7 10.8 130 49-192 32-163 (220)
117 1z7x_W Ribonuclease inhibitor; 98.5 8.6E-09 2.9E-13 86.0 -1.2 36 156-192 369-409 (461)
118 2xot_A Amphoterin-induced prot 98.5 5.7E-07 2E-11 73.0 9.4 167 7-192 22-200 (361)
119 2v70_A SLIT-2, SLIT homolog 2 98.4 1.8E-06 6.1E-11 65.2 10.6 131 48-192 31-164 (220)
120 1a9n_A U2A', U2A'; complex (nu 98.4 3E-07 1E-11 67.0 5.8 109 49-169 42-152 (176)
121 1z7x_W Ribonuclease inhibitor; 98.4 1.8E-08 6.1E-13 84.1 -1.9 36 155-191 225-266 (461)
122 1w8a_A SLIT protein; signaling 98.4 4.1E-06 1.4E-10 61.8 10.5 60 130-191 77-136 (192)
123 3goz_A Leucine-rich repeat-con 98.3 1.5E-07 5.3E-12 76.3 2.6 104 3-109 22-148 (362)
124 2xot_A Amphoterin-induced prot 98.3 3.9E-06 1.3E-10 68.0 10.6 131 48-192 38-174 (361)
125 2ra8_A Uncharacterized protein 98.3 8.9E-07 3.1E-11 72.1 6.5 161 27-192 136-318 (362)
126 3goz_A Leucine-rich repeat-con 98.3 1.5E-07 5E-12 76.5 1.7 105 2-109 49-177 (362)
127 4b8c_D Glucose-repressible alc 98.3 9.2E-07 3.1E-11 78.3 5.7 108 45-168 220-327 (727)
128 1ds9_A Outer arm dynein; leuci 98.2 5.9E-08 2E-12 72.1 -2.3 130 44-189 43-182 (198)
129 2o6r_A Variable lymphocyte rec 98.1 5.8E-05 2E-09 54.6 11.7 60 130-192 75-135 (177)
130 1dce_A Protein (RAB geranylger 98.1 1.5E-05 5.1E-10 68.6 9.3 101 74-192 442-544 (567)
131 4b8c_D Glucose-repressible alc 98.1 1E-05 3.5E-10 71.7 8.3 115 67-197 218-332 (727)
132 2o6r_A Variable lymphocyte rec 98.0 2.4E-05 8.3E-10 56.6 8.5 120 6-142 10-135 (177)
133 2wfh_A SLIT homolog 2 protein 98.0 8.2E-05 2.8E-09 54.8 10.9 105 73-191 31-136 (193)
134 1w8a_A SLIT protein; signaling 98.0 2.7E-05 9.3E-10 57.3 8.0 119 6-141 11-136 (192)
135 2wfh_A SLIT homolog 2 protein 98.0 3.5E-05 1.2E-09 56.8 8.5 118 7-141 14-136 (193)
136 2ra8_A Uncharacterized protein 97.9 3.2E-05 1.1E-09 62.9 7.8 159 2-168 138-318 (362)
137 3sb4_A Hypothetical leucine ri 97.9 7.3E-05 2.5E-09 59.6 9.7 55 130-189 249-305 (329)
138 1ds9_A Outer arm dynein; leuci 97.8 3.9E-06 1.3E-10 62.1 0.7 104 27-142 45-151 (198)
139 3sb4_A Hypothetical leucine ri 97.7 0.00035 1.2E-08 55.6 11.1 98 72-187 225-327 (329)
140 1dce_A Protein (RAB geranylger 97.7 7.3E-05 2.5E-09 64.3 6.9 121 50-187 442-566 (567)
141 3g39_A Variable lymphocyte rec 97.6 0.00017 5.7E-09 52.0 7.3 94 6-108 12-111 (170)
142 4fdw_A Leucine rich hypothetic 97.6 0.0022 7.4E-08 52.7 14.8 58 45-107 222-279 (401)
143 2r9u_A Variable lymphocyte rec 97.6 0.0002 7E-09 51.8 7.6 36 46-82 54-90 (174)
144 2r9u_A Variable lymphocyte rec 97.5 0.00037 1.3E-08 50.4 7.5 79 2-84 32-116 (174)
145 2ifg_A High affinity nerve gro 97.5 0.00056 1.9E-08 54.7 8.8 94 61-167 20-113 (347)
146 3g39_A Variable lymphocyte rec 97.4 0.00064 2.2E-08 48.9 7.5 79 2-84 29-113 (170)
147 3un9_A NLR family member X1; l 97.4 2.2E-05 7.6E-10 64.0 -0.6 157 2-168 71-250 (372)
148 4fdw_A Leucine rich hypothetic 97.2 0.0074 2.5E-07 49.5 13.1 35 153-189 296-331 (401)
149 2ifg_A High affinity nerve gro 97.2 0.0016 5.4E-08 52.0 8.7 86 45-141 27-113 (347)
150 3un9_A NLR family member X1; l 96.6 0.00011 3.7E-09 59.9 -3.1 155 28-192 70-250 (372)
151 1io0_A Tropomodulin; LRR prote 94.9 0.015 5.1E-07 42.2 2.7 77 28-106 34-128 (185)
152 3rw6_A Nuclear RNA export fact 94.5 0.022 7.6E-07 44.1 3.1 77 28-106 168-258 (267)
153 4fs7_A Uncharacterized protein 93.3 1.4 4.9E-05 35.4 11.8 35 154-190 340-375 (394)
154 1io0_A Tropomodulin; LRR prote 93.0 0.017 5.8E-07 41.9 -0.2 63 47-110 34-104 (185)
155 3rw6_A Nuclear RNA export fact 92.0 0.16 5.4E-06 39.2 4.3 88 46-140 167-260 (267)
156 4fs7_A Uncharacterized protein 87.0 10 0.00035 30.3 12.0 29 29-57 70-102 (394)
157 4gt6_A Cell surface protein; l 81.8 9.2 0.00031 30.6 9.1 97 28-141 263-367 (394)
158 4h09_A Hypothetical leucine ri 79.7 12 0.00042 29.5 9.1 102 4-115 218-324 (379)
159 4h09_A Hypothetical leucine ri 73.4 23 0.00078 27.9 9.1 31 131-164 310-340 (379)
160 4gt6_A Cell surface protein; l 69.6 29 0.001 27.6 8.9 10 71-80 263-272 (394)
161 3rfe_A Platelet glycoprotein I 45.5 19 0.00064 24.0 3.2 35 132-168 32-66 (130)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.66 E-value=2.2e-15 Score=121.54 Aligned_cols=178 Identities=21% Similarity=0.211 Sum_probs=102.2
Q ss_pred CCccEEEeccccccceecccccCcccccCccEEEEEccCC----chhhhcCCccEEecccCccccccCCCCCC-------
Q 045852 3 PNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNS----KLNTVFQNLETLSAHFCLNLTNLMPSSAS------- 71 (211)
Q Consensus 3 ~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~----~~~~~l~~L~~L~l~~c~~l~~l~~~~~~------- 71 (211)
++|++|+++++ +++.+.. ....+++|++|++..... .....+++|++|++++|..+..++.....
T Consensus 104 ~~L~~L~L~~n-~l~~lp~---~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 104 SHLQHMTIDAA-GLMELPD---TMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp TTCSEEEEESS-CCCCCCS---CGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred CCCCEEECCCC-CccchhH---HHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 34555555544 3332221 123455555555543211 12345556666666665555444433322
Q ss_pred --CCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeecccccccccccc
Q 045852 72 --FRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCS 149 (211)
Q Consensus 72 --l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 149 (211)
+++|++|+++++ .++.++. ....+++|++|+++++. +..+ .. ....+++|+.|+++++.....++.
T Consensus 180 ~~l~~L~~L~L~~n-~l~~lp~--~l~~l~~L~~L~L~~N~-l~~l-~~-------~l~~l~~L~~L~Ls~n~~~~~~p~ 247 (328)
T 4fcg_A 180 QGLVNLQSLRLEWT-GIRSLPA--SIANLQNLKSLKIRNSP-LSAL-GP-------AIHHLPKLEELDLRGCTALRNYPP 247 (328)
T ss_dssp EESTTCCEEEEEEE-CCCCCCG--GGGGCTTCCEEEEESSC-CCCC-CG-------GGGGCTTCCEEECTTCTTCCBCCC
T ss_pred ccCCCCCEEECcCC-CcCcchH--hhcCCCCCCEEEccCCC-CCcC-ch-------hhccCCCCCEEECcCCcchhhhHH
Confidence 566666666654 2333322 34566666666666654 2222 11 112367888888888766655543
Q ss_pred CcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCCCchhhc
Q 045852 150 ANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIEKLFYLL 198 (211)
Q Consensus 150 ~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~~l~~~~ 198 (211)
....+++|++|++++|.....+|..+..+++|++|++.+|+.+..++
T Consensus 248 --~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 248 --IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp --CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred --HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 24456888888888888888888877778888888888888776554
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.55 E-value=4.7e-14 Score=113.69 Aligned_cols=171 Identities=19% Similarity=0.219 Sum_probs=133.6
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccC------Cch--------hhhcCCccEEecccCccccccCC
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQN------SKL--------NTVFQNLETLSAHFCLNLTNLMP 67 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~------~~~--------~~~l~~L~~L~l~~c~~l~~l~~ 67 (211)
+++|+.|+++++ .++.+.. ....+++|++|++.... ... ...+++|++|+++++ +++.++.
T Consensus 126 l~~L~~L~Ls~n-~l~~lp~---~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~ 200 (328)
T 4fcg_A 126 FAGLETLTLARN-PLRALPA---SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPA 200 (328)
T ss_dssp GTTCSEEEEESC-CCCCCCG---GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCG
T ss_pred cCCCCEEECCCC-ccccCcH---HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchH
Confidence 578999999998 7775542 23568999999996521 111 234899999999987 5667766
Q ss_pred CCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeecccccccccc
Q 045852 68 SSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTF 147 (211)
Q Consensus 68 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 147 (211)
.+..+++|++|+++++. +..+++ ....+++|++|++++|.....+ .. .-..+++|+.|++.+|.....+
T Consensus 201 ~l~~l~~L~~L~L~~N~-l~~l~~--~l~~l~~L~~L~Ls~n~~~~~~-p~-------~~~~l~~L~~L~L~~n~~~~~~ 269 (328)
T 4fcg_A 201 SIANLQNLKSLKIRNSP-LSALGP--AIHHLPKLEELDLRGCTALRNY-PP-------IFGGRAPLKRLILKDCSNLLTL 269 (328)
T ss_dssp GGGGCTTCCEEEEESSC-CCCCCG--GGGGCTTCCEEECTTCTTCCBC-CC-------CTTCCCCCCEEECTTCTTCCBC
T ss_pred hhcCCCCCCEEEccCCC-CCcCch--hhccCCCCCEEECcCCcchhhh-HH-------HhcCCCCCCEEECCCCCchhhc
Confidence 77889999999999975 444443 4678999999999998855544 22 1233889999999999887777
Q ss_pred ccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEecc
Q 045852 148 CSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLND 190 (211)
Q Consensus 148 ~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~ 190 (211)
+.. ...+++|++|++++|+.+..+|..+..+++|+.+.+..
T Consensus 270 p~~--~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 270 PLD--IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CTT--GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred chh--hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 653 45789999999999999999999999999999998765
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.42 E-value=6.2e-14 Score=112.77 Aligned_cols=180 Identities=19% Similarity=0.133 Sum_probs=95.3
Q ss_pred CCCccEEEecccccccee-cccccCcccccCccEEEEEccCCc-----hhhhcCCccEEecccCccccc--cCCCCCCCC
Q 045852 2 LPNLEELRLSKNKDIAKI-WQGPFTDHLLNKLEHLWLWEQNSK-----LNTVFQNLETLSAHFCLNLTN--LMPSSASFR 73 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i-~~~~~~~~~~~~Lk~L~l~~~~~~-----~~~~l~~L~~L~l~~c~~l~~--l~~~~~~l~ 73 (211)
+++|++|++++| .+... .. .....+++|++|++...... ....+++|++|++++|..++. +......++
T Consensus 92 ~~~L~~L~L~~~-~l~~~~~~--~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 92 PFRVQHMDLSNS-VIEVSTLH--GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CBCCCEEECTTC-EECHHHHH--HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred CCCCCEEEccCC-CcCHHHHH--HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 345555666555 23221 10 01123566666665432221 223456666666666654443 222234466
Q ss_pred CccEEeeccCccchhccchHHHhccC-CCcEEEEeecC-CCcEEeccccCCCCCCccCCCccceeeccccccccccccCc
Q 045852 74 CLTKLRVWACEHLINLVASSAAKNLV-QLVHVSVSECS-KITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSAN 151 (211)
Q Consensus 74 ~L~~L~l~~c~~l~~~~~~~~~~~l~-~L~~L~i~~c~-~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 151 (211)
+|++|++++|..+++.........++ +|++|++++|. .+..-.+.. ....+++|+.|++.+|..+++....
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~------~~~~~~~L~~L~l~~~~~l~~~~~~- 241 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST------LVRRCPNLVHLDLSDSVMLKNDCFQ- 241 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH------HHHHCTTCSEEECTTCTTCCGGGGG-
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH------HHhhCCCCCEEeCCCCCcCCHHHHH-
Confidence 66666666665555432222445666 66666666664 222100000 0123778888888888655543222
Q ss_pred ccccCCCcceeeeccCCCCeecc-CCCcCCCCccEEEeccC
Q 045852 152 YTFKFPSLCDLSVSACPKMKIFC-GGVFSAPRLKEVCLNDI 191 (211)
Q Consensus 152 ~~~~~~~L~~L~i~~c~~l~~l~-~~~~~~~~L~~l~i~~c 191 (211)
....+++|++|++++|..+..-. ..+..+++|++|++.+|
T Consensus 242 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 242 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 23456888888888887443210 12345688888988888
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.40 E-value=4.6e-14 Score=113.50 Aligned_cols=181 Identities=15% Similarity=0.157 Sum_probs=124.6
Q ss_pred CCccEEEeccccccceecccccCcccccCccEEEEEccCC------chhhhcCCccEEecccCcccc-ccCCCCCCCCCc
Q 045852 3 PNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNS------KLNTVFQNLETLSAHFCLNLT-NLMPSSASFRCL 75 (211)
Q Consensus 3 ~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~------~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~l~~L 75 (211)
++++.|++.++ .+...... ...+++|++|++..... .....+++|++|++++|. ++ ..+..+..+++|
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~---~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L 144 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAE---HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNL 144 (336)
T ss_dssp TTCSEEECTTC-EECSCCCS---CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTC
T ss_pred ccceEEEcCCc-cccccchh---hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCC
Confidence 56677777766 44444322 23578999999854321 234678999999999984 44 333445568999
Q ss_pred cEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCC-ccceeeccccc-cccccccCccc
Q 045852 76 TKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFP-KLGYLELHRLQ-SLTTFCSANYT 153 (211)
Q Consensus 76 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~c~-~l~~~~~~~~~ 153 (211)
++|++++|..+++.........+++|++|++++|..+....+.. ....++ +|+.|++.+|. .+++-......
T Consensus 145 ~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~------~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~ 218 (336)
T 2ast_B 145 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV------AVAHVSETITQLNLSGYRKNLQKSDLSTLV 218 (336)
T ss_dssp SEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH------HHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred CEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH------HHHhcccCCCEEEeCCCcccCCHHHHHHHH
Confidence 99999999877764333456789999999999995554320000 012378 99999999986 45421111123
Q ss_pred ccCCCcceeeeccCCCCe-eccCCCcCCCCccEEEeccCCCc
Q 045852 154 FKFPSLCDLSVSACPKMK-IFCGGVFSAPRLKEVCLNDIEKL 194 (211)
Q Consensus 154 ~~~~~L~~L~i~~c~~l~-~l~~~~~~~~~L~~l~i~~c~~l 194 (211)
..+++|++|++++|..++ ..+..+..+++|++|++.+|...
T Consensus 219 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence 468999999999998665 34445567799999999999744
No 5
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.37 E-value=1.7e-11 Score=96.51 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=61.3
Q ss_pred CCccEEEeccccccceecccccCcccccCccEEEEEccC-----CchhhhcCCccEEecccCccccccC-CCCCCCCCcc
Q 045852 3 PNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQN-----SKLNTVFQNLETLSAHFCLNLTNLM-PSSASFRCLT 76 (211)
Q Consensus 3 ~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~-----~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~ 76 (211)
++|++|+++++ +++.+.... ...+++|++|++.... ......+++|++|+++++..++.+. .....+++|+
T Consensus 32 ~~l~~L~l~~n-~i~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 32 AASQRIFLHGN-RISHVPAAS--FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108 (285)
T ss_dssp TTCSEEECTTS-CCCEECTTT--TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred CCceEEEeeCC-cCCccCHHH--cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence 56788888877 666654321 2356777887764322 2234566777888877765566553 3455677777
Q ss_pred EEeeccCccchhccchHHHhccCCCcEEEEeecC
Q 045852 77 KLRVWACEHLINLVASSAAKNLVQLVHVSVSECS 110 (211)
Q Consensus 77 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 110 (211)
+|+++++. +....+ .....+++|++|+++++.
T Consensus 109 ~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~ 140 (285)
T 1ozn_A 109 TLHLDRCG-LQELGP-GLFRGLAALQYLYLQDNA 140 (285)
T ss_dssp EEECTTSC-CCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred EEECCCCc-CCEECH-hHhhCCcCCCEEECCCCc
Confidence 77777754 222221 124566777777776653
No 6
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.36 E-value=1.7e-11 Score=100.64 Aligned_cols=62 Identities=21% Similarity=0.134 Sum_probs=35.8
Q ss_pred CCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCCCc
Q 045852 130 FPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIEKL 194 (211)
Q Consensus 130 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~~l 194 (211)
+++|+.|+++++ .++.+... ....+++|++|+++++ +++.++.....+++|+.|++.+|.--
T Consensus 247 l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~l~ 308 (390)
T 3o6n_A 247 YPGLVEVDLSYN-ELEKIMYH-PFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLL 308 (390)
T ss_dssp CTTCSEEECCSS-CCCEEESG-GGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSCCC
T ss_pred CCCccEEECCCC-cCCCcChh-HccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCcce
Confidence 344555555444 22222111 2234677777777776 45666665556788888888887533
No 7
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.35 E-value=1.6e-11 Score=94.19 Aligned_cols=172 Identities=10% Similarity=0.057 Sum_probs=103.7
Q ss_pred CCccEEEeccccccceecccccCcccccCccEEEEEccC-C-----chhhhcCCccEEecccCccccccCC-CCCCCCCc
Q 045852 3 PNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQN-S-----KLNTVFQNLETLSAHFCLNLTNLMP-SSASFRCL 75 (211)
Q Consensus 3 ~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~-~-----~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L 75 (211)
++|+.|+++++ +++.+.... ...+++|++|++.... . .....+++|++|++++|..++.+.+ ....+++|
T Consensus 31 ~~l~~L~l~~n-~l~~i~~~~--~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPSHA--FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp TTCCEEEEESC-CCSEECTTT--TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred CcccEEEEeCC-cceEECHHH--ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 46888888887 777775422 2357888888886542 2 2345678888888888777777764 34567888
Q ss_pred cEEeeccCccchhccchHHHhccCCCc---EEEEeecCCCcEEeccccCCCCCCccCCCccc-eeeccccccccccccCc
Q 045852 76 TKLRVWACEHLINLVASSAAKNLVQLV---HVSVSECSKITELVVASEGDAANDEIIFPKLG-YLELHRLQSLTTFCSAN 151 (211)
Q Consensus 76 ~~L~l~~c~~l~~~~~~~~~~~l~~L~---~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~~~~~~ 151 (211)
++|+++++. ++.++. ...+++|+ +|+++++..++.+ .... -..+++|+ .|++.+. .++.++..
T Consensus 108 ~~L~l~~n~-l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i-~~~~------~~~l~~L~~~L~l~~n-~l~~i~~~- 174 (239)
T 2xwt_C 108 KFLGIFNTG-LKMFPD---LTKVYSTDIFFILEITDNPYMTSI-PVNA------FQGLCNETLTLKLYNN-GFTSVQGY- 174 (239)
T ss_dssp CEEEEEEEC-CCSCCC---CTTCCBCCSEEEEEEESCTTCCEE-CTTT------TTTTBSSEEEEECCSC-CCCEECTT-
T ss_pred CEEeCCCCC-Cccccc---cccccccccccEEECCCCcchhhc-Cccc------ccchhcceeEEEcCCC-CCcccCHh-
Confidence 888888764 344432 35566666 8888877556666 2110 01245566 6666544 33444332
Q ss_pred ccccCCCcceeeeccCCCCeeccCC-CcCC-CCccEEEeccC
Q 045852 152 YTFKFPSLCDLSVSACPKMKIFCGG-VFSA-PRLKEVCLNDI 191 (211)
Q Consensus 152 ~~~~~~~L~~L~i~~c~~l~~l~~~-~~~~-~~L~~l~i~~c 191 (211)
....++|++|++.+++.++.++.. +..+ ++|+.|++.++
T Consensus 175 -~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 175 -AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp -TTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred -hcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence 122256666666666556555443 2334 56666666653
No 8
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.34 E-value=2.1e-11 Score=101.76 Aligned_cols=182 Identities=16% Similarity=0.174 Sum_probs=99.4
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEcc-----CCchhhhcCCccEEecccCccccccCC-CCCCCCCc
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQ-----NSKLNTVFQNLETLSAHFCLNLTNLMP-SSASFRCL 75 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~-----~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L 75 (211)
+++|+.|+++++ +++.+.... ...+++|++|++... +......+++|++|+++++ .++.+.+ ....+++|
T Consensus 87 l~~L~~L~Ls~n-~i~~i~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L 162 (440)
T 3zyj_A 87 LRHLEILQLSRN-HIRTIEIGA--FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSL 162 (440)
T ss_dssp CSSCCEEECCSS-CCCEECGGG--GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTC
T ss_pred CCCCCEEECCCC-cCCccChhh--ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCccc
Confidence 577888888887 666654322 134667777776432 2223445667777777654 3444433 34456666
Q ss_pred cEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEE------------eccccCC---CCCCccCCCccceeeccc
Q 045852 76 TKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITEL------------VVASEGD---AANDEIIFPKLGYLELHR 140 (211)
Q Consensus 76 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~------------~~~~~~~---~~~~~~~~~~L~~L~l~~ 140 (211)
++|+++++..+..+.. .....+++|++|+++++. ++.+ .+..... ....-..+++|+.|.+.+
T Consensus 163 ~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 240 (440)
T 3zyj_A 163 RRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240 (440)
T ss_dssp CEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CEeCCCCCCCcceeCc-chhhcccccCeecCCCCc-CccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence 6666666665555432 123455666666665542 2221 0000000 000011255666776665
Q ss_pred cccccccccCcccccCCCcceeeeccCCCCeeccCCC-cCCCCccEEEeccCC
Q 045852 141 LQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGV-FSAPRLKEVCLNDIE 192 (211)
Q Consensus 141 c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~-~~~~~L~~l~i~~c~ 192 (211)
+ .++.+... ....+++|++|+++++ +++.++... ..+++|+.|++.+.+
T Consensus 241 n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 241 S-QIQVIERN-AFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp C-CCCEECTT-SSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred C-ceeEEChh-hhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 5 34444332 2345688888888887 566666543 456888898887644
No 9
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.33 E-value=2.6e-11 Score=97.04 Aligned_cols=172 Identities=17% Similarity=0.084 Sum_probs=113.0
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccCCch---------------------hhhcCCccEEecccCc
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNSKL---------------------NTVFQNLETLSAHFCL 60 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~~~---------------------~~~l~~L~~L~l~~c~ 60 (211)
+++|+.|+++++ .++.+.. ...+++|++|++....... ...+++|++|.++++
T Consensus 57 l~~L~~L~Ls~n-~l~~~~~----~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N- 130 (317)
T 3o53_A 57 FTKLELLNLSSN-VLYETLD----LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN- 130 (317)
T ss_dssp CTTCCEEECTTS-CCEEEEE----ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSS-
T ss_pred CCcCCEEECCCC-cCCcchh----hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCC-
Confidence 577888888887 5554432 2346667776653221111 123556666666654
Q ss_pred cccccCC-CCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeecc
Q 045852 61 NLTNLMP-SSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELH 139 (211)
Q Consensus 61 ~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 139 (211)
.++.+.+ ....+++|++|+++++. +....+......+++|++|+++++. ++.+ . ....+++|+.|+++
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~-~--------~~~~l~~L~~L~Ls 199 (317)
T 3o53_A 131 KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDV-K--------GQVVFAKLKTLDLS 199 (317)
T ss_dssp CCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEE-E--------CCCCCTTCCEEECC
T ss_pred CCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCc-Cccc-c--------cccccccCCEEECC
Confidence 3333332 44567888888888763 4444333344567888888888775 5554 1 12237899999998
Q ss_pred ccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCCCc
Q 045852 140 RLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIEKL 194 (211)
Q Consensus 140 ~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~~l 194 (211)
++ .++.++.. ...+++|++|+++++ +++.+|.....+++|+.|++.+++-.
T Consensus 200 ~N-~l~~l~~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 200 SN-KLAFMGPE--FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp SS-CCCEECGG--GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred CC-cCCcchhh--hcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 87 45665543 456799999999999 67788988878899999999998765
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.32 E-value=2.9e-11 Score=100.90 Aligned_cols=180 Identities=18% Similarity=0.110 Sum_probs=111.8
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEcc-----CCchhhhcCCccEEecccCccccccCC-CCCCCCCc
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQ-----NSKLNTVFQNLETLSAHFCLNLTNLMP-SSASFRCL 75 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~-----~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L 75 (211)
.++++.|+++++ +++.+.... ...+++|++|++... +......+++|++|+++++ +++.+.+ ....+++|
T Consensus 63 ~~~l~~L~L~~n-~i~~~~~~~--~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 138 (440)
T 3zyj_A 63 STNTRLLNLHEN-QIQIIKVNS--FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKL 138 (440)
T ss_dssp CTTCSEEECCSC-CCCEECTTT--TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSC
T ss_pred CCCCcEEEccCC-cCCeeCHHH--hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccC
Confidence 357899999998 788775432 246889999998543 2234567899999999986 6777665 46789999
Q ss_pred cEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccC-C--------------CC-CCccCCCccceeecc
Q 045852 76 TKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEG-D--------------AA-NDEIIFPKLGYLELH 139 (211)
Q Consensus 76 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~-~--------------~~-~~~~~~~~L~~L~l~ 139 (211)
++|+++++. ++.+.+ .....+++|++|++.++..+..+ ....- . .. .....+++|+.|+++
T Consensus 139 ~~L~L~~N~-i~~~~~-~~~~~l~~L~~L~l~~~~~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls 215 (440)
T 3zyj_A 139 KELWLRNNP-IESIPS-YAFNRIPSLRRLDLGELKRLSYI-SEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLS 215 (440)
T ss_dssp CEEECCSCC-CCEECT-TTTTTCTTCCEEECCCCTTCCEE-CTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECT
T ss_pred ceeeCCCCc-ccccCH-HHhhhCcccCEeCCCCCCCccee-CcchhhcccccCeecCCCCcCccccccCCCcccCEEECC
Confidence 999999875 444432 24568999999999998888776 32100 0 00 001113344444444
Q ss_pred ccccccccccCcccccCCCcceeeeccCCCCeec-cCCCcCCCCccEEEeccC
Q 045852 140 RLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIF-CGGVFSAPRLKEVCLNDI 191 (211)
Q Consensus 140 ~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-~~~~~~~~~L~~l~i~~c 191 (211)
++ .++.+..+ ....+++|++|++.++. ++.+ +..+..+++|+.|++.++
T Consensus 216 ~N-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 216 GN-HLSAIRPG-SFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp TS-CCCEECTT-TTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTS
T ss_pred CC-ccCccChh-hhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCC
Confidence 43 23333221 22345566666666653 3333 333445577777777665
No 11
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.31 E-value=3.1e-11 Score=101.06 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=23.1
Q ss_pred cCCCcceeeeccCCCCeeccCCC-cCCCCccEEEeccCC
Q 045852 155 KFPSLCDLSVSACPKMKIFCGGV-FSAPRLKEVCLNDIE 192 (211)
Q Consensus 155 ~~~~L~~L~i~~c~~l~~l~~~~-~~~~~L~~l~i~~c~ 192 (211)
.+++|+.|+++++ +++.++... ..+++|+.|++.+++
T Consensus 264 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 264 GLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 4567777777776 455555433 345777888776644
No 12
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.31 E-value=1.1e-10 Score=92.58 Aligned_cols=136 Identities=15% Similarity=0.065 Sum_probs=78.0
Q ss_pred hhhcCCccEEecccCccccccC-CCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCC
Q 045852 45 NTVFQNLETLSAHFCLNLTNLM-PSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDA 123 (211)
Q Consensus 45 ~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 123 (211)
...+++|++|+++++. +.... .....+++|++|+++++.--.... +.....+++|++|+++++. +..+ ...
