BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045853
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana
GN=ATL53 PE=3 SV=2
Length = 310
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 67/148 (45%), Gaps = 9/148 (6%)
Query: 23 TPLVISSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLSSQQQQQQRVIINSTEYK 82
+PLVI+ +YY Y + T E G S + +NS E
Sbjct: 59 SPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASESGRS-----DIILDVNSPERG 113
Query: 83 VKEDPRA--SKFKKVSWTAFKR-DIINNKSHQNDDAVNKTSTCVICLEEFRDGDECKVRS 139
++DP A S + T K+ K HQN +N T C ICL EF + + ++
Sbjct: 114 DQDDPFALESSTAGLDDTLIKKIGFFKLKKHQNGFKINGTD-CSICLGEFNEDESLRLLP 172
Query: 140 KCNHIFHQTCMDDWLDDHSTCPLCRGRV 167
KCNH FH C+D WL HS CPLCR ++
Sbjct: 173 KCNHTFHVVCIDRWLKSHSNCPLCRAKI 200
>sp|Q7XLY8|ATL41_ORYSJ E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp.
japonica GN=Os04g0590900 PE=2 SV=2
Length = 383
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 12/166 (7%)
Query: 23 TPLVISSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLSSQQQQQQRVIINSTEYK 82
+PLVI+ + L +SYY F Y + + + S
Sbjct: 56 SPLVIAIIGVLASAFLLVSYYTFISKYCGTVSSLRGRVFGSSSGGAAYGGGAGSGGRHGH 115
Query: 83 VKEDPRASKFKKVSWTAFKRDIINNK----SHQNDDAVNKTSTCVICLEEFRDGDECKVR 138
+ R+ + VS + + + NK ++ D T+ C +CL EF DG+ ++
Sbjct: 116 GQS--RSHESWNVSPPSGLDETLINKITVCKYRRGDGFVHTTDCSVCLGEFSDGESLRLL 173
Query: 139 SKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAWPSFTTADDWSPD 184
+C+H FHQ C+D WL HS CPLCR + +F T SP+
Sbjct: 174 PRCSHAFHQQCIDTWLKSHSNCPLCRANI------TFVTVGLASPE 213
>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2
SV=2
Length = 413
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 17/154 (11%)
Query: 25 LVISSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLSSQQQQQQRVIINSTEYKVK 84
+ I ++ +L + ++L + +S + NQ + Q + + E++ +
Sbjct: 83 ISIITITGAVLAILLTGFFLVAKFFSDSVNRVNQG-----TYQSDNEDNDTVMEEEFQDR 137
Query: 85 EDPRASKFKKVSW----TAFKRDIINNKS---HQNDDAVNKTSTCVICLEEFRDGDECKV 137
E + W T ++ IIN+ + ++ D + + + C +CL EF + + ++
Sbjct: 138 E-----QVDHPIWLIRTTGLQQSIINSITICNYKRGDGLIERTDCPVCLNEFEEDESLRL 192
Query: 138 RSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171
KCNH FH +C+D WL H+ CPLCR + I+
Sbjct: 193 LPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMIS 226
>sp|Q9C919|ATL19_ARATH Putative RING-H2 finger protein ATL19 OS=Arabidopsis thaliana
GN=ATL19 PE=3 SV=1
Length = 178
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 19/158 (12%)
Query: 18 LLVLTTPLVISSVVCLILFLFY---ISYYLFTQLYSSRIQTQNQDIEQGLSSQQQQQQRV 74
L +L L+ +S + L++++ + +L T L + D+E G+ QQ+ + V
Sbjct: 23 LCILLVVLIATSALILVIYVIIDCILRPFLGTCL--------DLDLEIGVQRGQQRARIV 74
Query: 75 I---INSTEYKVKEDPRASKFKK----VSWTAFKRDIINNKSHQNDDAVNKTS-TCVICL 126
I ST ++ + R K + V T + ++ +H+ D+ + S C ICL
Sbjct: 75 TYHTIISTGLRLPDFEREGKKRGLKQSVIETLLPKLLVGQGNHEEDEEKSLESRECAICL 134
Query: 127 EEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCR 164
+ +EC+V C HI+H C+D WL +H TCP CR
Sbjct: 135 SGYVVNEECRVFPVCRHIYHALCIDAWLKNHLTCPTCR 172
>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2
SV=1
Length = 362
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 110 HQNDDAVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRR 169
+++ D S C +CL EF + + ++ KCNH FH C+D WL HS CPLCR V
Sbjct: 130 YKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTG 189
Query: 170 IAWPSFTTADDWS 182
+ P+ + + S
Sbjct: 190 VNNPTASVGQNVS 202
>sp|Q9LRB7|EL5_ORYSJ E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica
GN=EL5.1 PE=1 SV=1
Length = 325
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCR 164
C +CL E DG+E + +C H FH C+D WL HSTCPLCR
Sbjct: 134 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 176
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6
PE=1 SV=2
Length = 398
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 17/142 (11%)
Query: 23 TPLVISSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLSSQQQQQQRVIINSTEYK 82
+P + VV LI LF++ ++ + S + + G+S + R +N+
