Query 045853
Match_columns 184
No_of_seqs 168 out of 1781
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 06:11:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.9 2.4E-21 5.2E-26 151.4 9.3 59 120-179 230-289 (348)
2 PF13639 zf-RING_2: Ring finge 99.7 1.1E-18 2.3E-23 98.6 1.8 43 121-164 2-44 (44)
3 PF12678 zf-rbx1: RING-H2 zinc 99.6 1.4E-15 3E-20 94.8 3.9 46 119-164 19-73 (73)
4 PHA02929 N1R/p28-like protein; 99.6 3.8E-15 8.3E-20 112.1 4.7 55 117-171 172-230 (238)
5 COG5243 HRD1 HRD ubiquitin lig 99.5 9.5E-14 2.1E-18 108.3 9.0 52 116-167 284-344 (491)
6 COG5540 RING-finger-containing 99.5 1.3E-14 2.8E-19 110.3 3.0 52 117-169 321-373 (374)
7 PF13920 zf-C3HC4_3: Zinc fing 99.4 1.1E-13 2.3E-18 80.1 2.9 47 119-169 2-49 (50)
8 PLN03208 E3 ubiquitin-protein 99.4 1.8E-13 4E-18 99.0 3.8 55 116-174 15-85 (193)
9 PF12861 zf-Apc11: Anaphase-pr 99.4 4.2E-13 9.2E-18 84.4 3.1 50 119-168 21-82 (85)
10 KOG0317 Predicted E3 ubiquitin 99.3 6.2E-13 1.3E-17 100.8 3.4 52 118-173 238-289 (293)
11 PF13923 zf-C3HC4_2: Zinc fing 99.3 1E-12 2.2E-17 72.0 2.9 38 122-163 1-39 (39)
12 KOG0823 Predicted E3 ubiquitin 99.3 8.2E-13 1.8E-17 97.4 2.9 61 116-180 44-107 (230)
13 cd00162 RING RING-finger (Real 99.3 1.3E-12 2.9E-17 73.5 2.9 44 121-167 1-45 (45)
14 PHA02926 zinc finger-like prot 99.3 2.3E-12 5.1E-17 94.4 3.4 60 116-175 167-237 (242)
15 KOG0320 Predicted E3 ubiquitin 99.3 3.3E-12 7.1E-17 90.4 2.8 52 118-171 130-181 (187)
16 PF14634 zf-RING_5: zinc-RING 99.2 1.2E-11 2.7E-16 69.4 2.9 44 121-165 1-44 (44)
17 KOG0802 E3 ubiquitin ligase [P 99.2 3.6E-11 7.9E-16 101.8 6.7 56 117-173 289-346 (543)
18 PF15227 zf-C3HC4_4: zinc fing 99.2 1.7E-11 3.6E-16 68.0 2.9 38 122-163 1-42 (42)
19 PF00097 zf-C3HC4: Zinc finger 99.1 3.8E-11 8.2E-16 66.5 3.0 39 122-163 1-41 (41)
20 KOG1734 Predicted RING-contain 99.1 4E-10 8.7E-15 84.7 7.5 61 112-173 217-286 (328)
21 smart00184 RING Ring finger. E 99.1 1E-10 2.2E-15 63.4 2.7 38 122-163 1-39 (39)
22 COG5194 APC11 Component of SCF 99.1 1.1E-10 2.4E-15 71.5 2.9 47 122-168 34-81 (88)
23 smart00504 Ubox Modified RING 99.0 1.3E-10 2.9E-15 70.4 2.9 47 121-171 3-49 (63)
24 KOG1493 Anaphase-promoting com 99.0 3.9E-11 8.5E-16 72.9 0.1 51 118-168 19-81 (84)
25 TIGR00599 rad18 DNA repair pro 99.0 2.7E-10 5.9E-15 91.8 3.6 52 116-171 23-74 (397)
26 PF13445 zf-RING_UBOX: RING-ty 98.9 8.2E-10 1.8E-14 61.2 2.5 39 122-161 1-43 (43)
27 KOG4265 Predicted E3 ubiquitin 98.9 5.2E-10 1.1E-14 87.5 2.1 84 83-170 252-338 (349)
28 PF11793 FANCL_C: FANCL C-term 98.8 5.6E-10 1.2E-14 68.9 0.4 49 120-168 3-66 (70)
29 KOG2164 Predicted E3 ubiquitin 98.8 1.5E-09 3.3E-14 88.4 2.5 56 119-178 186-246 (513)
30 COG5574 PEX10 RING-finger-cont 98.8 1.5E-09 3.2E-14 81.7 2.0 52 117-172 213-266 (271)
31 KOG0287 Postreplication repair 98.8 8.3E-10 1.8E-14 85.6 -0.7 55 120-178 24-78 (442)
32 smart00744 RINGv The RING-vari 98.8 5.9E-09 1.3E-13 59.7 2.8 42 121-164 1-49 (49)
33 KOG4172 Predicted E3 ubiquitin 98.7 3.5E-09 7.6E-14 60.2 0.7 46 120-169 8-55 (62)
34 KOG0828 Predicted E3 ubiquitin 98.7 5.8E-09 1.3E-13 84.5 1.9 53 116-168 568-634 (636)
35 TIGR00570 cdk7 CDK-activating 98.7 1.6E-08 3.4E-13 78.7 4.1 57 119-175 3-61 (309)
36 COG5432 RAD18 RING-finger-cont 98.7 5.7E-09 1.2E-13 79.5 1.2 53 121-177 27-79 (391)
37 KOG0804 Cytoplasmic Zn-finger 98.7 1.2E-08 2.5E-13 82.0 2.6 53 114-168 170-222 (493)
38 KOG2930 SCF ubiquitin ligase, 98.7 9.8E-09 2.1E-13 66.2 1.7 29 140-168 80-108 (114)
39 PF04564 U-box: U-box domain; 98.6 3.8E-08 8.3E-13 61.3 3.3 48 120-171 5-53 (73)
40 KOG0827 Predicted E3 ubiquitin 98.6 2.1E-08 4.5E-13 79.2 1.9 48 120-167 5-55 (465)
41 COG5219 Uncharacterized conser 98.6 1.8E-08 3.8E-13 87.4 0.8 55 113-167 1463-1522(1525)
42 KOG2177 Predicted E3 ubiquitin 98.3 2.9E-07 6.2E-12 72.3 1.7 46 116-165 10-55 (386)
43 KOG0978 E3 ubiquitin ligase in 98.3 2.1E-07 4.6E-12 79.4 0.7 49 120-172 644-693 (698)
44 KOG1039 Predicted E3 ubiquitin 98.3 4.9E-07 1.1E-11 71.9 2.4 59 117-175 159-228 (344)
45 KOG4445 Uncharacterized conser 98.3 2.8E-07 6.2E-12 70.6 0.9 54 114-168 110-186 (368)
46 KOG1645 RING-finger-containing 98.2 6.6E-07 1.4E-11 71.3 2.8 50 118-167 3-55 (463)
47 KOG0825 PHD Zn-finger protein 98.2 2.9E-07 6.2E-12 78.6 0.2 57 121-178 125-181 (1134)
48 KOG0824 Predicted E3 ubiquitin 98.1 8.4E-07 1.8E-11 68.2 1.6 49 119-171 7-56 (324)
49 PF14835 zf-RING_6: zf-RING of 98.1 5E-07 1.1E-11 53.7 0.0 44 121-170 9-53 (65)
50 KOG0311 Predicted E3 ubiquitin 98.0 7.7E-07 1.7E-11 69.8 -0.5 52 117-171 41-93 (381)
51 KOG1941 Acetylcholine receptor 98.0 2.8E-06 6.1E-11 67.5 1.8 49 120-168 366-416 (518)
52 KOG3970 Predicted E3 ubiquitin 97.8 1.5E-05 3.2E-10 59.0 2.7 51 119-171 50-108 (299)
53 KOG4159 Predicted E3 ubiquitin 97.8 1.5E-05 3.2E-10 64.8 2.5 49 117-169 82-130 (398)
54 KOG1428 Inhibitor of type V ad 97.8 1.3E-05 2.7E-10 72.9 2.2 56 115-171 3482-3547(3738)
55 PF05883 Baculo_RING: Baculovi 97.7 1.9E-05 4.2E-10 54.1 2.3 45 119-164 26-76 (134)
56 KOG4275 Predicted E3 ubiquitin 97.7 1.1E-05 2.3E-10 61.9 0.5 43 119-169 300-343 (350)
57 KOG0297 TNF receptor-associate 97.7 2E-05 4.3E-10 64.4 2.0 52 116-171 18-70 (391)
58 KOG1785 Tyrosine kinase negati 97.7 1.9E-05 4.2E-10 63.0 1.8 47 121-171 371-419 (563)
59 PF12906 RINGv: RING-variant d 97.7 3.3E-05 7.2E-10 43.7 2.1 40 122-163 1-47 (47)
60 PHA02862 5L protein; Provision 97.6 3.7E-05 8E-10 53.1 2.3 45 120-169 3-54 (156)
61 PF11789 zf-Nse: Zinc-finger o 97.5 6.5E-05 1.4E-09 44.3 2.1 39 120-162 12-53 (57)
62 COG5152 Uncharacterized conser 97.3 9.3E-05 2E-09 53.8 1.2 44 121-168 198-241 (259)
63 PHA02825 LAP/PHD finger-like p 97.3 0.00035 7.6E-09 49.2 4.0 52 116-170 5-61 (162)
64 PF14570 zf-RING_4: RING/Ubox 97.3 0.00031 6.8E-09 39.5 2.8 45 122-167 1-47 (48)
65 PF10367 Vps39_2: Vacuolar sor 97.2 0.0015 3.3E-08 43.4 6.3 35 115-151 74-108 (109)
66 KOG2114 Vacuolar assembly/sort 97.2 0.00064 1.4E-08 59.3 5.0 43 119-167 840-882 (933)
67 KOG3039 Uncharacterized conser 97.2 0.0003 6.5E-09 52.9 2.6 54 120-173 222-275 (303)
68 KOG2660 Locus-specific chromos 97.1 0.00011 2.4E-09 57.5 0.1 52 116-170 12-63 (331)
69 KOG1002 Nucleotide excision re 97.1 0.00021 4.5E-09 59.3 1.5 51 114-168 531-586 (791)
70 KOG1952 Transcription factor N 97.1 0.00031 6.7E-09 61.2 2.5 51 117-167 189-246 (950)
71 KOG2879 Predicted E3 ubiquitin 97.1 0.00054 1.2E-08 52.4 3.4 54 112-168 232-287 (298)
72 KOG1814 Predicted E3 ubiquitin 97.1 0.00069 1.5E-08 54.6 4.1 45 120-165 185-237 (445)
73 KOG1571 Predicted E3 ubiquitin 97.1 0.0004 8.6E-09 55.1 2.6 50 113-169 299-348 (355)
74 KOG4692 Predicted E3 ubiquitin 97.0 0.00066 1.4E-08 53.7 3.6 50 116-169 419-468 (489)
75 KOG1813 Predicted E3 ubiquitin 97.0 0.00034 7.4E-09 54.0 1.4 47 120-170 242-288 (313)
76 KOG1940 Zn-finger protein [Gen 96.9 0.00046 1E-08 53.4 1.8 45 121-165 160-204 (276)
77 PF07800 DUF1644: Protein of u 96.9 0.00071 1.5E-08 47.7 2.4 33 119-155 2-47 (162)
78 KOG0827 Predicted E3 ubiquitin 96.9 5.4E-05 1.2E-09 60.3 -3.7 53 118-171 195-248 (465)
79 PHA03096 p28-like protein; Pro 96.9 0.00053 1.1E-08 53.6 1.7 46 120-165 179-231 (284)
80 PF04641 Rtf2: Rtf2 RING-finge 96.8 0.0014 3E-08 50.9 3.6 61 116-177 110-170 (260)
81 KOG0826 Predicted E3 ubiquitin 96.8 0.006 1.3E-07 47.9 6.7 51 114-167 295-345 (357)
82 KOG4739 Uncharacterized protei 96.7 0.00053 1.2E-08 51.6 0.9 50 121-174 5-54 (233)
83 KOG4185 Predicted E3 ubiquitin 96.7 0.001 2.3E-08 52.4 2.2 48 120-167 4-54 (296)
84 KOG3268 Predicted E3 ubiquitin 96.7 0.0011 2.5E-08 47.4 2.0 29 140-168 189-228 (234)
85 KOG0801 Predicted E3 ubiquitin 96.5 0.00073 1.6E-08 47.7 0.3 31 116-147 174-204 (205)
86 PF14446 Prok-RING_1: Prokaryo 96.5 0.0035 7.6E-08 36.1 2.8 33 118-150 4-36 (54)
87 PF14447 Prok-RING_4: Prokaryo 96.4 0.0018 3.9E-08 37.4 1.2 44 121-170 9-52 (55)
88 COG5236 Uncharacterized conser 96.3 0.004 8.8E-08 49.3 3.3 60 113-176 55-116 (493)
89 PF08746 zf-RING-like: RING-li 96.2 0.0036 7.9E-08 34.6 1.9 41 122-163 1-43 (43)
90 KOG2034 Vacuolar sorting prote 96.1 0.018 3.9E-07 50.9 6.3 40 114-155 812-851 (911)
91 KOG1001 Helicase-like transcri 95.9 0.003 6.4E-08 55.1 0.8 55 120-179 455-511 (674)
92 KOG3002 Zn finger protein [Gen 95.5 0.0063 1.4E-07 48.0 1.5 46 116-169 45-92 (299)
93 PF10272 Tmpp129: Putative tra 95.5 0.023 5.1E-07 45.8 4.7 54 115-168 267-351 (358)
94 KOG3800 Predicted E3 ubiquitin 95.5 0.012 2.6E-07 45.6 2.8 58 121-178 2-61 (300)
95 KOG0309 Conserved WD40 repeat- 95.5 0.0078 1.7E-07 52.2 1.9 24 139-162 1046-1069(1081)
96 KOG3161 Predicted E3 ubiquitin 95.5 0.0045 9.8E-08 52.7 0.4 42 121-165 13-54 (861)
97 PF03854 zf-P11: P-11 zinc fin 95.3 0.013 2.8E-07 32.7 1.8 41 122-168 5-46 (50)
98 COG5175 MOT2 Transcriptional r 95.3 0.014 2.9E-07 46.3 2.6 55 117-171 12-67 (480)
99 KOG3053 Uncharacterized conser 95.3 0.0087 1.9E-07 45.5 1.4 53 115-167 16-81 (293)
100 KOG1100 Predicted E3 ubiquitin 95.2 0.039 8.5E-07 41.3 4.6 39 122-168 161-200 (207)
101 COG5183 SSM4 Protein involved 95.0 0.029 6.4E-07 49.2 3.9 57 115-171 8-69 (1175)
102 KOG1609 Protein involved in mR 94.8 0.022 4.8E-07 45.2 2.5 52 119-170 78-136 (323)
103 COG5220 TFB3 Cdk activating ki 94.4 0.014 3.1E-07 44.0 0.5 57 119-175 10-71 (314)
104 COG5222 Uncharacterized conser 94.4 0.052 1.1E-06 42.3 3.6 43 120-165 275-318 (427)
105 PF12273 RCR: Chitin synthesis 94.2 0.05 1.1E-06 37.6 2.9 7 43-49 20-26 (130)
106 KOG1812 Predicted E3 ubiquitin 93.8 0.036 7.7E-07 45.5 1.7 38 117-155 144-182 (384)
107 KOG2932 E3 ubiquitin ligase in 93.6 0.023 5E-07 44.4 0.3 46 121-171 92-137 (389)
108 KOG0298 DEAD box-containing he 93.6 0.02 4.3E-07 52.5 -0.0 47 118-167 1152-1198(1394)
109 KOG3899 Uncharacterized conser 92.8 0.058 1.3E-06 41.9 1.5 29 141-169 325-366 (381)
110 KOG4362 Transcriptional regula 92.6 0.033 7.2E-07 48.2 -0.0 51 120-174 22-75 (684)
111 KOG0825 PHD Zn-finger protein 92.4 0.1 2.2E-06 45.9 2.6 53 117-169 94-155 (1134)
112 PF12273 RCR: Chitin synthesis 90.8 0.27 5.8E-06 33.9 2.9 21 35-55 9-29 (130)
113 PF06906 DUF1272: Protein of u 90.4 0.45 9.8E-06 27.5 3.1 47 121-171 7-55 (57)
114 PF13901 DUF4206: Domain of un 90.2 0.21 4.5E-06 37.3 2.1 41 119-165 152-197 (202)
115 PF15050 SCIMP: SCIMP protein 89.5 0.76 1.6E-05 31.0 4.0 21 16-36 6-26 (133)
116 KOG2066 Vacuolar assembly/sort 89.3 0.12 2.6E-06 45.4 0.3 45 119-165 784-832 (846)
117 KOG0802 E3 ubiquitin ligase [P 88.7 0.22 4.8E-06 42.8 1.4 49 115-171 475-523 (543)
118 PF07975 C1_4: TFIIH C1-like d 88.6 0.36 7.8E-06 27.6 1.8 43 122-164 2-50 (51)
119 COG5415 Predicted integral mem 88.4 5.5 0.00012 29.8 8.1 27 141-167 195-224 (251)
120 PF05290 Baculo_IE-1: Baculovi 88.3 0.45 9.8E-06 32.7 2.4 53 118-171 79-135 (140)
121 KOG2068 MOT2 transcription fac 88.1 0.5 1.1E-05 37.5 2.9 56 120-175 250-305 (327)
122 KOG1829 Uncharacterized conser 88.1 0.17 3.8E-06 43.3 0.4 43 119-165 511-558 (580)
123 KOG3005 GIY-YIG type nuclease 87.9 0.34 7.5E-06 37.3 1.8 50 119-168 182-243 (276)
124 smart00249 PHD PHD zinc finger 87.7 0.36 7.8E-06 26.2 1.5 30 122-152 2-31 (47)
125 KOG0269 WD40 repeat-containing 87.4 0.45 9.7E-06 41.8 2.4 45 121-167 781-827 (839)
126 KOG3113 Uncharacterized conser 87.4 0.64 1.4E-05 35.6 2.9 59 117-177 109-167 (293)
127 PF13974 YebO: YebO-like prote 87.0 2.2 4.8E-05 26.8 4.7 28 42-69 14-41 (80)
128 PF00628 PHD: PHD-finger; Int 86.7 0.3 6.4E-06 27.6 0.7 43 122-165 2-50 (51)
129 PF11023 DUF2614: Protein of u 86.6 3.3 7.2E-05 27.7 5.6 30 136-171 70-99 (114)
130 PF02439 Adeno_E3_CR2: Adenovi 86.3 2.2 4.8E-05 22.6 3.8 7 39-45 22-28 (38)
131 PF00412 LIM: LIM domain; Int 86.0 0.49 1.1E-05 27.3 1.4 40 122-171 1-40 (58)
132 PF06716 DUF1201: Protein of u 85.4 4.1 8.9E-05 22.6 4.7 31 23-53 9-39 (54)
133 KOG2817 Predicted E3 ubiquitin 85.3 0.78 1.7E-05 37.3 2.7 47 120-167 335-384 (394)
134 PF13719 zinc_ribbon_5: zinc-r 85.0 0.51 1.1E-05 25.0 1.1 26 121-146 4-36 (37)
135 KOG4367 Predicted Zn-finger pr 84.2 0.68 1.5E-05 38.2 1.9 34 118-155 3-36 (699)
136 smart00132 LIM Zinc-binding do 84.0 0.77 1.7E-05 23.8 1.5 37 122-168 2-38 (39)
137 PF02009 Rifin_STEVOR: Rifin/s 83.6 4.6 0.0001 32.0 6.3 27 18-44 256-282 (299)
138 PF13717 zinc_ribbon_4: zinc-r 83.0 0.7 1.5E-05 24.3 1.1 26 121-146 4-36 (36)
139 KOG4718 Non-SMC (structural ma 83.0 0.7 1.5E-05 34.4 1.4 41 121-164 183-223 (235)
140 PF01363 FYVE: FYVE zinc finge 80.8 0.64 1.4E-05 28.1 0.5 35 120-154 10-44 (69)
141 PTZ00370 STEVOR; Provisional 80.7 2.3 5.1E-05 33.3 3.6 27 24-50 256-282 (296)
142 PF10571 UPF0547: Uncharacteri 80.5 0.89 1.9E-05 22.1 0.8 23 121-145 2-24 (26)
143 KOG1815 Predicted E3 ubiquitin 79.6 1.1 2.5E-05 37.5 1.7 36 117-155 68-103 (444)
144 KOG3842 Adaptor protein Pellin 79.5 2.3 5.1E-05 33.7 3.2 53 117-169 339-415 (429)
145 PF06143 Baculo_11_kDa: Baculo 79.4 13 0.00029 23.5 6.6 17 28-44 41-57 (84)
146 TIGR00622 ssl1 transcription f 79.2 2.1 4.5E-05 28.7 2.5 45 120-164 56-110 (112)
147 PF02318 FYVE_2: FYVE-type zin 79.0 1.5 3.2E-05 29.7 1.8 47 118-166 53-103 (118)
148 PF04710 Pellino: Pellino; In 78.9 0.63 1.4E-05 37.9 0.0 24 140-166 308-337 (416)
149 PF14979 TMEM52: Transmembrane 77.9 6.7 0.00015 27.5 4.8 41 6-46 6-47 (154)
150 cd00065 FYVE FYVE domain; Zinc 77.2 2 4.3E-05 24.7 1.8 36 120-155 3-38 (57)
151 PF06844 DUF1244: Protein of u 76.9 1.4 3E-05 26.4 1.0 12 144-155 11-22 (68)
152 PF06024 DUF912: Nucleopolyhed 76.7 0.32 6.9E-06 32.1 -1.9 11 39-49 80-90 (101)
153 PHA02650 hypothetical protein; 76.6 4.4 9.6E-05 25.2 3.2 8 13-20 44-51 (81)
154 KOG1812 Predicted E3 ubiquitin 75.6 1.4 3E-05 36.3 1.1 46 119-165 306-353 (384)
155 PF06365 CD34_antigen: CD34/Po 75.6 1.7 3.6E-05 32.4 1.4 27 22-48 102-128 (202)
156 PF10883 DUF2681: Protein of u 73.7 21 0.00045 22.9 5.9 16 34-49 14-29 (87)
157 smart00064 FYVE Protein presen 72.8 3.4 7.4E-05 24.7 2.1 37 119-155 10-46 (68)
158 KOG3039 Uncharacterized conser 72.4 3.4 7.4E-05 31.7 2.4 38 114-155 38-75 (303)
159 cd00350 rubredoxin_like Rubred 72.4 2.1 4.5E-05 21.9 0.9 20 140-165 6-25 (33)
160 PF00558 Vpu: Vpu protein; In 71.9 6.8 0.00015 24.7 3.3 13 35-47 19-31 (81)
161 PF15050 SCIMP: SCIMP protein 71.5 11 0.00025 25.5 4.5 21 30-50 16-36 (133)
162 COG5109 Uncharacterized conser 71.4 2.4 5.2E-05 33.6 1.4 44 121-165 338-384 (396)
163 PF07649 C1_3: C1-like domain; 70.4 3.7 8E-05 20.3 1.6 29 121-150 2-30 (30)
164 KOG4185 Predicted E3 ubiquitin 70.4 0.68 1.5E-05 36.5 -1.8 49 118-166 206-265 (296)
165 PF15176 LRR19-TM: Leucine-ric 70.3 17 0.00036 23.9 4.9 23 14-36 12-34 (102)
166 PF01102 Glycophorin_A: Glycop 69.9 9.6 0.00021 26.0 4.0 16 38-53 78-93 (122)
167 PF05393 Hum_adeno_E3A: Human 69.3 8.4 0.00018 24.5 3.3 7 47-53 55-61 (94)
168 PHA02819 hypothetical protein; 69.2 20 0.00044 21.8 4.8 11 13-23 41-51 (71)
169 PF07010 Endomucin: Endomucin; 68.1 16 0.00034 27.8 5.0 26 23-48 191-216 (259)
170 PF11669 WBP-1: WW domain-bind 67.2 15 0.00033 24.2 4.4 13 41-53 35-47 (102)
171 PF07010 Endomucin: Endomucin; 67.2 13 0.00028 28.2 4.4 10 6-15 179-188 (259)
172 COG3813 Uncharacterized protei 66.7 7 0.00015 23.9 2.5 48 121-172 7-56 (84)
173 PHA03054 IMV membrane protein; 66.6 24 0.00052 21.5 4.7 11 13-23 43-53 (72)
174 KOG4577 Transcription factor L 66.3 1.7 3.7E-05 34.0 -0.3 42 120-171 93-134 (383)
175 PHA02844 putative transmembran 64.7 25 0.00054 21.6 4.6 11 12-22 42-52 (75)
176 PF04423 Rad50_zn_hook: Rad50 64.6 2.6 5.7E-05 24.2 0.3 12 158-169 21-32 (54)
177 PF05545 FixQ: Cbb3-type cytoc 64.3 23 0.0005 19.7 4.8 8 41-48 26-33 (49)
178 PHA03099 epidermal growth fact 64.2 6.5 0.00014 27.0 2.2 8 40-47 120-127 (139)
179 KOG2113 Predicted RNA binding 63.6 5.6 0.00012 31.6 2.1 48 114-167 338-386 (394)
180 PF05399 EVI2A: Ectropic viral 63.5 28 0.00061 26.1 5.5 24 22-45 131-154 (227)
181 PF15353 HECA: Headcase protei 63.3 4.9 0.00011 26.6 1.5 15 141-155 40-54 (107)
182 PF14569 zf-UDP: Zinc-binding 62.5 16 0.00034 22.8 3.5 50 120-169 10-63 (80)
183 PF09723 Zn-ribbon_8: Zinc rib 61.3 1.5 3.3E-05 23.8 -1.0 26 139-165 9-34 (42)
184 smart00647 IBR In Between Ring 61.2 1.9 4.2E-05 25.2 -0.7 20 134-153 39-58 (64)
185 PF14169 YdjO: Cold-inducible 61.2 4 8.8E-05 24.0 0.7 15 156-170 38-52 (59)
186 PF14311 DUF4379: Domain of un 61.1 6.1 0.00013 22.7 1.5 25 138-163 31-55 (55)
187 PF02891 zf-MIZ: MIZ/SP-RING z 61.1 6.7 0.00014 22.2 1.6 42 121-166 4-50 (50)
188 PF06667 PspB: Phage shock pro 61.0 37 0.00081 21.0 5.5 14 38-51 15-28 (75)
189 PF07191 zinc-ribbons_6: zinc- 60.8 0.92 2E-05 27.7 -2.1 39 121-168 3-41 (70)
190 PF05454 DAG1: Dystroglycan (D 60.4 2.9 6.2E-05 33.0 0.0 9 39-47 163-171 (290)
191 KOG1701 Focal adhesion adaptor 60.3 1.1 2.3E-05 36.9 -2.4 40 121-172 336-375 (468)
192 PLN02189 cellulose synthase 60.3 15 0.00032 34.2 4.3 53 119-171 34-90 (1040)
193 KOG2231 Predicted E3 ubiquitin 59.5 9.8 0.00021 33.6 3.0 49 121-173 2-57 (669)
194 KOG3726 Uncharacterized conser 59.4 81 0.0018 28.1 8.4 40 121-164 656-696 (717)
195 PRK00418 DNA gyrase inhibitor; 59.4 6.8 0.00015 23.3 1.5 11 158-168 7-17 (62)
196 PF02723 NS3_envE: Non-structu 58.8 39 0.00084 21.4 4.9 34 12-45 8-41 (82)
197 PF03884 DUF329: Domain of unk 58.6 4.8 0.0001 23.6 0.7 12 158-169 3-14 (57)
198 PF05191 ADK_lid: Adenylate ki 58.4 5 0.00011 21.0 0.7 32 136-169 2-33 (36)
199 PHA02657 hypothetical protein; 58.2 28 0.00061 22.0 4.1 25 25-49 28-52 (95)
200 PRK13130 H/ACA RNA-protein com 58.2 8.3 0.00018 22.5 1.7 25 157-181 17-41 (56)
201 PF14654 Epiglycanin_C: Mucin, 58.2 21 0.00045 23.3 3.6 24 27-50 23-46 (106)
202 PRK05978 hypothetical protein; 57.9 6 0.00013 28.0 1.3 28 137-169 35-64 (148)
203 PF12877 DUF3827: Domain of un 57.3 7.2 0.00016 34.1 1.8 45 2-49 253-297 (684)
204 PF05605 zf-Di19: Drought indu 56.5 1.4 2.9E-05 25.3 -1.8 37 120-167 3-41 (54)
205 PF07204 Orthoreo_P10: Orthore 56.4 31 0.00067 22.4 4.1 7 22-28 41-47 (98)
206 PHA02650 hypothetical protein; 56.3 47 0.001 20.7 5.0 39 10-48 37-75 (81)
207 PF06937 EURL: EURL protein; 56.1 9 0.00019 29.8 2.0 42 120-161 31-74 (285)
208 PRK06231 F0F1 ATP synthase sub 56.0 81 0.0018 23.5 7.1 16 41-56 65-80 (205)
209 COG4736 CcoQ Cbb3-type cytochr 55.9 41 0.00089 19.9 4.9 14 37-50 22-35 (60)
210 PF08113 CoxIIa: Cytochrome c 55.6 28 0.0006 17.9 3.8 8 35-42 21-28 (34)
211 KOG4323 Polycomb-like PHD Zn-f 55.5 4.6 0.0001 33.9 0.4 56 119-174 168-232 (464)
212 COG1545 Predicted nucleic-acid 55.5 5.6 0.00012 27.8 0.8 23 137-167 31-53 (140)
213 CHL00019 atpF ATP synthase CF0 55.4 72 0.0016 23.2 6.7 6 42-47 42-47 (184)
214 PF04216 FdhE: Protein involve 55.2 2 4.3E-05 33.9 -1.7 49 117-165 170-219 (290)
215 PF05454 DAG1: Dystroglycan (D 54.7 4.1 8.8E-05 32.2 0.0 40 13-52 140-179 (290)
216 KOG2071 mRNA cleavage and poly 54.7 8.2 0.00018 33.3 1.8 36 117-154 511-557 (579)
217 COG3492 Uncharacterized protei 54.6 6.4 0.00014 25.2 0.9 12 144-155 42-53 (104)
218 KOG0824 Predicted E3 ubiquitin 54.5 4.4 9.5E-05 32.0 0.1 50 117-169 103-152 (324)
219 PF15102 TMEM154: TMEM154 prot 54.1 1.6 3.6E-05 30.6 -2.0 8 18-25 58-65 (146)
220 KOG3799 Rab3 effector RIM1 and 54.1 4.3 9.4E-05 28.0 0.1 46 114-167 60-117 (169)
221 PRK14475 F0F1 ATP synthase sub 53.0 41 0.0009 24.1 5.0 7 15-21 9-15 (167)
222 PLN02436 cellulose synthase A 52.9 23 0.0005 33.1 4.3 53 119-171 36-92 (1094)
223 PF10497 zf-4CXXC_R1: Zinc-fin 52.8 19 0.00041 23.9 2.9 27 139-165 31-69 (105)
224 PHA02975 hypothetical protein; 51.9 42 0.00091 20.3 4.0 7 14-20 40-46 (69)
225 PF10577 UPF0560: Uncharacteri 51.6 18 0.0004 32.5 3.4 31 16-46 269-299 (807)
226 PF03107 C1_2: C1 domain; Int 50.9 9.2 0.0002 19.0 1.0 29 121-150 2-30 (30)
227 KOG2807 RNA polymerase II tran 50.0 9.3 0.0002 30.6 1.3 44 121-165 332-375 (378)
228 PF07282 OrfB_Zn_ribbon: Putat 49.9 15 0.00033 21.9 2.0 33 120-152 29-63 (69)
229 PF13314 DUF4083: Domain of un 49.8 51 0.0011 19.3 5.7 8 42-49 26-33 (58)
230 PF05393 Hum_adeno_E3A: Human 49.7 30 0.00066 22.1 3.3 12 41-52 52-63 (94)
231 PF10146 zf-C4H2: Zinc finger- 49.5 12 0.00025 28.6 1.7 25 145-169 196-220 (230)
232 KOG2041 WD40 repeat protein [G 49.2 8.2 0.00018 34.4 1.0 44 120-167 1132-1184(1189)
233 PF10661 EssA: WXG100 protein 49.2 39 0.00084 23.8 4.2 23 23-45 118-140 (145)
234 PF13832 zf-HC5HC2H_2: PHD-zin 49.0 19 0.00041 23.7 2.6 34 119-153 55-88 (110)
235 PF10669 Phage_Gp23: Protein g 49.0 73 0.0016 20.8 7.4 17 29-45 22-38 (121)
236 smart00531 TFIIE Transcription 48.7 15 0.00032 25.8 2.1 15 157-171 123-137 (147)
237 COG4741 Predicted secreted end 48.4 98 0.0021 22.1 6.1 6 51-56 29-34 (175)
238 KOG3579 Predicted E3 ubiquitin 48.2 8.7 0.00019 30.1 0.9 33 120-156 269-305 (352)
239 PF08274 PhnA_Zn_Ribbon: PhnA 47.9 12 0.00025 18.8 1.0 24 121-144 4-28 (30)
240 PF15145 DUF4577: Domain of un 47.5 57 0.0012 21.9 4.4 7 25-31 67-73 (128)
241 KOG1819 FYVE finger-containing 46.6 20 0.00043 30.6 2.8 33 118-150 900-932 (990)
242 PF12191 stn_TNFRSF12A: Tumour 46.1 2.8 6.1E-05 28.6 -1.8 9 9-17 66-74 (129)
243 PF06750 DiS_P_DiS: Bacterial 46.0 11 0.00025 24.2 1.1 36 120-168 34-69 (92)
244 PF03376 Adeno_E3B: Adenovirus 45.7 66 0.0014 19.3 5.7 44 11-54 10-53 (67)
245 PRK01343 zinc-binding protein; 45.6 14 0.00029 21.7 1.2 12 157-168 9-20 (57)
246 PRK04778 septation ring format 45.4 67 0.0015 28.0 6.0 6 44-49 22-27 (569)
247 KOG1729 FYVE finger containing 45.4 3.9 8.4E-05 32.3 -1.4 35 121-156 216-250 (288)
248 PRK10633 hypothetical protein; 45.2 77 0.0017 19.9 4.9 27 9-35 35-61 (80)
249 KOG1538 Uncharacterized conser 44.9 7.6 0.00016 34.3 0.1 38 131-168 1040-1077(1081)
250 KOG4451 Uncharacterized conser 44.6 15 0.00032 27.9 1.6 24 146-169 252-275 (286)
251 PRK00523 hypothetical protein; 44.4 74 0.0016 19.5 5.3 22 27-48 12-33 (72)
252 TIGR00540 hemY_coli hemY prote 43.9 1.1E+02 0.0023 25.3 6.7 14 14-27 37-50 (409)
253 PRK11827 hypothetical protein; 43.4 6.9 0.00015 23.2 -0.2 18 152-169 3-20 (60)
254 PF05399 EVI2A: Ectropic viral 43.0 1E+02 0.0022 23.3 5.6 32 8-39 119-151 (227)
255 PF05715 zf-piccolo: Piccolo Z 42.8 12 0.00025 22.1 0.6 12 157-168 2-13 (61)
256 PF12297 EVC2_like: Ellis van 42.8 34 0.00073 28.5 3.5 25 12-36 61-85 (429)
257 TIGR00686 phnA alkylphosphonat 42.2 13 0.00028 24.8 0.9 24 120-143 3-27 (109)
258 PRK03564 formate dehydrogenase 42.2 10 0.00022 30.3 0.4 42 118-165 186-234 (309)
259 PF08374 Protocadherin: Protoc 42.0 11 0.00023 28.4 0.5 7 6-12 27-33 (221)
260 PF07271 Cytadhesin_P30: Cytad 42.0 48 0.0011 25.9 4.0 10 39-48 89-98 (279)
261 PHA03255 BDLF3; Provisional 41.8 88 0.0019 22.7 5.0 11 12-22 178-188 (234)
262 KOG2789 Putative Zn-finger pro 41.8 11 0.00024 31.0 0.6 35 118-154 73-107 (482)
263 PF09237 GAGA: GAGA factor; I 41.8 9 0.00019 21.9 0.1 9 159-167 26-34 (54)
264 PF14584 DUF4446: Protein of u 41.7 85 0.0018 22.3 5.0 19 113-131 91-109 (151)
265 PHA02692 hypothetical protein; 41.6 81 0.0018 19.2 4.7 12 12-23 39-50 (70)
266 PRK01844 hypothetical protein; 41.6 83 0.0018 19.3 5.3 19 28-46 12-30 (72)
267 PLN02915 cellulose synthase A 41.1 53 0.0011 30.8 4.7 52 118-169 14-69 (1044)
268 PF10083 DUF2321: Uncharacteri 41.0 13 0.00028 26.5 0.7 45 123-170 8-52 (158)
269 PRK10747 putative protoheme IX 40.4 1.2E+02 0.0026 25.0 6.5 14 15-28 38-51 (398)
270 PLN02248 cellulose synthase-li 40.4 62 0.0013 30.6 5.0 61 114-175 119-184 (1135)
271 PF03119 DNA_ligase_ZBD: NAD-d 40.3 12 0.00026 18.4 0.4 11 159-169 1-11 (28)
272 PF13748 ABC_membrane_3: ABC t 40.1 1.7E+02 0.0037 22.5 6.9 12 38-49 151-162 (237)
273 PF15361 RIC3: Resistance to i 40.1 1E+02 0.0022 21.9 5.2 22 11-32 74-95 (152)
274 smart00834 CxxC_CXXC_SSSS Puta 39.8 7.2 0.00016 20.5 -0.5 28 139-167 9-36 (41)
275 PRK13718 conjugal transfer pro 39.3 91 0.002 19.5 4.2 8 39-46 58-65 (84)
276 COG1592 Rubrerythrin [Energy p 38.4 8.2 0.00018 27.9 -0.5 25 135-166 134-158 (166)
277 COG2835 Uncharacterized conser 38.4 13 0.00027 22.0 0.3 10 159-168 10-19 (60)
278 PF05510 Sarcoglycan_2: Sarcog 38.3 78 0.0017 26.2 4.9 22 25-46 289-310 (386)
279 PF12606 RELT: Tumour necrosis 37.9 56 0.0012 18.5 2.9 12 42-53 20-31 (50)
280 TIGR01562 FdhE formate dehydro 37.8 8.9 0.00019 30.6 -0.5 43 118-166 183-233 (305)
281 PF07280 DUF1443: Protein of u 37.8 30 0.00066 18.9 1.8 11 39-49 10-20 (43)
282 smart00734 ZnF_Rad18 Rad18-lik 37.8 13 0.00029 17.8 0.3 9 159-167 3-11 (26)
283 PRK10220 hypothetical protein; 37.7 20 0.00043 23.9 1.2 24 120-143 4-28 (111)
284 PRK04023 DNA polymerase II lar 37.7 23 0.0005 32.9 2.0 52 114-171 621-677 (1121)
285 KOG1815 Predicted E3 ubiquitin 37.3 10 0.00023 31.8 -0.2 37 120-156 227-267 (444)
286 PF11014 DUF2852: Protein of u 37.0 1.1E+02 0.0024 20.7 4.7 24 24-47 13-36 (115)
287 cd01324 cbb3_Oxidase_CcoQ Cyto 36.9 60 0.0013 18.1 3.0 13 38-50 24-36 (48)
288 KOG2593 Transcription initiati 36.8 82 0.0018 26.4 4.8 46 112-170 121-166 (436)
289 PRK09458 pspB phage shock prot 36.4 96 0.0021 19.2 4.0 8 43-50 23-30 (75)
290 PF14770 TMEM18: Transmembrane 36.3 1.4E+02 0.003 20.4 6.2 29 10-38 74-103 (123)
291 PF15018 InaF-motif: TRP-inter 35.7 50 0.0011 17.6 2.3 21 25-45 11-31 (38)
292 PF04710 Pellino: Pellino; In 35.5 12 0.00027 30.7 0.0 50 119-169 328-402 (416)
293 KOG2979 Protein involved in DN 35.4 23 0.0005 27.4 1.4 39 121-162 178-218 (262)
294 COG3105 Uncharacterized protei 35.4 1.5E+02 0.0033 20.5 7.1 16 54-69 40-55 (138)
295 PLN02638 cellulose synthase A 35.3 81 0.0018 29.7 5.0 51 119-169 17-71 (1079)
296 PF09943 DUF2175: Uncharacteri 35.3 34 0.00073 22.5 2.0 33 121-155 4-36 (101)
297 COG5627 MMS21 DNA repair prote 35.2 20 0.00043 27.4 1.1 47 120-169 190-240 (275)
298 COG2260 Predicted Zn-ribbon RN 35.1 29 0.00063 20.3 1.5 23 158-180 18-40 (59)
299 COG3364 Zn-ribbon containing p 34.9 23 0.0005 23.3 1.2 24 139-166 6-29 (112)
300 PTZ00370 STEVOR; Provisional 34.8 86 0.0019 24.8 4.4 36 14-49 243-278 (296)
301 PRK04989 psbM photosystem II r 34.7 72 0.0016 16.6 3.2 20 25-44 8-27 (35)
302 PHA03286 envelope glycoprotein 34.5 67 0.0015 27.1 4.0 11 152-164 476-486 (492)
303 COG3771 Predicted membrane pro 34.5 1.3E+02 0.0027 19.3 6.4 18 38-55 59-76 (97)
304 KOG3352 Cytochrome c oxidase, 34.4 21 0.00046 25.2 1.0 8 122-130 114-121 (153)
305 KOG4443 Putative transcription 34.4 21 0.00045 31.4 1.1 30 139-168 39-73 (694)
306 PTZ00208 65 kDa invariant surf 34.3 25 0.00054 29.1 1.5 21 29-49 393-413 (436)
307 PF04135 Nop10p: Nucleolar RNA 34.2 41 0.0009 19.3 2.0 25 158-182 18-42 (53)
308 PF13120 DUF3974: Domain of un 34.1 48 0.001 21.5 2.5 23 25-47 8-30 (126)
309 PF01708 Gemini_mov: Geminivir 33.7 27 0.00059 22.4 1.3 9 11-19 27-35 (91)
310 PRK09731 putative general secr 33.7 1.9E+02 0.0042 21.2 7.3 18 37-54 48-65 (178)
311 PF11682 DUF3279: Protein of u 33.3 22 0.00047 24.5 0.9 22 140-170 102-123 (128)
312 COG3071 HemY Uncharacterized e 33.0 1.7E+02 0.0038 24.3 6.1 28 13-40 36-63 (400)
313 PF03229 Alpha_GJ: Alphavirus 32.8 1.6E+02 0.0034 20.0 5.2 16 23-38 86-101 (126)
314 PRK10862 SoxR reducing system 32.4 1.8E+02 0.004 20.6 5.6 13 38-50 113-125 (154)
315 PF10204 DuoxA: Dual oxidase m 32.3 80 0.0017 24.9 4.0 27 2-28 1-27 (281)
316 COG4966 PilW Tfp pilus assembl 32.2 69 0.0015 25.7 3.6 39 13-55 12-50 (318)
317 PF13453 zf-TFIIB: Transcripti 32.1 16 0.00036 19.4 0.1 14 159-172 1-14 (41)
318 COG4477 EzrA Negative regulato 31.7 73 0.0016 27.5 3.9 19 37-55 14-32 (570)
319 PRK11088 rrmA 23S rRNA methylt 31.5 29 0.00064 26.8 1.5 24 121-145 4-27 (272)
320 PF10766 DUF2592: Protein of u 31.5 90 0.0019 16.7 2.8 17 16-32 5-21 (41)
321 PHA03235 DNA packaging protein 31.4 1.3E+02 0.0029 24.9 5.4 15 6-20 18-32 (409)
322 KOG4482 Sarcoglycan complex, a 31.3 1.2E+02 0.0025 25.2 4.7 26 22-47 298-323 (449)
323 PTZ00382 Variant-specific surf 31.2 2.8 6E-05 27.4 -3.6 8 3-10 46-53 (96)
324 PF09356 Phage_BR0599: Phage c 31.1 53 0.0011 20.5 2.3 25 128-153 40-64 (80)
325 PF07406 NICE-3: NICE-3 protei 31.0 71 0.0015 23.6 3.3 18 145-162 124-143 (186)
326 COG2824 PhnA Uncharacterized Z 30.6 24 0.00051 23.4 0.7 15 120-134 4-18 (112)
327 PHA03164 hypothetical protein; 30.6 35 0.00077 21.1 1.4 8 35-42 72-79 (88)
328 COG4768 Uncharacterized protei 30.4 1.9E+02 0.0041 20.1 5.9 7 38-44 17-23 (139)
329 COG1622 CyoA Heme/copper-type 30.2 90 0.0019 24.1 3.9 12 150-161 216-227 (247)
330 PF12756 zf-C2H2_2: C2H2 type 30.1 19 0.0004 22.7 0.2 48 121-168 1-61 (100)
331 COG5353 Uncharacterized protei 29.8 83 0.0018 22.3 3.3 7 42-48 24-30 (161)
332 PHA02655 hypothetical protein; 29.8 27 0.00059 21.3 0.8 10 22-31 69-78 (94)
333 CHL00080 psbM photosystem II p 29.7 89 0.0019 16.1 3.1 20 25-44 8-27 (34)
334 COG4357 Zinc finger domain con 29.5 39 0.00084 22.0 1.5 29 141-170 65-93 (105)
335 PLN02400 cellulose synthase 29.4 69 0.0015 30.2 3.6 52 119-170 36-91 (1085)
336 PF04906 Tweety: Tweety; Inte 29.1 1.4E+02 0.003 25.0 5.1 13 3-15 1-13 (406)
337 TIGR02098 MJ0042_CXXC MJ0042 f 28.8 43 0.00094 17.2 1.5 11 121-131 4-14 (38)
338 PF13771 zf-HC5HC2H: PHD-like 28.7 33 0.00071 21.5 1.2 31 121-152 38-68 (90)
339 COG4847 Uncharacterized protei 28.2 66 0.0014 20.9 2.4 34 121-156 8-41 (103)
340 TIGR03038 PS_II_psbM photosyst 27.9 96 0.0021 15.9 3.3 19 26-44 9-27 (33)
341 KOG0955 PHD finger protein BR1 27.9 28 0.0006 32.6 0.9 38 114-151 214-252 (1051)
342 COG0675 Transposase and inacti 27.9 35 0.00076 26.9 1.4 33 117-152 307-339 (364)
343 KOG3653 Transforming growth fa 27.7 68 0.0015 27.4 3.0 12 146-157 291-302 (534)
344 PRK11486 flagellar biosynthesi 27.7 2E+02 0.0043 19.7 4.8 6 11-16 12-17 (124)
345 PHA03240 envelope glycoprotein 27.4 79 0.0017 23.9 3.0 19 20-38 213-231 (258)
346 PRK14094 psbM photosystem II r 27.3 67 0.0014 17.9 2.0 20 25-44 8-27 (50)
347 KOG1140 N-end rule pathway, re 26.7 39 0.00084 33.4 1.6 16 140-155 1150-1165(1738)
348 PF03966 Trm112p: Trm112p-like 26.4 46 0.001 19.9 1.4 10 136-145 54-63 (68)
349 TIGR02523 type_IV_pilV type IV 26.3 2.3E+02 0.0049 19.7 5.7 21 15-35 3-23 (139)
350 PF06196 DUF997: Protein of un 26.1 1.7E+02 0.0038 18.3 4.8 24 10-33 36-59 (80)
351 PLN02195 cellulose synthase A 26.0 77 0.0017 29.5 3.3 50 119-168 6-59 (977)
352 COG1377 FlhB Flagellar biosynt 25.7 2E+02 0.0044 23.7 5.3 36 14-49 181-216 (363)
353 KOG1512 PHD Zn-finger protein 25.6 29 0.00062 27.4 0.5 30 121-151 316-345 (381)
354 PF05151 PsbM: Photosystem II 25.6 1E+02 0.0023 15.5 3.3 18 27-44 10-27 (31)
355 PF01485 IBR: IBR domain; Int 25.4 7.3 0.00016 22.6 -2.3 33 121-153 20-58 (64)
356 PF05502 Dynactin_p62: Dynacti 25.3 31 0.00067 29.5 0.7 13 121-133 28-40 (483)
357 TIGR02605 CxxC_CxxC_SSSS putat 25.2 23 0.00049 19.8 -0.1 23 138-165 8-34 (52)
358 KOG4671 Brain cell membrane pr 25.1 2.3E+02 0.005 20.9 4.9 26 6-31 67-92 (201)
359 PRK12705 hypothetical protein; 25.1 1.1E+02 0.0025 26.3 4.0 31 21-51 1-31 (508)
360 PF12072 DUF3552: Domain of un 24.9 2.9E+02 0.0063 20.4 7.3 10 35-44 15-24 (201)
361 PF08209 Sgf11: Sgf11 (transcr 24.8 21 0.00045 18.3 -0.2 14 159-172 6-19 (33)
362 PF02480 Herpes_gE: Alphaherpe 24.8 24 0.00053 29.7 0.0 51 2-52 335-385 (439)