T Consensus 122 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~-~~~---- 193 (306)
T 2z66_A 122 FLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQ-LEQL-SPT---- 193 (306)
T ss_dssp TTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTSC-CCEE-CTT----
T ss_pred hhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccc-hhHHhhCcCCCEEECCCCC-cCCc-CHH----
Confidence 3455566666665553 22222 234456666666666654222111 1133566677777776653 4443 110
Q ss_pred CCCccCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCC-CCccEEEeccCC
Q 045852 124 ANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSA-PRLKEVCLNDIE 192 (211)
Q Consensus 124 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~-~~L~~l~i~~c~ 192 (211)
.-..+++|+.|+++++. ++++... ....+++|++|++++++--...+...... ++|++|++.+++
T Consensus 194 --~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 194 --AFNSLSSLQVLNMSHNN-FFSLDTF-PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp --TTTTCTTCCEEECTTSC-CSBCCSG-GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred --HhcCCCCCCEEECCCCc-cCccChh-hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 11236788888888763 4444332 23457899999999996544455555555 489999998865
No 13
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.30 E-value=4.9e-11 Score=93.37 Aligned_cols=172 Identities=18% Similarity=0.132 Sum_probs=122.4
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccCC---chhhhcCCccEEecccCccccccCCC-CCCCCCccE
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNS---KLNTVFQNLETLSAHFCLNLTNLMPS-SASFRCLTK 77 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~---~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~ 77 (211)
+++|+.|.+.++ +++.+. ....+++|++|++..... .....+++|++|.++++ .++.+.+. ...+++|++
T Consensus 40 l~~L~~L~l~~~-~i~~~~----~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 40 LNSIDQIIANNS-DIKSVQ----GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HTTCCEEECTTS-CCCCCT----TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred ccceeeeeeCCC-Cccccc----ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCE
Confidence 467889999888 566543 234689999999854332 34567899999999987 56666554 467899999
Q ss_pred EeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccCC
Q 045852 78 LRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFP 157 (211)
Q Consensus 78 L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 157 (211)
|+++++. ++.+.+ .....+++|++|+++++. +..+ ... .-..+++|+.|++.++ .++.+... ....++
T Consensus 114 L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~-~~~------~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~ 181 (272)
T 3rfs_A 114 LVLVENQ-LQSLPD-GVFDKLTNLTYLNLAHNQ-LQSL-PKG------VFDKLTNLTELDLSYN-QLQSLPEG-VFDKLT 181 (272)
T ss_dssp EECTTSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCC-CTT------TTTTCTTCCEEECCSS-CCCCCCTT-TTTTCT
T ss_pred EECCCCc-CCccCH-HHhccCCCCCEEECCCCc-cCcc-CHH------HhccCccCCEEECCCC-CcCccCHH-HhcCCc
Confidence 9999975 444432 235789999999999884 5444 210 0123789999999987 45655442 234579
Q ss_pred CcceeeeccCCCCeeccCC-CcCCCCccEEEeccCC
Q 045852 158 SLCDLSVSACPKMKIFCGG-VFSAPRLKEVCLNDIE 192 (211)
Q Consensus 158 ~L~~L~i~~c~~l~~l~~~-~~~~~~L~~l~i~~c~ 192 (211)
+|++|+++++. ++.++.. ...+++|+.|++.+++
T Consensus 182 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 182 QLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp TCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCC
Confidence 99999999995 5555554 4567999999998754
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=4.9e-11 Score=103.30 Aligned_cols=102 Identities=16% Similarity=0.091 Sum_probs=53.7
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEc-----cCCchhhhcCCccEEecccCccccccCCCC-CCCCCc
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWE-----QNSKLNTVFQNLETLSAHFCLNLTNLMPSS-ASFRCL 75 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~-----~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L 75 (211)
|++|+.|+++++ +++.+... ....+++|++|++.. .+......+++|++|+++++ .++.+++.. ..+++|
T Consensus 74 l~~L~~L~L~~n-~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 74 FRQVELLNLNDL-QIEEIDTY--AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKL 149 (597)
T ss_dssp CCCCSEEECTTS-CCCEECTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCCCcEEECCCC-CCCCCChH--HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCC
Confidence 466777777776 55555432 123466677776633 22223355666777776665 444444433 456666
Q ss_pred cEEeeccCccchhccchHHHhccCCCcEEEEeec
Q 045852 76 TKLRVWACEHLINLVASSAAKNLVQLVHVSVSEC 109 (211)
Q Consensus 76 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 109 (211)
++|+++++. +....+ ..+..+++|++|+++++
T Consensus 150 ~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 150 TTLSMSNNN-LERIED-DTFQATTSLQNLQLSSN 181 (597)
T ss_dssp CEEECCSSC-CCBCCT-TTTTTCTTCCEEECTTS
T ss_pred CEEEeeCCc-CCCCCh-hhhhcCCcCcEEECcCC
Confidence 666666653 222221 12345555555555543
No 15
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.29 E-value=4.4e-11 Score=95.38 Aligned_cols=172 Identities=15% Similarity=0.142 Sum_probs=81.0
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccCC---chhhhcCCccEEecccCccccccCCCCCCCCCccEE
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNS---KLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKL 78 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~---~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L 78 (211)
|++|+.|+++++ +++.+. ....+++|++|++..... .....+++|++|+++++. ++.+ +....+++|++|
T Consensus 40 l~~L~~L~l~~~-~i~~l~----~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTTIE----GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNP-LKNV-SAIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTS-CCCCCT----TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCC-CSCC-GGGTTCTTCCEE
T ss_pred cCCcCEEEeeCC-CccCch----hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCc-CCCc-hhhcCCCCCCEE
Confidence 345677777766 555442 123456666666533221 114455666666666553 4433 234455566666
Q ss_pred eeccCccchhccchHHHhccCCCcEEEEeecCCCcEEecc-------------ccCCC-CCCccCCCccceeeccccccc
Q 045852 79 RVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVA-------------SEGDA-ANDEIIFPKLGYLELHRLQSL 144 (211)
Q Consensus 79 ~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~-------------~~~~~-~~~~~~~~~L~~L~l~~c~~l 144 (211)
+++++. ++.+. ....+++|++|+++++. +..+ .. ..... ......+++|+.|++.++ .+
T Consensus 113 ~l~~n~-l~~~~---~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l 185 (308)
T 1h6u_A 113 DLTSTQ-ITDVT---PLAGLSNLQVLYLDLNQ-ITNI-SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN-KI 185 (308)
T ss_dssp ECTTSC-CCCCG---GGTTCTTCCEEECCSSC-CCCC-GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CC
T ss_pred ECCCCC-CCCch---hhcCCCCCCEEECCCCc-cCcC-ccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCC-cc
Confidence 665543 33332 23455555555555442 2221 00 00000 000112455556555554 23
Q ss_pred cccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 145 TTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 145 ~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
+++.. ...+++|++|+++++ ++..++. ...+++|+.|++.+++
T Consensus 186 ~~~~~---l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 186 SDISP---LASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp CCCGG---GGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred CcChh---hcCCCCCCEEEccCC-ccCcccc-ccCCCCCCEEEccCCe
Confidence 33321 234566666666666 3344432 3445666666666543
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.28 E-value=6.8e-11 Score=99.48 Aligned_cols=77 Identities=26% Similarity=0.162 Sum_probs=34.8
Q ss_pred CCccEEEeccccccceecccccCcccccCccEEEEEcc-----CCchhhhcCCccEEecccCccccccCCC-CCCCCCcc
Q 045852 3 PNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQ-----NSKLNTVFQNLETLSAHFCLNLTNLMPS-SASFRCLT 76 (211)
Q Consensus 3 ~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~-----~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~ 76 (211)
++++.|+++++ +++.+.... ...+++|++|++... .......+++|++|+++++ .++.+++. ...+++|+
T Consensus 32 ~~l~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQDE--FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLT 107 (477)
T ss_dssp TTCSEEECCSS-CCCEECTTT--TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCC
T ss_pred CCCcEEECCCC-ccceECHhH--ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCC
Confidence 34566666665 555543211 123555555554321 1122344555555555543 23333322 23445555
Q ss_pred EEeeccC
Q 045852 77 KLRVWAC 83 (211)
Q Consensus 77 ~L~l~~c 83 (211)
+|+++++
T Consensus 108 ~L~Ls~n 114 (477)
T 2id5_A 108 KLDISEN 114 (477)
T ss_dssp EEECTTS
T ss_pred EEECCCC
Confidence 5555544
No 17
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.28 E-value=8.6e-11 Score=98.36 Aligned_cols=181 Identities=18% Similarity=0.082 Sum_probs=103.5
Q ss_pred CCccEEEeccccccceecccccCcccccCccEEEEEcc-----CCchhhhcCCccEEecccCccccccCCC-CCCCCCcc
Q 045852 3 PNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQ-----NSKLNTVFQNLETLSAHFCLNLTNLMPS-SASFRCLT 76 (211)
Q Consensus 3 ~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~-----~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~ 76 (211)
++++.|+++++ +++.+.... ...+++|++|++... +......+++|++|+++++ .++.+++. ...+++|+
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~--~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADT--FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTT--TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCC
T ss_pred CCccEEECcCC-cCceECHHH--cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCC
Confidence 46788888877 666664322 235778888876432 2234456778888888775 45555443 45577788
Q ss_pred EEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccC-C---------------CCCCccCCCccceeeccc
Q 045852 77 KLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEG-D---------------AANDEIIFPKLGYLELHR 140 (211)
Q Consensus 77 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~-~---------------~~~~~~~~~~L~~L~l~~ 140 (211)
+|+++++. ++.+++ .....+++|++|++++|..+..+ ....- . .......+++|+.|++++
T Consensus 151 ~L~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 151 ELWLRNNP-IESIPS-YAFNRVPSLMRLDLGELKKLEYI-SEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSG 227 (452)
T ss_dssp EEECCSCC-CCEECT-TTTTTCTTCCEEECCCCTTCCEE-CTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTT
T ss_pred EEECCCCC-cceeCH-hHHhcCCcccEEeCCCCCCcccc-ChhhccCCCCCCEEECCCCcccccccccccccccEEECcC
Confidence 88887764 333331 23456777777777777666665 21100 0 000111244555555555
Q ss_pred cccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 141 LQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 141 c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
+ .++.+..+ ....+++|++|++.++.--...+..+..+++|+.|++.++.
T Consensus 228 N-~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 228 N-HFPEIRPG-SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp S-CCSEECGG-GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred C-cCcccCcc-cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 4 23333221 23356777777777774333334445566888888887763
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.28 E-value=4.1e-11 Score=96.64 Aligned_cols=37 Identities=11% Similarity=0.115 Sum_probs=24.6
Q ss_pred ccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 154 FKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 154 ~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
..+++|++|++++| +++.++. ...+++|++|++.+|.
T Consensus 218 ~~~~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 218 ANMTRLNSLKIGNN-KITDLSP-LANLSQLTWLEIGTNQ 254 (347)
T ss_dssp GGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC
T ss_pred hcCCcCCEEEccCC-ccCCCcc-hhcCCCCCEEECCCCc
Confidence 34577777777777 3444444 4556788888887764
No 19
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.28 E-value=1.2e-10 Score=91.65 Aligned_cols=175 Identities=21% Similarity=0.115 Sum_probs=124.1
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccC------CchhhhcCCccEEecccCccccccC-CCCCCCCC
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQN------SKLNTVFQNLETLSAHFCLNLTNLM-PSSASFRC 74 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~------~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~ 74 (211)
+++|++|+++++ .++.+... ....+++|++|++.... ......+++|++|+++++. ++.+. .....+++
T Consensus 55 ~~~L~~L~l~~n-~l~~~~~~--~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~ 130 (285)
T 1ozn_A 55 CRNLTILWLHSN-VLARIDAA--AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAA 130 (285)
T ss_dssp CTTCCEEECCSS-CCCEECTT--TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTT
T ss_pred CCCCCEEECCCC-ccceeCHh--hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcC
Confidence 678999999998 77776432 22458899999986543 2345678999999999874 55553 34567999
Q ss_pred ccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccc
Q 045852 75 LTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTF 154 (211)
Q Consensus 75 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 154 (211)
|++|+++++. ++.+.+ .....+++|++|+++++. ++.+ ... .-..+++|+.|++.++. ++.+... ...
T Consensus 131 L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~-~~~------~~~~l~~L~~L~l~~n~-l~~~~~~-~~~ 198 (285)
T 1ozn_A 131 LQYLYLQDNA-LQALPD-DTFRDLGNLTHLFLHGNR-ISSV-PER------AFRGLHSLDRLLLHQNR-VAHVHPH-AFR 198 (285)
T ss_dssp CCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCEE-CTT------TTTTCTTCCEEECCSSC-CCEECTT-TTT
T ss_pred CCEEECCCCc-ccccCH-hHhccCCCccEEECCCCc-cccc-CHH------HhcCccccCEEECCCCc-ccccCHh-Hcc
Confidence 9999999875 444432 235689999999999874 6665 211 01237899999999874 4554332 244
Q ss_pred cCCCcceeeeccCCCCeeccCC-CcCCCCccEEEeccCCC
Q 045852 155 KFPSLCDLSVSACPKMKIFCGG-VFSAPRLKEVCLNDIEK 193 (211)
Q Consensus 155 ~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~l~i~~c~~ 193 (211)
.+++|++|+++++ +++.++.. +..+++|++|++.+++-
T Consensus 199 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 199 DLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred CcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 6799999999999 45555532 45679999999988753
No 20
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.26 E-value=1.1e-10 Score=91.40 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=32.2
Q ss_pred cCCCcceeeeccCCCCeeccCCC-cCCCCccEEEec------cCCCchhh
Q 045852 155 KFPSLCDLSVSACPKMKIFCGGV-FSAPRLKEVCLN------DIEKLFYL 197 (211)
Q Consensus 155 ~~~~L~~L~i~~c~~l~~l~~~~-~~~~~L~~l~i~------~c~~l~~~ 197 (211)
...+|++|+++++. ++.+|... ..+++|++|++. +|+.+.++
T Consensus 198 ~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l 246 (276)
T 2z62_A 198 KEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 246 (276)
T ss_dssp CSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHH
T ss_pred CCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCcccccCCchHHH
Confidence 34589999999985 77777654 557999999998 57777655
No 21
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.26 E-value=9.1e-11 Score=89.97 Aligned_cols=175 Identities=15% Similarity=0.096 Sum_probs=114.1
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEc-cC-----CchhhhcCCccEEecccCccccccCCCCCCCCCc
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWE-QN-----SKLNTVFQNLETLSAHFCLNLTNLMPSSASFRCL 75 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~-~~-----~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L 75 (211)
+++|++|+++++..++.+.... ...+++|++|++.. .. ......+++|++|+++++ .++.++ ....+++|
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~--f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp-~~~~l~~L 129 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHS--FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFP-DLTKVYST 129 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTT--EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCC-CCTTCCBC
T ss_pred CCCCcEEeCCCCCCcceeCHhH--cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCcccc-cccccccc
Confidence 5778888888884477765422 23577888888864 22 223456788888888876 355543 35666777
Q ss_pred c---EEeeccCccchhccchHHHhccCCCc-EEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCc
Q 045852 76 T---KLRVWACEHLINLVASSAAKNLVQLV-HVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSAN 151 (211)
Q Consensus 76 ~---~L~l~~c~~l~~~~~~~~~~~l~~L~-~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 151 (211)
+ .|++++++.++.+++. ....+++|+ +|+++++. ++.+ .. .....++|+.|++.+++.++.++..
T Consensus 130 ~~L~~L~l~~N~~l~~i~~~-~~~~l~~L~~~L~l~~n~-l~~i-~~-------~~~~~~~L~~L~L~~n~~l~~i~~~- 198 (239)
T 2xwt_C 130 DIFFILEITDNPYMTSIPVN-AFQGLCNETLTLKLYNNG-FTSV-QG-------YAFNGTKLDAVYLNKNKYLTVIDKD- 198 (239)
T ss_dssp CSEEEEEEESCTTCCEECTT-TTTTTBSSEEEEECCSCC-CCEE-CT-------TTTTTCEEEEEECTTCTTCCEECTT-
T ss_pred ccccEEECCCCcchhhcCcc-cccchhcceeEEEcCCCC-Cccc-CH-------hhcCCCCCCEEEcCCCCCcccCCHH-
Confidence 6 8888887666666532 245788888 88887654 5555 21 1111357888888887667766543
Q ss_pred ccccC-CCcceeeeccCCCCeeccCCCcCCCCccEEEeccCCCc
Q 045852 152 YTFKF-PSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIEKL 194 (211)
Q Consensus 152 ~~~~~-~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~~l 194 (211)
....+ ++|+.|+++++ +++.+|.. .+++|++|.+.++..|
T Consensus 199 ~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 199 AFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp TTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTTC---
T ss_pred HhhccccCCcEEECCCC-ccccCChh--HhccCceeeccCccCC
Confidence 23345 78888888886 56667764 5688888888887653
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.26 E-value=3.3e-11 Score=97.24 Aligned_cols=166 Identities=16% Similarity=0.153 Sum_probs=84.9
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccCC---chhhhcCCccEEecccCccccccCCCCCCCCCccEE
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNS---KLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKL 78 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~---~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L 78 (211)
+++|+.|++++| .++.+.. ...+++|++|++..... .....+++|+.|.+.++ .+..+.+ ...+++|++|
T Consensus 154 l~~L~~L~l~~~-~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~~L~~L 226 (347)
T 4fmz_A 154 MTGLNYLTVTES-KVKDVTP----IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVN-QITDITP-VANMTRLNSL 226 (347)
T ss_dssp CTTCCEEECCSS-CCCCCGG----GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSS-CCCCCGG-GGGCTTCCEE
T ss_pred CCCCcEEEecCC-CcCCchh----hccCCCCCEEEccCCcccccccccCCCccceeecccC-CCCCCch-hhcCCcCCEE
Confidence 567888888887 5554432 24567777777643222 12455666777777665 3333322 4456666667
Q ss_pred eeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccCCC
Q 045852 79 RVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPS 158 (211)
Q Consensus 79 ~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 158 (211)
++++|. ++...+ ...+++|++|+++++. +..+ . ....+++|+.|+++++ .++++.. ...+++
T Consensus 227 ~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~-~--------~~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~ 288 (347)
T 4fmz_A 227 KIGNNK-ITDLSP---LANLSQLTWLEIGTNQ-ISDI-N--------AVKDLTKLKMLNVGSN-QISDISV---LNNLSQ 288 (347)
T ss_dssp ECCSSC-CCCCGG---GTTCTTCCEEECCSSC-CCCC-G--------GGTTCTTCCEEECCSS-CCCCCGG---GGGCTT
T ss_pred EccCCc-cCCCcc---hhcCCCCCEEECCCCc-cCCC-h--------hHhcCCCcCEEEccCC-ccCCChh---hcCCCC
Confidence 666653 233321 4566666666666653 2222 0 0112455555555554 3333311 223455
Q ss_pred cceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 159 LCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 159 L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
|++|++++|+--...+..+..+++|++|++.+|+
T Consensus 289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred CCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 5555555553222222223344555555555554
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.26 E-value=9.9e-11 Score=101.18 Aligned_cols=136 Identities=16% Similarity=0.112 Sum_probs=81.8
Q ss_pred hhhcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCC
Q 045852 45 NTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAA 124 (211)
Q Consensus 45 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 124 (211)
...+++|++|++++|.-....+.....+++|++|+++++.--.... +...+.+++|++|++++|. +..+ ...
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~-~~~----- 491 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL-SNVFANTTNLTFLDLSKCQ-LEQI-SWG----- 491 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTSC-CCEE-CTT-----
T ss_pred hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcch-HHhhccCCCCCEEECCCCc-CCcc-Chh-----
Confidence 3455666666666654322233345566677777776664322111 1134566777777777663 4444 110
Q ss_pred CCccCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCC-CccEEEeccCC
Q 045852 125 NDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAP-RLKEVCLNDIE 192 (211)
Q Consensus 125 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~-~L~~l~i~~c~ 192 (211)
.-..+++|+.|+++++ .++++... ....+++|++|+++++. ++.+|.+....+ +|+++++.+++
T Consensus 492 -~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 492 -VFDTLHRLQLLNMSHN-NLLFLDSS-HYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp -TTTTCTTCCEEECCSS-CCSCEEGG-GTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred -hhcccccCCEEECCCC-cCCCcCHH-HccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 1123678888888887 44444322 23457889999999984 778888766666 59999997754
No 24
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.25 E-value=1.8e-10 Score=90.03 Aligned_cols=173 Identities=22% Similarity=0.172 Sum_probs=113.8
Q ss_pred CCccEEEeccccccceecccccCcccccCccEEEEEcc-----CCchhhhcCCccEEecccCccccccCCC-CCCCCCcc
Q 045852 3 PNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQ-----NSKLNTVFQNLETLSAHFCLNLTNLMPS-SASFRCLT 76 (211)
Q Consensus 3 ~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~-----~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~ 76 (211)
+++++|+++++ +++.+... ....+++|++|++... +......+++|++|.++++ .++.+.+. ...+++|+
T Consensus 37 ~~l~~L~l~~n-~l~~~~~~--~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 112 (270)
T 2o6q_A 37 ADTKKLDLQSN-KLSSLPSK--AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLA 112 (270)
T ss_dssp TTCSEEECCSS-CCSCCCTT--SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCC
T ss_pred CCCCEEECcCC-CCCeeCHH--HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCC
Confidence 35778888877 56655432 1235778888887432 2233456788888888776 45555443 35678888
Q ss_pred EEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccC
Q 045852 77 KLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKF 156 (211)
Q Consensus 77 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 156 (211)
+|+++++. ++.+.+ .....+++|++|+++++. +..+ ... .-..+++|+.|++.++ .++.+... ....+
T Consensus 113 ~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~-~~~------~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l 180 (270)
T 2o6q_A 113 ELRLDRNQ-LKSLPP-RVFDSLTKLTYLSLGYNE-LQSL-PKG------VFDKLTSLKELRLYNN-QLKRVPEG-AFDKL 180 (270)
T ss_dssp EEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCC-CTT------TTTTCTTCCEEECCSS-CCSCCCTT-TTTTC
T ss_pred EEECCCCc-cCeeCH-HHhCcCcCCCEEECCCCc-CCcc-CHh------HccCCcccceeEecCC-cCcEeChh-HhccC
Confidence 88888754 444432 234678889999888774 4443 110 0123788999999876 45555442 23457
Q ss_pred CCcceeeeccCCCCeeccCC-CcCCCCccEEEeccCC
Q 045852 157 PSLCDLSVSACPKMKIFCGG-VFSAPRLKEVCLNDIE 192 (211)
Q Consensus 157 ~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~l~i~~c~ 192 (211)
++|++|+++++ +++.++.+ +..+++|+.|++.+++
T Consensus 181 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 181 TELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 89999999998 66677765 4457999999997754
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.25 E-value=5.8e-11 Score=102.63 Aligned_cols=181 Identities=17% Similarity=0.022 Sum_probs=93.7
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccC-------CchhhhcCCccEEecccCccccccCCCCCCCCC
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQN-------SKLNTVFQNLETLSAHFCLNLTNLMPSSASFRC 74 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~-------~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~ 74 (211)
+++|+.|+++++..+..+ ....+++|++|++.... ......+++|++|+++++. +..++.....+++
T Consensus 327 l~~L~~L~l~~n~~~~~~-----~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~ 400 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGSISF-----KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEE 400 (606)
T ss_dssp CSSCCEEEEESCSSCEEC-----CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTT
T ss_pred CCccceeeccCCcCccch-----hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCC
Confidence 567788888777444433 22346677777653221 2233456666666666653 4444444555566
Q ss_pred ccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCC------------------CCCCccCCCcccee
Q 045852 75 LTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGD------------------AANDEIIFPKLGYL 136 (211)
Q Consensus 75 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~------------------~~~~~~~~~~L~~L 136 (211)
|+.|+++++.-.. ..+......+++|++|++++|. +.......-+. .+..-..+++|+.|
T Consensus 401 L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 478 (606)
T 3vq2_A 401 LQHLDFQHSTLKR-VTEFSAFLSLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478 (606)
T ss_dssp CCEEECTTSEEES-TTTTTTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCeeECCCCccCC-ccChhhhhccccCCEEECcCCC-CCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence 6666666553222 1111123455555555555543 22210000000 00011235667777
Q ss_pred eccccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 137 ELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 137 ~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
+++++ .++.+... ....+++|++|++++++-....|..+..+++|+.|++.+|.
T Consensus 479 ~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 479 DLSKC-QLEQISWG-VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp ECTTS-CCCEECTT-TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred ECCCC-cCCccChh-hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 77766 34443322 23356778888887775444446656667778888887775
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.25 E-value=9.1e-11 Score=101.42 Aligned_cols=183 Identities=18% Similarity=0.115 Sum_probs=89.2
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccC-----CchhhhcCCccEEecccCccccccCC-CCCCCCCc
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQN-----SKLNTVFQNLETLSAHFCLNLTNLMP-SSASFRCL 75 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~-----~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L 75 (211)
+++|+.|+++++ +++.+... ...+++|++|++.... ......+++|++|.++++.....+++ ....+++|
T Consensus 277 l~~L~~L~l~~n-~l~~lp~~---l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 277 FSGLQELDLTAT-HLSELPSG---LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp CTTCSEEECTTS-CCSCCCSS---CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred ccCCCEEeccCC-ccCCCChh---hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 456677777766 55544322 2346677777764322 12345667777777776643333332 24566777
Q ss_pred cEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEecccc-CC-----------------CCC-CccCCCcccee
Q 045852 76 TKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASE-GD-----------------AAN-DEIIFPKLGYL 136 (211)
Q Consensus 76 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~-~~-----------------~~~-~~~~~~~L~~L 136 (211)
++|+++++.--...........+++|++|+++++. +..+ .... .. ... .-..+++|+.|
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSL-KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEE-CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcC-CHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 77777765432211001134566777777776653 3332 1100 00 000 01124555555
Q ss_pred eccccccccccccCcccccCCCcceeeeccCCCCe-ecc--CCCcCCCCccEEEeccCC
Q 045852 137 ELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMK-IFC--GGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 137 ~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~-~l~--~~~~~~~~L~~l~i~~c~ 192 (211)
+++++. +...... ....+++|++|++++++--. .++ .....+++|+.|++.+|.
T Consensus 431 ~l~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 431 NLSHSL-LDISSEQ-LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp ECTTCC-CBTTCTT-TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred ECCCCc-cCCcCHH-HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 555542 2222111 12345666677766664322 111 223445677777777664
No 27
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.24 E-value=8.1e-11 Score=99.65 Aligned_cols=172 Identities=17% Similarity=0.081 Sum_probs=111.0
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccCCch---------------------hhhcCCccEEecccCc
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNSKL---------------------NTVFQNLETLSAHFCL 60 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~~~---------------------~~~l~~L~~L~l~~c~ 60 (211)
+++|+.|+++++ .++.+.+ ...+++|++|++....... ...+++|++|+++++
T Consensus 57 l~~L~~L~Ls~N-~l~~~~~----l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N- 130 (487)
T 3oja_A 57 FTKLELLNLSSN-VLYETLD----LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN- 130 (487)
T ss_dssp CTTCCEEECTTS-CCEEEEE----CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSS-
T ss_pred CCCCCEEEeeCC-CCCCCcc----cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCC-
Confidence 578888888887 5655432 2456677777653321111 123455666666554
Q ss_pred cccccC-CCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeecc
Q 045852 61 NLTNLM-PSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELH 139 (211)
Q Consensus 61 ~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 139 (211)
.++.+. .....+++|+.|+++++. +....+......+++|++|+++++. +..+ . ....+++|+.|+++
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~-~--------~~~~l~~L~~L~Ls 199 (487)
T 3oja_A 131 KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDV-K--------GQVVFAKLKTLDLS 199 (487)
T ss_dssp CCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEE-E--------CCCCCTTCCEEECC
T ss_pred CCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCc-cccc-c--------ccccCCCCCEEECC
Confidence 233332 244557777777777753 3333333334467888888887765 4444 1 12237889999998
Q ss_pred ccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCCCc
Q 045852 140 RLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIEKL 194 (211)
Q Consensus 140 ~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~~l 194 (211)
++ .+++++.. ...+++|+.|+++++ .+..+|..+..+++|+.+++.+++-.
T Consensus 200 ~N-~l~~~~~~--~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 200 SN-KLAFMGPE--FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp SS-CCCEECGG--GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CC-CCCCCCHh--HcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCc
Confidence 86 46666553 446799999999998 56778888778899999999998755
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.24 E-value=5e-11 Score=94.62 Aligned_cols=180 Identities=15% Similarity=0.093 Sum_probs=86.6
Q ss_pred CCccEEEeccccccceecccccCcccccCccEEEEEccCC-------chhhhcCCccEEecccCccccccCCCCCCCCCc
Q 045852 3 PNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNS-------KLNTVFQNLETLSAHFCLNLTNLMPSSASFRCL 75 (211)
Q Consensus 3 ~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~-------~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L 75 (211)
++|++|+++++ +++.+.... ...+++|++|++..... .....+++|++|+++++ .+..++.....+++|
T Consensus 28 ~~l~~L~L~~n-~l~~i~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESN-KLQSLPHGV--FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQL 103 (306)
T ss_dssp TTCCEEECCSS-CCCCCCTTT--TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTC
T ss_pred CCCCEEECCCC-ccCccCHhH--hhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCC
Confidence 46788888877 566554321 13466777777643221 12234566666666655 233343334445555
Q ss_pred cEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEecccc-CC------------------CCCCccCCCcccee
Q 045852 76 TKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASE-GD------------------AANDEIIFPKLGYL 136 (211)
Q Consensus 76 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~-~~------------------~~~~~~~~~~L~~L 136 (211)
++|+++++. ++..........+++|++|+++++. +..+ .... .. ....-..+++|+.|
T Consensus 104 ~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 104 EHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp CEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSC-CEEC-STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CEEECCCCc-ccccccchhhhhccCCCEEECCCCc-CCcc-chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 555555542 2222211123445555555554442 2111 0000 00 00011225566666
Q ss_pred eccccccccccccCcccccCCCcceeeeccCCCCeeccC-CCcCCCCccEEEeccCC
Q 045852 137 ELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCG-GVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 137 ~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~l~i~~c~ 192 (211)
+++++ .++++... ....+++|++|+++++. ++.++. ....+++|++|++.++.
T Consensus 181 ~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 181 DLSQC-QLEQLSPT-AFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp ECTTS-CCCEECTT-TTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC
T ss_pred ECCCC-CcCCcCHH-HhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC
Confidence 66655 33333221 12345677777777764 333333 23345777777777664
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.24 E-value=1.3e-10 Score=95.36 Aligned_cols=58 Identities=17% Similarity=0.119 Sum_probs=27.9
Q ss_pred CCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccC
Q 045852 130 FPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDI 191 (211)
Q Consensus 130 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c 191 (211)
+++|+.|++.++ .++.++.. ...+++|++|+++++ +++.+|.....+++|++|++.++
T Consensus 271 l~~L~~L~L~~n-~l~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 271 MQRLERLYISNN-RLVALNLY--GQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp CSSCCEEECCSS-CCCEEECS--SSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS
T ss_pred cccCCEEECCCC-cCcccCcc--cCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC
Confidence 556666666654 33443321 223455666666555 34444443333344444444443
No 30
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.23 E-value=1.9e-10 Score=91.02 Aligned_cols=149 Identities=21% Similarity=0.158 Sum_probs=88.7
Q ss_pred ccCccEEEEEccCCc---hhhhcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEE
Q 045852 29 LNKLEHLWLWEQNSK---LNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVS 105 (211)
Q Consensus 29 ~~~Lk~L~l~~~~~~---~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 105 (211)
+++|++|++...... ....+++|++|+++++ .++.++.....+++|+.|+++++. ++.+++ .....+++|++|+
T Consensus 54 l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~-~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 54 YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNR-LTSLPL-GALRGLGELQELY 130 (290)
T ss_dssp CTTCCEEECTTSCCCEEECCSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSC-CCCCCS-STTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCcccCCCCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCc-CcccCH-HHHcCCCCCCEEE
Confidence 455555554321111 1144566666666554 444554445566677777776643 333321 1345667777777
Q ss_pred EeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccE
Q 045852 106 VSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKE 185 (211)
Q Consensus 106 i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~ 185 (211)
++++. +..+ ... .-..+++|+.|++.+. .++.++.+ ....+++|++|+++++ +++.+|.+....++|+.
T Consensus 131 L~~N~-l~~~-~~~------~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~ 199 (290)
T 1p9a_G 131 LKGNE-LKTL-PPG------LLTPTPKLEKLSLANN-NLTELPAG-LLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPF 199 (290)
T ss_dssp CTTSC-CCCC-CTT------TTTTCTTCCEEECTTS-CCSCCCTT-TTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSE
T ss_pred CCCCC-CCcc-Chh------hcccccCCCEEECCCC-cCCccCHH-HhcCcCCCCEEECCCC-cCCccChhhcccccCCe
Confidence 76653 3333 110 0113678888888776 46666543 2335788999999988 57788888877889999
Q ss_pred EEeccC
Q 045852 186 VCLNDI 191 (211)
Q Consensus 186 l~i~~c 191 (211)
+++.+.
T Consensus 200 l~L~~N 205 (290)
T 1p9a_G 200 AFLHGN 205 (290)
T ss_dssp EECCSC
T ss_pred EEeCCC
Confidence 999753
No 31
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.23 E-value=1.9e-10 Score=93.21 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=31.6
Q ss_pred cCCCcceeeeccCCCCeeccCCC-cCCCCccEEEeccCCCc
Q 045852 155 KFPSLCDLSVSACPKMKIFCGGV-FSAPRLKEVCLNDIEKL 194 (211)
Q Consensus 155 ~~~~L~~L~i~~c~~l~~l~~~~-~~~~~L~~l~i~~c~~l 194 (211)
.+++|++|+++++ +++.+|.+. ..+++|++|++.+++-.
T Consensus 275 ~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 275 QISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 5688999999998 677888875 57799999999987633
No 32
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.22 E-value=1e-10 Score=100.13 Aligned_cols=133 Identities=17% Similarity=0.105 Sum_probs=78.1
Q ss_pred hhcCCccEEecccCccccccCC--CCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCC-cEEeccccCC
Q 045852 46 TVFQNLETLSAHFCLNLTNLMP--SSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKI-TELVVASEGD 122 (211)
Q Consensus 46 ~~l~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l-~~~~~~~~~~ 122 (211)
..+++|++|.+.++. +....+ ....+++|++|++++|.-....+ .....+++|++|++++|.-. ..+ ..
T Consensus 393 ~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~-p~---- 464 (570)
T 2z63_A 393 LGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--GIFNGLSSLEVLKMAGNSFQENFL-PD---- 464 (570)
T ss_dssp ETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECCT--TTTTTCTTCCEEECTTCEEGGGEE-CS----
T ss_pred cccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccch--hhhhcCCcCcEEECcCCcCccccc-hh----
Confidence 345556666665542 222222 34456677777777664332221 13456777777777766411 112 10
Q ss_pred CCCCccCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccC-CCcCCCCccEEEeccCC
Q 045852 123 AANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCG-GVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 123 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~l~i~~c~ 192 (211)
.-..+++|+.|+++++ .++++... ....+++|++|++++| +++.++. .+..+++|+.|++.+++
T Consensus 465 ---~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 465 ---IFTELRNLTFLDLSQC-QLEQLSPT-AFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ---CCTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---hhhcccCCCEEECCCC-ccccCChh-hhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 1223788888888887 34544332 2346789999999998 4555554 35567899999998844
No 33
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.22 E-value=6.5e-11 Score=94.48 Aligned_cols=179 Identities=17% Similarity=0.073 Sum_probs=97.7
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccCC----chhhhc-----CCccEEecccCccccccC-CCCCC
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNS----KLNTVF-----QNLETLSAHFCLNLTNLM-PSSAS 71 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~----~~~~~l-----~~L~~L~l~~c~~l~~l~-~~~~~ 71 (211)
+++|++|+++++ +++...+.......+++|++|++..... .....+ ++|++|+++++. +..+. ..+..
T Consensus 94 l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRV 171 (312)
T ss_dssp TSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCC
T ss_pred cCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhcc
Confidence 678999999988 6664332222124678899999864322 122334 889999998763 55554 45667
Q ss_pred CCCccEEeeccCccchhccchHHH--hccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeecccccccccccc
Q 045852 72 FRCLTKLRVWACEHLINLVASSAA--KNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCS 149 (211)
Q Consensus 72 l~~L~~L~l~~c~~l~~~~~~~~~--~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 149 (211)
+++|++|+++++.-.......... ..+++|++|+++++. +..+ ...... -...+++|+.|++++.. +++...