Sbjct: 46 SPAMAVIVVILIAALFFMGFFSIYFRHCSGVP------DAGVSPAGGARSRATVNAAARG 99
Query: 83 VKEDPRASKFKKVSWTAFKRDIINNKSHQNDDAVNKTSTCVICLEEFRDGDECKVRSKCN 142
+ + T D+ K + + C ICL EF D + ++ KC+
Sbjct: 100 LD-----VSVVETFPTFLYSDVKTQKLGKGE------LECAICLNEFEDDETLRLLPKCD 148
Query: 143 HIFHQTCMDDWLDDHSTCPLCR 164
H+FH C+D WL+ H TCP+CR
Sbjct: 149 HVFHPHCIDAWLEAHVTCPVCR 170
>sp|Q9ZV51|ATL56_ARATH RING-H2 finger protein ATL56 OS=Arabidopsis thaliana GN=ATL56 PE=2
SV=1
Length = 181
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%)
Query: 98 TAFKRDIINNKSHQNDDAVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDH 157
+ F + + K + S CV+C + FR G C+ C H+FH+ C+D WL
Sbjct: 86 SRFVKKLPQFKFSEPSTYTRYESDCVVCFDGFRQGQWCRNLPGCGHVFHRKCVDTWLLKA 145
Query: 158 STCPLCRGRVR 168
STCP+CR RVR
Sbjct: 146 STCPICRARVR 156
>sp|Q9SRQ8|ATL51_ARATH RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2
SV=2
Length = 356
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 114 DAVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRG 165
D ++S C +CL EF++ + ++ KCNH FH C+D WL HS CPLCR
Sbjct: 151 DGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRA 202
>sp|Q5NCP0|RNF43_MOUSE E3 ubiquitin-protein ligase RNF43 OS=Mus musculus GN=Rnf43 PE=2
SV=1
Length = 784
Score = 63.9 bits (154), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 115 AVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAWPS 174
+ + T C ICLEEF +G E +V S C H FH+TC+D WL H TCPLC + + S
Sbjct: 265 SCSSTPVCAICLEEFSEGQELRVIS-CLHEFHRTCVDPWLYQHRTCPLCMFNI--VEGDS 321
Query: 175 FTTADDWSP 183
F+ A SP
Sbjct: 322 FSQAPAASP 330
>sp|Q9LM69|ATL80_ARATH RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=1
SV=1
Length = 197
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 30/47 (63%)
Query: 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCR 164
K + C ICL EF GDE +V +C H FH C+D WL HS+CP CR
Sbjct: 107 KFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCPSCR 153
>sp|Q9M0C3|ATL14_ARATH RING-H2 finger protein ATL14 OS=Arabidopsis thaliana GN=ATL14 PE=2
SV=1
Length = 176
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAWPSFTTADDW 181
CV+C++ FR G C+ +C H+FH+ C+D WL STCP+CR RV R F W
Sbjct: 115 CVVCIDGFRQGQWCRKLPRCGHVFHRKCVDLWLIKVSTCPICRDRVYR-----FEEGRRW 169
Query: 182 SP 183
P
Sbjct: 170 RP 171
>sp|P0C035|ATL60_ARATH RING-H2 finger protein ATL60 OS=Arabidopsis thaliana GN=ATL60 PE=2
SV=1
Length = 310
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170
C +CL + DGD+ +V +CNH FH C+D W HSTCPLCR V +
Sbjct: 120 CAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGSV 168
>sp|Q9LUL6|ATL61_ARATH Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana
GN=ATL61 PE=3 SV=1
Length = 204
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRV 167
CV+CL E DGD+ +V C+H FH C+D WL +STCP+CR RV
Sbjct: 88 CVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICRKRV 133
>sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2
SV=1
Length = 181
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%)
Query: 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCR 164
K + C+ICL +F DG++ +V KCNH FH C+D WL S+CP CR
Sbjct: 110 KATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCR 156
>sp|Q9LS99|ATL77_ARATH RING-H2 finger protein ATL77 OS=Arabidopsis thaliana GN=ATL77 PE=2
SV=1
Length = 220
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 71 QQRVIINSTEYKVKEDPRASKFKK-VSWTAFKR-DIINNKSHQNDDAVNKTSTCVICLEE 128
+ R + S + PR S K + A K ++N N V + CVICL +
Sbjct: 79 RSRSFMISDPISIPSTPRDSSVNKGIKKKALKMLPVVNYSPEINLPGVGEE--CVICLSD 136
Query: 129 FRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCR 164
F G++ +V KCNH FH C+D WL H TCP CR
Sbjct: 137 FVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPKCR 172
>sp|Q8LC69|ATL8_ARATH RING-H2 finger protein ATL8 OS=Arabidopsis thaliana GN=ATL8 PE=2
SV=2
Length = 185
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 30/49 (61%)
Query: 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCR 164
