Query 045853
Match_columns 184
No_of_seqs 168 out of 1781
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 10:30:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045853.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045853hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iym_A EL5; ring-H2 finger, ub 99.8 4.3E-19 1.5E-23 104.3 3.5 52 117-168 3-54 (55)
2 2kiz_A E3 ubiquitin-protein li 99.7 3.8E-18 1.3E-22 104.9 5.2 55 115-170 10-64 (69)
3 2ect_A Ring finger protein 126 99.7 4.6E-18 1.6E-22 107.0 5.5 61 113-174 9-69 (78)
4 2ecl_A Ring-box protein 2; RNF 99.7 3.5E-18 1.2E-22 108.3 4.7 54 117-170 13-77 (81)
5 2ep4_A Ring finger protein 24; 99.7 6E-18 2.1E-22 105.4 5.7 56 115-171 11-66 (74)
6 2l0b_A E3 ubiquitin-protein li 99.7 3.7E-18 1.3E-22 110.6 4.8 54 115-169 36-89 (91)
7 1x4j_A Ring finger protein 38; 99.7 2.4E-18 8.2E-23 107.5 3.3 53 116-169 20-72 (75)
8 2ecm_A Ring finger and CHY zin 99.7 1.1E-17 3.7E-22 98.2 3.3 51 118-168 4-54 (55)
9 3ng2_A RNF4, snurf, ring finge 99.7 4.2E-17 1.4E-21 100.7 3.5 59 116-174 7-68 (71)
10 2ea6_A Ring finger protein 4; 99.6 6.3E-17 2.2E-21 99.2 3.2 56 114-169 10-68 (69)
11 2d8t_A Dactylidin, ring finger 99.6 8.2E-17 2.8E-21 99.4 3.5 56 115-174 11-66 (71)
12 3dpl_R Ring-box protein 1; ubi 99.6 1.2E-16 4.1E-21 105.9 4.3 51 118-168 36-100 (106)
13 1v87_A Deltex protein 2; ring- 99.6 4.9E-16 1.7E-20 104.7 6.2 53 118-170 24-95 (114)
14 2xeu_A Ring finger protein 4; 99.6 1.4E-16 4.8E-21 96.2 2.6 55 118-172 2-59 (64)
15 2ct2_A Tripartite motif protei 99.6 1.3E-15 4.3E-20 97.8 5.3 58 114-171 10-70 (88)
16 2ecn_A Ring finger protein 141 99.6 7.7E-16 2.6E-20 94.7 3.9 51 116-171 12-62 (70)
17 2djb_A Polycomb group ring fin 99.6 1.3E-15 4.4E-20 94.2 4.8 54 115-171 11-64 (72)
18 2d8s_A Cellular modulator of i 99.6 1.3E-15 4.3E-20 95.9 4.5 57 113-171 9-72 (80)
19 4a0k_B E3 ubiquitin-protein li 99.6 1.6E-16 5.6E-21 106.7 0.3 51 118-168 47-111 (117)
20 2csy_A Zinc finger protein 183 99.6 1.7E-15 5.9E-20 95.8 4.4 51 114-168 10-60 (81)
21 2ecy_A TNF receptor-associated 99.6 2.2E-15 7.7E-20 91.6 4.7 52 116-171 12-64 (66)
22 2ysl_A Tripartite motif-contai 99.6 4.1E-15 1.4E-19 92.2 5.5 53 115-171 16-71 (73)
23 1chc_A Equine herpes virus-1 r 99.6 1.9E-15 6.3E-20 92.4 3.5 49 118-169 4-52 (68)
24 2yur_A Retinoblastoma-binding 99.5 3E-15 1E-19 93.1 4.2 54 114-171 10-66 (74)
25 1g25_A CDK-activating kinase a 99.5 4.8E-15 1.6E-19 89.8 4.0 55 119-173 3-59 (65)
26 4ayc_A E3 ubiquitin-protein li 99.5 4.6E-15 1.6E-19 103.2 3.5 47 120-170 54-100 (138)
27 2egp_A Tripartite motif-contai 99.5 4.9E-15 1.7E-19 93.2 3.1 55 115-173 8-69 (79)
28 2ct0_A Non-SMC element 1 homol 99.5 2.1E-14 7.1E-19 88.5 5.4 49 117-168 13-63 (74)
29 2ecw_A Tripartite motif-contai 99.5 1.7E-14 6E-19 91.7 5.1 54 116-173 16-75 (85)
30 2ecv_A Tripartite motif-contai 99.5 2.2E-14 7.6E-19 91.2 5.2 55 115-173 15-75 (85)
31 1t1h_A Gspef-atpub14, armadill 99.5 2.3E-14 7.7E-19 89.9 4.7 52 116-171 5-57 (78)
32 4ap4_A E3 ubiquitin ligase RNF 99.5 9.7E-15 3.3E-19 100.6 3.2 59 117-175 5-66 (133)
33 3lrq_A E3 ubiquitin-protein li 99.5 1E-14 3.6E-19 95.9 3.1 51 120-174 23-75 (100)
34 2ysj_A Tripartite motif-contai 99.5 5.5E-14 1.9E-18 84.5 4.7 45 115-163 16-63 (63)
35 2y43_A E3 ubiquitin-protein li 99.5 4E-14 1.4E-18 92.8 4.0 48 120-171 23-71 (99)
36 2ecj_A Tripartite motif-contai 99.5 6.5E-14 2.2E-18 82.7 4.5 45 115-163 11-58 (58)
37 1e4u_A Transcriptional repress 99.4 2.8E-13 9.7E-18 84.7 6.6 57 116-172 8-65 (78)
38 3fl2_A E3 ubiquitin-protein li 99.4 4.4E-14 1.5E-18 96.4 2.8 46 120-169 53-99 (124)
39 3ztg_A E3 ubiquitin-protein li 99.4 9.7E-14 3.3E-18 89.8 3.9 51 114-168 8-61 (92)
40 2ckl_A Polycomb group ring fin 99.4 9.7E-14 3.3E-18 92.5 3.8 49 118-170 14-63 (108)
41 4ap4_A E3 ubiquitin ligase RNF 99.4 6.7E-14 2.3E-18 96.3 2.1 56 117-172 70-128 (133)
42 1jm7_A BRCA1, breast cancer ty 99.4 3.1E-13 1.1E-17 90.4 4.1 49 121-173 23-74 (112)
43 3hct_A TNF receptor-associated 99.3 3E-13 1E-17 91.5 2.8 52 116-171 15-67 (118)
44 2ckl_B Ubiquitin ligase protei 99.3 5E-13 1.7E-17 95.6 3.7 48 119-169 54-102 (165)
45 2vje_A E3 ubiquitin-protein li 99.3 3E-13 1E-17 81.5 2.1 48 118-169 7-57 (64)
46 1z6u_A NP95-like ring finger p 99.3 8.1E-13 2.8E-17 93.0 4.3 48 119-170 78-126 (150)
47 1rmd_A RAG1; V(D)J recombinati 99.3 7.2E-13 2.5E-17 89.3 3.7 50 119-172 23-73 (116)
48 3knv_A TNF receptor-associated 99.3 3.8E-13 1.3E-17 93.7 2.2 49 116-168 28-77 (141)
49 3l11_A E3 ubiquitin-protein li 99.3 1.6E-13 5.5E-18 92.4 0.1 47 119-169 15-62 (115)
50 2vje_B MDM4 protein; proto-onc 99.3 6.1E-13 2.1E-17 79.9 2.2 49 119-169 7-56 (63)
51 2kr4_A Ubiquitin conjugation f 99.3 2.6E-12 9E-17 81.7 4.8 52 116-171 11-62 (85)
52 2y1n_A E3 ubiquitin-protein li 99.3 1.6E-12 5.4E-17 103.6 4.6 49 119-171 332-381 (389)
53 2kre_A Ubiquitin conjugation f 99.3 4.2E-12 1.4E-16 83.2 5.1 52 116-171 26-77 (100)
54 1bor_A Transcription factor PM 99.3 9.4E-13 3.2E-17 77.2 1.5 46 117-169 4-49 (56)
55 1wgm_A Ubiquitin conjugation f 99.3 6.5E-12 2.2E-16 82.0 5.4 52 116-171 19-71 (98)
56 1jm7_B BARD1, BRCA1-associated 99.2 1.8E-12 6.1E-17 87.5 1.4 45 120-170 23-68 (117)
57 4ic3_A E3 ubiquitin-protein li 99.2 1.7E-12 5.9E-17 80.4 0.8 42 120-169 25-67 (74)
58 3k1l_B Fancl; UBC, ring, RWD, 99.2 3.5E-12 1.2E-16 99.1 1.8 52 117-168 306-372 (381)
59 2ea5_A Cell growth regulator w 99.2 1.9E-11 6.4E-16 74.4 3.6 48 114-169 10-58 (68)
60 3hcs_A TNF receptor-associated 99.1 3E-11 1E-15 86.6 2.8 52 116-171 15-67 (170)
61 2ecg_A Baculoviral IAP repeat- 99.1 5.4E-11 1.8E-15 73.8 2.6 42 120-169 26-68 (75)
62 2c2l_A CHIP, carboxy terminus 99.0 2.1E-10 7.3E-15 88.1 5.4 53 115-171 204-257 (281)
63 1vyx_A ORF K3, K3RING; zinc-bi 99.0 2E-10 6.8E-15 68.0 3.7 48 117-168 4-58 (60)
64 2yu4_A E3 SUMO-protein ligase 99.0 1E-10 3.6E-15 75.7 2.6 49 117-169 5-63 (94)
65 2yho_A E3 ubiquitin-protein li 99.0 4.4E-11 1.5E-15 74.9 0.6 43 120-170 19-62 (79)
66 2f42_A STIP1 homology and U-bo 99.0 6E-10 2E-14 80.0 5.7 52 116-171 103-155 (179)
67 1wim_A KIAA0161 protein; ring 98.9 4E-10 1.4E-14 72.9 2.6 51 119-170 5-67 (94)
68 3t6p_A Baculoviral IAP repeat- 98.8 7.1E-10 2.4E-14 87.7 1.1 44 118-169 294-338 (345)
69 2bay_A PRE-mRNA splicing facto 98.8 1.6E-09 5.5E-14 64.3 2.1 50 120-173 4-54 (61)
70 3htk_C E3 SUMO-protein ligase 98.8 2.4E-09 8.2E-14 80.7 3.2 50 118-171 180-234 (267)
71 3vk6_A E3 ubiquitin-protein li 98.5 5E-08 1.7E-12 62.4 3.2 48 121-171 3-51 (101)
72 3nw0_A Non-structural maintena 98.4 2.5E-07 8.6E-12 69.5 4.6 50 118-170 179-230 (238)
73 2ko5_A Ring finger protein Z; 97.1 0.00067 2.3E-08 42.6 4.3 48 115-168 24-72 (99)
74 2lri_C Autoimmune regulator; Z 97.0 0.00051 1.8E-08 40.8 3.3 48 116-167 9-60 (66)
75 1we9_A PHD finger family prote 95.4 0.0033 1.1E-07 37.0 0.4 50 117-166 4-58 (64)
76 2jun_A Midline-1; B-BOX, TRIM, 95.2 0.014 4.9E-07 37.3 3.0 35 119-154 3-37 (101)
77 2l5u_A Chromodomain-helicase-D 95.0 0.016 5.6E-07 33.6 2.5 47 116-166 8-58 (61)
78 2l43_A N-teminal domain from h 94.8 0.0078 2.7E-07 37.8 0.8 55 115-169 21-78 (88)
79 2k16_A Transcription initiatio 94.5 0.01 3.6E-07 35.9 1.0 51 118-169 17-71 (75)
80 3lqh_A Histone-lysine N-methyl 94.4 0.012 4.3E-07 42.0 1.2 48 120-167 3-64 (183)
81 2yql_A PHD finger protein 21A; 94.3 0.0063 2.2E-07 34.7 -0.4 46 116-165 6-55 (56)
82 1wil_A KIAA1045 protein; ring 93.9 0.089 3E-06 32.3 4.2 36 116-153 12-47 (89)
83 1wep_A PHF8; structural genomi 93.7 0.083 2.8E-06 32.2 4.0 51 117-168 10-65 (79)
84 1mm2_A MI2-beta; PHD, zinc fin 93.6 0.018 6.1E-07 33.5 0.6 46 118-167 8-57 (61)
85 3u5n_A E3 ubiquitin-protein li 92.8 0.02 7E-07 41.7 0.1 46 118-167 6-55 (207)
86 2ku3_A Bromodomain-containing 92.6 0.043 1.5E-06 32.9 1.3 51 116-166 13-66 (71)
87 2vpb_A Hpygo1, pygopus homolog 92.3 0.094 3.2E-06 30.8 2.6 35 117-151 6-41 (65)
88 3o36_A Transcription intermedi 92.0 0.032 1.1E-06 39.8 0.3 46 119-168 4-53 (184)
89 1f62_A Transcription factor WS 91.5 0.079 2.7E-06 29.3 1.5 44 121-165 2-49 (51)
90 3v43_A Histone acetyltransfera 91.5 0.042 1.4E-06 36.0 0.4 45 121-165 63-111 (112)
91 2puy_A PHD finger protein 21A; 91.5 0.026 8.9E-07 32.6 -0.6 46 119-168 5-54 (60)
92 1xwh_A Autoimmune regulator; P 91.3 0.045 1.5E-06 32.2 0.3 46 118-167 7-56 (66)
93 1wem_A Death associated transc 91.1 0.11 3.6E-06 31.5 1.9 46 120-167 17-71 (76)
94 3m62_A Ubiquitin conjugation f 90.8 0.12 4E-06 45.9 2.6 51 117-171 889-940 (968)
95 2kgg_A Histone demethylase jar 90.7 0.055 1.9E-06 30.2 0.3 44 121-164 4-52 (52)
96 2e6r_A Jumonji/ARID domain-con 90.5 0.073 2.5E-06 33.6 0.8 50 117-167 14-67 (92)
97 3v43_A Histone acetyltransfera 90.3 0.42 1.4E-05 31.1 4.4 34 118-151 4-42 (112)
98 2ysm_A Myeloid/lymphoid or mix 90.1 0.088 3E-06 34.3 0.9 38 117-155 5-42 (111)
99 2ri7_A Nucleosome-remodeling f 89.9 0.075 2.6E-06 37.5 0.5 48 118-166 7-59 (174)
100 1wee_A PHD finger family prote 89.8 0.062 2.1E-06 32.2 0.0 49 118-167 15-67 (72)
101 2yt5_A Metal-response element- 89.1 0.18 6.2E-06 29.4 1.7 51 117-167 4-62 (66)
102 2lv9_A Histone-lysine N-methyl 88.6 0.17 5.8E-06 32.2 1.4 46 118-165 27-75 (98)
103 1fp0_A KAP-1 corepressor; PHD 88.6 0.32 1.1E-05 30.3 2.7 46 117-166 23-72 (88)
104 2xb1_A Pygopus homolog 2, B-ce 88.2 0.26 8.8E-06 31.8 2.1 49 120-168 4-63 (105)
105 3asl_A E3 ubiquitin-protein li 88.2 0.088 3E-06 31.4 -0.1 44 121-165 20-68 (70)
106 2ro1_A Transcription intermedi 88.0 0.11 3.7E-06 37.3 0.3 44 120-167 3-50 (189)
107 2e6s_A E3 ubiquitin-protein li 87.9 0.075 2.6E-06 32.3 -0.5 44 121-165 28-76 (77)
108 1wfk_A Zinc finger, FYVE domai 87.8 0.4 1.4E-05 29.8 2.8 55 117-171 7-68 (88)
109 3o70_A PHD finger protein 13; 87.7 0.12 4.2E-06 30.6 0.3 47 117-165 17-66 (68)
110 2ks1_B Epidermal growth factor 87.3 0.29 1E-05 26.2 1.6 6 9-14 2-7 (44)
111 1wen_A Inhibitor of growth fam 87.3 0.52 1.8E-05 28.0 3.0 46 117-167 14-66 (71)
112 4gne_A Histone-lysine N-methyl 87.0 0.39 1.3E-05 31.1 2.5 46 116-167 12-63 (107)
113 1wev_A Riken cDNA 1110020M19; 86.5 0.09 3.1E-06 32.8 -0.8 52 118-169 15-75 (88)
114 1weu_A Inhibitor of growth fam 86.5 0.57 1.9E-05 29.4 2.9 46 117-167 34-86 (91)
115 1y02_A CARP2, FYVE-ring finger 86.5 0.11 3.7E-06 34.5 -0.5 48 120-167 20-67 (120)
116 2kwj_A Zinc finger protein DPF 86.4 0.2 6.7E-06 32.8 0.8 34 120-153 2-41 (114)
117 1vfy_A Phosphatidylinositol-3- 85.8 0.55 1.9E-05 28.0 2.5 33 120-152 12-44 (73)
118 1z2q_A LM5-1; membrane protein 85.1 0.97 3.3E-05 27.7 3.5 54 117-170 19-80 (84)
119 2yw8_A RUN and FYVE domain-con 85.1 0.61 2.1E-05 28.5 2.6 51 118-168 18-74 (82)
120 3ask_A E3 ubiquitin-protein li 85.0 0.3 1E-05 35.9 1.3 45 121-166 176-225 (226)
121 3shb_A E3 ubiquitin-protein li 84.3 0.16 5.6E-06 30.8 -0.3 45 121-166 28-77 (77)
122 1wew_A DNA-binding family prot 84.2 0.55 1.9E-05 28.4 2.0 48 118-167 15-73 (78)
123 3t7l_A Zinc finger FYVE domain 83.7 0.59 2E-05 29.2 2.0 51 119-169 20-76 (90)
124 1z60_A TFIIH basal transcripti 83.4 0.71 2.4E-05 26.4 2.1 42 121-163 17-58 (59)
125 2cu8_A Cysteine-rich protein 2 83.2 0.77 2.6E-05 27.2 2.4 41 119-170 9-49 (76)
126 3c6w_A P28ING5, inhibitor of g 83.2 0.4 1.4E-05 27.4 1.0 42 119-165 9-57 (59)
127 1joc_A EEA1, early endosomal a 82.7 0.64 2.2E-05 30.9 2.0 35 119-153 69-103 (125)
128 2rsd_A E3 SUMO-protein ligase 82.7 0.17 5.7E-06 29.9 -0.8 44 120-165 11-64 (68)
129 2vnf_A ING 4, P29ING4, inhibit 82.3 0.43 1.5E-05 27.3 0.9 42 119-165 10-58 (60)
130 2co8_A NEDD9 interacting prote 81.5 1.1 3.8E-05 27.1 2.7 43 118-171 14-56 (82)
131 1x4l_A Skeletal muscle LIM-pro 81.0 1.1 3.8E-05 26.2 2.5 41 120-170 6-48 (72)
132 2lbm_A Transcriptional regulat 80.9 1.8 6.3E-05 29.4 3.8 46 117-166 61-117 (142)
133 1g47_A Pinch protein; LIM doma 80.9 1.7 5.8E-05 25.6 3.4 43 119-171 11-53 (77)
134 1x4u_A Zinc finger, FYVE domai 80.7 1.4 4.7E-05 27.0 2.9 35 118-152 13-47 (84)
135 1dvp_A HRS, hepatocyte growth 80.5 0.77 2.6E-05 33.5 2.0 36 118-153 160-195 (220)
136 1x4k_A Skeletal muscle LIM-pro 80.2 0.86 2.9E-05 26.6 1.8 41 120-170 6-46 (72)
137 1zbd_B Rabphilin-3A; G protein 80.2 0.89 3.1E-05 30.6 2.1 50 117-166 53-107 (134)
138 2cs3_A Protein C14ORF4, MY039 80.1 1.8 6.3E-05 26.2 3.2 35 117-155 13-51 (93)
139 3zyq_A Hepatocyte growth facto 80.0 0.86 2.9E-05 33.5 2.1 50 118-167 163-220 (226)
140 2zet_C Melanophilin; complex, 80.0 1.7 6E-05 29.9 3.5 48 118-166 67-117 (153)
141 3mpx_A FYVE, rhogef and PH dom 79.9 0.36 1.2E-05 38.8 0.0 50 119-168 375-431 (434)
142 2klu_A T-cell surface glycopro 79.5 0.99 3.4E-05 26.2 1.8 19 27-45 14-32 (70)
143 2dj7_A Actin-binding LIM prote 79.5 1.1 3.8E-05 27.0 2.2 41 117-168 13-53 (80)
144 1wyh_A SLIM 2, skeletal muscle 78.8 1.7 5.9E-05 25.2 2.9 42 120-171 6-47 (72)
145 2g6q_A Inhibitor of growth pro 78.0 0.77 2.6E-05 26.5 1.0 43 118-165 10-59 (62)
146 1x61_A Thyroid receptor intera 77.5 1.3 4.4E-05 25.8 2.0 40 120-169 6-45 (72)
147 3ql9_A Transcriptional regulat 77.3 3.3 0.00011 27.6 4.1 45 118-166 56-111 (129)
148 2jmi_A Protein YNG1, ING1 homo 77.1 0.72 2.5E-05 28.8 0.8 44 117-165 24-75 (90)
149 3kqi_A GRC5, PHD finger protei 76.4 0.96 3.3E-05 27.1 1.2 46 122-167 12-62 (75)
150 1iml_A CRIP, cysteine rich int 76.1 1.1 3.7E-05 26.5 1.4 38 121-169 2-39 (76)
151 2kwj_A Zinc finger protein DPF 76.0 0.28 9.7E-06 32.1 -1.4 47 121-168 60-110 (114)
152 1x68_A FHL5 protein; four-and- 75.7 1.5 5.1E-05 25.9 2.0 41 120-170 6-48 (76)
153 1weo_A Cellulose synthase, cat 75.3 12 0.00041 23.1 6.4 52 118-169 15-70 (93)
154 1x62_A C-terminal LIM domain p 74.7 1.6 5.6E-05 26.0 2.0 41 118-170 14-54 (79)
155 2knc_A Integrin alpha-IIB; tra 74.7 4.3 0.00015 22.6 3.5 15 15-29 9-23 (54)
156 2d8x_A Protein pinch; LIM doma 72.3 1.7 5.7E-05 25.2 1.5 41 119-171 5-45 (70)
157 1x64_A Alpha-actinin-2 associa 71.5 4.3 0.00015 24.7 3.4 43 117-171 23-65 (89)
158 3f6q_B LIM and senescent cell 71.0 4.2 0.00014 23.3 3.2 42 120-171 12-53 (72)
159 2dar_A PDZ and LIM domain prot 70.6 1.9 6.4E-05 26.5 1.6 41 119-171 25-65 (90)
160 1x63_A Skeletal muscle LIM-pro 70.5 2.9 9.9E-05 24.9 2.4 41 120-170 16-56 (82)
161 2cor_A Pinch protein; LIM doma 70.5 3.8 0.00013 24.4 2.9 40 119-170 15-54 (79)
162 1zfo_A LAsp-1; LIM domain, zin 70.4 1.5 5E-05 21.4 0.8 27 121-150 5-31 (31)
163 2o35_A Hypothetical protein DU 70.1 1.6 5.4E-05 27.6 1.1 11 145-155 43-53 (105)
164 3fyb_A Protein of unknown func 70.0 1.6 5.4E-05 27.5 1.1 11 145-155 42-52 (104)
165 1a7i_A QCRP2 (LIM1); LIM domai 69.1 1.5 5E-05 26.3 0.8 41 120-171 8-48 (81)
166 2d8z_A Four and A half LIM dom 69.0 3.1 0.0001 24.0 2.2 39 120-170 6-44 (70)
167 2gmg_A Hypothetical protein PF 68.2 1 3.5E-05 28.9 -0.0 26 138-168 70-95 (105)
168 3o7a_A PHD finger protein 13 v 67.6 0.95 3.3E-05 25.0 -0.3 41 124-165 8-51 (52)
169 2ehe_A Four and A half LIM dom 67.2 2.9 9.8E-05 25.0 1.9 41 120-170 16-56 (82)
170 1nyp_A Pinch protein; LIM doma 67.0 4.2 0.00014 23.0 2.5 39 120-170 6-44 (66)
171 3kv5_D JMJC domain-containing 66.9 1.3 4.5E-05 36.4 0.3 47 120-167 38-89 (488)
172 4bbq_A Lysine-specific demethy 66.8 0.44 1.5E-05 31.1 -2.1 45 121-165 61-113 (117)
173 2d8y_A Eplin protein; LIM doma 66.2 5.6 0.00019 24.3 3.1 42 119-171 15-56 (91)
174 2cup_A Skeletal muscle LIM-pro 65.8 4 0.00014 25.4 2.4 26 142-169 53-78 (101)
175 2d8v_A Zinc finger FYVE domain 65.7 4.6 0.00016 23.5 2.4 34 116-154 5-39 (67)
176 2egq_A FHL1 protein; LIM domai 65.1 3.4 0.00012 24.3 1.9 41 120-170 16-59 (77)
177 3mjh_B Early endosome antigen 63.2 0.87 3E-05 22.9 -0.9 16 119-134 5-20 (34)