363 COG3086 RseC Positive regulato 24.6 2.6E+02 0.0057 19.8 5.2 49 12-60 73-135 (150)
364 PF13268 DUF4059: Protein of u 24.6 1.8E+02 0.0038 17.9 5.0 40 18-57 6-45 (72)
365 PF12955 DUF3844: Domain of un 24.6 1.7E+02 0.0037 19.4 3.9 28 12-39 63-90 (103)
366 COG5574 PEX10 RING-finger-cont 24.6 66 0.0014 25.1 2.3 42 114-155 90-132 (271)
367 COG4839 FtsL Protein required 24.5 2.4E+02 0.0051 19.2 8.4 76 27-116 39-114 (120)
368 COG3114 CcmD Heme exporter pro 24.5 1.7E+02 0.0037 17.6 6.6 53 12-70 13-65 (67)
369 PF06697 DUF1191: Protein of u 24.4 32 0.00068 27.1 0.5 64 2-65 196-259 (278)
370 PRK09731 putative general secr 24.4 2.9E+02 0.0063 20.2 6.6 46 28-73 39-84 (178)
371 PHA02610 uvsY.-2 hypothetical 24.3 29 0.00062 19.8 0.2 11 160-170 4-14 (53)
372 CHL00019 atpF ATP synthase CF0 24.2 2.8E+02 0.0061 20.1 7.0 66 8-73 12-77 (184)
373 PRK04778 septation ring format 24.2 2.1E+02 0.0045 25.0 5.5 43 20-62 1-43 (569)
374 COG5416 Uncharacterized integr 24.1 2.1E+02 0.0047 18.6 5.0 51 7-57 43-93 (98)
375 COG3024 Uncharacterized protei 23.9 54 0.0012 19.6 1.3 21 157-177 7-27 (65)
376 KOG4218 Nuclear hormone recept 23.9 49 0.0011 26.9 1.5 43 115-164 11-74 (475)
377 PRK14473 F0F1 ATP synthase sub 23.8 2.7E+02 0.0058 19.7 8.3 60 15-74 5-65 (164)
378 PRK07353 F0F1 ATP synthase sub 23.8 2.4E+02 0.0053 19.2 8.1 60 15-74 3-62 (140)
379 PF03839 Sec62: Translocation 23.7 1.6E+02 0.0035 22.4 4.2 29 18-46 140-168 (224)
380 KOG3054 Uncharacterized conser 23.7 1.3E+02 0.0027 23.4 3.6 24 26-49 4-27 (299)
381 PF14991 MLANA: Protein melan- 23.6 16 0.00034 24.6 -1.1 27 27-53 29-55 (118)
382 PHA03030 hypothetical protein; 23.4 54 0.0012 21.6 1.4 24 28-51 4-27 (122)
383 TIGR00373 conserved hypothetic 23.4 84 0.0018 22.4 2.5 41 128-171 102-142 (158)
384 PF13807 GNVR: G-rich domain o 23.3 1.9E+02 0.0041 17.8 4.5 33 4-37 47-79 (82)
385 PRK06266 transcription initiat 23.2 91 0.002 22.7 2.7 41 128-171 110-150 (178)
386 PRK05702 flhB flagellar biosyn 23.2 2.1E+02 0.0045 23.5 5.0 65 8-72 175-239 (359)
387 PRK02919 oxaloacetate decarbox 23.1 2.1E+02 0.0045 18.1 4.5 31 14-44 9-39 (82)
388 PF11084 DUF2621: Protein of u 23.0 2.7E+02 0.0058 19.3 4.8 31 22-52 5-35 (141)
389 PTZ00303 phosphatidylinositol 23.0 55 0.0012 29.9 1.7 37 113-149 454-495 (1374)
390 PRK12705 hypothetical protein; 22.8 4.9E+02 0.011 22.6 7.3 56 18-73 1-81 (508)
391 PHA03290 envelope glycoprotein 22.7 21 0.00045 28.7 -0.7 66 3-68 257-323 (357)
392 PF04375 HemX: HemX; InterPro 22.5 4.4E+02 0.0095 21.6 6.9 48 25-72 30-77 (372)
393 KOG4550 Predicted membrane pro 22.5 1.6E+02 0.0034 25.0 4.1 41 19-59 560-600 (606)
394 PF04999 FtsL: Cell division p 22.5 2.2E+02 0.0047 18.1 6.9 50 28-77 15-64 (97)
395 PF03554 Herpes_UL73: UL73 vir 22.4 2.1E+02 0.0047 18.0 4.7 28 20-47 48-75 (82)
396 KOG3927 Na+/K+ ATPase, beta su 22.4 1.6E+02 0.0036 23.5 4.2 34 19-52 44-77 (300)
397 COG1704 LemA Uncharacterized c 22.3 3.3E+02 0.0071 20.1 5.5 80 22-101 1-80 (185)
398 cd00729 rubredoxin_SM Rubredox 22.2 57 0.0012 16.7 1.1 23 121-143 4-26 (34)
399 TIGR01404 FlhB_rel_III type II 22.1 2.4E+02 0.0051 23.0 5.1 64 9-72 168-231 (342)
400 PF09802 Sec66: Preprotein tra 22.1 2.2E+02 0.0048 21.1 4.5 30 21-50 6-35 (190)
401 PF11807 DUF3328: Domain of un 22.0 2.1E+02 0.0046 20.6 4.6 33 11-43 3-35 (217)
402 COG3167 PilO Tfp pilus assembl 22.0 3.4E+02 0.0075 20.2 6.3 50 27-76 25-74 (211)
403 PF10112 Halogen_Hydrol: 5-bro 22.0 3.3E+02 0.0071 20.0 5.6 70 16-85 17-86 (199)
404 PHA00027 lys lysis protein 22.0 1.7E+02 0.0037 16.7 5.5 46 1-46 3-48 (58)
405 TIGR01432 QOXA cytochrome aa3 21.9 3.5E+02 0.0075 20.3 6.6 49 4-52 3-51 (217)
406 PF11770 GAPT: GRB2-binding ad 21.8 29 0.00063 24.6 -0.1 48 23-70 9-56 (158)
407 PRK13455 F0F1 ATP synthase sub 21.6 3.2E+02 0.007 19.7 6.1 57 26-82 29-85 (184)
408 PF05808 Podoplanin: Podoplani 21.5 31 0.00067 24.8 0.0 44 8-51 116-159 (162)
409 KOG4021 Mitochondrial ribosoma 21.5 49 0.0011 24.5 1.0 27 147-173 97-124 (239)
410 PF00672 HAMP: HAMP domain; I 21.3 1.2E+02 0.0027 17.4 2.7 29 27-55 1-29 (70)
411 PF13913 zf-C2HC_2: zinc-finge 21.2 22 0.00047 16.8 -0.6 13 160-172 5-17 (25)
412 PF11057 Cortexin: Cortexin of 21.2 1.5E+02 0.0033 18.4 2.9 20 27-46 31-50 (81)
413 COG2268 Uncharacterized protei 21.2 62 0.0014 28.1 1.7 27 18-44 10-36 (548)
414 TIGR03068 srtB_sig_NPQTN sorta 21.2 1.4E+02 0.0029 15.3 2.9 26 12-37 4-29 (33)
415 COG4306 Uncharacterized protei 21.2 51 0.0011 22.6 1.0 23 145-170 30-52 (160)
416 PF11694 DUF3290: Protein of u 20.9 1.6E+02 0.0034 20.9 3.5 31 22-52 17-47 (149)
417 COG4537 ComGC Competence prote 20.9 1.3E+02 0.0028 19.8 2.7 22 15-36 13-34 (107)
418 smart00109 C1 Protein kinase C 20.8 98 0.0021 16.4 2.0 36 117-152 9-44 (49)
419 TIGR03141 cytochro_ccmD heme e 20.8 1.6E+02 0.0035 16.0 5.7 42 15-56 3-44 (45)
420 PF05337 CSF-1: Macrophage col 20.7 33 0.00072 26.9 0.0 32 24-55 226-257 (285)
421 PF02148 zf-UBP: Zn-finger in 20.6 64 0.0014 18.9 1.3 22 122-146 1-22 (63)
422 PF15339 Afaf: Acrosome format 20.6 2.3E+02 0.005 20.7 4.2 38 19-56 132-169 (200)
423 COG1996 RPC10 DNA-directed RNA 20.5 64 0.0014 18.2 1.1 22 122-143 9-32 (49)
424 COG3322 Predicted periplasmic 20.5 4.5E+02 0.0097 21.0 8.1 58 17-74 11-68 (295)
425 PF04689 S1FA: DNA binding pro 20.5 82 0.0018 18.8 1.6 27 21-47 14-40 (69)
426 PHA02902 putative IMV membrane 20.4 2.1E+02 0.0045 17.1 3.4 23 28-50 6-28 (70)
427 KOG3816 Cell differentiation r 20.4 50 0.0011 27.3 0.9 27 123-153 92-118 (526)
428 PF03672 UPF0154: Uncharacteri 20.3 2.1E+02 0.0046 17.1 4.2 27 25-51 2-28 (64)
429 PF00001 7tm_1: 7 transmembran 20.3 3.4E+02 0.0073 19.5 6.2 61 16-76 145-205 (257)
430 PF10886 DUF2685: Protein of u 20.2 40 0.00087 19.4 0.3 10 160-169 4-13 (54)
431 PRK12721 secretion system appa 20.2 2.6E+02 0.0056 22.9 5.0 65 8-72 168-232 (349)
432 COG3197 FixS Uncharacterized p 20.1 1.4E+02 0.003 17.5 2.5 20 20-39 5-24 (58)
433 PF05440 MtrB: Tetrahydrometha 20.1 2.6E+02 0.0057 18.3 4.1 42 2-43 55-96 (97)
434 KOG4684 Uncharacterized conser 20.1 44 0.00096 25.2 0.5 29 135-165 169-197 (275)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.4e-21 Score=151.43 Aligned_cols=59 Identities=37% Similarity=0.940 Sum_probs=50.5
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCc-ccccccccccccCCCCCCCC
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHST-CPLCRGRVRRIAWPSFTTAD 179 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~-CP~CR~~i~~~~~~~~~~~~ 179 (184)
..|+||+|+|..+|++|+|| |+|.||..||+.||..+++ ||+||+++....-......|
T Consensus 230 ~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~~~~e~ 289 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGSEPVSED 289 (348)
T ss_pred ceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCCCCCCccCC
Confidence 58999999999999999985 9999999999999987765 99999999766644444443
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.73 E-value=1.1e-18 Score=98.62 Aligned_cols=43 Identities=47% Similarity=1.293 Sum_probs=39.6
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCR 164 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR 164 (184)
+|+||+++|..++.+..++ |||.||.+||..|++.+.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 6999999999988888885 999999999999999999999998
No 3
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.58 E-value=1.4e-15 Score=94.85 Aligned_cols=46 Identities=43% Similarity=1.024 Sum_probs=35.8
Q ss_pred CcccccCcccccCC---------ccceeecCCCccccHhhHHHHhcCCCcccccc
Q 045853 119 TSTCVICLEEFRDG---------DECKVRSKCNHIFHQTCMDDWLDDHSTCPLCR 164 (184)
Q Consensus 119 ~~~C~ICl~~~~~~---------~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR 164 (184)
++.|+||++.+.+. +-...+.+|||.||..||.+|++.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 44699999999422 22234457999999999999999999999998
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.55 E-value=3.8e-15 Score=112.06 Aligned_cols=55 Identities=35% Similarity=0.848 Sum_probs=45.5
Q ss_pred CCCcccccCcccccCCc----cceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 117 NKTSTCVICLEEFRDGD----ECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~----~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
..+.+|+||++.+.+.+ .+.++++|+|.||.+||.+|+..+.+||+||.++....
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~ 230 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVI 230 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEe
Confidence 45678999999987643 23466789999999999999999999999999886443
No 5
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=9.5e-14 Score=108.29 Aligned_cols=52 Identities=42% Similarity=1.027 Sum_probs=42.6
Q ss_pred CCCCcccccCccc-ccCC--------ccceeecCCCccccHhhHHHHhcCCCccccccccc
Q 045853 116 VNKTSTCVICLEE-FRDG--------DECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRV 167 (184)
Q Consensus 116 ~~~~~~C~ICl~~-~~~~--------~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i 167 (184)
..++..|.||+++ |..+ ++.+..++|||+||.+|++.|++++++||+||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 4566789999999 4443 23444557999999999999999999999999995
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.3e-14 Score=110.25 Aligned_cols=52 Identities=37% Similarity=0.913 Sum_probs=46.0
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHHHhc-CCCccccccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD-DHSTCPLCRGRVRR 169 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~ 169 (184)
..+.+|+|||++|..+|.++++| |+|.||..|++.|+. -+..||+||..+.+
T Consensus 321 ~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 34478999999999999999985 999999999999998 56779999998853
No 7
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.42 E-value=1.1e-13 Score=80.15 Aligned_cols=47 Identities=34% Similarity=0.845 Sum_probs=39.4
Q ss_pred CcccccCcccccCCccceeecCCCcc-ccHhhHHHHhcCCCccccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHI-FHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
+..|.||++...+ .++.+|||. |+..|+..|++.+..||+||+++..
T Consensus 2 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRD----VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSS----EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCc----eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 3579999999777 555579999 9999999999999999999999864
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.40 E-value=1.8e-13 Score=99.04 Aligned_cols=55 Identities=29% Similarity=0.744 Sum_probs=43.3
Q ss_pred CCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcC----------------CCcccccccccccccCCC
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD----------------HSTCPLCRGRVRRIAWPS 174 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----------------~~~CP~CR~~i~~~~~~~ 174 (184)
..++.+|+||++.+.+ .+.++|||.||..||..|+.. ..+||+||.++....+..
T Consensus 15 ~~~~~~CpICld~~~d----PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvP 85 (193)
T PLN03208 15 SGGDFDCNICLDQVRD----PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVP 85 (193)
T ss_pred CCCccCCccCCCcCCC----cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEE
Confidence 3455789999999877 555679999999999999852 357999999997655433
No 9
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.36 E-value=4.2e-13 Score=84.36 Aligned_cols=50 Identities=40% Similarity=0.996 Sum_probs=39.8
Q ss_pred CcccccCccccc--------CCccce-eecCCCccccHhhHHHHhcC---CCcccccccccc
Q 045853 119 TSTCVICLEEFR--------DGDECK-VRSKCNHIFHQTCMDDWLDD---HSTCPLCRGRVR 168 (184)
Q Consensus 119 ~~~C~ICl~~~~--------~~~~~~-~l~~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~i~ 168 (184)
++.|.||...|+ .+|..+ +...|+|.||..||.+|+.. +..||+||++..
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 668999999998 334433 33479999999999999984 568999999764
No 10
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=6.2e-13 Score=100.81 Aligned_cols=52 Identities=31% Similarity=0.794 Sum_probs=45.4
Q ss_pred CCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccccCC
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAWP 173 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~~ 173 (184)
....|.+||+...+ +...||||+||..||..|...+..||+||....+..+.
T Consensus 238 a~~kC~LCLe~~~~----pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 238 ATRKCSLCLENRSN----PSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCceEEEecCCCC----CCcCcCcchHHHHHHHHHHccccCCCcccccCCCccee
Confidence 34689999999988 66678999999999999999999999999998766543
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.33 E-value=1e-12 Score=72.01 Aligned_cols=38 Identities=42% Similarity=1.177 Sum_probs=32.5
Q ss_pred cccCcccccCCccce-eecCCCccccHhhHHHHhcCCCccccc
Q 045853 122 CVICLEEFRDGDECK-VRSKCNHIFHQTCMDDWLDDHSTCPLC 163 (184)
Q Consensus 122 C~ICl~~~~~~~~~~-~l~~C~H~FH~~Ci~~Wl~~~~~CP~C 163 (184)
|+||++.+.+ + +..+|||.|+.+|+.+|++.+.+||+|
T Consensus 1 C~iC~~~~~~----~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD----PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS----EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC----cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999988 4 456799999999999999999999998
No 12
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=8.2e-13 Score=97.36 Aligned_cols=61 Identities=26% Similarity=0.609 Sum_probs=50.1
Q ss_pred CCCCcccccCcccccCCccceeecCCCccccHhhHHHHhc---CCCcccccccccccccCCCCCCCCC
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD---DHSTCPLCRGRVRRIAWPSFTTADD 180 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~i~~~~~~~~~~~~~ 180 (184)
.....+|.|||+.-++ .++..|||.||..||.+||+ ....||+||..+....+.+.+.++.
T Consensus 44 ~~~~FdCNICLd~akd----PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~ 107 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKD----PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRGS 107 (230)
T ss_pred CCCceeeeeeccccCC----CEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccCC
Confidence 4455689999999888 66666999999999999998 4556999999998888777666554
No 13
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.31 E-value=1.3e-12 Score=73.46 Aligned_cols=44 Identities=50% Similarity=1.207 Sum_probs=36.1
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcC-CCccccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD-HSTCPLCRGRV 167 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i 167 (184)
+|+||++.+. +. ..+++|||.||..|++.|+.. +..||+||..+
T Consensus 1 ~C~iC~~~~~--~~-~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EP-VVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--Cc-eEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999982 23 444469999999999999986 77899999864
No 14
>PHA02926 zinc finger-like protein; Provisional
Probab=99.28 E-value=2.3e-12 Score=94.42 Aligned_cols=60 Identities=38% Similarity=0.813 Sum_probs=43.9
Q ss_pred CCCCcccccCcccccCC----c-cceeecCCCccccHhhHHHHhcCC------CcccccccccccccCCCC
Q 045853 116 VNKTSTCVICLEEFRDG----D-ECKVRSKCNHIFHQTCMDDWLDDH------STCPLCRGRVRRIAWPSF 175 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~----~-~~~~l~~C~H~FH~~Ci~~Wl~~~------~~CP~CR~~i~~~~~~~~ 175 (184)
.+.+.+|+||++..-+. + .-.++++|+|.||..||..|.+.+ .+||+||..+.......|
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf 237 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKF 237 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccccc
Confidence 34456899999986331 1 234677899999999999999742 459999998875554433
No 15
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=3.3e-12 Score=90.41 Aligned_cols=52 Identities=33% Similarity=0.797 Sum_probs=43.3
Q ss_pred CCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
....|+|||+.+.... .+-.+|||+||+.||+.-++....||+||+.|....
T Consensus 130 ~~~~CPiCl~~~sek~--~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKV--PVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ 181 (187)
T ss_pred cccCCCceecchhhcc--ccccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence 3357999999998733 344579999999999999999999999999886544
No 16
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.20 E-value=1.2e-11 Score=69.44 Aligned_cols=44 Identities=30% Similarity=0.859 Sum_probs=36.4
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRG 165 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 165 (184)
+|.||++.|.++.. ..++.|||+|+..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~-~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERR-PRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCC-eEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999944444 455579999999999999866788999985
No 17
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.6e-11 Score=101.79 Aligned_cols=56 Identities=36% Similarity=0.846 Sum_probs=45.8
Q ss_pred CCCcccccCcccccCCcc--ceeecCCCccccHhhHHHHhcCCCcccccccccccccCC
Q 045853 117 NKTSTCVICLEEFRDGDE--CKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAWP 173 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~--~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~~ 173 (184)
..+..|+||++++..+.. ...+ +|||+||..|+..|+++..+||+||..+......
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL-~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~~~ 346 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRL-PCGHIFHDSCLRSWFERQQTCPTCRTVLYDYVLW 346 (543)
T ss_pred hcCCeeeeechhhcccccccccee-ecccchHHHHHHHHHHHhCcCCcchhhhhccccc
Confidence 345689999999998754 4455 5999999999999999999999999966555443
No 18
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.18 E-value=1.7e-11 Score=68.01 Aligned_cols=38 Identities=37% Similarity=0.982 Sum_probs=30.1
Q ss_pred cccCcccccCCccceeecCCCccccHhhHHHHhcCC----Cccccc
Q 045853 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDH----STCPLC 163 (184)
Q Consensus 122 C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~----~~CP~C 163 (184)
|+||++.|.+ ++.++|||.|+..||.+|++.. ..||.|
T Consensus 1 CpiC~~~~~~----Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD----PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS----EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC----ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999 8878899999999999999843 369987
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.14 E-value=3.8e-11 Score=66.45 Aligned_cols=39 Identities=44% Similarity=1.113 Sum_probs=33.4
Q ss_pred cccCcccccCCccceeecCCCccccHhhHHHHhc--CCCccccc
Q 045853 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD--DHSTCPLC 163 (184)
Q Consensus 122 C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~--~~~~CP~C 163 (184)
|+||++.+.... .+.+|||.|+..|+.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~~---~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV---ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE---EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC---EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999998832 2567999999999999998 67789998
No 20
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=4e-10 Score=84.73 Aligned_cols=61 Identities=25% Similarity=0.548 Sum_probs=46.9
Q ss_pred CcccCCCCcccccCcccccCCc-------cceeecCCCccccHhhHHHHhc--CCCcccccccccccccCC
Q 045853 112 NDDAVNKTSTCVICLEEFRDGD-------ECKVRSKCNHIFHQTCMDDWLD--DHSTCPLCRGRVRRIAWP 173 (184)
Q Consensus 112 ~~~~~~~~~~C~ICl~~~~~~~-------~~~~l~~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~i~~~~~~ 173 (184)
......++..|+||-..+..+. .+-.+ .|+|+||+.||.-|.. .+++||.||+.+.-...+
T Consensus 217 lPtkhl~d~vCaVCg~~~~~s~~eegvienty~L-sCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmf 286 (328)
T KOG1734|consen 217 LPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKL-SCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMF 286 (328)
T ss_pred CCCCCCCcchhHhhcchheeecchhhhhhhheee-ecccchHHHhhhhheeecCCCCCchHHHHhhHhhhc
Confidence 3344556678999998887554 44556 5999999999999975 788999999988755533
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=99.07 E-value=1e-10 Score=63.44 Aligned_cols=38 Identities=47% Similarity=1.214 Sum_probs=30.9
Q ss_pred cccCcccccCCccceeecCCCccccHhhHHHHhc-CCCccccc
Q 045853 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD-DHSTCPLC 163 (184)
Q Consensus 122 C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~C 163 (184)
|+||++.... ...+ +|||.||..|++.|+. .+..||+|
T Consensus 1 C~iC~~~~~~---~~~~-~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKD---PVVL-PCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCC---cEEe-cCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899998433 3444 6999999999999998 67779987
No 22
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=99.06 E-value=1.1e-10 Score=71.54 Aligned_cols=47 Identities=43% Similarity=0.897 Sum_probs=34.9
Q ss_pred cccCcccccCCccceee-cCCCccccHhhHHHHhcCCCcccccccccc
Q 045853 122 CVICLEEFRDGDECKVR-SKCNHIFHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 122 C~ICl~~~~~~~~~~~l-~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
|+=|...+..+++..+. ..|+|.||.+||.+||..+..||++|+...
T Consensus 34 C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 34 CPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred CcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 33333444456655542 259999999999999999999999999764
No 23
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.05 E-value=1.3e-10 Score=70.38 Aligned_cols=47 Identities=23% Similarity=0.459 Sum_probs=41.0
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
.|+||.+.+.+ ++..+|||+|+..||..|++.+.+||+|+..+...+
T Consensus 3 ~Cpi~~~~~~~----Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~ 49 (63)
T smart00504 3 LCPISLEVMKD----PVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHED 49 (63)
T ss_pred CCcCCCCcCCC----CEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhh
Confidence 59999999988 555679999999999999998889999999885443
No 24
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3.9e-11 Score=72.87 Aligned_cols=51 Identities=37% Similarity=0.948 Sum_probs=39.4
Q ss_pred CCcccccCccccc--------CCccceee-cCCCccccHhhHHHHhc---CCCcccccccccc
Q 045853 118 KTSTCVICLEEFR--------DGDECKVR-SKCNHIFHQTCMDDWLD---DHSTCPLCRGRVR 168 (184)
Q Consensus 118 ~~~~C~ICl~~~~--------~~~~~~~l-~~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~i~ 168 (184)
.++.|.||.-.|. .+|..+++ -.|.|.||..||.+|+. .+..||+||+...
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3448999999997 45555542 26999999999999997 3456999999753
No 25
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.99 E-value=2.7e-10 Score=91.83 Aligned_cols=52 Identities=29% Similarity=0.713 Sum_probs=43.8
Q ss_pred CCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
......|+||++.|.. .++.+|||.||..||..|+.....||+||..+....
T Consensus 23 Le~~l~C~IC~d~~~~----PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~ 74 (397)
T TIGR00599 23 LDTSLRCHICKDFFDV----PVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESK 74 (397)
T ss_pred cccccCCCcCchhhhC----ccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccccc
Confidence 4455689999999977 555679999999999999998889999999886543
No 26
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.91 E-value=8.2e-10 Score=61.22 Aligned_cols=39 Identities=28% Similarity=0.757 Sum_probs=23.8
Q ss_pred cccCcccccCCccceeecCCCccccHhhHHHHhcC----CCccc
Q 045853 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD----HSTCP 161 (184)
Q Consensus 122 C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP 161 (184)
|+||.+ |.+++..++.++|||+|+.+|+++++.. ..+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 8777777766679999999999999983 33576
No 27
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=5.2e-10 Score=87.54 Aligned_cols=84 Identities=24% Similarity=0.452 Sum_probs=55.7
Q ss_pred cccCcchhhhcccchHHHHHHhhhhcCCCCcc--cCCCCcccccCcccccCCccceeecCCCcc-ccHhhHHHHhcCCCc
Q 045853 83 VKEDPRASKFKKVSWTAFKRDIINNKSHQNDD--AVNKTSTCVICLEEFRDGDECKVRSKCNHI-FHQTCMDDWLDDHST 159 (184)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~Wl~~~~~ 159 (184)
.+..+++...+...+.......+..+..+..+ ..+...+|.||+.+-.+ .+++||+|. .|..|.+..--++++
T Consensus 252 ~~~~kQ~~~v~g~~y~LqEiyGien~~v~~~~~~~~~~gkeCVIClse~rd----t~vLPCRHLCLCs~Ca~~Lr~q~n~ 327 (349)
T KOG4265|consen 252 IKVLKQILWVDGTRYLLQEIYGIENSTVEGTDADESESGKECVICLSESRD----TVVLPCRHLCLCSGCAKSLRYQTNN 327 (349)
T ss_pred eeeeeeEEEEeCceeeeehhhccccCCCCCCccccccCCCeeEEEecCCcc----eEEecchhhehhHhHHHHHHHhhcC
Confidence 33344444444444444443333333332222 33557899999999988 555579997 999999998778889
Q ss_pred ccccccccccc
Q 045853 160 CPLCRGRVRRI 170 (184)
Q Consensus 160 CP~CR~~i~~~ 170 (184)
||+||+++..-
T Consensus 328 CPICRqpi~~l 338 (349)
T KOG4265|consen 328 CPICRQPIEEL 338 (349)
T ss_pred CCccccchHhh
Confidence 99999998643
No 28
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.85 E-value=5.6e-10 Score=68.88 Aligned_cols=49 Identities=29% Similarity=0.712 Sum_probs=24.4
Q ss_pred cccccCcccccCCccc--eee--cCCCccccHhhHHHHhcC---C--------Ccccccccccc
Q 045853 120 STCVICLEEFRDGDEC--KVR--SKCNHIFHQTCMDDWLDD---H--------STCPLCRGRVR 168 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~--~~l--~~C~H~FH~~Ci~~Wl~~---~--------~~CP~CR~~i~ 168 (184)
.+|.||+....+++++ .+. ..|++.||..|+.+||.. . .+||.|+++|.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 4799999997744433 223 268899999999999971 1 24999999884
No 29
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.5e-09 Score=88.44 Aligned_cols=56 Identities=29% Similarity=0.649 Sum_probs=44.5
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHHhc-----CCCcccccccccccccCCCCCCC
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD-----DHSTCPLCRGRVRRIAWPSFTTA 178 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~i~~~~~~~~~~~ 178 (184)
+..|+|||++... ..++.|||+||..||-++|. ....||+||..|...++..-...
T Consensus 186 ~~~CPICL~~~~~----p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e 246 (513)
T KOG2164|consen 186 DMQCPICLEPPSV----PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIE 246 (513)
T ss_pred CCcCCcccCCCCc----ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeec
Confidence 5689999999877 55567999999999998886 34679999999987665444333
No 30
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.5e-09 Score=81.70 Aligned_cols=52 Identities=31% Similarity=0.680 Sum_probs=43.6
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHH-HhcCCCc-ccccccccccccC
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDD-WLDDHST-CPLCRGRVRRIAW 172 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~-Wl~~~~~-CP~CR~~i~~~~~ 172 (184)
..+..|+||++.... ....+|||+||..||-. |=.++.. ||+||+...+.+.
T Consensus 213 ~~d~kC~lC~e~~~~----ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPEV----PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccCC----cccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 345689999999888 66668999999999999 8776666 9999999876654
No 31
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.78 E-value=8.3e-10 Score=85.60 Aligned_cols=55 Identities=25% Similarity=0.543 Sum_probs=47.9
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccccCCCCCCC
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAWPSFTTA 178 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~~~~~~~ 178 (184)
..|.||.+.|.. +++.+|+|.||.-||..+|..+..||.|+..+.+..+..-++-
T Consensus 24 LRC~IC~eyf~i----p~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il 78 (442)
T KOG0287|consen 24 LRCGICFEYFNI----PMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRIL 78 (442)
T ss_pred HHHhHHHHHhcC----ceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHH
Confidence 379999999998 7777899999999999999999999999999987776655443
No 32
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.77 E-value=5.9e-09 Score=59.66 Aligned_cols=42 Identities=33% Similarity=0.952 Sum_probs=31.4
Q ss_pred ccccCcccccCCccceeecCCC-----ccccHhhHHHHhc--CCCcccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCN-----HIFHQTCMDDWLD--DHSTCPLCR 164 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~-----H~FH~~Ci~~Wl~--~~~~CP~CR 164 (184)
.|.||++. .+++...+. ||. |.+|..|+.+|+. .+.+||+|+
T Consensus 1 ~CrIC~~~-~~~~~~l~~-PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GDEGDPLVS-PCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCC-CCCCCeeEe-ccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 38999993 333443455 485 9999999999995 456899995
No 33
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.5e-09 Score=60.20 Aligned_cols=46 Identities=30% Similarity=0.695 Sum_probs=38.2
Q ss_pred cccccCcccccCCccceeecCCCcc-ccHhhHHHHhc-CCCccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHI-FHQTCMDDWLD-DHSTCPLCRGRVRR 169 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~Wl~-~~~~CP~CR~~i~~ 169 (184)
++|.||++.-.+ .++..|||. ++.+|--+.++ .+..||+||++|..
T Consensus 8 dECTICye~pvd----sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPVD----SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred cceeeeccCcch----HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 689999999887 555669997 99999766665 78899999999853
No 34
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=5.8e-09 Score=84.54 Aligned_cols=53 Identities=34% Similarity=0.827 Sum_probs=40.0
Q ss_pred CCCCcccccCcccccCC----------ccc---eeecCCCccccHhhHHHHhc-CCCcccccccccc
Q 045853 116 VNKTSTCVICLEEFRDG----------DEC---KVRSKCNHIFHQTCMDDWLD-DHSTCPLCRGRVR 168 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~----------~~~---~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~ 168 (184)
.+....|+||+.+..-- +.+ ..+.||.|+||..|+.+|.. .+-.||+||.++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 34556799999887621 111 13447999999999999999 5668999999884
No 35
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.70 E-value=1.6e-08 Score=78.72 Aligned_cols=57 Identities=19% Similarity=0.504 Sum_probs=41.5
Q ss_pred CcccccCccc-ccCCccceeecCCCccccHhhHHHHh-cCCCcccccccccccccCCCC
Q 045853 119 TSTCVICLEE-FRDGDECKVRSKCNHIFHQTCMDDWL-DDHSTCPLCRGRVRRIAWPSF 175 (184)
Q Consensus 119 ~~~C~ICl~~-~~~~~~~~~l~~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~i~~~~~~~~ 175 (184)
+..|++|..+ |...+......+|||.||..|++..+ .....||.|+..+....+...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q 61 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQ 61 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccc
Confidence 3579999996 44444322222699999999999966 456689999999987765543
No 36
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.68 E-value=5.7e-09 Score=79.47 Aligned_cols=53 Identities=23% Similarity=0.510 Sum_probs=47.2
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccccCCCCCC
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAWPSFTT 177 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~~~~~~ 177 (184)
.|-||-+.+.. +.+.+|||.||.-||...|..+..||+||.+.....+++...