K C ICL EF GDE +V +C H FH +C+D WL HS+CP CR
Sbjct: 98 AEKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCPSCR 146
>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2
SV=1
Length = 324
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 29/46 (63%)
Query: 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRV 167
C ICL E GD+ ++ KCNH FH C+D W HSTCP+CR V
Sbjct: 127 CSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV 172
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 109 SHQNDDAVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCR 164
+ N DA T +C +CL++F+ G+ + C+H+FH C+D+WL H +CP+CR
Sbjct: 183 GNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMCR 238
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRV 167
C +CL +F D + ++ KC H FH C+D WL+ H+TCPLCR RV
Sbjct: 124 CSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRV 169
>sp|Q8L9W3|ATL23_ARATH E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana GN=ATL23
PE=1 SV=2
Length = 163
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 78 STEYKVKEDPRASKFKKVS---WTAFKRDIINNKSHQNDDAVNKTSTCVICLEEFRDGDE 134
ST +++ A K V+ + + + I + + + +++ C +CLE+ G
Sbjct: 57 STRRRIERLRFAEPVKPVTGKGLSVLELEKIPKLTGRELAVIARSTECAVCLEDIESGQS 116
Query: 135 CKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRV 167
++ CNH FHQ C D WL +H+ CP+CR +
Sbjct: 117 TRLVPGCNHGFHQLCADTWLSNHTVCPVCRAEL 149
>sp|Q9LZV8|ATL74_ARATH RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2
SV=1
Length = 159
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCR 164
+ C ICL EF DG+ +V CNH FH +C+D WL HS+CP CR
Sbjct: 102 ATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCR 147
>sp|Q9FLC6|ATL73_ARATH RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2
SV=1
Length = 176
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%)
Query: 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCR 164
K + C+ICL +F +G+ +V KCNH FH C+D WL HS+CP CR
Sbjct: 109 KATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCR 155
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%)
Query: 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAWPSFTTA 178
C +CL EF + + +V C H FH C+D W HSTCPLCR V +A T A
Sbjct: 119 CAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVESLAGIESTAA 175
>sp|Q67YI6|ATL65_ARATH RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2
SV=2
Length = 411
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 112 NDDAVNKTST-----CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCR 164
AV KTS C +CL EF +GD + C H FH C+D+WL H CPLCR
Sbjct: 141 GKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCR 198
>sp|P0C034|ATL10_ARATH RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2
SV=1
Length = 251
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 88 RASKFKKVSWTAFKR-DIINNKSHQNDDAVNKTSTCVICLEEFRDGDECKVRSKCNHIFH 146
R S K + A + +++ N +++ CVICL +F G++ ++ KCNH FH
Sbjct: 102 RGSSNKGIKKKALRMFPVVSYSPEMNLPGLDEE--CVICLSDFVSGEQLRLLPKCNHGFH 159
Query: 147 QTCMDDWLDDHSTCPLCR 164
C+D WL H TCP CR
Sbjct: 160 VRCIDKWLQQHLTCPKCR 177
>sp|Q9FHG8|ATL50_ARATH Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana
GN=ATL50 PE=3 SV=1
Length = 210
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 20/157 (12%)
Query: 13 DEGLRLLVLTTPLVISSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLSS-----Q 67
D+ L+ + +P+V+ + L + F + + R QT+ D G++ Q
Sbjct: 23 DKDFDLICMISPIVLLYITLLSIIFFVAALIHLLVKFLHRPQTRLDDAYDGITESSTALQ 82
Query: 68 QQQQQRVIINSTEYKVKEDPRASKFKKVSWTAFKRDIINNKSHQNDDAVNKTSTCVICLE 127
+ Q R ++ E + + D+ S C +CL
Sbjct: 83 GRYQTRFNLHDAEIDQSFIDALPLLHYKTMIGLRHDL---------------SDCAVCLR 127
Query: 128 EFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCR 164
EF DE ++ KC+H FH C+D WL +STCPLCR
Sbjct: 128 EFTAEDELRLLPKCSHAFHVECIDTWLLTNSTCPLCR 164
>sp|Q9LZJ6|ATL5_ARATH RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2
SV=1
Length = 257
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVR 168
C +CL EF + DE +V KC H+FH C+D W S+CPLCR V+