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~-~~~~~~---~~~~l~~L~~L~Ls~N~-l~~~~~ 245 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METP-SGVCSA---LAAARVQLQGLDLSHNS-LRDAAG 245 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCH-HHHHHH---HHHTTCCCSEEECTTSC-CCSSCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-Ccch-HHHHHH---HHhcCCCCCEEECCCCc-CCcccc
Confidence 888999998887643332111122 577888888887764 3311 000000 00114556666665542 333221
Q ss_pred CcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccC
Q 045852 150 ANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDI 191 (211)
Q Consensus 150 ~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c 191 (211)
......+++|++|+++++ +++.+|.... ++|++|++.++
T Consensus 246 ~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N 284 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN 284 (312)
T ss_dssp CSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS
T ss_pred hhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC
Confidence 011122355666666655 3445554433 55556555554
No 34
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.20 E-value=1.9e-10 Score=99.47 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=35.3
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccC-------CchhhhcCCccEEecccCccccccC-CCCCCCC
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQN-------SKLNTVFQNLETLSAHFCLNLTNLM-PSSASFR 73 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~-------~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~ 73 (211)
+++|+.|+++++.-...+... ....+++|++|++.... ......+++|++|+++++. +..+. .....++
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 400 (606)
T 3t6q_A 324 FPSLTHLSIKGNTKRLELGTG--CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECP 400 (606)
T ss_dssp CTTCSEEECCSCSSCCBCCSS--TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCT
T ss_pred cCcCCEEECCCCCcccccchh--hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCc
Confidence 466777777766222122211 11235566666553211 1123445555555555542 22222 2333445
Q ss_pred CccEEeeccC
Q 045852 74 CLTKLRVWAC 83 (211)
Q Consensus 74 ~L~~L~l~~c 83 (211)
+|++|+++++
T Consensus 401 ~L~~L~l~~n 410 (606)
T 3t6q_A 401 QLELLDLAFT 410 (606)
T ss_dssp TCSEEECTTC
T ss_pred cCCeEECCCC
Confidence 5555555544
No 35
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.20 E-value=2.5e-10 Score=85.05 Aligned_cols=149 Identities=16% Similarity=0.206 Sum_probs=99.6
Q ss_pred ccccCccEEEEEccCC---chhhhcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcE
Q 045852 27 HLLNKLEHLWLWEQNS---KLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVH 103 (211)
Q Consensus 27 ~~~~~Lk~L~l~~~~~---~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 103 (211)
..+++|++|++..... .....+++|++|.+++| .++.+ +.+..+++|++|+++++.--...+. ....+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIP--NLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSC--CCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccCh--hhcCCCCCCE
Confidence 4577888888864322 23567788899998888 55544 3566788899999988653221222 3467888999
Q ss_pred EEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCc
Q 045852 104 VSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRL 183 (211)
Q Consensus 104 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L 183 (211)
|+++++. +....+. .-..+++|+.|+++++..++.++. ...+++|++|++++|+ ++.++ ....+++|
T Consensus 117 L~Ls~n~-i~~~~~~-------~l~~l~~L~~L~L~~n~~i~~~~~---l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L 183 (197)
T 4ezg_A 117 LDISHSA-HDDSILT-------KINTLPKVNSIDLSYNGAITDIMP---LKTLPELKSLNIQFDG-VHDYR-GIEDFPKL 183 (197)
T ss_dssp EECCSSB-CBGGGHH-------HHTTCSSCCEEECCSCTBCCCCGG---GGGCSSCCEEECTTBC-CCCCT-TGGGCSSC
T ss_pred EEecCCc-cCcHhHH-------HHhhCCCCCEEEccCCCCccccHh---hcCCCCCCEEECCCCC-CcChH-HhccCCCC
Confidence 9888875 2221010 112378899999988865666642 4567889999998884 55555 45667889
Q ss_pred cEEEeccCC
Q 045852 184 KEVCLNDIE 192 (211)
Q Consensus 184 ~~l~i~~c~ 192 (211)
++|++.+.+
T Consensus 184 ~~L~l~~N~ 192 (197)
T 4ezg_A 184 NQLYAFSQT 192 (197)
T ss_dssp CEEEECBC-
T ss_pred CEEEeeCcc
Confidence 999988754
No 36
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.20 E-value=6.6e-11 Score=94.64 Aligned_cols=173 Identities=17% Similarity=0.079 Sum_probs=107.5
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccCCc---hhhhcCCccEEecccCccccccCCC----------
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNSK---LNTVFQNLETLSAHFCLNLTNLMPS---------- 68 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~~---~~~~l~~L~~L~l~~c~~l~~l~~~---------- 68 (211)
+++|++|+++++ +++.+.... ...+++|++|++...... ....+++|++|+++++ .++.+.+.
T Consensus 33 ~~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~L~~L~l~~ 108 (317)
T 3o53_A 33 AWNVKELDLSGN-PLSQISAAD--LAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN-YVQELLVGPSIETLHAAN 108 (317)
T ss_dssp GGGCSEEECTTS-CCCCCCHHH--HTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSS-EEEEEEECTTCCEEECCS
T ss_pred CCCCCEEECcCC-ccCcCCHHH--hhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCC-ccccccCCCCcCEEECCC
Confidence 468999999998 777664321 246889999998443221 2567899999999887 34433211
Q ss_pred -------CCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeecccc
Q 045852 69 -------SASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRL 141 (211)
Q Consensus 69 -------~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 141 (211)
...+++|+.|+++++. ++.+.+ .....+++|++|+++++. +..+.+..- ...+++|+.|+++++
T Consensus 109 n~l~~~~~~~~~~L~~L~l~~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~------~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 109 NNISRVSCSRGQGKKNIYLANNK-ITMLRD-LDEGCRSRVQYLDLKLNE-IDTVNFAEL------AASSDTLEHLNLQYN 179 (317)
T ss_dssp SCCSEEEECCCSSCEEEECCSSC-CCSGGG-BCTGGGSSEEEEECTTSC-CCEEEGGGG------GGGTTTCCEEECTTS
T ss_pred CccCCcCccccCCCCEEECCCCC-CCCccc-hhhhccCCCCEEECCCCC-CCcccHHHH------hhccCcCCEEECCCC
Confidence 1124555666665543 222221 123456777777776653 444311100 012678888888876
Q ss_pred ccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 142 QSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 142 ~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
. ++.+.. ...+++|++|+++++ +++.+|.....+++|++|++.++.
T Consensus 180 ~-l~~~~~---~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 180 F-IYDVKG---QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp C-CCEEEC---CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC
T ss_pred c-Cccccc---ccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCc
Confidence 3 555532 223688999999988 566777767777899999998874
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.20 E-value=6.9e-11 Score=94.42 Aligned_cols=185 Identities=14% Similarity=0.033 Sum_probs=111.8
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccC-----CchhhhcCCccEEecccCccccccCCCCCCCCCcc
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQN-----SKLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLT 76 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~-----~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~ 76 (211)
+++|+.|+++++.++....+. ....+++|++|++.... ......+++|++|+++++.--..++..+..+++|+
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 152 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPP--AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCG--GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred CCCCCeeeCCCCCcccccCCh--hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC
Confidence 678999999964466644322 22468899999885422 23456788899999887642224444566788888
Q ss_pred EEeeccCccchhccchHHHhccC-CCcEEEEeecCCCcEEeccccC----------------CCCCCccCCCccceeecc
Q 045852 77 KLRVWACEHLINLVASSAAKNLV-QLVHVSVSECSKITELVVASEG----------------DAANDEIIFPKLGYLELH 139 (211)
Q Consensus 77 ~L~l~~c~~l~~~~~~~~~~~l~-~L~~L~i~~c~~l~~~~~~~~~----------------~~~~~~~~~~~L~~L~l~ 139 (211)
+|+++++.--...+. ....++ +|++|+++++. +.......-. .....-..+++|+.|++.
T Consensus 153 ~L~L~~N~l~~~~p~--~l~~l~~~L~~L~L~~N~-l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 153 GITFDGNRISGAIPD--SYGSFSKLFTSMTISRNR-LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229 (313)
T ss_dssp EEECCSSCCEEECCG--GGGCCCTTCCEEECCSSE-EEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred eEECcCCcccCcCCH--HHhhhhhcCcEEECcCCe-eeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence 888888653222222 345565 78888877654 2211010000 000011235677777777
Q ss_pred ccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCCCc
Q 045852 140 RLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIEKL 194 (211)
Q Consensus 140 ~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~~l 194 (211)
++. ++..... ...+++|++|+++++.--..+|..+..+++|++|++.++.-.
T Consensus 230 ~N~-l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 230 KNS-LAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp SSE-ECCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred CCc-eeeecCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 653 2222221 334688888888888544467777777788999988887543
No 38
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.20 E-value=2.1e-10 Score=102.14 Aligned_cols=62 Identities=13% Similarity=-0.004 Sum_probs=44.4
Q ss_pred CCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCCC
Q 045852 130 FPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIEK 193 (211)
Q Consensus 130 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~~ 193 (211)
+++|+.|++.++.--..++. ....+++|+.|++++|.-...+|..+..+++|+.|++.+|+-
T Consensus 489 l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPK--WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred CCCCCEEEccCCccCCcCCh--HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 67788888887743223332 234578888888888866667887777788899998887753
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.20 E-value=3.2e-10 Score=95.31 Aligned_cols=60 Identities=18% Similarity=0.104 Sum_probs=30.8
Q ss_pred CCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCCC-cCCCCccEEEeccCC
Q 045852 130 FPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGV-FSAPRLKEVCLNDIE 192 (211)
Q Consensus 130 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~-~~~~~L~~l~i~~c~ 192 (211)
+++|+.|.+.++ .++.+... ....+++|+.|+++++ +++.++... ..+++|+.|++.+++
T Consensus 271 l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 271 LLRLQEIQLVGG-QLAVVEPY-AFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CTTCCEEECCSS-CCSEECTT-TBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred cccCCEEECCCC-ccceECHH-HhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 445555555544 23333221 2234566777777666 444444432 345667777776543
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.19 E-value=2.2e-10 Score=91.94 Aligned_cols=183 Identities=19% Similarity=0.179 Sum_probs=90.2
Q ss_pred CCccEEEeccccccceecccccCcccccCccEEEEEccC-----CchhhhcCCccEEecccCccccccCCCC--------
Q 045852 3 PNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQN-----SKLNTVFQNLETLSAHFCLNLTNLMPSS-------- 69 (211)
Q Consensus 3 ~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~-----~~~~~~l~~L~~L~l~~c~~l~~l~~~~-------- 69 (211)
++|+.|+++++ +++.+.... ...+++|++|++.... ......+++|++|+++++ .++.++...
T Consensus 52 ~~l~~L~L~~n-~i~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNN-KITEIKDGD--FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMPKTLQELR 127 (330)
T ss_dssp TTCCEEECCSS-CCCCBCTTT--TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCCTTCCEEE
T ss_pred CCCeEEECCCC-cCCEeChhh--hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhcccccEEE
Confidence 46777777777 566554321 2346677777764321 223455667777777664 344433222
Q ss_pred --------------CCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecC----------CCcEEeccccCCC--
Q 045852 70 --------------ASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECS----------KITELVVASEGDA-- 123 (211)
Q Consensus 70 --------------~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~----------~l~~~~~~~~~~~-- 123 (211)
..+++|+.|+++++.--..-........+++|++|+++++. +++.+.+......
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~ 207 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV 207 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEE
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCcc
Confidence 23344444444443221100011123445555555555442 1111111100000
Q ss_pred -CCCccCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 124 -ANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 124 -~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
...-..+++|+.|+++++ .++.+... ....+++|++|+++++ +++.+|.++..+++|++|++.++.
T Consensus 208 ~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 208 DAASLKGLNNLAKLGLSFN-SISAVDNG-SLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp CTGGGTTCTTCCEEECCSS-CCCEECTT-TGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred CHHHhcCCCCCCEEECCCC-cCceeChh-hccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc
Confidence 000112455666666554 23333221 2335678888888887 566777777777888888887764
No 41
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.19 E-value=1.2e-10 Score=86.74 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=15.5
Q ss_pred CCCcceeeeccCCCCeeccCCCcCCCCccEEEeccC
Q 045852 156 FPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDI 191 (211)
Q Consensus 156 ~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c 191 (211)
+++|++|++++|+.++.++ ....+++|+.|++.+|
T Consensus 135 l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 135 LPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp CSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB
T ss_pred CCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC
Confidence 3444444444444344443 2333444444444444
No 42
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.18 E-value=1.7e-10 Score=92.03 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=60.9
Q ss_pred ccccCccEEEEEccCC---chhhhcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcE
Q 045852 27 HLLNKLEHLWLWEQNS---KLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVH 103 (211)
Q Consensus 27 ~~~~~Lk~L~l~~~~~---~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 103 (211)
..+++|++|++..... .....+++|++|+++++ .++.+.+ ...+++|++|+++++. ++.+. ....+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~---~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS---AIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG---GGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch---hhcCCCCCCE
Confidence 3588999999854322 24567899999999987 5666655 7889999999999986 55553 4678999999
Q ss_pred EEEeecC
Q 045852 104 VSVSECS 110 (211)
Q Consensus 104 L~i~~c~ 110 (211)
|+++++.
T Consensus 112 L~l~~n~ 118 (308)
T 1h6u_A 112 LDLTSTQ 118 (308)
T ss_dssp EECTTSC
T ss_pred EECCCCC
Confidence 9998875
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.18 E-value=2.5e-10 Score=98.84 Aligned_cols=78 Identities=18% Similarity=0.059 Sum_probs=51.5
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEc-----cCCchhhhcCCccEEecccCccccccCC-CCCCCCCc
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWE-----QNSKLNTVFQNLETLSAHFCLNLTNLMP-SSASFRCL 75 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~-----~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L 75 (211)
+++|+.|+++++ .++.+.... ...+++|++|++.. .+......+++|++|+++++ .+..+.+ .+..+++|
T Consensus 98 l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 173 (597)
T 3oja_B 98 AHTIQKLYMGFN-AIRYLPPHV--FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSL 173 (597)
T ss_dssp CTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTC
T ss_pred CCCCCEEECCCC-cCCCCCHHH--HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcC
Confidence 578889999888 666654321 24577888888743 23333466788888888776 4444443 45567777
Q ss_pred cEEeeccC
Q 045852 76 TKLRVWAC 83 (211)
Q Consensus 76 ~~L~l~~c 83 (211)
+.|+++++
T Consensus 174 ~~L~L~~N 181 (597)
T 3oja_B 174 QNLQLSSN 181 (597)
T ss_dssp CEEECTTS
T ss_pred cEEECcCC
Confidence 77777765
No 44
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.18 E-value=1.8e-10 Score=91.16 Aligned_cols=164 Identities=17% Similarity=0.162 Sum_probs=116.1
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccCCc---hhhhcCCccEEecccCccccccCCCCCCCCCccEE
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNSK---LNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKL 78 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~~---~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L 78 (211)
+++|+.|+++++ +++.+. ....+++|++|++...... ....+++|++|.++++ .++.+ +.+..+++|++|
T Consensus 45 l~~L~~L~l~~~-~i~~~~----~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L 117 (291)
T 1h6t_A 45 LNSIDQIIANNS-DIKSVQ----GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN-KVKDL-SSLKDLKKLKSL 117 (291)
T ss_dssp HHTCCEEECTTS-CCCCCT----TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCG-GGGTTCTTCCEE
T ss_pred cCcccEEEccCC-CcccCh----hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCC-cCCCC-hhhccCCCCCEE
Confidence 457889999888 666653 1346889999998543321 2567889999999876 45554 347778999999
Q ss_pred eeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccCCC
Q 045852 79 RVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPS 158 (211)
Q Consensus 79 ~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 158 (211)
+++++. ++.+. ....+++|+.|+++++. +..+ . ....+++|+.|+++++ .++++.. ...+++
T Consensus 118 ~L~~n~-i~~~~---~l~~l~~L~~L~l~~n~-l~~~-~--------~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~ 179 (291)
T 1h6t_A 118 SLEHNG-ISDIN---GLVHLPQLESLYLGNNK-ITDI-T--------VLSRLTKLDTLSLEDN-QISDIVP---LAGLTK 179 (291)
T ss_dssp ECTTSC-CCCCG---GGGGCTTCCEEECCSSC-CCCC-G--------GGGGCTTCSEEECCSS-CCCCCGG---GTTCTT
T ss_pred ECCCCc-CCCCh---hhcCCCCCCEEEccCCc-CCcc-h--------hhccCCCCCEEEccCC-ccccchh---hcCCCc
Confidence 999874 44443 45688999999998874 3333 0 1233788999999877 4555433 446789
Q ss_pred cceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 159 LCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 159 L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
|++|+++++ .++.++. ...+++|+.|++.+++
T Consensus 180 L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 180 LQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred cCEEECCCC-cCCCChh-hccCCCCCEEECcCCc
Confidence 999999988 5666654 5567889999988764
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.16 E-value=9.5e-11 Score=94.95 Aligned_cols=174 Identities=19% Similarity=0.156 Sum_probs=81.2
Q ss_pred CCccEEEeccccccceecccccCcccccCccEEEEEcc-----CCchhhhcCCccEEecccCccccccCCC-CCCCCCcc
Q 045852 3 PNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQ-----NSKLNTVFQNLETLSAHFCLNLTNLMPS-SASFRCLT 76 (211)
Q Consensus 3 ~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~-----~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~ 76 (211)
++|++|+++++ +++.+.... ...+++|++|++... +......+++|++|+++++ +++.+.+. ...+++|+
T Consensus 52 ~~L~~L~l~~n-~i~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNN-RITYISNSD--LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TTCCEEECTTS-CCCEECTTT--TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCS
T ss_pred ccCcEEECCCC-cCcccCHHH--hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCC
Confidence 45667777666 555554311 134566666665322 1223345566666666654 34444332 34566666
Q ss_pred EEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccC
Q 045852 77 KLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKF 156 (211)
Q Consensus 77 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 156 (211)
+|+++++. ++.++.......+++|++|+++++..+..+ ... .-..+++|+.|++.++. ++.+... ....+
T Consensus 128 ~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~------~~~~l~~L~~L~l~~n~-l~~~~~~-~l~~l 197 (353)
T 2z80_A 128 FLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKI-QRK------DFAGLTFLEELEIDASD-LQSYEPK-SLKSI 197 (353)
T ss_dssp EEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEE-CTT------TTTTCCEEEEEEEEETT-CCEECTT-TTTTC
T ss_pred EEECCCCC-CcccCchhhhccCCCCcEEECCCCcccccc-CHH------HccCCCCCCEEECCCCC-cCccCHH-HHhcc
Confidence 66666642 333321112345666666666666545444 110 01124555555555442 2222111 12234
Q ss_pred CCcceeeeccCCCCeeccCCCc-CCCCccEEEeccC
Q 045852 157 PSLCDLSVSACPKMKIFCGGVF-SAPRLKEVCLNDI 191 (211)
Q Consensus 157 ~~L~~L~i~~c~~l~~l~~~~~-~~~~L~~l~i~~c 191 (211)
++|++|++.++. ++.++.... .+++|+.|++.++
T Consensus 198 ~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 198 QNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp SEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESC
T ss_pred ccCCeecCCCCc-cccchhhhhhhcccccEEECCCC
Confidence 455555555543 233332111 1344555555444
No 46
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.16 E-value=4.9e-10 Score=95.67 Aligned_cols=125 Identities=18% Similarity=0.166 Sum_probs=73.0
Q ss_pred hhcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCC
Q 045852 46 TVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAAN 125 (211)
Q Consensus 46 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 125 (211)
..+++|++|+++++ +++.++.....+++|++|+++++. ++.++. ...++|++|+++++. ++.+
T Consensus 384 ~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~----~~~~~L~~L~Ls~N~-l~~~---------- 446 (549)
T 2z81_A 384 LTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTG-IRVVKT----CIPQTLEVLDVSNNN-LDSF---------- 446 (549)
T ss_dssp GGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSC-CSCCCT----TSCTTCSEEECCSSC-CSCC----------
T ss_pred hcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCC-cccccc----hhcCCceEEECCCCC-hhhh----------
Confidence 34455555555544 344443344444555555555543 222221 112455555555542 2222
Q ss_pred CccCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCC-CcCCCCccEEEeccCCC
Q 045852 126 DEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGG-VFSAPRLKEVCLNDIEK 193 (211)
Q Consensus 126 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~l~i~~c~~ 193 (211)
...+++|+.|+++++ .++.++. ...+++|++|+++++ +++.++.+ +..+++|+.|++.+++-
T Consensus 447 -~~~l~~L~~L~Ls~N-~l~~ip~---~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 447 -SLFLPRLQELYISRN-KLKTLPD---ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp -CCCCTTCCEEECCSS-CCSSCCC---GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred -cccCChhcEEECCCC-ccCcCCC---cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCc
Confidence 123788999999887 5666654 235789999999998 55655544 56779999999988763
No 47
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.15 E-value=1.6e-10 Score=97.80 Aligned_cols=173 Identities=17% Similarity=0.079 Sum_probs=110.2
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccCCc---hhhhcCCccEEecccCccccccCCC----------
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNSK---LNTVFQNLETLSAHFCLNLTNLMPS---------- 68 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~~---~~~~l~~L~~L~l~~c~~l~~l~~~---------- 68 (211)
+++|+.|+++++ +++.+.... ...+++|++|++...... ....+++|++|+++++ .++.+++.
T Consensus 33 ~~~L~~L~Ls~n-~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~~l~~~~~L~~L~L~~ 108 (487)
T 3oja_A 33 AWNVKELDLSGN-PLSQISAAD--LAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN-YVQELLVGPSIETLHAAN 108 (487)
T ss_dssp GGGCCEEECCSS-CCCCCCGGG--GTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSS-EEEEEEECTTCCEEECCS
T ss_pred CCCccEEEeeCC-cCCCCCHHH--HhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCC-cCCCCCCCCCcCEEECcC
Confidence 358999999998 777765322 246889999998543221 2567899999999887 34443211
Q ss_pred -------CCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeecccc
Q 045852 69 -------SASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRL 141 (211)
Q Consensus 69 -------~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 141 (211)
...+++|+.|+++++. +....+. ....+++|++|+++++. +..+.+..- ...+++|+.|+++++
T Consensus 109 N~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~l------~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 109 NNISRVSCSRGQGKKNIYLANNK-ITMLRDL-DEGCRSRVQYLDLKLNE-IDTVNFAEL------AASSDTLEHLNLQYN 179 (487)
T ss_dssp SCCCCEEECCCSSCEEEECCSSC-CCSGGGB-CGGGGSSEEEEECTTSC-CCEEEGGGG------GGGTTTCCEEECTTS
T ss_pred CcCCCCCccccCCCCEEECCCCC-CCCCCch-hhcCCCCCCEEECCCCC-CCCcChHHH------hhhCCcccEEecCCC
Confidence 1124566666666553 2222211 23567777777777654 444311100 113678888888877
Q ss_pred ccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 142 QSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 142 ~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
. ++.++. ...+++|++|+++++ +++.+|..+..+++|+.|++.++.
T Consensus 180 ~-l~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 180 F-IYDVKG---QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp C-CCEEEC---CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC
T ss_pred c-cccccc---cccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCc
Confidence 3 555533 224788999999988 567777767778999999998864
No 48
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.14 E-value=1.8e-10 Score=98.61 Aligned_cols=135 Identities=13% Similarity=0.033 Sum_probs=85.9
Q ss_pred hhcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCC
Q 045852 46 TVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAAN 125 (211)
Q Consensus 46 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 125 (211)
..+++|++|+++++. +..+++....+++|++|+++++.- ....+......+++|++|++++|. +... .. .
T Consensus 370 ~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~------~ 439 (570)
T 2z63_A 370 FGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTH-TRVA-FN------G 439 (570)
T ss_dssp HTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEE-ESCTTSCTTTTCTTCCEEECTTSC-CEEC-CT------T
T ss_pred cccCccCEEECCCCc-cccccccccccCCCCEEEccCCcc-ccccchhhhhcCCCCCEEeCcCCc-cccc-ch------h
Confidence 455666666666653 333433455677777787777642 222222234677888888888774 3332 11 0
Q ss_pred CccCCCccceeecccccccc-ccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 126 DEIIFPKLGYLELHRLQSLT-TFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 126 ~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
.-..+++|+.|++.++.--. .++. ....+++|++|++++|.--...|..+..+++|++|++.+|.
T Consensus 440 ~~~~l~~L~~L~l~~n~l~~~~~p~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 440 IFNGLSSLEVLKMAGNSFQENFLPD--IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECS--CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred hhhcCCcCcEEECcCCcCccccchh--hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 11237889999999885321 2332 34567999999999995444447677778999999999884
No 49
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.14 E-value=6e-10 Score=88.08 Aligned_cols=169 Identities=20% Similarity=0.151 Sum_probs=122.6
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccC-----CchhhhcCCccEEecccCccccccCCCCCCCCCcc
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQN-----SKLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLT 76 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~-----~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~ 76 (211)
+++++.++++++ +++.+..+ .++++++|++.... ......+++|++|.++++ .++.+... ..+++|+
T Consensus 9 l~~l~~l~~~~~-~l~~ip~~-----~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 9 VASHLEVNCDKR-NLTALPPD-----LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLG 80 (290)
T ss_dssp STTCCEEECTTS-CCSSCCSC-----CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCC
T ss_pred cCCccEEECCCC-CCCcCCCC-----CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCC
Confidence 578899999887 77766533 25789999975432 234567899999999886 56666443 7899999
Q ss_pred EEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccC
Q 045852 77 KLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKF 156 (211)
Q Consensus 77 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 156 (211)
.|+++++. ++.++. ....+++|++|+++++. ++.+ ... .-..+++|+.|++.++ .++.++.+ ....+
T Consensus 81 ~L~Ls~N~-l~~l~~--~~~~l~~L~~L~l~~N~-l~~l-~~~------~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l 147 (290)
T 1p9a_G 81 TLDLSHNQ-LQSLPL--LGQTLPALTVLDVSFNR-LTSL-PLG------ALRGLGELQELYLKGN-ELKTLPPG-LLTPT 147 (290)
T ss_dssp EEECCSSC-CSSCCC--CTTTCTTCCEEECCSSC-CCCC-CSS------TTTTCTTCCEEECTTS-CCCCCCTT-TTTTC
T ss_pred EEECCCCc-CCcCch--hhccCCCCCEEECCCCc-Cccc-CHH------HHcCCCCCCEEECCCC-CCCccChh-hcccc
Confidence 99999864 455543 45789999999999874 4444 110 1123788999999886 56666543 23357
Q ss_pred CCcceeeeccCCCCeeccCCC-cCCCCccEEEeccCC
Q 045852 157 PSLCDLSVSACPKMKIFCGGV-FSAPRLKEVCLNDIE 192 (211)
Q Consensus 157 ~~L~~L~i~~c~~l~~l~~~~-~~~~~L~~l~i~~c~ 192 (211)
++|+.|+++++ +++.+|.+. ..+++|++|++.++.
T Consensus 148 ~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 148 PKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp TTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCc
Confidence 89999999998 577788765 457999999998865
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.14 E-value=4.1e-10 Score=89.93 Aligned_cols=179 Identities=14% Similarity=0.014 Sum_probs=109.1
Q ss_pred CCccEEEeccccccceecccccCcccccCccEEEEEc-c-----CCchhhhcCCccEEecccCccccccCCCCCCCCCcc
Q 045852 3 PNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWE-Q-----NSKLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLT 76 (211)
Q Consensus 3 ~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~-~-----~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~ 76 (211)
.+++.|+++++ +++....-+.....+++|++|++.. . .......+++|++|+++++.--..++..+..+++|+
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 57889999988 6664111112335689999999973 1 223457899999999988743334555677899999
Q ss_pred EEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCC-ccceeeccccc-------------
Q 045852 77 KLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFP-KLGYLELHRLQ------------- 142 (211)
Q Consensus 77 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~c~------------- 142 (211)
+|+++++.--...+. ....+++|++|+++++. +.......- ..++ +|+.|++.++.
T Consensus 129 ~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~-l~~~~p~~l-------~~l~~~L~~L~L~~N~l~~~~~~~~~~l~ 198 (313)
T 1ogq_A 129 TLDFSYNALSGTLPP--SISSLPNLVGITFDGNR-ISGAIPDSY-------GSFSKLFTSMTISRNRLTGKIPPTFANLN 198 (313)
T ss_dssp EEECCSSEEESCCCG--GGGGCTTCCEEECCSSC-CEEECCGGG-------GCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred EEeCCCCccCCcCCh--HHhcCCCCCeEECcCCc-ccCcCCHHH-------hhhhhcCcEEECcCCeeeccCChHHhCCc
Confidence 999999754323332 45789999999999875 442212111 1122 44444444331
Q ss_pred ---------cccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCCCc
Q 045852 143 ---------SLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIEKL 194 (211)
Q Consensus 143 ---------~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~~l 194 (211)
.++.... .....+++|+.|+++++.--..++. ...+++|++|++.++.--
T Consensus 199 L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDAS-VLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp CSEEECCSSEEEECCG-GGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCE
T ss_pred ccEEECcCCcccCcCC-HHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCccc
Confidence 1221111 1123467777777777743223333 455688888888887644
No 51
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.13 E-value=3.3e-10 Score=98.86 Aligned_cols=159 Identities=14% Similarity=0.060 Sum_probs=93.6
Q ss_pred ccccCccEEEEEccCCc----------------------hhh--hcCCccEEecccCccccccCCCCCCCCCccEEeecc
Q 045852 27 HLLNKLEHLWLWEQNSK----------------------LNT--VFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWA 82 (211)
Q Consensus 27 ~~~~~Lk~L~l~~~~~~----------------------~~~--~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 82 (211)
+.+++|++|++...... ... .+++|++|.+++|.-...++..+..+++|++|++++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 46788999988542221 123 788999999998876666767778889999999998
Q ss_pred Cccchh--ccchHHHhcc------CCCcEEEEeecCCCcEEecc--ccCC--------------C-CCC-ccCCCcccee
Q 045852 83 CEHLIN--LVASSAAKNL------VQLVHVSVSECSKITELVVA--SEGD--------------A-AND-EIIFPKLGYL 136 (211)
Q Consensus 83 c~~l~~--~~~~~~~~~l------~~L~~L~i~~c~~l~~~~~~--~~~~--------------~-~~~-~~~~~~L~~L 136 (211)
+..++. ++. .++.+ ++|++|+++++. +..+ .. .-+. . ..+ -..+++|+.|
T Consensus 283 n~~l~~~~lp~--~~~~L~~~~~l~~L~~L~L~~n~-l~~i-p~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L 358 (636)
T 4eco_A 283 NRGISGEQLKD--DWQALADAPVGEKIQIIYIGYNN-LKTF-PVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASL 358 (636)
T ss_dssp CTTSCHHHHHH--HHHHHHHSGGGGTCCEEECCSSC-CSSC-CCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEE
T ss_pred CCCCccccchH--HHHhhhccccCCCCCEEECCCCc-CCcc-CchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEE
Confidence 874553 221 23343 888888887764 3333 21 0000 0 000 0113445555
Q ss_pred eccccccccccccCcccccCCC-cceeeeccCCCCeeccCCCcCC--CCccEEEeccCCC
Q 045852 137 ELHRLQSLTTFCSANYTFKFPS-LCDLSVSACPKMKIFCGGVFSA--PRLKEVCLNDIEK 193 (211)
Q Consensus 137 ~l~~c~~l~~~~~~~~~~~~~~-L~~L~i~~c~~l~~l~~~~~~~--~~L~~l~i~~c~~ 193 (211)
+++++ .++.++.. ...+++ |++|+++++. ++.+|...... ++|+.|++.++.-
T Consensus 359 ~L~~N-~l~~lp~~--l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 359 NLAYN-QITEIPAN--FCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp ECCSS-EEEECCTT--SEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred ECCCC-ccccccHh--hhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcC
Confidence 55544 23333322 334566 7777777774 44667654433 3788888777653
No 52
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.12 E-value=1.3e-09 Score=84.22 Aligned_cols=168 Identities=17% Similarity=0.125 Sum_probs=115.6
Q ss_pred ccEEEeccccccceecccccCcccccCccEEEEEcc-----CCchhhhcCCccEEecccCccccccCCC-CCCCCCccEE
Q 045852 5 LEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQ-----NSKLNTVFQNLETLSAHFCLNLTNLMPS-SASFRCLTKL 78 (211)
Q Consensus 5 Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~-----~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L 78 (211)
.+.+++++. +++.+..+ ..+++++|++... +......+++|++|+++++ .++.+.+. ...+++|++|
T Consensus 16 ~~~l~~~~~-~l~~~p~~-----~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 16 KKEVDCQGK-SLDSVPSG-----IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GTEEECTTC-CCSSCCSC-----CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred CeEEecCCC-CccccCCC-----CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEE
Confidence 456666665 55555432 2468999987442 2334577899999999886 56665543 5678999999
Q ss_pred eeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccCCC
Q 045852 79 RVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPS 158 (211)
Q Consensus 79 ~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 158 (211)
+++++. ++.+++ .....+++|++|+++++. ++.+ ... .-..+++|+.|++++. .++.++.+ ....+++
T Consensus 89 ~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~-~~~------~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~ 156 (251)
T 3m19_A 89 GLANNQ-LASLPL-GVFDHLTQLDKLYLGGNQ-LKSL-PSG------VFDRLTKLKELRLNTN-QLQSIPAG-AFDKLTN 156 (251)
T ss_dssp ECTTSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCC-CTT------TTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTT
T ss_pred ECCCCc-ccccCh-hHhcccCCCCEEEcCCCc-CCCc-Chh------HhccCCcccEEECcCC-cCCccCHH-HcCcCcC
Confidence 999865 444432 244689999999999874 5544 210 0123788999999887 56666543 2345789
Q ss_pred cceeeeccCCCCeeccC-CCcCCCCccEEEeccCC
Q 045852 159 LCDLSVSACPKMKIFCG-GVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 159 L~~L~i~~c~~l~~l~~-~~~~~~~L~~l~i~~c~ 192 (211)
|++|+++++ +++.++. .+..+++|+.|++.+++
T Consensus 157 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 157 LQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 999999998 4555554 45567999999998754
No 53
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.12 E-value=6.3e-10 Score=93.46 Aligned_cols=172 Identities=20% Similarity=0.216 Sum_probs=82.1
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccCC---chhhhcCCccEEecccCccccccCCCCCCCCCccEE
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNS---KLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKL 78 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~---~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L 78 (211)
+++|+.|+++++ .++.+.. ...+++|++|++..... .....+++|++|+++++. +..+.+ ...+++|+.|
T Consensus 198 l~~L~~L~l~~n-~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L 270 (466)
T 1o6v_A 198 LTNLESLIATNN-QISDITP----LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTEL 270 (466)
T ss_dssp CTTCSEEECCSS-CCCCCGG----GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEE
T ss_pred CCCCCEEEecCC-ccccccc----ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc-cccchh-hhcCCCCCEE
Confidence 567888888877 4544432 23466666666643221 123455666666665552 332222 3445555555
Q ss_pred eeccCccchhccchHHHhccCCCcEEEEeecCCCcEEecc-------------ccC-CCCCCccCCCccceeeccccccc
Q 045852 79 RVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVA-------------SEG-DAANDEIIFPKLGYLELHRLQSL 144 (211)
Q Consensus 79 ~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~-------------~~~-~~~~~~~~~~~L~~L~l~~c~~l 144 (211)
+++++. +....+ ...+++|+.|+++++. +..+ .. ... ....+...+++|+.|++.++ .+
T Consensus 271 ~l~~n~-l~~~~~---~~~l~~L~~L~L~~n~-l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n-~l 343 (466)
T 1o6v_A 271 KLGANQ-ISNISP---LAGLTALTNLELNENQ-LEDI-SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN-KV 343 (466)
T ss_dssp ECCSSC-CCCCGG---GTTCTTCSEEECCSSC-CSCC-GGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS-CC
T ss_pred ECCCCc-cCcccc---ccCCCccCeEEcCCCc-ccCc-hhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC-cc
Confidence 555542 222221 2344445555444432 1111 00 000 00001123566666666665 33
Q ss_pred cccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 145 TTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 145 ~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
+++. ....+++|+.|++++|+--...| ...+++|+.|.+.+|+
T Consensus 344 ~~~~---~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 344 SDVS---SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp CCCG---GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred CCch---hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 4332 13345677777777764322222 4455777777776654
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.12 E-value=1.5e-09 Score=87.05 Aligned_cols=179 Identities=18% Similarity=0.180 Sum_probs=93.4
Q ss_pred CCccEEEeccccccceecccccCcccccCccEEEEEccC-----CchhhhcCCccEEecccCccccccCCCCCCCCCccE
Q 045852 3 PNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQN-----SKLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTK 77 (211)
Q Consensus 3 ~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~-----~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~ 77 (211)
++|+.|+++++ +++.+... ....+++|++|++.... ......+++|++|+++++ .++.++.... ++|++
T Consensus 54 ~~l~~L~l~~n-~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNN-DISELRKD--DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVE 127 (332)
T ss_dssp TTCCEEECCSS-CCCEECTT--TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCE
T ss_pred CCCeEEECCCC-cCCccCHh--HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCE
Confidence 45667777766 55555321 12356777777764322 223456677777777665 3444443332 67777
Q ss_pred EeeccCccchhccchHHHhccCCCcEEEEeecCCC--------------cEEeccccCCCCCC-----------------
Q 045852 78 LRVWACEHLINLVASSAAKNLVQLVHVSVSECSKI--------------TELVVASEGDAAND----------------- 126 (211)
Q Consensus 78 L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l--------------~~~~~~~~~~~~~~----------------- 126 (211)
|+++++. ++.+++ .....+++|++|+++++.-- +.+.+........+
T Consensus 128 L~l~~n~-i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 128 LRIHDNR-IRKVPK-GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKI 205 (332)
T ss_dssp EECCSSC-CCCCCS-GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCC
T ss_pred EECCCCc-cCccCH-hHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcC
Confidence 7776653 333321 13456777777777665310 00000000000000
Q ss_pred -------ccCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 127 -------EIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 127 -------~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
-..+++|+.|++.++ .++.+... ....+++|++|+++++ +++.+|.++..+++|++|++.++.