T Consensus 27 rC~IC~~~i~i----p~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~ 79 (391)
T COG5432 27 RCRICDCRISI----PCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSG 79 (391)
T ss_pred Hhhhhhheeec----ceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccchh
Confidence 69999999988 887889999999999999999999999999987777666543
No 37
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.67 E-value=1.2e-08 Score=82.01 Aligned_cols=53 Identities=34% Similarity=0.805 Sum_probs=42.0
Q ss_pred ccCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccc
Q 045853 114 DAVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 114 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
....+-.+|++||+.+.++..-.+...|.|.||..|+..|.. .+||+||.-..
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 334566789999999998764333335999999999999954 78999998665
No 38
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=9.8e-09 Score=66.16 Aligned_cols=29 Identities=38% Similarity=0.898 Sum_probs=26.6
Q ss_pred CCCccccHhhHHHHhcCCCcccccccccc
Q 045853 140 KCNHIFHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 140 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
.|+|.||..||.+||+.+..||+|.++-.
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 69999999999999999999999988653
No 39
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.61 E-value=3.8e-08 Score=61.32 Aligned_cols=48 Identities=25% Similarity=0.459 Sum_probs=38.3
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcC-CCccccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD-HSTCPLCRGRVRRIA 171 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~~ 171 (184)
..|+|+.+-|.+ ++..++||+|-..||..|+.. +.+||+|++++....
T Consensus 5 f~CpIt~~lM~d----PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~ 53 (73)
T PF04564_consen 5 FLCPITGELMRD----PVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESD 53 (73)
T ss_dssp GB-TTTSSB-SS----EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGG
T ss_pred cCCcCcCcHhhC----ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCccc
Confidence 479999999999 777789999999999999998 899999999987654
No 40
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.1e-08 Score=79.21 Aligned_cols=48 Identities=31% Similarity=0.926 Sum_probs=35.8
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhc---CCCccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD---DHSTCPLCRGRV 167 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~i 167 (184)
..|.||.+-+....++--.-.|||+||..|+.+|+. .+++||+||-.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 379999555555445544435999999999999998 347899999443
No 41
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.55 E-value=1.8e-08 Score=87.38 Aligned_cols=55 Identities=27% Similarity=0.751 Sum_probs=40.7
Q ss_pred cccCCCCcccccCcccccC-Cccce--eecCCCccccHhhHHHHhc--CCCccccccccc
Q 045853 113 DDAVNKTSTCVICLEEFRD-GDECK--VRSKCNHIFHQTCMDDWLD--DHSTCPLCRGRV 167 (184)
Q Consensus 113 ~~~~~~~~~C~ICl~~~~~-~~~~~--~l~~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~i 167 (184)
....+...+|+||+.-... +-.++ .++.|+|.||..|+.+|++ .+.+||+||..+
T Consensus 1463 ~~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1463 DEKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred hhhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 3445677899999987662 11111 2335889999999999998 577899999776
No 42
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.9e-07 Score=72.30 Aligned_cols=46 Identities=37% Similarity=0.832 Sum_probs=38.6
Q ss_pred CCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccc
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRG 165 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 165 (184)
..+...|+||++.|... .+.+|||.|+..|+..++.....||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p----~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP----VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcC----ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 34556899999999995 44579999999999999986668999993
No 43
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.1e-07 Score=79.44 Aligned_cols=49 Identities=24% Similarity=0.697 Sum_probs=42.3
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhc-CCCcccccccccccccC
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD-DHSTCPLCRGRVRRIAW 172 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~~~ 172 (184)
..|+.|-+...+ .+.+.|||+||.+|+..-+. +++.||.|...+...++
T Consensus 644 LkCs~Cn~R~Kd----~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 644 LKCSVCNTRWKD----AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV 693 (698)
T ss_pred eeCCCccCchhh----HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 369999988888 77778999999999999996 78899999998865554
No 44
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=4.9e-07 Score=71.87 Aligned_cols=59 Identities=27% Similarity=0.699 Sum_probs=44.2
Q ss_pred CCCcccccCcccccCCc----cceeecCCCccccHhhHHHHhc--C-----CCcccccccccccccCCCC
Q 045853 117 NKTSTCVICLEEFRDGD----ECKVRSKCNHIFHQTCMDDWLD--D-----HSTCPLCRGRVRRIAWPSF 175 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~----~~~~l~~C~H~FH~~Ci~~Wl~--~-----~~~CP~CR~~i~~~~~~~~ 175 (184)
..+.+|.||++...+.. ...++|+|.|.|+..||..|-. + .+.||.||..........+
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~ 228 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSF 228 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccce
Confidence 55778999999876532 1235688999999999999984 3 4679999998765544433
No 45
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=98.25 E-value=2.8e-07 Score=70.62 Aligned_cols=54 Identities=31% Similarity=0.821 Sum_probs=44.2
Q ss_pred ccCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhc-----------------------CCCcccccccccc
Q 045853 114 DAVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD-----------------------DHSTCPLCRGRVR 168 (184)
Q Consensus 114 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-----------------------~~~~CP~CR~~i~ 168 (184)
+..-....|.|||.-|.+++...+. .|.|.||..|+.++|. ....||+||..|.
T Consensus 110 ~nn~p~gqCvICLygfa~~~~ft~T-~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 110 ENNHPNGQCVICLYGFASSPAFTVT-ACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred cCCCCCCceEEEEEeecCCCceeee-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 3445667899999999999987777 4999999999988876 1234999999885
No 46
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=6.6e-07 Score=71.32 Aligned_cols=50 Identities=34% Similarity=0.959 Sum_probs=38.9
Q ss_pred CCcccccCcccccCC-ccceeecCCCccccHhhHHHHhcC--CCccccccccc
Q 045853 118 KTSTCVICLEEFRDG-DECKVRSKCNHIFHQTCMDDWLDD--HSTCPLCRGRV 167 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~-~~~~~l~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~i 167 (184)
.+..|+||++.+.-. +...+.+.|||.|-.+||+.|+.+ ...||.|..+-
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 346899999999854 444456689999999999999962 34599998653
No 47
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.21 E-value=2.9e-07 Score=78.63 Aligned_cols=57 Identities=26% Similarity=0.503 Sum_probs=44.2
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccccCCCCCCC
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAWPSFTTA 178 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~~~~~~~ 178 (184)
.|++|+..+.+....-.. +|+|.||..||..|-+.-.+||+||..+....+..++..
T Consensus 125 ~CP~Ci~s~~DqL~~~~k-~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~eS~~~ 181 (1134)
T KOG0825|consen 125 QCPNCLKSCNDQLEESEK-HTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVLESTGI 181 (1134)
T ss_pred hhhHHHHHHHHHhhcccc-ccccccHHHHhhhhhhhcccCchhhhhhheeeeeccccc
Confidence 466666666654443334 599999999999999999999999999887776666554
No 48
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=8.4e-07 Score=68.18 Aligned_cols=49 Identities=24% Similarity=0.533 Sum_probs=39.6
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHHhcC-CCccccccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD-HSTCPLCRGRVRRIA 171 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~~ 171 (184)
..+|+||+....- ++-++|+|.|+..||+--..+ +.+|++||.+|...-
T Consensus 7 ~~eC~IC~nt~n~----Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 7 KKECLICYNTGNC----PVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CCcceeeeccCCc----CccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 3589999999877 555679999999999887664 556999999996543
No 49
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.13 E-value=5e-07 Score=53.66 Aligned_cols=44 Identities=32% Similarity=0.852 Sum_probs=23.3
Q ss_pred ccccCcccccCCcccee-ecCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 121 TCVICLEEFRDGDECKV-RSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~-l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
.|++|.+-+.+ ++ +..|.|+|++.||..-+. ..||+|+.+--..
T Consensus 9 rCs~C~~~l~~----pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~q 53 (65)
T PF14835_consen 9 RCSICFDILKE----PVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQ 53 (65)
T ss_dssp S-SSS-S--SS-----B---SSS--B-TTTGGGGTT--TB-SSS--B-S-S
T ss_pred CCcHHHHHhcC----CceeccCccHHHHHHhHHhcC--CCCCCcCChHHHH
Confidence 69999999988 54 458999999999988654 4599999876433
No 50
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=7.7e-07 Score=69.77 Aligned_cols=52 Identities=25% Similarity=0.565 Sum_probs=42.2
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHHHhc-CCCccccccccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD-DHSTCPLCRGRVRRIA 171 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~~ 171 (184)
..+..|+|||+-+... +..+.|.|.||.+||..-++ .+++||.||+.+....
T Consensus 41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 3345799999998873 44557999999999988886 6788999999987654
No 51
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.99 E-value=2.8e-06 Score=67.51 Aligned_cols=49 Identities=31% Similarity=0.653 Sum_probs=38.6
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcC--CCcccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD--HSTCPLCRGRVR 168 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~i~ 168 (184)
..|..|-+.+-..++-...+||.|+||..|+...|.+ .++||.||+-..
T Consensus 366 L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 366 LYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred hhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 4699999998866554444579999999999999975 467999995443
No 52
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=1.5e-05 Score=58.98 Aligned_cols=51 Identities=24% Similarity=0.686 Sum_probs=43.3
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHHhcC--------CCccccccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD--------HSTCPLCRGRVRRIA 171 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~--------~~~CP~CR~~i~~~~ 171 (184)
+..|..|-..+..+|.+|+. |-|+||..|+++|--+ ...||-|.++|.+..
T Consensus 50 ~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~ 108 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI 108 (299)
T ss_pred CCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence 34799999999999999975 9999999999999762 345999999997654
No 53
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=1.5e-05 Score=64.78 Aligned_cols=49 Identities=31% Similarity=0.748 Sum_probs=43.4
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
..+.+|.||+..+.. ++..+|||.|+..||++-+.....||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~----pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYP----PVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCC----CccccccccccHHHHHHHhccCCCCccccccccc
Confidence 566789999999888 6666899999999999988888899999998875
No 54
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.77 E-value=1.3e-05 Score=72.93 Aligned_cols=56 Identities=27% Similarity=0.725 Sum_probs=43.1
Q ss_pred cCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcC----------CCccccccccccccc
Q 045853 115 AVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD----------HSTCPLCRGRVRRIA 171 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----------~~~CP~CR~~i~~~~ 171 (184)
....++.|.||+.+--.......+ .|+|+||.+|..+-|.+ -..||+|+.+|....
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL-~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQL-DCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIV 3547 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceec-CCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHH
Confidence 345567899999997776665666 69999999999887763 235999999886543
No 55
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=97.74 E-value=1.9e-05 Score=54.11 Aligned_cols=45 Identities=22% Similarity=0.559 Sum_probs=33.5
Q ss_pred CcccccCcccccCCccceeecCCC------ccccHhhHHHHhcCCCcccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCN------HIFHQTCMDDWLDDHSTCPLCR 164 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~------H~FH~~Ci~~Wl~~~~~CP~CR 164 (184)
..+|+||++...+++.+...+ || |.||.+|+.+|-+.+++=|.=|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR 76 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRERNRDPFNR 76 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhccCCCccc
Confidence 358999999999966666665 76 9999999999954333334333
No 56
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=1.1e-05 Score=61.90 Aligned_cols=43 Identities=33% Similarity=0.768 Sum_probs=35.2
Q ss_pred CcccccCcccccCCccceeecCCCcc-ccHhhHHHHhcCCCccccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHI-FHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
..-|+||++.-.+ .++++|||. -|.+|-... +.||+||+.|..
T Consensus 300 ~~LC~ICmDaP~D----CvfLeCGHmVtCt~CGkrm----~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRD----CVFLECGHMVTCTKCGKRM----NECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcc----eEEeecCcEEeehhhcccc----ccCchHHHHHHH
Confidence 5679999999988 666689994 888887554 479999998864
No 57
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.68 E-value=2e-05 Score=64.44 Aligned_cols=52 Identities=31% Similarity=0.816 Sum_probs=44.2
Q ss_pred CCCCcccccCcccccCCccceee-cCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 116 VNKTSTCVICLEEFRDGDECKVR-SKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l-~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
..++..|++|...+.+ ++. ..|||.|+..|+..|+..+..||.|+..+....
T Consensus 18 ~~~~l~C~~C~~vl~~----p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRD----PVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred CcccccCccccccccC----CCCCCCCCCcccccccchhhccCcCCcccccccchhh
Confidence 4555689999999998 555 379999999999999999999999998876544
No 58
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.67 E-value=1.9e-05 Score=63.04 Aligned_cols=47 Identities=34% Similarity=0.950 Sum_probs=37.7
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhc--CCCccccccccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD--DHSTCPLCRGRVRRIA 171 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~i~~~~ 171 (184)
-|-||-+.=.+ +.+. +|||..|..|+..|-. ..++||.||..|....
T Consensus 371 LCKICaendKd---vkIE-PCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDKD---VKIE-PCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCCC---cccc-cccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 59999886444 5666 5999999999999974 3678999999986443
No 59
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=97.65 E-value=3.3e-05 Score=43.67 Aligned_cols=40 Identities=28% Similarity=0.913 Sum_probs=27.8
Q ss_pred cccCcccccCCccceeecCCC-----ccccHhhHHHHhc--CCCccccc
Q 045853 122 CVICLEEFRDGDECKVRSKCN-----HIFHQTCMDDWLD--DHSTCPLC 163 (184)
Q Consensus 122 C~ICl~~~~~~~~~~~l~~C~-----H~FH~~Ci~~Wl~--~~~~CP~C 163 (184)
|-||++.-.+++.+. . ||+ ...|..|+.+|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~~li-~-pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLI-S-PCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE---SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCcee-c-ccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 779999988766322 3 464 4799999999997 66779987
No 60
>PHA02862 5L protein; Provisional
Probab=97.62 E-value=3.7e-05 Score=53.06 Aligned_cols=45 Identities=24% Similarity=0.736 Sum_probs=34.4
Q ss_pred cccccCcccccCCccceeecCCC-----ccccHhhHHHHhc--CCCccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCN-----HIFHQTCMDDWLD--DHSTCPLCRGRVRR 169 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~-----H~FH~~Ci~~Wl~--~~~~CP~CR~~i~~ 169 (184)
+.|-||.++-.+ .+ - ||+ ..-|.+|+.+|+. ++..||+||.+..-
T Consensus 3 diCWIC~~~~~e--~~--~-PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDE--RN--N-FCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCC--Cc--c-cccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 479999998543 22 3 354 6799999999997 56779999998753
No 61
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.51 E-value=6.5e-05 Score=44.26 Aligned_cols=39 Identities=31% Similarity=0.784 Sum_probs=26.8
Q ss_pred cccccCcccccCCccceee-cCCCccccHhhHHHHhc--CCCcccc
Q 045853 120 STCVICLEEFRDGDECKVR-SKCNHIFHQTCMDDWLD--DHSTCPL 162 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l-~~C~H~FH~~Ci~~Wl~--~~~~CP~ 162 (184)
..|+|.+..|.+ ++. ..|||+|-++.|.+|++ ....||+
T Consensus 12 ~~CPiT~~~~~~----PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 12 LKCPITLQPFED----PVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp SB-TTTSSB-SS----EEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred cCCCCcCChhhC----CcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 479999999987 433 37999999999999994 4556998
No 62
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.30 E-value=9.3e-05 Score=53.82 Aligned_cols=44 Identities=23% Similarity=0.582 Sum_probs=39.1
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
.|.||-.+|.. ++...|||.||..|.-.=.+...+|-+|-+...
T Consensus 198 ~C~iCKkdy~s----pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 198 LCGICKKDYES----PVVTECGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred eehhchhhccc----hhhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence 69999999999 777789999999999888888889999977553
No 63
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=97.30 E-value=0.00035 Score=49.23 Aligned_cols=52 Identities=23% Similarity=0.729 Sum_probs=36.4
Q ss_pred CCCCcccccCcccccCCccceeecCCCc---cccHhhHHHHhc--CCCcccccccccccc
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNH---IFHQTCMDDWLD--DHSTCPLCRGRVRRI 170 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H---~FH~~Ci~~Wl~--~~~~CP~CR~~i~~~ 170 (184)
...+..|-||.++..+ ...-. .|.. .-|.+|+++|+. +...|++|+.+..-.
T Consensus 5 s~~~~~CRIC~~~~~~--~~~PC-~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 5 SLMDKCCWICKDEYDV--VTNYC-NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCCeeEecCCCCCC--ccCCc-ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 4455689999988542 22211 3444 579999999997 466799999987543
No 64
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=97.26 E-value=0.00031 Score=39.53 Aligned_cols=45 Identities=29% Similarity=0.716 Sum_probs=23.3
Q ss_pred cccCcccccCCccceeec-CCCccccHhhHHHHhc-CCCccccccccc
Q 045853 122 CVICLEEFRDGDECKVRS-KCNHIFHQTCMDDWLD-DHSTCPLCRGRV 167 (184)
Q Consensus 122 C~ICl~~~~~~~~~~~l~-~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i 167 (184)
|++|.+++...+. ...| +||+..+..|...-+. ....||-||++.
T Consensus 1 cp~C~e~~d~~d~-~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDK-DFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCT-T--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCC-ccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7899999955443 3333 6899999999888886 578899999874
No 65
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=97.21 E-value=0.0015 Score=43.40 Aligned_cols=35 Identities=20% Similarity=0.663 Sum_probs=26.5
Q ss_pred cCCCCcccccCcccccCCccceeecCCCccccHhhHH
Q 045853 115 AVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMD 151 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~ 151 (184)
...++..|++|-..+..+ ...+. ||||+||..|++
T Consensus 74 ~i~~~~~C~vC~k~l~~~-~f~~~-p~~~v~H~~C~~ 108 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNS-VFVVF-PCGHVVHYSCIK 108 (109)
T ss_pred EECCCCCccCcCCcCCCc-eEEEe-CCCeEEeccccc
Confidence 345566899999999873 33334 699999999975
No 66
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.00064 Score=59.31 Aligned_cols=43 Identities=30% Similarity=0.709 Sum_probs=32.9
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRV 167 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i 167 (184)
...|..|-...+-. .+...|||.||.+|+. ..-..||-|+.+.
T Consensus 840 ~skCs~C~~~LdlP---~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDLP---FVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCccccc---eeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 35799998887752 2333599999999998 5566799999844
No 67
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.0003 Score=52.90 Aligned_cols=54 Identities=11% Similarity=0.329 Sum_probs=49.1
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccccCC
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAWP 173 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~~ 173 (184)
.-|++|-+.+.+.-.+.+|.+|||+|..+|++........||+|-.++...++.
T Consensus 222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 222 YICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDII 275 (303)
T ss_pred eecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceE
Confidence 469999999999988889999999999999999999999999999999876644
No 68
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.13 E-value=0.00011 Score=57.45 Aligned_cols=52 Identities=25% Similarity=0.643 Sum_probs=43.5
Q ss_pred CCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
.....+|.+|-..|.+...+. .|=|.||+.||-..|.....||.|...+-..
T Consensus 12 ~n~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred cccceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 344558999999999976655 4889999999999999999999999877543
No 69
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.11 E-value=0.00021 Score=59.30 Aligned_cols=51 Identities=25% Similarity=0.736 Sum_probs=41.4
Q ss_pred ccCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhc-----CCCcccccccccc
Q 045853 114 DAVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD-----DHSTCPLCRGRVR 168 (184)
Q Consensus 114 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~i~ 168 (184)
+......+|.+|-+.-++ .+...|.|.||.-|+.+++. .+.+||.|-..+.
T Consensus 531 ~enk~~~~C~lc~d~aed----~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 531 DENKGEVECGLCHDPAED----YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred ccccCceeecccCChhhh----hHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 444556789999998777 65667999999999999887 4678999988764
No 70
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=97.10 E-value=0.00031 Score=61.18 Aligned_cols=51 Identities=27% Similarity=0.742 Sum_probs=40.6
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHHHhcC-------CCccccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD-------HSTCPLCRGRV 167 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~~i 167 (184)
....+|.||++.+...+.+--...|-|+||..||..|-+. .=.||.|....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 3445899999999988877766678899999999999873 12499998543
No 71
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00054 Score=52.37 Aligned_cols=54 Identities=28% Similarity=0.509 Sum_probs=40.2
Q ss_pred CcccCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhc--CCCcccccccccc
Q 045853 112 NDDAVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD--DHSTCPLCRGRVR 168 (184)
Q Consensus 112 ~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~i~ 168 (184)
+......+.+|++|-+.-... -+..+|||+||..||..-+. ...+||.|-.+..
T Consensus 232 sss~~t~~~~C~~Cg~~PtiP---~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 232 SSSTGTSDTECPVCGEPPTIP---HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccccccCCceeeccCCCCCCC---eeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 344456677999999886651 12235999999999988766 3468999988775
No 72
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00069 Score=54.60 Aligned_cols=45 Identities=29% Similarity=0.674 Sum_probs=35.1
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhc--------CCCccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD--------DHSTCPLCRG 165 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~--------~~~~CP~CR~ 165 (184)
..|.||+++.....-...+ ||+|+||..|+..++. +.-+||-++-
T Consensus 185 f~C~ICf~e~~G~~c~~~l-pC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 185 FDCCICFEEQMGQHCFKFL-PCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred ccceeeehhhcCcceeeec-ccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 4799999998776665656 5999999999999987 2345887653
No 73
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0004 Score=55.06 Aligned_cols=50 Identities=30% Similarity=0.646 Sum_probs=34.3
Q ss_pred cccCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccc
Q 045853 113 DDAVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 113 ~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
.........|.||+++..+ ....+|||+-+ |..--.. ..+||+||+.|..
T Consensus 299 ~~~~~~p~lcVVcl~e~~~----~~fvpcGh~cc--ct~cs~~-l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKS----AVFVPCGHVCC--CTLCSKH-LPQCPVCRQRIRL 348 (355)
T ss_pred ccccCCCCceEEecCCccc----eeeecCCcEEE--chHHHhh-CCCCchhHHHHHH
Confidence 3344555679999999888 44446999855 5444333 3459999998853
No 74
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00066 Score=53.71 Aligned_cols=50 Identities=22% Similarity=0.453 Sum_probs=41.9
Q ss_pred CCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccc
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
..++..|+||+..-.. .+..||+|.-|..||.+-+-+.+.|=.|+..+..
T Consensus 419 ~sEd~lCpICyA~pi~----Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPIN----AVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred CcccccCcceecccch----hhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 3567789999987665 3444699999999999999999999999998763
No 75
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00034 Score=53.97 Aligned_cols=47 Identities=26% Similarity=0.554 Sum_probs=41.1
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
..|-||-..|.. ++...|||.||..|...=++....|++|-+.+...
T Consensus 242 f~c~icr~~f~~----pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 242 FKCFICRKYFYR----PVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS 288 (313)
T ss_pred cccccccccccc----chhhcCCceeehhhhccccccCCcceecccccccc
Confidence 359999999999 77778999999999999888889999999887543
No 76
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=96.92 E-value=0.00046 Score=53.35 Aligned_cols=45 Identities=31% Similarity=0.644 Sum_probs=39.4
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRG 165 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 165 (184)
.|+||.+.+-.+....-..+|||..|..|+......+-+||+|.+
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 499999998887766666679999999999999887799999988
No 77
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=96.90 E-value=0.00071 Score=47.66 Aligned_cols=33 Identities=30% Similarity=0.688 Sum_probs=23.7
Q ss_pred CcccccCcccccCCccceeecC------------CCc-cccHhhHHHHhc
Q 045853 119 TSTCVICLEEFRDGDECKVRSK------------CNH-IFHQTCMDDWLD 155 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~------------C~H-~FH~~Ci~~Wl~ 155 (184)
+..|+|||+--.+. +|+- |+- .-|.+|++++-+
T Consensus 2 d~~CpICme~PHNA----VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNA----VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCce----EEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 45799999988773 2222 442 469999999876
No 78
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=5.4e-05 Score=60.32 Aligned_cols=53 Identities=25% Similarity=0.622 Sum_probs=45.1
Q ss_pred CCcccccCcccccCC-ccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 118 KTSTCVICLEEFRDG-DECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~-~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
-...|+||.+.+... +.+-.+ .|||.+|.+|+..|+.....||.||..+...+
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~-~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAI-VCGHIYHHGKLSKWLATKRKLPSCRRELPKNG 248 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHH-hhcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence 345799999999987 676666 49999999999999998889999999886544
No 79
>PHA03096 p28-like protein; Provisional
Probab=96.85 E-value=0.00053 Score=53.56 Aligned_cols=46 Identities=28% Similarity=0.549 Sum_probs=33.0
Q ss_pred cccccCcccccCCc----cceeecCCCccccHhhHHHHhcC---CCccccccc
Q 045853 120 STCVICLEEFRDGD----ECKVRSKCNHIFHQTCMDDWLDD---HSTCPLCRG 165 (184)
Q Consensus 120 ~~C~ICl~~~~~~~----~~~~l~~C~H~FH~~Ci~~Wl~~---~~~CP~CR~ 165 (184)
..|.||++...... .--.++.|.|.|+..|+..|-.. +.+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 47999999876431 22357789999999999999862 334555544
No 80
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.81 E-value=0.0014 Score=50.87 Aligned_cols=61 Identities=13% Similarity=0.335 Sum_probs=47.5
Q ss_pred CCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccccCCCCCC
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAWPSFTT 177 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~~~~~~ 177 (184)
......|+|...+|........+.+|||+|-..++...- ....||+|-.++...++....+
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~Lnp 170 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIPLNP 170 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEEEecC
Confidence 344567999999997666667777899999999999983 3567999999988766544433
No 81
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.006 Score=47.95 Aligned_cols=51 Identities=14% Similarity=0.327 Sum_probs=38.5
Q ss_pred ccCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccc
Q 045853 114 DAVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRV 167 (184)
Q Consensus 114 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i 167 (184)
....+...|++|+..-.+... +.--|-+||..|+-..+.....||+=-.+.
T Consensus 295 ~l~~~~~~CpvClk~r~Nptv---l~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 295 LLPPDREVCPVCLKKRQNPTV---LEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred cCCCccccChhHHhccCCCce---EEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 334555689999999877422 222689999999999999999999855444
No 82
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.75 E-value=0.00053 Score=51.59 Aligned_cols=50 Identities=26% Similarity=0.626 Sum_probs=35.1
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccccCCC
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAWPS 174 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~~~ 174 (184)
.|.-|..--. .+...++ .|+|+||..|...-.. ..||+||+.+.-..+..
T Consensus 5 hCn~C~~~~~-~~~f~LT-aC~HvfC~~C~k~~~~--~~C~lCkk~ir~i~l~~ 54 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLT-ACRHVFCEPCLKASSP--DVCPLCKKSIRIIQLNR 54 (233)
T ss_pred EeccccccCC-CCceeee-echhhhhhhhcccCCc--cccccccceeeeeeccc
Confidence 5776665444 6665655 6999999999866533 38999999976554433
No 83
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.001 Score=52.42 Aligned_cols=48 Identities=31% Similarity=0.731 Sum_probs=39.1
Q ss_pred cccccCcccccCC--ccceeecCCCccccHhhHHHHhcC-CCccccccccc
Q 045853 120 STCVICLEEFRDG--DECKVRSKCNHIFHQTCMDDWLDD-HSTCPLCRGRV 167 (184)
Q Consensus 120 ~~C~ICl~~~~~~--~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i 167 (184)
.+|-||-++|..+ +.++..+.|||.|+..|+...+.. ...||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 4799999999977 445555679999999999888763 45699999985
No 84
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0011 Score=47.43 Aligned_cols=29 Identities=38% Similarity=1.100 Sum_probs=24.2
Q ss_pred CCCccccHhhHHHHhcC-----------CCcccccccccc
Q 045853 140 KCNHIFHQTCMDDWLDD-----------HSTCPLCRGRVR 168 (184)
Q Consensus 140 ~C~H~FH~~Ci~~Wl~~-----------~~~CP~CR~~i~ 168 (184)
.||.-||.-|+..||+. -..||.|..++.
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 69999999999999982 124999988874
No 85
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.00073 Score=47.65 Aligned_cols=31 Identities=35% Similarity=0.794 Sum_probs=26.9
Q ss_pred CCCCcccccCcccccCCccceeecCCCccccH
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQ 147 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~ 147 (184)
..+..||.||||++..+|++..|| |--+||+
T Consensus 174 ~ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred cccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 445579999999999999999885 9999996
No 86
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=96.45 E-value=0.0035 Score=36.12 Aligned_cols=33 Identities=30% Similarity=0.834 Sum_probs=29.8
Q ss_pred CCcccccCcccccCCccceeecCCCccccHhhH
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCM 150 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci 150 (184)
....|.+|-+.|.++|++.+.+.||-.+|..|-
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~ 36 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCW 36 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHH
Confidence 345799999999999999999999999999994
No 87
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.36 E-value=0.0018 Score=37.36 Aligned_cols=44 Identities=20% Similarity=0.433 Sum_probs=31.5
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
.|..|...-.. ..+.+|||+.+..|.+-+ +-+-||+|-+++...
T Consensus 9 ~~~~~~~~~~~----~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 9 PCVFCGFVGTK----GTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFD 52 (55)
T ss_pred eEEEccccccc----cccccccceeeccccChh--hccCCCCCCCcccCC
Confidence 45555544333 444569999999998776 556799999988644
No 88
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.30 E-value=0.004 Score=49.27 Aligned_cols=60 Identities=25% Similarity=0.543 Sum_probs=42.6
Q ss_pred cccCCCCcccccCcccccCCccceeecCCCccccHhhHHHH--hcCCCcccccccccccccCCCCC
Q 045853 113 DDAVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDW--LDDHSTCPLCRGRVRRIAWPSFT 176 (184)
Q Consensus 113 ~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~W--l~~~~~CP~CR~~i~~~~~~~~~ 176 (184)
++..+++.-|.||-+...- .-++||+|..|--|.-+. |..+..||+||..-...-+....
T Consensus 55 ddtDEen~~C~ICA~~~TY----s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~fT~~~ 116 (493)
T COG5236 55 DDTDEENMNCQICAGSTTY----SARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVVFTASS 116 (493)
T ss_pred cccccccceeEEecCCceE----EEeccCCchHHHHHHHHHHHHHhccCCCccccccceEEEecCC
Confidence 3444556679999988776 444579999999997543 44778899999976554444433
No 89
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=96.20 E-value=0.0036 Score=34.55 Aligned_cols=41 Identities=34% Similarity=0.918 Sum_probs=23.3
Q ss_pred cccCcccccCCccceeecCCCccccHhhHHHHhcCCC--ccccc
Q 045853 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHS--TCPLC 163 (184)
Q Consensus 122 C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~--~CP~C 163 (184)
|.+|-+-...+....-. .|+=.+|..|++.+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 56777776666554432 5888899999999998655 79987
No 90
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=0.018 Score=50.87 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=29.7
Q ss_pred ccCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhc
Q 045853 114 DAVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD 155 (184)
Q Consensus 114 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~ 155 (184)
.....+++|.+|...+...-- .+. +|||.||.+|+.+-..
T Consensus 812 ~v~ep~d~C~~C~~~ll~~pF-~vf-~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 812 RVLEPQDSCDHCGRPLLIKPF-YVF-PCGHCFHRDCLIRHVL 851 (911)
T ss_pred EEecCccchHHhcchhhcCcc-eee-eccchHHHHHHHHHHH
Confidence 345667789999988876422 233 6999999999987654
No 91
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.86 E-value=0.003 Score=55.13 Aligned_cols=55 Identities=25% Similarity=0.629 Sum_probs=40.6
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcC--CCcccccccccccccCCCCCCCC
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD--HSTCPLCRGRVRRIAWPSFTTAD 179 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~i~~~~~~~~~~~~ 179 (184)
..|.||++ . +...+. .|||.|+.+|+..-+.. ...||+||..+....+.+....+
T Consensus 455 ~~c~ic~~-~---~~~~it-~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~ 511 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFIT-RCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLP 511 (674)
T ss_pred cccccccc-c---ccceee-cccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhccccc
Confidence 68999999 2 222334 59999999999988863 34699999998877765544433
No 92
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.55 E-value=0.0063 Score=47.96 Aligned_cols=46 Identities=20% Similarity=0.565 Sum_probs=36.4
Q ss_pred CCCCcccccCcccccCCccceeecCC--CccccHhhHHHHhcCCCccccccccccc
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKC--NHIFHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C--~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
..+-.+|+||.+.+.. ++. +| ||+-|..|-. +....||.||.++..
T Consensus 45 ~~~lleCPvC~~~l~~----Pi~-QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSP----PIF-QCDNGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred chhhccCchhhccCcc----cce-ecCCCcEehhhhhh---hhcccCCcccccccc
Confidence 3445689999999998 766 58 5999999975 346789999998863
No 93
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=95.54 E-value=0.023 Score=45.80 Aligned_cols=54 Identities=20% Similarity=0.668 Sum_probs=34.4
Q ss_pred cCCCCcccccCcccccC-------------CccceeecC-----CCccccHhhHHHHhc-------------CCCccccc
Q 045853 115 AVNKTSTCVICLEEFRD-------------GDECKVRSK-----CNHIFHQTCMDDWLD-------------DHSTCPLC 163 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~-------------~~~~~~l~~-----C~H~FH~~Ci~~Wl~-------------~~~~CP~C 163 (184)
...+.+.|.=|+.+-.+ |...+..++ |.-..|.+|+.+|+. ++..||+|
T Consensus 267 ~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtC 346 (358)
T PF10272_consen 267 SGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTC 346 (358)
T ss_pred CccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCC
Confidence 44566678889875431 111112223 446679999999996 34469999
Q ss_pred ccccc
Q 045853 164 RGRVR 168 (184)
Q Consensus 164 R~~i~ 168 (184)
|+...
T Consensus 347 Ra~FC 351 (358)
T PF10272_consen 347 RAKFC 351 (358)
T ss_pred cccce
Confidence 99764
No 94
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.012 Score=45.56 Aligned_cols=58 Identities=21% Similarity=0.493 Sum_probs=43.4
Q ss_pred ccccCccc-ccCCccceeecCCCccccHhhHHHHhc-CCCcccccccccccccCCCCCCC
Q 045853 121 TCVICLEE-FRDGDECKVRSKCNHIFHQTCMDDWLD-DHSTCPLCRGRVRRIAWPSFTTA 178 (184)
Q Consensus 121 ~C~ICl~~-~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~~~~~~~~~ 178 (184)
.|++|-.+ |...+.....-+|||..|..|++..+. +...||-|-..+....+....-.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr~q~fE 61 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFRVQTFE 61 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccchhhcc
Confidence 48999866 555554444447999999999999986 66789999988877766554433
No 95
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.48 E-value=0.0078 Score=52.24 Aligned_cols=24 Identities=33% Similarity=0.989 Sum_probs=21.5
Q ss_pred cCCCccccHhhHHHHhcCCCcccc
Q 045853 139 SKCNHIFHQTCMDDWLDDHSTCPL 162 (184)
Q Consensus 139 ~~C~H~FH~~Ci~~Wl~~~~~CP~ 162 (184)
..|+|+.|..|...|++..-.||-
T Consensus 1046 g~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1046 GTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred ccccccccHHHHHHHHhcCCcCCC
Confidence 359999999999999998889984
No 96
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.0045 Score=52.72 Aligned_cols=42 Identities=26% Similarity=0.564 Sum_probs=35.4
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRG 165 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 165 (184)
.|.||+..|.......+.+.|||+.|..|+..-. +.+|| |+.
T Consensus 13 ~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~ 54 (861)
T KOG3161|consen 13 LCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKR 54 (861)
T ss_pred hchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCc
Confidence 6999999999887777778999999999998764 46788 654
No 97
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=95.34 E-value=0.013 Score=32.65 Aligned_cols=41 Identities=24% Similarity=0.659 Sum_probs=25.8
Q ss_pred cccCcccccCCccceeecCCC-ccccHhhHHHHhcCCCcccccccccc
Q 045853 122 CVICLEEFRDGDECKVRSKCN-HIFHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 122 C~ICl~~~~~~~~~~~l~~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
|--|+-+... .+ .|+ |..+..|+...+.+...||+|..++.
T Consensus 5 CKsCWf~~k~----Li--~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 5 CKSCWFANKG----LI--KCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp --SS-S--SS----EE--E-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred ChhhhhcCCC----ee--eecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 5556655444 33 486 99999999999999999999999874
No 98
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.32 E-value=0.014 Score=46.27 Aligned_cols=55 Identities=20% Similarity=0.466 Sum_probs=37.7
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHHHhc-CCCccccccccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD-DHSTCPLCRGRVRRIA 171 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~~ 171 (184)
.+++-|+.|++++...|+-..-.+||-..|.-|-...-+ -+.+||-||+......
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 344459999999998887665457996666666433322 3567999999775443
No 99
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.28 E-value=0.0087 Score=45.48 Aligned_cols=53 Identities=25% Similarity=0.653 Sum_probs=36.4
Q ss_pred cCCCCcccccCcccccCCccceeecCCC-----ccccHhhHHHHhcC--------CCccccccccc
Q 045853 115 AVNKTSTCVICLEEFRDGDECKVRSKCN-----HIFHQTCMDDWLDD--------HSTCPLCRGRV 167 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~-----H~FH~~Ci~~Wl~~--------~~~CP~CR~~i 167 (184)
+.+.+..|=||+..=+++-.--..-||. |..|..|+..|+.. ...||-|++..
T Consensus 16 ~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 16 NQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 3445567999998765543321222463 88999999999973 23599999875
No 100
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.039 Score=41.27 Aligned_cols=39 Identities=26% Similarity=0.629 Sum_probs=29.1
Q ss_pred cccCcccccCCccceeecCCCcc-ccHhhHHHHhcCCCcccccccccc
Q 045853 122 CVICLEEFRDGDECKVRSKCNHI-FHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 122 C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
|-.|-+.-.. .++.||.|+ +|..|-.. -..||+|+....
T Consensus 161 Cr~C~~~~~~----VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREAT----VLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCce----EEeecccceEeccccccc----CccCCCCcChhh
Confidence 8888776555 555579985 99999765 346999998764
No 101
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=95.01 E-value=0.029 Score=49.22 Aligned_cols=57 Identities=21% Similarity=0.535 Sum_probs=42.1
Q ss_pred cCCCCcccccCcccccCCccceeecCCC---ccccHhhHHHHhc--CCCccccccccccccc
Q 045853 115 AVNKTSTCVICLEEFRDGDECKVRSKCN---HIFHQTCMDDWLD--DHSTCPLCRGRVRRIA 171 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~---H~FH~~Ci~~Wl~--~~~~CP~CR~~i~~~~ 171 (184)
..+++..|-||..+=..++.+-.-.+|. ...|.+|+.+|+. ....|-+|+.++.=.+
T Consensus 8 mN~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 8 MNEDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD 69 (1175)
T ss_pred CCccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence 3455578999999988777765422343 4599999999997 5567999998875433
No 102
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=94.77 E-value=0.022 Score=45.18 Aligned_cols=52 Identities=25% Similarity=0.701 Sum_probs=38.3
Q ss_pred CcccccCcccccCCccceeecCCC-----ccccHhhHHHHhc--CCCcccccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCN-----HIFHQTCMDDWLD--DHSTCPLCRGRVRRI 170 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~-----H~FH~~Ci~~Wl~--~~~~CP~CR~~i~~~ 170 (184)
+..|-||.++...........+|. +..|..|++.|+. ++..|.+|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 467999999876543212233464 6789999999998 677899999876544
No 103
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=94.40 E-value=0.014 Score=43.98 Aligned_cols=57 Identities=21% Similarity=0.611 Sum_probs=41.2
Q ss_pred CcccccCccc-ccCCc-cceeecCCCccccHhhHHHHhc-CCCccc--ccccccccccCCCC
Q 045853 119 TSTCVICLEE-FRDGD-ECKVRSKCNHIFHQTCMDDWLD-DHSTCP--LCRGRVRRIAWPSF 175 (184)
Q Consensus 119 ~~~C~ICl~~-~~~~~-~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP--~CR~~i~~~~~~~~ 175 (184)
+..|++|-.+ |-..+ .+.+-|.|-|.+|..|+++.+. ....|| -|.+-+....+...