178 2l8s_A Integrin alpha-1; trans 63.0 5.5 0.00019 22.2 2.3 11 16-26 7-17 (54)
179 1wig_A KIAA1808 protein; LIM d 62.7 4.3 0.00015 23.7 2.0 37 120-168 6-42 (73)
180 2a20_A Regulating synaptic mem 62.2 0.81 2.8E-05 26.0 -1.2 49 116-165 6-59 (62)
181 3a1b_A DNA (cytosine-5)-methyl 61.8 6.7 0.00023 27.1 3.0 34 118-155 78-113 (159)
182 2iyb_E Testin, TESS, TES; LIM 60.8 3.9 0.00014 23.2 1.6 41 121-171 4-46 (65)
183 2jvx_A NF-kappa-B essential mo 60.4 2 6.8E-05 20.6 0.1 12 157-168 3-14 (28)
184 2l3k_A Rhombotin-2, linker, LI 60.1 4.7 0.00016 26.3 2.0 27 121-149 10-36 (123)
185 1x6a_A LIMK-2, LIM domain kina 59.9 4.7 0.00016 23.9 1.9 38 120-169 16-53 (81)
186 1v6g_A Actin binding LIM prote 59.6 3.1 0.00011 24.8 1.0 39 120-170 16-54 (81)
187 2cur_A Skeletal muscle LIM-pro 59.1 3.2 0.00011 23.8 1.0 39 120-170 6-44 (69)
188 2rgt_A Fusion of LIM/homeobox 57.1 6.1 0.00021 27.2 2.3 38 121-168 67-104 (169)
189 2ku7_A MLL1 PHD3-CYP33 RRM chi 56.9 14 0.00049 23.9 4.1 32 140-171 7-49 (140)
190 2pv0_B DNA (cytosine-5)-methyl 55.4 8.8 0.0003 30.5 3.1 34 118-155 92-127 (386)
191 2apo_B Ribosome biogenesis pro 54.5 8.5 0.00029 21.9 2.2 25 157-181 18-42 (60)
192 3i2d_A E3 SUMO-protein ligase 53.0 9 0.00031 30.3 2.8 47 121-170 251-301 (371)
193 1x3h_A Leupaxin; paxillin fami 52.9 4.6 0.00016 23.9 0.9 40 120-171 16-55 (80)
194 2k1a_A Integrin alpha-IIB; sin 52.5 5.9 0.0002 20.8 1.2 14 14-27 6-19 (42)
195 3kv4_A PHD finger protein 8; e 52.1 2.6 8.9E-05 34.3 -0.4 48 121-168 6-58 (447)
196 2jmo_A Parkin; IBR, E3 ligase, 51.9 1.5 5E-05 26.6 -1.5 39 120-160 26-73 (80)
197 4fo9_A E3 SUMO-protein ligase 51.8 9.2 0.00031 30.1 2.7 47 121-170 217-267 (360)
198 2lcq_A Putative toxin VAPC6; P 51.2 3.9 0.00013 28.2 0.5 27 137-169 134-160 (165)
199 2l4z_A DNA endonuclease RBBP8, 51.0 9.6 0.00033 24.9 2.4 39 119-168 61-99 (123)
200 2dlo_A Thyroid receptor-intera 49.9 6.5 0.00022 23.3 1.3 40 119-170 15-54 (81)
201 1x4i_A Inhibitor of growth pro 47.6 9.1 0.00031 22.4 1.6 46 121-169 8-58 (70)
202 2jny_A Uncharacterized BCR; st 47.1 3.1 0.00011 24.3 -0.5 19 151-169 4-22 (67)
203 1b8t_A Protein (CRP1); LIM dom 47.1 7.2 0.00025 27.5 1.3 41 119-170 115-155 (192)
204 2pk7_A Uncharacterized protein 46.4 3.3 0.00011 24.4 -0.4 18 151-168 2-19 (69)
205 1rut_X Flinc4, fusion protein 45.9 13 0.00043 26.1 2.5 38 121-168 71-108 (188)
206 2aus_D NOP10, ribosome biogene 45.3 13 0.00044 21.2 2.0 25 157-181 17-41 (60)
207 2jtn_A LIM domain-binding prot 44.9 9.5 0.00032 26.6 1.7 10 121-130 89-98 (182)
208 2l6w_A Beta-type platelet-deri 50.3 4.7 0.00016 20.7 0.0 9 40-48 27-35 (39)
209 2ct7_A Ring finger protein 31; 44.3 1.6 5.6E-05 26.8 -2.2 44 122-165 28-75 (86)
210 2cuq_A Four and A half LIM dom 44.2 12 0.00041 22.0 1.8 38 120-169 16-53 (80)
211 3pwf_A Rubrerythrin; non heme 43.9 10 0.00035 26.4 1.7 25 135-166 138-162 (170)
212 2kpi_A Uncharacterized protein 43.0 14 0.00047 20.6 1.8 28 118-145 9-38 (56)
213 1wd2_A Ariadne-1 protein homol 40.9 7.3 0.00025 22.1 0.4 16 156-171 5-20 (60)
214 3j1r_A Archaeal adhesion filam 40.8 28 0.00097 16.0 3.8 11 33-43 12-22 (26)
215 2akl_A PHNA-like protein PA012 39.0 18 0.00061 24.1 2.1 26 119-144 27-53 (138)
216 1lko_A Rubrerythrin all-iron(I 38.8 9.8 0.00034 27.0 1.0 25 136-166 156-180 (191)
217 2jne_A Hypothetical protein YF 38.4 9.6 0.00033 24.0 0.7 40 120-168 33-72 (101)
218 1loi_A Cyclic 3',5'-AMP specif 38.3 1.9 6.4E-05 19.4 -1.8 12 144-155 6-17 (26)
219 2xqn_T Testin, TESS; metal-bin 37.4 19 0.00064 23.2 2.1 38 121-168 65-104 (126)
220 1yuz_A Nigerythrin; rubrythrin 37.1 16 0.00053 26.2 1.8 24 136-166 172-195 (202)
221 2jr6_A UPF0434 protein NMA0874 37.0 3.3 0.00011 24.3 -1.5 16 153-168 4-19 (68)
222 2csz_A Synaptotagmin-like prot 36.6 26 0.00089 20.9 2.4 34 116-149 22-56 (76)
223 1m3v_A FLIN4, fusion of the LI 36.2 34 0.0011 22.0 3.2 50 121-172 34-84 (122)
224 2fiy_A Protein FDHE homolog; F 34.5 3.1 0.0001 32.1 -2.5 49 117-166 180-231 (309)
225 2js4_A UPF0434 protein BB2007; 33.6 3.7 0.00013 24.2 -1.7 16 153-168 4-19 (70)
226 2hf1_A Tetraacyldisaccharide-1 31.9 3.3 0.00011 24.3 -2.1 12 157-168 8-19 (68)
227 2xjy_A Rhombotin-2; oncoprotei 30.1 49 0.0017 21.2 3.3 27 142-168 51-77 (131)
228 1j2o_A FLIN2, fusion of rhombo 30.1 23 0.00078 22.5 1.6 37 121-168 5-41 (114)
229 2lq6_A Bromodomain-containing 26.5 55 0.0019 19.9 2.8 34 119-153 17-51 (87)
230 3hb3_B Cytochrome C oxidase su 25.8 2.2E+02 0.0075 21.6 6.7 8 148-155 266-273 (298)
231 2i50_A Ubiquitin carboxyl-term 25.4 15 0.0005 24.3 -0.0 27 140-166 6-37 (126)
232 1lv3_A Hypothetical protein YA 25.2 32 0.0011 20.1 1.4 10 159-168 11-20 (68)
233 3i1m_R 30S ribosomal protein S 25.1 18 0.00063 21.5 0.4 18 154-171 5-22 (75)
234 3vhs_A ATPase wrnip1; zinc fin 24.6 19 0.00064 16.6 0.3 9 159-167 8-16 (29)
235 2jrp_A Putative cytoplasmic pr 24.5 25 0.00084 21.3 0.9 12 121-132 4-15 (81)
236 1l8d_A DNA double-strand break 24.0 19 0.00063 22.9 0.3 6 121-126 49-54 (112)
237 2rh1_A Beta-2-adrenergic recep 23.4 1.4E+02 0.0047 23.8 5.5 9 122-130 417-425 (500)
238 2vrw_B P95VAV, VAV1, proto-onc 21.6 57 0.0019 25.6 2.7 35 118-152 356-391 (406)
239 2k5r_A Uncharacterized protein 21.6 11 0.00039 23.6 -1.1 18 152-169 3-20 (97)
240 1pft_A TFIIB, PFTFIIBN; N-term 20.4 55 0.0019 17.3 1.7 27 121-147 7-36 (50)
No 1
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.75 E-value=4.3e-19 Score=104.29 Aligned_cols=52 Identities=46% Similarity=1.057 Sum_probs=46.6
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
+++.+|+||++++..++.+..++.|||.||..||.+|++.+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4456899999999999888888679999999999999999999999999873
No 2
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=3.8e-18 Score=104.90 Aligned_cols=55 Identities=33% Similarity=0.896 Sum_probs=47.3
Q ss_pred cCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 115 AVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
....+.+|+||++.|..++.++.+ +|||.||..||..|+..+.+||+||+.+...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRL-PCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEEC-TTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEe-CCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 345567899999999888777777 5999999999999999889999999998643
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.72 E-value=4.6e-18 Score=107.01 Aligned_cols=61 Identities=30% Similarity=0.843 Sum_probs=51.3
Q ss_pred cccCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccccCCC
Q 045853 113 DDAVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAWPS 174 (184)
Q Consensus 113 ~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~~~ 174 (184)
.+....+.+|+||++.|...+.+..+ +|||.||..||..|+..+.+||+||+.+.......
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQL-PCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEEC-TTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred cccCCCCCCCeeCCccccCCCCEEEe-CCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence 33445667899999999988877777 49999999999999999999999999997665443
No 4
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.5e-18 Score=108.31 Aligned_cols=54 Identities=35% Similarity=0.756 Sum_probs=44.6
Q ss_pred CCCcccccCcccccC-----------CccceeecCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 117 NKTSTCVICLEEFRD-----------GDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~-----------~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
.++..|+||+++|.+ ++.++.+++|||.||.+||++|+..+.+||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 345678888888864 455677778999999999999999999999999988543
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=6e-18 Score=105.41 Aligned_cols=56 Identities=38% Similarity=0.915 Sum_probs=48.8
Q ss_pred cCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 115 AVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
....+.+|+||++.|...+.++.++ |||.||..||..|++.+.+||+||+.+....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 3455678999999999988888774 9999999999999998889999999997544
No 6
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.72 E-value=3.7e-18 Score=110.63 Aligned_cols=54 Identities=37% Similarity=0.861 Sum_probs=47.9
Q ss_pred cCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccc
Q 045853 115 AVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
...++..|+||+++|..++.++.++ |||.||..||..|+..+.+||+||+.+.+
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 3456678999999999999888885 99999999999999999999999998853
No 7
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-18 Score=107.53 Aligned_cols=53 Identities=36% Similarity=0.928 Sum_probs=47.1
Q ss_pred CCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccc
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
..++.+|+||+++|..++.++.++ |||.||..||..|++.+.+||+||+++.+
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 345668999999999988888885 99999999999999989999999998854
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.69 E-value=1.1e-17 Score=98.21 Aligned_cols=51 Identities=33% Similarity=0.789 Sum_probs=43.7
Q ss_pred CCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccc
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
++.+|+||++++.+++.....++|||.||..||..|+..+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 446899999999876655555679999999999999998899999999874
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.66 E-value=4.2e-17 Score=100.68 Aligned_cols=59 Identities=27% Similarity=0.727 Sum_probs=47.1
Q ss_pred CCCCcccccCcccccCC---ccceeecCCCccccHhhHHHHhcCCCcccccccccccccCCC
Q 045853 116 VNKTSTCVICLEEFRDG---DECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAWPS 174 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~---~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~~~ 174 (184)
..++.+|+||++.+.+. +...+.++|||.||..||..|+..+.+||+||+.+....+..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 68 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 68 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheee
Confidence 34556899999999763 233355579999999999999998899999999997665443
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=6.3e-17 Score=99.25 Aligned_cols=56 Identities=29% Similarity=0.734 Sum_probs=44.9
Q ss_pred ccCCCCcccccCcccccCC---ccceeecCCCccccHhhHHHHhcCCCccccccccccc
Q 045853 114 DAVNKTSTCVICLEEFRDG---DECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 114 ~~~~~~~~C~ICl~~~~~~---~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
....+..+|+||++.+.+. ....++++|||.||..||..|+..+.+||+||+.+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3345667899999999864 2223445799999999999999988999999998853
No 11
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=8.2e-17 Score=99.44 Aligned_cols=56 Identities=25% Similarity=0.459 Sum_probs=46.2
Q ss_pred cCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccccCCC
Q 045853 115 AVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAWPS 174 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~~~ 174 (184)
...++.+|+||++.+.+ .+.++|||.||..||..|+..+.+||+||+.+....+..
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVH----PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDS 66 (71)
T ss_dssp SSSSCCBCSSSSSBCSS----EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSC
T ss_pred cCCCCCCCccCCcccCC----CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccC
Confidence 34556789999999977 444469999999999999999999999999997655443
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.64 E-value=1.2e-16 Score=105.90 Aligned_cols=51 Identities=29% Similarity=0.664 Sum_probs=41.6
Q ss_pred CCcccccCcccccCC--------------ccceeecCCCccccHhhHHHHhcCCCcccccccccc
Q 045853 118 KTSTCVICLEEFRDG--------------DECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~--------------~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
++..|+||++.|... +....+++|||.||..||..||..+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 456899999999854 112344479999999999999999999999999853
No 13
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.62 E-value=4.9e-16 Score=104.66 Aligned_cols=53 Identities=26% Similarity=0.612 Sum_probs=42.0
Q ss_pred CCcccccCcccccCCc--------------cceeecCCCccccHhhHHHHh-----cCCCcccccccccccc
Q 045853 118 KTSTCVICLEEFRDGD--------------ECKVRSKCNHIFHQTCMDDWL-----DDHSTCPLCRGRVRRI 170 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~--------------~~~~l~~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~i~~~ 170 (184)
.+.+|+||+++|...+ .+..+++|||+||..||..|+ ..+.+||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3458999999997643 233355799999999999999 5677999999988543
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.62 E-value=1.4e-16 Score=96.23 Aligned_cols=55 Identities=27% Similarity=0.775 Sum_probs=44.4
Q ss_pred CCcccccCcccccCC---ccceeecCCCccccHhhHHHHhcCCCcccccccccccccC
Q 045853 118 KTSTCVICLEEFRDG---DECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAW 172 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~---~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~ 172 (184)
++.+|+||++.+.+. ......++|||.||..|+.+|+..+.+||+||+.+....+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 345899999999863 2333444799999999999999989999999999876543
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.3e-15 Score=97.85 Aligned_cols=58 Identities=26% Similarity=0.623 Sum_probs=47.5
Q ss_pred ccCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCC---Cccccccccccccc
Q 045853 114 DAVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDH---STCPLCRGRVRRIA 171 (184)
Q Consensus 114 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~i~~~~ 171 (184)
+...+..+|+||++.|.+++...+.++|||.||..|+..|+..+ .+||+||+.+...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 34456678999999999877645555799999999999999865 78999999886554
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=7.7e-16 Score=94.71 Aligned_cols=51 Identities=33% Similarity=0.875 Sum_probs=43.8
Q ss_pred CCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
..+...|+||++.+.+ ..+ +|||.||..||..|+..+.+||+||+.+....
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LIL-PCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEE-TTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCCeeCCcCccC----ccc-CCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 4556789999999987 555 59999999999999999999999999987543
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.3e-15 Score=94.24 Aligned_cols=54 Identities=22% Similarity=0.487 Sum_probs=44.3
Q ss_pred cCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 115 AVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
...+...|+||++.+.+. ..+.+|||.||..||..|+..+.+||+||+.+....
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred hcCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 345566899999999871 233379999999999999998899999999997554
No 18
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.3e-15 Score=95.88 Aligned_cols=57 Identities=25% Similarity=0.592 Sum_probs=45.2
Q ss_pred cccCCCCcccccCcccccCCccceeecCCC-----ccccHhhHHHHhcCC--Cccccccccccccc
Q 045853 113 DDAVNKTSTCVICLEEFRDGDECKVRSKCN-----HIFHQTCMDDWLDDH--STCPLCRGRVRRIA 171 (184)
Q Consensus 113 ~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR~~i~~~~ 171 (184)
.....++..|.||+++|.+++.+ ++ +|+ |.||..||++|+..+ .+||+||..+....