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHN-QIRMIENG-SLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSS-CCCCCCTT-GGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC
T ss_pred CccCHHHhcCCCCCCEEECCCC-cCCcCChh-HhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCC
Confidence 011334444444443 22322221 2335677888888877 566777777777888888887754
No 55
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.11 E-value=1.1e-09 Score=91.26 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=21.0
Q ss_pred cCCCcceeeeccCCCCeeccCCC-cCCCCccEEEeccC
Q 045852 155 KFPSLCDLSVSACPKMKIFCGGV-FSAPRLKEVCLNDI 191 (211)
Q Consensus 155 ~~~~L~~L~i~~c~~l~~l~~~~-~~~~~L~~l~i~~c 191 (211)
.+++|++|+++++ +++.+|.+. ..+++|++|++.++
T Consensus 369 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 369 GLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccccccEEECCCC-ccccCCHhHhccCCcccEEEccCC
Confidence 4566666666665 344455432 34567777777653
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.11 E-value=2.3e-09 Score=85.93 Aligned_cols=178 Identities=19% Similarity=0.161 Sum_probs=97.8
Q ss_pred CccEEEeccccccceecccccCcccccCccEEEEEc-----cCCchhhhcCCccEEecccCcccccc-CCCCCCCCCccE
Q 045852 4 NLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWE-----QNSKLNTVFQNLETLSAHFCLNLTNL-MPSSASFRCLTK 77 (211)
Q Consensus 4 ~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~-----~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~ 77 (211)
+++.++++++ +++.+.. ...+++++|++.. .+......+++|++|+++++ .++.+ +.....+++|++
T Consensus 32 ~l~~l~~~~~-~l~~lp~-----~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPK-----DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLER 104 (330)
T ss_dssp ETTEEECTTS-CCCSCCC-----SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCE
T ss_pred CCeEEEecCC-CccccCc-----cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCE
Confidence 5677777766 5655442 2357899999754 23334578899999999887 45555 345678899999
Q ss_pred EeeccCccchhccc--------------------hHHHhccCCCcEEEEeecCC---------------CcEEeccccCC
Q 045852 78 LRVWACEHLINLVA--------------------SSAAKNLVQLVHVSVSECSK---------------ITELVVASEGD 122 (211)
Q Consensus 78 L~l~~c~~l~~~~~--------------------~~~~~~l~~L~~L~i~~c~~---------------l~~~~~~~~~~ 122 (211)
|+++++. ++.++. ......+++|++|+++++.- ++.+.+.....
T Consensus 105 L~Ls~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 105 LYLSKNQ-LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp EECCSSC-CSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred EECCCCc-CCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 9998764 333321 11234556666666554431 11110000000
Q ss_pred CCCCccCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccC-CCcCCCCccEEEeccCC
Q 045852 123 AANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCG-GVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 123 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~l~i~~c~ 192 (211)
...+...+++|+.|++.++. ++.+... ....+++|++|+++++. ++.++. .+..+++|++|++.++.
T Consensus 184 ~~l~~~~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 184 TTIPQGLPPSLTELHLDGNK-ITKVDAA-SLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp CSCCSSCCTTCSEEECTTSC-CCEECTG-GGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSC
T ss_pred ccCCccccccCCEEECCCCc-CCccCHH-HhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCc
Confidence 00011112445555554442 3332211 23345777777777774 343333 44556778888887774
No 57
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.11 E-value=4.4e-10 Score=97.49 Aligned_cols=164 Identities=18% Similarity=0.174 Sum_probs=116.0
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccCC---chhhhcCCccEEecccCccccccCCCCCCCCCccEE
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNS---KLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKL 78 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~---~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L 78 (211)
|++|+.|+++++ +++.+. ....+++|+.|++..... .....+++|+.|.++++ .+..+ +.+..+++|+.|
T Consensus 42 L~~L~~L~l~~n-~i~~l~----~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L 114 (605)
T 1m9s_A 42 LNSIDQIIANNS-DIKSVQ----GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDEN-KIKDL-SSLKDLKKLKSL 114 (605)
T ss_dssp HTTCCCCBCTTC-CCCCCT----TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSS-CCCCC-TTSTTCTTCCEE
T ss_pred CCCCCEEECcCC-CCCCCh----HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCC-CCCCC-hhhccCCCCCEE
Confidence 467888888887 566553 235688999999854322 22577899999999887 45554 467788999999
Q ss_pred eeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccCCC
Q 045852 79 RVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPS 158 (211)
Q Consensus 79 ~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 158 (211)
+++++. +..+. ....+++|+.|++++|. +..+ . ....+++|+.|.++++ .+..+.. ...+++
T Consensus 115 ~Ls~N~-l~~l~---~l~~l~~L~~L~Ls~N~-l~~l-~--------~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~ 176 (605)
T 1m9s_A 115 SLEHNG-ISDIN---GLVHLPQLESLYLGNNK-ITDI-T--------VLSRLTKLDTLSLEDN-QISDIVP---LAGLTK 176 (605)
T ss_dssp ECTTSC-CCCCG---GGGGCTTCSEEECCSSC-CCCC-G--------GGGSCTTCSEEECCSS-CCCCCGG---GTTCTT
T ss_pred EecCCC-CCCCc---cccCCCccCEEECCCCc-cCCc-h--------hhcccCCCCEEECcCC-cCCCchh---hccCCC
Confidence 999875 44443 46789999999998874 3332 0 1233788999999877 3444432 446788
Q ss_pred cceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 159 LCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 159 L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
|+.|++++| .+..++. +..+++|+.|++.+|+
T Consensus 177 L~~L~Ls~N-~i~~l~~-l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 177 LQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCEEECCSS-CCCBCGG-GTTCTTCSEEECCSEE
T ss_pred CCEEECcCC-CCCCChH-HccCCCCCEEEccCCc
Confidence 999999988 5565643 5567889999988765
No 58
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.10 E-value=1.1e-09 Score=92.06 Aligned_cols=175 Identities=19% Similarity=0.185 Sum_probs=109.2
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccCCc---hhhhcCCccEEecccCccccccCCCCCCCCCccEE
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNSK---LNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKL 78 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~~---~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L 78 (211)
+++|+.|+++++ .++.+. ....+++|++|++...... ....+++|++|.++++ .++.+ +....+++|+.|
T Consensus 176 l~~L~~L~l~~n-~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L 248 (466)
T 1o6v_A 176 LTTLERLDISSN-KVSDIS----VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN-QLKDI-GTLASLTNLTDL 248 (466)
T ss_dssp CTTCCEEECCSS-CCCCCG----GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEE
T ss_pred CCCCCEEECcCC-cCCCCh----hhccCCCCCEEEecCCcccccccccccCCCCEEECCCC-Ccccc-hhhhcCCCCCEE
Confidence 678999999998 566553 2356899999998653322 2567899999999987 35544 456678999999
Q ss_pred eeccCccchhccchHHHhccCCCcEEEEeecCCCcEE------------eccccCCC-CCCccCCCccceeecccccccc
Q 045852 79 RVWACEHLINLVASSAAKNLVQLVHVSVSECSKITEL------------VVASEGDA-ANDEIIFPKLGYLELHRLQSLT 145 (211)
Q Consensus 79 ~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~------------~~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~ 145 (211)
++++|. +....+ ...+++|++|+++++. +..+ .+...... ......+++|+.|+++++ .++
T Consensus 249 ~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n-~l~ 322 (466)
T 1o6v_A 249 DLANNQ-ISNLAP---LSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NIS 322 (466)
T ss_dssp ECCSSC-CCCCGG---GTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCS
T ss_pred ECCCCc-cccchh---hhcCCCCCEEECCCCc-cCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCC-cCC
Confidence 999985 344432 5789999999998874 3322 11100000 001122455555555555 233
Q ss_pred ccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCCCc
Q 045852 146 TFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIEKL 194 (211)
Q Consensus 146 ~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~~l 194 (211)
++.. ...+++|+.|++.+| +++.++ ....+++|+.|++.+|.-.
T Consensus 323 ~~~~---~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 323 DISP---VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp CCGG---GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCCC
T ss_pred Cchh---hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCccC
Confidence 3221 234567777777776 344443 3345677777777776543
No 59
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.10 E-value=1.1e-09 Score=87.90 Aligned_cols=62 Identities=13% Similarity=0.069 Sum_probs=45.7
Q ss_pred CCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCCCc-------CCCCccEEEeccCCCc
Q 045852 129 IFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVF-------SAPRLKEVCLNDIEKL 194 (211)
Q Consensus 129 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~-------~~~~L~~l~i~~c~~l 194 (211)
.+++|+.|++.++ .++.++.. ...+++|++|+++++ +++.++.... ..++|+.+++.+++-.
T Consensus 239 ~l~~L~~L~L~~N-~l~~lp~~--l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 239 FLPTLRELHLDNN-KLSRVPAG--LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp GCTTCCEEECCSS-CCCBCCTT--GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCCCCCEEECCCC-cCeecChh--hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCccc
Confidence 3788999999887 56666543 456799999999998 4666654321 1467999999998855
No 60
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.09 E-value=9.4e-10 Score=92.40 Aligned_cols=169 Identities=18% Similarity=0.071 Sum_probs=89.8
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccCCc--hhhhcCCccEEecccCccccccCCCCCCCCCccEEe
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNSK--LNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLR 79 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~~--~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~ 79 (211)
+++|+.|+++++ +++.+. ....+++|++|++...... ....+++|++|+++++ .++.+ .+..+++|++|+
T Consensus 41 l~~L~~L~Ls~n-~l~~~~----~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N-~l~~~--~~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNS-SITDMT----GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSN-KLTNL--DVTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSS-CCCCCT----TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSS-CCSCC--CCTTCTTCCEEE
T ss_pred cCCCCEEEccCC-CcccCh----hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCC-CCcee--ecCCCCcCCEEE
Confidence 467888888887 666552 2345778888877432221 2456777888887765 35544 255677777777
Q ss_pred eccCccchhccchHHHhccCCCcEEEEeecCCCcEE-----------eccccC-CCCCCccCCCccceeecccccccccc
Q 045852 80 VWACEHLINLVASSAAKNLVQLVHVSVSECSKITEL-----------VVASEG-DAANDEIIFPKLGYLELHRLQSLTTF 147 (211)
Q Consensus 80 l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~-----------~~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~~ 147 (211)
++++. ++.++ ...+++|++|+++++. ++.+ .+.... ........+++|+.|+++++ .++.+
T Consensus 113 L~~N~-l~~l~----~~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~l 185 (457)
T 3bz5_A 113 CDTNK-LTKLD----VSQNPLLTYLNCARNT-LTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KITEL 185 (457)
T ss_dssp CCSSC-CSCCC----CTTCTTCCEEECTTSC-CSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS-CCCCC
T ss_pred CCCCc-CCeec----CCCCCcCCEEECCCCc-cceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCC-cccee
Confidence 77763 33332 3566677777666543 2222 000000 00001112445555555544 23333
Q ss_pred ccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 148 CSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 148 ~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
+ ...+++|+.|.+.++ +++.++ ...+++|+.|++.++.
T Consensus 186 ~----l~~l~~L~~L~l~~N-~l~~~~--l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 186 D----VSQNKLLNRLNCDTN-NITKLD--LNQNIQLTFLDCSSNK 223 (457)
T ss_dssp C----CTTCTTCCEEECCSS-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred c----cccCCCCCEEECcCC-cCCeec--cccCCCCCEEECcCCc
Confidence 2 223456666666665 333332 3445677777776653
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.09 E-value=2.3e-09 Score=83.67 Aligned_cols=168 Identities=20% Similarity=0.155 Sum_probs=116.3
Q ss_pred ccEEEeccccccceecccccCcccccCccEEEEEcc-----CCchhhhcCCccEEecccCccccccCCCC-CCCCCccEE
Q 045852 5 LEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQ-----NSKLNTVFQNLETLSAHFCLNLTNLMPSS-ASFRCLTKL 78 (211)
Q Consensus 5 Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~-----~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L 78 (211)
.+.+++++. +++.+.. ...+++++|++... +......+++|++|.++++ .++.+++.. ..+++|++|
T Consensus 18 ~~~l~~~~~-~l~~ip~-----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 18 KNSVDCSSK-KLTAIPS-----NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp TTEEECTTS-CCSSCCS-----CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEE
T ss_pred CCEEEccCC-CCCccCC-----CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEE
Confidence 456666665 5665442 22468999998542 3334567899999999886 566666554 578999999
Q ss_pred eeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccCCC
Q 045852 79 RVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPS 158 (211)
Q Consensus 79 ~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 158 (211)
+++++. ++.+++ .....+++|++|+++++. +..+ ... .-..+++|+.|+++++ .++.++.+ ....+++
T Consensus 91 ~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~-~~~------~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~ 158 (270)
T 2o6q_A 91 WVTDNK-LQALPI-GVFDQLVNLAELRLDRNQ-LKSL-PPR------VFDSLTKLTYLSLGYN-ELQSLPKG-VFDKLTS 158 (270)
T ss_dssp ECCSSC-CCCCCT-TTTTTCSSCCEEECCSSC-CCCC-CTT------TTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTT
T ss_pred ECCCCc-CCcCCH-hHcccccCCCEEECCCCc-cCee-CHH------HhCcCcCCCEEECCCC-cCCccCHh-HccCCcc
Confidence 999875 444432 234689999999999864 4443 110 1123789999999887 46665543 2345799
Q ss_pred cceeeeccCCCCeeccCC-CcCCCCccEEEeccCC
Q 045852 159 LCDLSVSACPKMKIFCGG-VFSAPRLKEVCLNDIE 192 (211)
Q Consensus 159 L~~L~i~~c~~l~~l~~~-~~~~~~L~~l~i~~c~ 192 (211)
|++|+++++ +++.++.+ +..+++|++|++.++.
T Consensus 159 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 159 LKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp CCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cceeEecCC-cCcEeChhHhccCCCcCEEECCCCc
Confidence 999999999 56666654 4567999999999874
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.08 E-value=1.2e-09 Score=85.35 Aligned_cols=174 Identities=19% Similarity=0.148 Sum_probs=108.8
Q ss_pred CCccEEEeccccccceecccccCcccccCccEEEEEcc-----CCchhhhcCCccEEecccCccccccC-CCCCCCCCcc
Q 045852 3 PNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQ-----NSKLNTVFQNLETLSAHFCLNLTNLM-PSSASFRCLT 76 (211)
Q Consensus 3 ~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~-----~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~ 76 (211)
++|++|+++++ +++.+... ....+++|++|++... +......+++|++|+++++ .++.+. .....+++|+
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSY--SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp TTCCEEECTTC-CCCEECTT--TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCC
T ss_pred CCccEEECCCC-cccccCHh--HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCcccc
Confidence 35888888887 67766532 2245778888887432 2334566788888888776 355444 3456788888
Q ss_pred EEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccC
Q 045852 77 KLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKF 156 (211)
Q Consensus 77 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 156 (211)
+|+++++. +..+.+. ....+++|++|+++++. +..+.+. ..-..+++|+.|+++++ .++++... ....+
T Consensus 104 ~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~l~------~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l 172 (276)
T 2z62_A 104 KLVAVETN-LASLENF-PIGHLKTLKELNVAHNL-IQSFKLP------EYFSNLTNLEHLDLSSN-KIQSIYCT-DLRVL 172 (276)
T ss_dssp EEECTTSC-CCCSTTC-CCTTCTTCCEEECCSSC-CCCCCCC------GGGGGCTTCCEEECCSS-CCCEECGG-GGHHH
T ss_pred EEECCCCC-ccccCch-hcccCCCCCEEECcCCc-cceecCc------hhhccCCCCCEEECCCC-CCCcCCHH-Hhhhh
Confidence 88888764 3333211 24678888888888764 3222000 01123678889888876 34444322 12233
Q ss_pred CCcc----eeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 157 PSLC----DLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 157 ~~L~----~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
++|+ +++++++ .++.++.+.....+|++|++.++.
T Consensus 173 ~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 173 HQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQ 211 (276)
T ss_dssp HTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSC
T ss_pred hhccccceeeecCCC-cccccCccccCCCcccEEECCCCc
Confidence 4555 7778777 456676666566789999998875
No 63
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.08 E-value=8.8e-10 Score=98.13 Aligned_cols=185 Identities=17% Similarity=0.021 Sum_probs=94.7
Q ss_pred CCCccEEEeccccccc-eecccccCcccccCccEEEEEcc-----CCchhhhcC-CccEEecccCccccccCCCCCC--C
Q 045852 2 LPNLEELRLSKNKDIA-KIWQGPFTDHLLNKLEHLWLWEQ-----NSKLNTVFQ-NLETLSAHFCLNLTNLMPSSAS--F 72 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~-~i~~~~~~~~~~~~Lk~L~l~~~-----~~~~~~~l~-~L~~L~l~~c~~l~~l~~~~~~--l 72 (211)
+++|++|+++++ +++ .+... ....+++|++|++... .......++ +|++|+++++.--..+++.... +
T Consensus 317 l~~L~~L~L~~n-~l~~~ip~~--~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 393 (768)
T 3rgz_A 317 CSLLESLALSSN-NFSGELPMD--TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393 (768)
T ss_dssp CTTCCEEECCSS-EEEEECCHH--HHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred CCCccEEECCCC-cccCcCCHH--HHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhccc
Confidence 567888888887 444 33211 0134667777775321 111223333 5666666555322222222222 4
Q ss_pred CCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEecc--------------cc---CCCCCCccCCCccce
Q 045852 73 RCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVA--------------SE---GDAANDEIIFPKLGY 135 (211)
Q Consensus 73 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~--------------~~---~~~~~~~~~~~~L~~ 135 (211)
++|++|++++|.-....+. ....+++|++|+++++. +...... .. +..+.....+++|+.
T Consensus 394 ~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPP--TLSNCSELVSLHLSFNY-LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp CCCCEEECCSSEEEEECCG--GGGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred CCccEEECCCCccccccCH--HHhcCCCCCEEECcCCc-ccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 4555555555432212211 23344455555444432 1100000 00 000001123677888
Q ss_pred eeccccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCCCc
Q 045852 136 LELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIEKL 194 (211)
Q Consensus 136 L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~~l 194 (211)
|++.++.--..++. ....+++|+.|++++|.-...+|..+..+++|+.|++.+|.-.
T Consensus 471 L~L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 471 LILDFNDLTGEIPS--GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp EECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred EEecCCcccCcCCH--HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence 88877643222222 2446788999999998765577877777899999999888654
No 64
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.07 E-value=2.2e-09 Score=89.48 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=21.1
Q ss_pred cCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 155 KFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 155 ~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
.+++|++|+++++.--...+..+..+++|++|++.++.
T Consensus 297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 334 (455)
T 3v47_A 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334 (455)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc
Confidence 34556666666664333233444455677777776663
No 65
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.07 E-value=2.1e-09 Score=90.24 Aligned_cols=73 Identities=22% Similarity=0.086 Sum_probs=36.9
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccCCc--hhhhcCCccEEecccCccccccCCCCCCCCCccEEe
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNSK--LNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLR 79 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~~--~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~ 79 (211)
+++|++|+++++ +++.+. ...+++|++|++...... ....+++|++|+++++ .++.+ .+..+++|++|+
T Consensus 63 l~~L~~L~Ls~n-~l~~~~-----~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N-~l~~l--~~~~l~~L~~L~ 133 (457)
T 3bz5_A 63 LTGLTKLICTSN-NITTLD-----LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTN-KLTKL--DVSQNPLLTYLN 133 (457)
T ss_dssp CTTCSEEECCSS-CCSCCC-----CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSS-CCSCC--CCTTCTTCCEEE
T ss_pred cCCCCEEEccCC-cCCeEc-----cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCC-cCCee--cCCCCCcCCEEE
Confidence 467777777776 555542 234566666665332111 1344556666666554 33333 134444555555
Q ss_pred eccC
Q 045852 80 VWAC 83 (211)
Q Consensus 80 l~~c 83 (211)
++++
T Consensus 134 l~~N 137 (457)
T 3bz5_A 134 CARN 137 (457)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 5443
No 66
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.07 E-value=3.2e-10 Score=90.28 Aligned_cols=105 Identities=17% Similarity=0.105 Sum_probs=51.2
Q ss_pred CCccEEEeccccccceecccccCcccccCccEEEEEccCCc---------hhhhcCCccEEecccCccccccC-CCCCCC
Q 045852 3 PNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNSK---------LNTVFQNLETLSAHFCLNLTNLM-PSSASF 72 (211)
Q Consensus 3 ~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~~---------~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l 72 (211)
++|++|+++++ +++...........+++|++|++...... ....+++|++|+++++. +..+. .....+
T Consensus 91 ~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l 168 (310)
T 4glp_A 91 SRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAF 168 (310)
T ss_dssp SCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCC
T ss_pred CceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccC
Confidence 45777777777 45443322111134566666666442211 11235666777766653 33333 234456
Q ss_pred CCccEEeeccCccchh--ccchHHHhccCCCcEEEEeec
Q 045852 73 RCLTKLRVWACEHLIN--LVASSAAKNLVQLVHVSVSEC 109 (211)
Q Consensus 73 ~~L~~L~l~~c~~l~~--~~~~~~~~~l~~L~~L~i~~c 109 (211)
++|++|+++++.-... +........+++|++|++++|
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N 207 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT 207 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC
Confidence 6666666666543221 111111234555666665554
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.07 E-value=6.3e-11 Score=101.98 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=29.6
Q ss_pred hcCCccEEecccCccccc-----cCCCCCCCCCccEEeeccCc-cchhccchHHHhccCCCcEEEEeec
Q 045852 47 VFQNLETLSAHFCLNLTN-----LMPSSASFRCLTKLRVWACE-HLINLVASSAAKNLVQLVHVSVSEC 109 (211)
Q Consensus 47 ~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~-~l~~~~~~~~~~~l~~L~~L~i~~c 109 (211)
.+++|++|++++|. +++ +......+++|+.|++++|. .+..........++++|++|++.+|
T Consensus 154 ~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 154 TCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp HCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred hCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 45556666655553 221 11112245566666666664 1211111122345677777777665
No 68
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.06 E-value=4.7e-10 Score=95.75 Aligned_cols=176 Identities=20% Similarity=0.167 Sum_probs=96.5
Q ss_pred CCccEEEeccccccceecccccCcccccCccEEEEEc-----cCCchhhhcCCccEEecccCccccccCCC-CCCCCCcc
Q 045852 3 PNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWE-----QNSKLNTVFQNLETLSAHFCLNLTNLMPS-SASFRCLT 76 (211)
Q Consensus 3 ~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~-----~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~ 76 (211)
++|++|+++++ +++.+.... ...+++|++|++.. .+......+++|++|+++++ .++.+.+. +..+++|+
T Consensus 26 ~~L~~L~Ls~n-~l~~~~~~~--~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 26 AAMKSLDLSFN-KITYIGHGD--LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp TTCCEEECCSS-CCCEECSST--TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCC
T ss_pred CCccEEECcCC-ccCccChhh--hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCc
Confidence 57888888887 566664321 24567888887643 22234456777888888776 34444433 55677788
Q ss_pred EEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccC------
Q 045852 77 KLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSA------ 150 (211)
Q Consensus 77 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~------ 150 (211)
+|+++++. ++.+........+++|++|+++++..+..+ ... .-..+++|+.|++.++. ++.....
T Consensus 102 ~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~------~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~ 172 (549)
T 2z81_A 102 YLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEI-RRI------DFAGLTSLNELEIKALS-LRNYQSQSLKSIR 172 (549)
T ss_dssp EEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEE-CTT------TTTTCCEEEEEEEEETT-CCEECTTTTTTCS
T ss_pred EEECCCCc-ccccchhhhhhccCCccEEECCCCcccccc-CHh------hhhcccccCeeeccCCc-ccccChhhhhccc
Confidence 88877764 332211113456777777777777655554 210 01124555555555432 1111000
Q ss_pred -----------------cccccCCCcceeeeccCCCCeecc---CC-CcCCCCccEEEeccCC
Q 045852 151 -----------------NYTFKFPSLCDLSVSACPKMKIFC---GG-VFSAPRLKEVCLNDIE 192 (211)
Q Consensus 151 -----------------~~~~~~~~L~~L~i~~c~~l~~l~---~~-~~~~~~L~~l~i~~c~ 192 (211)
.....+++|++|+++++. +..++ .. ....++|++|++.++.
T Consensus 173 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp EEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred cCceEecccCcccccchhhHhhcccccEEEccCCc-cccccccccchhhhhhcccceeccccc
Confidence 001135777777777763 33221 11 1235778888887764
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.05 E-value=1.1e-09 Score=87.29 Aligned_cols=172 Identities=20% Similarity=0.101 Sum_probs=118.1
Q ss_pred CCCccEEEeccccccceecccccCccc-----ccCccEEEEEccC-----CchhhhcCCccEEecccCccccc--cCCCC
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHL-----LNKLEHLWLWEQN-----SKLNTVFQNLETLSAHFCLNLTN--LMPSS 69 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~-----~~~Lk~L~l~~~~-----~~~~~~l~~L~~L~l~~c~~l~~--l~~~~ 69 (211)
+++|++|+++++ +++.+.. .... +++|++|++.... ......+++|++|+++++.-... +++..
T Consensus 120 l~~L~~L~Ls~N-~l~~~~~---~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 120 GPDLNILNLRNV-SWATRDA---WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCCSEEEEESC-BCSSSSS---HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred CCCccEEEccCC-CCcchhH---HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 678999999998 6766521 1122 3899999986532 23456789999999998853332 12222
Q ss_pred --CCCCCccEEeeccCccchhcc--chHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeecccccccc
Q 045852 70 --ASFRCLTKLRVWACEHLINLV--ASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLT 145 (211)
Q Consensus 70 --~~l~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 145 (211)
..+++|++|+++++. ++.+. +......+++|++|+++++. +... . . ......+++|+.|+++++ .++
T Consensus 196 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~-~----~-~~~~~~l~~L~~L~Ls~N-~l~ 266 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS-LRDA-A----G-APSCDWPSQLNSLNLSFT-GLK 266 (312)
T ss_dssp CTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSS-C----C-CSCCCCCTTCCEEECTTS-CCS
T ss_pred HhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc-CCcc-c----c-hhhhhhcCCCCEEECCCC-ccC
Confidence 678999999999985 34222 12234578999999999875 3332 1 0 001122689999999987 456
Q ss_pred ccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 146 TFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 146 ~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
.++.. . +++|++|+++++ +++.+|. ...+++|++|++.+.+
T Consensus 267 ~ip~~--~--~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 267 QVPKG--L--PAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCCSS--C--CSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred hhhhh--c--cCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 55442 2 278999999998 6777776 6678999999998764
No 70
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=1.4e-09 Score=97.89 Aligned_cols=139 Identities=14% Similarity=0.032 Sum_probs=68.1
Q ss_pred hcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchh-ccchHHHhc-------cCCCcEEEEeecCCCcEEecc
Q 045852 47 VFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLIN-LVASSAAKN-------LVQLVHVSVSECSKITELVVA 118 (211)
Q Consensus 47 ~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~~~-------l~~L~~L~i~~c~~l~~~~~~ 118 (211)
.+++|++|.+++|.-...++..+..+++|+.|+++++..++. ..|. .+.. +++|++|+++++. +..+ ..
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~-L~~i-p~ 565 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNN-LEEF-PA 565 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSC-CCBC-CC
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCCc-CCcc-CC
Confidence 566666666666654444544555666666666666553332 1111 1222 2366666665543 2222 11
Q ss_pred --ccCC--------------CC-CCccCCCccceeeccccccccccccCcccccCCC-cceeeeccCCCCeeccCCCcCC
Q 045852 119 --SEGD--------------AA-NDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPS-LCDLSVSACPKMKIFCGGVFSA 180 (211)
Q Consensus 119 --~~~~--------------~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~-L~~L~i~~c~~l~~l~~~~~~~ 180 (211)
.-+. .. ..-..+++|+.|.++++. ++.++.. ...+++ |++|+++++. ++.+|......
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~-l~~lp~~--l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~ 641 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQ-IEEIPED--FCAFTDQVEGLGFSHNK-LKYIPNIFNAK 641 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSC-CSCCCTT--SCEECTTCCEEECCSSC-CCSCCSCCCTT
T ss_pred hhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCc-cccchHH--HhhccccCCEEECcCCC-CCcCchhhhcc
Confidence 0000 00 001124556666665542 3333322 334566 7777777774 45666544433
Q ss_pred --CCccEEEeccCC
Q 045852 181 --PRLKEVCLNDIE 192 (211)
Q Consensus 181 --~~L~~l~i~~c~ 192 (211)
++|+.|++.++.
T Consensus 642 ~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 642 SVYVMGSVDFSYNK 655 (876)
T ss_dssp CSSCEEEEECCSSC
T ss_pred ccCCCCEEECcCCc
Confidence 337777777764
No 71
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.02 E-value=8.5e-10 Score=89.39 Aligned_cols=188 Identities=16% Similarity=0.117 Sum_probs=118.2
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccC------CchhhhcCCccEEecccCccccccCCC-CCCCCC
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQN------SKLNTVFQNLETLSAHFCLNLTNLMPS-SASFRC 74 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~------~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~ 74 (211)
.+++++|+++++ +++.+..+.+ ..+++|++|++.... ......+++++++.+.++.+++.+.+. ...+++
T Consensus 29 ~~~l~~L~Ls~N-~i~~i~~~~f--~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~ 105 (350)
T 4ay9_X 29 PRNAIELRFVLT-KLRVIQKGAF--SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN 105 (350)
T ss_dssp CTTCSEEEEESC-CCSEECTTSS--TTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTT
T ss_pred CCCCCEEEccCC-cCCCcCHHHH--cCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccc
Confidence 357999999998 8888764322 458899999996532 223456777777777777888887654 457889
Q ss_pred ccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCC----------------C--CCCccCCCcccee
Q 045852 75 LTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGD----------------A--ANDEIIFPKLGYL 136 (211)
Q Consensus 75 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~----------------~--~~~~~~~~~L~~L 136 (211)
|++|+++++. ++..++. ......++..+++.++.++..+ ....-. . ........+|+.+
T Consensus 106 L~~L~l~~n~-l~~~~~~-~~~~~~~l~~l~l~~~~~i~~l-~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l 182 (350)
T 4ay9_X 106 LQYLLISNTG-IKHLPDV-HKIHSLQKVLLDIQDNINIHTI-ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDEL 182 (350)
T ss_dssp CCEEEEEEEC-CSSCCCC-TTCCBSSCEEEEEESCTTCCEE-CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEE
T ss_pred cccccccccc-cccCCch-hhcccchhhhhhhccccccccc-cccchhhcchhhhhhccccccccCCChhhccccchhHH
Confidence 9999998763 3433321 1234556677777777666665 221000 0 0011123456777
Q ss_pred eccccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCCCchhhch
Q 045852 137 ELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIEKLFYLLI 199 (211)
Q Consensus 137 ~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~~l~~~~~ 199 (211)
.+.++..++.++.+ .+..+++|+.|+++++ +++.+|.+ .+.+|++|.+.++..++.++.