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~kf~~q 71 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKIKFIKQ 71 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHhccccc
Confidence 3479999977 44434 4445556999999999999997 567899 88776655555443
No 104
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.38 E-value=0.052 Score=42.33 Aligned_cols=43 Identities=26% Similarity=0.568 Sum_probs=33.4
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhc-CCCccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD-DHSTCPLCRG 165 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~ 165 (184)
..|+.|-.-....- ..+-|||.|+.+||..-|. ....||.|..
T Consensus 275 LkCplc~~Llrnp~---kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPM---KTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcc---cCccccchHHHHHHhhhhhhccccCCCccc
Confidence 57999988877632 2245899999999997764 6778999965
No 105
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=94.22 E-value=0.05 Score=37.61 Aligned_cols=7 Identities=14% Similarity=0.201 Sum_probs=2.5
Q ss_pred HHHHHHh
Q 045853 43 YLFTQLY 49 (184)
Q Consensus 43 ~~~~~~~ 49 (184)
+++.+++
T Consensus 20 ~~~~rRR 26 (130)
T PF12273_consen 20 YCHNRRR 26 (130)
T ss_pred HHHHHHH
Confidence 3333333
No 106
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=0.036 Score=45.45 Aligned_cols=38 Identities=26% Similarity=0.569 Sum_probs=28.6
Q ss_pred CCCcccccCcccccCC-ccceeecCCCccccHhhHHHHhc
Q 045853 117 NKTSTCVICLEEFRDG-DECKVRSKCNHIFHQTCMDDWLD 155 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~-~~~~~l~~C~H~FH~~Ci~~Wl~ 155 (184)
....+|.||+.+.... +.-. ...|+|.|+.+|..+.+.
T Consensus 144 ~~~~~C~iC~~e~~~~~~~f~-~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 144 LPKEECGICFVEDPEAEDMFS-VLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred cccccCccCccccccHhhhHH-HhcccchhhhHHhHHHhh
Confidence 3456899999555444 4544 446999999999998887
No 107
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.023 Score=44.44 Aligned_cols=46 Identities=33% Similarity=0.685 Sum_probs=31.0
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
.|.-|--.+.. --|.. +|+|+||.+|... ...+.||.|-..+.+..
T Consensus 92 fCd~Cd~PI~I--YGRmI-PCkHvFCl~CAr~--~~dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 92 FCDRCDFPIAI--YGRMI-PCKHVFCLECARS--DSDKICPLCDDRVQRIE 137 (389)
T ss_pred eecccCCccee--eeccc-ccchhhhhhhhhc--CccccCcCcccHHHHHH
Confidence 46666554433 22555 5999999999743 34568999988776543
No 108
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.57 E-value=0.02 Score=52.54 Aligned_cols=47 Identities=30% Similarity=0.655 Sum_probs=38.0
Q ss_pred CCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccc
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRV 167 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i 167 (184)
....|.||++.+..... + . .|||.++..|...|+..+..||+|+...
T Consensus 1152 ~~~~c~ic~dil~~~~~-I-~-~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGG-I-A-GCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred cccchHHHHHHHHhcCC-e-e-eechhHhhhHHHHHHHHhccCcchhhhh
Confidence 34479999999885332 2 2 4999999999999999999999998544
No 109
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.81 E-value=0.058 Score=41.91 Aligned_cols=29 Identities=21% Similarity=0.688 Sum_probs=23.3
Q ss_pred CCccccHhhHHHHhc-------------CCCccccccccccc
Q 045853 141 CNHIFHQTCMDDWLD-------------DHSTCPLCRGRVRR 169 (184)
Q Consensus 141 C~H~FH~~Ci~~Wl~-------------~~~~CP~CR~~i~~ 169 (184)
|+...|.+|+.+|+. ++.+||+||++..-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 567789999999986 45679999998743
No 110
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=92.62 E-value=0.033 Score=48.24 Aligned_cols=51 Identities=27% Similarity=0.758 Sum_probs=40.3
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcC---CCcccccccccccccCCC
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD---HSTCPLCRGRVRRIAWPS 174 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~i~~~~~~~ 174 (184)
.+|+||+..+.. +.+..|.|.|+..|+..-+.. ...||+|+..+.....+.
T Consensus 22 lEc~ic~~~~~~----p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~E 75 (684)
T KOG4362|consen 22 LECPICLEHVKE----PSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRE 75 (684)
T ss_pred ccCCceeEEeec----cchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccc
Confidence 489999999998 666689999999998776653 346999998876555443
No 111
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=92.42 E-value=0.1 Score=45.88 Aligned_cols=53 Identities=15% Similarity=0.286 Sum_probs=38.3
Q ss_pred CCCcccccCcccccCCcc-cee--ecCCCccccHhhHHHHhc------CCCccccccccccc
Q 045853 117 NKTSTCVICLEEFRDGDE-CKV--RSKCNHIFHQTCMDDWLD------DHSTCPLCRGRVRR 169 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~-~~~--l~~C~H~FH~~Ci~~Wl~------~~~~CP~CR~~i~~ 169 (184)
.+...|.+|..++.+.++ ... +-.|+|.||..||..|.. .+..|++|...+..
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 344578888888877332 222 225999999999999987 35569999987753
No 112
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=90.77 E-value=0.27 Score=33.95 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHh
Q 045853 35 LFLFYISYYLFTQLYSSRIQT 55 (184)
Q Consensus 35 ~~~~~i~~~~~~~~~~~r~~~ 55 (184)
+++++++++++.+.+++|+++
T Consensus 9 i~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 9 IVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 334444456666666666554
No 113
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=90.40 E-value=0.45 Score=27.53 Aligned_cols=47 Identities=23% Similarity=0.612 Sum_probs=35.4
Q ss_pred ccccCcccccCCccceeecCCCc--cccHhhHHHHhcCCCccccccccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNH--IFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H--~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
.|-.|-.++..+..-... |.+ .|+.+|.+.-|. ..||.|-..+.+.+
T Consensus 7 nCE~C~~dLp~~s~~A~I--CSfECTFC~~C~e~~l~--~~CPNCgGelv~RP 55 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYI--CSFECTFCADCAETMLN--GVCPNCGGELVRRP 55 (57)
T ss_pred CccccCCCCCCCCCcceE--EeEeCcccHHHHHHHhc--CcCcCCCCccccCC
Confidence 577888888776632322 764 699999999884 68999999887654
No 114
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=90.18 E-value=0.21 Score=37.27 Aligned_cols=41 Identities=32% Similarity=0.814 Sum_probs=29.2
Q ss_pred CcccccCccc-----ccCCccceeecCCCccccHhhHHHHhcCCCccccccc
Q 045853 119 TSTCVICLEE-----FRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRG 165 (184)
Q Consensus 119 ~~~C~ICl~~-----~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 165 (184)
+..|-+|-++ |+. +.+...+.|+-+||..|.. +..||-|-+
T Consensus 152 GfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 3468888753 222 3556677899999999975 267999954
No 115
>PF15050 SCIMP: SCIMP protein
Probab=89.50 E-value=0.76 Score=30.97 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 045853 16 LRLLVLTTPLVISSVVCLILF 36 (184)
Q Consensus 16 ~~~~~~~~~~~i~~~~~li~~ 36 (184)
..+|+++...++++.++|.++
T Consensus 6 ~nFWiiLAVaII~vS~~lglI 26 (133)
T PF15050_consen 6 DNFWIILAVAIILVSVVLGLI 26 (133)
T ss_pred hchHHHHHHHHHHHHHHHHHH
Confidence 456666555544444444333
No 116
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.34 E-value=0.12 Score=45.36 Aligned_cols=45 Identities=24% Similarity=0.543 Sum_probs=31.6
Q ss_pred CcccccCcccccCC----ccceeecCCCccccHhhHHHHhcCCCccccccc
Q 045853 119 TSTCVICLEEFRDG----DECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRG 165 (184)
Q Consensus 119 ~~~C~ICl~~~~~~----~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 165 (184)
+..|.-|.+..... +.+.++ .|||+||+.|+..-..++. |-.|..
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~-~c~h~yhk~c~~~~~~~~~-~~~~~~ 832 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVF-HCGHMYHKECLMMESLRNA-CNIESG 832 (846)
T ss_pred hhhhhhhcccccccCcccceeeEE-EccchhhhcccccHHHhcc-cChhhc
Confidence 34799999886633 344444 6999999999988776554 666544
No 117
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.73 E-value=0.22 Score=42.81 Aligned_cols=49 Identities=27% Similarity=0.796 Sum_probs=39.6
Q ss_pred cCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 115 AVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
.....+.|.||+.++ ..+..+ |. |..|+..|+..+..||+|+..+...+
T Consensus 475 l~~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 475 LREPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred hhcccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhccc
Confidence 345567899999999 236554 88 99999999999999999999886555
No 118
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=88.63 E-value=0.36 Score=27.59 Aligned_cols=43 Identities=28% Similarity=0.543 Sum_probs=21.6
Q ss_pred cccCcccccCCc------cceeecCCCccccHhhHHHHhcCCCcccccc
Q 045853 122 CVICLEEFRDGD------ECKVRSKCNHIFHQTCMDDWLDDHSTCPLCR 164 (184)
Q Consensus 122 C~ICl~~~~~~~------~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR 164 (184)
|.=|+..|.... .....+.|++.|+.+|=.---..-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 445666666542 3455778999999999433223456799883
No 119
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=88.39 E-value=5.5 Score=29.77 Aligned_cols=27 Identities=19% Similarity=0.471 Sum_probs=14.9
Q ss_pred CCccccHhhHHHHhc---CCCccccccccc
Q 045853 141 CNHIFHQTCMDDWLD---DHSTCPLCRGRV 167 (184)
Q Consensus 141 C~H~FH~~Ci~~Wl~---~~~~CP~CR~~i 167 (184)
|.|.||..=+...-. ....||.|+...
T Consensus 195 C~~C~hhngl~~~~ek~~~efiC~~Cn~~n 224 (251)
T COG5415 195 CPQCHHHNGLYRLAEKPIIEFICPHCNHKN 224 (251)
T ss_pred cccccccccccccccccchheecccchhhc
Confidence 666555433322222 234699999866
No 120
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=88.28 E-value=0.45 Score=32.74 Aligned_cols=53 Identities=19% Similarity=0.409 Sum_probs=36.8
Q ss_pred CCcccccCcccccCCccc-eeecCCCccccHhhHHHHhc---CCCccccccccccccc
Q 045853 118 KTSTCVICLEEFRDGDEC-KVRSKCNHIFHQTCMDDWLD---DHSTCPLCRGRVRRIA 171 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~-~~l~~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~i~~~~ 171 (184)
.-.+|.||-|...++--+ +-. =||=..+.-|-...|+ -+..||.|+.......
T Consensus 79 ~lYeCnIC~etS~ee~FLKPne-CCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNE-CCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCccc-ccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 446899999987664211 122 2887788888766666 5778999999876443
No 121
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=88.09 E-value=0.5 Score=37.54 Aligned_cols=56 Identities=25% Similarity=0.439 Sum_probs=42.1
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccccCCCC
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAWPSF 175 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~~~~ 175 (184)
..|+||.+.....+...+=-+|||..|..|...-...+.+||.||++......+..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~t~~s~ 305 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERNTKKSE 305 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccccCccccc
Confidence 68999999886554433222689889999988888899999999988765554443
No 122
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=88.08 E-value=0.17 Score=43.35 Aligned_cols=43 Identities=26% Similarity=0.724 Sum_probs=27.4
Q ss_pred CcccccCccc-----ccCCccceeecCCCccccHhhHHHHhcCCCccccccc
Q 045853 119 TSTCVICLEE-----FRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRG 165 (184)
Q Consensus 119 ~~~C~ICl~~-----~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 165 (184)
..-|.+|-.. |+ .+.++....|+++||..|.. ..+..||.|-+
T Consensus 511 gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~---r~s~~CPrC~R 558 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLR---RKSPCCPRCER 558 (580)
T ss_pred eeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHh---ccCCCCCchHH
Confidence 3457788322 22 34445555799999999954 34555999944
No 123
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=87.85 E-value=0.34 Score=37.32 Aligned_cols=50 Identities=24% Similarity=0.565 Sum_probs=37.0
Q ss_pred CcccccCcccccCCccceee---cCCCccccHhhHHHHhc---------CCCcccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVR---SKCNHIFHQTCMDDWLD---------DHSTCPLCRGRVR 168 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l---~~C~H~FH~~Ci~~Wl~---------~~~~CP~CR~~i~ 168 (184)
..+|-+|..++.+.+..+.. +.|+-++|..|+..-+. ....||.|++-+.
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 35899999999666655542 36788899999999443 2346999998553
No 124
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.43 E-value=0.45 Score=41.82 Aligned_cols=45 Identities=22% Similarity=0.433 Sum_probs=32.9
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccc--ccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPL--CRGRV 167 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~--CR~~i 167 (184)
.|.+|-.-...- ......|||.-|..|+.+|+..+..||. |-..-
T Consensus 781 ~CtVC~~vi~G~--~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~c 827 (839)
T KOG0269|consen 781 KCTVCDLVIRGV--DVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHLC 827 (839)
T ss_pred Cceeecceeeee--EeecccccccccHHHHHHHHhcCCCCccccCCccc
Confidence 477776655442 2345579999999999999998888887 64433
No 126
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.37 E-value=0.64 Score=35.58 Aligned_cols=59 Identities=12% Similarity=0.216 Sum_probs=43.0
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccccCCCCCC
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAWPSFTT 177 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~~~~~~ 177 (184)
.....|+|=--+|..--.-..+.+|||+|-..-+.+. ...+|++|-+.+...+.....+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvIvlNg 167 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVIVLNG 167 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeEeeCC
Confidence 3444699877777664444556689999999888776 3578999999987776554443
No 127
>PF13974 YebO: YebO-like protein
Probab=86.97 E-value=2.2 Score=26.76 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=13.0
Q ss_pred HHHHHHHhhHHHHhhhHHHHhhhhHHHH
Q 045853 42 YYLFTQLYSSRIQTQNQDIEQGLSSQQQ 69 (184)
Q Consensus 42 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 69 (184)
.|||.-+..-|.+.+..-.+.-.+++.+
T Consensus 14 vWFFVnRaSvRANEQI~LL~~ileqQKr 41 (80)
T PF13974_consen 14 VWFFVNRASVRANEQIELLEEILEQQKR 41 (80)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4444445555555554444444433333
No 128
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=86.68 E-value=0.3 Score=27.59 Aligned_cols=43 Identities=28% Similarity=0.613 Sum_probs=29.1
Q ss_pred cccCcccccCCccceeecCCCccccHhhHHHHhc------CCCccccccc
Q 045853 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD------DHSTCPLCRG 165 (184)
Q Consensus 122 C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~------~~~~CP~CR~ 165 (184)
|.||.. ..+++.+...-.|+..||..|+..=.. ..-.||.|+.
T Consensus 2 C~vC~~-~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQ-SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp BTTTTS-SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CcCCCC-cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 888988 334444455557888999999865543 2345888864
No 129
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=86.61 E-value=3.3 Score=27.68 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=19.4
Q ss_pred eeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 136 KVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 136 ~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
...|.|+|.. .-+.+...|+.||+++.-++
T Consensus 70 V~CP~C~K~T------KmLGr~D~CM~C~~pLTLd~ 99 (114)
T PF11023_consen 70 VECPNCGKQT------KMLGRVDACMHCKEPLTLDP 99 (114)
T ss_pred eECCCCCChH------hhhchhhccCcCCCcCccCc
Confidence 3456787732 24445567999999986443
No 130
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=86.28 E-value=2.2 Score=22.64 Aligned_cols=7 Identities=29% Similarity=0.610 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 045853 39 YISYYLF 45 (184)
Q Consensus 39 ~i~~~~~ 45 (184)
.+.+|.+
T Consensus 22 ~~~~YaC 28 (38)
T PF02439_consen 22 CMFYYAC 28 (38)
T ss_pred HHHHHHH
Confidence 3333333
No 131
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=85.96 E-value=0.49 Score=27.29 Aligned_cols=40 Identities=15% Similarity=0.415 Sum_probs=29.0
Q ss_pred cccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 122 C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
|+-|-..+..++.+... -|..||.+|+ +|-.|+++|....
T Consensus 1 C~~C~~~I~~~~~~~~~--~~~~~H~~Cf--------~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKA--MGKFWHPECF--------KCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEEEEE--TTEEEETTTS--------BETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEEEEe--CCcEEEcccc--------ccCCCCCccCCCe
Confidence 66777777765554322 6788999884 7999999887654
No 132
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=85.43 E-value=4.1 Score=22.56 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 045853 23 TPLVISSVVCLILFLFYISYYLFTQLYSSRI 53 (184)
Q Consensus 23 ~~~~i~~~~~li~~~~~i~~~~~~~~~~~r~ 53 (184)
+++-..+++++.++.+.+.+++++++..-|.
T Consensus 9 L~~~F~~lIC~Fl~~~~~F~~F~~Kqilfr~ 39 (54)
T PF06716_consen 9 LLLAFGFLICLFLFCLVVFIWFVYKQILFRN 39 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444444555555555555566666655443
No 133
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.28 E-value=0.78 Score=37.33 Aligned_cols=47 Identities=17% Similarity=0.420 Sum_probs=33.6
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCC---Cccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDH---STCPLCRGRV 167 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~i 167 (184)
..|+|=-+.-.++.. +..+.|||+...+-+.+..++. ..||.|=..-
T Consensus 335 F~CPVlKeqtsdeNP-Pm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 335 FICPVLKEQTSDENP-PMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred eecccchhhccCCCC-CeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 369985555554444 4444699999999999998754 4699995543
No 134
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=85.01 E-value=0.51 Score=24.95 Aligned_cols=26 Identities=38% Similarity=0.740 Sum_probs=17.3
Q ss_pred ccccCcccccCCcc-------ceeecCCCcccc
Q 045853 121 TCVICLEEFRDGDE-------CKVRSKCNHIFH 146 (184)
Q Consensus 121 ~C~ICl~~~~~~~~-------~~~l~~C~H~FH 146 (184)
+|+=|-..|...++ ....+.|+|+|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 68888888875553 223556778775
No 135
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=84.20 E-value=0.68 Score=38.24 Aligned_cols=34 Identities=24% Similarity=0.557 Sum_probs=28.4
Q ss_pred CCcccccCcccccCCccceeecCCCccccHhhHHHHhc
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD 155 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~ 155 (184)
++..|+||..-|.+ ++.++|+|..|..|...-+.
T Consensus 3 eelkc~vc~~f~~e----piil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 3 EELKCPVCGSFYRE----PIILPCSHNLCQACARNILV 36 (699)
T ss_pred ccccCceehhhccC----ceEeecccHHHHHHHHhhcc
Confidence 44579999999998 66567999999999987765
No 136
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=83.96 E-value=0.77 Score=23.78 Aligned_cols=37 Identities=22% Similarity=0.601 Sum_probs=25.4
Q ss_pred cccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccc
Q 045853 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 122 C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
|..|-..+..++..... =+..||.+|+ .|..|+..+.
T Consensus 2 C~~C~~~i~~~~~~~~~--~~~~~H~~Cf--------~C~~C~~~L~ 38 (39)
T smart00132 2 CAGCGKPIRGGELVLRA--LGKVWHPECF--------KCSKCGKPLG 38 (39)
T ss_pred ccccCCcccCCcEEEEe--CCccccccCC--------CCcccCCcCc
Confidence 77788877775333222 4688999884 6888887763
No 137
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=83.60 E-value=4.6 Score=32.04 Aligned_cols=27 Identities=15% Similarity=0.403 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045853 18 LLVLTTPLVISSVVCLILFLFYISYYL 44 (184)
Q Consensus 18 ~~~~~~~~~i~~~~~li~~~~~i~~~~ 44 (184)
..+..+++++++++++++++.+|+.|.
T Consensus 256 t~I~aSiiaIliIVLIMvIIYLILRYR 282 (299)
T PF02009_consen 256 TAIIASIIAILIIVLIMVIIYLILRYR 282 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444333333443333
No 138
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=83.03 E-value=0.7 Score=24.28 Aligned_cols=26 Identities=38% Similarity=0.730 Sum_probs=17.3
Q ss_pred ccccCcccccCCcc-c------eeecCCCcccc
Q 045853 121 TCVICLEEFRDGDE-C------KVRSKCNHIFH 146 (184)
Q Consensus 121 ~C~ICl~~~~~~~~-~------~~l~~C~H~FH 146 (184)
+|+=|...|..+|+ + ...+.|||+|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 68888888886553 1 23456778774
No 139
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=82.98 E-value=0.7 Score=34.40 Aligned_cols=41 Identities=27% Similarity=0.734 Sum_probs=33.2
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCR 164 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR 164 (184)
.|.+|-.-...+ +..-.||-.+|..|+...+++...||.|.
T Consensus 183 ~Cn~Ch~LvIqg---~rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 183 NCNLCHCLVIQG---IRCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHhHhHHHhhee---eccCcccchhhhHHHHHHhcccCcCCchh
Confidence 699998887664 22335777899999999999988999993
No 140
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=80.80 E-value=0.64 Score=28.05 Aligned_cols=35 Identities=20% Similarity=0.483 Sum_probs=19.0
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHh
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWL 154 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl 154 (184)
..|.+|...|.--..-.....||++|+..|.....
T Consensus 10 ~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 10 SNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 47999999997644434455799999999986554
No 141
>PTZ00370 STEVOR; Provisional
Probab=80.70 E-value=2.3 Score=33.26 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045853 24 PLVISSVVCLILFLFYISYYLFTQLYS 50 (184)
Q Consensus 24 ~~~i~~~~~li~~~~~i~~~~~~~~~~ 50 (184)
|.-|..+|++++++++|++|+|..++|
T Consensus 256 Pygiaalvllil~vvliilYiwlyrrR 282 (296)
T PTZ00370 256 PYGIAALVLLILAVVLIILYIWLYRRR 282 (296)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555666666666666777665544
No 142
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=80.51 E-value=0.89 Score=22.07 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=14.1
Q ss_pred ccccCcccccCCccceeecCCCccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIF 145 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~F 145 (184)
.|+-|-.....+. ...+.|||.|
T Consensus 2 ~CP~C~~~V~~~~--~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESA--KFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhc--CcCCCCCCCC
Confidence 4777776665432 3455688877
No 143
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.62 E-value=1.1 Score=37.49 Aligned_cols=36 Identities=28% Similarity=0.676 Sum_probs=28.7
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHHHhc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD 155 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~ 155 (184)
....+|.||.+.+.. . .....|||.|+..|....+.
T Consensus 68 ~~~~~c~ic~~~~~~--~-~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--E-IIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcc--h-hhhcCCCcHHHHHHHHHHhh
Confidence 344689999999987 2 33346999999999998887
No 144
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=79.53 E-value=2.3 Score=33.71 Aligned_cols=53 Identities=19% Similarity=0.537 Sum_probs=35.5
Q ss_pred CCCcccccCcccc--c-------------CCccceeecCCCccccHhhHHHHhc---------CCCccccccccccc
Q 045853 117 NKTSTCVICLEEF--R-------------DGDECKVRSKCNHIFHQTCMDDWLD---------DHSTCPLCRGRVRR 169 (184)
Q Consensus 117 ~~~~~C~ICl~~~--~-------------~~~~~~~l~~C~H~FH~~Ci~~Wl~---------~~~~CP~CR~~i~~ 169 (184)
....+|++|+..= . .+-..-...||||+--+.-..-|-+ -+..||.|-+.+..
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 3456899998642 1 1111112337999999999999987 24569999887753
No 145
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=79.41 E-value=13 Score=23.53 Aligned_cols=17 Identities=6% Similarity=0.428 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045853 28 SSVVCLILFLFYISYYL 44 (184)
Q Consensus 28 ~~~~~li~~~~~i~~~~ 44 (184)
..+++++++++|+.+.+
T Consensus 41 c~~lVfVii~lFi~ll~ 57 (84)
T PF06143_consen 41 CCFLVFVIIVLFILLLY 57 (84)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 146
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.18 E-value=2.1 Score=28.75 Aligned_cols=45 Identities=22% Similarity=0.425 Sum_probs=33.9
Q ss_pred cccccCcccccCC----------ccceeecCCCccccHhhHHHHhcCCCcccccc
Q 045853 120 STCVICLEEFRDG----------DECKVRSKCNHIFHQTCMDDWLDDHSTCPLCR 164 (184)
Q Consensus 120 ~~C~ICl~~~~~~----------~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR 164 (184)
..|.-|+..|... ......+.|++.|+.+|=.-+-..-.+||-|-
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 4699999988642 12234668999999999777767677899995
No 147
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=79.01 E-value=1.5 Score=29.74 Aligned_cols=47 Identities=19% Similarity=0.390 Sum_probs=29.2
Q ss_pred CCcccccCcccccCCc-cceeecCCCccccHhhHHHHhcCCC---cccccccc
Q 045853 118 KTSTCVICLEEFRDGD-ECKVRSKCNHIFHQTCMDDWLDDHS---TCPLCRGR 166 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~-~~~~l~~C~H~FH~~Ci~~Wl~~~~---~CP~CR~~ 166 (184)
.+..|++|...|.--. .-.....|+|.+|..|-.. ..+. .|-+|.+.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~--~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY--SKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE--TSSSCCEEEHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc--CCCCCCEEChhhHHH
Confidence 4458999999875322 2256678999999999644 2122 38888653
No 148
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=78.93 E-value=0.63 Score=37.93 Aligned_cols=24 Identities=38% Similarity=0.971 Sum_probs=0.0
Q ss_pred CCCccccHhhHHHHhc------CCCcccccccc
Q 045853 140 KCNHIFHQTCMDDWLD------DHSTCPLCRGR 166 (184)
Q Consensus 140 ~C~H~FH~~Ci~~Wl~------~~~~CP~CR~~ 166 (184)
.|||++-. ..|-. ..++||+||+.
T Consensus 308 ~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 308 NCGHVHGY---HNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ---------------------------------
T ss_pred cccceeee---cccccccccccccccCCCcccc
Confidence 69997332 14754 25679999974
No 149
>PF14979 TMEM52: Transmembrane 52
Probab=77.95 E-value=6.7 Score=27.53 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=21.7
Q ss_pred CCCCCC-CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045853 6 TPSTCP-NDEGLRLLVLTTPLVISSVVCLILFLFYISYYLFT 46 (184)
Q Consensus 6 ~~~~~~-~~~~~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~ 46 (184)
.+..|+ .+.-..+|.+++.++++++++|-.+.....-|+..
T Consensus 6 ~~e~C~~~~~W~~LWyIwLill~~~llLLCG~ta~C~rfCCl 47 (154)
T PF14979_consen 6 EPEMCPPQTRWSSLWYIWLILLIGFLLLLCGLTASCVRFCCL 47 (154)
T ss_pred ccccCCCccceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345576 55556666666666555555554444444443333
No 150
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=77.18 E-value=2 Score=24.67 Aligned_cols=36 Identities=22% Similarity=0.487 Sum_probs=27.0
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD 155 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~ 155 (184)
..|.+|-..|.....-.....||++|+..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 369999988887544444557999999999876654
No 151
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=76.90 E-value=1.4 Score=26.44 Aligned_cols=12 Identities=25% Similarity=0.899 Sum_probs=8.9
Q ss_pred cccHhhHHHHhc
Q 045853 144 IFHQTCMDDWLD 155 (184)
Q Consensus 144 ~FH~~Ci~~Wl~ 155 (184)
-||..|+..|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999986
No 152
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=76.70 E-value=0.32 Score=32.10 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=4.3
Q ss_pred HHHHHHHHHHh
Q 045853 39 YISYYLFTQLY 49 (184)
Q Consensus 39 ~i~~~~~~~~~ 49 (184)
.+.||++.|.+
T Consensus 80 ~IyYFVILRer 90 (101)
T PF06024_consen 80 AIYYFVILRER 90 (101)
T ss_pred hheEEEEEecc
Confidence 33344444333
No 153
>PHA02650 hypothetical protein; Provisional
Probab=76.59 E-value=4.4 Score=25.19 Aligned_cols=8 Identities=0% Similarity=-0.521 Sum_probs=3.4
Q ss_pred ccchhHHH
Q 045853 13 DEGLRLLV 20 (184)
Q Consensus 13 ~~~~~~~~ 20 (184)
+.+..++.
T Consensus 44 ~~~~~~~~ 51 (81)
T PHA02650 44 VSWFNGQN 51 (81)
T ss_pred cCCchHHH
Confidence 33444433
No 154
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.65 E-value=1.4 Score=36.28 Aligned_cols=46 Identities=22% Similarity=0.451 Sum_probs=33.6
Q ss_pred CcccccCcccccCCcc--ceeecCCCccccHhhHHHHhcCCCccccccc
Q 045853 119 TSTCVICLEEFRDGDE--CKVRSKCNHIFHQTCMDDWLDDHSTCPLCRG 165 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~--~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 165 (184)
-..|+.|.-.++..+. ..... |||-|+..|...|...+..|..|-.
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~~r 353 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYECCR 353 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCccc
Confidence 3469988877765543 23444 8999999999999887777765544
No 155
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=75.61 E-value=1.7 Score=32.39 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045853 22 TTPLVISSVVCLILFLFYISYYLFTQL 48 (184)
Q Consensus 22 ~~~~~i~~~~~li~~~~~i~~~~~~~~ 48 (184)
+|.+++.+.++|+++++..+|+++.|+
T Consensus 102 lI~lv~~g~~lLla~~~~~~Y~~~~Rr 128 (202)
T PF06365_consen 102 LIALVTSGSFLLLAILLGAGYCCHQRR 128 (202)
T ss_pred EEehHHhhHHHHHHHHHHHHHHhhhhc
Confidence 344444444455555555555554433
No 156
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=73.67 E-value=21 Score=22.85 Aligned_cols=16 Identities=0% Similarity=0.173 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 045853 34 ILFLFYISYYLFTQLY 49 (184)
Q Consensus 34 i~~~~~i~~~~~~~~~ 49 (184)
++.++...+|-..+..
T Consensus 14 ~~~i~~y~~~k~~ka~ 29 (87)
T PF10883_consen 14 VALILAYLWWKVKKAK 29 (87)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444555555443
No 157
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.44 E-value=3.4 Score=31.66 Aligned_cols=38 Identities=18% Similarity=0.405 Sum_probs=31.0
Q ss_pred ccCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhc
Q 045853 114 DAVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD 155 (184)
Q Consensus 114 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~ 155 (184)
+...+.+.|+.||..+.+ ++..+=||+|..+||-+.+.
T Consensus 38 DsiK~FdcCsLtLqPc~d----Pvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQPCRD----PVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cccCCcceeeeecccccC----CccCCCCeeeeHHHHHHHHH
Confidence 334566789999999999 77666799999999988864
No 159
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=72.43 E-value=2.1 Score=21.92 Aligned_cols=20 Identities=25% Similarity=0.677 Sum_probs=12.0
Q ss_pred CCCccccHhhHHHHhcCCCccccccc
Q 045853 140 KCNHIFHQTCMDDWLDDHSTCPLCRG 165 (184)
Q Consensus 140 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 165 (184)
.|||++-..- ....||+|..
T Consensus 6 ~CGy~y~~~~------~~~~CP~Cg~ 25 (33)
T cd00350 6 VCGYIYDGEE------APWVCPVCGA 25 (33)
T ss_pred CCCCEECCCc------CCCcCcCCCC
Confidence 4666654432 3447999865
No 160
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=71.94 E-value=6.8 Score=24.68 Aligned_cols=13 Identities=8% Similarity=0.222 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHH
Q 045853 35 LFLFYISYYLFTQ 47 (184)
Q Consensus 35 ~~~~~i~~~~~~~ 47 (184)
.++++.+.+..++
T Consensus 19 aIvvW~iv~ieYr 31 (81)
T PF00558_consen 19 AIVVWTIVYIEYR 31 (81)
T ss_dssp HHHHHHHH-----
T ss_pred HHHHHHHHHHHHH
Confidence 3333333343333
No 161
>PF15050 SCIMP: SCIMP protein
Probab=71.51 E-value=11 Score=25.45 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 045853 30 VVCLILFLFYISYYLFTQLYS 50 (184)
Q Consensus 30 ~~~li~~~~~i~~~~~~~~~~ 50 (184)
++++.+.+-+|+|++.+++.|
T Consensus 16 II~vS~~lglIlyCvcR~~lR 36 (133)
T PF15050_consen 16 IILVSVVLGLILYCVCRWQLR 36 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333434445555555554443
No 162
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=71.38 E-value=2.4 Score=33.64 Aligned_cols=44 Identities=20% Similarity=0.487 Sum_probs=30.5
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcC---CCccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD---HSTCPLCRG 165 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~---~~~CP~CR~ 165 (184)
.|++=-+.-.+ +..++.+.|||+.-.+-++..-++ ...||.|-.
T Consensus 338 iCPVlKe~~t~-ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 338 ICPVLKELCTD-ENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eccccHhhhcc-cCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 58874444444 344555679999999999887763 345999944
No 163
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=70.43 E-value=3.7 Score=20.35 Aligned_cols=29 Identities=21% Similarity=0.444 Sum_probs=11.0
Q ss_pred ccccCcccccCCccceeecCCCccccHhhH
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCM 150 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci 150 (184)
.|.+|-..... +.......|+-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 47788877766 444556678888999985
No 164
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.36 E-value=0.68 Score=36.46 Aligned_cols=49 Identities=20% Similarity=0.462 Sum_probs=37.5
Q ss_pred CCcccccCcccccCC--ccceeecC--------CCccccHhhHHHHhcC-CCcccccccc
Q 045853 118 KTSTCVICLEEFRDG--DECKVRSK--------CNHIFHQTCMDDWLDD-HSTCPLCRGR 166 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~--~~~~~l~~--------C~H~FH~~Ci~~Wl~~-~~~CP~CR~~ 166 (184)
....|.||...|..+ ..++.... |||..+..|++.-+.+ ...||.||..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 335799999999943 33344445 9999999999999864 3689999975
No 165
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=70.30 E-value=17 Score=23.89 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=10.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 045853 14 EGLRLLVLTTPLVISSVVCLILF 36 (184)
Q Consensus 14 ~~~~~~~~~~~~~i~~~~~li~~ 36 (184)
.+-+-|-+++.++++.+++-+++
T Consensus 12 ~~g~sW~~LVGVv~~al~~SlLI 34 (102)
T PF15176_consen 12 EGGRSWPFLVGVVVTALVTSLLI 34 (102)
T ss_pred CCCcccHhHHHHHHHHHHHHHHH
Confidence 33445555555544444443333
No 166
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=69.86 E-value=9.6 Score=26.03 Aligned_cols=16 Identities=13% Similarity=-0.076 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhhHHH
Q 045853 38 FYISYYLFTQLYSSRI 53 (184)
Q Consensus 38 ~~i~~~~~~~~~~~r~ 53 (184)
+++++++++..+|+|.
T Consensus 78 Ig~Illi~y~irR~~K 93 (122)
T PF01102_consen 78 IGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3344556665554443
No 167
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=69.31 E-value=8.4 Score=24.55 Aligned_cols=7 Identities=14% Similarity=-0.178 Sum_probs=2.7
Q ss_pred HHhhHHH
Q 045853 47 QLYSSRI 53 (184)
Q Consensus 47 ~~~~~r~ 53 (184)
.+.|+|.
T Consensus 55 C~kRkrs 61 (94)
T PF05393_consen 55 CKKRKRS 61 (94)
T ss_pred HHHhhhc
Confidence 3333333
No 168
>PHA02819 hypothetical protein; Provisional
Probab=69.19 E-value=20 Score=21.78 Aligned_cols=11 Identities=9% Similarity=0.045 Sum_probs=5.0
Q ss_pred ccchhHHHHHH
Q 045853 13 DEGLRLLVLTT 23 (184)
Q Consensus 13 ~~~~~~~~~~~ 23 (184)
+.+..++.+++
T Consensus 41 ~~~~~~~~~ii 51 (71)
T PHA02819 41 KKSFLRYYLII 51 (71)
T ss_pred cCChhHHHHHH
Confidence 44555544333
No 169
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=68.07 E-value=16 Score=27.76 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045853 23 TPLVISSVVCLILFLFYISYYLFTQL 48 (184)
Q Consensus 23 ~~~~i~~~~~li~~~~~i~~~~~~~~ 48 (184)
++++|+++++.+.++.++.+|...++
T Consensus 191 lpvvIaliVitl~vf~LvgLyr~C~k 216 (259)
T PF07010_consen 191 LPVVIALIVITLSVFTLVGLYRMCWK 216 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444444444444444444444433
No 170
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=67.23 E-value=15 Score=24.19 Aligned_cols=13 Identities=15% Similarity=-0.084 Sum_probs=6.9
Q ss_pred HHHHHHHHhhHHH
Q 045853 41 SYYLFTQLYSSRI 53 (184)
Q Consensus 41 ~~~~~~~~~~~r~ 53 (184)
..++..+.+++|.
T Consensus 35 ~c~c~~~~~r~r~ 47 (102)
T PF11669_consen 35 SCCCACRHRRRRR 47 (102)
T ss_pred HHHHHHHHHHHHH
Confidence 4556665555443
No 171
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=67.16 E-value=13 Score=28.22 Aligned_cols=10 Identities=40% Similarity=0.468 Sum_probs=4.3
Q ss_pred CCCCCCCccc
Q 045853 6 TPSTCPNDEG 15 (184)
Q Consensus 6 ~~~~~~~~~~ 15 (184)
.+++.|+.++
T Consensus 179 t~stspS~S~ 188 (259)
T PF07010_consen 179 TSSTSPSYSS 188 (259)
T ss_pred cccCCccccc
Confidence 3444454444
No 172
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.70 E-value=7 Score=23.91 Aligned_cols=48 Identities=21% Similarity=0.519 Sum_probs=31.6
Q ss_pred ccccCcccccCCccceeecCCC--ccccHhhHHHHhcCCCcccccccccccccC
Q 045853 121 TCVICLEEFRDGDECKVRSKCN--HIFHQTCMDDWLDDHSTCPLCRGRVRRIAW 172 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~--H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~ 172 (184)
.|--|-.++-.+..-... |. |.|+.+|...-|. ..||.|-..+...+.
T Consensus 7 nCECCDrDLpp~s~dA~I--CtfEcTFCadCae~~l~--g~CPnCGGelv~RP~ 56 (84)
T COG3813 7 NCECCDRDLPPDSTDARI--CTFECTFCADCAENRLH--GLCPNCGGELVARPI 56 (84)
T ss_pred CCcccCCCCCCCCCceeE--EEEeeehhHhHHHHhhc--CcCCCCCchhhcCcC
Confidence 355566665543322222 65 8899999987765 579999888765543
No 173
>PHA03054 IMV membrane protein; Provisional
Probab=66.57 E-value=24 Score=21.47 Aligned_cols=11 Identities=9% Similarity=-0.148 Sum_probs=4.9
Q ss_pred ccchhHHHHHH
Q 045853 13 DEGLRLLVLTT 23 (184)
Q Consensus 13 ~~~~~~~~~~~ 23 (184)
+.+..++.+++
T Consensus 43 ~~~~~~~~~ii 53 (72)
T PHA03054 43 TGCWGWYWLII 53 (72)
T ss_pred cCCchHHHHHH
Confidence 44555544333
No 174
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=66.30 E-value=1.7 Score=33.96 Aligned_cols=42 Identities=17% Similarity=0.547 Sum_probs=33.4
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
..|+-|.+-+.....||.. =.|+||.+|+ -|-+|++.+...+
T Consensus 93 TKCsaC~~GIpPtqVVRkA--qd~VYHl~CF--------~C~iC~R~L~TGd 134 (383)
T KOG4577|consen 93 TKCSACQEGIPPTQVVRKA--QDFVYHLHCF--------ACFICKRQLATGD 134 (383)
T ss_pred CcchhhcCCCChHHHHHHh--hcceeehhhh--------hhHhhhcccccCC
Confidence 3699999988887777765 5799999996 4888888876554
No 175
>PHA02844 putative transmembrane protein; Provisional
Probab=64.72 E-value=25 Score=21.64 Aligned_cols=11 Identities=9% Similarity=-0.167 Sum_probs=4.9
Q ss_pred CccchhHHHHH
Q 045853 12 NDEGLRLLVLT 22 (184)
Q Consensus 12 ~~~~~~~~~~~ 22 (184)
+..+..++..+
T Consensus 42 ~~~~~~~~~~i 52 (75)
T PHA02844 42 NVCSSSTKIWI 52 (75)
T ss_pred ccCChhHHHHH
Confidence 34445554433
No 176
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=64.61 E-value=2.6 Score=24.15 Aligned_cols=12 Identities=33% Similarity=0.930 Sum_probs=6.1
Q ss_pred Cccccccccccc
Q 045853 158 STCPLCRGRVRR 169 (184)
Q Consensus 158 ~~CP~CR~~i~~ 169 (184)
..||+|.+++.+
T Consensus 21 ~~CPlC~r~l~~ 32 (54)
T PF04423_consen 21 GCCPLCGRPLDE 32 (54)
T ss_dssp EE-TTT--EE-H
T ss_pred CcCCCCCCCCCH
Confidence 379999988854
No 177
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=64.32 E-value=23 Score=19.71 Aligned_cols=8 Identities=0% Similarity=0.156 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 045853 41 SYYLFTQL 48 (184)
Q Consensus 41 ~~~~~~~~ 48 (184)
.++.++++
T Consensus 26 ~~w~~~~~ 33 (49)
T PF05545_consen 26 VIWAYRPR 33 (49)
T ss_pred HHHHHccc
Confidence 33344333
No 178
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=64.23 E-value=6.5 Score=26.98 Aligned_cols=8 Identities=50% Similarity=0.854 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 045853 40 ISYYLFTQ 47 (184)
Q Consensus 40 i~~~~~~~ 47 (184)
..++.|+|
T Consensus 120 ~~~yr~~r 127 (139)
T PHA03099 120 LSVYRFTR 127 (139)
T ss_pred Hhhheeee
Confidence 33344433
No 179
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=63.58 E-value=5.6 Score=31.61 Aligned_cols=48 Identities=8% Similarity=-0.006 Sum_probs=35.5
Q ss_pred ccCCCCcccccCcccccCCccceeecCCCc-cccHhhHHHHhcCCCccccccccc
Q 045853 114 DAVNKTSTCVICLEEFRDGDECKVRSKCNH-IFHQTCMDDWLDDHSTCPLCRGRV 167 (184)
Q Consensus 114 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H-~FH~~Ci~~Wl~~~~~CP~CR~~i 167 (184)
+..-...+|..|-+.... ..+.+||| .|+-.|.. +.-..+||.|....