Sbjct: 113 CSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQ 159
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 115 AVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCR 164
A + CVICL +F +G+ KV C H+FH C+D WL + TCPLCR
Sbjct: 133 AKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCR 182
>sp|Q8LF65|ATL17_ARATH RING-H2 finger protein ATL17 OS=Arabidopsis thaliana GN=ATL17 PE=2
SV=2
Length = 235
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAWPSFTTADD 180
C +CL EF+D + +V C H FH C+D W HS+CPLCR ++ A ++ D+
Sbjct: 76 CSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCRSQIEPFAGGVKSSMDE 134
>sp|Q9FG21|ATL71_ARATH Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana
GN=ATL71 PE=3 SV=1
Length = 197
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAWPSFT 176
+ TS C ICL +++ D +V CNH+FH C+D WL H TCP+C R + P+ T
Sbjct: 124 STTSCCSICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVC--RTSPLPSPAMT 181
Query: 177 TADDWSP 183
D P
Sbjct: 182 PVADVVP 188
>sp|O22255|ATL64_ARATH RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2
SV=1
Length = 227
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%)
Query: 109 SHQNDDAVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVR 168
S +N + C +CL EF + DE ++ KC H FH C+D W STCPLCR V+
Sbjct: 95 SSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCRAPVQ 154
>sp|Q5EAE9|ATL43_ARATH RING-H2 finger protein ATL43 OS=Arabidopsis thaliana GN=ATL43 PE=2
SV=2
Length = 407
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 29/46 (63%)
Query: 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRV 167
C +CL F + ++ KC H FH C+D WLD HSTCPLCR RV
Sbjct: 146 CAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRV 191
>sp|Q9LQM2|ATL81_ARATH RING-H2 finger protein ATL81 OS=Arabidopsis thaliana GN=ATL81 PE=2
SV=1
Length = 332
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCR 164
+ T C ICL EF D D ++ S CNH FH C+D W + H TCP+CR
Sbjct: 149 HGTDQCSICLTEFMDDDTIRLISTCNHSFHTICIDLWFEGHKTCPVCR 196
>sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC4G3.12c PE=4 SV=1
Length = 821
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 113 DDAVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWL-DDHSTCPLCRGR 166
D +++ +C+ICLE + +GD C+ C H FHQ C+D WL +++CPLCR
Sbjct: 757 DASLSSADSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCRAH 811
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 77 NSTEYKVKEDPRASKFKKVSWT-----AFKRDIINN-----KSHQNDDAVNKTST-CVIC 125
N++ + D +V++T +D+IN+ S + K C IC
Sbjct: 72 NTSPHGTSSDTEEGGHGEVAFTRRTSRGLGKDVINSFPSFLYSQVKGLKIGKGGVECAIC 131
Query: 126 LEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCR 164
L EF D + ++ C+H FH +C+D WL STCP+CR
Sbjct: 132 LNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCR 170
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCR 164
C +CL EF D + ++ KC H+FH C+D WL H+TCPLCR
Sbjct: 144 CSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCR 186
>sp|Q8LGA5|ATL31_ARATH E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31
PE=1 SV=2
Length = 368
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCR 164
C ICL EF D + ++ KC+H+FH C+ WL H TCP+CR
Sbjct: 124 CAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCR 166
>sp|Q6NKR1|ATL28_ARATH RING-H2 finger protein ATL28 OS=Arabidopsis thaliana GN=ATL28 PE=2
SV=1
Length = 254
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 19/140 (13%)
Query: 25 LVISSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLSSQQQQQQRVIINSTEYKVK 84
+V++ V+ ++F + S +L+ L + T N Q+ +I +T
Sbjct: 25 VVLTGVLLFVIFAGFFSLFLWQFLLNRLFTTWNL--------QRTPYGDLIHVATP---P 73
Query: 85 EDPRASKFKKVSWTAFKRDIINNKSHQNDDAVNKTSTCVICLEEFRDGDECKVRSKCNHI 144
E+ F S+ F K+H + C ICL EF D D ++ + C H
Sbjct: 74 ENTGLDPFIIRSFPVFHYSSATKKNHGTE--------CAICLSEFSDEDTVRLITVCRHP 125
Query: 145 FHQTCMDDWLDDHSTCPLCR 164
FH C+D W + H TCP+CR
Sbjct: 126 FHSNCIDLWFELHKTCPVCR 145
>sp|Q8H7N9|ATL31_ORYSJ E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp.