T Consensus 9 s~~~~~~~~C~IC~~~~~~~~~l-~~-pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 9 SITPSSQDICRICHCEGDDESPL-IT-PCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CCCCTTSCCCSSSCCCCCSSSCE-EC-SSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCCCCeEcCccccCCCee-Ee-ccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 33445567899999999887765 45 596 999999999999854 58999999986433
No 19
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.58 E-value=1.6e-16 Score=106.68 Aligned_cols=51 Identities=31% Similarity=0.738 Sum_probs=0.9
Q ss_pred CCcccccCcccccC-------------Ccc-ceeecCCCccccHhhHHHHhcCCCcccccccccc
Q 045853 118 KTSTCVICLEEFRD-------------GDE-CKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 118 ~~~~C~ICl~~~~~-------------~~~-~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
+++.|+||+++|.+ +++ .+..++|+|.||..||++|+..+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 44689999999975 222 2333479999999999999999999999999863
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.7e-15 Score=95.80 Aligned_cols=51 Identities=24% Similarity=0.621 Sum_probs=43.6
Q ss_pred ccCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccc
Q 045853 114 DAVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 114 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
+.......|+||++.+.+ .+.++|||.||..||..|+....+||+||+.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQN----PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SCCCCCSBCSSSCSBCCS----EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred ccCCCCCCCcCCCchhcC----eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 334556789999999977 555679999999999999998899999999985
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.2e-15 Score=91.56 Aligned_cols=52 Identities=21% Similarity=0.538 Sum_probs=42.7
Q ss_pred CCCCcccccCcccccCCccceeecCCCccccHhhHHHHhc-CCCccccccccccccc
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD-DHSTCPLCRGRVRRIA 171 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~~ 171 (184)
..+...|+||++.+.+ .+..+|||.||..||..|+. .+.+||+||+.+....
T Consensus 12 ~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCS----PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCCEECTTTCCEESS----CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CCcCCCCCCCChHhcC----eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 4556789999999987 33347999999999999994 6678999999986543
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=4.1e-15 Score=92.15 Aligned_cols=53 Identities=30% Similarity=0.695 Sum_probs=43.4
Q ss_pred cCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhc---CCCccccccccccccc
Q 045853 115 AVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD---DHSTCPLCRGRVRRIA 171 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~i~~~~ 171 (184)
...+...|+||++.+.+ .+..+|||.||..||..|+. .+..||+||+.+...+
T Consensus 16 ~~~~~~~C~IC~~~~~~----~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 16 KLQEEVICPICLDILQK----PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCBCTTTCSBCSS----EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred hCccCCEeccCCcccCC----eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 34566789999999987 44447999999999999997 4668999999986543
No 23
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.55 E-value=1.9e-15 Score=92.43 Aligned_cols=49 Identities=33% Similarity=0.794 Sum_probs=41.1
Q ss_pred CCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccc
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
.+.+|+||++.+.+. . ...+|||.||..|+..|+..+.+||+||+.+..
T Consensus 4 ~~~~C~IC~~~~~~~--~-~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNY--S-MALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSC--E-EETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCC--c-EecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 445899999998752 2 344699999999999999988999999999864
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.55 E-value=3e-15 Score=93.10 Aligned_cols=54 Identities=24% Similarity=0.541 Sum_probs=43.1
Q ss_pred ccCCCCcccccCcccccCCccceeecC-CCccccHhhHHHHhcCC--Cccccccccccccc
Q 045853 114 DAVNKTSTCVICLEEFRDGDECKVRSK-CNHIFHQTCMDDWLDDH--STCPLCRGRVRRIA 171 (184)
Q Consensus 114 ~~~~~~~~C~ICl~~~~~~~~~~~l~~-C~H~FH~~Ci~~Wl~~~--~~CP~CR~~i~~~~ 171 (184)
....++..|+||++.|.+ .+.++ |||.||..||..|+..+ .+||+||+.+...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CCSCGGGSCSSSCCCCTT----CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred ccCCCCCCCcCCChHHhC----CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 344556789999999987 44456 99999999999999854 68999999765433
No 25
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.53 E-value=4.8e-15 Score=89.82 Aligned_cols=55 Identities=20% Similarity=0.529 Sum_probs=43.6
Q ss_pred CcccccCcc-cccCCccceeecCCCccccHhhHHHHhc-CCCcccccccccccccCC
Q 045853 119 TSTCVICLE-EFRDGDECKVRSKCNHIFHQTCMDDWLD-DHSTCPLCRGRVRRIAWP 173 (184)
Q Consensus 119 ~~~C~ICl~-~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~~~~ 173 (184)
+..|+||++ .+.+.....++.+|||.||..||..|+. ....||+||+.+....+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccce
Confidence 457999999 7777655445557999999999999976 456799999999765543
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.52 E-value=4.6e-15 Score=103.20 Aligned_cols=47 Identities=32% Similarity=0.921 Sum_probs=41.2
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
..|+||++.|.+ ++.++|||.||..||..|+..+.+||+||+++...
T Consensus 54 ~~C~iC~~~~~~----~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 54 LQCIICSEYFIE----AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp SBCTTTCSBCSS----EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred CCCcccCcccCC----ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 479999999987 45557999999999999999999999999998543
No 27
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.52 E-value=4.9e-15 Score=93.15 Aligned_cols=55 Identities=25% Similarity=0.542 Sum_probs=44.8
Q ss_pred cCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcC-------CCcccccccccccccCC
Q 045853 115 AVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD-------HSTCPLCRGRVRRIAWP 173 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~~i~~~~~~ 173 (184)
...+..+|+||++.|.+ .+.++|||.||..||..|+.. ...||+||+.+...++.
T Consensus 8 ~~~~~~~C~IC~~~~~~----p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 69 (79)
T 2egp_A 8 NVQEEVTCPICLELLTE----PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQ 69 (79)
T ss_dssp CCCCCCEETTTTEECSS----CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGG
T ss_pred hcccCCCCcCCCcccCC----eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCC
Confidence 34566789999999987 444479999999999999986 67899999999765543
No 28
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2.1e-14 Score=88.54 Aligned_cols=49 Identities=22% Similarity=0.694 Sum_probs=42.1
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCC--Ccccccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDH--STCPLCRGRVR 168 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~i~ 168 (184)
+...+|+||.+.+..++... .|+|.||..||.+||+.+ .+||+||+++.
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 34468999999999876554 699999999999999976 88999999875
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=1.7e-14 Score=91.73 Aligned_cols=54 Identities=30% Similarity=0.668 Sum_probs=44.5
Q ss_pred CCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcC------CCcccccccccccccCC
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD------HSTCPLCRGRVRRIAWP 173 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~i~~~~~~ 173 (184)
..+...|+||++.+.+ .+.++|||.||..|+..|+.. ...||+||+.+....+.
T Consensus 16 ~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecw_A 16 IKEEVTCPICLELLKE----PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLK 75 (85)
T ss_dssp CCTTTSCTTTCSCCSS----CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCE
T ss_pred CccCCCCcCCChhhCc----ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCC
Confidence 4556789999999987 444579999999999999986 67899999998765443
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.2e-14 Score=91.25 Aligned_cols=55 Identities=31% Similarity=0.628 Sum_probs=45.1
Q ss_pred cCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcC------CCcccccccccccccCC
Q 045853 115 AVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD------HSTCPLCRGRVRRIAWP 173 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~i~~~~~~ 173 (184)
...+..+|+||++.+.+ .+.++|||.||..|+..|+.. ...||+||+.+....+.
T Consensus 15 ~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQ----PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75 (85)
T ss_dssp CCCCCCCCTTTCSCCSS----CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCC
T ss_pred HccCCCCCCCCCcccCC----ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcC
Confidence 34556789999999987 344479999999999999986 78899999999765543
No 31
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.49 E-value=2.3e-14 Score=89.93 Aligned_cols=52 Identities=25% Similarity=0.541 Sum_probs=43.8
Q ss_pred CCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcC-CCccccccccccccc
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD-HSTCPLCRGRVRRIA 171 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~~ 171 (184)
..+...|+||++.|.+ .+..+|||.||..||..|+.. +.+||+||+.+....
T Consensus 5 ~~~~~~C~IC~~~~~~----Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD----PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp CSSSSSCTTTSCCCSS----EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred CcccCCCCCccccccC----CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 3455689999999987 555579999999999999986 789999999986544
No 32
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.49 E-value=9.7e-15 Score=100.55 Aligned_cols=59 Identities=27% Similarity=0.743 Sum_probs=47.0
Q ss_pred CCCcccccCcccccCC---ccceeecCCCccccHhhHHHHhcCCCcccccccccccccCCCC
Q 045853 117 NKTSTCVICLEEFRDG---DECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAWPSF 175 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~---~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~~~~ 175 (184)
.++.+|+||++.|.+. ....+.++|||.||..||.+|++.+.+||+||+.+........
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccccc
Confidence 3456899999999763 2333445799999999999999999999999999976665443
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.49 E-value=1e-14 Score=95.86 Aligned_cols=51 Identities=27% Similarity=0.776 Sum_probs=43.2
Q ss_pred cccccCcccccCCccceee-cCCCccccHhhHHHHhcCC-CcccccccccccccCCC
Q 045853 120 STCVICLEEFRDGDECKVR-SKCNHIFHQTCMDDWLDDH-STCPLCRGRVRRIAWPS 174 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l-~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~i~~~~~~~ 174 (184)
..|+||++.|.+ ++. ++|||.||..||..|+..+ .+||+||..+....+..
T Consensus 23 ~~C~IC~~~~~~----p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~ 75 (100)
T 3lrq_A 23 FRCFICMEKLRD----ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVN 75 (100)
T ss_dssp TBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEE
T ss_pred CCCccCCccccC----ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHh
Confidence 479999999987 555 6899999999999999876 79999999997655443
No 34
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5.5e-14 Score=84.53 Aligned_cols=45 Identities=29% Similarity=0.731 Sum_probs=37.6
Q ss_pred cCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhc---CCCccccc
Q 045853 115 AVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD---DHSTCPLC 163 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~---~~~~CP~C 163 (184)
...++..|+||++.+.+ .+..+|||.||..||..|+. .+.+||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQK----PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSS----CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCC----eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34566789999999987 44447999999999999997 56689998
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.45 E-value=4e-14 Score=92.84 Aligned_cols=48 Identities=27% Similarity=0.644 Sum_probs=41.4
Q ss_pred cccccCcccccCCcccee-ecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 120 STCVICLEEFRDGDECKV-RSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~-l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
..|+||++.|.+ .+ +++|||.||..||..|+..+.+||+||+.+....
T Consensus 23 ~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 71 (99)
T 2y43_A 23 LRCGICFEYFNI----AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71 (99)
T ss_dssp TBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred CCcccCChhhCC----cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhh
Confidence 479999999987 43 3379999999999999999999999999987543
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=6.5e-14 Score=82.71 Aligned_cols=45 Identities=29% Similarity=0.909 Sum_probs=36.8
Q ss_pred cCCCCcccccCcccccCCccceeecCCCccccHhhHHHHh---cCCCccccc
Q 045853 115 AVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWL---DDHSTCPLC 163 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl---~~~~~CP~C 163 (184)
...+...|+||++.+.+ .+.++|||.||..||..|+ ..+.+||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKE----PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSS----CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCc----cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34566789999999987 3445799999999999995 466789998
No 37
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.43 E-value=2.8e-13 Score=84.72 Aligned_cols=57 Identities=18% Similarity=0.372 Sum_probs=44.0
Q ss_pred CCCCcccccCcccccCCccceeecCCCccccHhhHHHHhc-CCCcccccccccccccC
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD-DHSTCPLCRGRVRRIAW 172 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~~~ 172 (184)
..++.+|+||++.+...+....-.+|||.||..|+..|+. ....||.||+.+.....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 4566789999999865444332225999999999999985 46789999999976654
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.43 E-value=4.4e-14 Score=96.45 Aligned_cols=46 Identities=26% Similarity=0.636 Sum_probs=39.8
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCC-Cccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDH-STCPLCRGRVRR 169 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~i~~ 169 (184)
..|+||++.|.+ .+..+|||.||..||..|+..+ .+||+||+.+..
T Consensus 53 ~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFR----PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSS----EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcC----cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 479999999997 5555799999999999999844 489999999965
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.42 E-value=9.7e-14 Score=89.76 Aligned_cols=51 Identities=25% Similarity=0.597 Sum_probs=42.2
Q ss_pred ccCCCCcccccCcccccCCccceeecC-CCccccHhhHHHHhcC--CCcccccccccc
Q 045853 114 DAVNKTSTCVICLEEFRDGDECKVRSK-CNHIFHQTCMDDWLDD--HSTCPLCRGRVR 168 (184)
Q Consensus 114 ~~~~~~~~C~ICl~~~~~~~~~~~l~~-C~H~FH~~Ci~~Wl~~--~~~CP~CR~~i~ 168 (184)
+...++..|+||++.|.+ .+..+ |||.||..||..|+.. +..||+||+.+.
T Consensus 8 ~~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCTTTEETTTTEECSS----CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred ccCCcCCCCCCCChhhcC----ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 345566789999999987 55557 9999999999999963 468999999873
No 40
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.41 E-value=9.7e-14 Score=92.46 Aligned_cols=49 Identities=31% Similarity=0.716 Sum_probs=41.8
Q ss_pred CCcccccCcccccCCccceee-cCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 118 KTSTCVICLEEFRDGDECKVR-SKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l-~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
++..|+||++.+.+ .+. .+|||.||..||..|+..+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFID----ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSS----EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhC----cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 34579999999987 443 37999999999999999889999999998653
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.39 E-value=6.7e-14 Score=96.29 Aligned_cols=56 Identities=29% Similarity=0.781 Sum_probs=45.4
Q ss_pred CCCcccccCcccccCC---ccceeecCCCccccHhhHHHHhcCCCcccccccccccccC
Q 045853 117 NKTSTCVICLEEFRDG---DECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAW 172 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~---~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~ 172 (184)
.+..+|+||++.+.+. ....+.++|||.||..||++|++.+.+||+||+.+....+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence 4556899999999863 2233455799999999999999999999999999976653
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.37 E-value=3.1e-13 Score=90.45 Aligned_cols=49 Identities=39% Similarity=0.915 Sum_probs=40.7
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcCC---CcccccccccccccCC
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDH---STCPLCRGRVRRIAWP 173 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~i~~~~~~ 173 (184)
.|+||++.+.+ .+..+|||.||..||..|+..+ .+||+||..+....+.
T Consensus 23 ~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 23 ECPICLELIKE----PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp SCSSSCCCCSS----CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB
T ss_pred CCcccChhhcC----eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcC
Confidence 79999999977 4444799999999999999865 3899999998765543
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.34 E-value=3e-13 Score=91.47 Aligned_cols=52 Identities=25% Similarity=0.592 Sum_probs=42.9
Q ss_pred CCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCC-ccccccccccccc
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHS-TCPLCRGRVRRIA 171 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~i~~~~ 171 (184)
..+...|+||++.+.+ .+..+|||.||..||..|+..+. +||+||..+....
T Consensus 15 ~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 15 LESKYECPICLMALRE----AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp CCGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcCChhhcC----eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 4455689999999987 44457999999999999998654 9999999987543
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.34 E-value=5e-13 Score=95.57 Aligned_cols=48 Identities=27% Similarity=0.684 Sum_probs=40.0
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHHhcC-CCccccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD-HSTCPLCRGRVRR 169 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~ 169 (184)
...|+||++.|.+ . ..+++|||.||..||..|+.. +..||+||..+..
T Consensus 54 ~~~C~IC~~~~~~--p-~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKN--T-MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSS--E-EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhC--c-CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3479999999987 2 233379999999999999986 7889999999853
No 45
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.34 E-value=3e-13 Score=81.52 Aligned_cols=48 Identities=25% Similarity=0.565 Sum_probs=40.2
Q ss_pred CCcccccCcccccCCccceeec--CCCcc-ccHhhHHHHhcCCCccccccccccc
Q 045853 118 KTSTCVICLEEFRDGDECKVRS--KCNHI-FHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~--~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
++.+|.||++...+ .++. +|||. |+..|+..|+..+..||+||+++..
T Consensus 7 ~~~~C~IC~~~~~~----~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKN----GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSC----EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCC----EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 34579999999877 4433 69999 8999999999988899999999853
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.33 E-value=8.1e-13 Score=92.96 Aligned_cols=48 Identities=25% Similarity=0.600 Sum_probs=41.1
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHHhcCCC-cccccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHS-TCPLCRGRVRRI 170 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~i~~~ 170 (184)
...|+||++.|.+ .+.++|||.||..||..|+.... +||+||..+...
T Consensus 78 ~~~C~IC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQ----PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSS----EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcC----CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3579999999987 55567999999999999998654 899999999765
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.32 E-value=7.2e-13 Score=89.29 Aligned_cols=50 Identities=30% Similarity=0.614 Sum_probs=42.5
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHHhcC-CCcccccccccccccC
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD-HSTCPLCRGRVRRIAW 172 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~~~ 172 (184)
...|+||++.+.+ .+..+|||.||..||..|+.. +.+||+||..+....+
T Consensus 23 ~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 23 SISCQICEHILAD----PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HTBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCcHhcC----cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 3479999999987 554579999999999999985 7799999999876554
No 48
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.32 E-value=3.8e-13 Score=93.69 Aligned_cols=49 Identities=18% Similarity=0.510 Sum_probs=41.2
Q ss_pred CCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCC-Ccccccccccc
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDH-STCPLCRGRVR 168 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~i~ 168 (184)
..+...|+||++.+.+ .+..+|||.||..||..|+... .+||+||.++.
T Consensus 28 l~~~~~C~IC~~~~~~----pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 28 LEAKYLCSACRNVLRR----PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CCGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CCcCcCCCCCChhhcC----cEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 4555689999999988 5555799999999999999855 48999999864
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.32 E-value=1.6e-13 Score=92.38 Aligned_cols=47 Identities=32% Similarity=0.781 Sum_probs=40.1
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHHhcC-CCccccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD-HSTCPLCRGRVRR 169 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~ 169 (184)
+..|+||++.+.+ .+.++|||.||..||..|+.. +.+||+||+.+..
T Consensus 15 ~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVE----PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSS----CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCc----eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4579999999987 444479999999999999975 6789999999864
No 50
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.30 E-value=6.1e-13 Score=79.89 Aligned_cols=49 Identities=20% Similarity=0.589 Sum_probs=39.4
Q ss_pred CcccccCcccccCCccceeecCCCcc-ccHhhHHHHhcCCCccccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHI-FHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
..+|.||++...+. +.+..+|||. |+..|+..|...+..||+||+++..
T Consensus 7 ~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPRDG--NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBSCE--EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CCCCcccCCcCCCe--EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 45799999987761 1222369998 9999999999888899999999853
No 51
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.29 E-value=2.6e-12 Score=81.74 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=45.3
Q ss_pred CCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
..+...|+||++-|.+ ++..+|||.|+..||..|+..+.+||+||..+....
T Consensus 11 ~p~~~~CpI~~~~m~d----PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTD----PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESM 62 (85)
T ss_dssp CCTTTBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CchheECcccCchhcC----CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence 3456789999999999 777789999999999999998899999999886543
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.29 E-value=1.6e-12 Score=103.61 Aligned_cols=49 Identities=27% Similarity=0.781 Sum_probs=42.6
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHHhc-CCCccccccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD-DHSTCPLCRGRVRRIA 171 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~~ 171 (184)
..+|+||++.+.+ .+..+|||.||..|+..|+. .+.+||+||+.+....
T Consensus 332 ~~~C~ICle~~~~----pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKD----VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCC----EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCC----eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 3589999999977 55557999999999999998 7889999999987654
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.27 E-value=4.2e-12 Score=83.20 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=45.2
Q ss_pred CCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
..+...|+||++-|.+ ++..+|||.|+..||..|+..+.+||+||.++....
T Consensus 26 ~p~~~~CpI~~~~m~d----PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD----PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp CSTTTBCTTTCSBCSS----EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred CcHhhCCcCccCcccC----CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 3456789999999999 776679999999999999998899999999986543
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.27 E-value=9.4e-13 Score=77.20 Aligned_cols=46 Identities=20% Similarity=0.426 Sum_probs=37.7
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
.+...|+||++.|.+ .+.++|||.||..|+..| ...||+||+.+..
T Consensus 4 ~~~~~C~IC~~~~~~----p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC----PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBC----CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCC----eEEcCCCCcccHHHHccC---CCCCCcCCcEeec
Confidence 445679999999987 444569999999999884 5689999998853
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.26 E-value=6.5e-12 Score=81.98 Aligned_cols=52 Identities=13% Similarity=0.007 Sum_probs=45.3
Q ss_pred CCCCcccccCcccccCCccceeecCCC-ccccHhhHHHHhcCCCccccccccccccc
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCN-HIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
..++..|+||++-|.+ ++..+|| |.|+..||..|+..+.+||+||+++....
T Consensus 19 ~p~~~~CpI~~~~m~d----PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCD----PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp CCTTTBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred CcHhcCCcCccccccC----CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 3456689999999999 7777899 99999999999998899999999986543
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=1.8e-12 Score=87.50 Aligned_cols=45 Identities=29% Similarity=0.690 Sum_probs=38.8
Q ss_pred cccccCcccccCCccceeec-CCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRS-KCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~-~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
..|+||++.|.+ .+.+ +|||.||..||..|+. ..||+||..+...
T Consensus 23 ~~C~IC~~~~~~----pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 23 LRCSRCTNILRE----PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp TSCSSSCSCCSS----CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred CCCCCCChHhhC----ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 479999999987 5544 7999999999999988 7899999998543
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.21 E-value=1.7e-12 Score=80.45 Aligned_cols=42 Identities=24% Similarity=0.626 Sum_probs=36.7
Q ss_pred cccccCcccccCCccceeecCCCcc-ccHhhHHHHhcCCCccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHI-FHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
..|+||++.+.+ .++.+|||. ||..|+..| ..||+||+.+..