T Consensus 338 ~~~~s~~~~~~~~~~~~s----t~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 338 NGLMSSLKGTSAGFGLLS----TIWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred ccchhhcccccccCceee----eEeecCCcccChhhhhh--cccCCccccccccc
Confidence 334445578888877766 55557998 59999987 66678999997644
No 180
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=63.48 E-value=28 Score=26.12 Aligned_cols=24 Identities=29% Similarity=0.431 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045853 22 TTPLVISSVVCLILFLFYISYYLF 45 (184)
Q Consensus 22 ~~~~~i~~~~~li~~~~~i~~~~~ 45 (184)
++.++|+.+++||..++|+.-.++
T Consensus 131 LIClIIIAVLfLICT~LfLSTVVL 154 (227)
T PF05399_consen 131 LICLIIIAVLFLICTLLFLSTVVL 154 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555544443
No 181
>PF15353 HECA: Headcase protein family homologue
Probab=63.32 E-value=4.9 Score=26.57 Aligned_cols=15 Identities=27% Similarity=0.922 Sum_probs=12.9
Q ss_pred CCccccHhhHHHHhc
Q 045853 141 CNHIFHQTCMDDWLD 155 (184)
Q Consensus 141 C~H~FH~~Ci~~Wl~ 155 (184)
.|+.+|.+|++.|=.
T Consensus 40 ~~~~MH~~CF~~wE~ 54 (107)
T PF15353_consen 40 FGQYMHRECFEKWED 54 (107)
T ss_pred CCCchHHHHHHHHHH
Confidence 478999999999954
No 182
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=62.45 E-value=16 Score=22.81 Aligned_cols=50 Identities=24% Similarity=0.551 Sum_probs=19.7
Q ss_pred cccccCcccccCCc--ccee-ecCCCccccHhhHHHHhc-CCCccccccccccc
Q 045853 120 STCVICLEEFRDGD--ECKV-RSKCNHIFHQTCMDDWLD-DHSTCPLCRGRVRR 169 (184)
Q Consensus 120 ~~C~ICl~~~~~~~--~~~~-l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~ 169 (184)
..|-||-++.-..+ ++.+ .-.|+--.+..|.+-=.+ .++.||-|+....+
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 46999999875332 2222 234566678889876554 67889999988754
No 183
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=61.35 E-value=1.5 Score=23.78 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=15.3
Q ss_pred cCCCccccHhhHHHHhcCCCccccccc
Q 045853 139 SKCNHIFHQTCMDDWLDDHSTCPLCRG 165 (184)
Q Consensus 139 ~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 165 (184)
..|||.|-..--..= .....||.|..
T Consensus 9 ~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 9 EECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 468888765321000 23456999988
No 184
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=61.24 E-value=1.9 Score=25.20 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=15.5
Q ss_pred cceeecCCCccccHhhHHHH
Q 045853 134 ECKVRSKCNHIFHQTCMDDW 153 (184)
Q Consensus 134 ~~~~l~~C~H~FH~~Ci~~W 153 (184)
.....+.|||.|+..|-..|
T Consensus 39 ~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 39 NRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CeeECCCCCCeECCCCCCcC
Confidence 34445478999999998888
No 185
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=61.18 E-value=4 Score=24.02 Aligned_cols=15 Identities=27% Similarity=0.782 Sum_probs=11.3
Q ss_pred CCCcccccccccccc
Q 045853 156 DHSTCPLCRGRVRRI 170 (184)
Q Consensus 156 ~~~~CP~CR~~i~~~ 170 (184)
....||+|..+....
T Consensus 38 ~~p~CPlC~s~M~~~ 52 (59)
T PF14169_consen 38 EEPVCPLCKSPMVSG 52 (59)
T ss_pred CCccCCCcCCccccc
Confidence 346799999988644
No 186
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=61.08 E-value=6.1 Score=22.66 Aligned_cols=25 Identities=28% Similarity=0.737 Sum_probs=13.7
Q ss_pred ecCCCccccHhhHHHHhcCCCccccc
Q 045853 138 RSKCNHIFHQTCMDDWLDDHSTCPLC 163 (184)
Q Consensus 138 l~~C~H~FH~~Ci~~Wl~~~~~CP~C 163 (184)
.+.|||.|... +..-......||.|
T Consensus 31 C~~Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 31 CPKCGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCCCCeeEcc-HhhhccCCCCCCCC
Confidence 33567755543 22222456679987
No 187
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=61.05 E-value=6.7 Score=22.16 Aligned_cols=42 Identities=19% Similarity=0.636 Sum_probs=16.8
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhc-----CCCcccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD-----DHSTCPLCRGR 166 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~ 166 (184)
.|+|....+.. .+|-. .|.|.-+.+ ++.|+. ..-.||+|.++
T Consensus 4 ~CPls~~~i~~--P~Rg~-~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRI--PVRGK-NCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SS--EEEET-T--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEe--CccCC-cCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 57777777665 33433 588862211 334554 22359999864
No 188
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=60.97 E-value=37 Score=21.03 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHhhH
Q 045853 38 FYISYYLFTQLYSS 51 (184)
Q Consensus 38 ~~i~~~~~~~~~~~ 51 (184)
+|+....+.-.++.
T Consensus 15 ifVap~WL~lHY~s 28 (75)
T PF06667_consen 15 IFVAPIWLILHYRS 28 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333444433
No 189
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=60.84 E-value=0.92 Score=27.69 Aligned_cols=39 Identities=26% Similarity=0.600 Sum_probs=20.0
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
.|+.|..++.... +|.++..|-.. +.....||-|.+++.
T Consensus 3 ~CP~C~~~L~~~~--------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 3 TCPKCQQELEWQG--------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp B-SSS-SBEEEET--------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred cCCCCCCccEEeC--------CEEECcccccc-ceecccCCCcccHHH
Confidence 6888888866533 45555556543 234566888888775
No 190
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=60.38 E-value=2.9 Score=33.03 Aligned_cols=9 Identities=11% Similarity=-0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q 045853 39 YISYYLFTQ 47 (184)
Q Consensus 39 ~i~~~~~~~ 47 (184)
+++.+++++
T Consensus 163 ~iIa~icyr 171 (290)
T PF05454_consen 163 GIIACICYR 171 (290)
T ss_dssp ---------
T ss_pred HHHHHHhhh
Confidence 333333333
No 191
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=60.29 E-value=1.1 Score=36.93 Aligned_cols=40 Identities=25% Similarity=0.635 Sum_probs=26.7
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccccC
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAW 172 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~ 172 (184)
.|..|-+.+.+ ++|.-||-.||-.|+ +|-+|.+.+....+
T Consensus 336 kC~~Cg~~I~d----~iLrA~GkayHp~CF--------~Cv~C~r~ldgipF 375 (468)
T KOG1701|consen 336 KCNKCGEPIMD----RILRALGKAYHPGCF--------TCVVCARCLDGIPF 375 (468)
T ss_pred HHhhhhhHHHH----HHHHhcccccCCCce--------EEEEeccccCCccc
Confidence 47777777666 666678888888884 56666666554443
No 192
>PLN02189 cellulose synthase
Probab=60.27 E-value=15 Score=34.18 Aligned_cols=53 Identities=23% Similarity=0.523 Sum_probs=35.9
Q ss_pred CcccccCccccc--CCcccee-ecCCCccccHhhHHHHhc-CCCccccccccccccc
Q 045853 119 TSTCVICLEEFR--DGDECKV-RSKCNHIFHQTCMDDWLD-DHSTCPLCRGRVRRIA 171 (184)
Q Consensus 119 ~~~C~ICl~~~~--~~~~~~~-l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~~ 171 (184)
...|.||-++.. .+.++.+ +..|+--.|..|.+-=-+ .++.||.||+...+-.
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 347999999976 2223333 334666689999843332 6788999999887433
No 193
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.50 E-value=9.8 Score=33.58 Aligned_cols=49 Identities=27% Similarity=0.483 Sum_probs=36.3
Q ss_pred ccccCcccccCCccceeecCCCc-cccHhhHHHHhc--C----CCcccccccccccccCC
Q 045853 121 TCVICLEEFRDGDECKVRSKCNH-IFHQTCMDDWLD--D----HSTCPLCRGRVRRIAWP 173 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H-~FH~~Ci~~Wl~--~----~~~CP~CR~~i~~~~~~ 173 (184)
.|+||-..+.- .....||| .-+..|..+... . ...||+||..+....+-
T Consensus 2 ~c~ic~~s~~~----~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s~~ 57 (669)
T KOG2231|consen 2 SCAICAFSPDF----VGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKSNG 57 (669)
T ss_pred CcceeecCccc----cccccccccccchhhhhhhhhhcccccccccCcccccceeeeccc
Confidence 49999888765 55567999 799999888754 3 34579999977655433
No 194
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.39 E-value=81 Score=28.09 Aligned_cols=40 Identities=28% Similarity=0.564 Sum_probs=28.5
Q ss_pred ccccCcccccC-CccceeecCCCccccHhhHHHHhcCCCcccccc
Q 045853 121 TCVICLEEFRD-GDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCR 164 (184)
Q Consensus 121 ~C~ICl~~~~~-~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR 164 (184)
.|-+|...-.. .+..+.+ .|+-.||..| |+.-+..||+|-
T Consensus 656 ~C~vcq~pedse~~v~rt~-~C~~~~C~~c---~~~~~~~~~vC~ 696 (717)
T KOG3726|consen 656 TCKVCQLPEDSETDVCRTT-FCYTPYCVAC---SLDYASISEVCG 696 (717)
T ss_pred HHHHhcCCcCccccccCcc-ccCCcchHhh---hhhhhccCcccC
Confidence 68888876653 3344544 5999999888 555567799993
No 195
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=59.37 E-value=6.8 Score=23.33 Aligned_cols=11 Identities=36% Similarity=0.896 Sum_probs=8.5
Q ss_pred Ccccccccccc
Q 045853 158 STCPLCRGRVR 168 (184)
Q Consensus 158 ~~CP~CR~~i~ 168 (184)
..||+|++++.
T Consensus 7 v~CP~C~k~~~ 17 (62)
T PRK00418 7 VNCPTCGKPVE 17 (62)
T ss_pred ccCCCCCCccc
Confidence 46999988874
No 196
>PF02723 NS3_envE: Non-structural protein NS3/Small envelope protein E; InterPro: IPR003873 This is a family of small nonstructural proteins, well conserved among Coronavirus strains. This protein is also found in Murine hepatitis virus as small envelope protein E.; GO: 0016020 membrane
Probab=58.80 E-value=39 Score=21.35 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=17.9
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045853 12 NDEGLRLLVLTTPLVISSVVCLILFLFYISYYLF 45 (184)
Q Consensus 12 ~~~~~~~~~~~~~~~i~~~~~li~~~~~i~~~~~ 45 (184)
++.|+...++++.++.++++++..+++..+-.++
T Consensus 8 dd~~lVvNiil~llvc~~~liv~~AlL~~IqLC~ 41 (82)
T PF02723_consen 8 DDHGLVVNIILWLLVCLVVLIVCIALLQLIQLCF 41 (82)
T ss_pred cCceeehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666555555555544444444444443
No 197
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=58.64 E-value=4.8 Score=23.57 Aligned_cols=12 Identities=33% Similarity=0.880 Sum_probs=5.7
Q ss_pred Cccccccccccc
Q 045853 158 STCPLCRGRVRR 169 (184)
Q Consensus 158 ~~CP~CR~~i~~ 169 (184)
..||+|++.+..
T Consensus 3 v~CP~C~k~~~~ 14 (57)
T PF03884_consen 3 VKCPICGKPVEW 14 (57)
T ss_dssp EE-TTT--EEE-
T ss_pred ccCCCCCCeecc
Confidence 358888887765
No 198
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=58.44 E-value=5 Score=21.03 Aligned_cols=32 Identities=22% Similarity=0.540 Sum_probs=19.9
Q ss_pred eeecCCCccccHhhHHHHhcCCCccccccccccc
Q 045853 136 KVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 136 ~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
++.+.||++||..=-- -+....|..|-..+..
T Consensus 2 r~C~~Cg~~Yh~~~~p--P~~~~~Cd~cg~~L~q 33 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNP--PKVEGVCDNCGGELVQ 33 (36)
T ss_dssp EEETTTTEEEETTTB----SSTTBCTTTTEBEBE
T ss_pred cCcCCCCCccccccCC--CCCCCccCCCCCeeEe
Confidence 4567899999953211 1134568888877653
No 199
>PHA02657 hypothetical protein; Provisional
Probab=58.22 E-value=28 Score=22.05 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 045853 25 LVISSVVCLILFLFYISYYLFTQLY 49 (184)
Q Consensus 25 ~~i~~~~~li~~~~~i~~~~~~~~~ 49 (184)
.++.++++.+.+++++++++..+..
T Consensus 28 mVitvfv~vI~il~flLLYLvkWS~ 52 (95)
T PHA02657 28 LVFTIFIFVVCILIYLLIYLVDWSL 52 (95)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555544443
No 200
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=58.19 E-value=8.3 Score=22.47 Aligned_cols=25 Identities=28% Similarity=0.810 Sum_probs=20.5
Q ss_pred CCcccccccccccccCCCCCCCCCC
Q 045853 157 HSTCPLCRGRVRRIAWPSFTTADDW 181 (184)
Q Consensus 157 ~~~CP~CR~~i~~~~~~~~~~~~~~ 181 (184)
+..||.|-.+......+.|++.|..
T Consensus 17 k~~CP~CG~~t~~~~P~rfSp~D~y 41 (56)
T PRK13130 17 KEICPVCGGKTKNPHPPRFSPEDKY 41 (56)
T ss_pred cccCcCCCCCCCCCCCCCCCCCCcc
Confidence 5679999999888888888887753
No 201
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=58.15 E-value=21 Score=23.30 Aligned_cols=24 Identities=4% Similarity=0.132 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 045853 27 ISSVVCLILFLFYISYYLFTQLYS 50 (184)
Q Consensus 27 i~~~~~li~~~~~i~~~~~~~~~~ 50 (184)
|.++.+++.+.+++.+++..|+..
T Consensus 23 ItLasVvvavGl~aGLfFcvR~~l 46 (106)
T PF14654_consen 23 ITLASVVVAVGLFAGLFFCVRNSL 46 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 333344444445555555555443
No 202
>PRK05978 hypothetical protein; Provisional
Probab=57.91 E-value=6 Score=28.00 Aligned_cols=28 Identities=18% Similarity=0.530 Sum_probs=22.6
Q ss_pred eecCCC--ccccHhhHHHHhcCCCccccccccccc
Q 045853 137 VRSKCN--HIFHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 137 ~l~~C~--H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
..|.|| |.|+ .+++-+..||.|-.++..
T Consensus 35 rCP~CG~G~LF~-----g~Lkv~~~C~~CG~~~~~ 64 (148)
T PRK05978 35 RCPACGEGKLFR-----AFLKPVDHCAACGEDFTH 64 (148)
T ss_pred cCCCCCCCcccc-----cccccCCCccccCCcccc
Confidence 356786 8897 688999999999988853
No 203
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=57.30 E-value=7.2 Score=34.08 Aligned_cols=45 Identities=16% Similarity=0.292 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045853 2 PFAATPSTCPNDEGLRLLVLTTPLVISSVVCLILFLFYISYYLFTQLY 49 (184)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~ 49 (184)
|+.+.......+...++|+++-++ +.++++ ++++.++++++.++.
T Consensus 253 Pv~~~a~P~~~s~~~NlWII~gVl--vPv~vV-~~Iiiil~~~LCRk~ 297 (684)
T PF12877_consen 253 PVEKQAEPPAKSPPNNLWIIAGVL--VPVLVV-LLIIIILYWKLCRKN 297 (684)
T ss_pred ccccccCCCCCCCCCCeEEEehHh--HHHHHH-HHHHHHHHHHHhccc
Confidence 445555555666677888744443 222222 333444444444443
No 204
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=56.53 E-value=1.4 Score=25.34 Aligned_cols=37 Identities=30% Similarity=0.662 Sum_probs=20.9
Q ss_pred cccccCcccccCCccceeecCCCcc--ccHhhHHHHhcCCCccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHI--FHQTCMDDWLDDHSTCPLCRGRV 167 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~--FH~~Ci~~Wl~~~~~CP~CR~~i 167 (184)
..|+.|-.++.. ..| +.|+ .|..- .....||+|...+
T Consensus 3 f~CP~C~~~~~~----~~L--~~H~~~~H~~~-----~~~v~CPiC~~~~ 41 (54)
T PF05605_consen 3 FTCPYCGKGFSE----SSL--VEHCEDEHRSE-----SKNVVCPICSSRV 41 (54)
T ss_pred cCCCCCCCccCH----HHH--HHHHHhHCcCC-----CCCccCCCchhhh
Confidence 469999986554 223 4443 22211 1345699998643
No 205
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=56.44 E-value=31 Score=22.35 Aligned_cols=7 Identities=14% Similarity=0.207 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 045853 22 TTPLVIS 28 (184)
Q Consensus 22 ~~~~~i~ 28 (184)
..+.+..
T Consensus 41 yWpyLA~ 47 (98)
T PF07204_consen 41 YWPYLAA 47 (98)
T ss_pred hhHHhhc
Confidence 3444433
No 206
>PHA02650 hypothetical protein; Provisional
Probab=56.32 E-value=47 Score=20.73 Aligned_cols=39 Identities=8% Similarity=-0.077 Sum_probs=18.8
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045853 10 CPNDEGLRLLVLTTPLVISSVVCLILFLFYISYYLFTQL 48 (184)
Q Consensus 10 ~~~~~~~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~~~ 48 (184)
+..+.+..-+.....++++++++++++++...|....++
T Consensus 37 ~~~~~~~~~~~~~~~~ii~i~~v~i~~l~~flYLK~~~r 75 (81)
T PHA02650 37 SKKTIKSVSWFNGQNFIFLIFSLIIVALFSFFVFKGYTR 75 (81)
T ss_pred ccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333334454455555555555555455555545444433
No 207
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=56.11 E-value=9 Score=29.76 Aligned_cols=42 Identities=24% Similarity=0.436 Sum_probs=26.9
Q ss_pred cccccCcccccCCccceeecCCCc-cccHhhHHHHh-cCCCccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNH-IFHQTCMDDWL-DDHSTCP 161 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H-~FH~~Ci~~Wl-~~~~~CP 161 (184)
..|.||++--.++-.---++.=+- .=|.+|+++|- ..+..||
T Consensus 31 sfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~p 74 (285)
T PF06937_consen 31 SFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCP 74 (285)
T ss_pred eecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCC
Confidence 358888877665433222232221 36899999995 5788899
No 208
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=56.01 E-value=81 Score=23.52 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=5.9
Q ss_pred HHHHHHHHhhHHHHhh
Q 045853 41 SYYLFTQLYSSRIQTQ 56 (184)
Q Consensus 41 ~~~~~~~~~~~r~~~~ 56 (184)
+.++++.....-...+
T Consensus 65 L~k~l~kPi~~~L~~R 80 (205)
T PRK06231 65 GIFLFWKPTQRFLNKR 80 (205)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 209
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=55.87 E-value=41 Score=19.89 Aligned_cols=14 Identities=7% Similarity=0.290 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHhh
Q 045853 37 LFYISYYLFTQLYS 50 (184)
Q Consensus 37 ~~~i~~~~~~~~~~ 50 (184)
++.+.++.++..++
T Consensus 22 fiavi~~ayr~~~K 35 (60)
T COG4736 22 FIAVIYFAYRPGKK 35 (60)
T ss_pred HHHHHHHHhcccch
Confidence 33344444444433
No 210
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=55.56 E-value=28 Score=17.87 Aligned_cols=8 Identities=25% Similarity=0.384 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 045853 35 LFLFYISY 42 (184)
Q Consensus 35 ~~~~~i~~ 42 (184)
+|++.+.+
T Consensus 21 vFWfgvf~ 28 (34)
T PF08113_consen 21 VFWFGVFA 28 (34)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444433
No 211
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=55.51 E-value=4.6 Score=33.91 Aligned_cols=56 Identities=18% Similarity=0.485 Sum_probs=36.6
Q ss_pred CcccccCccc-ccCCccceeecCCCccccHhhHHHHhc----C----CCcccccccccccccCCC
Q 045853 119 TSTCVICLEE-FRDGDECKVRSKCNHIFHQTCMDDWLD----D----HSTCPLCRGRVRRIAWPS 174 (184)
Q Consensus 119 ~~~C~ICl~~-~~~~~~~~~l~~C~H~FH~~Ci~~Wl~----~----~~~CP~CR~~i~~~~~~~ 174 (184)
+..|++|+.- .-....+..+-.|+-.||..|-+.... . .-.|=.|+......+...
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~r~t 232 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVPRLT 232 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhccccc
Confidence 3469999954 344445556667788899999766554 1 123999987665554333
No 212
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=55.46 E-value=5.6 Score=27.83 Aligned_cols=23 Identities=22% Similarity=0.684 Sum_probs=17.9
Q ss_pred eecCCCccccHhhHHHHhcCCCccccccccc
Q 045853 137 VRSKCNHIFHQTCMDDWLDDHSTCPLCRGRV 167 (184)
Q Consensus 137 ~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i 167 (184)
.+..|||+|+. .+..||.|....
T Consensus 31 kC~~CG~v~~P--------Pr~~Cp~C~~~~ 53 (140)
T COG1545 31 KCKKCGRVYFP--------PRAYCPKCGSET 53 (140)
T ss_pred EcCCCCeEEcC--------CcccCCCCCCCC
Confidence 34579999885 566799999874
No 213
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=55.40 E-value=72 Score=23.21 Aligned_cols=6 Identities=17% Similarity=0.168 Sum_probs=2.2
Q ss_pred HHHHHH
Q 045853 42 YYLFTQ 47 (184)
Q Consensus 42 ~~~~~~ 47 (184)
+++.++
T Consensus 42 ~~fl~k 47 (184)
T CHL00019 42 IYFGKG 47 (184)
T ss_pred HHHhHh
Confidence 333333
No 214
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=55.15 E-value=2 Score=33.89 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=21.4
Q ss_pred CCCcccccCcccccCCccceeec-CCCccccHhhHHHHhcCCCccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRS-KCNHIFHQTCMDDWLDDHSTCPLCRG 165 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~-~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 165 (184)
.....|++|-..-.-+.....-. .=.|.+|.-|-..|-.....||.|-.
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 34468999988755321111000 11356778888899888889999954
No 215
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=54.72 E-value=4.1 Score=32.19 Aligned_cols=40 Identities=15% Similarity=0.008 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 045853 13 DEGLRLLVLTTPLVISSVVCLILFLFYISYYLFTQLYSSR 52 (184)
Q Consensus 13 ~~~~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r 52 (184)
+.+..++..+++.+++++++|++++++++.|...|.-.-.
T Consensus 140 s~~d~yL~T~IpaVVI~~iLLIA~iIa~icyrrkR~GK~~ 179 (290)
T PF05454_consen 140 SFSDDYLHTFIPAVVIAAILLIAGIIACICYRRKRKGKMS 179 (290)
T ss_dssp ----------------------------------------
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 3333444444566666666666666666666777765433
No 216
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=54.71 E-value=8.2 Score=33.31 Aligned_cols=36 Identities=28% Similarity=0.648 Sum_probs=24.8
Q ss_pred CCCcccccCcccccCC-----------ccceeecCCCccccHhhHHHHh
Q 045853 117 NKTSTCVICLEEFRDG-----------DECKVRSKCNHIFHQTCMDDWL 154 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~-----------~~~~~l~~C~H~FH~~Ci~~Wl 154 (184)
+....|+||.+.|+.- +.|.+. =|-+||..|+..--
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le--~G~ifH~~Cl~e~~ 557 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLE--FGRIFHSKCLSEKR 557 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeec--cCceeeccccchHH
Confidence 4456799999999731 233332 47899999987653
No 217
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.61 E-value=6.4 Score=25.24 Aligned_cols=12 Identities=25% Similarity=0.946 Sum_probs=10.8
Q ss_pred cccHhhHHHHhc
Q 045853 144 IFHQTCMDDWLD 155 (184)
Q Consensus 144 ~FH~~Ci~~Wl~ 155 (184)
-||.+|+..|.+
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 399999999987
No 218
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.54 E-value=4.4 Score=31.99 Aligned_cols=50 Identities=24% Similarity=0.611 Sum_probs=38.9
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
.+...|-||...+.-.+. .. .|.|-|...|-..|....+.||.||..+.+
T Consensus 103 ~~~~~~~~~~g~l~vpt~--~q-g~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTR--IQ-GCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred CCccceeeeeeeEEeccc--cc-CceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 344579999988775332 22 599999999999999988999999986643
No 219
>PF15102 TMEM154: TMEM154 protein family
Probab=54.07 E-value=1.6 Score=30.59 Aligned_cols=8 Identities=38% Similarity=0.870 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q 045853 18 LLVLTTPL 25 (184)
Q Consensus 18 ~~~~~~~~ 25 (184)
+.++++++
T Consensus 58 iLmIlIP~ 65 (146)
T PF15102_consen 58 ILMILIPL 65 (146)
T ss_pred EEEEeHHH
Confidence 44444554
No 220
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.06 E-value=4.3 Score=28.04 Aligned_cols=46 Identities=33% Similarity=0.661 Sum_probs=27.1
Q ss_pred ccCCCCcccccCccc-ccCCccceeecCCCcc-------ccHhhHHHHhcC-CC---ccccccccc
Q 045853 114 DAVNKTSTCVICLEE-FRDGDECKVRSKCNHI-------FHQTCMDDWLDD-HS---TCPLCRGRV 167 (184)
Q Consensus 114 ~~~~~~~~C~ICl~~-~~~~~~~~~l~~C~H~-------FH~~Ci~~Wl~~-~~---~CP~CR~~i 167 (184)
....++..|-||+.. |.+ .|||. ||..|-.+--.+ +. .|-+||...
T Consensus 60 aGv~ddatC~IC~KTKFAD--------G~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFAD--------GCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred cccCcCcchhhhhhccccc--------ccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 345666789999965 666 46664 444554333222 22 388888754
No 221
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=52.96 E-value=41 Score=24.07 Aligned_cols=7 Identities=14% Similarity=-0.054 Sum_probs=3.0
Q ss_pred chhHHHH
Q 045853 15 GLRLLVL 21 (184)
Q Consensus 15 ~~~~~~~ 21 (184)
...+|.+
T Consensus 9 ~~~~w~~ 15 (167)
T PRK14475 9 NPEFWVG 15 (167)
T ss_pred chHHHHH
Confidence 3444443
No 222
>PLN02436 cellulose synthase A
Probab=52.86 E-value=23 Score=33.10 Aligned_cols=53 Identities=28% Similarity=0.642 Sum_probs=35.4
Q ss_pred CcccccCccccc---CCccceeecCCCccccHhhHHHHhc-CCCccccccccccccc
Q 045853 119 TSTCVICLEEFR---DGDECKVRSKCNHIFHQTCMDDWLD-DHSTCPLCRGRVRRIA 171 (184)
Q Consensus 119 ~~~C~ICl~~~~---~~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~~ 171 (184)
...|-||-++.. +++.-..+-.|+--.|..|.+-=.+ .++.||.||+...+-.
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 347999999974 3333333334666689999843332 6788999999887433
No 223
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=52.82 E-value=19 Score=23.87 Aligned_cols=27 Identities=33% Similarity=0.856 Sum_probs=19.8
Q ss_pred cCC---CccccHhhHHHHhcC---------CCccccccc
Q 045853 139 SKC---NHIFHQTCMDDWLDD---------HSTCPLCRG 165 (184)
Q Consensus 139 ~~C---~H~FH~~Ci~~Wl~~---------~~~CP~CR~ 165 (184)
..| .=.|+..|+..++.. +-.||.||.
T Consensus 31 ~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 31 SSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 356 456999999888752 335999987
No 224
>PHA02975 hypothetical protein; Provisional
Probab=51.91 E-value=42 Score=20.32 Aligned_cols=7 Identities=0% Similarity=0.055 Sum_probs=3.1
Q ss_pred cchhHHH
Q 045853 14 EGLRLLV 20 (184)
Q Consensus 14 ~~~~~~~ 20 (184)
.+..++.
T Consensus 40 ~~~~~~~ 46 (69)
T PHA02975 40 KSSLSII 46 (69)
T ss_pred CCchHHH
Confidence 4444444
No 225
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=51.56 E-value=18 Score=32.51 Aligned_cols=31 Identities=10% Similarity=0.155 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045853 16 LRLLVLTTPLVISSVVCLILFLFYISYYLFT 46 (184)
Q Consensus 16 ~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~ 46 (184)
....++++.++..+++++++++.+.++||..
T Consensus 269 ~YHT~fLl~ILG~~~livl~lL~vLl~yCrr 299 (807)
T PF10577_consen 269 TYHTVFLLAILGGTALIVLILLCVLLCYCRR 299 (807)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3444555555555555554444444444433
No 226
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=50.94 E-value=9.2 Score=18.95 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=18.2
Q ss_pred ccccCcccccCCccceeecCCCccccHhhH
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCM 150 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci 150 (184)
.|.+|-.+..... ......|+-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~-~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-FYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCE-eEEeCCCCCeEcCccC
Confidence 4888876666543 3334457777887773
No 227
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=49.99 E-value=9.3 Score=30.57 Aligned_cols=44 Identities=20% Similarity=0.466 Sum_probs=28.4
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRG 165 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 165 (184)
.|--|.++...... .....|.|+||.+|=.-.-..-..||.|-.
T Consensus 332 ~Cf~C~~~~~~~~~-y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 332 FCFACQGELLSSGR-YRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred ceeeeccccCCCCc-EEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 37777555554443 334569999999995443344567999963
No 228
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=49.92 E-value=15 Score=21.88 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=24.0
Q ss_pred cccccCcccccC--CccceeecCCCccccHhhHHH
Q 045853 120 STCVICLEEFRD--GDECKVRSKCNHIFHQTCMDD 152 (184)
Q Consensus 120 ~~C~ICl~~~~~--~~~~~~l~~C~H~FH~~Ci~~ 152 (184)
..|+.|-..... .+.....+.||+.+|.+-...
T Consensus 29 q~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA 63 (69)
T PF07282_consen 29 QTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAA 63 (69)
T ss_pred cCccCcccccccccccceEEcCCCCCEECcHHHHH
Confidence 469999888777 555566767898888775444
No 229
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=49.83 E-value=51 Score=19.25 Aligned_cols=8 Identities=0% Similarity=-0.072 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 045853 42 YYLFTQLY 49 (184)
Q Consensus 42 ~~~~~~~~ 49 (184)
+.......
T Consensus 26 ~IRri~~~ 33 (58)
T PF13314_consen 26 FIRRILIN 33 (58)
T ss_pred HHHHHHHh
Confidence 33443333
No 230
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=49.71 E-value=30 Score=22.08 Aligned_cols=12 Identities=17% Similarity=-0.131 Sum_probs=6.6
Q ss_pred HHHHHHHHhhHH
Q 045853 41 SYYLFTQLYSSR 52 (184)
Q Consensus 41 ~~~~~~~~~~~r 52 (184)
..++..|++.+|
T Consensus 52 fvCC~kRkrsRr 63 (94)
T PF05393_consen 52 FVCCKKRKRSRR 63 (94)
T ss_pred HHHHHHhhhccC
Confidence 345555555555
No 231
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=49.53 E-value=12 Score=28.63 Aligned_cols=25 Identities=28% Similarity=0.719 Sum_probs=19.6
Q ss_pred ccHhhHHHHhcCCCccccccccccc
Q 045853 145 FHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 145 FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
-|..|-...-++-..||+|+..-..
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsRS 220 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSRS 220 (230)
T ss_pred hhHhHHHHHhcCCCCCccccccccc
Confidence 4677888877788899999987643
No 232
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=49.23 E-value=8.2 Score=34.41 Aligned_cols=44 Identities=25% Similarity=0.557 Sum_probs=28.5
Q ss_pred cccccCccccc---------CCccceeecCCCccccHhhHHHHhcCCCccccccccc
Q 045853 120 STCVICLEEFR---------DGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRV 167 (184)
Q Consensus 120 ~~C~ICl~~~~---------~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i 167 (184)
.+|+=|...|- .+...-+.+.|.|.-|.+=|.. .+.||+|...+
T Consensus 1132 ~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1132 LQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSME 1184 (1189)
T ss_pred CCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChh
Confidence 35666666653 1122345667999888776644 47899998765
No 233
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=49.21 E-value=39 Score=23.82 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045853 23 TPLVISSVVCLILFLFYISYYLF 45 (184)
Q Consensus 23 ~~~~i~~~~~li~~~~~i~~~~~ 45 (184)
.+.+++++...++++++.+|.++
T Consensus 118 ~~~i~~~i~g~ll~i~~giy~~~ 140 (145)
T PF10661_consen 118 SPTILLSIGGILLAICGGIYVVL 140 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444443
No 234
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=49.05 E-value=19 Score=23.67 Aligned_cols=34 Identities=26% Similarity=0.545 Sum_probs=21.5
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHH
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDW 153 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~W 153 (184)
...|.||-...-.--... .+.|...||..|....
T Consensus 55 ~~~C~iC~~~~G~~i~C~-~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 55 KLKCSICGKSGGACIKCS-HPGCSTAFHPTCARKA 88 (110)
T ss_pred CCcCcCCCCCCceeEEcC-CCCCCcCCCHHHHHHC
Confidence 457999999832211111 2247889999998653
No 235
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=48.98 E-value=73 Score=20.76 Aligned_cols=17 Identities=12% Similarity=0.411 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045853 29 SVVCLILFLFYISYYLF 45 (184)
Q Consensus 29 ~~~~li~~~~~i~~~~~ 45 (184)
++++++++++.+..-+|
T Consensus 22 L~i~~FiILLIi~~~IW 38 (121)
T PF10669_consen 22 LFIVVFIILLIITKSIW 38 (121)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33333333333333333
No 236
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=48.66 E-value=15 Score=25.82 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=11.2
Q ss_pred CCccccccccccccc
Q 045853 157 HSTCPLCRGRVRRIA 171 (184)
Q Consensus 157 ~~~CP~CR~~i~~~~ 171 (184)
...||.|...+...+
T Consensus 123 ~f~Cp~Cg~~l~~~d 137 (147)
T smart00531 123 TFTCPRCGEELEEDD 137 (147)
T ss_pred cEECCCCCCEEEEcC
Confidence 367999999886544
No 237
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=48.43 E-value=98 Score=22.10 Aligned_cols=6 Identities=0% Similarity=0.606 Sum_probs=2.2
Q ss_pred HHHHhh
Q 045853 51 SRIQTQ 56 (184)
Q Consensus 51 ~r~~~~ 56 (184)
++...+
T Consensus 29 ~~~e~k 34 (175)
T COG4741 29 GKVESK 34 (175)
T ss_pred HHHHHH
Confidence 333333
No 238
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.23 E-value=8.7 Score=30.13 Aligned_cols=33 Identities=24% Similarity=0.613 Sum_probs=26.0
Q ss_pred cccccCcccccCCccceeecCC----CccccHhhHHHHhcC
Q 045853 120 STCVICLEEFRDGDECKVRSKC----NHIFHQTCMDDWLDD 156 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C----~H~FH~~Ci~~Wl~~ 156 (184)
..|.+|.|.+++ ...-+| .|.||.-|-.+-++.
T Consensus 269 LcCTLC~ERLED----THFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 269 LCCTLCHERLED----THFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred eeehhhhhhhcc----CceeecCCCcccceecccCHHHHHh
Confidence 479999999988 333347 499999999998874
No 239
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=47.93 E-value=12 Score=18.84 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=10.9
Q ss_pred ccccCcccccCC-ccceeecCCCcc
Q 045853 121 TCVICLEEFRDG-DECKVRSKCNHI 144 (184)
Q Consensus 121 ~C~ICl~~~~~~-~~~~~l~~C~H~ 144 (184)
.|+-|-.++.-. ..+.+.+.|+|-
T Consensus 4 ~Cp~C~se~~y~D~~~~vCp~C~~e 28 (30)
T PF08274_consen 4 KCPLCGSEYTYEDGELLVCPECGHE 28 (30)
T ss_dssp --TTT-----EE-SSSEEETTTTEE
T ss_pred CCCCCCCcceeccCCEEeCCccccc
Confidence 588888877633 345667778773
No 240
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=47.54 E-value=57 Score=21.88 Aligned_cols=7 Identities=43% Similarity=0.691 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 045853 25 LVISSVV 31 (184)
Q Consensus 25 ~~i~~~~ 31 (184)
+++++++
T Consensus 67 lii~Liv 73 (128)
T PF15145_consen 67 LIIVLIV 73 (128)
T ss_pred HHHHHHH
Confidence 3333333
No 241
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=46.60 E-value=20 Score=30.60 Aligned_cols=33 Identities=21% Similarity=0.477 Sum_probs=21.8
Q ss_pred CCcccccCcccccCCccceeecCCCccccHhhH
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCM 150 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci 150 (184)
+...|.-|...|..--.--.+..||-+||..|-
T Consensus 900 ~a~~cmacq~pf~afrrrhhcrncggifcg~cs 932 (990)
T KOG1819|consen 900 DAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCS 932 (990)
T ss_pred cchhhhhccCcHHHHHHhhhhcccCceeecccc
Confidence 345688888887653222234479999998884
No 242
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=46.12 E-value=2.8 Score=28.61 Aligned_cols=9 Identities=22% Similarity=0.490 Sum_probs=2.9
Q ss_pred CCCCccchh
Q 045853 9 TCPNDEGLR 17 (184)
Q Consensus 9 ~~~~~~~~~ 17 (184)
.|++..+..
T Consensus 66 ~C~a~p~~p 74 (129)
T PF12191_consen 66 GCPAAPPAP 74 (129)
T ss_dssp CHSS-SSS-
T ss_pred CCCCCCCCC
Confidence 444443333
No 243
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=46.00 E-value=11 Score=24.25 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=30.6
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
..|.-|.....--|.++++ .|+..+..|..|+++|.
T Consensus 34 S~C~~C~~~L~~~~lIPi~-------------S~l~lrGrCr~C~~~I~ 69 (92)
T PF06750_consen 34 SHCPHCGHPLSWWDLIPIL-------------SYLLLRGRCRYCGAPIP 69 (92)
T ss_pred CcCcCCCCcCcccccchHH-------------HHHHhCCCCcccCCCCC
Confidence 4799999998887777766 59998999999999884
No 244
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=45.75 E-value=66 Score=19.29 Aligned_cols=44 Identities=20% Similarity=0.400 Sum_probs=22.5
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 045853 11 PNDEGLRLLVLTTPLVISSVVCLILFLFYISYYLFTQLYSSRIQ 54 (184)
Q Consensus 11 ~~~~~~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r~~ 54 (184)
|+-..+.++.++-...+.+++.+++.++=.+=|++.|..-+|..