T Consensus 183 ~l~~~n~l~~i~~~-~f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 183 NLSDNNNLEELPND-VFHGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp ECTTCTTCCCCCTT-TTTTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCCCC
T ss_pred hhccCCcccCCCHH-HhccCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcCCC
Confidence 77766667766553 2334577777777777 56667653 356677777777776665553
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.01 E-value=3.5e-09 Score=82.75 Aligned_cols=149 Identities=21% Similarity=0.155 Sum_probs=106.5
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEcc-----CCchhhhcCCccEEecccCccccccCCC-CCCCCCc
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQ-----NSKLNTVFQNLETLSAHFCLNLTNLMPS-SASFRCL 75 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~-----~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L 75 (211)
+++|+.|+++++ +++.+. ....+++|++|++... +......+++|++|+++++ .++.+.+. ...+++|
T Consensus 62 l~~L~~L~l~~n-~l~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 135 (272)
T 3rfs_A 62 LPNVRYLALGGN-KLHDIS----ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNL 135 (272)
T ss_dssp CTTCCEEECTTS-CCCCCG----GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTC
T ss_pred CCCCcEEECCCC-CCCCch----hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCC
Confidence 688999999998 666542 2346889999998542 3334577899999999987 46666554 5678999
Q ss_pred cEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCccccc
Q 045852 76 TKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFK 155 (211)
Q Consensus 76 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 155 (211)
++|+++++ .++.+.+ .....+++|++|+++++. +..+ ... .-..+++|+.|++.++ .++.+... ....
T Consensus 136 ~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~-~~~------~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~ 203 (272)
T 3rfs_A 136 TYLNLAHN-QLQSLPK-GVFDKLTNLTELDLSYNQ-LQSL-PEG------VFDKLTQLKDLRLYQN-QLKSVPDG-VFDR 203 (272)
T ss_dssp CEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCC-CTT------TTTTCTTCCEEECCSS-CCSCCCTT-TTTT
T ss_pred CEEECCCC-ccCccCH-HHhccCccCCEEECCCCC-cCcc-CHH------HhcCCccCCEEECCCC-cCCccCHH-HHhC
Confidence 99999998 4555543 234689999999999885 4444 110 0123789999999887 45555442 2346
Q ss_pred CCCcceeeeccCC
Q 045852 156 FPSLCDLSVSACP 168 (211)
Q Consensus 156 ~~~L~~L~i~~c~ 168 (211)
+++|++|++.+++
T Consensus 204 l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 204 LTSLQYIWLHDNP 216 (272)
T ss_dssp CTTCCEEECCSSC
T ss_pred CcCCCEEEccCCC
Confidence 7999999998875
No 73
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.00 E-value=1.8e-08 Score=90.59 Aligned_cols=81 Identities=20% Similarity=0.179 Sum_probs=45.0
Q ss_pred cccCccEEEEEcc-----CCchhhhcCCccEEecccCccccc-cCCC--CCCCCCccEEeeccCccchhccchHHHhccC
Q 045852 28 LLNKLEHLWLWEQ-----NSKLNTVFQNLETLSAHFCLNLTN-LMPS--SASFRCLTKLRVWACEHLINLVASSAAKNLV 99 (211)
Q Consensus 28 ~~~~Lk~L~l~~~-----~~~~~~~l~~L~~L~l~~c~~l~~-l~~~--~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~ 99 (211)
.+++|++|++... .......+++|++|+++++. +.. ++.. ...+++|++|+++++.- ....+....++++
T Consensus 71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~l-~~~~~~~~~~~L~ 148 (844)
T 3j0a_A 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQI-RSLYLHPSFGKLN 148 (844)
T ss_dssp SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCCC-CCCCCCGGGGTCS
T ss_pred CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCcc-cccccchhHhhCC
Confidence 4556666665321 12233456666666666653 332 2222 55677777777777643 3332223456788
Q ss_pred CCcEEEEeecC
Q 045852 100 QLVHVSVSECS 110 (211)
Q Consensus 100 ~L~~L~i~~c~ 110 (211)
+|++|+++++.
T Consensus 149 ~L~~L~Ls~N~ 159 (844)
T 3j0a_A 149 SLKSIDFSSNQ 159 (844)
T ss_dssp SCCEEEEESSC
T ss_pred CCCEEECCCCc
Confidence 88888877653
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.00 E-value=8.7e-09 Score=89.64 Aligned_cols=58 Identities=17% Similarity=0.028 Sum_probs=38.5
Q ss_pred CCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCCCc
Q 045852 130 FPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIEKL 194 (211)
Q Consensus 130 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~~l 194 (211)
+++|+.|+++++ .++.++. .+++|+.|++++| +++.+|..+..+++|+.|++.+++--
T Consensus 240 l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 240 PSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred CCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCC
Confidence 345555555554 3443322 4577888888887 56677777777888888988887643
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.99 E-value=3.9e-11 Score=103.32 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=72.3
Q ss_pred CCCccEEEeccccccceecccc------------cCcccccCccEEEEEccCCc------hhhhcCCccEEecccCcccc
Q 045852 2 LPNLEELRLSKNKDIAKIWQGP------------FTDHLLNKLEHLWLWEQNSK------LNTVFQNLETLSAHFCLNLT 63 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~------------~~~~~~~~Lk~L~l~~~~~~------~~~~l~~L~~L~l~~c~~l~ 63 (211)
|++|++|++++|..+.++...+ .....+++|++|++...... ....+++|++|++.+|..++
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 6789999999987665442110 00135789999998764332 12368999999999997766
Q ss_pred c--cCCCCCCCCCccEEeeccCccchhccc---hHHHhccCCCcEEEEeecC
Q 045852 64 N--LMPSSASFRCLTKLRVWACEHLINLVA---SSAAKNLVQLVHVSVSECS 110 (211)
Q Consensus 64 ~--l~~~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~i~~c~ 110 (211)
. +......+++|++|++++|. +.+... ......+++|++|++++|.
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred HHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 5 22223368999999999987 443321 1123467899999998875
No 76
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.99 E-value=5.1e-11 Score=102.59 Aligned_cols=103 Identities=14% Similarity=-0.011 Sum_probs=54.2
Q ss_pred CCccEEEeccccccceecccccCcccccCccEEEEEccCC-----chhhhcCCccEEeccc----------CccccccC-
Q 045852 3 PNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNS-----KLNTVFQNLETLSAHF----------CLNLTNLM- 66 (211)
Q Consensus 3 ~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~-----~~~~~l~~L~~L~l~~----------c~~l~~l~- 66 (211)
++|++|++++|. ++..... .....+++|++|++..... .....+++|++|++.+ |..++...
T Consensus 293 ~~L~~L~Ls~~~-l~~~~~~-~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~ 370 (592)
T 3ogk_B 293 AQIRKLDLLYAL-LETEDHC-TLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370 (592)
T ss_dssp GGCCEEEETTCC-CCHHHHH-HHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH
T ss_pred CCCcEEecCCCc-CCHHHHH-HHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH
Confidence 466777777663 3221110 0013567777777753211 1224567788888774 65554321
Q ss_pred -CCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEee
Q 045852 67 -PSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSE 108 (211)
Q Consensus 67 -~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 108 (211)
.....+++|++|++ +|..+++.........+++|++|++..
T Consensus 371 ~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~ 412 (592)
T 3ogk_B 371 IALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVL 412 (592)
T ss_dssp HHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEE
T ss_pred HHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEee
Confidence 11223667777777 455555543333344567777777764
No 77
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.99 E-value=6e-09 Score=88.44 Aligned_cols=139 Identities=16% Similarity=0.176 Sum_probs=88.4
Q ss_pred hhcCCccEEecccCccccc-cCCCCCCCCCccEEeeccCccchhcc-chHHHhccCCCcEEEEeecCCCcE-Eeccc-cC
Q 045852 46 TVFQNLETLSAHFCLNLTN-LMPSSASFRCLTKLRVWACEHLINLV-ASSAAKNLVQLVHVSVSECSKITE-LVVAS-EG 121 (211)
Q Consensus 46 ~~l~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~i~~c~~l~~-~~~~~-~~ 121 (211)
..+++|++|+++++. +.. ++..+..+++|++|+++++.- +.+. .+.....+++|++|+++++. +.. + ... -.
T Consensus 321 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l-~~~~~~ 396 (520)
T 2z7x_B 321 SKISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMNQL-KELSKIAEMTTQMKSLQQLDISQNS-VSYDE-KKGDCS 396 (520)
T ss_dssp SSCCCCCEEECCSSC-CCTTTTTTCCCCSSCCEEECCSSCC-CBHHHHHHHHTTCTTCCEEECCSSC-CBCCG-GGCSCC
T ss_pred hhCCcccEEEeECCc-cChhhhhhhccCCCCCEEEccCCcc-CccccchHHHhhCCCCCEEECCCCc-CCccc-ccchhc
Confidence 567888888888874 443 445667889999999988753 3221 11246788999999998765 333 2 110 00
Q ss_pred C--------------CCCCccCC-CccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCC-CcCCCCccE
Q 045852 122 D--------------AANDEIIF-PKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGG-VFSAPRLKE 185 (211)
Q Consensus 122 ~--------------~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~ 185 (211)
. .......+ ++|+.|+++++ .++.++.. ...+++|++|+++++ +++.+|.. +..+++|++
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~ 472 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQ--VVKLEALQELNVASN-QLKSVPDGIFDRLTSLQK 472 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGG--GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred cCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchh--hhcCCCCCEEECCCC-cCCccCHHHhccCCcccE
Confidence 0 00000112 46777777766 45555442 336788999999888 56778776 556788999
Q ss_pred EEeccCC
Q 045852 186 VCLNDIE 192 (211)
Q Consensus 186 l~i~~c~ 192 (211)
|++.+++
T Consensus 473 L~l~~N~ 479 (520)
T 2z7x_B 473 IWLHTNP 479 (520)
T ss_dssp EECCSSC
T ss_pred EECcCCC
Confidence 9988765
No 78
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.99 E-value=9.4e-09 Score=83.22 Aligned_cols=162 Identities=16% Similarity=0.127 Sum_probs=106.1
Q ss_pred ccCccEEEEEc-----cCCchhhhcCCccEEecccCccccccCCC-CCCCCCccEEeeccCccchhccchHHHhccCCCc
Q 045852 29 LNKLEHLWLWE-----QNSKLNTVFQNLETLSAHFCLNLTNLMPS-SASFRCLTKLRVWACEHLINLVASSAAKNLVQLV 102 (211)
Q Consensus 29 ~~~Lk~L~l~~-----~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 102 (211)
++++++|++.. .+......+++|++|+++++.-.+.+.+. ...++++.++.+.++..++.+.+. ....+++|+
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~-~f~~l~~L~ 107 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE-AFQNLPNLQ 107 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT-SBCCCTTCC
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch-hhhhccccc
Confidence 56899999864 34445678999999999998655655543 456888888888888888887542 346899999
Q ss_pred EEEEeecCCCcEEeccccC------------C----CCCCccCC----CccceeeccccccccccccCcccccCCCccee
Q 045852 103 HVSVSECSKITELVVASEG------------D----AANDEIIF----PKLGYLELHRLQSLTTFCSANYTFKFPSLCDL 162 (211)
Q Consensus 103 ~L~i~~c~~l~~~~~~~~~------------~----~~~~~~~~----~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L 162 (211)
+|+++++. +..+ ..... . ...+...| ..++.|.+.+. .++.++.+ ....++|+++
T Consensus 108 ~L~l~~n~-l~~~-~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~--~f~~~~L~~l 182 (350)
T 4ay9_X 108 YLLISNTG-IKHL-PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNS--AFNGTQLDEL 182 (350)
T ss_dssp EEEEEEEC-CSSC-CCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTT--SSTTEEEEEE
T ss_pred cccccccc-cccC-Cchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChh--hccccchhHH
Confidence 99999875 3332 11100 0 00001112 23555555543 45555443 3345678888
Q ss_pred eeccCCCCeeccCCC-cCCCCccEEEeccCCCchhh
Q 045852 163 SVSACPKMKIFCGGV-FSAPRLKEVCLNDIEKLFYL 197 (211)
Q Consensus 163 ~i~~c~~l~~l~~~~-~~~~~L~~l~i~~c~~l~~~ 197 (211)
.+.++..++.+|.+. ..+++|+.|++.++. +..+
T Consensus 183 ~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~l 217 (350)
T 4ay9_X 183 NLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSL 217 (350)
T ss_dssp ECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCC
T ss_pred hhccCCcccCCCHHHhccCcccchhhcCCCC-cCcc
Confidence 888888899888764 567889999998873 4443
No 79
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.98 E-value=1e-09 Score=95.75 Aligned_cols=101 Identities=11% Similarity=0.040 Sum_probs=60.5
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccC-Cc------hhhhc------CCccEEecccCccccccCC-
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQN-SK------LNTVF------QNLETLSAHFCLNLTNLMP- 67 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~-~~------~~~~l------~~L~~L~l~~c~~l~~l~~- 67 (211)
+++|++|++++| ++....+ .....+++|++|++.... .. ....+ ++|++|.++++ +++.++.
T Consensus 248 l~~L~~L~L~~n-~l~~~~p--~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~ 323 (636)
T 4eco_A 248 LKDLTDVEVYNC-PNLTKLP--TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVE 323 (636)
T ss_dssp CTTCCEEEEECC-TTCSSCC--TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCH
T ss_pred cCCCCEEEecCC-cCCccCh--HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCch
Confidence 578888888888 3333221 122457788888875443 21 12233 78888888776 4455555
Q ss_pred -CCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeec
Q 045852 68 -SSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSEC 109 (211)
Q Consensus 68 -~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 109 (211)
.+..+++|++|+++++.--..++ ....+++|++|+++++
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip---~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLP---AFGSEIKLASLNLAYN 363 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECC---CCEEEEEESEEECCSS
T ss_pred hhhccCCCCCEEeCcCCcCccchh---hhCCCCCCCEEECCCC
Confidence 56677788888887764321332 3356666677666655
No 80
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.98 E-value=1.1e-08 Score=89.67 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=17.0
Q ss_pred cCCCcceeeeccCCCCeeccCCCcCCCCccEEEec
Q 045852 155 KFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLN 189 (211)
Q Consensus 155 ~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~ 189 (211)
.+++|++|++.++.--...|..+..+++|+.+++.
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (680)
T 1ziw_A 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304 (680)
T ss_dssp TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECT
T ss_pred CcccccEeeCCCCccCccChhhhcCCCCccEEecc
Confidence 45666666666664333333333334444444443
No 81
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.98 E-value=2.1e-09 Score=91.22 Aligned_cols=107 Identities=12% Similarity=0.085 Sum_probs=61.0
Q ss_pred hhcCCccEEecccCccccc-cCCC-CCCCCCccEEeeccCccchhccchHHHhcc-CCCcEEEEeecCCCcEEeccccCC
Q 045852 46 TVFQNLETLSAHFCLNLTN-LMPS-SASFRCLTKLRVWACEHLINLVASSAAKNL-VQLVHVSVSECSKITELVVASEGD 122 (211)
Q Consensus 46 ~~l~~L~~L~l~~c~~l~~-l~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~i~~c~~l~~~~~~~~~~ 122 (211)
..+++|++|+++++. +.. ++.. ...+++|+.|+++++.--...+ ..+ ++|++|+++++. ++.+ ..
T Consensus 371 ~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~l~~~L~~L~Ls~N~-l~~i-p~---- 438 (520)
T 2z7x_B 371 TQMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSNILTDTIF-----RCLPPRIKVLDLHSNK-IKSI-PK---- 438 (520)
T ss_dssp TTCTTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECCSSCCCGGGG-----GSCCTTCCEEECCSSC-CCCC-CG----
T ss_pred hhCCCCCEEECCCCc-CCcccccchhccCccCCEEECcCCCCCcchh-----hhhcccCCEEECCCCc-cccc-ch----
Confidence 345556666665542 222 3222 3345566666666654222211 122 566666666653 3333 11
Q ss_pred CCCCccCCCccceeeccccccccccccCcccccCCCcceeeeccCCC
Q 045852 123 AANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPK 169 (211)
Q Consensus 123 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~ 169 (211)
....+++|+.|+++++ .++.++.. ....+++|++|++.+++-
T Consensus 439 ---~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 439 ---QVVKLEALQELNVASN-QLKSVPDG-IFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp ---GGGGCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSCB
T ss_pred ---hhhcCCCCCEEECCCC-cCCccCHH-HhccCCcccEEECcCCCC
Confidence 1224889999999987 56766553 244678999999998873
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.97 E-value=1.6e-09 Score=86.26 Aligned_cols=177 Identities=18% Similarity=0.116 Sum_probs=117.1
Q ss_pred CCCccEEEeccccccceeccc--ccCcccccCccEEEEEccCC-----chhhhcCCccEEecccCccccc--cCCC--CC
Q 045852 2 LPNLEELRLSKNKDIAKIWQG--PFTDHLLNKLEHLWLWEQNS-----KLNTVFQNLETLSAHFCLNLTN--LMPS--SA 70 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~--~~~~~~~~~Lk~L~l~~~~~-----~~~~~l~~L~~L~l~~c~~l~~--l~~~--~~ 70 (211)
+++|+.|+++++ +++..... ......+++|++|++..... .....+++|++|+++++.-... +... ..
T Consensus 116 ~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 194 (310)
T 4glp_A 116 GLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH 194 (310)
T ss_dssp CBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred CCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence 578999999998 56543210 01113588999999965332 3445789999999999853322 2222 35
Q ss_pred CCCCccEEeeccCccchhccc--hHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccc
Q 045852 71 SFRCLTKLRVWACEHLINLVA--SSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFC 148 (211)
Q Consensus 71 ~l~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 148 (211)
.+++|++|++++|. ++.++. ....+.+++|++|+++++. +..+ ....-. .-...++|+.|+++++ .++.++
T Consensus 195 ~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~-~p~~~~---~~~~~~~L~~L~Ls~N-~l~~lp 267 (310)
T 4glp_A 195 KFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNS-LRAT-VNPSAP---RCMWSSALNSLNLSFA-GLEQVP 267 (310)
T ss_dssp SSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSC-CCCC-CCSCCS---SCCCCTTCCCEECCSS-CCCSCC
T ss_pred cCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCC-CCcc-chhhHH---hccCcCcCCEEECCCC-CCCchh
Confidence 78999999999985 443322 1124688999999999875 3333 110000 1111379999999876 466665
Q ss_pred cCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 149 SANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 149 ~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
.. . +++|++|+++++ +++.+|. ...+++|+.|++.+.+
T Consensus 268 ~~--~--~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 268 KG--L--PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp SC--C--CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred hh--h--cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCC
Confidence 42 2 389999999999 5666655 4567999999998764
No 83
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=4.6e-09 Score=94.56 Aligned_cols=148 Identities=14% Similarity=0.098 Sum_probs=93.6
Q ss_pred cCccEEEEEcc-----CCchhhhcCCccEEecccCccccccCCCCCC--------CCCccEEeeccCccchhccchHHHh
Q 045852 30 NKLEHLWLWEQ-----NSKLNTVFQNLETLSAHFCLNLTNLMPSSAS--------FRCLTKLRVWACEHLINLVASSAAK 96 (211)
Q Consensus 30 ~~Lk~L~l~~~-----~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~--------l~~L~~L~l~~c~~l~~~~~~~~~~ 96 (211)
++|+.|++... +......+++|+.|+++++ .+..++..... +++|+.|++++| .++.++. ...
T Consensus 673 ~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~--~l~ 748 (876)
T 4ecn_A 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSD--DFR 748 (876)
T ss_dssp CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCG--GGS
T ss_pred CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchH--Hhh
Confidence 36666665432 2222345678888888776 45555443332 238888888887 3444443 333
Q ss_pred --ccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccc-----cc-cccccCcccccCCCcceeeeccCC
Q 045852 97 --NLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQ-----SL-TTFCSANYTFKFPSLCDLSVSACP 168 (211)
Q Consensus 97 --~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~-----~l-~~~~~~~~~~~~~~L~~L~i~~c~ 168 (211)
.+++|+.|+++++. +..+ .. ....+++|+.|++++++ .+ ..++. ....+++|+.|++++|.
T Consensus 749 ~~~l~~L~~L~Ls~N~-L~~l-p~-------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~--~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 749 ATTLPYLSNMDVSYNC-FSSF-PT-------QPLNSSQLKAFGIRHQRDAEGNRILRQWPT--GITTCPSLIQLQIGSND 817 (876)
T ss_dssp TTTCTTCCEEECCSSC-CSSC-CC-------GGGGCTTCCEEECCCCBCTTCCBCCCCCCT--TGGGCSSCCEEECCSSC
T ss_pred hccCCCcCEEEeCCCC-CCcc-ch-------hhhcCCCCCEEECCCCCCcccccccccChH--HHhcCCCCCEEECCCCC
Confidence 78888888888764 3333 21 12247889999887633 22 22222 24467899999999995
Q ss_pred CCeeccCCCcCCCCccEEEeccCCCch
Q 045852 169 KMKIFCGGVFSAPRLKEVCLNDIEKLF 195 (211)
Q Consensus 169 ~l~~l~~~~~~~~~L~~l~i~~c~~l~ 195 (211)
- ..+|.... ++|+.|++.+|+-..
T Consensus 818 L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 818 I-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp C-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred C-CccCHhhc--CCCCEEECCCCCCCc
Confidence 4 88888644 789999999987543
No 84
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.95 E-value=1.4e-08 Score=87.20 Aligned_cols=139 Identities=18% Similarity=0.189 Sum_probs=84.0
Q ss_pred hhcCCccEEecccCccccc-cCCCCCCCCCccEEeeccCccchhccc-hHHHhccCCCcEEEEeecCCCcE-Eeccc---
Q 045852 46 TVFQNLETLSAHFCLNLTN-LMPSSASFRCLTKLRVWACEHLINLVA-SSAAKNLVQLVHVSVSECSKITE-LVVAS--- 119 (211)
Q Consensus 46 ~~l~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~i~~c~~l~~-~~~~~--- 119 (211)
..+++|++|+++++. ++. ++.....+++|+.|+++++. ++.+.. +.....+++|++|+++++. +.. + ...
T Consensus 350 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~-~~~~~~ 425 (562)
T 3a79_B 350 PSPSSFTFLNFTQNV-FTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNS-LNSHA-YDRTCA 425 (562)
T ss_dssp SSCCCCCEEECCSSC-CCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSC-CBSCC-SSCCCC
T ss_pred cCCCCceEEECCCCc-cccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCc-CCCcc-Chhhhc
Confidence 466788888887763 333 34456678888888888763 443321 1134677888888887765 222 2 110
Q ss_pred ------------cCCCCCCccCC-CccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCC-CcCCCCccE
Q 045852 120 ------------EGDAANDEIIF-PKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGG-VFSAPRLKE 185 (211)
Q Consensus 120 ------------~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~ 185 (211)
..........+ ++|+.|+++++ .++.++.+ ...+++|++|+++++ +++.+|.+ ...+++|+.
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~ 501 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKD--VTHLQALQELNVASN-QLKSVPDGVFDRLTSLQY 501 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTT--TTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCC
T ss_pred CcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChh--hcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCE
Confidence 00000000112 46777777766 55655543 236788888888887 56677776 556788888
Q ss_pred EEeccCC
Q 045852 186 VCLNDIE 192 (211)
Q Consensus 186 l~i~~c~ 192 (211)
+++.+++
T Consensus 502 L~l~~N~ 508 (562)
T 3a79_B 502 IWLHDNP 508 (562)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 8887755
No 85
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.93 E-value=1.4e-08 Score=88.86 Aligned_cols=36 Identities=17% Similarity=0.003 Sum_probs=23.9
Q ss_pred CCcceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 157 PSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 157 ~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
++|++|+++++.--...+..+..+++|+.|++.++.
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred CCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 348888888774333333445567888888888764
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.93 E-value=5.8e-09 Score=82.41 Aligned_cols=142 Identities=20% Similarity=0.231 Sum_probs=105.7
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccCC---chhhhcCCccEEecccCccccccCCCCCCCCCccEE
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNS---KLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKL 78 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~---~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L 78 (211)
+++|+.|+++++ +++.+.. ...+++|++|++..... .....+++|++|+++++ .++.+ +.+..+++|+.|
T Consensus 67 l~~L~~L~L~~n-~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n-~i~~~-~~l~~l~~L~~L 139 (291)
T 1h6t_A 67 LPNVTKLFLNGN-KLTDIKP----LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN-GISDI-NGLVHLPQLESL 139 (291)
T ss_dssp CTTCCEEECCSS-CCCCCGG----GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTS-CCCCC-GGGGGCTTCCEE
T ss_pred CCCCCEEEccCC-ccCCCcc----cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCC-cCCCC-hhhcCCCCCCEE
Confidence 688999999998 7776643 35689999999865332 23567899999999987 46554 556788999999
Q ss_pred eeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccCCC
Q 045852 79 RVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPS 158 (211)
Q Consensus 79 ~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 158 (211)
+++++. ++.+. ....+++|++|+++++. +..+ .. ...+++|+.|+++++ .++++.. ...+++
T Consensus 140 ~l~~n~-l~~~~---~l~~l~~L~~L~L~~N~-l~~~-~~--------l~~l~~L~~L~L~~N-~i~~l~~---l~~l~~ 201 (291)
T 1h6t_A 140 YLGNNK-ITDIT---VLSRLTKLDTLSLEDNQ-ISDI-VP--------LAGLTKLQNLYLSKN-HISDLRA---LAGLKN 201 (291)
T ss_dssp ECCSSC-CCCCG---GGGGCTTCSEEECCSSC-CCCC-GG--------GTTCTTCCEEECCSS-CCCBCGG---GTTCTT
T ss_pred EccCCc-CCcch---hhccCCCCCEEEccCCc-cccc-hh--------hcCCCccCEEECCCC-cCCCChh---hccCCC
Confidence 999874 44442 56789999999999874 4444 21 233789999999887 4555532 446799
Q ss_pred cceeeeccCC
Q 045852 159 LCDLSVSACP 168 (211)
Q Consensus 159 L~~L~i~~c~ 168 (211)
|+.|++++++
T Consensus 202 L~~L~l~~n~ 211 (291)
T 1h6t_A 202 LDVLELFSQE 211 (291)
T ss_dssp CSEEEEEEEE
T ss_pred CCEEECcCCc
Confidence 9999998874
No 87
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.92 E-value=8.4e-09 Score=92.72 Aligned_cols=177 Identities=19% Similarity=0.112 Sum_probs=112.7
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEcc------CCchhhhcCCccEEecccCcccccc-CCCCCCCCC
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQ------NSKLNTVFQNLETLSAHFCLNLTNL-MPSSASFRC 74 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~------~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~ 74 (211)
.++|+.|+++++ .++.+... ....+++|++|++... +......+++|++|+++++. +..+ +.....+++
T Consensus 23 p~~l~~LdLs~N-~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 23 LNTTERLLLSFN-YIRTVTAS--SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFH 98 (844)
T ss_dssp CTTCCEEEEESC-CCCEECSS--SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSS
T ss_pred CCCcCEEECCCC-cCCccChh--HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcc
Confidence 467899999988 77776532 2246889999998654 12345778999999998874 5555 456778999
Q ss_pred ccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccc
Q 045852 75 LTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTF 154 (211)
Q Consensus 75 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 154 (211)
|++|++++|.--...+.....+.+++|++|+++++. +..+ ... ..-..+++|+.|++.++. ++..... ...
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~-~~~-----~~~~~L~~L~~L~Ls~N~-i~~~~~~-~l~ 169 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSL-YLH-----PSFGKLNSLKSIDFSSNQ-IFLVCEH-ELE 169 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCC-CCC-----GGGGTCSSCCEEEEESSC-CCCCCSG-GGH
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-cccc-ccc-----hhHhhCCCCCEEECCCCc-CCeeCHH-Hcc
Confidence 999999998533323322235789999999999875 3222 100 011237888888887752 3332221 111
Q ss_pred cC--CCcceeeeccCCCCeeccCCCcCCC------CccEEEeccC
Q 045852 155 KF--PSLCDLSVSACPKMKIFCGGVFSAP------RLKEVCLNDI 191 (211)
Q Consensus 155 ~~--~~L~~L~i~~c~~l~~l~~~~~~~~------~L~~l~i~~c 191 (211)
.+ ++|+.|.+.++.--...|.....++ +|+.|++.++
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence 22 6788888877754444444333333 3777777776
No 88
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.90 E-value=1.4e-09 Score=93.63 Aligned_cols=60 Identities=13% Similarity=0.050 Sum_probs=29.9
Q ss_pred hhcCCccEEecccCccccccC--CCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEee
Q 045852 46 TVFQNLETLSAHFCLNLTNLM--PSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSE 108 (211)
Q Consensus 46 ~~l~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 108 (211)
..+++|++|++++|. ++... .....+++|++|++++ .+.+.........+++|++|++.+
T Consensus 290 ~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 290 PFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp GGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred hhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeec
Confidence 445667777776665 32211 1124456666666652 222222222334566666666663
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.89 E-value=6.2e-09 Score=90.30 Aligned_cols=142 Identities=20% Similarity=0.223 Sum_probs=105.0
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccCC---chhhhcCCccEEecccCccccccCCCCCCCCCccEE
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNS---KLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKL 78 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~---~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L 78 (211)
+++|+.|++++| +++.+.. ...+++|++|++..... .....+++|+.|+++++ .+..+ +.+..+++|+.|
T Consensus 64 l~~L~~L~Ls~N-~l~~~~~----l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L 136 (605)
T 1m9s_A 64 LPNVTKLFLNGN-KLTDIKP----LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHN-GISDI-NGLVHLPQLESL 136 (605)
T ss_dssp CTTCCEEECTTS-CCCCCGG----GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTS-CCCCC-GGGGGCTTCSEE
T ss_pred CCCCCEEEeeCC-CCCCChh----hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCC-CCCCC-ccccCCCccCEE
Confidence 689999999998 7776643 35789999999855332 24567899999999887 45554 457788999999
Q ss_pred eeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccCCC
Q 045852 79 RVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPS 158 (211)
Q Consensus 79 ~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 158 (211)
++++|. +..+. .+..+++|+.|++++|. +..+ .. ...+++|+.|.++++ .+.+++ ....+++
T Consensus 137 ~Ls~N~-l~~l~---~l~~l~~L~~L~Ls~N~-l~~~-~~--------l~~l~~L~~L~Ls~N-~i~~l~---~l~~l~~ 198 (605)
T 1m9s_A 137 YLGNNK-ITDIT---VLSRLTKLDTLSLEDNQ-ISDI-VP--------LAGLTKLQNLYLSKN-HISDLR---ALAGLKN 198 (605)
T ss_dssp ECCSSC-CCCCG---GGGSCTTCSEEECCSSC-CCCC-GG--------GTTCTTCCEEECCSS-CCCBCG---GGTTCTT
T ss_pred ECCCCc-cCCch---hhcccCCCCEEECcCCc-CCCc-hh--------hccCCCCCEEECcCC-CCCCCh---HHccCCC
Confidence 999974 44442 56789999999999875 4443 11 233789999999887 455543 2446789
Q ss_pred cceeeeccCC
Q 045852 159 LCDLSVSACP 168 (211)
Q Consensus 159 L~~L~i~~c~ 168 (211)
|+.|++++|+
T Consensus 199 L~~L~L~~N~ 208 (605)
T 1m9s_A 199 LDVLELFSQE 208 (605)
T ss_dssp CSEEECCSEE
T ss_pred CCEEEccCCc
Confidence 9999998875
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.89 E-value=2.2e-08 Score=77.18 Aligned_cols=150 Identities=19% Similarity=0.129 Sum_probs=105.6
Q ss_pred CCccEEEeccccccceecccccCcccccCccEEEEEcc-----CCchhhhcCCccEEecccCccccccCCC-CCCCCCcc
Q 045852 3 PNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQ-----NSKLNTVFQNLETLSAHFCLNLTNLMPS-SASFRCLT 76 (211)
Q Consensus 3 ~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~-----~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~ 76 (211)
++++.|+++++ +++.+... ....+++|++|++... +......+++|++|+++++ .++.+.+. ...+++|+
T Consensus 35 ~~l~~L~L~~n-~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 110 (251)
T 3m19_A 35 ADTEKLDLQST-GLATLSDA--TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLD 110 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTT--TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCC
T ss_pred CCCCEEEccCC-CcCccCHh--HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCC
Confidence 56899999998 77766532 2246889999998542 2334567899999999886 56666543 46789999
Q ss_pred EEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccC
Q 045852 77 KLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKF 156 (211)
Q Consensus 77 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 156 (211)
+|+++++ .++.+++ .....+++|++|+++++. ++.+ ... .-..+++|+.|++++. .++.+... ....+
T Consensus 111 ~L~L~~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~-~~~------~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l 178 (251)
T 3m19_A 111 KLYLGGN-QLKSLPS-GVFDRLTKLKELRLNTNQ-LQSI-PAG------AFDKLTNLQTLSLSTN-QLQSVPHG-AFDRL 178 (251)
T ss_dssp EEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCC-CTT------TTTTCTTCCEEECCSS-CCSCCCTT-TTTTC
T ss_pred EEEcCCC-cCCCcCh-hHhccCCcccEEECcCCc-CCcc-CHH------HcCcCcCCCEEECCCC-cCCccCHH-HHhCC
Confidence 9999987 4555543 234679999999999874 5554 210 1123788999999886 45555542 23457
Q ss_pred CCcceeeeccCC
Q 045852 157 PSLCDLSVSACP 168 (211)
Q Consensus 157 ~~L~~L~i~~c~ 168 (211)
++|++|++.+++
T Consensus 179 ~~L~~L~l~~N~ 190 (251)
T 3m19_A 179 GKLQTITLFGNQ 190 (251)
T ss_dssp TTCCEEECCSCC
T ss_pred CCCCEEEeeCCc
Confidence 899999998875
No 91
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.88 E-value=1.8e-09 Score=78.16 Aligned_cols=129 Identities=21% Similarity=0.144 Sum_probs=67.8
Q ss_pred cccCccEEEEEccCC------chhhhcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCC
Q 045852 28 LLNKLEHLWLWEQNS------KLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQL 101 (211)
Q Consensus 28 ~~~~Lk~L~l~~~~~------~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L 101 (211)
.+++|++|++..... .....+++|++|+++++. ++.+ ..+..+++|+.|+++++.--..++ .....+++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L 97 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLD--MLAEKLPNL 97 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCC--HHHHHCTTC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHH--HHHhhCCCC
Confidence 356777777633221 123556777777777663 5555 555667777777777664322222 234457777
Q ss_pred cEEEEeecCCCcEEeccccCCCCCCccCCCccceeecccccccccccc--CcccccCCCcceeeeccCC
Q 045852 102 VHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCS--ANYTFKFPSLCDLSVSACP 168 (211)
Q Consensus 102 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~~~~L~~L~i~~c~ 168 (211)
++|+++++. +..+ ... ..-..+++|+.|++.+++ ++.++. ......+++|++|++.+|+
T Consensus 98 ~~L~Ls~N~-l~~~-~~~-----~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 98 THLNLSGNK-LKDI-STL-----EPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CEEECBSSS-CCSS-GGG-----GGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CEEeccCCc-cCcc-hhH-----HHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 777777663 3332 100 011225666777666652 333322 0012345667777666664
No 92
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.82 E-value=1.8e-08 Score=87.69 Aligned_cols=52 Identities=17% Similarity=0.070 Sum_probs=34.2
Q ss_pred CccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 131 PKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 131 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
++|+.|+++++ .++.++ ..+++|+.|+++++ +++.+|. .+++|+.|++.+|.