T Consensus 25 ~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRNIA----IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp TBCTTTSSSBCC----EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCC----EEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 379999999887 555579999 999999999 789999999864
No 58
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.19 E-value=3.5e-12 Score=99.15 Aligned_cols=52 Identities=29% Similarity=0.786 Sum_probs=41.7
Q ss_pred CCCcccccCcccccCCccce----eecCCCccccHhhHHHHhcCC-----------Ccccccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECK----VRSKCNHIFHQTCMDDWLDDH-----------STCPLCRGRVR 168 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~----~l~~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR~~i~ 168 (184)
....+|+||++.+.+++.++ ..++|||.||..|+.+||+.. .+||+||++|.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45668999999999855544 234799999999999999732 46999999885
No 59
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.9e-11 Score=74.42 Aligned_cols=48 Identities=25% Similarity=0.630 Sum_probs=39.2
Q ss_pred ccCCCCcccccCcccccCCccceeecCCCcc-ccHhhHHHHhcCCCccccccccccc
Q 045853 114 DAVNKTSTCVICLEEFRDGDECKVRSKCNHI-FHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 114 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
....+...|.||++...+ .++.||||. |+..|+.. ...||+||+.+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVN----WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSCCCSSCCSSSSSSCCC----CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred ccCCCCCCCCCcCcCCCC----EEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 344556789999999877 666679999 99999984 4789999999864
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.09 E-value=3e-11 Score=86.64 Aligned_cols=52 Identities=25% Similarity=0.588 Sum_probs=42.8
Q ss_pred CCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCC-Cccccccccccccc
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDH-STCPLCRGRVRRIA 171 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~i~~~~ 171 (184)
..+...|+||++.+.+ ++..+|||.||..||..|+... .+||+||..+....
T Consensus 15 ~~~~~~C~IC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 15 LESKYECPICLMALRE----AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp CCGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCChhhcC----cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 4455689999999988 5555799999999999999753 49999999987643
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=5.4e-11 Score=73.82 Aligned_cols=42 Identities=24% Similarity=0.626 Sum_probs=35.3
Q ss_pred cccccCcccccCCccceeecCCCcc-ccHhhHHHHhcCCCccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHI-FHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
.+|+||++.+.+ .++.+|||. ||..|+... ..||+||+++..
T Consensus 26 ~~C~IC~~~~~~----~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIA----IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCC----BCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCC
T ss_pred CCCCcCCCCCCC----EEEecCCCHHHHHHHhhCC----CCCccCCceecC
Confidence 379999999877 555579999 999999653 789999999864
No 62
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.03 E-value=2.1e-10 Score=88.14 Aligned_cols=53 Identities=11% Similarity=0.184 Sum_probs=44.3
Q ss_pred cCCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcC-CCccccccccccccc
Q 045853 115 AVNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD-HSTCPLCRGRVRRIA 171 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~~ 171 (184)
...+...|+||++-|.+ ++..+|||+|+..||..|+.. ..+||+||.++....
T Consensus 204 ~~~~~~~c~i~~~~~~d----Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 204 DIPDYLCGKISFELMRE----PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp CCCSTTBCTTTCSBCSS----EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred CCCcccCCcCcCCHhcC----CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 34456789999999999 777789999999999999974 455999999986543
No 63
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.02 E-value=2e-10 Score=67.96 Aligned_cols=48 Identities=31% Similarity=0.821 Sum_probs=36.5
Q ss_pred CCCcccccCcccccCCccceeecCCC--c---cccHhhHHHHhc--CCCcccccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCN--H---IFHQTCMDDWLD--DHSTCPLCRGRVR 168 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~--H---~FH~~Ci~~Wl~--~~~~CP~CR~~i~ 168 (184)
++...|.||+++. ++.+ ++ ||. | .||..|+.+|+. ++.+||+||..+.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~-PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FR-ACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CC-SCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce-ec-CcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3456899999983 3333 34 464 4 899999999996 4788999999874
No 64
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=1e-10 Score=75.69 Aligned_cols=49 Identities=24% Similarity=0.641 Sum_probs=40.0
Q ss_pred CCCcccccCcccccCCccceeec-CCCccccHhhHHHHhcCC------Ccccc--cccc-ccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRS-KCNHIFHQTCMDDWLDDH------STCPL--CRGR-VRR 169 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~-~C~H~FH~~Ci~~Wl~~~------~~CP~--CR~~-i~~ 169 (184)
.+...|+||++.|.+ ++.. .|||+|+..||..|+..+ .+||+ |+.. +..
T Consensus 5 ~~~~~CPI~~~~~~d----PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK----PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBCSS----EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchhcC----CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 344679999999998 7666 499999999999999753 58999 9866 543
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.01 E-value=4.4e-11 Score=74.94 Aligned_cols=43 Identities=30% Similarity=0.802 Sum_probs=36.6
Q ss_pred cccccCcccccCCccceeecCCCcc-ccHhhHHHHhcCCCcccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHI-FHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
..|.||++.+.+ .++.+|||. |+..|+..| ..||+||+.+...
T Consensus 19 ~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 19 MLCMVCCEEEIN----STFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp TBCTTTSSSBCC----EEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CEeEEeCcccCc----EEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 379999999887 555679999 999999987 3899999998654
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.98 E-value=6e-10 Score=80.03 Aligned_cols=52 Identities=12% Similarity=0.174 Sum_probs=43.8
Q ss_pred CCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcC-CCccccccccccccc
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD-HSTCPLCRGRVRRIA 171 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~~ 171 (184)
..+...|+||++-|.+ ++..+|||.|+..||..|+.. ..+||+||.++....
T Consensus 103 ip~~f~CPI~~elm~D----PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 103 IPDYLCGKISFELMRE----PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ 155 (179)
T ss_dssp CCGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CcHhhcccCccccCCC----CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence 4456789999999998 777789999999999999975 357999999886543
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=4e-10 Score=72.91 Aligned_cols=51 Identities=24% Similarity=0.667 Sum_probs=40.4
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHHhcC--------CCcccc--cccc--cccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD--------HSTCPL--CRGR--VRRI 170 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~--------~~~CP~--CR~~--i~~~ 170 (184)
..+|+||++++...+.+... +|||.||..|+..++.. ...||. ||.. +.+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~-~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIA-QCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEET-TTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CcCCcccCcccccccceEcC-CCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 45799999999876655544 59999999999999972 247999 9998 6443
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.81 E-value=7.1e-10 Score=87.69 Aligned_cols=44 Identities=30% Similarity=0.789 Sum_probs=38.0
Q ss_pred CCcccccCcccccCCccceeecCCCcc-ccHhhHHHHhcCCCccccccccccc
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHI-FHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
++..|+||++.+.+ .++.+|||. ||..|+..| ..||+||.++..
T Consensus 294 ~~~~C~IC~~~~~~----~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS----VVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC----EEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc----eEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 45689999999987 665579999 999999998 689999999864
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.80 E-value=1.6e-09 Score=64.26 Aligned_cols=50 Identities=20% Similarity=0.293 Sum_probs=43.3
Q ss_pred cccccCcccccCCccceeec-CCCccccHhhHHHHhcCCCcccccccccccccCC
Q 045853 120 STCVICLEEFRDGDECKVRS-KCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAWP 173 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~-~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~~ 173 (184)
..|+||++-+.+ .+.. +|||+|...||.+|+..+.+||+.++++...++.
T Consensus 4 ~~CpIs~~~m~d----PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 4 MLCAISGKVPRR----PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV 54 (61)
T ss_dssp CCCTTTCSCCSS----EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCE
T ss_pred EEecCCCCCCCC----CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcE
Confidence 369999999997 5555 7999999999999999888899999999766643
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.79 E-value=2.4e-09 Score=80.71 Aligned_cols=50 Identities=26% Similarity=0.573 Sum_probs=41.1
Q ss_pred CCcccccCcccccCCccceee-cCCCccccHhhHHHHhcCC--Ccccc--ccccccccc
Q 045853 118 KTSTCVICLEEFRDGDECKVR-SKCNHIFHQTCMDDWLDDH--STCPL--CRGRVRRIA 171 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l-~~C~H~FH~~Ci~~Wl~~~--~~CP~--CR~~i~~~~ 171 (184)
....|+||++.|.+ ++. ..|||.|+..||..|+..+ .+||+ ||+.+....
T Consensus 180 ~el~CPIcl~~f~D----PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 180 IELTCPITCKPYEA----PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp CCSBCTTTSSBCSS----EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred eeeECcCccCcccC----CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 34479999999988 664 3799999999999999854 57999 999886544
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.53 E-value=5e-08 Score=62.38 Aligned_cols=48 Identities=25% Similarity=0.484 Sum_probs=38.0
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhc-CCCccccccccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD-DHSTCPLCRGRVRRIA 171 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~~ 171 (184)
-|.+|--.+.. ..|.. ||+|+|+.+|+..|.+ ...+||.||.++....
T Consensus 3 fC~~C~~Pi~i--ygRmI-PCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMI-PCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSE--EEEEE-TTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEE--Eeeec-cccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 47777766654 34666 5999999999999985 5788999999987654
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.39 E-value=2.5e-07 Score=69.49 Aligned_cols=50 Identities=20% Similarity=0.554 Sum_probs=40.3
Q ss_pred CCcccccCcccccCCccceeecCCCccccHhhHHHHhcCC--Ccccccccccccc
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDH--STCPLCRGRVRRI 170 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~i~~~ 170 (184)
...+|.||.+-...+.. .+.|+|.||..|+..|++.+ .+||.|+......
T Consensus 179 ~i~~C~iC~~iv~~g~~---C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCEE---CSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCcc---cCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 35689999999998644 33599999999999999854 4899999976443
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.10 E-value=0.00067 Score=42.62 Aligned_cols=48 Identities=25% Similarity=0.535 Sum_probs=39.7
Q ss_pred cCCCCcccccCcccccCCccceeecCCC-ccccHhhHHHHhcCCCcccccccccc
Q 045853 115 AVNKTSTCVICLEEFRDGDECKVRSKCN-HIFHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
....-..|-.|+-+... .+. |. |.+|..|+...|.....||+|+.++.
T Consensus 24 s~~G~~nCKsCWf~~k~----LV~--C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 24 THLGPQFCKSCWFENKG----LVE--CNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp CCSCCCCCCSSCSCCSS----EEE--CSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred cccCcccChhhccccCC----eee--ecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 34445679999988876 443 65 99999999999999999999999884
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=97.04 E-value=0.00051 Score=40.85 Aligned_cols=48 Identities=23% Similarity=0.517 Sum_probs=34.6
Q ss_pred CCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCC----ccccccccc
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHS----TCPLCRGRV 167 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~i 167 (184)
......|.||-+ ++++...-.|...||..|++..+.... .||.|+...
T Consensus 9 ~~~~~~C~vC~~----~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 9 LAPGARCGVCGD----GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCTTCCCTTTSC----CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCCcCCCCC----CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 344567999974 334455556889999999998886433 599998754
No 75
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=95.38 E-value=0.0033 Score=36.99 Aligned_cols=50 Identities=20% Similarity=0.489 Sum_probs=35.1
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHHHhc-----CCCcccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD-----DHSTCPLCRGR 166 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~ 166 (184)
.+...|+||...+.+++.....-.|...||..|+..-.. ..-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 344579999998876555454556888899999865332 34569999864
No 76
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.18 E-value=0.014 Score=37.31 Aligned_cols=35 Identities=14% Similarity=0.379 Sum_probs=25.0
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHHh
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWL 154 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl 154 (184)
+..|.||.+++... .+.....|+|.|+..|+..+.
T Consensus 3 e~~C~~C~~~~~~~-av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 3 KVLCQFCDQDPAQD-AVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCBCTTCCSSSCCB-CCEEETTTTEEECHHHHHHHS
T ss_pred CCCCcCCCCCCCCC-ceEECCcCChHHhHHHCHHHh
Confidence 45799999875332 223335799999999999843
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=94.96 E-value=0.016 Score=33.62 Aligned_cols=47 Identities=21% Similarity=0.656 Sum_probs=31.7
Q ss_pred CCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcC----CCcccccccc
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD----HSTCPLCRGR 166 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 166 (184)
...+..|.+|-.. ..+...-.|...||..|+..=+.. .=.||.|+..
T Consensus 8 ~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3445679999873 334444467788999999875442 2359999763
No 78
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=94.77 E-value=0.0078 Score=37.80 Aligned_cols=55 Identities=20% Similarity=0.413 Sum_probs=36.5
Q ss_pred cCCCCcccccCcccc-cCCccceeecCCCccccHhhHHHHhc--CCCccccccccccc
Q 045853 115 AVNKTSTCVICLEEF-RDGDECKVRSKCNHIFHQTCMDDWLD--DHSTCPLCRGRVRR 169 (184)
Q Consensus 115 ~~~~~~~C~ICl~~~-~~~~~~~~l~~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~i~~ 169 (184)
...++..|.||...- .+++.+...-.|.-.||..|+..-.. ..=.||.|+.....
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 345667899999764 33445555556778899999975332 23359999876543
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=94.54 E-value=0.01 Score=35.93 Aligned_cols=51 Identities=18% Similarity=0.445 Sum_probs=34.7
Q ss_pred CCcccccCcccccCCccceeecCCCccccHhhHHHHhcC----CCccccccccccc
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD----HSTCPLCRGRVRR 169 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i~~ 169 (184)
+...|.||-.... ++.....-.|.-.||..|+..-... .-.||.|+..+..
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 3346999987754 3334444467788999999765442 3459999887643
No 80
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=94.35 E-value=0.012 Score=42.04 Aligned_cols=48 Identities=27% Similarity=0.492 Sum_probs=34.8
Q ss_pred cccccCcccccCCcc---ceeecCCCccccHhhHHHH------hc-----CCCccccccccc
Q 045853 120 STCVICLEEFRDGDE---CKVRSKCNHIFHQTCMDDW------LD-----DHSTCPLCRGRV 167 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~---~~~l~~C~H~FH~~Ci~~W------l~-----~~~~CP~CR~~i 167 (184)
..|+||-..|.+++. ....-.|...||..|+..= +. ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 469999999998763 4555568899999997431 11 146799998753
No 81
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.26 E-value=0.0063 Score=34.75 Aligned_cols=46 Identities=22% Similarity=0.644 Sum_probs=30.6
Q ss_pred CCCCcccccCcccccCCccceeecCCCccccHhhHHHHhcC----CCccccccc
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD----HSTCPLCRG 165 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 165 (184)
...+..|.+|-.. ..+...-.|...||..|+..=+.. .=.||.|+.
T Consensus 6 ~~~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3445679999874 234444567789999999865442 224888864
No 82
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=93.91 E-value=0.089 Score=32.32 Aligned_cols=36 Identities=19% Similarity=0.517 Sum_probs=23.7
Q ss_pred CCCCcccccCcccccCCccceeecCCCccccHhhHHHH
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDW 153 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~W 153 (184)
...+..|.||-. +..++..+ ..-|+-+||..|+.+-
T Consensus 12 ~~~D~~C~VC~~-~t~~~l~p-CRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEV-WTAESLFP-CRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCC-CCSSCCSS-CSSSSSCCCHHHHHHH
T ss_pred CCCCcccCcccc-ccccceec-cccccccccHhhcccc
Confidence 345668999852 33333322 2237899999999997
No 83
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=93.75 E-value=0.083 Score=32.23 Aligned_cols=51 Identities=20% Similarity=0.407 Sum_probs=33.9
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHHHhc-----CCCcccccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD-----DHSTCPLCRGRVR 168 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~i~ 168 (184)
.+...| ||-..+.++......-.|...||..|+.---. ..-.||.|+..-.
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 334456 99988865444455556888999999853221 3456999987653
No 84
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=93.56 E-value=0.018 Score=33.45 Aligned_cols=46 Identities=22% Similarity=0.551 Sum_probs=30.5
Q ss_pred CCcccccCcccccCCccceeecCCCccccHhhHHHHhcC----CCccccccccc
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD----HSTCPLCRGRV 167 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i 167 (184)
.+..|.+|-+. ..+...-.|...||..|+..-+.. .=.||.|+...
T Consensus 8 ~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 34579999852 333444467788999999864442 22499997654
No 85
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=92.81 E-value=0.02 Score=41.71 Aligned_cols=46 Identities=26% Similarity=0.543 Sum_probs=32.1
Q ss_pred CCcccccCcccccCCccceeecCCCccccHhhHHHHhcCC----Cccccccccc
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDH----STCPLCRGRV 167 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~i 167 (184)
.+..|.+|-.. ..+...-.|...||..|+.+-+... =.||.|+..-
T Consensus 6 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 34569999743 3345555678899999998766532 3599998754
No 86
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=92.58 E-value=0.043 Score=32.86 Aligned_cols=51 Identities=20% Similarity=0.440 Sum_probs=34.1
Q ss_pred CCCCcccccCcccc-cCCccceeecCCCccccHhhHHHHhc--CCCcccccccc
Q 045853 116 VNKTSTCVICLEEF-RDGDECKVRSKCNHIFHQTCMDDWLD--DHSTCPLCRGR 166 (184)
Q Consensus 116 ~~~~~~C~ICl~~~-~~~~~~~~l~~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~ 166 (184)
...+..|.||...- .+++.+...-.|.-.||..|+..-.. ..=.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 44556799998764 34455555557888999999975322 22348888764
No 87
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=92.35 E-value=0.094 Score=30.78 Aligned_cols=35 Identities=26% Similarity=0.664 Sum_probs=26.2
Q ss_pred CCCcccccCcccccCCccceeec-CCCccccHhhHH
Q 045853 117 NKTSTCVICLEEFRDGDECKVRS-KCNHIFHQTCMD 151 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~-~C~H~FH~~Ci~ 151 (184)
.....|.+|...+.+++.....- .|.-.||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 34457999999998877666665 688889999974
No 88
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=92.05 E-value=0.032 Score=39.82 Aligned_cols=46 Identities=26% Similarity=0.619 Sum_probs=32.0
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHHhcC----CCcccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD----HSTCPLCRGRVR 168 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i~ 168 (184)
+..|.+|... ..+...-.|...||..|+..-+.. .=.||.|+..-.
T Consensus 4 ~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 4 EDWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CSSCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCccccCCCC----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 3469999843 334555567789999998776653 235999987543
No 89
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=91.53 E-value=0.079 Score=29.31 Aligned_cols=44 Identities=30% Similarity=0.699 Sum_probs=28.8
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcC----CCccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD----HSTCPLCRG 165 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 165 (184)
.|.||...-.. +.+...-.|...||..|++.=+.. .=.||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48888876433 344445567889999999754432 224888864
No 90
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=91.51 E-value=0.042 Score=36.01 Aligned_cols=45 Identities=29% Similarity=0.628 Sum_probs=30.9
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcC----CCccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD----HSTCPLCRG 165 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 165 (184)
.|.+|...-.+++.+...-.|...||..|++.-+.. .=.||.||.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 588888754444455555578899999999765542 225999875
No 91
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=91.49 E-value=0.026 Score=32.57 Aligned_cols=46 Identities=22% Similarity=0.651 Sum_probs=31.5
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHHhcC----CCcccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD----HSTCPLCRGRVR 168 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i~ 168 (184)
+..|.+|... ..+...-.|...||..|+..=+.. .=.||.|+....
T Consensus 5 ~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 5 EDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CSSCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 4579999874 234445567889999999864442 234999977653
No 92
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=91.27 E-value=0.045 Score=32.23 Aligned_cols=46 Identities=22% Similarity=0.551 Sum_probs=31.3
Q ss_pred CCcccccCcccccCCccceeecCCCccccHhhHHHHhcC----CCccccccccc
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD----HSTCPLCRGRV 167 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i 167 (184)
.+..|.||-+. ..+...-.|...||..|+..=+.. .=.||.|+..-
T Consensus 7 ~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 7 NEDECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp CCCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 44579999863 334445567789999999864442 22499997644
No 93
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=91.12 E-value=0.11 Score=31.47 Aligned_cols=46 Identities=22% Similarity=0.460 Sum_probs=30.3
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHH---------hcCCCccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDW---------LDDHSTCPLCRGRV 167 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~W---------l~~~~~CP~CR~~i 167 (184)
..| ||-..+..+. ....-.|...||..|+..- ....-.||.|+..-
T Consensus 17 ~~C-~C~~~~~~~~-MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 17 LYC-ICRQPHNNRF-MICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCS-TTCCCCCSSC-EEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CEE-ECCCccCCCC-EEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 456 8988776433 3334468889999998521 12466799998754
No 94
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=90.77 E-value=0.12 Score=45.87 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=43.5
Q ss_pred CCCcccccCcccccCCccceeecCCC-ccccHhhHHHHhcCCCccccccccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCN-HIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
-+...|+|-++-|.+ ++..+-| +.|-...|.+|+..+.+||+=|+++....