T Consensus 10 ~pf~vYlif~fv~c~~iCSi~~~~it~~Q~iDy~~vR~~Y~RHh 53 (67)
T PF03376_consen 10 PPFAVYLIFAFVTCTCICSIVCFVITFFQCIDYIYVRIAYRRHH 53 (67)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44444555555555555555555555444444555555544443
No 245
>PRK01343 zinc-binding protein; Provisional
Probab=45.60 E-value=14 Score=21.65 Aligned_cols=12 Identities=25% Similarity=0.645 Sum_probs=7.9
Q ss_pred CCcccccccccc
Q 045853 157 HSTCPLCRGRVR 168 (184)
Q Consensus 157 ~~~CP~CR~~i~ 168 (184)
...||+|+++..
T Consensus 9 ~~~CP~C~k~~~ 20 (57)
T PRK01343 9 TRPCPECGKPST 20 (57)
T ss_pred CCcCCCCCCcCc
Confidence 356788877654
No 246
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=45.43 E-value=67 Score=28.00 Aligned_cols=6 Identities=0% Similarity=0.141 Sum_probs=2.1
Q ss_pred HHHHHh
Q 045853 44 LFTQLY 49 (184)
Q Consensus 44 ~~~~~~ 49 (184)
++.++.
T Consensus 22 ~~rr~~ 27 (569)
T PRK04778 22 ILRKRN 27 (569)
T ss_pred HHHHHH
Confidence 333333
No 247
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=45.36 E-value=3.9 Score=32.27 Aligned_cols=35 Identities=31% Similarity=0.786 Sum_probs=27.5
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcC
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD 156 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~ 156 (184)
.|.+|+++|..+...... .|.-+||..|+..|+..
T Consensus 216 vC~~CF~el~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (288)
T KOG1729|consen 216 VCDICFEELEKGARGDRE-DSLPVFHGKCYPNWLTT 250 (288)
T ss_pred ecHHHHHHHhcccccchh-hcccccccccccccccc
Confidence 899999999865444444 35559999999999974
No 248
>PRK10633 hypothetical protein; Provisional
Probab=45.24 E-value=77 Score=19.93 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=18.0
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHH
Q 045853 9 TCPNDEGLRLLVLTTPLVISSVVCLIL 35 (184)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~i~~~~~li~ 35 (184)
.-+...|+..|+.++.++..+++++++
T Consensus 35 ~~~~i~GlP~WF~~sCi~~p~lfi~l~ 61 (80)
T PRK10633 35 NAPGFTGLPHWFEMACLLLPLLFILLC 61 (80)
T ss_pred CCCcccCCcHHHHHHHHHHHHHHHHHH
Confidence 346788889998887766555554433
No 249
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=44.86 E-value=7.6 Score=34.30 Aligned_cols=38 Identities=18% Similarity=0.468 Sum_probs=28.9
Q ss_pred CCccceeecCCCccccHhhHHHHhcCCCcccccccccc
Q 045853 131 DGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 131 ~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
++-.+...|.|.-+||.+=++.-..++.-||.||..-.
T Consensus 1040 Pd~~it~Cp~C~~~F~~eDFEl~vLqKGHCPFCrTS~d 1077 (1081)
T KOG1538|consen 1040 PDASITMCPSCFQMFHSEDFELLVLQKGHCPFCRTSKD 1077 (1081)
T ss_pred CcchhhhCchHHhhhccchhhHHHHhcCCCCccccccc
Confidence 34455667778888888887777778888999998653
No 250
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=44.56 E-value=15 Score=27.90 Aligned_cols=24 Identities=25% Similarity=0.720 Sum_probs=18.0
Q ss_pred cHhhHHHHhcCCCccccccccccc
Q 045853 146 HQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 146 H~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
|..|-.+.-++...||+|+..-..
T Consensus 252 ClsChqqIHRNAPiCPlCKaKsRS 275 (286)
T KOG4451|consen 252 CLSCHQQIHRNAPICPLCKAKSRS 275 (286)
T ss_pred HHHHHHHHhcCCCCCcchhhcccc
Confidence 456777776778889999987643
No 251
>PRK00523 hypothetical protein; Provisional
Probab=44.40 E-value=74 Score=19.54 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045853 27 ISSVVCLILFLFYISYYLFTQL 48 (184)
Q Consensus 27 i~~~~~li~~~~~i~~~~~~~~ 48 (184)
++.+++.++..+|+....+.+.
T Consensus 12 i~~li~G~~~Gffiark~~~k~ 33 (72)
T PRK00523 12 IPLLIVGGIIGYFVSKKMFKKQ 33 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555554433
No 252
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=43.91 E-value=1.1e+02 Score=25.28 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=6.0
Q ss_pred cchhHHHHHHHHHH
Q 045853 14 EGLRLLVLTTPLVI 27 (184)
Q Consensus 14 ~~~~~~~~~~~~~i 27 (184)
....++++++.+++
T Consensus 37 ie~s~~~~~~~~~~ 50 (409)
T TIGR00540 37 IEMSITGLAIFFII 50 (409)
T ss_pred EEeeHHHHHHHHHH
Confidence 34445444433333
No 253
>PRK11827 hypothetical protein; Provisional
Probab=43.42 E-value=6.9 Score=23.16 Aligned_cols=18 Identities=28% Similarity=0.713 Sum_probs=12.3
Q ss_pred HHhcCCCccccccccccc
Q 045853 152 DWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 152 ~Wl~~~~~CP~CR~~i~~ 169 (184)
.||..--.||.|+.++..
T Consensus 3 ~~LLeILaCP~ckg~L~~ 20 (60)
T PRK11827 3 HRLLEIIACPVCNGKLWY 20 (60)
T ss_pred hHHHhheECCCCCCcCeE
Confidence 455555568888888764
No 254
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=42.98 E-value=1e+02 Score=23.30 Aligned_cols=32 Identities=19% Similarity=0.510 Sum_probs=18.3
Q ss_pred CCCCCc-cchhHHHHHHHHHHHHHHHHHHHHHH
Q 045853 8 STCPND-EGLRLLVLTTPLVISSVVCLILFLFY 39 (184)
Q Consensus 8 ~~~~~~-~~~~~~~~~~~~~i~~~~~li~~~~~ 39 (184)
+.|-.+ ++....+++|++.++++++.++|+--
T Consensus 119 ~~CEen~~K~amLIClIIIAVLfLICT~LfLST 151 (227)
T PF05399_consen 119 EICEENNNKMAMLICLIIIAVLFLICTLLFLST 151 (227)
T ss_pred hhhhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455333 55666666666666666666666533
No 255
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=42.82 E-value=12 Score=22.06 Aligned_cols=12 Identities=42% Similarity=1.099 Sum_probs=9.7
Q ss_pred CCcccccccccc
Q 045853 157 HSTCPLCRGRVR 168 (184)
Q Consensus 157 ~~~CP~CR~~i~ 168 (184)
+..||+|+..+.
T Consensus 2 k~~CPlCkt~~n 13 (61)
T PF05715_consen 2 KSLCPLCKTTLN 13 (61)
T ss_pred CccCCcccchhh
Confidence 467999999874
No 256
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=42.80 E-value=34 Score=28.52 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=13.1
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHH
Q 045853 12 NDEGLRLLVLTTPLVISSVVCLILF 36 (184)
Q Consensus 12 ~~~~~~~~~~~~~~~i~~~~~li~~ 36 (184)
+++|+-..-+.++|++.+++.++++
T Consensus 61 pNHGlhaagFfvaflvslVL~~l~~ 85 (429)
T PF12297_consen 61 PNHGLHAAGFFVAFLVSLVLTWLCF 85 (429)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHH
Confidence 4566666555555555444444333
No 257
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=42.23 E-value=13 Score=24.76 Aligned_cols=24 Identities=21% Similarity=0.402 Sum_probs=17.1
Q ss_pred cccccCcccccCCc-cceeecCCCc
Q 045853 120 STCVICLEEFRDGD-ECKVRSKCNH 143 (184)
Q Consensus 120 ~~C~ICl~~~~~~~-~~~~l~~C~H 143 (184)
..|+-|-.+|.-.+ .+.+.|.|+|
T Consensus 3 p~CP~C~seytY~dg~~~iCpeC~~ 27 (109)
T TIGR00686 3 PPCPKCNSEYTYHDGTQLICPSCLY 27 (109)
T ss_pred CcCCcCCCcceEecCCeeECccccc
Confidence 36999999987443 3466777777
No 258
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=42.21 E-value=10 Score=30.33 Aligned_cols=42 Identities=14% Similarity=0.407 Sum_probs=29.1
Q ss_pred CCcccccCcccccCC-------ccceeecCCCccccHhhHHHHhcCCCccccccc
Q 045853 118 KTSTCVICLEEFRDG-------DECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRG 165 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~-------~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 165 (184)
....|++|-..-..+ +..| |.+|.-|-..|--....||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~R------yL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLR------YLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCce------EEEcCCCCCcccccCccCCCCCC
Confidence 456899998875322 2233 44566677789888888999975
No 259
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=42.02 E-value=11 Score=28.42 Aligned_cols=7 Identities=14% Similarity=0.491 Sum_probs=2.6
Q ss_pred CCCCCCC
Q 045853 6 TPSTCPN 12 (184)
Q Consensus 6 ~~~~~~~ 12 (184)
++.+.++
T Consensus 27 d~~~~~~ 33 (221)
T PF08374_consen 27 DPASSRS 33 (221)
T ss_pred CCCcccc
Confidence 3333333
No 260
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=41.96 E-value=48 Score=25.86 Aligned_cols=10 Identities=10% Similarity=0.195 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 045853 39 YISYYLFTQL 48 (184)
Q Consensus 39 ~i~~~~~~~~ 48 (184)
.|.+.+..++
T Consensus 89 ~ig~p~~krk 98 (279)
T PF07271_consen 89 AIGIPIYKRK 98 (279)
T ss_pred hhcchhhhhh
Confidence 3333333333
No 261
>PHA03255 BDLF3; Provisional
Probab=41.81 E-value=88 Score=22.72 Aligned_cols=11 Identities=36% Similarity=0.359 Sum_probs=7.2
Q ss_pred CccchhHHHHH
Q 045853 12 NDEGLRLLVLT 22 (184)
Q Consensus 12 ~~~~~~~~~~~ 22 (184)
..+|+.+|.+.
T Consensus 178 ~~~glplwtlv 188 (234)
T PHA03255 178 LSYGLPLWTLV 188 (234)
T ss_pred cccCchHHHHH
Confidence 45778887743
No 262
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=41.78 E-value=11 Score=30.99 Aligned_cols=35 Identities=14% Similarity=0.451 Sum_probs=24.9
Q ss_pred CCcccccCcccccCCccceeecCCCccccHhhHHHHh
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWL 154 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl 154 (184)
...+|+||+-.|-..-..... |.-..|.+|+-+.-
T Consensus 73 r~~ecpicflyyps~~n~~rc--C~~~Ic~ecf~~~~ 107 (482)
T KOG2789|consen 73 RKTECPICFLYYPSAKNLVRC--CSETICGECFAPFG 107 (482)
T ss_pred ccccCceeeeecccccchhhh--hccchhhhheeccc
Confidence 346899999999875543333 77778888876653
No 263
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=41.76 E-value=9 Score=21.88 Aligned_cols=9 Identities=44% Similarity=1.350 Sum_probs=3.2
Q ss_pred ccccccccc
Q 045853 159 TCPLCRGRV 167 (184)
Q Consensus 159 ~CP~CR~~i 167 (184)
+||+|...+
T Consensus 26 tCP~C~a~~ 34 (54)
T PF09237_consen 26 TCPICGAVI 34 (54)
T ss_dssp E-TTT--EE
T ss_pred CCCcchhhc
Confidence 466665544
No 264
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=41.73 E-value=85 Score=22.29 Aligned_cols=19 Identities=5% Similarity=0.031 Sum_probs=11.1
Q ss_pred cccCCCCcccccCcccccC
Q 045853 113 DDAVNKTSTCVICLEEFRD 131 (184)
Q Consensus 113 ~~~~~~~~~C~ICl~~~~~ 131 (184)
.++...+...++++-+-..
T Consensus 91 F~dmGg~LSFslAlLD~~~ 109 (151)
T PF14584_consen 91 FEDMGGDLSFSLALLDDNN 109 (151)
T ss_pred cccccccceeeeEEEeCCC
Confidence 3444555667777766544
No 265
>PHA02692 hypothetical protein; Provisional
Probab=41.63 E-value=81 Score=19.21 Aligned_cols=12 Identities=8% Similarity=0.163 Sum_probs=5.4
Q ss_pred CccchhHHHHHH
Q 045853 12 NDEGLRLLVLTT 23 (184)
Q Consensus 12 ~~~~~~~~~~~~ 23 (184)
.+.+..++..++
T Consensus 39 ~~~~~~~~~~ii 50 (70)
T PHA02692 39 RSKGVPWTTVFL 50 (70)
T ss_pred ccCCcchHHHHH
Confidence 344555544333
No 266
>PRK01844 hypothetical protein; Provisional
Probab=41.61 E-value=83 Score=19.32 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045853 28 SSVVCLILFLFYISYYLFT 46 (184)
Q Consensus 28 ~~~~~li~~~~~i~~~~~~ 46 (184)
+.+++.++..+|+....+.
T Consensus 12 ~~li~G~~~Gff~ark~~~ 30 (72)
T PRK01844 12 VALVAGVALGFFIARKYMM 30 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444445555554444
No 267
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=41.13 E-value=53 Score=30.79 Aligned_cols=52 Identities=23% Similarity=0.523 Sum_probs=35.2
Q ss_pred CCcccccCcccccC---CccceeecCCCccccHhhHHHHhc-CCCccccccccccc
Q 045853 118 KTSTCVICLEEFRD---GDECKVRSKCNHIFHQTCMDDWLD-DHSTCPLCRGRVRR 169 (184)
Q Consensus 118 ~~~~C~ICl~~~~~---~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~ 169 (184)
....|-||-++... ++.-..+-.|+--.|..|.+-=.+ .++.||.|++...+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 44579999999753 333233334555689999843332 67889999998874
No 268
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=40.98 E-value=13 Score=26.49 Aligned_cols=45 Identities=22% Similarity=0.421 Sum_probs=29.8
Q ss_pred ccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 123 VICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 123 ~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
.||+.--...+..-.-|.=.+-||..|=.+-.. .||.|..+|...
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~---~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTIT---SCPNCSTPIRGD 52 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHHH---HCcCCCCCCCCc
Confidence 366666555444443333447799999877654 599999998644
No 269
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=40.42 E-value=1.2e+02 Score=24.95 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=5.5
Q ss_pred chhHHHHHHHHHHH
Q 045853 15 GLRLLVLTTPLVIS 28 (184)
Q Consensus 15 ~~~~~~~~~~~~i~ 28 (184)
...++++++.++++
T Consensus 38 e~sl~~~~~~~~~~ 51 (398)
T PRK10747 38 ETSVTGLAIILILA 51 (398)
T ss_pred EehHHHHHHHHHHH
Confidence 33444433333333
No 270
>PLN02248 cellulose synthase-like protein
Probab=40.39 E-value=62 Score=30.62 Aligned_cols=61 Identities=18% Similarity=0.343 Sum_probs=40.3
Q ss_pred ccCCCCccccc--CcccccCC---ccceeecCCCccccHhhHHHHhcCCCcccccccccccccCCCC
Q 045853 114 DAVNKTSTCVI--CLEEFRDG---DECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAWPSF 175 (184)
Q Consensus 114 ~~~~~~~~C~I--Cl~~~~~~---~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~~~~ 175 (184)
.....+..|++ |-.+...+ +++.-+ .|++..|.+|...-++....||-|+.+....+....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (1135)
T PLN02248 119 MAGAKGSSCAMPGCDGKVMRDERGEDLLPC-ECGFKICRDCYIDAVKSGGICPGCKEPYKVTDLDDE 184 (1135)
T ss_pred cCCCCCCcccccCcccccccccccccCCcc-cccchhHHhHhhhhhhcCCCCCCCcccccccccccc
Confidence 33345566776 44433322 222223 478999999999999888899999999866555444
No 271
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=40.28 E-value=12 Score=18.37 Aligned_cols=11 Identities=45% Similarity=1.256 Sum_probs=6.0
Q ss_pred ccccccccccc
Q 045853 159 TCPLCRGRVRR 169 (184)
Q Consensus 159 ~CP~CR~~i~~ 169 (184)
+||.|-..+..
T Consensus 1 ~CP~C~s~l~~ 11 (28)
T PF03119_consen 1 TCPVCGSKLVR 11 (28)
T ss_dssp B-TTT--BEEE
T ss_pred CcCCCCCEeEc
Confidence 48999988863
No 272
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=40.14 E-value=1.7e+02 Score=22.50 Aligned_cols=12 Identities=17% Similarity=0.229 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHh
Q 045853 38 FYISYYLFTQLY 49 (184)
Q Consensus 38 ~~i~~~~~~~~~ 49 (184)
+..++..|.+++
T Consensus 151 ~~~i~~~f~~~~ 162 (237)
T PF13748_consen 151 FLLILPRFARRN 162 (237)
T ss_pred HHHHHHHHHHHH
Confidence 333334444443
No 273
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=40.09 E-value=1e+02 Score=21.89 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=12.9
Q ss_pred CCccchhHHHHHHHHHHHHHHH
Q 045853 11 PNDEGLRLLVLTTPLVISSVVC 32 (184)
Q Consensus 11 ~~~~~~~~~~~~~~~~i~~~~~ 32 (184)
+...+-.++..+++++.+++++
T Consensus 74 ~~g~~~g~~~~imPlYtiGI~~ 95 (152)
T PF15361_consen 74 PGGSGKGLMGQIMPLYTIGIVL 95 (152)
T ss_pred CCCCCCchhhhHhHHHHHHHHH
Confidence 4444555656668876655543
No 274
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=39.84 E-value=7.2 Score=20.55 Aligned_cols=28 Identities=36% Similarity=0.626 Sum_probs=14.6
Q ss_pred cCCCccccHhhHHHHhcCCCccccccccc
Q 045853 139 SKCNHIFHQTCMDDWLDDHSTCPLCRGRV 167 (184)
Q Consensus 139 ~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i 167 (184)
+.|||.|-..--..= .....||.|...+
T Consensus 9 ~~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~ 36 (41)
T smart00834 9 EDCGHTFEVLQKISD-DPLATCPECGGDV 36 (41)
T ss_pred CCCCCEEEEEEecCC-CCCCCCCCCCCcc
Confidence 457776542211000 2345699998855
No 275
>PRK13718 conjugal transfer protein TrbE; Provisional
Probab=39.29 E-value=91 Score=19.50 Aligned_cols=8 Identities=38% Similarity=1.264 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 045853 39 YISYYLFT 46 (184)
Q Consensus 39 ~i~~~~~~ 46 (184)
++.|++|.
T Consensus 58 ~~ly~ffs 65 (84)
T PRK13718 58 FILYFFFS 65 (84)
T ss_pred HHHHHHHH
Confidence 33444443
No 276
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=38.43 E-value=8.2 Score=27.88 Aligned_cols=25 Identities=20% Similarity=0.512 Sum_probs=13.0
Q ss_pred ceeecCCCccccHhhHHHHhcCCCcccccccc
Q 045853 135 CKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGR 166 (184)
Q Consensus 135 ~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 166 (184)
+-+.+.|||++-. ..-..||+|..+
T Consensus 134 ~~vC~vCGy~~~g-------e~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEG-------EAPEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccC-------CCCCcCCCCCCh
Confidence 3455567764321 233458888643
No 277
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=38.37 E-value=13 Score=22.01 Aligned_cols=10 Identities=40% Similarity=1.371 Sum_probs=8.3
Q ss_pred cccccccccc
Q 045853 159 TCPLCRGRVR 168 (184)
Q Consensus 159 ~CP~CR~~i~ 168 (184)
-||+||.++.
T Consensus 10 aCP~~kg~L~ 19 (60)
T COG2835 10 ACPVCKGPLV 19 (60)
T ss_pred eccCcCCcce
Confidence 4999999875
No 278
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=38.26 E-value=78 Score=26.21 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045853 25 LVISSVVCLILFLFYISYYLFT 46 (184)
Q Consensus 25 ~~i~~~~~li~~~~~i~~~~~~ 46 (184)
+++-+++++++++++..++|+.
T Consensus 289 l~iPl~i~llL~llLs~Imc~r 310 (386)
T PF05510_consen 289 LAIPLIIALLLLLLLSYIMCCR 310 (386)
T ss_pred HHHHHHHHHHHHHHHHHHheec
Confidence 3333333333333333333433
No 279
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=37.87 E-value=56 Score=18.54 Aligned_cols=12 Identities=8% Similarity=0.033 Sum_probs=5.8
Q ss_pred HHHHHHHhhHHH
Q 045853 42 YYLFTQLYSSRI 53 (184)
Q Consensus 42 ~~~~~~~~~~r~ 53 (184)
.+-..+.+.+|-
T Consensus 20 I~~~~K~ygYkh 31 (50)
T PF12606_consen 20 ICTTLKAYGYKH 31 (50)
T ss_pred HHHHhhcccccc
Confidence 344455555444
No 280
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=37.84 E-value=8.9 Score=30.56 Aligned_cols=43 Identities=14% Similarity=0.323 Sum_probs=29.2
Q ss_pred CCcccccCcccccC--------CccceeecCCCccccHhhHHHHhcCCCcccccccc
Q 045853 118 KTSTCVICLEEFRD--------GDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGR 166 (184)
Q Consensus 118 ~~~~C~ICl~~~~~--------~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 166 (184)
....|++|-..-.. .+..|.+ +|.-|-..|--....||.|-..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL------~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYL------SCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEE------EcCCCCCcccccCccCCCCCCC
Confidence 34589999887532 1233444 5556777898888899999763
No 281
>PF07280 DUF1443: Protein of unknown function (DUF1443); InterPro: IPR009903 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf110; it is a family of uncharacterised viral proteins.
Probab=37.79 E-value=30 Score=18.94 Aligned_cols=11 Identities=9% Similarity=0.105 Sum_probs=4.2
Q ss_pred HHHHHHHHHHh
Q 045853 39 YISYYLFTQLY 49 (184)
Q Consensus 39 ~i~~~~~~~~~ 49 (184)
++.+.+..+.+
T Consensus 10 ~~~~l~~L~lN 20 (43)
T PF07280_consen 10 CVYVLYILKLN 20 (43)
T ss_pred HHHHHHHHHhh
Confidence 33333334444
No 282
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=37.78 E-value=13 Score=17.80 Aligned_cols=9 Identities=44% Similarity=1.184 Sum_probs=7.0
Q ss_pred ccccccccc
Q 045853 159 TCPLCRGRV 167 (184)
Q Consensus 159 ~CP~CR~~i 167 (184)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 588887776
No 283
>PRK10220 hypothetical protein; Provisional
Probab=37.73 E-value=20 Score=23.93 Aligned_cols=24 Identities=25% Similarity=0.582 Sum_probs=16.9
Q ss_pred cccccCcccccCCc-cceeecCCCc
Q 045853 120 STCVICLEEFRDGD-ECKVRSKCNH 143 (184)
Q Consensus 120 ~~C~ICl~~~~~~~-~~~~l~~C~H 143 (184)
..|+-|-.+|.-++ ...+.|.|+|
T Consensus 4 P~CP~C~seytY~d~~~~vCpeC~h 28 (111)
T PRK10220 4 PHCPKCNSEYTYEDNGMYICPECAH 28 (111)
T ss_pred CcCCCCCCcceEcCCCeEECCcccC
Confidence 35999999987544 3456677777
No 284
>PRK04023 DNA polymerase II large subunit; Validated
Probab=37.69 E-value=23 Score=32.91 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=34.4
Q ss_pred ccCCCCcccccCcccccCCccceeecCCCc-----cccHhhHHHHhcCCCccccccccccccc
Q 045853 114 DAVNKTSTCVICLEEFRDGDECKVRSKCNH-----IFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 114 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H-----~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
........|+=|-..... ..++.||. .||..| .+......||-|...+....
T Consensus 621 eVEVg~RfCpsCG~~t~~----frCP~CG~~Te~i~fCP~C--G~~~~~y~CPKCG~El~~~s 677 (1121)
T PRK04023 621 EVEIGRRKCPSCGKETFY----RRCPFCGTHTEPVYRCPRC--GIEVEEDECEKCGREPTPYS 677 (1121)
T ss_pred eecccCccCCCCCCcCCc----ccCCCCCCCCCcceeCccc--cCcCCCCcCCCCCCCCCccc
Confidence 334445579888887533 56777983 588888 34444566999988775443
No 285
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.25 E-value=10 Score=31.82 Aligned_cols=37 Identities=22% Similarity=0.567 Sum_probs=27.6
Q ss_pred cccccCcccccCCccce----eecCCCccccHhhHHHHhcC
Q 045853 120 STCVICLEEFRDGDECK----VRSKCNHIFHQTCMDDWLDD 156 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~----~l~~C~H~FH~~Ci~~Wl~~ 156 (184)
..|+.|....+.++..- ...+|+|.||..|+..|-..
T Consensus 227 k~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 227 KECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred ccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 35999999988776322 22259999999998888763
No 286
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=37.02 E-value=1.1e+02 Score=20.66 Aligned_cols=24 Identities=4% Similarity=0.088 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045853 24 PLVISSVVCLILFLFYISYYLFTQ 47 (184)
Q Consensus 24 ~~~i~~~~~li~~~~~i~~~~~~~ 47 (184)
.++++++++.-.+.+.++.|.++.
T Consensus 13 a~mVlGFi~fWPlGla~Lay~iw~ 36 (115)
T PF11014_consen 13 AAMVLGFIVFWPLGLALLAYMIWG 36 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444443
No 287
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=36.87 E-value=60 Score=18.13 Aligned_cols=13 Identities=8% Similarity=0.064 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHhh
Q 045853 38 FYISYYLFTQLYS 50 (184)
Q Consensus 38 ~~i~~~~~~~~~~ 50 (184)
+.+.++.++.+++
T Consensus 24 igiv~wa~~p~~k 36 (48)
T cd01324 24 LGVVVWAFRPGRK 36 (48)
T ss_pred HHHHHHHhCCCcc
Confidence 3344444444443
No 288
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=36.83 E-value=82 Score=26.41 Aligned_cols=46 Identities=20% Similarity=0.397 Sum_probs=30.0
Q ss_pred CcccCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 112 NDDAVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 112 ~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
..+....+..|++|...|..-+.++++-.=.-.|| |-.|..++...
T Consensus 121 ~d~t~~~~Y~Cp~C~kkyt~Lea~~L~~~~~~~F~-------------C~~C~gelveD 166 (436)
T KOG2593|consen 121 RDDTNVAGYVCPNCQKKYTSLEALQLLDNETGEFH-------------CENCGGELVED 166 (436)
T ss_pred hhccccccccCCccccchhhhHHHHhhcccCceEE-------------EecCCCchhcc
Confidence 34445566789999999998766665532223344 77777777544
No 289
>PRK09458 pspB phage shock protein B; Provisional
Probab=36.39 E-value=96 Score=19.23 Aligned_cols=8 Identities=13% Similarity=0.135 Sum_probs=3.2
Q ss_pred HHHHHHhh
Q 045853 43 YLFTQLYS 50 (184)
Q Consensus 43 ~~~~~~~~ 50 (184)
++.++.++
T Consensus 23 ~LHY~sk~ 30 (75)
T PRK09458 23 WLHYRSKR 30 (75)
T ss_pred HHhhcccc
Confidence 33444443
No 290
>PF14770 TMEM18: Transmembrane protein 18
Probab=36.33 E-value=1.4e+02 Score=20.40 Aligned_cols=29 Identities=21% Similarity=0.538 Sum_probs=16.7
Q ss_pred CCCccchhHHHHHH-HHHHHHHHHHHHHHH
Q 045853 10 CPNDEGLRLLVLTT-PLVISSVVCLILFLF 38 (184)
Q Consensus 10 ~~~~~~~~~~~~~~-~~~i~~~~~li~~~~ 38 (184)
|=|+.|....++++ |+++..+++++..+.
T Consensus 74 YFDs~G~Fisvv~s~PlLl~~~ii~~~~l~ 103 (123)
T PF14770_consen 74 YFDSSGVFISVVFSAPLLLNCLIILVNWLY 103 (123)
T ss_pred CcCCCCeeehHHHHHhHHHHHHHHHHHHHH
Confidence 44777776665543 666666655544443
No 291
>PF15018 InaF-motif: TRP-interacting helix
Probab=35.74 E-value=50 Score=17.57 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045853 25 LVISSVVCLILFLFYISYYLF 45 (184)
Q Consensus 25 ~~i~~~~~li~~~~~i~~~~~ 45 (184)
+..++.+.+..+.+.+.+.++
T Consensus 11 ~~Yl~~VSl~Ai~LsiYY~f~ 31 (38)
T PF15018_consen 11 VAYLFSVSLAAIVLSIYYIFF 31 (38)
T ss_pred HHHHHHHHHHHHHHHHHHhee
Confidence 334444444444444434333
No 292
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=35.47 E-value=12 Score=30.72 Aligned_cols=50 Identities=20% Similarity=0.534 Sum_probs=0.0
Q ss_pred CcccccCccccc-------------CCc---cceeecCCCccccHhhHHHHhc---------CCCccccccccccc
Q 045853 119 TSTCVICLEEFR-------------DGD---ECKVRSKCNHIFHQTCMDDWLD---------DHSTCPLCRGRVRR 169 (184)
Q Consensus 119 ~~~C~ICl~~~~-------------~~~---~~~~l~~C~H~FH~~Ci~~Wl~---------~~~~CP~CR~~i~~ 169 (184)
..+|++|+..-. .+. +.... ||||+--+....-|-+ -+..||.|-.+|..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~-PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFN-PCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeec-ccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 568999995421 111 12233 6999999999999987 13469999988863
No 293
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=35.44 E-value=23 Score=27.39 Aligned_cols=39 Identities=21% Similarity=0.428 Sum_probs=27.9
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcC--CCcccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD--HSTCPL 162 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~--~~~CP~ 162 (184)
.|+|=...+.. .++ -..|||+|-.+=|...+.. ...||+
T Consensus 178 rdPis~~~I~n--Pvi-SkkC~HvydrDsI~~~l~~~~~i~CPv 218 (262)
T KOG2979|consen 178 RDPISKKPIVN--PVI-SKKCGHVYDRDSIMQILCDEITIRCPV 218 (262)
T ss_pred cCchhhhhhhc--hhh-hcCcCcchhhhhHHHHhccCceeeccc
Confidence 57776655555 122 2379999999999999875 445886
No 294
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.37 E-value=1.5e+02 Score=20.50 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=6.0
Q ss_pred HhhhHHHHhhhhHHHH
Q 045853 54 QTQNQDIEQGLSSQQQ 69 (184)
Q Consensus 54 ~~~~~~~~~~~~~~~~ 69 (184)
+.+.........+.++
T Consensus 40 q~ELe~~K~~ld~~rq 55 (138)
T COG3105 40 QYELEKVKAQLDEYRQ 55 (138)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 295
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=35.34 E-value=81 Score=29.75 Aligned_cols=51 Identities=22% Similarity=0.571 Sum_probs=33.9
Q ss_pred CcccccCcccccC---CccceeecCCCccccHhhHHHHh-cCCCccccccccccc
Q 045853 119 TSTCVICLEEFRD---GDECKVRSKCNHIFHQTCMDDWL-DDHSTCPLCRGRVRR 169 (184)
Q Consensus 119 ~~~C~ICl~~~~~---~~~~~~l~~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~i~~ 169 (184)
...|-||-++... ++.-..+-.|+-=.|..|.+-=- ..++.||.|++...+
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 3479999999753 33322233455558999984322 367889999998863
No 296
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=35.27 E-value=34 Score=22.53 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=25.8
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD 155 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~ 155 (184)
.|.||-.++..|+.-....+ -.-|.+|+..=..
T Consensus 4 kC~iCg~~I~~gqlFTF~~k--G~VH~~C~~~~~~ 36 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKK--GPVHYECFREKAS 36 (101)
T ss_pred EEEecCCeeeecceEEEecC--CcEeHHHHHHHHh
Confidence 59999999999887666643 5689999876544
No 297
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=35.24 E-value=20 Score=27.39 Aligned_cols=47 Identities=26% Similarity=0.365 Sum_probs=33.1
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhc--CCCcccc--ccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD--DHSTCPL--CRGRVRR 169 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~--~~~~CP~--CR~~i~~ 169 (184)
..|+|=+..+... .+-..|+|.|-.+=|...++ ..+.||. |-+.+..
T Consensus 190 nrCpitl~p~~~p---ils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~ 240 (275)
T COG5627 190 NRCPITLNPDFYP---ILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVV 240 (275)
T ss_pred ccCCcccCcchhH---HHHhhhcccccHHHHHHHhcCCceeecchhhcchheec
Confidence 3699977776551 33347999999999999998 4556774 6554443
No 298
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=35.05 E-value=29 Score=20.35 Aligned_cols=23 Identities=30% Similarity=0.746 Sum_probs=18.8
Q ss_pred CcccccccccccccCCCCCCCCC
Q 045853 158 STCPLCRGRVRRIAWPSFTTADD 180 (184)
Q Consensus 158 ~~CP~CR~~i~~~~~~~~~~~~~ 180 (184)
..||.|=........+.|++.|.
T Consensus 18 e~Cp~CG~~t~~~~PprFSPeD~ 40 (59)
T COG2260 18 EKCPVCGGDTKVPHPPRFSPEDK 40 (59)
T ss_pred ccCCCCCCccccCCCCCCCccch
Confidence 57999988888888888888774
No 299
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=34.87 E-value=23 Score=23.31 Aligned_cols=24 Identities=25% Similarity=0.714 Sum_probs=12.8
Q ss_pred cCCCccccHhhHHHHhcCCCcccccccc
Q 045853 139 SKCNHIFHQTCMDDWLDDHSTCPLCRGR 166 (184)
Q Consensus 139 ~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 166 (184)
..|||+|-.. +.-+. +-||-|-..
T Consensus 6 trCG~vf~~g--~~~il--~GCp~CG~n 29 (112)
T COG3364 6 TRCGEVFDDG--SEEIL--SGCPKCGCN 29 (112)
T ss_pred cccccccccc--cHHHH--ccCccccch
Confidence 3577777765 22222 247777543
No 300
>PTZ00370 STEVOR; Provisional
Probab=34.76 E-value=86 Score=24.82 Aligned_cols=36 Identities=8% Similarity=0.201 Sum_probs=17.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045853 14 EGLRLLVLTTPLVISSVVCLILFLFYISYYLFTQLY 49 (184)
Q Consensus 14 ~~~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~ 49 (184)
.|......+..|.=.++..++++++.+.+.+++-..
T Consensus 243 agtAAtaAsaaF~Pygiaalvllil~vvliilYiwl 278 (296)
T PTZ00370 243 AGTAASAASSAFYPYGIAALVLLILAVVLIILYIWL 278 (296)
T ss_pred cchHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334445555555555555555555544333
No 301
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=34.70 E-value=72 Score=16.57 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045853 25 LVISSVVCLILFLFYISYYL 44 (184)
Q Consensus 25 ~~i~~~~~li~~~~~i~~~~ 44 (184)
++...+++++...++++.|+
T Consensus 8 fiAt~Lfi~iPt~FLlilYv 27 (35)
T PRK04989 8 FVASLLFVLVPTVFLIILYI 27 (35)
T ss_pred HHHHHHHHHHHHHHHHHHhe
Confidence 34444444445555554444
No 302
>PHA03286 envelope glycoprotein E; Provisional
Probab=34.55 E-value=67 Score=27.12 Aligned_cols=11 Identities=36% Similarity=0.806 Sum_probs=5.5
Q ss_pred HHhcCCCcccccc
Q 045853 152 DWLDDHSTCPLCR 164 (184)
Q Consensus 152 ~Wl~~~~~CP~CR 164 (184)
.||. .-||-=|
T Consensus 476 ~~~~--~~~p~~~ 486 (492)
T PHA03286 476 AWLA--DGGPAAR 486 (492)
T ss_pred hhhh--cCCchhh
Confidence 4766 2355443
No 303
>COG3771 Predicted membrane protein [Function unknown]
Probab=34.54 E-value=1.3e+02 Score=19.32 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhhHHHHh
Q 045853 38 FYISYYLFTQLYSSRIQT 55 (184)
Q Consensus 38 ~~i~~~~~~~~~~~r~~~ 55 (184)
++-.+++-.+.+..|..+
T Consensus 59 i~g~fy~k~~l~~~~l~r 76 (97)
T COG3771 59 ICGLFYLKVRLSLMRLER 76 (97)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344434444444433
No 304
>KOG3352 consensus Cytochrome c oxidase, subunit Vb/COX4 [Energy production and conversion]
Probab=34.44 E-value=21 Score=25.25 Aligned_cols=8 Identities=38% Similarity=0.825 Sum_probs=4.7
Q ss_pred cccCccccc
Q 045853 122 CVICLEEFR 130 (184)
Q Consensus 122 C~ICl~~~~ 130 (184)
| +|-++-.
T Consensus 114 C-~c~eD~~ 121 (153)
T KOG3352|consen 114 C-GCEEDSH 121 (153)
T ss_pred e-cccCCCc
Confidence 6 6666543
No 305
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=34.40 E-value=21 Score=31.40 Aligned_cols=30 Identities=30% Similarity=0.784 Sum_probs=23.1
Q ss_pred cCCCccccHhhHHHHhc-----CCCcccccccccc
Q 045853 139 SKCNHIFHQTCMDDWLD-----DHSTCPLCRGRVR 168 (184)
Q Consensus 139 ~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~i~ 168 (184)
-.|+-.||..|+..|+. +.-.||-||....
T Consensus 39 ~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~ 73 (694)
T KOG4443|consen 39 SDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEA 73 (694)
T ss_pred hhhcccCCcchhhHHHhHHHhcCCcccCCceeeee
Confidence 36889999999999986 2345888887553
No 306
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=34.26 E-value=25 Score=29.08 Aligned_cols=21 Identities=14% Similarity=0.420 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 045853 29 SVVCLILFLFYISYYLFTQLY 49 (184)
Q Consensus 29 ~~~~li~~~~~i~~~~~~~~~ 49 (184)
++.+.|+.++.+.++++.+++
T Consensus 393 l~p~~il~~~~~~~~~~v~rr 413 (436)
T PTZ00208 393 LVPAIILAIIAVAFFIMVKRR 413 (436)
T ss_pred HHHHHHHHHHHHHhheeeeec
Confidence 333333334444444444443
No 307
>PF04135 Nop10p: Nucleolar RNA-binding protein, Nop10p family; InterPro: IPR007264 H/ACA ribonucleoprotein particles (RNPs) are a family of RNA pseudouridine synthases that specify modification sites through guide RNAs. More than 100 mammalian H/ACA RNAs form an equal number of ribonucleoproteins (RNPs) by associating with the same four core proteins: Cbf5, Gar1, Nhp2 and Nop10. The function of these H/ACA RNPs is essential for biogenesis of the ribosome, splicing of precursor mRNAs (pre-mRNAs), maintenance of telomeres and probably for additional cellular processes []. Recent crystal structures of archaeal H/ACA protein complexes show how the same four proteins accommodate >100 distinct but related H/ACA RNAs []. The complex contains a stable core composed of Cbf5 and Nop10, to which Gar1 and Nhp2 subsequently bind, the complex interacts with snoRNAs []. In eukaryotes Nop10 is a nucleolar protein that is specifically associated with H/ACA snoRNAs. It is essential for normal 18S rRNA production and rRNA pseudouridylation by the ribonucleoprotein particles containing H/ACA snoRNAs (H/ACA snoRNPs). Nop10 is probably necessary for the stability of these RNPs [].; PDB: 2RFK_B 3LWR_B 2HVY_C 3HAX_C 3MQK_B 3LWO_B 3LWV_B 3HAY_C 3HJY_B 2EY4_E ....