T Consensus 221 ~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 221 SGLKELIVSGN-RLTSLP-----VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp TTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC
T ss_pred CCCCEEEccCC-ccCcCC-----CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCC
Confidence 55666666554 344433 23477888888887 5666765 45788888888874
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.82 E-value=3.2e-08 Score=85.20 Aligned_cols=168 Identities=16% Similarity=0.077 Sum_probs=84.5
Q ss_pred CccEEEeccccccceecccccCcccccCccEEEEEccCCc-hhhhcCCccEEecccCccccccCCCCCCCCCccEEeecc
Q 045852 4 NLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNSK-LNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWA 82 (211)
Q Consensus 4 ~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 82 (211)
+|+.|+++++ +++.+... .+++|++|++...... ....+++|++|+++++ .++.++. +. .+|+.|++++
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~-----l~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N-~l~~ip~-l~--~~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDN-----LPPQITVLEITQNALISLPELPASLEYLDACDN-RLSTLPE-LP--ASLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSS-CCSCCCSC-----CCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCCC-CC--TTCCEEECCS
T ss_pred CccEEEeCCC-CCCccCHh-----HcCCCCEEECcCCCCcccccccCCCCEEEccCC-CCCCcch-hh--cCCCEEECCC
Confidence 5667777766 55554321 1356666665332111 1133456666666554 3443322 21 1555555555
Q ss_pred CccchhccchHHHhccCCCcEEEEeecC---------CCcEEeccccCCCCCCccCCCccceeeccccccccccccCccc
Q 045852 83 CEHLINLVASSAAKNLVQLVHVSVSECS---------KITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYT 153 (211)
Q Consensus 83 c~~l~~~~~~~~~~~l~~L~~L~i~~c~---------~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 153 (211)
+. ++.++. .+++|+.|+++++. +++.+.+........+.. .++|+.|+++++ .++.++. .
T Consensus 130 N~-l~~lp~-----~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~lp~l-~~~L~~L~Ls~N-~L~~lp~---~ 198 (571)
T 3cvr_A 130 NQ-LTMLPE-----LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPEL-PESLEALDVSTN-LLESLPA---V 198 (571)
T ss_dssp SC-CSCCCC-----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC-CTTCCEEECCSS-CCSSCCC---C
T ss_pred Cc-CCCCCC-----cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCCcchh-hCCCCEEECcCC-CCCchhh---H
Confidence 32 222221 34455555554432 111110100000000111 167888888765 4554433 1
Q ss_pred ccCCCc-------ceeeeccCCCCeeccCCCcCCCCccEEEeccCCCch
Q 045852 154 FKFPSL-------CDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIEKLF 195 (211)
Q Consensus 154 ~~~~~L-------~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~~l~ 195 (211)
..+| +.|+++++ +++.+|.++..+++|+.|++.+++--.
T Consensus 199 --~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 199 --PVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp --C--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred --HHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 1256 88999888 677788877778999999999886443
No 94
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.82 E-value=1.1e-07 Score=81.45 Aligned_cols=99 Identities=23% Similarity=0.252 Sum_probs=49.6
Q ss_pred CCccEEEeccccccceecccccCcccccCccEEEEEcc-----CCchhhhcCCccEEecccCccccccCCCCCCCCCccE
Q 045852 3 PNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQ-----NSKLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTK 77 (211)
Q Consensus 3 ~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~-----~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~ 77 (211)
++|++|+++++ +++.+... ....+++|++|++... +......+++|++|+++++ .++.++.. .+++|++
T Consensus 52 ~~L~~L~Ls~N-~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~ 125 (562)
T 3a79_B 52 PRTKALSLSQN-SISELRMP--DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRH 125 (562)
T ss_dssp TTCCEEECCSS-CCCCCCGG--GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSE
T ss_pred CCcCEEECCCC-CccccChh--hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCE
Confidence 45666666666 45544321 1134566666665322 1223345666666666654 34444333 5566666
Q ss_pred EeeccCccchhccchHHHhccCCCcEEEEee
Q 045852 78 LRVWACEHLINLVASSAAKNLVQLVHVSVSE 108 (211)
Q Consensus 78 L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 108 (211)
|+++++. ++.+..+.....+++|++|++++
T Consensus 126 L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~ 155 (562)
T 3a79_B 126 LDLSFND-FDVLPVCKEFGNLTKLTFLGLSA 155 (562)
T ss_dssp EECCSSC-CSBCCCCGGGGGCTTCCEEEEEC
T ss_pred EECCCCC-ccccCchHhhcccCcccEEecCC
Confidence 6666543 22222112334555555555554
No 95
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.81 E-value=2.7e-08 Score=71.86 Aligned_cols=133 Identities=20% Similarity=0.133 Sum_probs=93.4
Q ss_pred hcCCccEEecccCcccc--ccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCC
Q 045852 47 VFQNLETLSAHFCLNLT--NLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAA 124 (211)
Q Consensus 47 ~l~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 124 (211)
..++|++|.+++|. ++ .++.....+++|+.|++++|. ++.+. ....+++|++|+++++. +... ++
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~---~~~~l~~L~~L~Ls~N~-l~~~-~~------ 88 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISVS---NLPKLPKLKKLELSENR-IFGG-LD------ 88 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCCS---SCCCCSSCCEEEEESCC-CCSC-CC------
T ss_pred CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCChh---hhccCCCCCEEECcCCc-CchH-HH------
Confidence 34789999999875 55 565556788999999999876 55542 45688999999999875 3331 10
Q ss_pred CCc-cCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccC----CCcCCCCccEEEeccCCCch
Q 045852 125 NDE-IIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCG----GVFSAPRLKEVCLNDIEKLF 195 (211)
Q Consensus 125 ~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~----~~~~~~~L~~l~i~~c~~l~ 195 (211)
.. ..+++|+.|++.++ .+++++.......+++|++|++++++ +..++. .+..+++|++|++.+|....
T Consensus 89 -~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 89 -MLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp -HHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred -HHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 11 12788999999887 55665421234467899999999984 555554 44567899999998886544
No 96
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.81 E-value=6.1e-08 Score=81.29 Aligned_cols=72 Identities=19% Similarity=0.080 Sum_probs=34.0
Q ss_pred cCccEEEEEccCCchhhhc-CCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEee
Q 045852 30 NKLEHLWLWEQNSKLNTVF-QNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSE 108 (211)
Q Consensus 30 ~~Lk~L~l~~~~~~~~~~l-~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 108 (211)
++|++|++..........+ ++|++|+++++ .++.++ .+..+++|++|+++++. ++.++. ..++|++|++++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~-----~~~~L~~L~L~~ 182 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLPPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNS-LKKLPD-----LPPSLEFIAAGN 182 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCCTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCS
T ss_pred CCCcEEECCCCccCcccCCCCCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCc-CcccCC-----CcccccEEECcC
Confidence 4555555533222211122 46666666655 344432 45556666666666653 333221 223555555554
Q ss_pred c
Q 045852 109 C 109 (211)
Q Consensus 109 c 109 (211)
+
T Consensus 183 n 183 (454)
T 1jl5_A 183 N 183 (454)
T ss_dssp S
T ss_pred C
Confidence 4
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.78 E-value=4e-08 Score=76.47 Aligned_cols=141 Identities=19% Similarity=0.198 Sum_probs=79.3
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEccCCc---hhhhcCCccEEecccCccccccCCCCCCCCCccEE
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNSK---LNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKL 78 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~~---~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L 78 (211)
+++|+.|+++++ +++.+. ....+++|++|++...... ....+++|++|+++++ +++.+.. ... ++|+.|
T Consensus 40 l~~L~~L~l~~n-~i~~l~----~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N-~l~~l~~-~~~-~~L~~L 111 (263)
T 1xeu_A 40 LSGVQNFNGDNS-NIQSLA----GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN-RLKNLNG-IPS-ACLSRL 111 (263)
T ss_dssp HTTCSEEECTTS-CCCCCT----TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS-CCSCCTT-CCC-SSCCEE
T ss_pred cCcCcEEECcCC-Ccccch----HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC-ccCCcCc-ccc-CcccEE
Confidence 356777777776 555543 1235677777776432211 1456677777777665 4444432 222 777777
Q ss_pred eeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccCCC
Q 045852 79 RVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPS 158 (211)
Q Consensus 79 ~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 158 (211)
+++++ .++.+. ....+++|+.|+++++. ++.+ . ....+++|+.|+++++ .++++ .....+++
T Consensus 112 ~L~~N-~l~~~~---~l~~l~~L~~L~Ls~N~-i~~~-~--------~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~ 173 (263)
T 1xeu_A 112 FLDNN-ELRDTD---SLIHLKNLEILSIRNNK-LKSI-V--------MLGFLSKLEVLDLHGN-EITNT---GGLTRLKK 173 (263)
T ss_dssp ECCSS-CCSBSG---GGTTCTTCCEEECTTSC-CCBC-G--------GGGGCTTCCEEECTTS-CCCBC---TTSTTCCC
T ss_pred EccCC-ccCCCh---hhcCcccccEEECCCCc-CCCC-h--------HHccCCCCCEEECCCC-cCcch---HHhccCCC
Confidence 77776 344432 34567777777776654 3333 1 1122667777777665 33433 12334567
Q ss_pred cceeeeccCC
Q 045852 159 LCDLSVSACP 168 (211)
Q Consensus 159 L~~L~i~~c~ 168 (211)
|+.|++++++
T Consensus 174 L~~L~l~~N~ 183 (263)
T 1xeu_A 174 VNWIDLTGQK 183 (263)
T ss_dssp CCEEEEEEEE
T ss_pred CCEEeCCCCc
Confidence 7777776653
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.73 E-value=5.6e-08 Score=75.64 Aligned_cols=160 Identities=16% Similarity=0.160 Sum_probs=107.5
Q ss_pred ccEEEeccccccceecccccCcccccCccEEEEEccCC---chhhhcCCccEEecccCccccccCCCCCCCCCccEEeec
Q 045852 5 LEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNS---KLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVW 81 (211)
Q Consensus 5 Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~---~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~ 81 (211)
+..++++++ +++++. ....+++|++|++..... .....+++|++|.++++ .++.+.+ +..+++|+.|+++
T Consensus 21 l~~l~l~~~-~i~~~~----~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 21 AVKQNLGKQ-SVTDLV----SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHTCS-CTTSEE----CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHhcCC-Cccccc----chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECC
Confidence 334444444 444443 124578899998754322 24567889999999876 5666655 7788999999999
Q ss_pred cCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccCCCcce
Q 045852 82 ACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCD 161 (211)
Q Consensus 82 ~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~ 161 (211)
++. ++.++. ... ++|++|+++++. +..+ . ....+++|+.|+++++ .++++. ....+++|++
T Consensus 94 ~N~-l~~l~~---~~~-~~L~~L~L~~N~-l~~~-~--------~l~~l~~L~~L~Ls~N-~i~~~~---~l~~l~~L~~ 154 (263)
T 1xeu_A 94 RNR-LKNLNG---IPS-ACLSRLFLDNNE-LRDT-D--------SLIHLKNLEILSIRNN-KLKSIV---MLGFLSKLEV 154 (263)
T ss_dssp SSC-CSCCTT---CCC-SSCCEEECCSSC-CSBS-G--------GGTTCTTCCEEECTTS-CCCBCG---GGGGCTTCCE
T ss_pred CCc-cCCcCc---ccc-CcccEEEccCCc-cCCC-h--------hhcCcccccEEECCCC-cCCCCh---HHccCCCCCE
Confidence 874 444432 122 889999998874 4433 1 1223788999999876 455553 2446799999
Q ss_pred eeeccCCCCeeccCCCcCCCCccEEEeccCC
Q 045852 162 LSVSACPKMKIFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 162 L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~ 192 (211)
|++++++ ++.+ .....+++|+.|++.+++
T Consensus 155 L~L~~N~-i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 155 LDLHGNE-ITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EECTTSC-CCBC-TTSTTCCCCCEEEEEEEE
T ss_pred EECCCCc-Ccch-HHhccCCCCCEEeCCCCc
Confidence 9999984 5555 445677999999998864
No 99
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.72 E-value=2.2e-07 Score=80.11 Aligned_cols=133 Identities=15% Similarity=0.083 Sum_probs=86.8
Q ss_pred hhcCCccEEecccCccccccC-CCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCC
Q 045852 46 TVFQNLETLSAHFCLNLTNLM-PSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAA 124 (211)
Q Consensus 46 ~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 124 (211)
..+++++.+.++++ .+.... .....+++|+.|+++++.......+ .....+++|++|+++++. ++.+ ...
T Consensus 442 ~~l~~l~~l~ls~n-~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~-~~~~~l~~L~~L~Ls~N~-L~~l-~~~----- 512 (635)
T 4g8a_A 442 LSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQ-LEQL-SPT----- 512 (635)
T ss_dssp TTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSC-CCEE-CTT-----
T ss_pred cccccccccccccc-ccccccccccccchhhhhhhhhhcccccccCc-hhhhhccccCEEECCCCc-cCCc-ChH-----
Confidence 44555666665543 222222 2345678899999998876655432 235678999999999884 7666 221
Q ss_pred CCccCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCC-CCccEEEecc
Q 045852 125 NDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSA-PRLKEVCLND 190 (211)
Q Consensus 125 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~-~~L~~l~i~~ 190 (211)
.-..+++|+.|++++. .++++... ....+++|+.|+++++.--...|..+..+ ++|+.|++.+
T Consensus 513 -~f~~l~~L~~L~Ls~N-~l~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 513 -AFNSLSSLQVLNMSHN-NFFSLDTF-PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp -TTTTCTTCCEEECTTS-CCCBCCCG-GGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred -HHcCCCCCCEEECCCC-cCCCCChh-HHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 0123788999999886 56666543 23467899999999995433344444455 6899999975
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.72 E-value=4.8e-08 Score=73.04 Aligned_cols=126 Identities=17% Similarity=0.061 Sum_probs=65.2
Q ss_pred ccCccEEEEEcc-----CCchhhhcCCccEEecccCccccccCCC-CCCCCCccEEeeccCccchhccchHHHhccCCCc
Q 045852 29 LNKLEHLWLWEQ-----NSKLNTVFQNLETLSAHFCLNLTNLMPS-SASFRCLTKLRVWACEHLINLVASSAAKNLVQLV 102 (211)
Q Consensus 29 ~~~Lk~L~l~~~-----~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 102 (211)
+++|++|++... +......+++|++|+++++ +++.+.+. ...+++|++|+++++. ++.+.+ .....+++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~ 103 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPN-GVFDKLTQLK 103 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCC
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc-CCccCH-hHhcCccCCC
Confidence 456666665332 2223345667777777664 45544433 3456777777776653 333322 1235667777
Q ss_pred EEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccCCCcceeeeccC
Q 045852 103 HVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSAC 167 (211)
Q Consensus 103 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c 167 (211)
+|+++++. +..+ ... .-..+++|+.|++.+. .++.+... ....+++|++|++.++
T Consensus 104 ~L~L~~N~-l~~~-~~~------~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 104 ELALNTNQ-LQSL-PDG------VFDKLTQLKDLRLYQN-QLKSVPDG-VFDRLTSLQYIWLHDN 158 (208)
T ss_dssp EEECCSSC-CCCC-CTT------TTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSC
T ss_pred EEEcCCCc-Cccc-CHh------HhccCCcCCEEECCCC-ccceeCHH-HhccCCCccEEEecCC
Confidence 77776553 3333 110 0112566777776654 34443332 1234566777776664
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.70 E-value=1.8e-09 Score=88.41 Aligned_cols=60 Identities=17% Similarity=0.269 Sum_probs=33.1
Q ss_pred CCccceeeccccccc-----cccccCcccccCCCcceeeeccCCCCee-----ccCCC--cCCCCccEEEeccCCC
Q 045852 130 FPKLGYLELHRLQSL-----TTFCSANYTFKFPSLCDLSVSACPKMKI-----FCGGV--FSAPRLKEVCLNDIEK 193 (211)
Q Consensus 130 ~~~L~~L~l~~c~~l-----~~~~~~~~~~~~~~L~~L~i~~c~~l~~-----l~~~~--~~~~~L~~l~i~~c~~ 193 (211)
+++|+.|+++++. + ..++. ....+++|++|++++|. +.. ++..+ ...++|++|++.+|.-
T Consensus 215 ~~~L~~L~Ls~n~-l~~~g~~~l~~--~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 215 CQELKVLDLQDNT-FTHLGSSALAI--ALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp CTTCCEEECCSSC-CHHHHHHHHHH--HGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred CCCccEEECcCCC-CCcHHHHHHHH--HHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 5667777776653 2 12221 12345777777777775 322 23322 2257788888777753
No 102
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.69 E-value=6.7e-09 Score=73.62 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=25.6
Q ss_pred CCccEEecccCcccc--ccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeec
Q 045852 49 QNLETLSAHFCLNLT--NLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSEC 109 (211)
Q Consensus 49 ~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 109 (211)
++|+.|.++++. ++ .++.....+++|+.|+++++ .++.. .....+++|++|+++++
T Consensus 17 ~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n 74 (149)
T 2je0_A 17 SDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDN 74 (149)
T ss_dssp GGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSS
T ss_pred ccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCC
Confidence 445555555542 33 33333344555555555554 22322 12344555555555544
No 103
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.67 E-value=2.4e-07 Score=77.62 Aligned_cols=143 Identities=17% Similarity=0.031 Sum_probs=72.2
Q ss_pred cCccEEEEEccCC---chhhhcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEE
Q 045852 30 NKLEHLWLWEQNS---KLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSV 106 (211)
Q Consensus 30 ~~Lk~L~l~~~~~---~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i 106 (211)
++|++|++..... +....+++|++|+++++ .++.++. ..++|++|+++++. ++.++ ..+.+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N-~l~~lp~---~~~~L~~L~L~~n~-l~~l~---~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN-SLKKLPD---LPPSLEFIAAGNNQ-LEELP---ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSSCC---CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCC-cCcccCC---CcccccEEECcCCc-CCcCc---cccCCCCCCEEEC
Confidence 5777777643211 12456677777777765 3444322 13477777777653 33332 2456667777766
Q ss_pred eecCCCcEE----------eccccCCCC-CCccCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccC
Q 045852 107 SECSKITEL----------VVASEGDAA-NDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCG 175 (211)
Q Consensus 107 ~~c~~l~~~----------~~~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~ 175 (211)
+++. +..+ .+....... ..-..+++|+.|+++++ .++.++. .+++|++|+++++. ++.+|.
T Consensus 203 ~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N-~l~~l~~-----~~~~L~~L~l~~N~-l~~l~~ 274 (454)
T 1jl5_A 203 DNNS-LKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN-LLKTLPD-----LPPSLEALNVRDNY-LTDLPE 274 (454)
T ss_dssp CSSC-CSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCSSCCS-----CCTTCCEEECCSSC-CSCCCC
T ss_pred CCCc-CCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCC-cCCcccc-----cccccCEEECCCCc-ccccCc
Confidence 6553 2111 010000000 00123556666666654 3333322 23667777777663 444554
Q ss_pred CCcCCCCccEEEeccC
Q 045852 176 GVFSAPRLKEVCLNDI 191 (211)
Q Consensus 176 ~~~~~~~L~~l~i~~c 191 (211)
. +++|++|++.++
T Consensus 275 ~---~~~L~~L~ls~N 287 (454)
T 1jl5_A 275 L---PQSLTFLDVSEN 287 (454)
T ss_dssp C---CTTCCEEECCSS
T ss_pred c---cCcCCEEECcCC
Confidence 2 356666666655
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.64 E-value=8.4e-09 Score=84.42 Aligned_cols=66 Identities=18% Similarity=0.030 Sum_probs=44.4
Q ss_pred CCCccceeeccccccccccccC---ccc--ccCCCcceeeeccCCCCe----eccCCC-cCCCCccEEEeccCCCch
Q 045852 129 IFPKLGYLELHRLQSLTTFCSA---NYT--FKFPSLCDLSVSACPKMK----IFCGGV-FSAPRLKEVCLNDIEKLF 195 (211)
Q Consensus 129 ~~~~L~~L~l~~c~~l~~~~~~---~~~--~~~~~L~~L~i~~c~~l~----~l~~~~-~~~~~L~~l~i~~c~~l~ 195 (211)
.+++|+.|.++++. ++..... ... ..+++|++|++++|.--. .+|... ..+++|++|++.+|+--.
T Consensus 242 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 242 SWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp GCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred cCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 36889999999874 3332110 011 237999999999995333 276655 346999999999987443
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.64 E-value=2.6e-07 Score=70.23 Aligned_cols=128 Identities=20% Similarity=0.104 Sum_probs=59.4
Q ss_pred CCccEEecccCccccccC-CCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCc
Q 045852 49 QNLETLSAHFCLNLTNLM-PSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDE 127 (211)
Q Consensus 49 ~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~ 127 (211)
++|++|.++++ .+..+. .....+++|++|+++++. +..+++ .....+++|++|+++++. ++.+ ... .-
T Consensus 40 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~-~~~~~l~~L~~L~Ls~N~-l~~l-~~~------~~ 108 (229)
T 3e6j_A 40 TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQ-LGALPV-GVFDSLTQLTVLDLGTNQ-LTVL-PSA------VF 108 (229)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCC-CTT------TT
T ss_pred CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCC-CCCcCh-hhcccCCCcCEEECCCCc-CCcc-Chh------Hh
Confidence 45555555554 233332 223455566666665543 233321 123455666666665542 3333 110 00
Q ss_pred cCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCC-CcCCCCccEEEeccC
Q 045852 128 IIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGG-VFSAPRLKEVCLNDI 191 (211)
Q Consensus 128 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~l~i~~c 191 (211)
..+++|+.|.+.+. .++.++.. ...+++|++|+++++ +++.++.+ +..+++|+.|++.+.
T Consensus 109 ~~l~~L~~L~Ls~N-~l~~lp~~--~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 109 DRLVHLKELFMCCN-KLTELPRG--IERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp TTCTTCCEEECCSS-CCCSCCTT--GGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CcchhhCeEeccCC-cccccCcc--cccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC
Confidence 12455666666544 34444332 234566666666665 44444432 333466666666553
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.63 E-value=6.3e-08 Score=68.50 Aligned_cols=125 Identities=23% Similarity=0.201 Sum_probs=74.7
Q ss_pred ccCccEEEEEccCC------chhhhcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCc
Q 045852 29 LNKLEHLWLWEQNS------KLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLV 102 (211)
Q Consensus 29 ~~~Lk~L~l~~~~~------~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 102 (211)
+++|++|++..... .....+++|++|+++++ .++.+ .....+++|+.|+++++.--..++ .....+++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLE--VLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTH--HHHHHCTTCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHH--HHhhhCCCCC
Confidence 45566666532111 12356788899999887 56666 667788999999999876333232 2456789999
Q ss_pred EEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccC--cccccCCCcceeeec
Q 045852 103 HVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSA--NYTFKFPSLCDLSVS 165 (211)
Q Consensus 103 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~~~~L~~L~i~ 165 (211)
+|+++++. ++.+ ... . .-..+++|+.|+++++ .++.++.. .....+++|++|+++
T Consensus 92 ~L~ls~N~-i~~~-~~~--~---~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNK-IKDL-STI--E---PLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSC-CCSH-HHH--G---GGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCc-CCCh-HHH--H---HHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 99998875 3332 100 0 1123677777777776 34443320 123345667766654
No 107
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.62 E-value=2.9e-07 Score=79.35 Aligned_cols=134 Identities=14% Similarity=0.025 Sum_probs=77.4
Q ss_pred hcCCccEEecccCccccccC-CCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCC
Q 045852 47 VFQNLETLSAHFCLNLTNLM-PSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAAN 125 (211)
Q Consensus 47 ~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 125 (211)
.+++|+.+.+.++....... .....+++++.++++.+.--. .. ......+++|+.|+++++.....+ ...
T Consensus 418 ~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~-~~-~~~~~~~~~L~~L~Ls~N~~~~~~-~~~------ 488 (635)
T 4g8a_A 418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AF-NGIFNGLSSLEVLKMAGNSFQENF-LPD------ 488 (635)
T ss_dssp TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE-CC-TTTTTTCTTCCEEECTTCEEGGGE-ECS------
T ss_pred ccccccchhhhhcccccccccccccccccccccccccccccc-cc-ccccccchhhhhhhhhhccccccc-Cch------
Confidence 34555555554443322221 123345566666666543221 11 113456677777777766533333 110
Q ss_pred CccCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCC-CcCCCCccEEEeccCC
Q 045852 126 DEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGG-VFSAPRLKEVCLNDIE 192 (211)
Q Consensus 126 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~l~i~~c~ 192 (211)
.-..+++|+.|+++++ .++++... ....+++|++|+++++ +++.++.. +..+++|+.|++.++.
T Consensus 489 ~~~~l~~L~~L~Ls~N-~L~~l~~~-~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 489 IFTELRNLTFLDLSQC-QLEQLSPT-AFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp CCTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred hhhhccccCEEECCCC-ccCCcChH-HHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCc
Confidence 1123678899999887 56666543 2446789999999988 56666543 4456899999998764
No 108
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.61 E-value=1.8e-08 Score=73.53 Aligned_cols=63 Identities=10% Similarity=0.293 Sum_probs=29.0
Q ss_pred CccEEecccCcccccc-CCCCCCCCCccEEeeccCccchhccchHHHhc---cCCCcEEEEeecCCCc
Q 045852 50 NLETLSAHFCLNLTNL-MPSSASFRCLTKLRVWACEHLINLVASSAAKN---LVQLVHVSVSECSKIT 113 (211)
Q Consensus 50 ~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~---l~~L~~L~i~~c~~l~ 113 (211)
+|++|++++|. +++. ...+..+++|++|++++|..+++......... .++|++|++++|.+++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 35555555554 3332 12233455555555555555555432222110 2345555555555443
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.61 E-value=7.1e-07 Score=67.43 Aligned_cols=127 Identities=17% Similarity=0.110 Sum_probs=65.5
Q ss_pred ccCccEEEEEcc------CCchhhhcCCccEEecccCccccccCC-CCCCCCCccEEeeccCccchhccchHHHhccCCC
Q 045852 29 LNKLEHLWLWEQ------NSKLNTVFQNLETLSAHFCLNLTNLMP-SSASFRCLTKLRVWACEHLINLVASSAAKNLVQL 101 (211)
Q Consensus 29 ~~~Lk~L~l~~~------~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L 101 (211)
...+++|++... +......+++|++|+++++ .++.+.+ .+..+++|++|+++++. ++.+.+ .....+++|
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L 107 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNR-LENVQH-KMFKGLESL 107 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCG-GGGTTCSSC
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCc-cCccCH-hHhcCCcCC
Confidence 345666665332 1223456677777777664 3555544 45566777777777653 333332 124566777
Q ss_pred cEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccCCCcceeeeccCC
Q 045852 102 VHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACP 168 (211)
Q Consensus 102 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 168 (211)
++|+++++. +..+ ... .-..+++|+.|++.+. .++.+... ....+++|++|++.+.+
T Consensus 108 ~~L~Ls~N~-l~~~-~~~------~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 108 KTLMLRSNR-ITCV-GND------SFIGLSSVRLLSLYDN-QITTVAPG-AFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CEEECTTSC-CCCB-CTT------SSTTCTTCSEEECTTS-CCCCBCTT-TTTTCTTCCEEECCSCC
T ss_pred CEEECCCCc-CCeE-CHh------HcCCCccCCEEECCCC-cCCEECHH-HhcCCCCCCEEEecCcC
Confidence 777776653 3332 110 0112556666666654 34444222 12345666666666554
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.59 E-value=5.9e-07 Score=67.04 Aligned_cols=131 Identities=19% Similarity=0.130 Sum_probs=93.7
Q ss_pred cCCccEEecccCccccccCCC-CCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCC
Q 045852 48 FQNLETLSAHFCLNLTNLMPS-SASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAAND 126 (211)
Q Consensus 48 l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 126 (211)
.++|++|+++++ +++.+.+. ...+++|++|+++++ .++.+++ .....+++|++|+++++. +..+ ... .
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~-~~~------~ 95 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPN-GVFNKLTSLTYLNLSTNQ-LQSL-PNG------V 95 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCC-CTT------T
T ss_pred CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccCh-hhcCCCCCcCEEECCCCc-CCcc-CHh------H
Confidence 568999999887 56666554 467999999999986 4555442 234689999999999875 4444 110 0
Q ss_pred ccCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCC-CcCCCCccEEEeccCC
Q 045852 127 EIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGG-VFSAPRLKEVCLNDIE 192 (211)
Q Consensus 127 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~l~i~~c~ 192 (211)
-..+++|+.|++++. .++.+... ....+++|++|+++++ +++.++.. +..+++|++|++.+++
T Consensus 96 ~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 96 FDKLTQLKELALNTN-QLQSLPDG-VFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred hcCccCCCEEEcCCC-cCcccCHh-HhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC
Confidence 123789999999876 45655442 2345799999999998 56666665 4567999999998843
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.59 E-value=5e-07 Score=68.28 Aligned_cols=36 Identities=14% Similarity=0.326 Sum_probs=15.2
Q ss_pred hhcCCccEEecccCccccccC-CCCCCCCCccEEeecc
Q 045852 46 TVFQNLETLSAHFCLNLTNLM-PSSASFRCLTKLRVWA 82 (211)
Q Consensus 46 ~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~ 82 (211)
..+++|++|+++++ .++.+. ..+..+++|++|++++
T Consensus 53 ~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 53 SPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCS
T ss_pred hCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCC
Confidence 33444555555443 233321 2333444455555444
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.59 E-value=5.2e-07 Score=77.69 Aligned_cols=70 Identities=19% Similarity=0.103 Sum_probs=49.0
Q ss_pred CccEEEEEccCCchh--hhcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEee
Q 045852 31 KLEHLWLWEQNSKLN--TVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSE 108 (211)
Q Consensus 31 ~Lk~L~l~~~~~~~~--~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 108 (211)
++++|++........ ..+++|++|+++++ +++.++ ..+++|+.|+++++ .++.++. .. .+|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~---l~--~~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQN-ALISLP---ELPASLEYLDACDN-RLSTLPE---LP--ASLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC---CC--TTCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCC-CCcccc---cccCCCCEEEccCC-CCCCcch---hh--cCCCEEECCC
Confidence 889998854332211 13578999999886 566654 56799999999997 4555542 12 2899999988
Q ss_pred cC
Q 045852 109 CS 110 (211)
Q Consensus 109 c~ 110 (211)
+.