T Consensus 889 P~~F~cPIs~~lM~D----PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD----PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED 940 (968)
T ss_dssp CGGGBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred cHHhCCcchhhHHhC----CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence 445579999999999 7777787 58999999999999999999999886544
No 95
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=90.71 E-value=0.055 Score=30.23 Aligned_cols=44 Identities=20% Similarity=0.434 Sum_probs=29.7
Q ss_pred ccccCcccccCCccceeec-CCCccccHhhHHHHh----cCCCcccccc
Q 045853 121 TCVICLEEFRDGDECKVRS-KCNHIFHQTCMDDWL----DDHSTCPLCR 164 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~-~C~H~FH~~Ci~~Wl----~~~~~CP~CR 164 (184)
.|.+|...+.+++.....- .|.-.||..|+.--. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4789988886655545544 488889999975321 2456688885
No 96
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.53 E-value=0.073 Score=33.56 Aligned_cols=50 Identities=22% Similarity=0.410 Sum_probs=33.4
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHHHhcC----CCccccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD----HSTCPLCRGRV 167 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i 167 (184)
.+...|.||...-.. +.+...-.|...||..|+..=+.. .=.||.|+..-
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCcc
Confidence 445579999877532 344555568889999999744432 22499998753
No 97
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=90.26 E-value=0.42 Score=31.10 Aligned_cols=34 Identities=21% Similarity=0.513 Sum_probs=25.0
Q ss_pred CCcccccCcccc-----cCCccceeecCCCccccHhhHH
Q 045853 118 KTSTCVICLEEF-----RDGDECKVRSKCNHIFHQTCMD 151 (184)
Q Consensus 118 ~~~~C~ICl~~~-----~~~~~~~~l~~C~H~FH~~Ci~ 151 (184)
....|.+|+..- ..++++...-.|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 345799998763 2334566666899999999995
No 98
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=90.07 E-value=0.088 Score=34.28 Aligned_cols=38 Identities=16% Similarity=0.354 Sum_probs=26.5
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHHHhc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD 155 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~ 155 (184)
..+..|.||.+.=.. +.+.....|+..||..|+...+.
T Consensus 5 ~~~~~C~~C~~~g~~-~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDL-LDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCT-TTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCC-cCCeECCCCCCCcChHHhCCccc
Confidence 345679999876332 22344457889999999988765
No 99
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=89.89 E-value=0.075 Score=37.47 Aligned_cols=48 Identities=21% Similarity=0.486 Sum_probs=33.5
Q ss_pred CCcccccCcccccCCccceeecCCCccccHhhHHHHh-----cCCCcccccccc
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWL-----DDHSTCPLCRGR 166 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~ 166 (184)
+...| +|...+.++......-.|...||..|+..-. ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 44568 9998876555555555788899999985321 234569999874
No 100
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.83 E-value=0.062 Score=32.20 Aligned_cols=49 Identities=18% Similarity=0.284 Sum_probs=32.4
Q ss_pred CCcccccCcccccCCccceeecCCCccccHhhHHHHh----cCCCccccccccc
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWL----DDHSTCPLCRGRV 167 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl----~~~~~CP~CR~~i 167 (184)
+...| ||-..+.+++.....-.|...||..|+..-- ...-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 33468 7988766554444455688889999986432 1345699998643
No 101
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=89.08 E-value=0.18 Score=29.42 Aligned_cols=51 Identities=27% Similarity=0.638 Sum_probs=34.1
Q ss_pred CCCcccccCcccccC-CccceeecCCCccccHhhHHHHhc-------CCCccccccccc
Q 045853 117 NKTSTCVICLEEFRD-GDECKVRSKCNHIFHQTCMDDWLD-------DHSTCPLCRGRV 167 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~-~~~~~~l~~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~i 167 (184)
.++..|.+|...... ++.+...-.|.-.||..|+..=+. ..=.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 345679999987543 344555557788999999875331 233599997654
No 102
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=88.62 E-value=0.17 Score=32.24 Aligned_cols=46 Identities=28% Similarity=0.466 Sum_probs=30.2
Q ss_pred CCcccccCcccccCCccceeecCCCccccHhhHHHHhc---CCCccccccc
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD---DHSTCPLCRG 165 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~---~~~~CP~CR~ 165 (184)
+...| ||-.....+ .+...-.|.-.||..|+..=.. ..-.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34567 887766544 3344557888999999865322 2346999974
No 103
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.57 E-value=0.32 Score=30.29 Aligned_cols=46 Identities=26% Similarity=0.653 Sum_probs=31.2
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHHHhcC----CCcccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD----HSTCPLCRGR 166 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 166 (184)
..+..|.+|... + .+...-.|.-.||..|+.+=+.. .-.||.|+..
T Consensus 23 ~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 344579999964 2 34444466778999999765543 2249999864
No 104
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=88.19 E-value=0.26 Score=31.81 Aligned_cols=49 Identities=22% Similarity=0.476 Sum_probs=34.5
Q ss_pred cccccCcccccCCccceeec-CCCccccHhhHHHHh----------cCCCcccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRS-KCNHIFHQTCMDDWL----------DDHSTCPLCRGRVR 168 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~-~C~H~FH~~Ci~~Wl----------~~~~~CP~CR~~i~ 168 (184)
..|.||...+.+++.....- .|.-.||..|+.-=- ...-.||.|+..-.
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 46999999997766655553 588889999975221 02345999987653
No 105
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=88.17 E-value=0.088 Score=31.38 Aligned_cols=44 Identities=30% Similarity=0.643 Sum_probs=26.7
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcC-----CCccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD-----HSTCPLCRG 165 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 165 (184)
.|.+|...-. ++.+...-.|...||..|++.=+.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 4667765422 2333444467789999999854431 225888865
No 106
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=87.96 E-value=0.11 Score=37.29 Aligned_cols=44 Identities=25% Similarity=0.632 Sum_probs=30.0
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhc----CCCccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD----DHSTCPLCRGRV 167 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~----~~~~CP~CR~~i 167 (184)
..|.+|.+. + .+...-.|...||..|+..=+. ..-.||.|+..-
T Consensus 3 ~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCC---S-SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CcCccCCCC---C-ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 469999844 2 3344456778999999975443 223599998764
No 107
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.94 E-value=0.075 Score=32.34 Aligned_cols=44 Identities=25% Similarity=0.605 Sum_probs=28.1
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcC-----CCccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD-----HSTCPLCRG 165 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 165 (184)
.|.||...-. ++.+...-.|...||..|++.=+.. .=.||.|+.
T Consensus 28 ~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 6888886432 3344444467789999999854331 225888864
No 108
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=87.79 E-value=0.4 Score=29.85 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=37.8
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHHHhc-------CCCccccccccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD-------DHSTCPLCRGRVRRIA 171 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~i~~~~ 171 (184)
.+...|.+|...|..-..--....||++|+..|...... ..+.|-.|-..+....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~~ 68 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRGS 68 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHCC
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhcc
Confidence 444589999999986433233446999999999765431 2356888887776443
No 109
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=87.68 E-value=0.12 Score=30.55 Aligned_cols=47 Identities=23% Similarity=0.566 Sum_probs=30.1
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHHHhc---CCCccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD---DHSTCPLCRG 165 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~---~~~~CP~CR~ 165 (184)
.+...| ||-..+. ++.....-.|...||..|+..--. ..-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 344568 9987765 333344446888999999864321 2345888864
No 110
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=87.31 E-value=0.29 Score=26.25 Aligned_cols=6 Identities=33% Similarity=1.104 Sum_probs=3.1
Q ss_pred CCCCcc
Q 045853 9 TCPNDE 14 (184)
Q Consensus 9 ~~~~~~ 14 (184)
.||.+.
T Consensus 2 gCp~~~ 7 (44)
T 2ks1_B 2 GCPTNG 7 (44)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 466543
No 111
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=87.28 E-value=0.52 Score=28.02 Aligned_cols=46 Identities=26% Similarity=0.629 Sum_probs=28.1
Q ss_pred CCCcccccCcccccCCccceeecC--CC-ccccHhhHHHHhcC----CCccccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSK--CN-HIFHQTCMDDWLDD----HSTCPLCRGRV 167 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~~i 167 (184)
.+..-| ||-.... ++ ....-. |. ..||..|+. +.. +-.||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 344567 8987543 32 233334 55 689999997 432 33599997654
No 112
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=87.04 E-value=0.39 Score=31.07 Aligned_cols=46 Identities=22% Similarity=0.525 Sum_probs=28.3
Q ss_pred CCCCcccccCcccccCCccceeec--CCCccccHhhHHHHhcCC----Cccccccccc
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRS--KCNHIFHQTCMDDWLDDH----STCPLCRGRV 167 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~--~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~i 167 (184)
...+..|.+|.+ +.++...- .|...||..|+. |... =.||.|+-.+
T Consensus 12 ~~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 12 QMHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp CSSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCCcCCC----CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 344557999983 23334332 377899999997 5422 2388775444
No 113
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=86.52 E-value=0.09 Score=32.84 Aligned_cols=52 Identities=21% Similarity=0.526 Sum_probs=35.4
Q ss_pred CCcccccCcccccC-CccceeecCCCccccHhhHHHHhc--------CCCccccccccccc
Q 045853 118 KTSTCVICLEEFRD-GDECKVRSKCNHIFHQTCMDDWLD--------DHSTCPLCRGRVRR 169 (184)
Q Consensus 118 ~~~~C~ICl~~~~~-~~~~~~l~~C~H~FH~~Ci~~Wl~--------~~~~CP~CR~~i~~ 169 (184)
.+..|.+|...-.. ++.+...-.|...||..|+..=+. ..=.||.|+.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 34579999986443 244555557788999999986543 23359999876643
No 114
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=86.46 E-value=0.57 Score=29.37 Aligned_cols=46 Identities=26% Similarity=0.629 Sum_probs=28.4
Q ss_pred CCCcccccCcccccCCccceeecC--CC-ccccHhhHHHHhcC----CCccccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSK--CN-HIFHQTCMDDWLDD----HSTCPLCRGRV 167 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~~i 167 (184)
.+..-| ||-.... ++ ....-. |. ..||..|+. +.. +-.||.|+..-
T Consensus 34 ~e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 344457 9987653 32 233334 55 689999997 332 34599998754
No 115
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=86.46 E-value=0.11 Score=34.47 Aligned_cols=48 Identities=21% Similarity=0.427 Sum_probs=33.4
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRV 167 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i 167 (184)
..|..|-..|..-..--....||.+|+..|........+.|-.|-..+
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 479999999976433334557999999999877665667788886543
No 116
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=86.37 E-value=0.2 Score=32.83 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=24.1
Q ss_pred cccccCccccc------CCccceeecCCCccccHhhHHHH
Q 045853 120 STCVICLEEFR------DGDECKVRSKCNHIFHQTCMDDW 153 (184)
Q Consensus 120 ~~C~ICl~~~~------~~~~~~~l~~C~H~FH~~Ci~~W 153 (184)
..|.+|+..-. +.+++...-.|+..||..|++..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 36999987542 23455555578999999998754
No 117
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=85.79 E-value=0.55 Score=28.00 Aligned_cols=33 Identities=21% Similarity=0.470 Sum_probs=24.6
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHH
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDD 152 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~ 152 (184)
..|.+|...|..-..--....||++|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 479999999986433333447999999999753
No 118
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=85.11 E-value=0.97 Score=27.70 Aligned_cols=54 Identities=15% Similarity=0.285 Sum_probs=36.1
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHHHhc--------CCCcccccccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD--------DHSTCPLCRGRVRRI 170 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~--------~~~~CP~CR~~i~~~ 170 (184)
.+...|.+|...|..-..--....||++|+..|...... ..+.|-.|-..+...
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~~ 80 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRSS 80 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHTS
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhhc
Confidence 344579999999986543334457999999999765431 234577776665443
No 119
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=85.06 E-value=0.61 Score=28.49 Aligned_cols=51 Identities=25% Similarity=0.517 Sum_probs=34.0
Q ss_pred CCcccccCcccccCCccceeecCCCccccHhhHHHHhc------CCCcccccccccc
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD------DHSTCPLCRGRVR 168 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~------~~~~CP~CR~~i~ 168 (184)
+...|.+|...|.....--....||++|+..|....+. ..+.|-.|-..+.
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence 34579999999986443334457999999999765431 2234777765553
No 120
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=84.96 E-value=0.3 Score=35.93 Aligned_cols=45 Identities=29% Similarity=0.626 Sum_probs=25.5
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcC-----CCcccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD-----HSTCPLCRGR 166 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~~ 166 (184)
.|.+|-..-. ++.+...-.|...||..|+++=+.. .=.||.|+.+
T Consensus 176 ~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 5778876432 2344445567889999999854432 2259999753
No 121
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=84.28 E-value=0.16 Score=30.81 Aligned_cols=45 Identities=29% Similarity=0.633 Sum_probs=26.5
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcC----C-Ccccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD----H-STCPLCRGR 166 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~-~~CP~CR~~ 166 (184)
.|.+|-..-.. +.+...-.|...||..|++.-|.. . =.||.|+.+
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 46666554322 333444467789999999865542 1 358988753
No 122
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=84.16 E-value=0.55 Score=28.41 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=30.2
Q ss_pred CCcccccCcccccCCccceeec--CCCccccHhhHHHHhc---------CCCccccccccc
Q 045853 118 KTSTCVICLEEFRDGDECKVRS--KCNHIFHQTCMDDWLD---------DHSTCPLCRGRV 167 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~--~C~H~FH~~Ci~~Wl~---------~~~~CP~CR~~i 167 (184)
....| ||-.....+ .....- .|...||..|+.---. .+-.||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 44567 788874333 223333 5888999999863221 245699998754
No 123
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=83.68 E-value=0.59 Score=29.16 Aligned_cols=51 Identities=16% Similarity=0.475 Sum_probs=35.5
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHHhc------CCCccccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD------DHSTCPLCRGRVRR 169 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~------~~~~CP~CR~~i~~ 169 (184)
...|.+|...|..-..--....||++|+..|...+.. ..+.|-.|-..+..
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~ 76 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETISK 76 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHHH
Confidence 3479999999986443344557999999999876542 23457777666643
No 124
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=83.35 E-value=0.71 Score=26.40 Aligned_cols=42 Identities=29% Similarity=0.570 Sum_probs=30.1
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLC 163 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~C 163 (184)
.|.-|...+.+.. ....+.|++.|+.+|=.---..-.+||-|
T Consensus 17 ~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 5999999986432 24467899999999953333355679988
No 125
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=83.19 E-value=0.77 Score=27.23 Aligned_cols=41 Identities=17% Similarity=0.411 Sum_probs=31.6
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
...|+-|-..+..++.+.. -+..||.+|+ +|..|+..|...
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFCL--------KCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTTC--------BCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCCC--------CCCCCCCccCCC
Confidence 3579999999887665442 5788999884 699999988654
No 126
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=83.16 E-value=0.4 Score=27.40 Aligned_cols=42 Identities=31% Similarity=0.669 Sum_probs=26.2
Q ss_pred CcccccCcccccCCccceeecC--CC-ccccHhhHHHHhcC----CCccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSK--CN-HIFHQTCMDDWLDD----HSTCPLCRG 165 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~ 165 (184)
..-| ||-.... + .....-. |. ..||..|+. +.. +-.||.|+.
T Consensus 9 ~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3456 8987642 3 3333334 55 689999997 432 335999975
No 127
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=82.73 E-value=0.64 Score=30.91 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=25.8
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHH
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDW 153 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~W 153 (184)
...|.+|...|.....--....||++|+..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 34799999999864333345579999999997544
No 128
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=82.72 E-value=0.17 Score=29.91 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=26.4
Q ss_pred cccccCcccccCCccceeec--CCCccccHhhHHHHhc--------CCCccccccc
Q 045853 120 STCVICLEEFRDGDECKVRS--KCNHIFHQTCMDDWLD--------DHSTCPLCRG 165 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~--~C~H~FH~~Ci~~Wl~--------~~~~CP~CR~ 165 (184)
..| ||-.....+.. ...- .|...||..|+.---. .+-.||.||.
T Consensus 11 v~C-~C~~~~~~g~m-I~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSM-IQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCE-EECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCE-EEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 357 78765554433 2221 3888899999842111 1346999985
No 129
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=82.30 E-value=0.43 Score=27.34 Aligned_cols=42 Identities=29% Similarity=0.661 Sum_probs=25.7
Q ss_pred CcccccCcccccCCccceeecC--CC-ccccHhhHHHHhcC----CCccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSK--CN-HIFHQTCMDDWLDD----HSTCPLCRG 165 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~ 165 (184)
..-| ||-.... + .....-. |. ..||..|+. +.. +-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3456 8987642 3 3333334 44 579999997 442 335999865
No 130
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=81.52 E-value=1.1 Score=27.08 Aligned_cols=43 Identities=23% Similarity=0.539 Sum_probs=32.3
Q ss_pred CCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
....|+-|-..+...+.+.. =+..||.+|+ +|-.|+..|....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~CF--------~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSCF--------RCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTTC--------BCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCcC--------EEcCCCCCcCCCc
Confidence 44579999999877665542 4788999994 6888988886554
No 131
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=81.05 E-value=1.1 Score=26.15 Aligned_cols=41 Identities=20% Similarity=0.433 Sum_probs=30.1
Q ss_pred cccccCcccccC--CccceeecCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 120 STCVICLEEFRD--GDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 120 ~~C~ICl~~~~~--~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
..|+-|-..+.. ++.+... -+..||.+|+ +|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~~~ 48 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISF--EERQWHNDCF--------NCKKCSLSLVGR 48 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEEC--SSCEECTTTC--------BCSSSCCBCTTS
T ss_pred CCCcCCCccccCCCCcceEEE--CCcccCcccC--------EeccCCCcCCCC
Confidence 469999999886 3343322 5788999985 799999988643
No 132
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=80.92 E-value=1.8 Score=29.38 Aligned_cols=46 Identities=20% Similarity=0.460 Sum_probs=30.9
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHHHhc-----------CCCcccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD-----------DHSTCPLCRGR 166 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-----------~~~~CP~CR~~ 166 (184)
..+..|.+|-+- .++.-.-.|-.+||..|+.+=+. ..=.||.|+..
T Consensus 61 g~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 345679999863 33344445778999999996653 23359999743
No 133
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=80.89 E-value=1.7 Score=25.62 Aligned_cols=43 Identities=19% Similarity=0.509 Sum_probs=32.4
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
...|+-|-..+..++.+... -|..||.+|+ +|-.|++++....
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~~ 53 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEGL 53 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGGGC
T ss_pred CCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCCCC
Confidence 45799999998866554433 5788999884 6889998887654
No 134
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.73 E-value=1.4 Score=26.97 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=25.1
Q ss_pred CCcccccCcccccCCccceeecCCCccccHhhHHH
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDD 152 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~ 152 (184)
+...|.+|...|..-..---...||++|+..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34579999999975433223446999999999654
No 135
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=80.54 E-value=0.77 Score=33.53 Aligned_cols=36 Identities=19% Similarity=0.414 Sum_probs=26.6
Q ss_pred CCcccccCcccccCCccceeecCCCccccHhhHHHH
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDW 153 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~W 153 (184)
++..|.+|...|.--..--....||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 357899999999754433345579999999997543
No 136
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=80.24 E-value=0.86 Score=26.59 Aligned_cols=41 Identities=22% Similarity=0.469 Sum_probs=30.5
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
..|+-|-..+...+.+... =+..||.+|+ +|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccCCC
Confidence 4699999998876544433 5778999885 688898888654
No 137
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=80.18 E-value=0.89 Score=30.62 Aligned_cols=50 Identities=18% Similarity=0.465 Sum_probs=32.7
Q ss_pred CCCcccccCccccc-CCccceeecCCCccccHhhHHHHhcC-C---Ccccccccc
Q 045853 117 NKTSTCVICLEEFR-DGDECKVRSKCNHIFHQTCMDDWLDD-H---STCPLCRGR 166 (184)
Q Consensus 117 ~~~~~C~ICl~~~~-~~~~~~~l~~C~H~FH~~Ci~~Wl~~-~---~~CP~CR~~ 166 (184)
.....|.+|...|. .+..-+....|+|.+|..|-..--.. + =.|-+|++.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 34568999999994 33444667789999999985422111 1 137788764
No 138
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=80.08 E-value=1.8 Score=26.21 Aligned_cols=35 Identities=26% Similarity=0.585 Sum_probs=26.5
Q ss_pred CCCcccccCcccccCCccceeecCC----CccccHhhHHHHhc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKC----NHIFHQTCMDDWLD 155 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C----~H~FH~~Ci~~Wl~ 155 (184)
.....|.+|.+.+++.-- .+| .|.|+..|-...++
T Consensus 13 ~a~l~CtlC~erLEdtHF----VQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHF----VQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CCSCCCSSSCSCCSSTTS----EECSSCSSCEECHHHHHHHHH
T ss_pred CCeeEeecchhhhccCce----eeCCCccCCeeeccccHHHHH
Confidence 344579999999887322 135 48999999999987
No 139
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=80.00 E-value=0.86 Score=33.49 Aligned_cols=50 Identities=18% Similarity=0.446 Sum_probs=34.1
Q ss_pred CCcccccCcccccCCccceeecCCCccccHhhHHHHhc--------CCCccccccccc
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD--------DHSTCPLCRGRV 167 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~--------~~~~CP~CR~~i 167 (184)
++..|.+|...|.--..--....||++||..|-..... ..+.|-.|-..+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l 220 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQL 220 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHH
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHh
Confidence 44689999999986443334557999999999765432 224477776554
No 140
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=79.99 E-value=1.7 Score=29.88 Aligned_cols=48 Identities=17% Similarity=0.436 Sum_probs=31.2
Q ss_pred CCcccccCcccccCC-ccceeecCCCccccHhhHHHHhcCCC--cccccccc
Q 045853 118 KTSTCVICLEEFRDG-DECKVRSKCNHIFHQTCMDDWLDDHS--TCPLCRGR 166 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~-~~~~~l~~C~H~FH~~Ci~~Wl~~~~--~CP~CR~~ 166 (184)
.+..|++|...|.-- ..-+....|+|.+|..|- .|..... .|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 456899999987532 223556689999999997 2333211 27777653
No 141
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=79.93 E-value=0.36 Score=38.85 Aligned_cols=50 Identities=18% Similarity=0.364 Sum_probs=0.0
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHHhc-------CCCcccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD-------DHSTCPLCRGRVR 168 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~i~ 168 (184)
...|.+|-..|.....-.....||++||..|...++. ..+.|-.|-..+.