japonica GN=Os03g0188200 PE=2 SV=1
Length = 353
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%)
Query: 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRV 167
C +CL EF D DE +V C H+FH C+D WL TCPLCR +
Sbjct: 133 CAVCLAEFADSDELRVLPACCHVFHPDCIDPWLAAAVTCPLCRANL 178
>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2
SV=1
Length = 913
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRV 167
TS C ICLE++ DG+E +V C H FH+ C+D WL H TCP CR +
Sbjct: 287 TSDCAICLEKYIDGEELRV-IPCTHRFHRKCVDPWLLQHHTCPHCRHNI 334
>sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1
SV=2
Length = 236
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 105 INNKSHQNDDAVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCR 164
I N DA +C +CL++F+ G+ + C+H+FH C+D+WL H +CP+CR
Sbjct: 174 IKITGKNNLDASGNKDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLFRHGSCPMCR 233
>sp|Q9M0R7|ATL39_ARATH RING-H2 finger protein ATL39 OS=Arabidopsis thaliana GN=ATL39 PE=2
SV=1
Length = 132
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRV 167
CV+CL EF+D + ++ C H+FH C+D WL STCP+CR +V
Sbjct: 85 CVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHSSTCPICRAKV 130
>sp|Q68DV7|RNF43_HUMAN E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1
SV=1
Length = 783
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/42 (59%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLC 163
C ICLEEF +G E +V S C H FH+ C+D WL H TCPLC
Sbjct: 272 CAICLEEFSEGQELRVIS-CLHEFHRNCVDPWLHQHRTCPLC 312
>sp|Q9LSW9|ATL16_ARATH RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2
SV=1
Length = 375
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRV 167
++ C +CL EF+D ++ ++ C+H+FH C+D WL +++ CPLCR RV
Sbjct: 134 RSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRV 183
>sp|Q9LX93|ATL55_ARATH E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55
PE=1 SV=1
Length = 301
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 94 KVSWTAFKRDIINN---KSHQNDDAVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCM 150
++ R IN+ + + + + C +CL EF + + ++ KC+H FH C+
Sbjct: 104 QIPTVGLHRSAINSITVVGFKKGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCI 163
Query: 151 DDWLDDHSTCPLCRGRVRRIAWPSF-TTADDWSPD 184
D WL H CPLCR V I P T + PD
Sbjct: 164 DTWLLSHKNCPLCRAPVLLITEPPHQETETNHQPD 198
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 28 SSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLSSQQQQQQRVIINSTEYKVKEDP 87
++V +++ LF+++ L +Y N D SS + + R S+ ++
Sbjct: 47 TTVFAVLVTLFFLTGLL--SVYIRHCARSNPD-----SSTRYFRNRANDGSSRRGGLDNA 99
Query: 88 RASKFKKVSWTAFKRDIINNKSHQNDDAVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQ 147
F ++++ K I +K + C ICL E D + ++ CNH+FH
Sbjct: 100 VVESFPVFAYSSVKESKIGSKDLE----------CAICLNELEDHETVRLLPICNHLFHI 149
Query: 148 TCMDDWLDDHSTCPLCR 164
C+D WL H+TCP+CR
Sbjct: 150 DCIDTWLYSHATCPVCR 166
>sp|Q6NML0|ATL76_ARATH E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana GN=ATL76
PE=1 SV=1
Length = 225
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 29/43 (67%)
Query: 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCR 164
CVICL +F G++ ++ KCNH FH C+D WL H TCP CR
Sbjct: 135 CVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCR 177
>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9
PE=1 SV=1
Length = 378
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRG 165
C +CL EF D + ++ C H+FH C+D WL +HSTCPLCR
Sbjct: 135 CAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRA 178
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRV 167
C +CL +F + ++ KC H FH C+D WL+ H+TCPLCR RV
Sbjct: 123 CSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRDRV 168
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,028,600
Number of Sequences: 539616
Number of extensions: 2522251
Number of successful extensions: 15041
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 247
Number of HSP's that attempted gapping in prelim test: 14384
Number of HSP's gapped (non-prelim): 766
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)