T Consensus 130 N~ 131 (571)
T 3cvr_A 130 NQ 131 (571)
T ss_dssp SC
T ss_pred Cc
Confidence 64
No 113
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.54 E-value=6.9e-08 Score=70.37 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=17.4
Q ss_pred cCCCcceeeeccCCCCeeccCC----CcCCCCccEEEeccCC
Q 045852 155 KFPSLCDLSVSACPKMKIFCGG----VFSAPRLKEVCLNDIE 192 (211)
Q Consensus 155 ~~~~L~~L~i~~c~~l~~l~~~----~~~~~~L~~l~i~~c~ 192 (211)
.+++|++|++.+++ +..+|.. ...+++|+.|++.++.
T Consensus 111 ~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 111 SLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp GCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 34555555555553 2233332 2334555555555543
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.53 E-value=8.9e-07 Score=67.29 Aligned_cols=127 Identities=20% Similarity=0.154 Sum_probs=91.6
Q ss_pred cccCccEEEEEccC-----CchhhhcCCccEEecccCccccccCCC-CCCCCCccEEeeccCccchhccchHHHhccCCC
Q 045852 28 LLNKLEHLWLWEQN-----SKLNTVFQNLETLSAHFCLNLTNLMPS-SASFRCLTKLRVWACEHLINLVASSAAKNLVQL 101 (211)
Q Consensus 28 ~~~~Lk~L~l~~~~-----~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L 101 (211)
..++|++|++.... ......+++|++|+++++ .+..+.+. ...+++|+.|+++++ .++.+.+ .....+++|
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L 114 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN-QLTVLPS-AVFDRLVHL 114 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTC
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-cCCccCh-hHhCcchhh
Confidence 35899999985432 234567899999999886 46666554 467999999999997 4555543 234689999
Q ss_pred cEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcccccCCCcceeeeccCC
Q 045852 102 VHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACP 168 (211)
Q Consensus 102 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 168 (211)
++|+++++. +..+ .. ....+++|+.|++++. .++.+... ....+++|+.|++.+.|
T Consensus 115 ~~L~Ls~N~-l~~l-p~-------~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 115 KELFMCCNK-LTEL-PR-------GIERLTHLTHLALDQN-QLKSIPHG-AFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CEEECCSSC-CCSC-CT-------TGGGCTTCSEEECCSS-CCCCCCTT-TTTTCTTCCEEECTTSC
T ss_pred CeEeccCCc-cccc-Cc-------ccccCCCCCEEECCCC-cCCccCHH-HHhCCCCCCEEEeeCCC
Confidence 999998865 5444 21 1234889999999886 56666542 24467899999998876
No 115
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.52 E-value=3.4e-08 Score=72.10 Aligned_cols=94 Identities=13% Similarity=0.099 Sum_probs=63.7
Q ss_pred CCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcc
Q 045852 73 RCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANY 152 (211)
Q Consensus 73 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 152 (211)
.+|+.|++++|. +++..... +..+++|++|++++|.++++.-+..-.. .....++|++|++++|+++++-....
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~---~~~~~~~L~~L~Ls~C~~ITD~Gl~~- 134 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQ---LENLQKSMLEMEIISCGNVTDKGIIA- 134 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHT---CHHHHHHCCEEEEESCTTCCHHHHHH-
T ss_pred ceEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHh---cccccCCCCEEEcCCCCcCCHHHHHH-
Confidence 479999999997 77765333 3689999999999998765530000000 00012468899999998887754432
Q ss_pred cccCCCcceeeeccCCCCee
Q 045852 153 TFKFPSLCDLSVSACPKMKI 172 (211)
Q Consensus 153 ~~~~~~L~~L~i~~c~~l~~ 172 (211)
...+++|++|++++|++++.
T Consensus 135 L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGGCTTCCEEEEESCTTCCC
T ss_pred HhcCCCCCEEECCCCCCCCc
Confidence 23578899999999988775
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.52 E-value=9.7e-07 Score=66.69 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=91.9
Q ss_pred CCccEEecccCccccccCC-CCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCc
Q 045852 49 QNLETLSAHFCLNLTNLMP-SSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDE 127 (211)
Q Consensus 49 ~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~ 127 (211)
++|++|.+++. +++.+.+ ....+++|+.|+++++. ++.+.+ .....+++|++|+++++. ++.+ ... .-
T Consensus 32 ~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~-~~~~~l~~L~~L~Ls~N~-l~~l-~~~------~f 100 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAP-DAFQGLRSLNSLVLYGNK-ITEL-PKS------LF 100 (220)
T ss_dssp TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSC-CCEECT-TTTTTCSSCCEEECCSSC-CCCC-CTT------TT
T ss_pred cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCc-CCCcCH-HHhhCCcCCCEEECCCCc-CCcc-CHh------Hc
Confidence 57888998775 5666655 56678999999999874 444432 245789999999999874 5544 210 01
Q ss_pred cCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCC-CcCCCCccEEEeccCC
Q 045852 128 IIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGG-VFSAPRLKEVCLNDIE 192 (211)
Q Consensus 128 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~l~i~~c~ 192 (211)
..+++|+.|++++. .++.+... ....+++|++|+++++ +++.++.+ +..+++|+.|++.+.+
T Consensus 101 ~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 101 EGLFSLQLLLLNAN-KINCLRVD-AFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCC-CCCEeCHH-HcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 23788999999886 45555443 2446799999999998 45666654 5567999999998754
No 117
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.50 E-value=8.6e-09 Score=86.00 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=21.9
Q ss_pred CCCcceeeeccCCCCe-----eccCCCcCCCCccEEEeccCC
Q 045852 156 FPSLCDLSVSACPKMK-----IFCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 156 ~~~L~~L~i~~c~~l~-----~l~~~~~~~~~L~~l~i~~c~ 192 (211)
.++|++|++++|. ++ .++......++|++|++.+|+
T Consensus 369 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 369 GSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 4577777777773 33 344444445677777777663
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.49 E-value=5.7e-07 Score=72.98 Aligned_cols=167 Identities=19% Similarity=0.104 Sum_probs=103.4
Q ss_pred EEEeccccccceecccccCcccccCccEEEEEcc-----CCchhh-hcCCccEEecccCccccccCC-CCCCCCCccEEe
Q 045852 7 ELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQ-----NSKLNT-VFQNLETLSAHFCLNLTNLMP-SSASFRCLTKLR 79 (211)
Q Consensus 7 ~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~-----~~~~~~-~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~ 79 (211)
.+++++. +++.+.. .....++.|++... +..... .+++|++|+++++ +++.+.+ .+..+++|++|+
T Consensus 22 ~l~c~~~-~l~~iP~-----~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 22 ILSCSKQ-QLPNVPQ-----SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp EEECCSS-CCSSCCS-----SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEE
T ss_pred EEEeCCC-CcCccCc-----cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEE
Confidence 4444444 4554432 23456888887442 222333 7889999999876 5666654 466789999999
Q ss_pred eccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcc--cccCC
Q 045852 80 VWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANY--TFKFP 157 (211)
Q Consensus 80 l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~~~ 157 (211)
++++. ++.+.+ .....+++|+.|+++++. +..+ ... .-..+++|+.|++++. .++.++.... ...++
T Consensus 95 Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-i~~~-~~~------~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~ 163 (361)
T 2xot_A 95 LSSNH-LHTLDE-FLFSDLQALEVLLLYNNH-IVVV-DRN------AFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLP 163 (361)
T ss_dssp CCSSC-CCEECT-TTTTTCTTCCEEECCSSC-CCEE-CTT------TTTTCTTCCEEECCSS-CCCSCCGGGTC----CT
T ss_pred CCCCc-CCcCCH-HHhCCCcCCCEEECCCCc-ccEE-CHH------HhCCcccCCEEECCCC-cCCeeCHHHhcCcccCC
Confidence 99864 555442 235688999999998865 5555 210 1123788999998876 4555544211 03478
Q ss_pred CcceeeeccCCCCeeccCC-CcCCCC--ccEEEeccCC
Q 045852 158 SLCDLSVSACPKMKIFCGG-VFSAPR--LKEVCLNDIE 192 (211)
Q Consensus 158 ~L~~L~i~~c~~l~~l~~~-~~~~~~--L~~l~i~~c~ 192 (211)
+|+.|+++++ +++.+|.. +..++. ++.|.+.+.+
T Consensus 164 ~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 164 KLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp TCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred cCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence 9999999987 45655532 223344 4778887643
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.45 E-value=1.8e-06 Score=65.23 Aligned_cols=131 Identities=13% Similarity=0.027 Sum_probs=92.8
Q ss_pred cCCccEEecccCccccccCC--CCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCC
Q 045852 48 FQNLETLSAHFCLNLTNLMP--SSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAAN 125 (211)
Q Consensus 48 l~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 125 (211)
.+.+++|.+++. .++.+.+ ....+++|+.|+++++. ++.+.+ .....+++|++|+++++. +..+ ...
T Consensus 31 ~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~-~~~~~l~~L~~L~Ls~N~-l~~~-~~~------ 99 (220)
T 2v70_A 31 PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEE-GAFEGASGVNEILLTSNR-LENV-QHK------ 99 (220)
T ss_dssp CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSSC-CCCC-CGG------
T ss_pred CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECH-HHhCCCCCCCEEECCCCc-cCcc-CHh------
Confidence 456899999875 5666643 25689999999999865 555442 235789999999999875 4444 210
Q ss_pred CccCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeec-cCCCcCCCCccEEEeccCC
Q 045852 126 DEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIF-CGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 126 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-~~~~~~~~~L~~l~i~~c~ 192 (211)
.-..+++|+.|.+++. .++.+... ....+++|++|+++++ +++.+ |..+..+++|+.|++.+.+
T Consensus 100 ~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 100 MFKGLESLKTLMLRSN-RITCVGND-SFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp GGTTCSSCCEEECTTS-CCCCBCTT-SSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred HhcCCcCCCEEECCCC-cCCeECHh-HcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 0123789999999886 45555432 2446799999999998 45555 6666678999999998755
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.44 E-value=3e-07 Score=66.96 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=66.9
Q ss_pred CCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCcc
Q 045852 49 QNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEI 128 (211)
Q Consensus 49 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~ 128 (211)
++|++|+++++ .++.+ +.+..+++|+.|+++++. ++.+++ .....+++|++|+++++. +..+ ... ..-.
T Consensus 42 ~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-i~~~-~~~-----~~l~ 110 (176)
T 1a9n_A 42 DQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNR-ICRIGE-GLDQALPDLTELILTNNS-LVEL-GDL-----DPLA 110 (176)
T ss_dssp TCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSC-CCEECS-CHHHHCTTCCEEECCSCC-CCCG-GGG-----GGGG
T ss_pred CCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCc-ccccCc-chhhcCCCCCEEECCCCc-CCcc-hhh-----Hhhh
Confidence 47788888776 45555 566678888888888764 444432 234678888888888764 3333 110 0112
Q ss_pred CCCccceeeccccccccccccC--cccccCCCcceeeeccCCC
Q 045852 129 IFPKLGYLELHRLQSLTTFCSA--NYTFKFPSLCDLSVSACPK 169 (211)
Q Consensus 129 ~~~~L~~L~l~~c~~l~~~~~~--~~~~~~~~L~~L~i~~c~~ 169 (211)
.+++|+.|.+.+++ +..++.. .....+++|+.|++.+++.
T Consensus 111 ~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 111 SLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp GCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred cCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 37788888888764 3333221 0134578888888887753
No 121
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.39 E-value=1.8e-08 Score=84.09 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=19.9
Q ss_pred cCCCcceeeeccCCCCee-----ccCCC-cCCCCccEEEeccC
Q 045852 155 KFPSLCDLSVSACPKMKI-----FCGGV-FSAPRLKEVCLNDI 191 (211)
Q Consensus 155 ~~~~L~~L~i~~c~~l~~-----l~~~~-~~~~~L~~l~i~~c 191 (211)
.+++|++|++++|. +.. +..+. ...++|++|++.+|
T Consensus 225 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 225 SKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred hCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 35667777776663 322 11111 13567778887777
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.36 E-value=4.1e-06 Score=61.82 Aligned_cols=60 Identities=12% Similarity=0.074 Sum_probs=27.8
Q ss_pred CCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccC
Q 045852 130 FPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDI 191 (211)
Q Consensus 130 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c 191 (211)
+++|+.|++++. .++.+... ....+++|++|+++++.--...|..+..+++|++|++.+.
T Consensus 77 l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 77 ASHIQELQLGEN-KIKEISNK-MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CTTCCEEECCSC-CCCEECSS-SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred cccCCEEECCCC-cCCccCHH-HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 445555555543 23333321 1223455666666655322223444444556666666553
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.34 E-value=1.5e-07 Score=76.33 Aligned_cols=104 Identities=14% Similarity=0.043 Sum_probs=51.9
Q ss_pred CCccEEEeccccccceeccccc--Cccccc-CccEEEEEccCCc-----hhhhc-----CCccEEecccCccccccCC--
Q 045852 3 PNLEELRLSKNKDIAKIWQGPF--TDHLLN-KLEHLWLWEQNSK-----LNTVF-----QNLETLSAHFCLNLTNLMP-- 67 (211)
Q Consensus 3 ~~Le~L~l~~~~~l~~i~~~~~--~~~~~~-~Lk~L~l~~~~~~-----~~~~l-----~~L~~L~l~~c~~l~~l~~-- 67 (211)
++|++|++++| ++++...... ....++ +|++|++...... ....+ ++|++|++++|. ++...+
T Consensus 22 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~ 99 (362)
T 3goz_A 22 HGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDE 99 (362)
T ss_dssp TTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHH
T ss_pred CCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHH
Confidence 34788888877 5655442110 012345 7777777442211 12222 677777777763 333221
Q ss_pred ---CCCCC-CCccEEeeccCccchhccchHHH---hc-cCCCcEEEEeec
Q 045852 68 ---SSASF-RCLTKLRVWACEHLINLVASSAA---KN-LVQLVHVSVSEC 109 (211)
Q Consensus 68 ---~~~~l-~~L~~L~l~~c~~l~~~~~~~~~---~~-l~~L~~L~i~~c 109 (211)
.+..+ ++|++|+++++. +......... .. .++|++|+++++
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred HHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence 12223 567777776654 3433322221 12 246666666655
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.33 E-value=3.9e-06 Score=68.03 Aligned_cols=131 Identities=16% Similarity=0.030 Sum_probs=93.8
Q ss_pred cCCccEEecccCccccccCCCCC--CCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCC
Q 045852 48 FQNLETLSAHFCLNLTNLMPSSA--SFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAAN 125 (211)
Q Consensus 48 l~~L~~L~l~~c~~l~~l~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 125 (211)
.+.++.|++++. +++.+.+... .+++|+.|+++++. ++.+.+. ....+++|++|+++++. ++.+ ...
T Consensus 38 ~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~-~~~~l~~L~~L~Ls~N~-l~~~-~~~------ 106 (361)
T 2xot_A 38 PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSE-AFVPVPNLRYLDLSSNH-LHTL-DEF------ 106 (361)
T ss_dssp CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSSC-CCEE-CTT------
T ss_pred CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCc-CCccChh-hccCCCCCCEEECCCCc-CCcC-CHH------
Confidence 456899999886 6777766543 79999999999864 5555422 35689999999999865 6666 211
Q ss_pred CccCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCCC----cCCCCccEEEeccCC
Q 045852 126 DEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGV----FSAPRLKEVCLNDIE 192 (211)
Q Consensus 126 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~----~~~~~L~~l~i~~c~ 192 (211)
.-..+++|+.|++.+. .++.+..+ ....+++|++|+++++ +++.+|... ..+++|+.|++.++.
T Consensus 107 ~~~~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 107 LFSDLQALEVLLLYNN-HIVVVDRN-AFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp TTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred HhCCCcCCCEEECCCC-cccEECHH-HhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 0123788999999886 35555332 2446799999999998 667777654 357999999998864
No 125
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.32 E-value=8.9e-07 Score=72.07 Aligned_cols=161 Identities=15% Similarity=0.079 Sum_probs=96.5
Q ss_pred ccccCccEEEEEccC------C--------chhhhcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccch
Q 045852 27 HLLNKLEHLWLWEQN------S--------KLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVAS 92 (211)
Q Consensus 27 ~~~~~Lk~L~l~~~~------~--------~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~ 92 (211)
..+++|+.|.|.+.. + .....+|+|++|.+.++..+. + +. ...++|++|++..|. +..-...
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l-~~-~~~~~L~~L~L~~~~-l~~~~l~ 211 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-I-GK-KPRPNLKSLEIISGG-LPDSVVE 211 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-C-CS-CBCTTCSEEEEECSB-CCHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-e-cc-ccCCCCcEEEEecCC-CChHHHH
Confidence 468899999985421 1 123567999999999874443 2 22 348999999998775 3322211
Q ss_pred HHH-hccCCCcEEEEeecCCCcEEeccccC-CCCCCccCCCccceeeccccccccccccC-cccccCCCcceeeeccCCC
Q 045852 93 SAA-KNLVQLVHVSVSECSKITELVVASEG-DAANDEIIFPKLGYLELHRLQSLTTFCSA-NYTFKFPSLCDLSVSACPK 169 (211)
Q Consensus 93 ~~~-~~l~~L~~L~i~~c~~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~~~L~~L~i~~c~~ 169 (211)
... ..+|+|++|+++.+.+...-...... ........||+|+.|.+.+|..-...... .....+|.|++|+++.+ .
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~ 290 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-V 290 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-C
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-C
Confidence 122 37999999999743211000000000 00001234899999999887432111100 01235789999999765 4
Q ss_pred Cee-----ccCCCcCCCCccEEEeccCC
Q 045852 170 MKI-----FCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 170 l~~-----l~~~~~~~~~L~~l~i~~c~ 192 (211)
+.. ++.++..+++|+.|++.+|.
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 544 45544556999999998884
No 126
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.31 E-value=1.5e-07 Score=76.47 Aligned_cols=105 Identities=10% Similarity=0.063 Sum_probs=49.8
Q ss_pred CC-CccEEEeccccccceecccccCc---ccccCccEEEEEccCCc---------hhhhc-CCccEEecccCccccccCC
Q 045852 2 LP-NLEELRLSKNKDIAKIWQGPFTD---HLLNKLEHLWLWEQNSK---------LNTVF-QNLETLSAHFCLNLTNLMP 67 (211)
Q Consensus 2 l~-~Le~L~l~~~~~l~~i~~~~~~~---~~~~~Lk~L~l~~~~~~---------~~~~l-~~L~~L~l~~c~~l~~l~~ 67 (211)
++ +|++|++++| +++......+.. ..+++|++|++...... ....+ ++|++|+++++. ++....
T Consensus 49 ~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~ 126 (362)
T 3goz_A 49 TPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSS 126 (362)
T ss_dssp CCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCH
T ss_pred CCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHH
Confidence 44 6888888877 555543211110 11267777776443211 11223 677777776663 333221
Q ss_pred -----CCCC-CCCccEEeeccCccchhccchH---HHhccC-CCcEEEEeec
Q 045852 68 -----SSAS-FRCLTKLRVWACEHLINLVASS---AAKNLV-QLVHVSVSEC 109 (211)
Q Consensus 68 -----~~~~-l~~L~~L~l~~c~~l~~~~~~~---~~~~l~-~L~~L~i~~c 109 (211)
.+.. .++|++|++++|. +.+..... ....++ +|++|++++|
T Consensus 127 ~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 127 SEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 1112 2466666666653 22211111 122333 6666666655
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.25 E-value=9.2e-07 Score=78.33 Aligned_cols=108 Identities=23% Similarity=0.132 Sum_probs=59.1
Q ss_pred hhhcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCC
Q 045852 45 NTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAA 124 (211)
Q Consensus 45 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 124 (211)
...+++|+.|+++++. +..++..+..+++|++|+++++. ++.++. .+..+++|++|+++++. +..+ ..
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~--~~~~l~~L~~L~Ls~N~-l~~l-p~------ 287 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNS-LTELPA--EIKNLSNLRVLDLSHNR-LTSL-PA------ 287 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSC-CSCCCG--GGGGGTTCCEEECTTSC-CSSC-CS------
T ss_pred hccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCc-CcccCh--hhhCCCCCCEEeCcCCc-CCcc-Ch------
Confidence 3455667777776653 44555555566777777776653 333332 34566777777776654 3332 11
Q ss_pred CCccCCCccceeeccccccccccccCcccccCCCcceeeeccCC
Q 045852 125 NDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACP 168 (211)
Q Consensus 125 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 168 (211)
....+++|+.|.+.++ .++.++.. ...+++|++|++++++
T Consensus 288 -~~~~l~~L~~L~L~~N-~l~~lp~~--~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 288 -ELGSCFQLKYFYFFDN-MVTTLPWE--FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp -SGGGGTTCSEEECCSS-CCCCCCSS--TTSCTTCCCEECTTSC
T ss_pred -hhcCCCCCCEEECCCC-CCCccChh--hhcCCCccEEeCCCCc
Confidence 1122566666666655 34554432 3345667777766664
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.22 E-value=5.9e-08 Score=72.12 Aligned_cols=130 Identities=15% Similarity=0.088 Sum_probs=84.2
Q ss_pred hhhhcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCC
Q 045852 44 LNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDA 123 (211)
Q Consensus 44 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 123 (211)
....+++|++|+++++ .++.++ ....+++|+.|+++++. ++.++. ....+++|++|+++++. +..+ .
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~--~~~~~~~L~~L~L~~N~-l~~l-~------ 109 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIEN--LDAVADTLEELWISYNQ-IASL-S------ 109 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSS--HHHHHHHCSEEEEEEEE-CCCH-H------
T ss_pred HHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccc--hhhcCCcCCEEECcCCc-CCcC-C------
Confidence 4567888999998876 466554 66678899999998864 445543 45667889999998874 3333 1
Q ss_pred CCCccCCCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCC----------CcCCCCccEEEec
Q 045852 124 ANDEIIFPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGG----------VFSAPRLKEVCLN 189 (211)
Q Consensus 124 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~----------~~~~~~L~~l~i~ 189 (211)
....+++|+.|++.++ .++.+........+++|++|++.+++--...|.. ...+++|+.|+-.
T Consensus 110 --~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~ 182 (198)
T 1ds9_A 110 --GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM 182 (198)
T ss_dssp --HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCG
T ss_pred --ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCc
Confidence 1123678888888876 3444322112345788999999988543333332 3456888887633
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.10 E-value=5.8e-05 Score=54.60 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=29.9
Q ss_pred CCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCCC-cCCCCccEEEeccCC
Q 045852 130 FPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGV-FSAPRLKEVCLNDIE 192 (211)
Q Consensus 130 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~-~~~~~L~~l~i~~c~ 192 (211)
+++|+.|++.+. .++.++.. ....+++|++|+++++ +++.+|... ..+++|++|++.+++
T Consensus 75 l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 75 LTKLTILYLHEN-KLQSLPNG-VFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEEECCCC-CccccCHH-HhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 455555555543 23333321 1223456666666665 444555443 335666666666554
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.07 E-value=1.5e-05 Score=68.63 Aligned_cols=101 Identities=18% Similarity=0.165 Sum_probs=48.0
Q ss_pred CccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCccc
Q 045852 74 CLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANYT 153 (211)
Q Consensus 74 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 153 (211)
.|+.|+++++ .++.++ .++.+++|+.|+++++. ++.+ .. ....+++|+.|++++. .+++++ ..
T Consensus 442 ~L~~L~Ls~n-~l~~lp---~~~~l~~L~~L~Ls~N~-l~~l-p~-------~~~~l~~L~~L~Ls~N-~l~~lp---~l 504 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLC---HLEQLLLVTHLDLSHNR-LRAL-PP-------ALAALRCLEVLQASDN-ALENVD---GV 504 (567)
T ss_dssp TCSEEECTTS-CCSSCC---CGGGGTTCCEEECCSSC-CCCC-CG-------GGGGCTTCCEEECCSS-CCCCCG---GG
T ss_pred CceEEEecCC-CCCCCc---CccccccCcEeecCccc-cccc-ch-------hhhcCCCCCEEECCCC-CCCCCc---cc
Confidence 3555665554 333332 14455566666655543 3322 11 1112555555555543 333333 12
Q ss_pred ccCCCcceeeeccCCCCeec--cCCCcCCCCccEEEeccCC
Q 045852 154 FKFPSLCDLSVSACPKMKIF--CGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 154 ~~~~~L~~L~i~~c~~l~~l--~~~~~~~~~L~~l~i~~c~ 192 (211)
..+++|+.|+++++ +++.+ |..+..+++|+.|++.+++
T Consensus 505 ~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 505 ANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp TTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 34455666666555 34443 4444555666666665543
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.06 E-value=1e-05 Score=71.67 Aligned_cols=115 Identities=15% Similarity=-0.002 Sum_probs=84.8
Q ss_pred CCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccc
Q 045852 67 PSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTT 146 (211)
Q Consensus 67 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 146 (211)
.....+++|+.|+++++. +..++. ....+++|++|+++++. +..+ .. ....+++|+.|+++++. ++.
T Consensus 218 ~~~~~l~~L~~L~Ls~n~-l~~l~~--~~~~l~~L~~L~Ls~N~-l~~l-p~-------~~~~l~~L~~L~Ls~N~-l~~ 284 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQ-IFNISA--NIFKYDFLTRLYLNGNS-LTEL-PA-------EIKNLSNLRVLDLSHNR-LTS 284 (727)
T ss_dssp ----CCCCCCEEECTTSC-CSCCCG--GGGGCCSCSCCBCTTSC-CSCC-CG-------GGGGGTTCCEEECTTSC-CSS
T ss_pred hhhccCCCCcEEECCCCC-CCCCCh--hhcCCCCCCEEEeeCCc-Cccc-Ch-------hhhCCCCCCEEeCcCCc-CCc
Confidence 456678999999999976 345543 34589999999999874 5444 21 12238899999999874 666
Q ss_pred cccCcccccCCCcceeeeccCCCCeeccCCCcCCCCccEEEeccCCCchhh
Q 045852 147 FCSANYTFKFPSLCDLSVSACPKMKIFCGGVFSAPRLKEVCLNDIEKLFYL 197 (211)
Q Consensus 147 ~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~l~i~~c~~l~~~ 197 (211)
++.. ...+++|++|+++++ .++.+|.++..+++|+.|++.++.-....
T Consensus 285 lp~~--~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 285 LPAE--LGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp CCSS--GGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHH
T ss_pred cChh--hcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCC
Confidence 6543 456799999999999 67889998888999999999998754333
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.03 E-value=2.4e-05 Score=56.61 Aligned_cols=120 Identities=16% Similarity=0.108 Sum_probs=78.8
Q ss_pred cEEEeccccccceecccccCcccccCccEEEEEcc-----CCchhhhcCCccEEecccCccccccCCC-CCCCCCccEEe
Q 045852 6 EELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQ-----NSKLNTVFQNLETLSAHFCLNLTNLMPS-SASFRCLTKLR 79 (211)
Q Consensus 6 e~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~-----~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~ 79 (211)
+.+++++. +++.+.. ..+++|++|++... +......+++|++|+++++ .++.+.+. ...+++|+.|+
T Consensus 10 ~~l~~~~~-~l~~~p~-----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 10 TEIRCNSK-GLTSVPT-----GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TEEECCSS-CCSSCCT-----TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEecCC-CCccCCC-----CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEE
Confidence 44555554 4544432 23578999987542 2334567889999999886 56666554 46789999999
Q ss_pred eccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccc
Q 045852 80 VWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQ 142 (211)
Q Consensus 80 l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 142 (211)
++++. ++.+++ .....+++|++|+++++. ++.+ ... .-..+++|+.|++.+.+
T Consensus 83 l~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~-~~~------~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 83 LHENK-LQSLPN-GVFDKLTQLKELALDTNQ-LKSV-PDG------IFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CSCC-CTT------TTTTCTTCCEEECCSSC
T ss_pred CCCCC-ccccCH-HHhhCCcccCEEECcCCc-ceEe-CHH------HhcCCcccCEEEecCCC
Confidence 99864 454432 234678999999998874 5544 210 01237889999998764
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.00 E-value=8.2e-05 Score=54.84 Aligned_cols=105 Identities=17% Similarity=0.092 Sum_probs=58.2
Q ss_pred CCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccccccccccCcc
Q 045852 73 RCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQSLTTFCSANY 152 (211)
Q Consensus 73 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 152 (211)
++|+.|++++.. ++.++. ....+++|++|+++++. ++.+ .. . .-..+++|+.|++++. .++.+... .
T Consensus 31 ~~l~~L~L~~n~-i~~ip~--~~~~l~~L~~L~Ls~N~-i~~i-~~---~---~f~~l~~L~~L~Ls~N-~l~~i~~~-~ 97 (193)
T 2wfh_A 31 RDVTELYLDGNQ-FTLVPK--ELSNYKHLTLIDLSNNR-ISTL-SN---Q---SFSNMTQLLTLILSYN-RLRCIPPR-T 97 (193)
T ss_dssp TTCCEEECCSSC-CCSCCG--GGGGCTTCCEEECCSSC-CCCC-CT---T---TTTTCTTCCEEECCSS-CCCBCCTT-T
T ss_pred CCCCEEECCCCc-CchhHH--HhhcccCCCEEECCCCc-CCEe-CH---h---HccCCCCCCEEECCCC-ccCEeCHH-H
Confidence 567777776643 333332 44567777777776653 3333 10 0 0112566777777664 34444432 2
Q ss_pred cccCCCcceeeeccCCCCeeccCC-CcCCCCccEEEeccC
Q 045852 153 TFKFPSLCDLSVSACPKMKIFCGG-VFSAPRLKEVCLNDI 191 (211)
Q Consensus 153 ~~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~l~i~~c 191 (211)
...+++|++|+++++ +++.++.+ +..+++|+.|++.+.
T Consensus 98 f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp TTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred hCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCC
Confidence 334577777777776 45555554 344677777777653
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.98 E-value=2.7e-05 Score=57.30 Aligned_cols=119 Identities=14% Similarity=0.103 Sum_probs=79.6
Q ss_pred cEEEeccccccceecccccCcccccCccEEEEEcc-----CC-chhhhcCCccEEecccCccccccC-CCCCCCCCccEE
Q 045852 6 EELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQ-----NS-KLNTVFQNLETLSAHFCLNLTNLM-PSSASFRCLTKL 78 (211)
Q Consensus 6 e~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~-----~~-~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L 78 (211)
+.+++++. +++.+... .+.++++|++... +. .....+++|++|++++. .++.+. ..+..+++|++|
T Consensus 11 ~~l~~s~~-~l~~ip~~-----~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRD-----IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTS-CCSSCCSC-----CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCC-CcCcCccC-----CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEE
Confidence 45666665 56555432 2458999987442 22 23578899999999886 566654 456788999999
Q ss_pred eeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeecccc
Q 045852 79 RVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRL 141 (211)
Q Consensus 79 ~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 141 (211)
++++.. ++.+.+. ....+++|++|++++.. +..+ ... .-..+++|+.|++.+.
T Consensus 84 ~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~-~~~------~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 84 QLGENK-IKEISNK-MFLGLHQLKTLNLYDNQ-ISCV-MPG------SFEHLNSLTSLNLASN 136 (192)
T ss_dssp ECCSCC-CCEECSS-SSTTCTTCCEEECCSSC-CCEE-CTT------SSTTCTTCCEEECTTC
T ss_pred ECCCCc-CCccCHH-HhcCCCCCCEEECCCCc-CCee-CHH------HhhcCCCCCEEEeCCC
Confidence 999864 5554431 34678999999998864 5555 211 1123788999998765
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.97 E-value=3.5e-05 Score=56.84 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=77.5
Q ss_pred EEEeccccccceecccccCcccccCccEEEEEccCC----chhhhcCCccEEecccCccccccCC-CCCCCCCccEEeec
Q 045852 7 ELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWEQNS----KLNTVFQNLETLSAHFCLNLTNLMP-SSASFRCLTKLRVW 81 (211)
Q Consensus 7 ~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~~~~----~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~ 81 (211)
.+++++. +++.+.. ..+++|++|++..... .....+++|++|++++. .++.+.+ ....+++|++|+++
T Consensus 14 ~l~~~~~-~l~~ip~-----~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 14 VVRCSNK-GLKVLPK-----GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp EEECTTS-CCSSCCS-----CCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred EEEcCCC-CCCcCCC-----CCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECC
Confidence 4555554 5555542 2356899998754221 34567889999999876 5666654 46678999999999
Q ss_pred cCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeecccc
Q 045852 82 ACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRL 141 (211)
Q Consensus 82 ~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 141 (211)
+.. ++.+.+. ....+++|++|++++.. +..+ ... .-..+++|+.|++.+-
T Consensus 87 ~N~-l~~i~~~-~f~~l~~L~~L~L~~N~-l~~~-~~~------~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 87 YNR-LRCIPPR-TFDGLKSLRLLSLHGND-ISVV-PEG------AFNDLSALSHLAIGAN 136 (193)
T ss_dssp SSC-CCBCCTT-TTTTCTTCCEEECCSSC-CCBC-CTT------TTTTCTTCCEEECCSS
T ss_pred CCc-cCEeCHH-HhCCCCCCCEEECCCCC-CCee-Chh------hhhcCccccEEEeCCC
Confidence 864 5555432 35688999999998864 5444 210 0123678899988764
No 136
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.90 E-value=3.2e-05 Score=62.90 Aligned_cols=159 Identities=15% Similarity=0.133 Sum_probs=87.7
Q ss_pred CCCccEEEeccccccce--e-cc--ccc--CcccccCccEEEEEccC-Cch-hhhcCCccEEecccCccccc-cCCC--C
Q 045852 2 LPNLEELRLSKNKDIAK--I-WQ--GPF--TDHLLNKLEHLWLWEQN-SKL-NTVFQNLETLSAHFCLNLTN-LMPS--S 69 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~--i-~~--~~~--~~~~~~~Lk~L~l~~~~-~~~-~~~l~~L~~L~l~~c~~l~~-l~~~--~ 69 (211)
|++|+.|.+.+. ..+. + |. +.. ....+|+|+.|++.... ... ....++|+.|.+..|. +.. .... .