Probab=34.21 E-value=41 Score=19.32 Aligned_cols=25 Identities=28% Similarity=0.628 Sum_probs=19.5
Q ss_pred CcccccccccccccCCCCCCCCCCC
Q 045853 158 STCPLCRGRVRRIAWPSFTTADDWS 182 (184)
Q Consensus 158 ~~CP~CR~~i~~~~~~~~~~~~~~~ 182 (184)
..||.|-.+......+.|++.|..|
T Consensus 18 ~~cp~cG~~T~~ahPaRFSPdDky~ 42 (53)
T PF04135_consen 18 DKCPPCGGPTESAHPARFSPDDKYS 42 (53)
T ss_dssp SBBTTTSSBSEESSSSSS-TTTTTC
T ss_pred CccCCCCCCCcCCcCCCCCCCCccH
Confidence 4799999988888888888887654
No 308
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=34.06 E-value=48 Score=21.53 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045853 25 LVISSVVCLILFLFYISYYLFTQ 47 (184)
Q Consensus 25 ~~i~~~~~li~~~~~i~~~~~~~ 47 (184)
++++++++++.|-+.+++..|.+
T Consensus 8 l~l~g~llligftivvl~vyfgr 30 (126)
T PF13120_consen 8 LLLIGTLLLIGFTIVVLLVYFGR 30 (126)
T ss_pred HHHHHHHHHHHHHHHhhhheecc
Confidence 33444444444444444444443
No 309
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=33.71 E-value=27 Score=22.38 Aligned_cols=9 Identities=33% Similarity=0.597 Sum_probs=4.3
Q ss_pred CCccchhHH
Q 045853 11 PNDEGLRLL 19 (184)
Q Consensus 11 ~~~~~~~~~ 19 (184)
|++.++.+-
T Consensus 27 p~ss~~~ws 35 (91)
T PF01708_consen 27 PSSSGLPWS 35 (91)
T ss_pred CCCCCCcce
Confidence 444455443
No 310
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=33.66 E-value=1.9e+02 Score=21.16 Aligned_cols=18 Identities=33% Similarity=0.244 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhhHHHH
Q 045853 37 LFYISYYLFTQLYSSRIQ 54 (184)
Q Consensus 37 ~~~i~~~~~~~~~~~r~~ 54 (184)
+++++|+.+++-...+.+
T Consensus 48 ~l~i~Y~~iWqPl~~~~~ 65 (178)
T PRK09731 48 FSVGYYVLIWQPLSERIE 65 (178)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 344445555555544443
No 311
>PF11682 DUF3279: Protein of unknown function (DUF3279); InterPro: IPR021696 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=33.31 E-value=22 Score=24.54 Aligned_cols=22 Identities=27% Similarity=0.738 Sum_probs=15.7
Q ss_pred CCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 140 KCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 140 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
-|+|.||- .+-||.|+.-|...
T Consensus 102 ~C~~~Y~G---------eK~C~~C~tGiYS~ 123 (128)
T PF11682_consen 102 MCGNHYHG---------EKYCPKCGTGIYSI 123 (128)
T ss_pred cCCCccCc---------CEecCCCCCcccce
Confidence 37777774 46799998877644
No 312
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=32.98 E-value=1.7e+02 Score=24.27 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=13.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 045853 13 DEGLRLLVLTTPLVISSVVCLILFLFYI 40 (184)
Q Consensus 13 ~~~~~~~~~~~~~~i~~~~~li~~~~~i 40 (184)
....+++.++++++++++++.++.+++.
T Consensus 36 ~ie~Sl~~lv~~~ii~lvv~~~l~~~l~ 63 (400)
T COG3071 36 NIEMSLTTLVIFLIIALVVLYLLEWLLR 63 (400)
T ss_pred eeeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444444333
No 313
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=32.79 E-value=1.6e+02 Score=19.96 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 045853 23 TPLVISSVVCLILFLF 38 (184)
Q Consensus 23 ~~~~i~~~~~li~~~~ 38 (184)
++++|..+..+.+..+
T Consensus 86 Lp~VIGGLcaL~Laam 101 (126)
T PF03229_consen 86 LPLVIGGLCALTLAAM 101 (126)
T ss_pred hhhhhhHHHHHHHHHH
Confidence 4555555554444333
No 314
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=32.39 E-value=1.8e+02 Score=20.56 Aligned_cols=13 Identities=15% Similarity=0.036 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHhh
Q 045853 38 FYISYYLFTQLYS 50 (184)
Q Consensus 38 ~~i~~~~~~~~~~ 50 (184)
.+++.|.+.+...
T Consensus 113 g~~~g~~~~r~~~ 125 (154)
T PRK10862 113 GGVGGFLLARGLS 125 (154)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 315
>PF10204 DuoxA: Dual oxidase maturation factor; InterPro: IPR018469 DuoxA (Dual oxidase maturation factor) is the essential protein necessary for the final release of DUOX2 (an NADPH:O2 oxidoreductase flavoprotein) from the endoplasmic reticulum. Dual oxidases (DUOX1 and DUOX2) constitute the catalytic core of the hydrogen peroxide generator, which generates H2O2 at the apical membrane of thyroid follicular cells, essential for iodination of thyroglobulin by thyroid peroxidases. DuoxA carries five membrane-integral regions including a reverse signal-anchor with external N terminus (type III) and two N-glycosylation sites []. It is conserved from nematodes to humans.; GO: 0015031 protein transport, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=32.26 E-value=80 Score=24.92 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=17.0
Q ss_pred CCCCCCCCCCCccchhHHHHHHHHHHH
Q 045853 2 PFAATPSTCPNDEGLRLLVLTTPLVIS 28 (184)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~i~ 28 (184)
|||..+-|...-+...+.++++++++.
T Consensus 1 pfy~~~rt~~~~dv~~l~ii~vFl~l~ 27 (281)
T PF10204_consen 1 PFYPQNRTPVTFDVPLLIIILVFLTLA 27 (281)
T ss_pred CCCCCCCCCCccchhHHHHHHHHHHHH
Confidence 788888888776666555444444333
No 316
>COG4966 PilW Tfp pilus assembly protein PilW [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.24 E-value=69 Score=25.72 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=19.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 045853 13 DEGLRLLVLTTPLVISSVVCLILFLFYISYYLFTQLYSSRIQT 55 (184)
Q Consensus 13 ~~~~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r~~~ 55 (184)
..|+.+.-+++.++|.+++ +...+.+|+-.++.....+.
T Consensus 12 qrG~SLIELMIallIgliv----L~av~s~y~~sr~~y~~~~~ 50 (318)
T COG4966 12 QRGFSLIELMIALLIGLIV----LLAVGSLYLSSRQLYTTLAD 50 (318)
T ss_pred cCCccHHHHHHHHHHHHHH----HHHHhheeeehhHHHHHHhh
Confidence 5677775555444444444 34444444444444444433
No 317
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=32.14 E-value=16 Score=19.44 Aligned_cols=14 Identities=21% Similarity=0.712 Sum_probs=9.9
Q ss_pred cccccccccccccC
Q 045853 159 TCPLCRGRVRRIAW 172 (184)
Q Consensus 159 ~CP~CR~~i~~~~~ 172 (184)
.||.|+..+....+
T Consensus 1 ~CP~C~~~l~~~~~ 14 (41)
T PF13453_consen 1 KCPRCGTELEPVRL 14 (41)
T ss_pred CcCCCCcccceEEE
Confidence 48999887765544
No 318
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=31.74 E-value=73 Score=27.52 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhHHHHh
Q 045853 37 LFYISYYLFTQLYSSRIQT 55 (184)
Q Consensus 37 ~~~i~~~~~~~~~~~r~~~ 55 (184)
+++...++++++...|+..
T Consensus 14 ~~~~~g~~lRkk~~~rI~~ 32 (570)
T COG4477 14 AAYAVGYLLRKKNYQRIDK 32 (570)
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 3344445555555555543
No 319
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=31.51 E-value=29 Score=26.83 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=17.4
Q ss_pred ccccCcccccCCccceeecCCCccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIF 145 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~F 145 (184)
.|++|-..+..++.-..+ ..||.|
T Consensus 4 ~CP~C~~~l~~~~~~~~C-~~~h~f 27 (272)
T PRK11088 4 QCPLCHQPLTLEENSWIC-PQNHQF 27 (272)
T ss_pred cCCCCCcchhcCCCEEEc-CCCCCC
Confidence 599999999765543333 467988
No 320
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=31.48 E-value=90 Score=16.69 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=8.0
Q ss_pred hhHHHHHHHHHHHHHHH
Q 045853 16 LRLLVLTTPLVISSVVC 32 (184)
Q Consensus 16 ~~~~~~~~~~~i~~~~~ 32 (184)
+.+.+++.|++++++..
T Consensus 5 l~fa~iMVPVvma~ilg 21 (41)
T PF10766_consen 5 LAFAVIMVPVVMALILG 21 (41)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444555555444443
No 321
>PHA03235 DNA packaging protein UL33; Provisional
Probab=31.39 E-value=1.3e+02 Score=24.92 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=10.2
Q ss_pred CCCCCCCccchhHHH
Q 045853 6 TPSTCPNDEGLRLLV 20 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~ 20 (184)
-.++|+.++++....
T Consensus 18 ~~~~c~~~~~~~~~~ 32 (409)
T PHA03235 18 VNDTCVPTEGLSAAR 32 (409)
T ss_pred cCCCCCchhhhhhhH
Confidence 457898888766533
No 322
>KOG4482 consensus Sarcoglycan complex, alpha/epsilon subunits [Function unknown]
Probab=31.28 E-value=1.2e+02 Score=25.18 Aligned_cols=26 Identities=19% Similarity=0.149 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045853 22 TTPLVISSVVCLILFLFYISYYLFTQ 47 (184)
Q Consensus 22 ~~~~~i~~~~~li~~~~~i~~~~~~~ 47 (184)
+..+.+.+.+.+++++++..++|+.+
T Consensus 298 ~~tfaIpl~Valll~~~La~imc~rr 323 (449)
T KOG4482|consen 298 LHTFAIPLGVALLLVLALAYIMCCRR 323 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444444444444444444444443
No 323
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=31.18 E-value=2.8 Score=27.36 Aligned_cols=8 Identities=25% Similarity=0.750 Sum_probs=3.5
Q ss_pred CCCCCCCC
Q 045853 3 FAATPSTC 10 (184)
Q Consensus 3 ~~~~~~~~ 10 (184)
|+.+.+.|
T Consensus 46 Y~~~~~~C 53 (96)
T PTZ00382 46 FSLDNGKC 53 (96)
T ss_pred cccCCCcc
Confidence 33344445
No 324
>PF09356 Phage_BR0599: Phage conserved hypothetical protein BR0599; InterPro: IPR018964 This entry describes the C-terminal region of a family of proteins found almost exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus (Rhodopseudomonas capsulata) gene transfer agent, which packages DNA. An apparent exception is Wolbachia pipientis wMel, a bacterial endosymbiont of the fruit fly, which has several candidate phage-related genes physically separate from obvious prophage regions.
Probab=31.11 E-value=53 Score=20.52 Aligned_cols=25 Identities=24% Similarity=0.599 Sum_probs=20.0
Q ss_pred cccCCccceeecCCCccccHhhHHHH
Q 045853 128 EFRDGDECKVRSKCNHIFHQTCMDDW 153 (184)
Q Consensus 128 ~~~~~~~~~~l~~C~H~FH~~Ci~~W 153 (184)
....++.+.+.+.|.|.| ..|..++
T Consensus 40 ~~~~G~~v~l~~GCDkt~-~tC~~kF 64 (80)
T PF09356_consen 40 GLAVGDTVTLYPGCDKTF-ATCRAKF 64 (80)
T ss_pred cCCCCCEEEEEeCCCCCH-HHHHHHh
Confidence 455688889999999987 8887665
No 325
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=31.03 E-value=71 Score=23.56 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=9.6
Q ss_pred ccHhhHHHHhc--CCCcccc
Q 045853 145 FHQTCMDDWLD--DHSTCPL 162 (184)
Q Consensus 145 FH~~Ci~~Wl~--~~~~CP~ 162 (184)
-..+-+..||. ++..+|+
T Consensus 124 ~~G~~~R~~L~~Lr~~~~p~ 143 (186)
T PF07406_consen 124 LPGENFRSYLLDLRNSSTPL 143 (186)
T ss_pred cccccHHHHHHHHHhccCCc
Confidence 44566777873 3334443
No 326
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=30.64 E-value=24 Score=23.44 Aligned_cols=15 Identities=27% Similarity=0.569 Sum_probs=11.5
Q ss_pred cccccCcccccCCcc
Q 045853 120 STCVICLEEFRDGDE 134 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~ 134 (184)
..|+.|-++|.-.|.
T Consensus 4 p~cp~c~sEytYed~ 18 (112)
T COG2824 4 PPCPKCNSEYTYEDG 18 (112)
T ss_pred CCCCccCCceEEecC
Confidence 369999999886554
No 327
>PHA03164 hypothetical protein; Provisional
Probab=30.57 E-value=35 Score=21.10 Aligned_cols=8 Identities=38% Similarity=1.194 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 045853 35 LFLFYISY 42 (184)
Q Consensus 35 ~~~~~i~~ 42 (184)
++++++++
T Consensus 72 Lfiifvly 79 (88)
T PHA03164 72 LFIIFVLY 79 (88)
T ss_pred HHHHHHHH
Confidence 33344433
No 328
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=30.40 E-value=1.9e+02 Score=20.13 Aligned_cols=7 Identities=14% Similarity=0.572 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 045853 38 FYISYYL 44 (184)
Q Consensus 38 ~~i~~~~ 44 (184)
++++|.+
T Consensus 17 vL~I~li 23 (139)
T COG4768 17 VLVIYLI 23 (139)
T ss_pred HHHHHHH
Confidence 3333333
No 329
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=30.21 E-value=90 Score=24.15 Aligned_cols=12 Identities=17% Similarity=0.664 Sum_probs=7.1
Q ss_pred HHHHhcCCCccc
Q 045853 150 MDDWLDDHSTCP 161 (184)
Q Consensus 150 i~~Wl~~~~~CP 161 (184)
.+.|+++...=|
T Consensus 216 f~~W~~~~~~~~ 227 (247)
T COG1622 216 FDAWVAEVKAAA 227 (247)
T ss_pred HHHHHHhhhhcc
Confidence 777876444333
No 330
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=30.12 E-value=19 Score=22.73 Aligned_cols=48 Identities=27% Similarity=0.505 Sum_probs=8.1
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhc-------------CCCcccccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD-------------DHSTCPLCRGRVR 168 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-------------~~~~CP~CR~~i~ 168 (184)
+|.+|-..|..-+.++.-..=.|.|.......-.. ....|++|.+...
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~ 61 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFR 61 (100)
T ss_dssp ------------------------------------------------SSEEBSSSS-EES
T ss_pred CccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccCCCCc
Confidence 48888888887666555444556665442111111 1356999988754
No 331
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.81 E-value=83 Score=22.34 Aligned_cols=7 Identities=14% Similarity=0.131 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 045853 42 YYLFTQL 48 (184)
Q Consensus 42 ~~~~~~~ 48 (184)
+++++..
T Consensus 24 ~~~~~~s 30 (161)
T COG5353 24 ALFFWKS 30 (161)
T ss_pred HHHHhHh
Confidence 3334433
No 332
>PHA02655 hypothetical protein; Provisional
Probab=29.81 E-value=27 Score=21.27 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 045853 22 TTPLVISSVV 31 (184)
Q Consensus 22 ~~~~~i~~~~ 31 (184)
+++++++.+.
T Consensus 69 lipfvivmis 78 (94)
T PHA02655 69 LIPFVIVMIS 78 (94)
T ss_pred HHHHHHHHHH
Confidence 3344443333
No 333
>CHL00080 psbM photosystem II protein M
Probab=29.69 E-value=89 Score=16.09 Aligned_cols=20 Identities=15% Similarity=0.434 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045853 25 LVISSVVCLILFLFYISYYL 44 (184)
Q Consensus 25 ~~i~~~~~li~~~~~i~~~~ 44 (184)
++...+++++...++++.|+
T Consensus 8 fiAt~LFi~iPt~FLlilyv 27 (34)
T CHL00080 8 FIATALFILVPTAFLLIIYV 27 (34)
T ss_pred HHHHHHHHHHHHHHHHHhhe
Confidence 33334444444444444443
No 334
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=29.50 E-value=39 Score=22.02 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=19.6
Q ss_pred CCccccHhhHHHHhcCCCcccccccccccc
Q 045853 141 CNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 141 C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
||+--|.-=+.++-. -..||.|+.+..+.
T Consensus 65 CGvC~~~LT~~EY~~-~~~Cp~C~spFNp~ 93 (105)
T COG4357 65 CGVCRKLLTRAEYGM-CGSCPYCQSPFNPG 93 (105)
T ss_pred hhhhhhhhhHHHHhh-cCCCCCcCCCCCcc
Confidence 777666666666643 24599999887643
No 335
>PLN02400 cellulose synthase
Probab=29.36 E-value=69 Score=30.23 Aligned_cols=52 Identities=25% Similarity=0.527 Sum_probs=33.8
Q ss_pred CcccccCcccccCC--cccee-ecCCCccccHhhHHHHh-cCCCcccccccccccc
Q 045853 119 TSTCVICLEEFRDG--DECKV-RSKCNHIFHQTCMDDWL-DDHSTCPLCRGRVRRI 170 (184)
Q Consensus 119 ~~~C~ICl~~~~~~--~~~~~-l~~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~i~~~ 170 (184)
...|-||-++.... .++.+ +-.|+-=-|..|.+-=- ..++.||-||+...+-
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~ 91 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRH 91 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccc
Confidence 34799999997532 23333 33455558889983222 2678899999988633
No 336
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=29.06 E-value=1.4e+02 Score=24.95 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=7.3
Q ss_pred CCCCCCCCCCccc
Q 045853 3 FAATPSTCPNDEG 15 (184)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (184)
|.+.+|+..+.+.
T Consensus 1 ~~~~~~~F~p~~~ 13 (406)
T PF04906_consen 1 FQPVSSTFNPQDE 13 (406)
T ss_pred CCCCCCCCCCCCH
Confidence 3456677744444
No 337
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=28.76 E-value=43 Score=17.23 Aligned_cols=11 Identities=36% Similarity=0.763 Sum_probs=6.5
Q ss_pred ccccCcccccC
Q 045853 121 TCVICLEEFRD 131 (184)
Q Consensus 121 ~C~ICl~~~~~ 131 (184)
+|+-|-..|..
T Consensus 4 ~CP~C~~~~~v 14 (38)
T TIGR02098 4 QCPNCKTSFRV 14 (38)
T ss_pred ECCCCCCEEEe
Confidence 46666665553
No 338
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=28.71 E-value=33 Score=21.49 Aligned_cols=31 Identities=26% Similarity=0.619 Sum_probs=20.9
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHH
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDD 152 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~ 152 (184)
.|.+|-...-..-.. ..+.|.-.||..|...
T Consensus 38 ~C~~C~~~~Ga~i~C-~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 38 KCSICKKKGGACIGC-SHPGCSRSFHVPCARK 68 (90)
T ss_pred CCcCCCCCCCeEEEE-eCCCCCcEEChHHHcc
Confidence 699999773332122 2346889999999754
No 339
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.24 E-value=66 Score=20.90 Aligned_cols=34 Identities=15% Similarity=0.418 Sum_probs=27.0
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcC
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD 156 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~ 156 (184)
.|.||-.....++.-...+ .-..|.+|+.+-..+
T Consensus 8 kC~VCg~~iieGqkFTF~~--kGsVH~eCl~~s~~~ 41 (103)
T COG4847 8 KCYVCGGTIIEGQKFTFTK--KGSVHYECLAESKRK 41 (103)
T ss_pred eEeeeCCEeeeccEEEEee--CCcchHHHHHHHHhc
Confidence 6999999999998866663 455899999876654
No 340
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=27.94 E-value=96 Score=15.89 Aligned_cols=19 Identities=16% Similarity=0.448 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045853 26 VISSVVCLILFLFYISYYL 44 (184)
Q Consensus 26 ~i~~~~~li~~~~~i~~~~ 44 (184)
+....++++...++++.|+
T Consensus 9 iAt~Lfi~iPt~FLiilYv 27 (33)
T TIGR03038 9 IATLLFILVPTVFLLILYI 27 (33)
T ss_pred HHHHHHHHHHHHHHHHHhe
Confidence 3334444444444444443
No 341
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=27.93 E-value=28 Score=32.64 Aligned_cols=38 Identities=24% Similarity=0.519 Sum_probs=29.3
Q ss_pred ccCCCCcccccCcccccC-CccceeecCCCccccHhhHH
Q 045853 114 DAVNKTSTCVICLEEFRD-GDECKVRSKCNHIFHQTCMD 151 (184)
Q Consensus 114 ~~~~~~~~C~ICl~~~~~-~~~~~~l~~C~H~FH~~Ci~ 151 (184)
...+++..|.||++-=.. .+.+...-.|+=..|.+|..
T Consensus 214 ~~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg 252 (1051)
T KOG0955|consen 214 ALLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG 252 (1051)
T ss_pred cccCCCccceeecccccCCCceEEEcCCCcchhhhhccC
Confidence 455777899999987554 34556666888899999988
No 342
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=27.88 E-value=35 Score=26.86 Aligned_cols=33 Identities=12% Similarity=0.245 Sum_probs=21.5
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHH
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDD 152 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~ 152 (184)
..-..|+.|-. .....-.++.|||.+|.+=-..
T Consensus 307 ~tS~~C~~cg~---~~~r~~~C~~cg~~~~rD~naa 339 (364)
T COG0675 307 YTSKTCPCCGH---LSGRLFKCPRCGFVHDRDVNAA 339 (364)
T ss_pred CCcccccccCC---ccceeEECCCCCCeehhhHHHH
Confidence 33357999988 2233345777999999875433
No 343
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=27.73 E-value=68 Score=27.43 Aligned_cols=12 Identities=17% Similarity=0.368 Sum_probs=8.7
Q ss_pred cHhhHHHHhcCC
Q 045853 146 HQTCMDDWLDDH 157 (184)
Q Consensus 146 H~~Ci~~Wl~~~ 157 (184)
+..++..||+.+
T Consensus 291 ~kGsL~dyL~~n 302 (534)
T KOG3653|consen 291 PKGSLCDYLKAN 302 (534)
T ss_pred cCCcHHHHHHhc
Confidence 467888888754
No 344
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=27.71 E-value=2e+02 Score=19.75 Aligned_cols=6 Identities=17% Similarity=0.180 Sum_probs=2.3
Q ss_pred CCccch
Q 045853 11 PNDEGL 16 (184)
Q Consensus 11 ~~~~~~ 16 (184)
+++.+.
T Consensus 12 ~~~~~~ 17 (124)
T PRK11486 12 PVSGSP 17 (124)
T ss_pred CCCcch
Confidence 333333
No 345
>PHA03240 envelope glycoprotein M; Provisional
Probab=27.43 E-value=79 Score=23.92 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045853 20 VLTTPLVISSVVCLILFLF 38 (184)
Q Consensus 20 ~~~~~~~i~~~~~li~~~~ 38 (184)
..++++++++++++|++.+
T Consensus 213 ~~WIiilIIiIiIIIL~cf 231 (258)
T PHA03240 213 IAWIFIAIIIIIVIILFFF 231 (258)
T ss_pred HhHHHHHHHHHHHHHHHHH
No 346
>PRK14094 psbM photosystem II reaction center protein M; Provisional
Probab=27.26 E-value=67 Score=17.90 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045853 25 LVISSVVCLILFLFYISYYL 44 (184)
Q Consensus 25 ~~i~~~~~li~~~~~i~~~~ 44 (184)
++...+++++...++++.|+
T Consensus 8 fiAtaLFi~iPT~FLlilYV 27 (50)
T PRK14094 8 FVASLLFVGVPTIFLIGLFI 27 (50)
T ss_pred HHHHHHHHHHHHHHhhheeE
Confidence 34444444444444444443
No 347
>KOG1140 consensus N-end rule pathway, recognition component UBR1 [Posttranslational modification, protein turnover, chaperones]
Probab=26.70 E-value=39 Score=33.35 Aligned_cols=16 Identities=25% Similarity=0.848 Sum_probs=14.6
Q ss_pred CCCccccHhhHHHHhc
Q 045853 140 KCNHIFHQTCMDDWLD 155 (184)
Q Consensus 140 ~C~H~FH~~Ci~~Wl~ 155 (184)
.|||..|.+|......
T Consensus 1150 ~c~h~mh~~c~~~~~~ 1165 (1738)
T KOG1140|consen 1150 SCGHHMHYGCFKRYVQ 1165 (1738)
T ss_pred ccCCcchHHHHHHHHH
Confidence 5999999999999886
No 348
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=26.35 E-value=46 Score=19.88 Aligned_cols=10 Identities=10% Similarity=0.511 Sum_probs=5.3
Q ss_pred eeecCCCccc
Q 045853 136 KVRSKCNHIF 145 (184)
Q Consensus 136 ~~l~~C~H~F 145 (184)
-+.+.|||.|
T Consensus 54 L~Cp~c~r~Y 63 (68)
T PF03966_consen 54 LICPECGREY 63 (68)
T ss_dssp EEETTTTEEE
T ss_pred EEcCCCCCEE
Confidence 3445566654
No 349
>TIGR02523 type_IV_pilV type IV pilus modification protein PilV. Pilus systems categorized as type IV pilins differ greatly from one another, with some showing greater similarty to type II or type III secretion systems than to each other. Members of this protein family represent the PilV protein of type IV pilus systems as found in Pseudomonas aeruginosa PAO1, Pseudomonas syringae DC3000, Neisseria meningitidis MC58, Xylella fastidiosa 9a5c, etc.
Probab=26.35 E-value=2.3e+02 Score=19.72 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=9.4
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 045853 15 GLRLLVLTTPLVISSVVCLIL 35 (184)
Q Consensus 15 ~~~~~~~~~~~~i~~~~~li~ 35 (184)
|+.+.-+++.++|+.+.++.+
T Consensus 3 GfTLIEvLVAl~Ilaigllg~ 23 (139)
T TIGR02523 3 GFSMIEVLVALLVLAIGVLGM 23 (139)
T ss_pred ceeHHHHHHHHHHHHHHHHHH
Confidence 344444445555544444433
No 350
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=26.06 E-value=1.7e+02 Score=18.26 Aligned_cols=24 Identities=13% Similarity=-0.017 Sum_probs=14.9
Q ss_pred CCCccchhHHHHHHHHHHHHHHHH
Q 045853 10 CPNDEGLRLLVLTTPLVISSVVCL 33 (184)
Q Consensus 10 ~~~~~~~~~~~~~~~~~i~~~~~l 33 (184)
+-.-.|+..|.+++.++..++.++
T Consensus 36 y~~i~GlPlWF~~SCi~~~il~~~ 59 (80)
T PF06196_consen 36 YKYIFGLPLWFFYSCIGGPILFII 59 (80)
T ss_pred cccccCCcHHHHHHHHHHHHHHHH
Confidence 334677888887776655544443
No 351
>PLN02195 cellulose synthase A
Probab=25.96 E-value=77 Score=29.54 Aligned_cols=50 Identities=18% Similarity=0.450 Sum_probs=34.5
Q ss_pred CcccccCcccccCC---ccceeecCCCccccHhhHHHHhc-CCCcccccccccc
Q 045853 119 TSTCVICLEEFRDG---DECKVRSKCNHIFHQTCMDDWLD-DHSTCPLCRGRVR 168 (184)
Q Consensus 119 ~~~C~ICl~~~~~~---~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~ 168 (184)
...|.||-++...+ +.-...-.|+--.|..|.+-=-+ .++.||.|++...
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 34799999987633 33333445777789999843222 6788999999886
No 352
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.68 E-value=2e+02 Score=23.65 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=14.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045853 14 EGLRLLVLTTPLVISSVVCLILFLFYISYYLFTQLY 49 (184)
Q Consensus 14 ~~~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~ 49 (184)
.....+.-++..+++.++++++++.++-+++-+..+
T Consensus 181 ~~~~~~~~~~~~~~l~~~~~~liia~~D~~~qr~~~ 216 (363)
T COG1377 181 AALSIFMELLGKLLLAVLLLLLIVAAFDYFYQRFQY 216 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443444444444433333
No 353
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=25.60 E-value=29 Score=27.38 Aligned_cols=30 Identities=23% Similarity=0.543 Sum_probs=21.9
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHH
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMD 151 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~ 151 (184)
.|.||.....+++. ...--|..-||.-|+.
T Consensus 316 lC~IC~~P~~E~E~-~FCD~CDRG~HT~CVG 345 (381)
T KOG1512|consen 316 LCRICLGPVIESEH-LFCDVCDRGPHTLCVG 345 (381)
T ss_pred hhhccCCcccchhe-eccccccCCCCccccc
Confidence 58899888777555 3344588889988874
No 354
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=25.55 E-value=1e+02 Score=15.53 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045853 27 ISSVVCLILFLFYISYYL 44 (184)
Q Consensus 27 i~~~~~li~~~~~i~~~~ 44 (184)
....++++...++++.|.
T Consensus 10 AtaLfi~iPt~FLiilyv 27 (31)
T PF05151_consen 10 ATALFILIPTAFLIILYV 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhheEe
Confidence 333333444444444443
No 355
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=25.38 E-value=7.3 Score=22.59 Aligned_cols=33 Identities=24% Similarity=0.576 Sum_probs=18.3
Q ss_pred cccc--CcccccCCccc----eeecCCCccccHhhHHHH
Q 045853 121 TCVI--CLEEFRDGDEC----KVRSKCNHIFHQTCMDDW 153 (184)
Q Consensus 121 ~C~I--Cl~~~~~~~~~----~~l~~C~H~FH~~Ci~~W 153 (184)
-|+- |-..+..++.. ...+.|++.|+..|-..|
T Consensus 20 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 20 WCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp --TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred CCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 5766 77666544322 344458999999988777
No 356
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=25.26 E-value=31 Score=29.45 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=9.9
Q ss_pred ccccCcccccCCc
Q 045853 121 TCVICLEEFRDGD 133 (184)
Q Consensus 121 ~C~ICl~~~~~~~ 133 (184)
-|+-||+++...+
T Consensus 28 yCp~CL~~~p~~e 40 (483)
T PF05502_consen 28 YCPNCLFEVPSSE 40 (483)
T ss_pred ECccccccCChhh
Confidence 5888888887654
No 357
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=25.22 E-value=23 Score=19.81 Aligned_cols=23 Identities=35% Similarity=0.767 Sum_probs=14.9
Q ss_pred ecCCCccccHhhHHHHhc----CCCccccccc
Q 045853 138 RSKCNHIFHQTCMDDWLD----DHSTCPLCRG 165 (184)
Q Consensus 138 l~~C~H~FH~~Ci~~Wl~----~~~~CP~CR~ 165 (184)
...|||.|-. |.. ....||.|..
T Consensus 8 C~~Cg~~fe~-----~~~~~~~~~~~CP~Cg~ 34 (52)
T TIGR02605 8 CTACGHRFEV-----LQKMSDDPLATCPECGG 34 (52)
T ss_pred eCCCCCEeEE-----EEecCCCCCCCCCCCCC
Confidence 3468887774 322 2346999987
No 358
>KOG4671 consensus Brain cell membrane protein 1 (BCMP1) [General function prediction only]
Probab=25.14 E-value=2.3e+02 Score=20.95 Aligned_cols=26 Identities=8% Similarity=0.142 Sum_probs=17.8
Q ss_pred CCCCCCCccchhHHHHHHHHHHHHHH
Q 045853 6 TPSTCPNDEGLRLLVLTTPLVISSVV 31 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~i~~~~ 31 (184)
++-.|.+..+..+.......++...+
T Consensus 67 d~~~C~s~~~~~~~~aaAAmL~~g~~ 92 (201)
T KOG4671|consen 67 DPGGCQSTLEVDGGRAAAAMLFIGAA 92 (201)
T ss_pred CCccCcChhhcchHHHHHHHHHHHHH
Confidence 66789888888877766655555533
No 359
>PRK12705 hypothetical protein; Provisional
Probab=25.07 E-value=1.1e+02 Score=26.34 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 045853 21 LTTPLVISSVVCLILFLFYISYYLFTQLYSS 51 (184)
Q Consensus 21 ~~~~~~i~~~~~li~~~~~i~~~~~~~~~~~ 51 (184)
+...++++++++++.+++++.++++.++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (508)
T PRK12705 1 FAMSILLVILLLLIGLLLGVLVVLLKKRQRL 31 (508)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 360
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=24.87 E-value=2.9e+02 Score=20.41 Aligned_cols=10 Identities=0% Similarity=-0.038 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 045853 35 LFLFYISYYL 44 (184)
Q Consensus 35 ~~~~~i~~~~ 44 (184)
++.+++....
T Consensus 15 ~~G~~~~~~~ 24 (201)
T PF12072_consen 15 GIGYLVRKKI 24 (201)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 361
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=24.82 E-value=21 Score=18.33 Aligned_cols=14 Identities=29% Similarity=0.667 Sum_probs=0.0
Q ss_pred cccccccccccccC
Q 045853 159 TCPLCRGRVRRIAW 172 (184)
Q Consensus 159 ~CP~CR~~i~~~~~ 172 (184)
.||.|..+|....+
T Consensus 6 ~C~nC~R~v~a~Rf 19 (33)
T PF08209_consen 6 ECPNCGRPVAASRF 19 (33)
T ss_dssp E-TTTSSEEEGGGH
T ss_pred ECCCCcCCcchhhh
No 362
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=24.78 E-value=24 Score=29.67 Aligned_cols=51 Identities=12% Similarity=0.079 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 045853 2 PFAATPSTCPNDEGLRLLVLTTPLVISSVVCLILFLFYISYYLFTQLYSSR 52 (184)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r 52 (184)
|-.+....-+........+++..++.+.++++++++++++..+.+++++.+
T Consensus 335 ~t~s~~~~~p~~~~~~~~~~l~vVlgvavlivVv~viv~vc~~~rrrR~~~ 385 (439)
T PF02480_consen 335 PTPSAAPAPPSPRTSRGAALLGVVLGVAVLIVVVGVIVWVCLRCRRRRRQR 385 (439)
T ss_dssp ---------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHhheeeeehhccccc
No 363
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=24.64 E-value=2.6e+02 Score=19.81 Aligned_cols=49 Identities=22% Similarity=0.203 Sum_probs=0.0
Q ss_pred CccchhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhhHHHHhhhHHH
Q 045853 12 NDEGLRLLVLTTPLVISSVVCLI--------------LFLFYISYYLFTQLYSSRIQTQNQDI 60 (184)
Q Consensus 12 ~~~~~~~~~~~~~~~i~~~~~li--------------~~~~~i~~~~~~~~~~~r~~~~~~~~ 60 (184)
+..+..+.+.++|++.+++..++ .++.....|.+.+++.++...+...+
T Consensus 73 slL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~r~ysRkl~~~~~~Q 135 (150)
T COG3086 73 SLLKSALLVYIFPLVGLFLGAILAQYLFFSELIVIFGAFLGLALGFLLARRYSRKLAKRTEWQ 135 (150)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
No 364
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=24.63 E-value=1.8e+02 Score=17.86 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Q 045853 18 LLVLTTPLVISSVVCLILFLFYISYYLFTQLYSSRIQTQN 57 (184)
Q Consensus 18 ~~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r~~~~~ 57 (184)
+...+=.+++..+.++++.++++.+....++..-..+++.
T Consensus 6 f~lYlqgL~ls~i~V~~~~~~wi~~Ra~~~~DKT~~eRQa 45 (72)
T PF13268_consen 6 FSLYLQGLLLSSILVLLVSGIWILWRALRKKDKTAKERQA 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH
No 365
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=24.59 E-value=1.7e+02 Score=19.39 Aligned_cols=28 Identities=11% Similarity=0.033 Sum_probs=0.0
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHH
Q 045853 12 NDEGLRLLVLTTPLVISSVVCLILFLFY 39 (184)
Q Consensus 12 ~~~~~~~~~~~~~~~i~~~~~li~~~~~ 39 (184)
+.+..+++++.+.+++++++.+.+.+++
T Consensus 63 DvS~~F~L~~~~ti~lv~~~~~~I~lL~ 90 (103)
T PF12955_consen 63 DVSVPFWLFAGFTIALVVLVAGAIGLLF 90 (103)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHH
No 366
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.59 E-value=66 Score=25.08 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=0.0
Q ss_pred ccCCCCcccccCcc-cccCCccceeecCCCccccHhhHHHHhc
Q 045853 114 DAVNKTSTCVICLE-EFRDGDECKVRSKCNHIFHQTCMDDWLD 155 (184)
Q Consensus 114 ~~~~~~~~C~ICl~-~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~ 155 (184)
........++++.. ++..+.+-.++..|||.|...|..-|..
T Consensus 90 S~~~~~~~ls~~~s~e~~~~~e~~~~y~~~~~f~i~~~~i~~~ 132 (271)
T COG5574 90 SRFNREETLSIEYSRETNIDKEGEVLYPCGIFFCIGCDYIWSI 132 (271)
T ss_pred cccccccccccccCcccccccccceeeecccccchhhhHHHHH
No 367
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=24.51 E-value=2.4e+02 Score=19.24 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHhhhhHHHHHHHHHhhcccccccccCcchhhhcccchHHHHHHhhh
Q 045853 27 ISSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLSSQQQQQQRVIINSTEYKVKEDPRASKFKKVSWTAFKRDIIN 106 (184)
Q Consensus 27 i~~~~~li~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (184)
++.+.++++++.+.++.++.+-..+..+.+..+.+...+.+........ .....++......++.+
T Consensus 39 vly~~~~va~L~vai~ii~~q~~~yqvq~ei~~Le~kIs~q~~e~~dlk--------------qeV~dLss~eRIldiAk 104 (120)
T COG4839 39 VLYTTLAVAALVVAISIISVQTKAYQVQGEITDLESKISEQKTENDDLK--------------QEVKDLSSPERILDIAK 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHH--------------HHHHHhccHHHHHHHHH
Q ss_pred hcCCCCcccC
Q 045853 107 NKSHQNDDAV 116 (184)
Q Consensus 107 ~~~~~~~~~~ 116 (184)
+..-...+..
T Consensus 105 k~gLkl~~~N 114 (120)
T COG4839 105 KAGLKLNNEN 114 (120)
T ss_pred HccccCCCcc
No 368
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=24.48 E-value=1.7e+02 Score=17.57 Aligned_cols=53 Identities=13% Similarity=0.082 Sum_probs=0.0
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHhhhhHHHHH
Q 045853 12 NDEGLRLLVLTTPLVISSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLSSQQQQ 70 (184)
Q Consensus 12 ~~~~~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 70 (184)
..++..+|. .+.+.++.++++++--..-.+...+...++.....+....+++.
T Consensus 13 GgyafyVWl------A~~~tll~l~~l~v~sv~qrr~iL~~v~r~~aReaR~~~aq~~~ 65 (67)
T COG3114 13 GGYAFYVWL------AVGMTLLPLAVLVVHSVLQRRAILRGVARQRAREARLRAAQQQE 65 (67)
T ss_pred cCchHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 369
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=24.37 E-value=32 Score=27.08 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHhhhh
Q 045853 2 PFAATPSTCPNDEGLRLLVLTTPLVISSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLS 65 (184)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 65 (184)
+-...+...+...+...|.++..++..++++.++.++.+....+.++.+.+...++-+....++
T Consensus 196 ~~~~~~~~~~~~~~~~~W~iv~g~~~G~~~L~ll~~lv~~~vr~krk~k~~eMEr~A~~gE~L~ 259 (278)
T PF06697_consen 196 PPAPPPPGAPPRKRSWWWKIVVGVVGGVVLLGLLSLLVAMLVRYKRKKKIEEMERRAEEGEALQ 259 (278)
T ss_pred CCCCCCcccccCCcceeEEEEEEehHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhccCceee
No 370
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=24.36 E-value=2.9e+02 Score=20.24 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHhhhhHHHHHHHH
Q 045853 28 SSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLSSQQQQQQR 73 (184)
Q Consensus 28 ~~~~~li~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 73 (184)
++.++.++++++++|+.+++-...+.++.........+...--++.
T Consensus 39 ll~~~g~vL~l~i~Y~~iWqPl~~~~~~a~~~l~~~~qll~wvq~~ 84 (178)
T PRK09731 39 MLLAAVVFLFSVGYYVLIWQPLSERIEQQETMLQQLVAMNTRLKSA 84 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 371
>PHA02610 uvsY.-2 hypothetical protein; Provisional
Probab=24.27 E-value=29 Score=19.79 Aligned_cols=11 Identities=18% Similarity=0.884 Sum_probs=0.0
Q ss_pred ccccccccccc
Q 045853 160 CPLCRGRVRRI 170 (184)
Q Consensus 160 CP~CR~~i~~~ 170 (184)
|+.||+++...
T Consensus 4 CvvCK~Pi~~a 14 (53)
T PHA02610 4 CVVCKQPIEKA 14 (53)
T ss_pred eeeeCCchhhc
No 372
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=24.20 E-value=2.8e+02 Score=20.05 Aligned_cols=66 Identities=12% Similarity=0.170 Sum_probs=0.0
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHhhhhHHHHHHHH
Q 045853 8 STCPNDEGLRLLVLTTPLVISSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLSSQQQQQQR 73 (184)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 73 (184)
++.+...++.+..-++..-++-++++++++...++-.+......|...-.................