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 4579999999975433234457999999999977652 2345777766553
No 142
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=79.53 E-value=0.99 Score=26.23 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045853 27 ISSVVCLILFLFYISYYLF 45 (184)
Q Consensus 27 i~~~~~li~~~~~i~~~~~ 45 (184)
+..++.++++.-+.++++.
T Consensus 14 lGg~~~lll~~glcI~ccv 32 (70)
T 2klu_A 14 LGGVAGLLLFIGLGIFFSV 32 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHhh
Confidence 3333333333333334333
No 143
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.52 E-value=1.1 Score=26.98 Aligned_cols=41 Identities=24% Similarity=0.591 Sum_probs=31.3
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
.....|+-|-..+..++.+.. =+..||.+|+ +|-.|+..|.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 344579999999887665443 4688999884 7999998885
No 144
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.82 E-value=1.7 Score=25.21 Aligned_cols=42 Identities=21% Similarity=0.450 Sum_probs=30.8
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
..|+-|-..+..++.+... -+..||.+|+ +|-.|+.+|....
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~~ 47 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEY--GGQTWHEHCF--------LCSGCEQPLGSRS 47 (72)
T ss_dssp CBCSSSCCBCCSSSCEECS--TTCCEETTTC--------BCTTTCCBTTTSC
T ss_pred CCCccCCCccccCccEEEE--CccccCcccC--------eECCCCCcCCCCc
Confidence 4799999998875443322 5788999884 6889988886543
No 145
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=77.96 E-value=0.77 Score=26.49 Aligned_cols=43 Identities=33% Similarity=0.743 Sum_probs=26.2
Q ss_pred CCcccccCcccccCCccceeecC--CC-ccccHhhHHHHhc----CCCccccccc
Q 045853 118 KTSTCVICLEEFRDGDECKVRSK--CN-HIFHQTCMDDWLD----DHSTCPLCRG 165 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~FH~~Ci~~Wl~----~~~~CP~CR~ 165 (184)
+..-| ||-.... + .....-. |. ..||..|+. +. .+-.||.|+.
T Consensus 10 e~~yC-~C~~~~~-g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-G-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCC-C-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 33456 8987632 3 3333334 44 789999997 33 2345999975
No 146
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.54 E-value=1.3 Score=25.82 Aligned_cols=40 Identities=30% Similarity=0.650 Sum_probs=28.7
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
..|+-|-..+..++.+... =+..||.+|+ +|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVA--LDRVFHVGCF--------VCSTCRAQLRG 45 (72)
T ss_dssp CCCSSSCSCCCSSSCCEEC--SSSEECTTTC--------BCSSSCCBCTT
T ss_pred CCCccCCCccCCCceEEEE--CCCeEcccCC--------cccccCCcCCc
Confidence 4699999888765443322 4678998884 68889888853
No 147
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=77.33 E-value=3.3 Score=27.65 Aligned_cols=45 Identities=20% Similarity=0.466 Sum_probs=29.7
Q ss_pred CCcccccCcccccCCccceeecCCCccccHhhHHHHh------c-----CCCcccccccc
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWL------D-----DHSTCPLCRGR 166 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl------~-----~~~~CP~CR~~ 166 (184)
.+..|.+|-+- .++.-.-.|-..||..|+.+=+ . ..=.|++|+-.
T Consensus 56 ~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 56 MDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 34569999853 3334444577899999999742 1 22359999654
No 148
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=77.11 E-value=0.72 Score=28.83 Aligned_cols=44 Identities=20% Similarity=0.451 Sum_probs=26.5
Q ss_pred CCCcccccCcccccCCccceeecCCC---ccccHhhHHHHhc----CCCcccc-ccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCN---HIFHQTCMDDWLD----DHSTCPL-CRG 165 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~---H~FH~~Ci~~Wl~----~~~~CP~-CR~ 165 (184)
.+..-| ||-.... ++ ....-.|+ ..||..|+. |. .+-.||. |+.
T Consensus 24 ~~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 344567 8987432 33 33333444 689999996 33 2345999 975
No 149
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=76.43 E-value=0.96 Score=27.06 Aligned_cols=46 Identities=20% Similarity=0.389 Sum_probs=30.8
Q ss_pred cccCcccccCCccceeecCCCccccHhhHHHHhc-----CCCccccccccc
Q 045853 122 CVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD-----DHSTCPLCRGRV 167 (184)
Q Consensus 122 C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~i 167 (184)
-.||-..+..+......-.|.-.||..|+.---. ..-.||.|+..-
T Consensus 12 yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 12 YCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred EEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 4489887764444444556888899999964322 234699998754
No 150
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=76.13 E-value=1.1 Score=26.55 Aligned_cols=38 Identities=18% Similarity=0.503 Sum_probs=21.0
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
.|+-|-..+..++.+.. -|..||.+|+ +|..|+.++..
T Consensus 2 ~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTS---LGKDWHRPCL--------KCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGGGEEEE---TTEEEETTTC--------BCTTTCCBCCT
T ss_pred cCCCCCCEEECceEEEE---CCccccCCCC--------CccccCccCCC
Confidence 36666666554443322 2566676663 46666666544
No 151
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=76.02 E-value=0.28 Score=32.06 Aligned_cols=47 Identities=21% Similarity=0.608 Sum_probs=30.3
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcC----CCcccccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDD----HSTCPLCRGRVR 168 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i~ 168 (184)
.|.||-..-.. +.+...-.|...||..|+..=+.. .=.||.|+..+.
T Consensus 60 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 60 SCILCGTSEND-DQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCTTTTCCTTT-TTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred ccCcccccCCC-CceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 47788765333 344444567889999999854432 224999977654
No 152
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.69 E-value=1.5 Score=25.94 Aligned_cols=41 Identities=22% Similarity=0.496 Sum_probs=29.5
Q ss_pred cccccCcccccC--CccceeecCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 120 STCVICLEEFRD--GDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 120 ~~C~ICl~~~~~--~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
..|+-|-..+.. +++.... -+..||.+|+ +|-.|+.+|...
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~~~ 48 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICF--QDSQWHSECF--------NCGKCSVSLVGK 48 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEE--TTEEEEGGGC--------BCTTTCCBCSSS
T ss_pred CCCccCCCcccCCCCceeEEE--CCcccCcccC--------ChhhCCCcCCCC
Confidence 469999998885 3333332 5788999994 688898888643
No 153
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=75.28 E-value=12 Score=23.13 Aligned_cols=52 Identities=21% Similarity=0.446 Sum_probs=36.0
Q ss_pred CCcccccCcccccCCc--ccee-ecCCCccccHhhHHHHhc-CCCccccccccccc
Q 045853 118 KTSTCVICLEEFRDGD--ECKV-RSKCNHIFHQTCMDDWLD-DHSTCPLCRGRVRR 169 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~--~~~~-l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~ 169 (184)
....|.||-++.-... ++.+ .-.|+--.+..|.+-=.+ .+..||-|+....+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 3457999999965322 2232 224555689999876554 68889999999863
No 154
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.71 E-value=1.6 Score=26.01 Aligned_cols=41 Identities=20% Similarity=0.360 Sum_probs=29.9
Q ss_pred CCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 118 KTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
....|+-|-..+.. +. +. --+..||.+|+ +|-.|+..|...
T Consensus 14 ~~~~C~~C~~~I~~-~~--~~-a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VF--VK-LRDRHRHPECY--------VCTDCGTNLKQK 54 (79)
T ss_dssp CCCCCSSSCCCCCS-SC--EE-CSSCEECTTTT--------SCSSSCCCHHHH
T ss_pred CCCccccCCCCccC-cE--EE-ECcceeCcCcC--------eeCCCCCCCCCC
Confidence 34579999998875 22 22 35788999995 688998888643
No 155
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=74.69 E-value=4.3 Score=22.63 Aligned_cols=15 Identities=0% Similarity=-0.037 Sum_probs=7.3
Q ss_pred chhHHHHHHHHHHHH
Q 045853 15 GLRLLVLTTPLVISS 29 (184)
Q Consensus 15 ~~~~~~~~~~~~i~~ 29 (184)
+..+|+++..++..+
T Consensus 9 ~vp~wiIi~svl~GL 23 (54)
T 2knc_A 9 AIPIWWVLVGVLGGL 23 (54)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHH
Confidence 455666544444333
No 156
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.33 E-value=1.7 Score=25.20 Aligned_cols=41 Identities=29% Similarity=0.570 Sum_probs=29.2
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
...|+-|-..+.. +.+. .-+..||.+|+ +|-.|+..|....
T Consensus 5 ~~~C~~C~~~I~~-~~~~---a~~~~~H~~CF--------~C~~C~~~L~~~~ 45 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIK---AMNNSWHPECF--------RCDLCQEVLADIG 45 (70)
T ss_dssp SSBCSSSCCBCCS-CCEE---ETTEEECTTTS--------BCSSSCCBCSSSC
T ss_pred CCcCccCCCEecc-eEEE---ECcccccccCC--------EeCCCCCcCCCCc
Confidence 3479999988874 2222 25788999885 6889998886543
No 157
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=71.55 E-value=4.3 Score=24.70 Aligned_cols=43 Identities=16% Similarity=0.411 Sum_probs=30.7
Q ss_pred CCCcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
.....|+-|-..+.. .. +. .-+..||.+|+ +|-.|+..|....
T Consensus 23 ~~~~~C~~C~~~I~~-~~--~~-a~~~~~H~~CF--------~C~~C~~~L~~~~ 65 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-AV--VK-ARDKYRHPECF--------VCADCNLNLKQKG 65 (89)
T ss_dssp CSCCBCTTTCCBCCS-CC--EE-SSSCEECTTTC--------CCSSSCCCTTTSC
T ss_pred CcCCCcccCCCEecc-cE--EE-ECCceECccCC--------EecCCCCCCCCCC
Confidence 344579999998875 22 22 36788999994 6899998886543
No 158
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=70.97 E-value=4.2 Score=23.29 Aligned_cols=42 Identities=19% Similarity=0.510 Sum_probs=32.1
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
..|+-|-..+..++.+... =|..||..|+ .|-.|++.+....
T Consensus 12 ~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~~ 53 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEGL 53 (72)
T ss_dssp CBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGGC
T ss_pred ccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCCC
Confidence 4799999999877664433 5678999985 6999999886553
No 159
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.55 E-value=1.9 Score=26.46 Aligned_cols=41 Identities=22% Similarity=0.474 Sum_probs=29.8
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
...|+-|-..+. ++.+. .-+..||.+|+ +|-.|+..|....
T Consensus 25 ~~~C~~C~~~I~-~~~v~---a~~~~~H~~CF--------~C~~C~~~L~~~~ 65 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLV---ALGKSWHPEEF--------NCAHCKNTMAYIG 65 (90)
T ss_dssp CCBBSSSCCBCC-SCEEE---ETTEEECTTTC--------BCSSSCCBCSSSC
T ss_pred CCCCccCCCEec-ceEEE---ECCccccccCC--------ccCCCCCCCCCCE
Confidence 457999999885 33222 25789999985 7999999887543
No 160
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.52 E-value=2.9 Score=24.94 Aligned_cols=41 Identities=22% Similarity=0.566 Sum_probs=30.8
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
..|+-|-..+..++.+... =+..||.+|+ +|-.|++.|...
T Consensus 16 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEY--KGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEEEC--SSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEEEE--CccccccccC--------chhhCCCccCCC
Confidence 4799999998876654322 4778999885 688998888654
No 161
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.50 E-value=3.8 Score=24.40 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=29.2
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
...|+-|-..+. ++.+. --|..||.+|+ +|-.|+.+|...
T Consensus 15 ~~~C~~C~~~I~-~~~v~---a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQPLI---FKNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SCCCC---CSSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ceEEE---ECcceeCCCCC--------EeCCCCCccCCC
Confidence 457999999888 33322 35788999884 799999888644
No 162
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=70.44 E-value=1.5 Score=21.36 Aligned_cols=27 Identities=15% Similarity=0.539 Sum_probs=19.6
Q ss_pred ccccCcccccCCccceeecCCCccccHhhH
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCM 150 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci 150 (184)
.|+.|-...-..+.+.. =|..||..|+
T Consensus 5 ~C~~C~k~Vy~~Ek~~~---~g~~~Hk~CF 31 (31)
T 1zfo_A 5 NCARCGKIVYPTEKVNC---LDKFWHKACF 31 (31)
T ss_dssp BCSSSCSBCCGGGCCCS---SSSCCCGGGC
T ss_pred cCCccCCEEecceeEEE---CCeEecccCC
Confidence 69999988776555442 4688999884
No 163
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=70.07 E-value=1.6 Score=27.61 Aligned_cols=11 Identities=27% Similarity=1.168 Sum_probs=10.4
Q ss_pred ccHhhHHHHhc
Q 045853 145 FHQTCMDDWLD 155 (184)
Q Consensus 145 FH~~Ci~~Wl~ 155 (184)
||.+|+..|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 164
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=69.96 E-value=1.6 Score=27.54 Aligned_cols=11 Identities=36% Similarity=1.132 Sum_probs=10.4
Q ss_pred ccHhhHHHHhc
Q 045853 145 FHQTCMDDWLD 155 (184)
Q Consensus 145 FH~~Ci~~Wl~ 155 (184)
||.+|+..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 165
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=69.09 E-value=1.5 Score=26.31 Aligned_cols=41 Identities=22% Similarity=0.587 Sum_probs=30.6
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
..|+.|-..+..++.+.. -+..||.+|+ +|-.|+++|....
T Consensus 8 ~~C~~C~~~I~~~~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~~ 48 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQC---DGRSFHRCCF--------LCMVCRKNLDSTT 48 (81)
T ss_dssp CBCSSSCCBCSSTTEEEE---TTEEEESSSE--------ECSSSCCEECSSC
T ss_pred CcCcCcCccccCceeEEe---CCcccccccC--------ccCCCCCCCCCCC
Confidence 469999999876665432 5788999884 6888988886543
No 166
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.96 E-value=3.1 Score=23.95 Aligned_cols=39 Identities=23% Similarity=0.594 Sum_probs=28.3
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
..|+-|-..+.. +.+. .-+..||.+|+ +|-.|+++|...
T Consensus 6 ~~C~~C~~~I~~-~~~~---a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8z_A 6 SGCVQCKKPITT-GGVT---YREQPWHKECF--------VCTACRKQLSGQ 44 (70)
T ss_dssp CBCSSSCCBCCS-SEEE---SSSSEEETTTS--------BCSSSCCBCTTS
T ss_pred CCCcccCCeecc-ceEE---ECccccCCCCC--------ccCCCCCcCCcC
Confidence 469999988875 2222 25788999884 689999888544
No 167
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=68.19 E-value=1 Score=28.86 Aligned_cols=26 Identities=27% Similarity=0.613 Sum_probs=16.9
Q ss_pred ecCCCccccHhhHHHHhcCCCcccccccccc
Q 045853 138 RSKCNHIFHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 138 l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
...||+.|. .=+.....||.|+..-.
T Consensus 70 C~~CG~~F~-----~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 70 CRKCGFVFK-----AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp BTTTCCBCC-----CCSSCCSSCSSSCCCCB
T ss_pred hhhCcCeec-----ccCCCCCCCcCCCCCcc
Confidence 347999991 12234567999998643
No 168
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=67.57 E-value=0.95 Score=24.95 Aligned_cols=41 Identities=22% Similarity=0.557 Sum_probs=25.2
Q ss_pred cCcccccCCccceeecCCCccccHhhHHHHhc---CCCccccccc
Q 045853 124 ICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD---DHSTCPLCRG 165 (184)
Q Consensus 124 ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~---~~~~CP~CR~ 165 (184)
||-.... +......-.|+.-||..|+.---. ..-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766554 323333445778899999863321 3446888874
No 169
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.24 E-value=2.9 Score=24.98 Aligned_cols=41 Identities=20% Similarity=0.456 Sum_probs=29.3
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
..|+-|-..+..++.+... =+..||.+|+ .|-.|+++|...
T Consensus 16 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFY--EDRHFHEGCF--------RCCRCQRSLADE 56 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCC--SSCCCBTTTS--------BCTTTCCBCSSC
T ss_pred CcCccCCCccccCcEEEEe--CCccccccCC--------eecCCCCccCCC
Confidence 3699999998854443322 4688999884 688998888644
No 170
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=67.05 E-value=4.2 Score=23.03 Aligned_cols=39 Identities=15% Similarity=0.373 Sum_probs=28.6
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
..|+-|-..+. ++.+ ..=|..||.+|+ +|-.|+.++...
T Consensus 6 ~~C~~C~~~I~-~~~~---~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (66)
T 1nyp_A 6 PICGACRRPIE-GRVV---NAMGKQWHVEHF--------VCAKCEKPFLGH 44 (66)
T ss_dssp CEETTTTEECC-SCEE---CCTTSBEETTTC--------BCTTTCCBCSSS
T ss_pred CCCcccCCEec-ceEE---EECccccccCcC--------EECCCCCCCCCC
Confidence 46999999887 3322 235788999884 699999988643
No 171
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=66.93 E-value=1.3 Score=36.43 Aligned_cols=47 Identities=21% Similarity=0.424 Sum_probs=31.8
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhc-----CCCccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD-----DHSTCPLCRGRV 167 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~i 167 (184)
..| ||-..+..+.....+-.|.-.||..|+.---. ..-.||.|+..-
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 345 99888765555555557888899999853222 234599998654
No 172
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=66.83 E-value=0.44 Score=31.09 Aligned_cols=45 Identities=20% Similarity=0.235 Sum_probs=27.7
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhc--------CCCccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD--------DHSTCPLCRG 165 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~--------~~~~CP~CR~ 165 (184)
.|..|......++.+...-.|...||..|...-.. ..-.||.|+.
T Consensus 61 ~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 61 EVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred cccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 34444445555555666667999999999864321 1134999975
No 173
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.17 E-value=5.6 Score=24.28 Aligned_cols=42 Identities=21% Similarity=0.555 Sum_probs=31.6
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
...|+-|-..+...+.+. .-+..||.+|+ +|-.|+..|....
T Consensus 15 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~CF--------~C~~C~~~L~~~~ 56 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL---ANQQVFHISCF--------RCSYCNNKLSLGT 56 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE---CSSSEEETTTC--------BCTTTCCBCCTTT
T ss_pred CCcCccCCCccCCceeEE---ECCCEECCCCC--------eeCCCCCCCCCCC
Confidence 457999999988766543 26788999984 6888888886554
No 174
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=65.81 E-value=4 Score=25.36 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=14.7
Q ss_pred CccccHhhHHHHhcCCCccccccccccc
Q 045853 142 NHIFHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 142 ~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
|..|+..|..+- ....|..|.+.|.+
T Consensus 53 g~~yC~~cy~~~--~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 53 NKILCNKCTTRE--DSPKCKGCFKAIVA 78 (101)
T ss_dssp TEEECHHHHTTC--CCCBCSSSCCBCCS
T ss_pred CEEEChhHhhhh--cCCccccCCCcccc
Confidence 455555554322 23567777777753
No 175
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=65.70 E-value=4.6 Score=23.47 Aligned_cols=34 Identities=18% Similarity=0.484 Sum_probs=24.0
Q ss_pred CCCCcccccCcccccCCccceeecCC-CccccHhhHHHHh
Q 045853 116 VNKTSTCVICLEEFRDGDECKVRSKC-NHIFHQTCMDDWL 154 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~~~~~~~l~~C-~H~FH~~Ci~~Wl 154 (184)
..+..-|.||.++-. ++ ...| |-+|+..|..+--
T Consensus 5 ~ee~pWC~ICneDAt----lr-C~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 5 SSGLPWCCICNEDAT----LR-CAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCCSSCTTTCSCCC----EE-ETTTTSEEECSSHHHHHT
T ss_pred CcCCCeeEEeCCCCe----EE-ecCCCCceehHHHHHHHc
Confidence 344557999998833 24 4479 6899999976654
No 176
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=65.07 E-value=3.4 Score=24.26 Aligned_cols=41 Identities=17% Similarity=0.461 Sum_probs=29.8
Q ss_pred cccccCcccccC---CccceeecCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 120 STCVICLEEFRD---GDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 120 ~~C~ICl~~~~~---~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
..|+-|-..+.. ++..... =+..||.+|+ +|-.|+.+|...
