Your job contains 1 sequence.
>045854
MENKDQSGGSSSCSSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSL
LSSVKCPLCKTENVSIIHGYDGTYFQRNYISQIFGDSFFFSKAHRYRLQSYYTEPGILND
VFNVSRYWKSRKYLQSNQWLQSWLRREIQAVMQEEDVEIVVHHILGVVDSFLKRNKQRCQ
MGTPETKEEDFKALVSDAARPFLMARTDRFVNEMQLFLASALNIEAYDAVYMQRLGWNTP
RVTMESGEGETSGQTPVIPYLHIFDEDSDGTD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 045854
(272 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2096264 - symbol:AT3G05250 species:3702 "Arabi... 788 2.3e-78 1
UNIPROTKB|F1N329 - symbol:TOPORS "Uncharacterized protein... 141 1.9e-11 2
UNIPROTKB|Q9NS56 - symbol:TOPORS "E3 ubiquitin-protein li... 138 3.9e-11 2
UNIPROTKB|F1PHI0 - symbol:TOPORS "Uncharacterized protein... 137 4.1e-11 2
UNIPROTKB|F1SE69 - symbol:TOPORS "Uncharacterized protein... 136 6.9e-11 2
RGD|1305270 - symbol:Topors "topoisomerase I binding, arg... 141 7.0e-11 2
MGI|MGI:2146189 - symbol:Topors "topoisomerase I binding,... 140 9.3e-11 2
DICTYBASE|DDB_G0281183 - symbol:DDB_G0281183 "RING zinc f... 128 1.5e-10 2
ZFIN|ZDB-GENE-030131-6401 - symbol:toporsa "topoisomerase... 119 7.8e-10 2
TAIR|locus:2064905 - symbol:AT2G39100 species:3702 "Arabi... 125 9.3e-09 2
UNIPROTKB|H0Y340 - symbol:RFWD2 "E3 ubiquitin-protein lig... 105 2.0e-05 1
FB|FBgn0034410 - symbol:Topors "Topoisomerase I-interacti... 110 3.3e-05 2
UNIPROTKB|F8W6K1 - symbol:SCAF11 "Protein SCAF11" species... 91 0.00070 1
>TAIR|locus:2096264 [details] [associations]
symbol:AT3G05250 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008270 "zinc ion
binding" evidence=IEA;ISS] [GO:0007165 "signal transduction"
evidence=RCA] [GO:0009755 "hormone-mediated signaling pathway"
evidence=RCA] InterPro:IPR001841 InterPro:IPR018957 PROSITE:PS50089
SMART:SM00184 Pfam:PF00097 Prosite:PS00518 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907 HSSP:P28990
EMBL:BT008778 EMBL:DQ086839 EMBL:AK117770 IPI:IPI00545519
RefSeq:NP_187176.2 UniGene:At.40705 ProteinModelPortal:Q8GYA2
SMR:Q8GYA2 IntAct:Q8GYA2 PRIDE:Q8GYA2 EnsemblPlants:AT3G05250.1
GeneID:819689 KEGG:ath:AT3G05250 TAIR:At3g05250 eggNOG:NOG245952
HOGENOM:HOG000083472 InParanoid:Q8GYA2 OMA:PLCKTEN PhylomeDB:Q8GYA2
ProtClustDB:CLSN2690722 Genevestigator:Q8GYA2 Uniprot:Q8GYA2
Length = 278
Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
Identities = 153/259 (59%), Positives = 193/259 (74%)
Query: 19 NPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIH 78
+PCPICLG + +SYLD CFHKFC+NCI W KVV+SK S SSV CPLCKTEN+SIIH
Sbjct: 20 DPCPICLGQFLRESYLDTCFHKFCFNCIKQWIKVVSSKASKQRSSVTCPLCKTENLSIIH 79
Query: 79 GYDGTYFQRNYISQIFGDSFFFSKAHRYRLQSYYTEPGILNDVFNVSRYWKSRKYLQSNQ 138
YDG F+R+YI D F +K RYRLQ YYTE G L DVF+V+R+WK +K+LQ N+
Sbjct: 80 NYDGCSFERHYIDPNIPDGFVLTKEQRYRLQCYYTESGFLADVFDVARFWKLQKFLQPNR 139
Query: 139 WLQSWLRREIQAVMQEEDVEIVVHHILGVVDSFLKRNKQRCQMGTPE---TKEEDFKALV 195
L++WLRRE+QA+MQEEDV+IV+HH++GV++SF KR KQR + T T +E FKA+V
Sbjct: 140 CLEAWLRRELQALMQEEDVDIVLHHLVGVMESFCKRIKQRRKQETRSAETTNQEQFKAVV 199
Query: 196 SDAARPFLMARTDRFVNEMQLFLASALNIEAYDAVYMQRLGWNTPR-VTMESGEGET--- 251
S+AARPF+MARTDRFV+E++LFLA+ LN+EAYDA+Y Q L N R + S E E
Sbjct: 200 SEAARPFVMARTDRFVDELELFLAAGLNLEAYDAIYKQGLEGNNRREIGAASEEREEVEE 259
Query: 252 -SGQTPVIPYLHIFDEDSD 269
+ +T V PYL IF+EDSD
Sbjct: 260 HNVRTRVTPYLFIFEEDSD 278
>UNIPROTKB|F1N329 [details] [associations]
symbol:TOPORS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0044547 "DNA topoisomerase
binding" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0042127 "regulation of
cell proliferation" evidence=IEA] [GO:0036064 "cilium basal body"
evidence=IEA] [GO:0032391 "photoreceptor connecting cilium"
evidence=IEA] [GO:0019789 "SUMO ligase activity" evidence=IEA]
[GO:0016925 "protein sumoylation" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0016605 "PML body" evidence=IEA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IEA] [GO:0006513 "protein monoubiquitination"
evidence=IEA] [GO:0005814 "centriole" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0003823