T Consensus 12 ~~~~~~~~f~~n~~~~~~~~Inflill~lL~~fl~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~ 77 (184)
T CHL00019 12 GHWPSAGSFGFNTDILETNLINLSVVLGVLIYFGKGVLSDLLDNRKQTILNTIRNSEERREEAIEK 77 (184)
T ss_pred HhccccCccCCcchHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 373
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=24.17 E-value=2.1e+02 Score=25.03 Aligned_cols=43 Identities=12% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHh
Q 045853 20 VLTTPLVISSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQ 62 (184)
Q Consensus 20 ~~~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r~~~~~~~~~~ 62 (184)
+++.++++++++++++++..+.+-....+.......+-..+..
T Consensus 1 ~~~~~ii~i~ii~i~~~~~~~~~rr~~~~~i~~Le~~k~~l~~ 43 (569)
T PRK04778 1 GMIYLIIAIVVIIIIAYLAGLILRKRNYKRIDELEERKQELEN 43 (569)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 374
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=24.12 E-value=2.1e+02 Score=18.64 Aligned_cols=51 Identities=8% Similarity=0.036 Sum_probs=0.0
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Q 045853 7 PSTCPNDEGLRLLVLTTPLVISSVVCLILFLFYISYYLFTQLYSSRIQTQN 57 (184)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r~~~~~ 57 (184)
+|+=+-+..+.++..-.|++++++...++-.++..+.-..+..+.|++...
T Consensus 43 ~Nt~~V~~~~lfg~~~~PLilvil~s~v~G~Li~~~~~~~Ri~~lrr~~kr 93 (98)
T COG5416 43 INTDSVEFNYLFGQWELPLILVILGAAVVGALIAMFAGIARILQLRREVKR 93 (98)
T ss_pred hccCceEEEeecchhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
No 375
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.91 E-value=54 Score=19.62 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=0.0
Q ss_pred CCcccccccccccccCCCCCC
Q 045853 157 HSTCPLCRGRVRRIAWPSFTT 177 (184)
Q Consensus 157 ~~~CP~CR~~i~~~~~~~~~~ 177 (184)
...||.|-+++.-..-..|++
T Consensus 7 ~v~CP~Cgkpv~w~~~s~frP 27 (65)
T COG3024 7 TVPCPTCGKPVVWGEESPFRP 27 (65)
T ss_pred cccCCCCCCcccccccCCcCc
No 376
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=23.91 E-value=49 Score=26.93 Aligned_cols=43 Identities=16% Similarity=0.468 Sum_probs=0.0
Q ss_pred cCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhc---------------------CCCcccccc
Q 045853 115 AVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD---------------------DHSTCPLCR 164 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~---------------------~~~~CP~CR 164 (184)
....+.-|++|-+.... ..=|-.-|+.|=.-+-+ ...+||.||
T Consensus 11 dedl~ElCPVCGDkVSG-------YHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CR 74 (475)
T KOG4218|consen 11 DEDLGELCPVCGDKVSG-------YHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCR 74 (475)
T ss_pred ccccccccccccCcccc-------ceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchh
No 377
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=23.82 E-value=2.7e+02 Score=19.66 Aligned_cols=60 Identities=17% Similarity=0.193 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHhhhHHHHhhhhHHHHHHHHH
Q 045853 15 GLRLLVLTTPLVISSVVCLILFLFYIS-YYLFTQLYSSRIQTQNQDIEQGLSSQQQQQQRV 74 (184)
Q Consensus 15 ~~~~~~~~~~~~i~~~~~li~~~~~i~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 74 (184)
++.++++++-++-++++++++..++.- +.-+...+..++.....+.+.............
T Consensus 5 ~~~~~~~~~~~inflil~~lL~~fl~kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~ 65 (164)
T PRK14473 5 GINLGLLIAQLINFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDY 65 (164)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 378
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=23.79 E-value=2.4e+02 Score=19.16 Aligned_cols=60 Identities=10% Similarity=0.135 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHhhhhHHHHHHHHH
Q 045853 15 GLRLLVLTTPLVISSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLSSQQQQQQRV 74 (184)
Q Consensus 15 ~~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 74 (184)
.+.+.+++..+-++++++++-.+++--+.-+...+..++.....+.+.............
T Consensus 3 ~~~~t~~~~~i~flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~ 62 (140)
T PRK07353 3 DFDATLPLMAVQFVLLTFILNALFYKPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQY 62 (140)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 379
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=23.72 E-value=1.6e+02 Score=22.44 Aligned_cols=29 Identities=7% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045853 18 LLVLTTPLVISSVVCLILFLFYISYYLFT 46 (184)
Q Consensus 18 ~~~~~~~~~i~~~~~li~~~~~i~~~~~~ 46 (184)
+++.+..+.+++++++++++-++++.+.+
T Consensus 140 ~YlS~~~lgll~~~~~laivRlilf~i~w 168 (224)
T PF03839_consen 140 YYLSVGALGLLGLFFALAIVRLILFLITW 168 (224)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 380
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.68 E-value=1.3e+02 Score=23.38 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 045853 26 VISSVVCLILFLFYISYYLFTQLY 49 (184)
Q Consensus 26 ~i~~~~~li~~~~~i~~~~~~~~~ 49 (184)
++..++..++++.++.++++++.+
T Consensus 4 ~v~vlVaa~llV~~i~l~l~~r~r 27 (299)
T KOG3054|consen 4 IVAVLVAAALLVAVILLFLWKRRR 27 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
No 381
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=23.61 E-value=16 Score=24.56 Aligned_cols=27 Identities=11% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 045853 27 ISSVVCLILFLFYISYYLFTQLYSSRI 53 (184)
Q Consensus 27 i~~~~~li~~~~~i~~~~~~~~~~~r~ 53 (184)
|.++++++.+++++.-|.+.++..+|.
T Consensus 29 IGiL~VILgiLLliGCWYckRRSGYk~ 55 (118)
T PF14991_consen 29 IGILIVILGILLLIGCWYCKRRSGYKT 55 (118)
T ss_dssp SS-------------------------
T ss_pred ceeHHHHHHHHHHHhheeeeecchhhh
No 382
>PHA03030 hypothetical protein; Provisional
Probab=23.45 E-value=54 Score=21.56 Aligned_cols=24 Identities=13% Similarity=0.455 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Q 045853 28 SSVVCLILFLFYISYYLFTQLYSS 51 (184)
Q Consensus 28 ~~~~~li~~~~~i~~~~~~~~~~~ 51 (184)
++.++.++|+++++||.++-..|.
T Consensus 4 i~~ili~lfifl~iffYI~~IkRD 27 (122)
T PHA03030 4 IFLILIFLFIFLFIFFYIRIIKRD 27 (122)
T ss_pred ehHHHHHHHHHHHHHHHheeeecc
No 383
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=23.41 E-value=84 Score=22.37 Aligned_cols=41 Identities=17% Similarity=0.350 Sum_probs=0.0
Q ss_pred cccCCccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 128 EFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 128 ~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
++..+..-.++|.|+..|- .+.-+.....||.|-..+...+
T Consensus 102 ~~e~~~~~Y~Cp~c~~r~t---f~eA~~~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 102 EFETNNMFFICPNMCVRFT---FNEAMELNFTCPRCGAMLDYLD 142 (158)
T ss_pred hhccCCCeEECCCCCcEee---HHHHHHcCCcCCCCCCEeeecc
No 384
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=23.31 E-value=1.9e+02 Score=17.76 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=0.0
Q ss_pred CCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHH
Q 045853 4 AATPSTCPNDEGLRLLVLTTPLVISSVVCLILFL 37 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~ 37 (184)
+..|+. |...+-.+.+.+..++.+++.++++++
T Consensus 47 A~~P~~-P~~P~~~lil~l~~~~Gl~lgi~~~~~ 79 (82)
T PF13807_consen 47 AIVPDK-PVSPKRALILALGLFLGLILGIGLAFL 79 (82)
T ss_pred cccCCC-CCCCcHHHHHHHHHHHHHHHHHHHHHH
No 385
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=23.24 E-value=91 Score=22.73 Aligned_cols=41 Identities=17% Similarity=0.359 Sum_probs=0.0
Q ss_pred cccCCccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 128 EFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 128 ~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
++..+..-.++|.|+..|= ...-+.....||.|-..+...+
T Consensus 110 ~~e~~~~~Y~Cp~C~~ryt---f~eA~~~~F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 110 EEEENNMFFFCPNCHIRFT---FDEAMEYGFRCPQCGEMLEEYD 150 (178)
T ss_pred hhccCCCEEECCCCCcEEe---HHHHhhcCCcCCCCCCCCeecc
No 386
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=23.16 E-value=2.1e+02 Score=23.53 Aligned_cols=65 Identities=12% Similarity=0.145 Sum_probs=0.0
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHhhhhHHHHHHH
Q 045853 8 STCPNDEGLRLLVLTTPLVISSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLSSQQQQQQ 72 (184)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 72 (184)
..++......+..-++..++..++++++++.++-+.+.++.+.++..-..++..+...+.+.+.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEVKdE~Ke~EGdP~ 239 (359)
T PRK05702 175 AAEPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPE 239 (359)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHH
No 387
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=23.06 E-value=2.1e+02 Score=18.05 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045853 14 EGLRLLVLTTPLVISSVVCLILFLFYISYYL 44 (184)
Q Consensus 14 ~~~~~~~~~~~~~i~~~~~li~~~~~i~~~~ 44 (184)
+|+.+.++-..++++++.+|+..+-++...+
T Consensus 9 ~gl~lMvlGMg~VfvFL~lLI~~i~~ms~l~ 39 (82)
T PRK02919 9 EGFTLMFLGMGFVLAFLFLLIFAIRGMSALI 39 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 388
>PF11084 DUF2621: Protein of unknown function (DUF2621); InterPro: IPR020203 This entry represents a group of uncharacterised proteins.
Probab=22.99 E-value=2.7e+02 Score=19.33 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 045853 22 TTPLVISSVVCLILFLFYISYYLFTQLYSSR 52 (184)
Q Consensus 22 ~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r 52 (184)
+...++++.+++++.++.|.-|+--|+...|
T Consensus 5 wFm~fI~~W~~vli~l~~IGGfFMFRKFLK~ 35 (141)
T PF11084_consen 5 WFMWFILFWVVVLIGLMAIGGFFMFRKFLKR 35 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
No 389
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=22.95 E-value=55 Score=29.86 Aligned_cols=37 Identities=14% Similarity=0.321 Sum_probs=0.0
Q ss_pred cccCCCCcccccCcccccCCcc---cee--ecCCCccccHhh
Q 045853 113 DDAVNKTSTCVICLEEFRDGDE---CKV--RSKCNHIFHQTC 149 (184)
Q Consensus 113 ~~~~~~~~~C~ICl~~~~~~~~---~~~--l~~C~H~FH~~C 149 (184)
....+....|..|-..|....+ .|. +..||++||..|
T Consensus 454 qpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~C 495 (1374)
T PTZ00303 454 QKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFC 495 (1374)
T ss_pred CCCcccCCcccCcCCcccccccccccccccccCCccccCccc
No 390
>PRK12705 hypothetical protein; Provisional
Probab=22.82 E-value=4.9e+02 Score=22.61 Aligned_cols=56 Identities=11% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------------HHHHhhhHHHHhhhhHHHHHHH
Q 045853 18 LLVLTTPLVISSVVCLILFLFYISYYLFTQLYS-------------------------SRIQTQNQDIEQGLSSQQQQQQ 72 (184)
Q Consensus 18 ~~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~~-------------------------~r~~~~~~~~~~~~~~~~~~~~ 72 (184)
+.+.++.+++++++.+++.++++.++...+... ..........++.........+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~ 80 (508)
T PRK12705 1 FAMSILLVILLLLIGLLLGVLVVLLKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQ 80 (508)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 045853 73 R 73 (184)
Q Consensus 73 ~ 73 (184)
.
T Consensus 81 ~ 81 (508)
T PRK12705 81 R 81 (508)
T ss_pred H
No 391
>PHA03290 envelope glycoprotein I; Provisional
Probab=22.71 E-value=21 Score=28.73 Aligned_cols=66 Identities=9% Similarity=0.104 Sum_probs=0.0
Q ss_pred CCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHhhhHHHHhhhhHHH
Q 045853 3 FAATPSTCPNDEGLRLLVLTTPLVISSVVCLILFLFYISYYLFTQ-LYSSRIQTQNQDIEQGLSSQQ 68 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~~-~~~~r~~~~~~~~~~~~~~~~ 68 (184)
|...-++.+....-..+++.+++...++++|++++..+.-...++ ...+|+-+.++..+++..+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~ivipi~~~llilla~i~~i~~~~~Rr~s~~~r~iyrp~~~~~~~~~~~~ 323 (357)
T PHA03290 257 DMHELPEKLLEDPADNFLIAIPITASLLIILAIIIVITIGIKRRRSIEKHKIYRPKRKKEQAITEKN 323 (357)
T ss_pred cccccccccccCCcceEEEEehHHHHHHHHHHHHHHHHhhhhhhhhcccCceecCCCcchhchhhcc
No 392
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=22.53 E-value=4.4e+02 Score=21.64 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHhhhhHHHHHHH
Q 045853 25 LVISSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLSSQQQQQQ 72 (184)
Q Consensus 25 ~~i~~~~~li~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 72 (184)
..+.++.+++++.+.+.+|.+.+......+.+....+.......++..
T Consensus 30 ~~l~~lalll~~alg~~~~~~~~~q~~~~~~~~~~L~~ql~~~~~~~~ 77 (372)
T PF04375_consen 30 SGLALLALLLALALGAGGWYWQQQQLQQLQQQLQALQQQLQQLQQQLE 77 (372)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 393
>KOG4550 consensus Predicted membrane protein [Function unknown]
Probab=22.48 E-value=1.6e+02 Score=25.02 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHH
Q 045853 19 LVLTTPLVISSVVCLILFLFYISYYLFTQLYSSRIQTQNQD 59 (184)
Q Consensus 19 ~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r~~~~~~~ 59 (184)
.++++.++++++-+.+++++.++.+.-.+-.++.++++...
T Consensus 560 lIl~s~~al~gvC~~il~ii~~Lh~~EKkeD~~Er~QesHR 600 (606)
T KOG4550|consen 560 LILLSAIALIGVCVFILAIIGILHWQEKKEDDRERRQESHR 600 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheehhhhhhhhHHHHhhhhc
No 394
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=22.46 E-value=2.2e+02 Score=18.09 Aligned_cols=50 Identities=14% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHhhhhHHHHHHHHHhhc
Q 045853 28 SSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLSSQQQQQQRVIIN 77 (184)
Q Consensus 28 ~~~~~li~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (184)
+.+++++++++.....++.+...+....+..+.+......+.........
T Consensus 15 l~i~l~~~v~~~a~~~v~~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE 64 (97)
T PF04999_consen 15 LIILLVIVVLISALGVVYSRHQSRQLFYELQQLEKEIDQLQEENERLRLE 64 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 395
>PF03554 Herpes_UL73: UL73 viral envelope glycoprotein ; InterPro: IPR005211 This entry represents a conserved region found in a number of viral proteins: BLRF1, U46, 53, and UL73, collectively known as glycoprotein N. These UL73-like envelope glycoproteins, which associate in a high molecular mass complex with their counterpart protein gM, induce neutralizing antibody responses in the host. These glycoproteins are highly polymorphic, particularly in the N-terminal region [].; GO: 0019031 viral envelope
Probab=22.43 E-value=2.1e+02 Score=18.03 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045853 20 VLTTPLVISSVVCLILFLFYISYYLFTQ 47 (184)
Q Consensus 20 ~~~~~~~i~~~~~li~~~~~i~~~~~~~ 47 (184)
+..+-.++-.+++++.+++++.+++|.+
T Consensus 48 FsSIW~iiN~~il~~A~~vyLry~Cf~~ 75 (82)
T PF03554_consen 48 FSSIWAIINVVILLCAFCVYLRYLCFQK 75 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 396
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=22.40 E-value=1.6e+02 Score=23.47 Aligned_cols=34 Identities=6% Similarity=-0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 045853 19 LVLTTPLVISSVVCLILFLFYISYYLFTQLYSSR 52 (184)
Q Consensus 19 ~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r 52 (184)
|+-++.+++++.+++.+++++..++++.....+.
T Consensus 44 W~~IllfYivFY~~la~lf~~~~~~~~~tidp~~ 77 (300)
T KOG3927|consen 44 WAKILLFYIVFYGVLAALFAGCMWFMLQTIDPKV 77 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
No 397
>COG1704 LemA Uncharacterized conserved protein [Function unknown]
Probab=22.30 E-value=3.3e+02 Score=20.12 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHhhhhHHHHHHHHHhhcccccccccCcchhhhcccchHHHH
Q 045853 22 TTPLVISSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLSSQQQQQQRVIINSTEYKVKEDPRASKFKKVSWTAFK 101 (184)
Q Consensus 22 ~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (184)
+..+++++.+++++.++++..+=-..+.+.+...--.+++...+..-.-.++....-..|...+....++..........
T Consensus 1 ~~~~~i~l~vi~il~ll~~~~yN~lv~~~~~v~~awSqI~vqlqrR~DLiPNLVetVKgYa~hEketLe~Vt~aRs~a~~ 80 (185)
T COG1704 1 LRRFLIILAVIVILLLLAVGGYNGLVKLREAVKEAWSQIDVQLQRRADLIPNLVETVKGYASHEKETLEEVTEARSRAMS 80 (185)
T ss_pred ChhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 398
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=22.17 E-value=57 Score=16.66 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=0.0
Q ss_pred ccccCcccccCCccceeecCCCc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNH 143 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H 143 (184)
.|.+|-..+..++.--..|-|||
T Consensus 4 ~C~~CG~i~~g~~~p~~CP~Cg~ 26 (34)
T cd00729 4 VCPVCGYIHEGEEAPEKCPICGA 26 (34)
T ss_pred ECCCCCCEeECCcCCCcCcCCCC
No 399
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=22.12 E-value=2.4e+02 Score=23.00 Aligned_cols=64 Identities=11% Similarity=0.184 Sum_probs=0.0
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHhhhhHHHHHHH
Q 045853 9 TCPNDEGLRLLVLTTPLVISSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLSSQQQQQQ 72 (184)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 72 (184)
.++......+..-++..++..++++++++..+-+.+.++.+.++..-..++..+...+++.+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~ 231 (342)
T TIGR01404 168 YCGLDGLAPIVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPE 231 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHH
No 400
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=22.11 E-value=2.2e+02 Score=21.11 Aligned_cols=30 Identities=30% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045853 21 LTTPLVISSVVCLILFLFYISYYLFTQLYS 50 (184)
Q Consensus 21 ~~~~~~i~~~~~li~~~~~i~~~~~~~~~~ 50 (184)
+++|+++++++++.++.|...|........
T Consensus 6 ~~~P~~Y~~vl~~sl~~Fs~~YRkr~~~~~ 35 (190)
T PF09802_consen 6 LYTPLAYVAVLVGSLATFSSIYRKRKAAKS 35 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 401
>PF11807 DUF3328: Domain of unknown function (DUF3328); InterPro: IPR021765 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes.
Probab=22.03 E-value=2.1e+02 Score=20.60 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=0.0
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045853 11 PNDEGLRLLVLTTPLVISSVVCLILFLFYISYY 43 (184)
Q Consensus 11 ~~~~~~~~~~~~~~~~i~~~~~li~~~~~i~~~ 43 (184)
|...+..+...++.++++++++++++++.....
T Consensus 3 p~~r~~~w~~~~~~~~~~l~~~l~~~~~~~~~~ 35 (217)
T PF11807_consen 3 PRRRRRRWRRLLLLFLLLLILSLLLLVLAVLLR 35 (217)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
No 402
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.97 E-value=3.4e+02 Score=20.23 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHhhhhHHHHHHHHHhh
Q 045853 27 ISSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLSSQQQQQQRVII 76 (184)
Q Consensus 27 i~~~~~li~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 76 (184)
+++.+++++++....|++.+......+.......+...+.-++...++.+
T Consensus 25 lv~~lL~~~~V~~lGy~f~~s~k~eel~~~~~eEe~LKs~~q~K~~~aan 74 (211)
T COG3167 25 LVFCLLAVAAVLGLGYAFYLSGKLEELEELEAEEEELKSTYQQKAIQAAN 74 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 403
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=21.97 E-value=3.3e+02 Score=19.95 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHhhhhHHHHHHHHHhhccccccccc
Q 045853 16 LRLLVLTTPLVISSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLSSQQQQQQRVIINSTEYKVKE 85 (184)
Q Consensus 16 ~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
..+.+.++.++......++.+++.+..++..-....+..++......+.+..+....+-..+........
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~k~~~~~gls~~e~~~~~~~l~ea~~~i~~ 86 (199)
T PF10112_consen 17 IAAITFLVSFFGFDHSFLLSLLIGAVAFAVVYLFGKRRQRRKFLKEAGLSDREYEYIREILEEAKEKIRR 86 (199)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccccchhHhhhcCCChhHHHHHHHHHHHHHHHHHH
No 404
>PHA00027 lys lysis protein
Probab=21.96 E-value=1.7e+02 Score=16.70 Aligned_cols=46 Identities=20% Similarity=0.163 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045853 1 MPFAATPSTCPNDEGLRLLVLTTPLVISSVVCLILFLFYISYYLFT 46 (184)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~ 46 (184)
+||.-.-+.|-+..+.+-..+++++.|++.-..-.++..+.-..+.
T Consensus 3 ~~~kHee~~C~~q~RS~~LYVlI~LAIfLS~FTn~~l~sil~~lI~ 48 (58)
T PHA00027 3 LKAKHEDNLCRDQERSKRLYVLIALAIFLSDFTNIFLHSILEALIL 48 (58)
T ss_pred CCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 405
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=21.94 E-value=3.5e+02 Score=20.27 Aligned_cols=49 Identities=12% Similarity=0.162 Sum_probs=0.0
Q ss_pred CCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 045853 4 AATPSTCPNDEGLRLLVLTTPLVISSVVCLILFLFYISYYLFTQLYSSR 52 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r 52 (184)
.+.++---+.....-.+.-+......+.+++++++++++..+..++++|
T Consensus 3 ~~~~~~ldp~gp~a~~i~~L~~~~~~i~~iI~lvv~~lli~~~~kyr~r 51 (217)
T TIGR01432 3 CSNIEVLNPKGPVASSQSDLILYSIVFMLVIVFVVFVLFTIFLVKYRYR 51 (217)
T ss_pred CCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 406
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=21.80 E-value=29 Score=24.56 Aligned_cols=48 Identities=13% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHhhhhHHHHH
Q 045853 23 TPLVISSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLSSQQQQ 70 (184)
Q Consensus 23 ~~~~i~~~~~li~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 70 (184)
...+.+++.+|++++++-+.++|.++.+...+-....-.+..+.+..+
T Consensus 9 sv~i~igi~Ll~lLl~cgiGcvwhwkhr~~~~ftLPkflqRRssk~kD 56 (158)
T PF11770_consen 9 SVAISIGISLLLLLLLCGIGCVWHWKHRDSTRFTLPKFLQRRSSKRKD 56 (158)
T ss_pred hHHHHHHHHHHHHHHHHhcceEEEeeccCccccchHHHHHhhhhhccc
No 407
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=21.62 E-value=3.2e+02 Score=19.74 Aligned_cols=57 Identities=11% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHhhhhHHHHHHHHHhhcccccc
Q 045853 26 VISSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLSSQQQQQQRVIINSTEYK 82 (184)
Q Consensus 26 ~i~~~~~li~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
.++-++.++++++++.+|.+......-...+...+...................+++
T Consensus 29 ~~~~~inflil~~iL~~f~~~~~v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e 85 (184)
T PRK13455 29 DFVVTLAFLLFIGILVYFKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLASYE 85 (184)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 408
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=21.52 E-value=31 Score=24.75 Aligned_cols=44 Identities=20% Similarity=0.064 Sum_probs=0.0
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 045853 8 STCPNDEGLRLLVLTTPLVISSVVCLILFLFYISYYLFTQLYSS 51 (184)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~~~ 51 (184)
++-...++..+....+.-+++.+++.+.|+..+++++.++-.-|
T Consensus 116 ~t~tt~ek~GL~T~tLVGIIVGVLlaIG~igGIIivvvRKmSGR 159 (162)
T PF05808_consen 116 ETQTTVEKDGLSTVTLVGIIVGVLLAIGFIGGIIIVVVRKMSGR 159 (162)
T ss_dssp --------------------------------------------
T ss_pred ccccccccCCcceeeeeeehhhHHHHHHHHhheeeEEeehhccc
No 409
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=21.47 E-value=49 Score=24.53 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=0.0
Q ss_pred HhhHHHHhc-CCCcccccccccccccCC
Q 045853 147 QTCMDDWLD-DHSTCPLCRGRVRRIAWP 173 (184)
Q Consensus 147 ~~Ci~~Wl~-~~~~CP~CR~~i~~~~~~ 173 (184)
..||.+=-. -.+-||+||-...--++.
T Consensus 97 ktCIrkn~~~~gnpCPICRDeyL~~DyR 124 (239)
T KOG4021|consen 97 KTCIRKNGRFLGNPCPICRDEYLYFDYR 124 (239)
T ss_pred hHHHhhcCeecCCCCCccccceEEEecc
No 410
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=21.33 E-value=1.2e+02 Score=17.40 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 045853 27 ISSVVCLILFLFYISYYLFTQLYSSRIQT 55 (184)
Q Consensus 27 i~~~~~li~~~~~i~~~~~~~~~~~r~~~ 55 (184)
++.++++++++.++..+++.+...+..++
T Consensus 1 L~~~~~~~~~~~~~~~~~~~~~i~~pl~~ 29 (70)
T PF00672_consen 1 LLVLFLIILLLSLLLAWLLARRITRPLRR 29 (70)
T ss_dssp -HHHHHHHHHHHHHHHHH--HTTCCCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 411
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=21.24 E-value=22 Score=16.81 Aligned_cols=13 Identities=23% Similarity=0.731 Sum_probs=0.0
Q ss_pred ccccccccccccC
Q 045853 160 CPLCRGRVRRIAW 172 (184)
Q Consensus 160 CP~CR~~i~~~~~ 172 (184)
||.|.+...+..+
T Consensus 5 C~~CgR~F~~~~l 17 (25)
T PF13913_consen 5 CPICGRKFNPDRL 17 (25)
T ss_pred CCCCCCEECHHHH
No 412
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=21.22 E-value=1.5e+02 Score=18.36 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045853 27 ISSVVCLILFLFYISYYLFT 46 (184)
Q Consensus 27 i~~~~~li~~~~~i~~~~~~ 46 (184)
+.+++++.+|+.+.+..+++
T Consensus 31 faFV~~L~~fL~~liVRCfr 50 (81)
T PF11057_consen 31 FAFVGLLCLFLGLLIVRCFR 50 (81)
T ss_pred ehHHHHHHHHHHHHHHHHHH
No 413
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.20 E-value=62 Score=28.07 Aligned_cols=27 Identities=33% Similarity=0.631 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045853 18 LLVLTTPLVISSVVCLILFLFYISYYL 44 (184)
Q Consensus 18 ~~~~~~~~~i~~~~~li~~~~~i~~~~ 44 (184)
+|+++.+++++++++++++++...+|+
T Consensus 10 l~~~~~ivvv~i~~ilv~if~~~~~y~ 36 (548)
T COG2268 10 LLMLIAIVVVVILVILVLIFFGKRFYI 36 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhheeEE
No 414
>TIGR03068 srtB_sig_NPQTN sortase B signal domain, NPQTN class. This model represents one of the boutique (rare) sortase signals, recognized by sortase B (SrtB) rather than by the housekeeping-type SrtA class sortase. This sequence, beginning NPQTN, shows little similarity to several other SrtB substrates.
Probab=21.18 E-value=1.4e+02 Score=15.27 Aligned_cols=26 Identities=12% Similarity=0.305 Sum_probs=0.0
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHH
Q 045853 12 NDEGLRLLVLTTPLVISSVVCLILFL 37 (184)
Q Consensus 12 ~~~~~~~~~~~~~~~i~~~~~li~~~ 37 (184)
++.|...++.+++++.++++.-+.++
T Consensus 4 Ts~gtp~y~y~Ip~v~lflL~~~~i~ 29 (33)
T TIGR03068 4 TNAGTPAYIYAIPVASLALLIAITLF 29 (33)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHH
No 415
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.18 E-value=51 Score=22.61 Aligned_cols=23 Identities=26% Similarity=0.770 Sum_probs=0.0
Q ss_pred ccHhhHHHHhcCCCcccccccccccc
Q 045853 145 FHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 145 FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
||..|-..-.-+ ||.|..+|..+
T Consensus 30 fcskcgeati~q---cp~csasirgd 52 (160)
T COG4306 30 FCSKCGEATITQ---CPICSASIRGD 52 (160)
T ss_pred HHhhhchHHHhc---CCccCCccccc
No 416
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.92 E-value=1.6e+02 Score=20.86 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 045853 22 TTPLVISSVVCLILFLFYISYYLFTQLYSSR 52 (184)
Q Consensus 22 ~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r 52 (184)
++-.+++++++++++++++.++.-+..-+.|
T Consensus 17 ~~~~~~i~~ll~~l~~~~~~Y~r~r~~tKyR 47 (149)
T PF11694_consen 17 YLRYILIIILLLVLIFFFIKYLRNRLDTKYR 47 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
No 417
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=20.90 E-value=1.3e+02 Score=19.85 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 045853 15 GLRLLVLTTPLVISSVVCLILF 36 (184)
Q Consensus 15 ~~~~~~~~~~~~i~~~~~li~~ 36 (184)
|+-+.-+++.++++++++++++
T Consensus 13 gFTLvEMLiVLlIISiLlLl~i 34 (107)
T COG4537 13 GFTLVEMLIVLLIISILLLLFI 34 (107)
T ss_pred cccHHHHHHHHHHHHHHHHHHc
No 418
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=20.84 E-value=98 Score=16.36 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=0.0
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHH
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDD 152 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~ 152 (184)
.....|.+|.+.+.....-.....|+=..|..|...
T Consensus 9 ~~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~ 44 (49)
T smart00109 9 KKPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEK 44 (49)
T ss_pred CCCCCccccccccCcCCCCcCCCCCCchHHHHHHhh
No 419
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=20.83 E-value=1.6e+02 Score=15.99 Aligned_cols=42 Identities=7% Similarity=0.021 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 045853 15 GLRLLVLTTPLVISSVVCLILFLFYISYYLFTQLYSSRIQTQ 56 (184)
Q Consensus 15 ~~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r~~~~ 56 (184)
|+.+++-.+..+.+++++..++....-.-...+...+...++
T Consensus 3 gy~~yVW~sYg~t~l~l~~li~~~~~~~r~~~~~l~~~~~r~ 44 (45)
T TIGR03141 3 GYAFYVWLAYGITALVLAGLILWSLLDRRRLLRELRRLEARE 44 (45)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
No 420
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=20.69 E-value=33 Score=26.89 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 045853 24 PLVISSVVCLILFLFYISYYLFTQLYSSRIQT 55 (184)
Q Consensus 24 ~~~i~~~~~li~~~~~i~~~~~~~~~~~r~~~ 55 (184)
+++.+++..+|++++.+.-..|++++++..+.
T Consensus 226 ~vf~lLVPSiILVLLaVGGLLfYr~rrRs~~e 257 (285)
T PF05337_consen 226 FVFYLLVPSIILVLLAVGGLLFYRRRRRSHRE 257 (285)
T ss_dssp --------------------------------
T ss_pred ccccccccchhhhhhhccceeeeccccccccc
No 421
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=20.63 E-value=64 Score=18.87 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=0.0
Q ss_pred cccCcccccCCccceeecCCCcccc
Q 045853 122 CVICLEEFRDGDECKVRSKCNHIFH 146 (184)
Q Consensus 122 C~ICl~~~~~~~~~~~l~~C~H~FH 146 (184)
|..|... +..+-+.+.|||+++
T Consensus 1 C~~C~~~---~~~lw~CL~Cg~~~C 22 (63)
T PF02148_consen 1 CSVCGST---NSNLWLCLTCGYVGC 22 (63)
T ss_dssp -SSSHTC---SSSEEEETTTS-EEE
T ss_pred CCCCCCc---CCceEEeCCCCcccc
No 422
>PF15339 Afaf: Acrosome formation-associated factor
Probab=20.56 E-value=2.3e+02 Score=20.71 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 045853 19 LVLTTPLVISSVVCLILFLFYISYYLFTQLYSSRIQTQ 56 (184)
Q Consensus 19 ~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r~~~~ 56 (184)
+++-|.++-+++++.++++.+..+|.+.....++-+.+
T Consensus 132 LmLGIsLmTl~lfv~Ll~~c~atlyklk~l~~k~~esq 169 (200)
T PF15339_consen 132 LMLGISLMTLFLFVILLAFCSATLYKLKHLSYKSCESQ 169 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
No 423
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=20.51 E-value=64 Score=18.23 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=0.0
Q ss_pred cccCccccc--CCccceeecCCCc
Q 045853 122 CVICLEEFR--DGDECKVRSKCNH 143 (184)
Q Consensus 122 C~ICl~~~~--~~~~~~~l~~C~H 143 (184)
|+.|-.+++ ........|.|||
T Consensus 9 C~~Cg~~~~~~~~~~~irCp~Cg~ 32 (49)
T COG1996 9 CARCGREVELDQETRGIRCPYCGS 32 (49)
T ss_pred hhhcCCeeehhhccCceeCCCCCc
No 424
>COG3322 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=20.51 E-value=4.5e+02 Score=21.00 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHhhhhHHHHHHHHH
Q 045853 17 RLLVLTTPLVISSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLSSQQQQQQRV 74 (184)
Q Consensus 17 ~~~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 74 (184)
++.+++..++.+++.+++.+.-.+...-+.+.-.....++....+.....++......
T Consensus 11 kvl~~~~~i~aal~~~~~~~~~~il~s~f~~~d~~~~~~~~~~Ve~~l~~e~~~i~~~ 68 (295)
T COG3322 11 KVLIILLAIFAALTAALGGASYNILLSSFLRLDEQALLENVELVENALDSEQKSIDRF 68 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
No 425
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.49 E-value=82 Score=18.84 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045853 21 LTTPLVISSVVCLILFLFYISYYLFTQ 47 (184)
Q Consensus 21 ~~~~~~i~~~~~li~~~~~i~~~~~~~ 47 (184)
+++.+++..+++++++.-++.|..+.+
T Consensus 14 lIVLlvV~g~ll~flvGnyvlY~Yaqk 40 (69)
T PF04689_consen 14 LIVLLVVAGLLLVFLVGNYVLYVYAQK 40 (69)
T ss_pred eEEeehHHHHHHHHHHHHHHHHHHHhh
No 426
>PHA02902 putative IMV membrane protein; Provisional
Probab=20.42 E-value=2.1e+02 Score=17.15 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 045853 28 SSVVCLILFLFYISYYLFTQLYS 50 (184)
Q Consensus 28 ~~~~~li~~~~~i~~~~~~~~~~ 50 (184)
+.+..++++++..+++..+++.+
T Consensus 6 fvi~~v~v~Ivclliya~YrR~k 28 (70)
T PHA02902 6 FVILAVIVIIFCLLIYAAYKRYK 28 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
No 427
>KOG3816 consensus Cell differentiation regulator of the Headcase family [Signal transduction mechanisms]
Probab=20.36 E-value=50 Score=27.32 Aligned_cols=27 Identities=26% Similarity=0.832 Sum_probs=0.0
Q ss_pred ccCcccccCCccceeecCCCccccHhhHHHH
Q 045853 123 VICLEEFRDGDECKVRSKCNHIFHQTCMDDW 153 (184)
Q Consensus 123 ~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~W 153 (184)
.||.--.-.++.+. |+..+|.+|+..|
T Consensus 92 ~~C~~VvCNNE~C~----~~~~MH~qCF~~W 118 (526)
T KOG3816|consen 92 LICSFVVCNNEHCP----CSTWMHLQCFYEW 118 (526)
T ss_pred hhceEEeecCCCCC----hhhHHHHHHHHHH
No 428
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=20.27 E-value=2.1e+02 Score=17.14 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 045853 25 LVISSVVCLILFLFYISYYLFTQLYSS 51 (184)
Q Consensus 25 ~~i~~~~~li~~~~~i~~~~~~~~~~~ 51 (184)
++++.+++.+++.+|+....+.+....
T Consensus 2 ~iilali~G~~~Gff~ar~~~~k~l~~ 28 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARKYMEKQLKE 28 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
No 429
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=20.25 E-value=3.4e+02 Score=19.49 Aligned_cols=61 Identities=15% Similarity=0.244 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHhhhhHHHHHHHHHhh
Q 045853 16 LRLLVLTTPLVISSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLSSQQQQQQRVII 76 (184)
Q Consensus 16 ~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 76 (184)
...+..+..++...+.++++++..+..+...++..++...............+.+..+...
T Consensus 145 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (257)
T PF00001_consen 145 SQIYFIYFFIVFFILPLIIILICYIRILRKLRRQRKRIKSQSSSSSRRRSRRERRAARTLL 205 (257)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCTCCHTSHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccceeeeeeecccccccccccccccccccccccccccccccccccccc
No 430
>PF10886 DUF2685: Protein of unknown function (DUF2685); InterPro: IPR024362 This is a family of uncharacterised bacteriophage proteins. Their function in unknown.
Probab=20.25 E-value=40 Score=19.43 Aligned_cols=10 Identities=20% Similarity=0.876 Sum_probs=0.0
Q ss_pred cccccccccc
Q 045853 160 CPLCRGRVRR 169 (184)
Q Consensus 160 CP~CR~~i~~ 169 (184)
|.+||++|..
T Consensus 4 CvVCKqpi~~ 13 (54)
T PF10886_consen 4 CVVCKQPIDD 13 (54)
T ss_pred eeeeCCccCc
No 431
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=20.19 E-value=2.6e+02 Score=22.87 Aligned_cols=65 Identities=11% Similarity=0.191 Sum_probs=0.0
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHhhhhHHHHHHH
Q 045853 8 STCPNDEGLRLLVLTTPLVISSVVCLILFLFYISYYLFTQLYSSRIQTQNQDIEQGLSSQQQQQQ 72 (184)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 72 (184)
..++......+..-++..++..++++++++.++-+.+.++...++..-..++..+...+.+.+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~ 232 (349)
T PRK12721 168 PYCGAACGLPVVSTLIFWLWGGLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPE 232 (349)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHH
No 432
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=20.12 E-value=1.4e+02 Score=17.48 Aligned_cols=20 Identities=10% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045853 20 VLTTPLVISSVVCLILFLFY 39 (184)
Q Consensus 20 ~~~~~~~i~~~~~li~~~~~ 39 (184)
++++++-++++.+.+.++++
T Consensus 5 ~~Lipvsi~l~~v~l~~flW 24 (58)
T COG3197 5 YILIPVSILLGAVGLGAFLW 24 (58)
T ss_pred eeHHHHHHHHHHHHHHHHHH
No 433
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=20.08 E-value=2.6e+02 Score=18.25 Aligned_cols=42 Identities=10% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045853 2 PFAATPSTCPNDEGLRLLVLTTPLVISSVVCLILFLFYISYY 43 (184)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~i~~~ 43 (184)
|-....+++|.-+|....--++.-++.++++.+++..++.+.
T Consensus 55 P~~~~l~S~PgREg~~~~AG~~tn~fyGf~igL~i~~lva~~ 96 (97)
T PF05440_consen 55 PRTPPLNSFPGREGTYYIAGIFTNMFYGFIIGLVIAGLVALI 96 (97)
T ss_pred CCCCccccCCCCccceeehhhhhhHHHHHHHHHHHHHHHHHh
No 434
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=20.06 E-value=44 Score=25.20 Aligned_cols=29 Identities=28% Similarity=0.755 Sum_probs=0.0
Q ss_pred ceeecCCCccccHhhHHHHhcCCCccccccc
Q 045853 135 CKVRSKCNHIFHQTCMDDWLDDHSTCPLCRG 165 (184)
Q Consensus 135 ~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 165 (184)
+|+. |||.=-.-=....-..-.+||.||+
T Consensus 169 cRV~--CgHC~~tFLfnt~tnaLArCPHCrK 197 (275)
T KOG4684|consen 169 CRVK--CGHCNETFLFNTLTNALARCPHCRK 197 (275)
T ss_pred eEEE--ecCccceeehhhHHHHHhcCCcccc
Done!