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 59 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAY--EGQSWHDYCF--------HCKKCSVNLANK 59 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEE--TTEEEETTTC--------BCSSSCCBCTTS
T ss_pred ccCcccCCcccCCCCCceeEEE--CcceeCcccC--------EehhcCCCCCCC
Confidence 469999998885 3333332 4678999884 699999998644
No 177
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=63.25 E-value=0.87 Score=22.92 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=10.9
Q ss_pred CcccccCcccccCCcc
Q 045853 119 TSTCVICLEEFRDGDE 134 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~ 134 (184)
+..|+||+..+...+.
T Consensus 5 GFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 5 GFICPQCMKSLGSADE 20 (34)
T ss_dssp EEECTTTCCEESSHHH
T ss_pred ccCCcHHHHHcCCHHH
Confidence 3468888887776544
No 178
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=62.95 E-value=5.5 Score=22.19 Aligned_cols=11 Identities=18% Similarity=0.217 Sum_probs=4.8
Q ss_pred hhHHHHHHHHH
Q 045853 16 LRLLVLTTPLV 26 (184)
Q Consensus 16 ~~~~~~~~~~~ 26 (184)
..+|+++..++
T Consensus 7 vp~WiIi~svl 17 (54)
T 2l8s_A 7 VPLWVILLSAF 17 (54)
T ss_dssp CCTHHHHHHHH
T ss_pred CchHHHHHHHH
Confidence 34455444333
No 179
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.70 E-value=4.3 Score=23.73 Aligned_cols=37 Identities=22% Similarity=0.458 Sum_probs=25.7
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
..|+-|-..+.. + .+..-+..||.+|+ +|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~-~---~v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-R---VLEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-C---CBCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CCcccCCCEecC-e---eEEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 368888888765 2 22235788998884 6778877775
No 180
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=62.24 E-value=0.81 Score=26.00 Aligned_cols=49 Identities=31% Similarity=0.539 Sum_probs=27.3
Q ss_pred CCCCcccccCccc-ccCCccceeecCCCccccHhhHHHHhcCC-C---ccccccc
Q 045853 116 VNKTSTCVICLEE-FRDGDECKVRSKCNHIFHQTCMDDWLDDH-S---TCPLCRG 165 (184)
Q Consensus 116 ~~~~~~C~ICl~~-~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~-~---~CP~CR~ 165 (184)
..+...|.||... |.++-. ...-.|.-.|+..|=..|-.+. . .|-+||+
T Consensus 6 ~~d~~~C~iC~KTKFADG~G-h~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCG-HNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCC-EEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceeccCCC-ccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 3455689999965 665432 2222355566666655554322 2 2777765
No 181
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=61.82 E-value=6.7 Score=27.10 Aligned_cols=34 Identities=29% Similarity=0.585 Sum_probs=24.4
Q ss_pred CCcccccCcccccCCccceeec--CCCccccHhhHHHHhc
Q 045853 118 KTSTCVICLEEFRDGDECKVRS--KCNHIFHQTCMDDWLD 155 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~--~C~H~FH~~Ci~~Wl~ 155 (184)
.+..|.||-+ +.++...- .|...|+..||+.++-
T Consensus 78 ~~~yC~wC~~----Gg~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 78 YQSYCTICCG----GREVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp SBSSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CcceeeEecC----CCeEEeeCCCCCCCchhHHHHHHhcC
Confidence 3456888885 33445443 4778999999999986
No 182
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=60.81 E-value=3.9 Score=23.20 Aligned_cols=41 Identities=17% Similarity=0.361 Sum_probs=29.8
Q ss_pred ccccCcccccCCccceeecCCCcccc--HhhHHHHhcCCCccccccccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFH--QTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH--~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
.|+-|-..+..++..... -|..|| .+|+ +|-.|+.+|....
T Consensus 4 ~C~~C~~~I~~~~~~v~a--~~~~wH~~~~CF--------~C~~C~~~L~~~~ 46 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTY--NNFSWHASTECF--------LCSCCSKCLIGQK 46 (65)
T ss_dssp ECTTTSSEECTTSCEEEE--TTEEEETTTTTS--------BCTTTCCBCTTSC
T ss_pred CCcCCCCeeccCceEEEE--CCCccCCCCCCE--------ECCCCCCcCCCCc
Confidence 689999988865443332 578899 9984 7899998886443
No 183
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=60.41 E-value=2 Score=20.55 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=8.6
Q ss_pred CCcccccccccc
Q 045853 157 HSTCPLCRGRVR 168 (184)
Q Consensus 157 ~~~CP~CR~~i~ 168 (184)
+..||+|+....
T Consensus 3 k~~CpvCk~q~P 14 (28)
T 2jvx_A 3 DFCCPKCQYQAP 14 (28)
T ss_dssp CEECTTSSCEES
T ss_pred cccCccccccCc
Confidence 456999988663
No 184
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=60.09 E-value=4.7 Score=26.27 Aligned_cols=27 Identities=19% Similarity=0.468 Sum_probs=11.8
Q ss_pred ccccCcccccCCccceeecCCCccccHhh
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTC 149 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~C 149 (184)
.|+-|-..+...+.+... -++.||.+|
T Consensus 10 ~C~~C~~~I~~~e~~~~a--~~~~~H~~C 36 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRV--KDKVYHLEC 36 (123)
T ss_dssp CCSSSSCCCCTTCCCCCC--SSCCCCTTT
T ss_pred cccCCCCeecCCceEEEE--CCccccccc
Confidence 355555555443332211 244555555
No 185
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.87 E-value=4.7 Score=23.89 Aligned_cols=38 Identities=18% Similarity=0.414 Sum_probs=27.6
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
..|+-|-..+. +..+. .-+..||.+|+ +|-.|+..|..
T Consensus 16 ~~C~~C~~~I~-~~~~~---a~~~~~H~~CF--------~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFMV---AGEFKYHPECF--------ACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-SCCBC---CTTCCBCTTSC--------BCTTTCCBCCT
T ss_pred CcCccCCCCcC-ceEEE---ECCceeccccC--------CccCCCCccCC
Confidence 36999998888 32222 25788999884 69999988854
No 186
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.61 E-value=3.1 Score=24.76 Aligned_cols=39 Identities=18% Similarity=0.510 Sum_probs=27.2
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
..|+-|-..+.. +.+. .-+..||.+|+ +|-.|+++|...
T Consensus 16 ~~C~~C~~~I~~-~~v~---a~~~~wH~~CF--------~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EVVS---ALGKTYHPDCF--------VCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCCS-CCEE---ETTEEECTTTS--------SCSSSCCCCCSS
T ss_pred CcCccccCEecc-ceEE---ECCceeCccCC--------ccccCCCCCCCC
Confidence 369999998873 3222 25788999884 588888777543
No 187
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.09 E-value=3.2 Score=23.80 Aligned_cols=39 Identities=21% Similarity=0.536 Sum_probs=27.9
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
..|+-|-..+.. +.+.. =+..||.+|+ +|-.|+.+|...
T Consensus 6 ~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~ 44 (69)
T 2cur_A 6 SGCVKCNKAITS-GGITY---QDQPWHADCF--------VCVTCSKKLAGQ 44 (69)
T ss_dssp CCCSSSCCCCCT-TCEEE---TTEEECTTTT--------BCTTTCCBCTTS
T ss_pred CCCcccCCEeCc-ceEEE---CccccccCcC--------EECCCCCCCCCC
Confidence 469999988864 33322 5688999885 688999888643
No 188
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=57.09 E-value=6.1 Score=27.22 Aligned_cols=38 Identities=16% Similarity=0.594 Sum_probs=23.4
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
.|..|-..+..++.+... -++.||.+|+ .|-.|+..|.
T Consensus 67 ~C~~C~~~I~~~~~v~~a--~~~~~H~~CF--------~C~~C~~~L~ 104 (169)
T 2rgt_A 67 KCAACQLGIPPTQVVRRA--QDFVYHLHCF--------ACVVCKRQLA 104 (169)
T ss_dssp BCTTTCCBCCTTSEEEEE--TTEEEEGGGC--------BCTTTCCBCC
T ss_pred cccccccccCCCcEEEEc--CCceEeeCCC--------cCCCCCCCCC
Confidence 466666666554433322 4677787774 6777777765
No 189
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=56.87 E-value=14 Score=23.89 Aligned_cols=32 Identities=28% Similarity=0.518 Sum_probs=20.8
Q ss_pred CCCccccHhhHH------HHhc-----CCCccccccccccccc
Q 045853 140 KCNHIFHQTCMD------DWLD-----DHSTCPLCRGRVRRIA 171 (184)
Q Consensus 140 ~C~H~FH~~Ci~------~Wl~-----~~~~CP~CR~~i~~~~ 171 (184)
.|++.||..|.. .-+. ....||.|...-....
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~~~~~ 49 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHVDGG 49 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTSCCCC
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCccccccccCCC
Confidence 589999999952 1122 2467999976554433
No 190
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=55.41 E-value=8.8 Score=30.49 Aligned_cols=34 Identities=21% Similarity=0.540 Sum_probs=24.3
Q ss_pred CCcccccCcccccCCccceeec--CCCccccHhhHHHHhc
Q 045853 118 KTSTCVICLEEFRDGDECKVRS--KCNHIFHQTCMDDWLD 155 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~--~C~H~FH~~Ci~~Wl~ 155 (184)
.+..|.+|-+. .++...- .|...||..||+..+-
T Consensus 92 ~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g 127 (386)
T 2pv0_B 92 YQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVG 127 (386)
T ss_dssp SBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTC
T ss_pred CcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcC
Confidence 34467777753 3445554 6889999999999984
No 191
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=54.51 E-value=8.5 Score=21.93 Aligned_cols=25 Identities=28% Similarity=0.676 Sum_probs=20.0
Q ss_pred CCcccccccccccccCCCCCCCCCC
Q 045853 157 HSTCPLCRGRVRRIAWPSFTTADDW 181 (184)
Q Consensus 157 ~~~CP~CR~~i~~~~~~~~~~~~~~ 181 (184)
+..||.|-.+......+.|++.|-.
T Consensus 18 k~~CP~CG~~T~~~hParfSp~Dky 42 (60)
T 2apo_B 18 KEICPKCGEKTVIPKPPKFSLEDRW 42 (60)
T ss_dssp SSBCSSSCSBCBCCCCCCCCTTCTT
T ss_pred cccCcCCCCcCCCCCCCCCCCCcch
Confidence 5679999998888888888877753
No 192
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=52.96 E-value=9 Score=30.27 Aligned_cols=47 Identities=19% Similarity=0.379 Sum_probs=28.4
Q ss_pred ccccCcccccCCccceeecCCCcc--ccHhhHHHHhc--CCCcccccccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHI--FHQTCMDDWLD--DHSTCPLCRGRVRRI 170 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~--FH~~Ci~~Wl~--~~~~CP~CR~~i~~~ 170 (184)
.|++=...+.. .+|-. .|.|. |-..=+-..-. ..-.||+|.+.+...
T Consensus 251 ~CPlS~~ri~~--PvRg~-~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 251 QCPISYTRMKY--PSKSI-NCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp BCTTTSSBCSS--EEEET-TCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred cCCCccccccc--cCcCC-cCCCcceECHHHHHHHhhcCCceeCCCCCcccCHH
Confidence 58887776655 34444 59997 44433322222 345699999987443
No 193
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.93 E-value=4.6 Score=23.87 Aligned_cols=40 Identities=15% Similarity=0.389 Sum_probs=29.0
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 171 (184)
..|+-|-..+.. +.+. .=+..||.+|+ +|-.|+.++....
T Consensus 16 ~~C~~C~~~I~~-~~v~---a~~~~~H~~CF--------~C~~C~~~L~~~~ 55 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLS---AMDTVWHPECF--------VCGDCFTSFSTGS 55 (80)
T ss_dssp CBCTTTCCBCCS-SCEE---ETTEEECTTTC--------BCSSSCCBSCSSC
T ss_pred CccccCCCeecc-eeEE---ECCCeEecCcC--------ChhhCCCCCCCCc
Confidence 469999988875 2222 25678999884 6999999886543
No 194
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=52.49 E-value=5.9 Score=20.85 Aligned_cols=14 Identities=0% Similarity=0.010 Sum_probs=6.7
Q ss_pred cchhHHHHHHHHHH
Q 045853 14 EGLRLLVLTTPLVI 27 (184)
Q Consensus 14 ~~~~~~~~~~~~~i 27 (184)
.+..+|+++..++.
T Consensus 6 ~~vp~wiIi~s~l~ 19 (42)
T 2k1a_A 6 RAIPIWWVLVGVLG 19 (42)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CCcchHHHHHHHHH
Confidence 34556654444333
No 195
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=52.06 E-value=2.6 Score=34.26 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=32.3
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhc-----CCCcccccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLD-----DHSTCPLCRGRVR 168 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~i~ 168 (184)
...||-..+..+.....+-.|.-.||..|+.---. ..-.||.|+....
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 45689887764554455556888899999852211 2346999987654
No 196
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=51.92 E-value=1.5 Score=26.61 Aligned_cols=39 Identities=15% Similarity=0.441 Sum_probs=24.1
Q ss_pred ccccc--CcccccC--Cccceeec-----CCCccccHhhHHHHhcCCCcc
Q 045853 120 STCVI--CLEEFRD--GDECKVRS-----KCNHIFHQTCMDDWLDDHSTC 160 (184)
Q Consensus 120 ~~C~I--Cl~~~~~--~~~~~~l~-----~C~H~FH~~Ci~~Wl~~~~~C 160 (184)
.-|+- |-..+.. +......+ .|||.|+..|-..|-. .+|
T Consensus 26 ~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 26 VLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS--SCS
T ss_pred EECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC--Ccc
Confidence 34665 5544432 22334454 6999999999999844 445
No 197
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=51.83 E-value=9.2 Score=30.11 Aligned_cols=47 Identities=17% Similarity=0.443 Sum_probs=28.8
Q ss_pred ccccCcccccCCccceeecCCCcc--ccHhhHHHHhc--CCCcccccccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHI--FHQTCMDDWLD--DHSTCPLCRGRVRRI 170 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~--FH~~Ci~~Wl~--~~~~CP~CR~~i~~~ 170 (184)
.|+|=...+.. .+|-. .|.|. |-..=+-.... ..-.||+|.+.+...
T Consensus 217 ~CPlS~~ri~~--P~Rg~-~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 217 MCPLGKMRLTI--PCRAV-TCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp BCTTTCSBCSS--EEEET-TCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eCCCccceecc--CCcCC-CCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH
Confidence 58887766654 34444 59987 55443333322 345699999987543
No 198
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=51.19 E-value=3.9 Score=28.22 Aligned_cols=27 Identities=26% Similarity=0.549 Sum_probs=17.4
Q ss_pred eecCCCccccHhhHHHHhcCCCccccccccccc
Q 045853 137 VRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 137 ~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
....|||.|-.. .....||.|-.++..
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~~~ 160 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKVKL 160 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBEEE
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCccee
Confidence 355688888643 223479999887643
No 199
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=50.99 E-value=9.6 Score=24.86 Aligned_cols=39 Identities=18% Similarity=0.465 Sum_probs=29.7
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
...|+-|-..+.....+.. -+..||.+|+ +|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEccccc--------CcCcCCCccc
Confidence 4579999998876433332 5788999994 7999999986
No 200
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.88 E-value=6.5 Score=23.29 Aligned_cols=40 Identities=23% Similarity=0.576 Sum_probs=28.6
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
...|+-|-..+.+ . +.. .-+..||.+|+ +|..|++.|...
T Consensus 15 ~~~C~~C~~~I~~-~-~~~--a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (81)
T 2dlo_A 15 LEKCATCSQPILD-R-ILR--AMGKAYHPGCF--------TCVVCHRGLDGI 54 (81)
T ss_dssp CCBCTTTCCBCCS-C-CEE--ETTEEECTTTC--------BCSSSCCBCTTS
T ss_pred CCccccCCCeecc-e-eEE--ECCccccHHhc--------CcccCCCccCCC
Confidence 3479999988873 2 222 25788999884 699999988643
No 201
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.65 E-value=9.1 Score=22.42 Aligned_cols=46 Identities=26% Similarity=0.465 Sum_probs=26.2
Q ss_pred ccccCcccccCCccceeecCCC---ccccHhhHHHHhc--CCCccccccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCN---HIFHQTCMDDWLD--DHSTCPLCRGRVRR 169 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~---H~FH~~Ci~~Wl~--~~~~CP~CR~~i~~ 169 (184)
-| ||-... .+ .....-.|+ ..||..|+..--. ..-.||.|+.....
T Consensus 8 yC-~C~~~~-~g-~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~~k 58 (70)
T 1x4i_A 8 YC-ICNQVS-YG-EMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMKR 58 (70)
T ss_dssp CS-TTSCCC-CS-SEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHHHH
T ss_pred EE-EcCCCC-CC-CEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCccccc
Confidence 45 576652 33 223333443 6799999972111 23359999887643
No 202
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=47.06 E-value=3.1 Score=24.34 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=12.9
Q ss_pred HHHhcCCCccccccccccc
Q 045853 151 DDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 151 ~~Wl~~~~~CP~CR~~i~~ 169 (184)
+.|+..--.||.|+.++.-
T Consensus 4 d~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEE
T ss_pred CHHHHHHhCCCCCCCcCeE
Confidence 3455556678888887753
No 203
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=47.06 E-value=7.2 Score=27.49 Aligned_cols=41 Identities=15% Similarity=0.485 Sum_probs=29.4
Q ss_pred CcccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccccc
Q 045853 119 TSTCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRI 170 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 170 (184)
...|+-|-..+..++.+.. =+..||.+|+ +|-.|+..|...
T Consensus 115 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~~~ 155 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIG---AGKSWHKSCF--------RCAKCGKSLEST 155 (192)
T ss_dssp CEECTTTSCEECSSSCEEE---TTEEECTTTC--------BCTTTCCBCCSS
T ss_pred CCcCCCCCCEecCcEEEec---CCCccchhcC--------CccccCCCCCCC
Confidence 3469999998877655542 4678888883 688888887544
No 204
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=46.43 E-value=3.3 Score=24.37 Aligned_cols=18 Identities=39% Similarity=0.898 Sum_probs=11.9
Q ss_pred HHHhcCCCcccccccccc
Q 045853 151 DDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 151 ~~Wl~~~~~CP~CR~~i~ 168 (184)
+.|+..--.||.|+.++.
T Consensus 2 d~~LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLK 19 (69)
T ss_dssp -CCGGGTCCCTTTCCCCE
T ss_pred ChHHHhheeCCCCCCcCe
Confidence 345555567899988775
No 205
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=45.94 E-value=13 Score=26.11 Aligned_cols=38 Identities=24% Similarity=0.655 Sum_probs=25.1
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
.|..|-..+...+.+... -++.||.+|+ +|-.|++.+.
T Consensus 71 ~C~~C~~~I~~~e~~i~a--~~~~~H~~CF--------~C~~C~~~L~ 108 (188)
T 1rut_X 71 ACSACGQSIPASELVMRA--QGNVYHLKCF--------TCSTCRNRLV 108 (188)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEECGGGC--------BCTTTCCBCC
T ss_pred ccccCCCccccCcEEEEc--CCCEEeCCCC--------eECCCCCCCC
Confidence 588888877765543322 5778888883 5777766663
No 206
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=45.27 E-value=13 Score=21.15 Aligned_cols=25 Identities=28% Similarity=0.731 Sum_probs=20.1
Q ss_pred CCcccccccccccccCCCCCCCCCC
Q 045853 157 HSTCPLCRGRVRRIAWPSFTTADDW 181 (184)
Q Consensus 157 ~~~CP~CR~~i~~~~~~~~~~~~~~ 181 (184)
+..||.|-.+......+.|++.|-.
T Consensus 17 k~~CP~CG~~t~~ahParfSP~Dky 41 (60)
T 2aus_D 17 KETCPVCGEKTKVAHPPRFSPEDPY 41 (60)
T ss_dssp SSBCTTTCSBCEESSCCCCCSCCTT
T ss_pred cccCcCCCCccCCCCCCCCCCCCch
Confidence 4679999999888888888887753
No 207
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=44.87 E-value=9.5 Score=26.59 Aligned_cols=10 Identities=20% Similarity=0.514 Sum_probs=4.8
Q ss_pred ccccCccccc
Q 045853 121 TCVICLEEFR 130 (184)
Q Consensus 121 ~C~ICl~~~~ 130 (184)
.|..|-..+.