T Consensus 138 l~~L~~L~l~~~-~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~-l~~~~l~~l~~ 215 (362)
T 2ra8_A 138 FAHFEGLFWGDI-DFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGG-LPDSVVEDILG 215 (362)
T ss_dssp HTTCSEEEECCC-CTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSB-CCHHHHHHHHH
T ss_pred cchhhheeecCc-chhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCC-CChHHHHHHHH
Confidence 578999998654 1111 1 10 101 11357899999985431 111 1236889999997664 321 1111 1
Q ss_pred CCCCCccEEeeccCc-------cchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccccc
Q 045852 70 ASFRCLTKLRVWACE-------HLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQ 142 (211)
Q Consensus 70 ~~l~~L~~L~l~~c~-------~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 142 (211)
..+|+|+.|+++.+. .++.+.+......+|+|++|++.+|.-.... .. ... ....+|+|+.|+++.+
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~-~~-~la---~a~~~~~L~~LdLs~n- 289 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV-VE-MFL---ESDILPQLETMDISAG- 289 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHH-HH-HHH---HCSSGGGCSEEECCSS-
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHH-HH-HHH---hCccCCCCCEEECCCC-
Confidence 268999999986321 1222221111246899999999887622111 00 000 1124789999999654
Q ss_pred cccccccC---cccccCCCcceeeeccCC
Q 045852 143 SLTTFCSA---NYTFKFPSLCDLSVSACP 168 (211)
Q Consensus 143 ~l~~~~~~---~~~~~~~~L~~L~i~~c~ 168 (211)
.+.+.... .....+++|+.|++++|.
T Consensus 290 ~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 290 VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 45542110 011356899999998884
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.89 E-value=7.3e-05 Score=59.63 Aligned_cols=55 Identities=18% Similarity=0.113 Sum_probs=34.7
Q ss_pred CCccceeeccccccccccccCcccccCCCcc-eeeeccCCCCeeccCC-CcCCCCccEEEec
Q 045852 130 FPKLGYLELHRLQSLTTFCSANYTFKFPSLC-DLSVSACPKMKIFCGG-VFSAPRLKEVCLN 189 (211)
Q Consensus 130 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~-~L~i~~c~~l~~l~~~-~~~~~~L~~l~i~ 189 (211)
+++|+.+.+.+ +++.+..+ .+..|++|+ .+.+.+ +++.++.+ +..+++|+.+++.
T Consensus 249 ~~~L~~l~l~~--ni~~I~~~-aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 249 KKYLLKIKLPH--NLKTIGQR-VFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp CTTCCEEECCT--TCCEECTT-TTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEEC
T ss_pred CCCCCEEECCc--ccceehHH-HhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeC
Confidence 34666766654 35555543 345677787 888877 66666644 3446788888774
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.80 E-value=3.9e-06 Score=62.14 Aligned_cols=104 Identities=23% Similarity=0.140 Sum_probs=71.8
Q ss_pred ccccCccEEEEEccC---CchhhhcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcE
Q 045852 27 HLLNKLEHLWLWEQN---SKLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVH 103 (211)
Q Consensus 27 ~~~~~Lk~L~l~~~~---~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 103 (211)
..+++|++|++.... ......+++|++|+++++ .++.++.....+++|+.|+++++ .++.++ ....+++|++
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~---~~~~l~~L~~ 119 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKISSLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS---GIEKLVNLRV 119 (198)
T ss_dssp HHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH---HHHHHHHSSE
T ss_pred hcCCCCCEEECCCCCCccccccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC---ccccCCCCCE
Confidence 468899999873211 125678899999999887 56666544445689999999987 455543 4678999999
Q ss_pred EEEeecCCCcEEeccccCCCCCCccCCCccceeeccccc
Q 045852 104 VSVSECSKITELVVASEGDAANDEIIFPKLGYLELHRLQ 142 (211)
Q Consensus 104 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 142 (211)
|+++++. +..+ ... . ....+++|+.|++.+++
T Consensus 120 L~l~~N~-i~~~-~~~--~---~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 120 LYMSNNK-ITNW-GEI--D---KLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEESEEE-CCCH-HHH--H---HHTTTTTCSEEEECSCH
T ss_pred EECCCCc-CCch-hHH--H---HHhcCCCCCEEEecCCc
Confidence 9999874 3332 100 0 11238899999998874
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.72 E-value=0.00035 Score=55.60 Aligned_cols=98 Identities=12% Similarity=0.093 Sum_probs=59.6
Q ss_pred CCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccC---CCccc-eeecccccccccc
Q 045852 72 FRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEII---FPKLG-YLELHRLQSLTTF 147 (211)
Q Consensus 72 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~---~~~L~-~L~l~~c~~l~~~ 147 (211)
+++|+.+++.++. ++.++. .....+++|+.+++.+ +++.+ +..+ +++|+ .+.+.+ .++.+
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~-~aF~~~~~L~~l~l~~--ni~~I----------~~~aF~~~~~L~~~l~l~~--~l~~I 288 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPD-FTFAQKKYLLKIKLPH--NLKTI----------GQRVFSNCGRLAGTLELPA--SVTAI 288 (329)
T ss_dssp CTTCCEEECTTBC-CCEECT-TTTTTCTTCCEEECCT--TCCEE----------CTTTTTTCTTCCEEEEECT--TCCEE
T ss_pred cCCCeEEECCCCC-cceecH-hhhhCCCCCCEEECCc--cccee----------hHHHhhCChhccEEEEEcc--cceEE
Confidence 5666666666532 344332 1235667777776655 35555 2223 45576 777765 66666
Q ss_pred ccCcccccCCCcceeeeccCCCCeeccCCC-cCCCCccEEE
Q 045852 148 CSANYTFKFPSLCDLSVSACPKMKIFCGGV-FSAPRLKEVC 187 (211)
Q Consensus 148 ~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~-~~~~~L~~l~ 187 (211)
..+ .+..|++|+.+++.+. +++.++.+. ..+++|+.|+
T Consensus 289 ~~~-aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 289 EFG-AFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CTT-TTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred chh-hhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 554 4567899999998655 566676643 3467787775
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.68 E-value=7.3e-05 Score=64.33 Aligned_cols=121 Identities=18% Similarity=0.119 Sum_probs=86.1
Q ss_pred CccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccC
Q 045852 50 NLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEII 129 (211)
Q Consensus 50 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~ 129 (211)
.|+.|+++++ .++.++ .+..+++|+.|+++++. ++.++. .++.+++|+.|+++++. ++.+ . ....
T Consensus 442 ~L~~L~Ls~n-~l~~lp-~~~~l~~L~~L~Ls~N~-l~~lp~--~~~~l~~L~~L~Ls~N~-l~~l-p--------~l~~ 506 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLC-HLEQLLLVTHLDLSHNR-LRALPP--ALAALRCLEVLQASDNA-LENV-D--------GVAN 506 (567)
T ss_dssp TCSEEECTTS-CCSSCC-CGGGGTTCCEEECCSSC-CCCCCG--GGGGCTTCCEEECCSSC-CCCC-G--------GGTT
T ss_pred CceEEEecCC-CCCCCc-CccccccCcEeecCccc-ccccch--hhhcCCCCCEEECCCCC-CCCC-c--------ccCC
Confidence 6888999876 677664 48889999999999874 555543 56799999999999864 4444 1 1233
Q ss_pred CCccceeeccccccccccccCcccccCCCcceeeeccCCCCeeccCCCc----CCCCccEEE
Q 045852 130 FPKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACPKMKIFCGGVF----SAPRLKEVC 187 (211)
Q Consensus 130 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~----~~~~L~~l~ 187 (211)
+++|+.|+++++ .++++........+++|+.|++++++ ++.+|.... .+|+|+.|+
T Consensus 507 l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 507 LPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 889999999886 56665311134568999999999985 555554332 257888774
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.64 E-value=0.00017 Score=52.02 Aligned_cols=94 Identities=20% Similarity=0.238 Sum_probs=42.3
Q ss_pred cEEEeccccccceecccccCcccccCccEEEEEc-----cCCchhhhcCCccEEecccCccccccCCCC-CCCCCccEEe
Q 045852 6 EELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWE-----QNSKLNTVFQNLETLSAHFCLNLTNLMPSS-ASFRCLTKLR 79 (211)
Q Consensus 6 e~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~-----~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~ 79 (211)
+.+++++. +++.+... .+++|++|++.. .+......+++|++|++++. +++.+++.. ..+++|++|+
T Consensus 12 ~~l~~s~n-~l~~ip~~-----~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 12 TTVDCSGK-SLASVPTG-----IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp TEEECTTS-CCSSCCSC-----CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEeCCC-CcCccCcc-----CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEE
Confidence 45555554 44444321 135566655432 11222344555555555543 344444332 3455555555
Q ss_pred eccCccchhccchHHHhccCCCcEEEEee
Q 045852 80 VWACEHLINLVASSAAKNLVQLVHVSVSE 108 (211)
Q Consensus 80 l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 108 (211)
+++. .++.+.+ .....+++|++|++++
T Consensus 85 L~~N-~l~~~~~-~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 85 LNDN-QLKSIPR-GAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CCSS-CCCCCCT-TTTTTCTTCCEEECCS
T ss_pred CCCC-ccCEeCH-HHhcCCCCCCEEEeCC
Confidence 5553 2333321 1233455555555543
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.63 E-value=0.0022 Score=52.74 Aligned_cols=58 Identities=14% Similarity=0.078 Sum_probs=26.9
Q ss_pred hhhcCCccEEecccCccccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEe
Q 045852 45 NTVFQNLETLSAHFCLNLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVS 107 (211)
Q Consensus 45 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~ 107 (211)
...+++|+.+.+.. +++.+......-.+|+.+.+.+ .++.+.. .....+++|+.+++.
T Consensus 222 F~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~--~i~~I~~-~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 222 FLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLPN--GVTNIAS-RAFYYCPELAEVTTY 279 (401)
T ss_dssp TTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEET--TCCEECT-TTTTTCTTCCEEEEE
T ss_pred hhCCCCCCEEecCC--CccCccccccccCCccEEEeCC--CccEECh-hHhhCCCCCCEEEeC
Confidence 34455555555543 3444433333335566665532 2333321 123456666666654
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.62 E-value=0.0002 Score=51.79 Aligned_cols=36 Identities=22% Similarity=0.188 Sum_probs=15.2
Q ss_pred hhcCCccEEecccCccccccCCCC-CCCCCccEEeecc
Q 045852 46 TVFQNLETLSAHFCLNLTNLMPSS-ASFRCLTKLRVWA 82 (211)
Q Consensus 46 ~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~ 82 (211)
..+++|++|++++. +++.+++.. ..+++|+.|++++
T Consensus 54 ~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 54 DHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 34444444444443 333333322 3344444444444
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.49 E-value=0.00037 Score=50.39 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=59.0
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEc-----cCCchhhhcCCccEEecccCccccccCCC-CCCCCCc
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWE-----QNSKLNTVFQNLETLSAHFCLNLTNLMPS-SASFRCL 75 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~-----~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L 75 (211)
.++|+.|+++++ +++.+.... ...+++|++|++.. .+......+++|++|++++. .++.+++. ...+++|
T Consensus 32 ~~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L 107 (174)
T 2r9u_A 32 PTDKQRLWLNNN-QITKLEPGV--FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSL 107 (174)
T ss_dssp CTTCSEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCCCcEEEeCCC-CccccCHHH--hcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCC
Confidence 367899999988 777764322 24688999999854 33334567899999999875 67777654 6679999
Q ss_pred cEEeeccCc
Q 045852 76 TKLRVWACE 84 (211)
Q Consensus 76 ~~L~l~~c~ 84 (211)
+.|++++.+
T Consensus 108 ~~L~L~~N~ 116 (174)
T 2r9u_A 108 THIYLYNNP 116 (174)
T ss_dssp SEEECCSSC
T ss_pred CEEEeCCCC
Confidence 999998764
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.45 E-value=0.00056 Score=54.69 Aligned_cols=94 Identities=21% Similarity=0.196 Sum_probs=49.3
Q ss_pred cccccCCCCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCCCCCccCCCccceeeccc
Q 045852 61 NLTNLMPSSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDAANDEIIFPKLGYLELHR 140 (211)
Q Consensus 61 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 140 (211)
+++.++. +..+++|+.|++++...++.+.+. ....+++|+.|++++. ++..+ .... -..+++|+.|++++
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~-~~~~------~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKS-GLRFV-APDA------FHFTPRLSRLNLSF 89 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSS-CCCEE-CTTG------GGSCSCCCEEECCS
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChh-HhccccCCCEEECCCC-cccee-CHHH------hcCCcCCCEEeCCC
Confidence 4555555 666667777777765556655421 2456777777777665 35555 2100 01255666666665
Q ss_pred cccccccccCcccccCCCcceeeeccC
Q 045852 141 LQSLTTFCSANYTFKFPSLCDLSVSAC 167 (211)
Q Consensus 141 c~~l~~~~~~~~~~~~~~L~~L~i~~c 167 (211)
. .|+.++.. .+....|+.|.+.+.
T Consensus 90 N-~l~~~~~~--~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 90 N-ALESLSWK--TVQGLSLQELVLSGN 113 (347)
T ss_dssp S-CCSCCCST--TTCSCCCCEEECCSS
T ss_pred C-ccceeCHH--HcccCCceEEEeeCC
Confidence 3 44444432 111122666665554
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.37 E-value=0.00064 Score=48.86 Aligned_cols=79 Identities=20% Similarity=0.154 Sum_probs=59.6
Q ss_pred CCCccEEEeccccccceecccccCcccccCccEEEEEc-----cCCchhhhcCCccEEecccCccccccCCC-CCCCCCc
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWE-----QNSKLNTVFQNLETLSAHFCLNLTNLMPS-SASFRCL 75 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~-----~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L 75 (211)
.++|+.|+++++ +++.+.... ...+++|++|++.. .+......+++|++|++++. +++.+.+. ...+++|
T Consensus 29 ~~~l~~L~L~~N-~i~~~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 104 (170)
T 3g39_A 29 PTTTQVLYLYDN-QITKLEPGV--FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSL 104 (170)
T ss_dssp CTTCSEEECCSS-CCCCCCTTT--TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCCCcEEEcCCC-cCCccChhh--hcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCC
Confidence 467999999998 787775332 24588999999754 33334578899999999875 67777654 6689999
Q ss_pred cEEeeccCc
Q 045852 76 TKLRVWACE 84 (211)
Q Consensus 76 ~~L~l~~c~ 84 (211)
+.|++++.+
T Consensus 105 ~~L~L~~N~ 113 (170)
T 3g39_A 105 THIWLLNNP 113 (170)
T ss_dssp CEEECCSSC
T ss_pred CEEEeCCCC
Confidence 999998754
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.36 E-value=2.2e-05 Score=64.01 Aligned_cols=157 Identities=16% Similarity=0.057 Sum_probs=87.0
Q ss_pred CCCccEEEeccccccceecccccCc---ccccCccEEEEEccCCc------hhhhcCCccEEecccCccccccC-----C
Q 045852 2 LPNLEELRLSKNKDIAKIWQGPFTD---HLLNKLEHLWLWEQNSK------LNTVFQNLETLSAHFCLNLTNLM-----P 67 (211)
Q Consensus 2 l~~Le~L~l~~~~~l~~i~~~~~~~---~~~~~Lk~L~l~~~~~~------~~~~l~~L~~L~l~~c~~l~~l~-----~ 67 (211)
+++|+.|++++| ++.......+.. ....+|++|++...... ....+++|++|++++| .+++.. .
T Consensus 71 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHH
T ss_pred HhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHH
Confidence 357888888888 555432211111 12368888887554332 1235678888888887 343221 1
Q ss_pred CC-CCCCCccEEeeccCccchhccch---HHHhccCCCcEEEEeecCCCcEEeccccCCC--CCCccCCCccceeecccc
Q 045852 68 SS-ASFRCLTKLRVWACEHLINLVAS---SAAKNLVQLVHVSVSECSKITELVVASEGDA--ANDEIIFPKLGYLELHRL 141 (211)
Q Consensus 68 ~~-~~l~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~c 141 (211)
.+ ...++|++|++++|. +.+.... ......++|++|+++++. +... +.. ...-...++|+.|+++++
T Consensus 149 ~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~-----g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDE-----GLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHH-----HHHHHHHHGGGCSCCCEEECCSS
T ss_pred HHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcH-----HHHHHHHHHhcCCCcCeEECCCC
Confidence 11 235788888888874 4442211 123567888888888775 3221 100 000112457888888876
Q ss_pred ccccccccCc---ccccCCCcceeeeccCC
Q 045852 142 QSLTTFCSAN---YTFKFPSLCDLSVSACP 168 (211)
Q Consensus 142 ~~l~~~~~~~---~~~~~~~L~~L~i~~c~ 168 (211)
.+++..... .....++|++|++++++
T Consensus 222 -~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 222 -GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp -CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred -CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 333321110 11245788888888885
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.22 E-value=0.0074 Score=49.54 Aligned_cols=35 Identities=11% Similarity=0.362 Sum_probs=20.4
Q ss_pred cccCCCcceeeeccCCCCeeccCCCc-CCCCccEEEec
Q 045852 153 TFKFPSLCDLSVSACPKMKIFCGGVF-SAPRLKEVCLN 189 (211)
Q Consensus 153 ~~~~~~L~~L~i~~c~~l~~l~~~~~-~~~~L~~l~i~ 189 (211)
+..|++|+.+.+.+ +++.++.+.. .+.+|+.+.+.
T Consensus 296 F~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 296 LEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp TTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEEC
T ss_pred hhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEEC
Confidence 34556666666652 4555555432 34778888774
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.19 E-value=0.0016 Score=52.04 Aligned_cols=86 Identities=17% Similarity=0.020 Sum_probs=60.9
Q ss_pred hhhcCCccEEecccCccccccCC-CCCCCCCccEEeeccCccchhccchHHHhccCCCcEEEEeecCCCcEEeccccCCC
Q 045852 45 NTVFQNLETLSAHFCLNLTNLMP-SSASFRCLTKLRVWACEHLINLVASSAAKNLVQLVHVSVSECSKITELVVASEGDA 123 (211)
Q Consensus 45 ~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 123 (211)
...+++|++|++++...++.+.+ .+..+++|+.|++++. .++.+.+. ....+++|+.|++++. ++..+ ...
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~-~~~---- 98 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFN-ALESL-SWK---- 98 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSS-CCSCC-CST----
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHH-HhcCCcCCCEEeCCCC-cccee-CHH----
Confidence 45677899999987678888764 4678999999999986 56666532 3578999999999875 35554 211
Q ss_pred CCCccCCCccceeecccc
Q 045852 124 ANDEIIFPKLGYLELHRL 141 (211)
Q Consensus 124 ~~~~~~~~~L~~L~l~~c 141 (211)
......|+.|.+.+.
T Consensus 99 ---~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 99 ---TVQGLSLQELVLSGN 113 (347)
T ss_dssp ---TTCSCCCCEEECCSS
T ss_pred ---HcccCCceEEEeeCC
Confidence 111223888888754
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.57 E-value=0.00011 Score=59.93 Aligned_cols=155 Identities=17% Similarity=0.050 Sum_probs=85.9
Q ss_pred cccCccEEEEEccCCc-----hhh-----hcCCccEEecccCccccccC--CCCCCCCCccEEeeccCccchhccchHHH
Q 045852 28 LLNKLEHLWLWEQNSK-----LNT-----VFQNLETLSAHFCLNLTNLM--PSSASFRCLTKLRVWACEHLINLVASSAA 95 (211)
Q Consensus 28 ~~~~Lk~L~l~~~~~~-----~~~-----~l~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 95 (211)
..++|++|++...... ... ..++|++|++++|. +.+.. .-...+++|++|++++|. +.+.......
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~ 147 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLR 147 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHH
Confidence 3567888887543322 111 22578888888773 33211 112235678888888873 4433222222
Q ss_pred ----hccCCCcEEEEeecCCCcEEeccccCCCC--CCccCCCccceeeccccccccccccC---cccccCCCcceeeecc
Q 045852 96 ----KNLVQLVHVSVSECSKITELVVASEGDAA--NDEIIFPKLGYLELHRLQSLTTFCSA---NYTFKFPSLCDLSVSA 166 (211)
Q Consensus 96 ----~~l~~L~~L~i~~c~~l~~~~~~~~~~~~--~~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~~~~L~~L~i~~ 166 (211)
...++|++|++++|. +... +... ......++|+.|+++++. +.+.... ......++|++|++++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~-l~~~-----~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNP-LTAA-----GVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HHHHSTTCCCCEEECCSSC-CHHH-----HHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred HHHHhcCCccceeeCCCCC-CChH-----HHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 235778888888875 3221 1000 000236778999988774 3332110 0122457899999999
Q ss_pred CCCCee-----ccCCCcCCCCccEEEeccCC
Q 045852 167 CPKMKI-----FCGGVFSAPRLKEVCLNDIE 192 (211)
Q Consensus 167 c~~l~~-----l~~~~~~~~~L~~l~i~~c~ 192 (211)
|. +.. +.......++|++|++.+++
T Consensus 221 N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 221 NG-AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp SC-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CC-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 84 332 22222345889999998885
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.88 E-value=0.015 Score=42.23 Aligned_cols=77 Identities=14% Similarity=-0.031 Sum_probs=40.2
Q ss_pred cccCccEEEEEcc-CCc---------hhhhcCCccEEecccCccccc-----cCCCCCCCCCccEEeeccCccchhccch
Q 045852 28 LLNKLEHLWLWEQ-NSK---------LNTVFQNLETLSAHFCLNLTN-----LMPSSASFRCLTKLRVWACEHLINLVAS 92 (211)
Q Consensus 28 ~~~~Lk~L~l~~~-~~~---------~~~~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~~~~~ 92 (211)
..+.|++|++... ... .....++|++|+++++. +.+ +...+...++|++|+++++. +.+....
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~ 111 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGIL 111 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHH
Confidence 3566777777543 221 11234667777777663 322 11222344677778777763 3332211
Q ss_pred ---HHHhccCCCcEEEE
Q 045852 93 ---SAAKNLVQLVHVSV 106 (211)
Q Consensus 93 ---~~~~~l~~L~~L~i 106 (211)
......++|++|++
T Consensus 112 ~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 112 ALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHhCCCceEEEe
Confidence 12344567777777
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.54 E-value=0.022 Score=44.08 Aligned_cols=77 Identities=14% Similarity=0.047 Sum_probs=47.6
Q ss_pred cccCccEEEEEccCC-------chhhhcCCccEEecccCccccccCCCCCCCC--CccEEeeccCccchhcc-----chH
Q 045852 28 LLNKLEHLWLWEQNS-------KLNTVFQNLETLSAHFCLNLTNLMPSSASFR--CLTKLRVWACEHLINLV-----ASS 93 (211)
Q Consensus 28 ~~~~Lk~L~l~~~~~-------~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~--~L~~L~l~~c~~l~~~~-----~~~ 93 (211)
.+++|++|++..... .....+++|+.|++++- +++.+ ..+..+. +|++|++++.+--...+ ...
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 577888888743221 22357889999998763 44443 2223333 89999998876432211 123
Q ss_pred HHhccCCCcEEEE
Q 045852 94 AAKNLVQLVHVSV 106 (211)
Q Consensus 94 ~~~~l~~L~~L~i 106 (211)
....+|+|+.|+=
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 5678999998853
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.26 E-value=1.4 Score=35.43 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=18.9
Q ss_pred ccCCCcceeeeccCCCCeeccCCC-cCCCCccEEEecc
Q 045852 154 FKFPSLCDLSVSACPKMKIFCGGV-FSAPRLKEVCLND 190 (211)
Q Consensus 154 ~~~~~L~~L~i~~c~~l~~l~~~~-~~~~~L~~l~i~~ 190 (211)
..|.+|+.+.+.+ +++.+..+. ..+++|+.+.+.+
T Consensus 340 ~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 340 RGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred cCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 3456666666532 244444432 3457777777743
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=92.95 E-value=0.017 Score=41.92 Aligned_cols=63 Identities=14% Similarity=0.035 Sum_probs=29.6
Q ss_pred hcCCccEEecccCccccc-----cCCCCCCCCCccEEeeccCccchhccch---HHHhccCCCcEEEEeecC
Q 045852 47 VFQNLETLSAHFCLNLTN-----LMPSSASFRCLTKLRVWACEHLINLVAS---SAAKNLVQLVHVSVSECS 110 (211)
Q Consensus 47 ~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~i~~c~ 110 (211)
..++|++|++++|..+.+ +...+...++|++|++++|. +.+.... ..+...++|++|+++++.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 455666666666533322 12223334566666666654 2222111 122334556666665543
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=92.04 E-value=0.16 Score=39.24 Aligned_cols=88 Identities=17% Similarity=0.095 Sum_probs=52.0
Q ss_pred hhcCCccEEecccCccccccC---CCCCCCCCccEEeeccCccchhccchHHHhccC--CCcEEEEeecCCCcEEecccc
Q 045852 46 TVFQNLETLSAHFCLNLTNLM---PSSASFRCLTKLRVWACEHLINLVASSAAKNLV--QLVHVSVSECSKITELVVASE 120 (211)
Q Consensus 46 ~~l~~L~~L~l~~c~~l~~l~---~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~--~L~~L~i~~c~~l~~~~~~~~ 120 (211)
..+++|++|++++- ++..+. .....+++|+.|++++. .++.+. ....+. +|++|++.+.+ +..- +...
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~---~l~~l~~l~L~~L~L~~Np-l~~~-~~~~ 239 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER---ELDKIKGLKLEELWLDGNS-LCDT-FRDQ 239 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG---GGGGGTTSCCSEEECTTST-TGGG-CSSH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCch---hhhhcccCCcceEEccCCc-Cccc-cCcc
Confidence 46899999999874 455442 23347999999999874 344442 223333 89999998766 2210 0000
Q ss_pred CCC-CCCccCCCccceeeccc
Q 045852 121 GDA-ANDEIIFPKLGYLELHR 140 (211)
Q Consensus 121 ~~~-~~~~~~~~~L~~L~l~~ 140 (211)
... ..-...||+|+.|+=..
T Consensus 240 ~~y~~~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 240 STYISAIRERFPKLLRLDGHE 260 (267)
T ss_dssp HHHHHHHHHHCTTCCEESSCB
T ss_pred hhHHHHHHHHCcccCeECCcC
Confidence 000 00023489998886543
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=87.01 E-value=10 Score=30.27 Aligned_cols=29 Identities=14% Similarity=0.032 Sum_probs=14.7
Q ss_pred ccCccEEEEE----ccCCchhhhcCCccEEecc
Q 045852 29 LNKLEHLWLW----EQNSKLNTVFQNLETLSAH 57 (211)
Q Consensus 29 ~~~Lk~L~l~----~~~~~~~~~l~~L~~L~l~ 57 (211)
+.+|+.+.+- ..+......+.+|+.+.+.
T Consensus 70 c~~L~~i~lp~~i~~I~~~aF~~c~~L~~i~lp 102 (394)
T 4fs7_A 70 CRKVTEIKIPSTVREIGEFAFENCSKLEIINIP 102 (394)
T ss_dssp CTTEEEEECCTTCCEECTTTTTTCTTCCEECCC
T ss_pred CCCceEEEeCCCccCcchhHhhCCCCCcEEEeC
Confidence 4556665542 1233344455666666663
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=81.85 E-value=9.2 Score=30.57 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=60.1
Q ss_pred cccCccEEEEEc----cCCchhhhcCCccEEecccCccccccCCC-CCCCCCccEEeeccCccchhccchHHHhccCCCc
Q 045852 28 LLNKLEHLWLWE----QNSKLNTVFQNLETLSAHFCLNLTNLMPS-SASFRCLTKLRVWACEHLINLVASSAAKNLVQLV 102 (211)
Q Consensus 28 ~~~~Lk~L~l~~----~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 102 (211)
.+.+|+.+.+-+ .+......+++|+.+.+. ..++.+... ...+.+|+.+.+.. .++.+... ....+.+|+
T Consensus 263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~-aF~~C~~L~ 337 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS--SRITELPESVFAGCISLKSIDIPE--GITQILDD-AFAGCEQLE 337 (394)
T ss_dssp TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTT-TTTTCTTCC
T ss_pred ecccccEEecccccceecCcccccccccccccCC--CcccccCceeecCCCCcCEEEeCC--cccEehHh-HhhCCCCCC
Confidence 456788877632 333445667888888885 346666543 34578999998864 34444321 235778888
Q ss_pred EEEEeecCCCcEEeccccCCCCCCccC---CCccceeecccc
Q 045852 103 HVSVSECSKITELVVASEGDAANDEII---FPKLGYLELHRL 141 (211)
Q Consensus 103 ~L~i~~c~~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~c 141 (211)
.+.+.. +++.+ +..+ +.+|+.+.+.+-
T Consensus 338 ~i~ip~--sv~~I----------~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 338 RIAIPS--SVTKI----------PESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EEEECT--TCCBC----------CGGGGTTCTTCCEEEESSC
T ss_pred EEEECc--ccCEE----------hHhHhhCCCCCCEEEECCc
Confidence 888742 35555 2222 467888887653
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=79.73 E-value=12 Score=29.48 Aligned_cols=102 Identities=16% Similarity=0.160 Sum_probs=57.8
Q ss_pred CccEEEeccccccceecccccCcccccCccEEEEEc----cCCchhhhcCCccEEecccCccccccCC-CCCCCCCccEE
Q 045852 4 NLEELRLSKNKDIAKIWQGPFTDHLLNKLEHLWLWE----QNSKLNTVFQNLETLSAHFCLNLTNLMP-SSASFRCLTKL 78 (211)
Q Consensus 4 ~Le~L~l~~~~~l~~i~~~~~~~~~~~~Lk~L~l~~----~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L 78 (211)
+|+.+.+.. +++.+.... ...+.+|+.+.+-. .+......+.+|+.+.+.. +++.+.. ....+++|+.+
T Consensus 218 ~l~~i~~~~--~~~~i~~~~--f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 218 NLKKITITS--GVTTLGDGA--FYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp SCSEEECCT--TCCEECTTT--TTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEE
T ss_pred ccceeeecc--ceeEEcccc--ccCCccceEEEcCCCccEeCccccceeehhccccccc--cceeccccccccccccccc
Confidence 455555543 244443321 12456788877632 2333445677888888743 4555543 34467899999
Q ss_pred eeccCccchhccchHHHhccCCCcEEEEeecCCCcEE
Q 045852 79 RVWACEHLINLVASSAAKNLVQLVHVSVSECSKITEL 115 (211)
Q Consensus 79 ~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~ 115 (211)
.+.+. .++.+... ...++.+|+.+.+. .+++.+
T Consensus 292 ~l~~~-~i~~I~~~-aF~~c~~L~~i~lp--~~l~~I 324 (379)
T 4h09_A 292 VMDNS-AIETLEPR-VFMDCVKLSSVTLP--TALKTI 324 (379)
T ss_dssp EECCT-TCCEECTT-TTTTCTTCCEEECC--TTCCEE
T ss_pred ccccc-ccceehhh-hhcCCCCCCEEEcC--ccccEE
Confidence 88653 23333321 23567888888774 246666
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=73.40 E-value=23 Score=27.92 Aligned_cols=31 Identities=23% Similarity=0.133 Sum_probs=14.2
Q ss_pred CccceeeccccccccccccCcccccCCCcceeee
Q 045852 131 PKLGYLELHRLQSLTTFCSANYTFKFPSLCDLSV 164 (211)
Q Consensus 131 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i 164 (211)
.+|+.+.+.+ +++.+... .+..|++|+.+.+
T Consensus 310 ~~L~~i~lp~--~l~~I~~~-aF~~C~~L~~i~i 340 (379)
T 4h09_A 310 VKLSSVTLPT--ALKTIQVY-AFKNCKALSTISY 340 (379)
T ss_dssp TTCCEEECCT--TCCEECTT-TTTTCTTCCCCCC
T ss_pred CCCCEEEcCc--cccEEHHH-HhhCCCCCCEEEE
Confidence 4455555531 24444332 2334555666555
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=69.57 E-value=29 Score=27.56 Aligned_cols=10 Identities=20% Similarity=0.371 Sum_probs=4.8
Q ss_pred CCCCccEEee
Q 045852 71 SFRCLTKLRV 80 (211)
Q Consensus 71 ~l~~L~~L~l 80 (211)
.+.+|+.+.+
T Consensus 263 ~c~~L~~i~l 272 (394)
T 4gt6_A 263 SCAYLASVKM 272 (394)
T ss_dssp TCSSCCEEEC
T ss_pred ecccccEEec
Confidence 3445555544
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=45.54 E-value=19 Score=23.96 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=18.4
Q ss_pred ccceeeccccccccccccCcccccCCCcceeeeccCC
Q 045852 132 KLGYLELHRLQSLTTFCSANYTFKFPSLCDLSVSACP 168 (211)
Q Consensus 132 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 168 (211)
+|+.|++++- .++.+..+ .+..+++|+.|++.+.|
T Consensus 32 ~l~~L~Ls~N-~l~~l~~~-~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGN-NLTALPPG-LLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTS-CCSSCCTT-TGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCC-cCCccChh-hhhhccccCEEEecCCC
Confidence 5666666543 34554443 23345666666665544
Done!