T Consensus 89 ~C~~C~~~L~ 98 (182)
T 2jtn_A 89 KCSDCHVPLA 98 (182)
T ss_dssp SCTTTCCCCS
T ss_pred ccCCCCCccC
Confidence 4555554444
No 208
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=50.29 E-value=4.7 Score=20.73 Aligned_cols=9 Identities=22% Similarity=0.298 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 045853 40 ISYYLFTQL 48 (184)
Q Consensus 40 i~~~~~~~~ 48 (184)
+.++.|.++
T Consensus 27 iLi~~w~qK 35 (39)
T 2l6w_A 27 ILIMLWQKK 35 (39)
Confidence 333444443
No 209
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=44.31 E-value=1.6 Score=26.77 Aligned_cols=44 Identities=18% Similarity=0.462 Sum_probs=26.2
Q ss_pred cccCcccccCC--ccceeecCCCccccHhhHHHHhcC--CCccccccc
Q 045853 122 CVICLEEFRDG--DECKVRSKCNHIFHQTCMDDWLDD--HSTCPLCRG 165 (184)
Q Consensus 122 C~ICl~~~~~~--~~~~~l~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~ 165 (184)
|+=|-..+..+ ...+..+.|+|.|+..|-..|=.. ..+|..-++
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~ 75 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQN 75 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHH
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCCChHHHHH
Confidence 66555443322 222445569999999999988332 345665443
No 210
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.17 E-value=12 Score=21.95 Aligned_cols=38 Identities=21% Similarity=0.630 Sum_probs=27.6
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCccccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 169 (184)
..|+-|-..+..+ . +. .=+..||.+|+ +|-.|+++|..
T Consensus 16 ~~C~~C~~~I~~~-~--v~-a~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 2cuq_A 16 PRCARCSKTLTQG-G--VT-YRDQPWHRECL--------VCTGCQTPLAG 53 (80)
T ss_dssp CCCTTTCCCCCSC-C--EE-SSSSEECTTTC--------BCSSSCCBCTT
T ss_pred CcCCCCCCEecCc-E--EE-ECCchhhhhhC--------CcccCCCcCCC
Confidence 4699999888653 2 22 35788999884 68899988854
No 211
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=43.95 E-value=10 Score=26.38 Aligned_cols=25 Identities=16% Similarity=0.446 Sum_probs=15.6
Q ss_pred ceeecCCCccccHhhHHHHhcCCCcccccccc
Q 045853 135 CKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGR 166 (184)
Q Consensus 135 ~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 166 (184)
.-+++.|||++-. .....||+|..+
T Consensus 138 ~~~C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 138 VYICPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp EEECTTTCCEEES-------CCCSBCTTTCCB
T ss_pred eeEeCCCCCeeCC-------CCCCCCCCCCCC
Confidence 3456678887652 223479999754
No 212
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=43.00 E-value=14 Score=20.62 Aligned_cols=28 Identities=14% Similarity=0.453 Sum_probs=15.6
Q ss_pred CCcccccCcccccCCccceeec--CCCccc
Q 045853 118 KTSTCVICLEEFRDGDECKVRS--KCNHIF 145 (184)
Q Consensus 118 ~~~~C~ICl~~~~~~~~~~~l~--~C~H~F 145 (184)
+--.|+.|......++..-+.+ .||+.|
T Consensus 9 ~iL~CP~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 9 EILACPACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp TSCCCSSSCSCEEEETTEEEECSSSCCCEE
T ss_pred hheeCCCCCCcceecCCEEEcCCcCCCcEE
Confidence 3446888888765443323333 465554
No 213
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=40.95 E-value=7.3 Score=22.10 Aligned_cols=16 Identities=19% Similarity=0.634 Sum_probs=10.9
Q ss_pred CCCccccccccccccc
Q 045853 156 DHSTCPLCRGRVRRIA 171 (184)
Q Consensus 156 ~~~~CP~CR~~i~~~~ 171 (184)
..+.||.|+..|...+
T Consensus 5 ~~k~CP~C~~~Iek~~ 20 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDG 20 (60)
T ss_dssp CCCCCTTTCCCCSSCC
T ss_pred cceECcCCCCeeEeCC
Confidence 3456888888876543
No 214
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=40.84 E-value=28 Score=15.96 Aligned_cols=11 Identities=27% Similarity=0.304 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 045853 33 LILFLFYISYY 43 (184)
Q Consensus 33 li~~~~~i~~~ 43 (184)
++.+...++.|
T Consensus 12 viav~aaVlly 22 (26)
T 3j1r_A 12 LIAVAAAVLLY 22 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 215
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=38.96 E-value=18 Score=24.07 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=19.4
Q ss_pred CcccccCcccccCCc-cceeecCCCcc
Q 045853 119 TSTCVICLEEFRDGD-ECKVRSKCNHI 144 (184)
Q Consensus 119 ~~~C~ICl~~~~~~~-~~~~l~~C~H~ 144 (184)
-..|+-|-.+|.-+| .+.+.|.|+|-
T Consensus 27 lP~CP~C~seytYeDg~l~vCPeC~hE 53 (138)
T 2akl_A 27 LPPCPQCNSEYTYEDGALLVCPECAHE 53 (138)
T ss_dssp SCCCTTTCCCCCEECSSSEEETTTTEE
T ss_pred CCCCCCCCCcceEecCCeEECCccccc
Confidence 357999999987544 45678888883
No 216
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=38.75 E-value=9.8 Score=26.97 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=14.8
Q ss_pred eeecCCCccccHhhHHHHhcCCCcccccccc
Q 045853 136 KVRSKCNHIFHQTCMDDWLDDHSTCPLCRGR 166 (184)
Q Consensus 136 ~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 166 (184)
-+++.|||++-.. .....||+|..+
T Consensus 156 ~~C~~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 156 WRCRNCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp EEETTTCCEEEEE------ECCSBCTTTCCB
T ss_pred EEECCCCCEeeCC------CCCCCCCCCcCC
Confidence 4455678775422 122379999775
No 217
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=38.39 E-value=9.6 Score=23.97 Aligned_cols=40 Identities=15% Similarity=0.428 Sum_probs=24.3
Q ss_pred cccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccc
Q 045853 120 STCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 120 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
..|+.|..++.-.........|+- . +.....||-|.+++.
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~--------~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGE--------F-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCC--------E-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecCCEEECccccc--------h-hhccccCcchhhHHH
Confidence 479999988875333222333432 1 234566999988875
No 218
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=38.25 E-value=1.9 Score=19.38 Aligned_cols=12 Identities=42% Similarity=1.002 Sum_probs=8.8
Q ss_pred cccHhhHHHHhc
Q 045853 144 IFHQTCMDDWLD 155 (184)
Q Consensus 144 ~FH~~Ci~~Wl~ 155 (184)
.||..|-.+|+.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 478888877764
No 219
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=37.39 E-value=19 Score=23.20 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=19.0
Q ss_pred ccccCcccccCCccceeecCCCcccc--HhhHHHHhcCCCcccccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFH--QTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH--~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
.|+.|-..+..++.+... -++.|| .+| .+|-.|++++.
T Consensus 65 ~C~~C~~~I~~~~~~~~a--~~~~~H~~~~C--------F~C~~C~~~l~ 104 (126)
T 2xqn_T 65 VCQGCHNAIDPEVQRVTY--NNFSWHASTEC--------FLCSCCSKCLI 104 (126)
T ss_dssp BCTTTCSBCCTTSCEEEE--TTEEEESSTTT--------SBCTTTCCBCT
T ss_pred cCcccCCcCCcCceEEEC--CCCEeeCCCCC--------cCcCCCCCccC
Confidence 455555555543332222 355566 555 24556655554
No 220
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=37.07 E-value=16 Score=26.21 Aligned_cols=24 Identities=25% Similarity=0.660 Sum_probs=15.0
Q ss_pred eeecCCCccccHhhHHHHhcCCCcccccccc
Q 045853 136 KVRSKCNHIFHQTCMDDWLDDHSTCPLCRGR 166 (184)
Q Consensus 136 ~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 166 (184)
-+++.|||++- . ..-..||+|..+
T Consensus 172 ~~C~~CG~i~~-g------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 172 HLCPICGYIHK-G------EDFEKCPICFRP 195 (202)
T ss_dssp EECSSSCCEEE-S------SCCSBCTTTCCB
T ss_pred EEECCCCCEEc-C------cCCCCCCCCCCC
Confidence 45566888754 2 122479999764
No 221
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=37.05 E-value=3.3 Score=24.29 Aligned_cols=16 Identities=31% Similarity=0.657 Sum_probs=10.2
Q ss_pred HhcCCCcccccccccc
Q 045853 153 WLDDHSTCPLCRGRVR 168 (184)
Q Consensus 153 Wl~~~~~CP~CR~~i~ 168 (184)
|+..--.||.|+.++.
T Consensus 4 ~LL~iL~CP~ck~~L~ 19 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLE 19 (68)
T ss_dssp SSSCCCBCSSSCCBCE
T ss_pred HHhhheECCCCCCcCe
Confidence 3444456888887764
No 222
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.65 E-value=26 Score=20.92 Aligned_cols=34 Identities=24% Similarity=0.552 Sum_probs=22.6
Q ss_pred CCCCcccccCcccccC-CccceeecCCCccccHhh
Q 045853 116 VNKTSTCVICLEEFRD-GDECKVRSKCNHIFHQTC 149 (184)
Q Consensus 116 ~~~~~~C~ICl~~~~~-~~~~~~l~~C~H~FH~~C 149 (184)
.+....|+.|.+.+-- .+.-.....|.|..+.+|
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 4556689999999863 222244557888666666
No 223
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=36.17 E-value=34 Score=21.95 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=33.3
Q ss_pred ccccCcccccC-CccceeecCCCccccHhhHHHHhcCCCcccccccccccccC
Q 045853 121 TCVICLEEFRD-GDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVRRIAW 172 (184)
Q Consensus 121 ~C~ICl~~~~~-~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~ 172 (184)
.|..|-..+.+ +... .. .=|..|+..|..+-+..+..|-.|.+.|....+
T Consensus 34 ~C~~C~~~L~~~~~~~-~~-~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSS-YT-KSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp CCSSSCCCTTTSEECC-EE-ETTEEECHHHHHHHHCCCCSSSCSSCCSCCEES
T ss_pred CcCCCCCcccccCCeE-EE-ECCeeecHHHHHHHcCCCCccccCCCCcCchhe
Confidence 47777777653 1221 22 256778888988877655589999998876543
No 224
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=34.45 E-value=3.1 Score=32.13 Aligned_cols=49 Identities=14% Similarity=0.327 Sum_probs=31.6
Q ss_pred CCCcccccCcccccCCcccee-ecCCC--ccccHhhHHHHhcCCCcccccccc
Q 045853 117 NKTSTCVICLEEFRDGDECKV-RSKCN--HIFHQTCMDDWLDDHSTCPLCRGR 166 (184)
Q Consensus 117 ~~~~~C~ICl~~~~~~~~~~~-l~~C~--H~FH~~Ci~~Wl~~~~~CP~CR~~ 166 (184)
.....|++|-..-..+ .++. -..=| |.+|.-|-..|--....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4567899999876543 1111 00112 456667777888788899999775
No 225
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=33.57 E-value=3.7 Score=24.24 Aligned_cols=16 Identities=44% Similarity=0.987 Sum_probs=10.2
Q ss_pred HhcCCCcccccccccc
Q 045853 153 WLDDHSTCPLCRGRVR 168 (184)
Q Consensus 153 Wl~~~~~CP~CR~~i~ 168 (184)
|+..--.||.|+.++.
T Consensus 4 ~LL~iL~CP~ck~~L~ 19 (70)
T 2js4_A 4 RLLDILVCPVCKGRLE 19 (70)
T ss_dssp CCCCCCBCTTTCCBEE
T ss_pred HHhhheECCCCCCcCE
Confidence 3444456888888765
No 226
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=31.89 E-value=3.3 Score=24.30 Aligned_cols=12 Identities=42% Similarity=1.068 Sum_probs=8.2
Q ss_pred CCcccccccccc
Q 045853 157 HSTCPLCRGRVR 168 (184)
Q Consensus 157 ~~~CP~CR~~i~ 168 (184)
--.||.|+.++.
T Consensus 8 iL~CP~ck~~L~ 19 (68)
T 2hf1_A 8 ILVCPLCKGPLV 19 (68)
T ss_dssp ECBCTTTCCBCE
T ss_pred heECCCCCCcCe
Confidence 345888887764
No 227
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=30.14 E-value=49 Score=21.24 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=11.9
Q ss_pred CccccHhhHHHHhcCCCcccccccccc
Q 045853 142 NHIFHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 142 ~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
|..|+..|..+-+.....|..|.+.|.
T Consensus 51 g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 51 GRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred CEEeecCchhhhCCCccChhhcCCccC
Confidence 344445554443332224555555443
No 228
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=30.09 E-value=23 Score=22.49 Aligned_cols=37 Identities=30% Similarity=0.671 Sum_probs=17.5
Q ss_pred ccccCcccccCCccceeecCCCccccHhhHHHHhcCCCcccccccccc
Q 045853 121 TCVICLEEFRDGDECKVRSKCNHIFHQTCMDDWLDDHSTCPLCRGRVR 168 (184)
Q Consensus 121 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 168 (184)
.|+-|-..+...+.+. --+..||.+|+ +|-.|+.+|.
T Consensus 5 ~C~~C~~~I~~~~~~~---a~~~~wH~~CF--------~C~~C~~~L~ 41 (114)
T 1j2o_A 5 TCGGCQQNIGDRYFLK---AIDQYWHEDCL--------SCDLCGCRLG 41 (114)
T ss_dssp CBSSSCSCBCSSEEEE---CSSSEECTTTC--------CCSSSCSCCC
T ss_pred CCcCCCCeeCCcEEEE---ECchhHHHhcC--------cccccCCchh
Confidence 4555555555322221 13445555552 4555555553
No 229
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=26.49 E-value=55 Score=19.86 Aligned_cols=34 Identities=26% Similarity=0.675 Sum_probs=20.1
Q ss_pred CcccccCccc-ccCCccceeecCCCccccHhhHHHH
Q 045853 119 TSTCVICLEE-FRDGDECKVRSKCNHIFHQTCMDDW 153 (184)
Q Consensus 119 ~~~C~ICl~~-~~~~~~~~~l~~C~H~FH~~Ci~~W 153 (184)
...|.||-.. .-.--.. -...|.-.||..|..+-
T Consensus 17 ~l~C~iC~~~~~GAciqC-~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 17 KLTCYLCKQKGVGASIQC-HKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCBTTTTBCCSSCEEEC-SCTTTCCEEEHHHHHHH
T ss_pred cCCCcCCCCCCCcEeEec-CCCCCCCcCcHHHHHHC
Confidence 4579999653 1110011 12357789999998653
No 230
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=25.84 E-value=2.2e+02 Score=21.62 Aligned_cols=8 Identities=25% Similarity=0.717 Sum_probs=4.0
Q ss_pred hhHHHHhc
Q 045853 148 TCMDDWLD 155 (184)
Q Consensus 148 ~Ci~~Wl~ 155 (184)
+-.+.|+.
T Consensus 266 ~~F~~Wl~ 273 (298)
T 3hb3_B 266 EKYEAWLA 273 (298)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33555654
No 231
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=25.39 E-value=15 Score=24.26 Aligned_cols=27 Identities=19% Similarity=0.409 Sum_probs=21.2
Q ss_pred CCCccccHhhHHHHhc---C--CCcccccccc
Q 045853 140 KCNHIFHQTCMDDWLD---D--HSTCPLCRGR 166 (184)
Q Consensus 140 ~C~H~FH~~Ci~~Wl~---~--~~~CP~CR~~ 166 (184)
.|.|+++..++..|-. . ...|+.|+..
T Consensus 6 ~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~ 37 (126)
T 2i50_A 6 VCRHIRKGLEQGNLKKALVNVEWNICQDCKTD 37 (126)
T ss_dssp CCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTC
T ss_pred CCcChhhccccccccccccCCCCCcCcccccc
Confidence 5999999999988853 1 2569999874
No 232
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=25.16 E-value=32 Score=20.07 Aligned_cols=10 Identities=40% Similarity=0.963 Sum_probs=5.7
Q ss_pred cccccccccc
Q 045853 159 TCPLCRGRVR 168 (184)
Q Consensus 159 ~CP~CR~~i~ 168 (184)
.||+|.+++.
T Consensus 11 ~CP~Cgkp~~ 20 (68)
T 1lv3_A 11 NCPTCGKTVV 20 (68)
T ss_dssp ECTTTCCEEE
T ss_pred cCCCCCCccc
Confidence 4666666553
No 233
>3i1m_R 30S ribosomal protein S18; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_R* 1vs5_R 3i1o_R 3i1q_R 3i1s_R 3i1z_R 3i21_R 3izv_V* 3izw_V* 3kc4_R 3or9_R 3ora_R 3sfs_R* 3uoq_R* 4gaq_R* 4gas_R* 2qal_R* 1p6g_R 1p87_R 2aw7_R ...
Probab=25.14 E-value=18 Score=21.51 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=1.5
Q ss_pred hcCCCccccccccccccc
Q 045853 154 LDDHSTCPLCRGRVRRIA 171 (184)
Q Consensus 154 l~~~~~CP~CR~~i~~~~ 171 (184)
..++..||+|+..+...+
T Consensus 5 ~~r~k~C~fc~~~~~~iD 22 (75)
T 3i1m_R 5 FRRRKFCRFTAEGVQEID 22 (75)
T ss_dssp ---------------CCS
T ss_pred CCCCCCCCcccCCCCcCC
Confidence 446678999998776544
No 234
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=24.59 E-value=19 Score=16.56 Aligned_cols=9 Identities=33% Similarity=1.213 Sum_probs=5.8
Q ss_pred ccccccccc
Q 045853 159 TCPLCRGRV 167 (184)
Q Consensus 159 ~CP~CR~~i 167 (184)
.||+|.+.+
T Consensus 8 qcpvcqq~m 16 (29)
T 3vhs_A 8 QCPVCQQMM 16 (29)
T ss_dssp ECTTTCCEE
T ss_pred eChHHHHhC
Confidence 477776644
No 235
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=24.50 E-value=25 Score=21.31 Aligned_cols=12 Identities=25% Similarity=0.772 Sum_probs=7.0
Q ss_pred ccccCcccccCC
Q 045853 121 TCVICLEEFRDG 132 (184)
Q Consensus 121 ~C~ICl~~~~~~ 132 (184)
.|+.|-.++..+
T Consensus 4 ~CP~C~~~l~~~ 15 (81)
T 2jrp_A 4 TCPVCHHALERN 15 (81)
T ss_dssp CCSSSCSCCEEC
T ss_pred CCCCCCCccccC
Confidence 466666665543
No 236
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=24.04 E-value=19 Score=22.86 Aligned_cols=6 Identities=33% Similarity=1.110 Sum_probs=3.2
Q ss_pred ccccCc
Q 045853 121 TCVICL 126 (184)
Q Consensus 121 ~C~ICl 126 (184)
.||+|-
T Consensus 49 ~CPvCg 54 (112)
T 1l8d_A 49 KCPVCG 54 (112)
T ss_dssp ECTTTC
T ss_pred CCCCCC
Confidence 465553
No 237
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=23.36 E-value=1.4e+02 Score=23.78 Aligned_cols=9 Identities=22% Similarity=0.493 Sum_probs=4.4
Q ss_pred cccCccccc
Q 045853 122 CVICLEEFR 130 (184)
Q Consensus 122 C~ICl~~~~ 130 (184)
-.||+-.|.
T Consensus 417 F~icWlP~~ 425 (500)
T 2rh1_A 417 FTLCWLPFF 425 (500)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555543
No 238
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=21.64 E-value=57 Score=25.60 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=24.1
Q ss_pred CCcccccCcccccC-CccceeecCCCccccHhhHHH
Q 045853 118 KTSTCVICLEEFRD-GDECKVRSKCNHIFHQTCMDD 152 (184)
Q Consensus 118 ~~~~C~ICl~~~~~-~~~~~~l~~C~H~FH~~Ci~~ 152 (184)
....|..|-..+.. ...--....||.++|..|...
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 44679999988752 222233457999999999753
No 239
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=21.60 E-value=11 Score=23.64 Aligned_cols=18 Identities=17% Similarity=-0.043 Sum_probs=12.8
Q ss_pred HHhcCCCccccccccccc
Q 045853 152 DWLDDHSTCPLCRGRVRR 169 (184)
Q Consensus 152 ~Wl~~~~~CP~CR~~i~~ 169 (184)
.||..--.||.||.++.-
T Consensus 3 ~~LLdILaCP~cK~pL~l 20 (97)
T 2k5r_A 3 RKLLHLLCSPDTRQPLSL 20 (97)
T ss_dssp TTTCSSCCCCTTSSCCEE
T ss_pred hHHhhheECCCCCCcccc
Confidence 355555679999998754
No 240
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=20.37 E-value=55 Score=17.28 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=14.1
Q ss_pred ccccCcc-cc--cCCccceeecCCCccccH
Q 045853 121 TCVICLE-EF--RDGDECKVRSKCNHIFHQ 147 (184)
Q Consensus 121 ~C~ICl~-~~--~~~~~~~~l~~C~H~FH~ 147 (184)
.|+.|-. ++ ..+..-.+...||++|-.
T Consensus 7 ~CP~C~~~~l~~d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 7 VCPACESAELIYDPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp SCTTTSCCCEEEETTTTEEEESSSCCBCCC
T ss_pred eCcCCCCcceEEcCCCCeEECcccCCcccc
Confidence 5888855 32 222222445567766643
Done!