"antigen binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000930 "gamma-tubulin complex" evidence=IEA]
[GO:0000922 "spindle pole" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0043015 "gamma-tubulin binding" evidence=IDA] [GO:0070936
"protein K48-linked ubiquitination" evidence=IEA] [GO:0051457
"maintenance of protein location in nucleus" evidence=IEA]
[GO:0051443 "positive regulation of ubiquitin-protein ligase
activity" evidence=IEA] InterPro:IPR001841 PROSITE:PS50089
SMART:SM00184 Prosite:PS00518 GO:GO:0005813 GO:GO:0045893
GO:GO:0008630 GO:GO:0043161 GO:GO:0005814 GO:GO:0003823
GO:GO:0046872 GO:GO:0003677 GO:GO:0016607 GO:GO:0016605
GO:GO:0008270 GO:GO:0042127 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000922 GO:GO:0000930 GO:GO:0051457
InterPro:IPR017907 GO:GO:0070936 GO:GO:0032391 GO:GO:0051443
GO:GO:0043015 GO:GO:0016925 GO:GO:0006513 GO:GO:0036064
GO:GO:0019789 GeneTree:ENSGT00530000064170 OMA:DIINFRR
EMBL:DAAA02021989 IPI:IPI00713224 UniGene:Bt.56498
Ensembl:ENSBTAT00000048966 NextBio:20873711 ArrayExpress:F1N329
Uniprot:F1N329
Length = 1100
Score = 141 (54.7 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 31/94 (32%), Positives = 45/94 (47%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGY 80
CPICL SYLD+C HKFC+ C+ W+K + +CPLCK SI H
Sbjct: 166 CPICLDRFDNVSYLDRCLHKFCFRCVQEWSK----------NKAECPLCKQPFDSIFHSV 215
Query: 81 DGTYFQRNYISQ-IFGDSFFFSKAHRYRLQSYYT 113
+ Y+ + + SF + R+R ++ T
Sbjct: 216 RAEDDFKEYVLRPSYNGSFATPEVRRFRYRTTMT 249
Score = 90 (36.7 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 192 KALVSDAARPFLMARTDRFVNEMQLFLASALNIEAYDAVYMQRLGWNTPRVTMESGEGET 251
+A VSD RPFL+ RT+ F++E F S N+ A+D Q ++ P + E G
Sbjct: 398 QAFVSDL-RPFLLNRTEHFIHEFISFARSPFNMAAFD----QHANYDCPAPSYEEGSHSD 452
Query: 252 SGQTPVIP 259
S + P
Sbjct: 453 SSVITISP 460
Score = 42 (19.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 175 NKQRCQMGTP-ETKEEDFKALVSDAARPFLMA-RTDR 209
NK RC GT +K+E+ +++ + R + R DR
Sbjct: 611 NKGRCDSGTKINSKKEEKRSISLSSLRDLSSSLRGDR 647
>UNIPROTKB|Q9NS56 [details] [associations]
symbol:TOPORS "E3 ubiquitin-protein ligase Topors"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0042127 "regulation of cell proliferation"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0044547 "DNA topoisomerase binding" evidence=IPI]
[GO:0006351 "transcription, DNA-dependent" evidence=NAS]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003823 "antigen
binding" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0051457 "maintenance of protein location in nucleus"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IMP] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=IMP;IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0019789 "SUMO ligase activity" evidence=IMP;IDA]
[GO:0016925 "protein sumoylation" evidence=IMP;IDA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IDA] [GO:0016605 "PML body" evidence=IDA]
[GO:0034504 "protein localization to nucleus" evidence=IMP]
[GO:0051443 "positive regulation of ubiquitin-protein ligase
activity" evidence=IDA] [GO:0070936 "protein K48-linked
ubiquitination" evidence=IDA] [GO:0006513 "protein
monoubiquitination" evidence=IDA] [GO:0032391 "photoreceptor
connecting cilium" evidence=IDA] [GO:0005868 "cytoplasmic dynein
complex" evidence=TAS] [GO:0036064 "cilium basal body"
evidence=IDA] [GO:0030496 "midbody" evidence=TAS] [GO:0010842
"retina layer formation" evidence=ISS] [GO:0035845 "photoreceptor
cell outer segment organization" evidence=ISS] [GO:0046548 "retinal
rod cell development" evidence=ISS] [GO:0046549 "retinal cone cell
development" evidence=ISS] [GO:0043066 "negative regulation of
apoptotic process" evidence=ISS] [GO:0000922 "spindle pole"
evidence=IDA] [GO:0000930 "gamma-tubulin complex" evidence=IDA]
[GO:0005814 "centriole" evidence=IDA] InterPro:IPR001841
PROSITE:PS50089 SMART:SM00184 Prosite:PS00518 GO:GO:0045893
GO:GO:0043066 GO:GO:0008630 GO:GO:0043161 GO:GO:0005814
GO:GO:0003823 GO:GO:0046872 GO:GO:0003677 GO:GO:0016607
GO:GO:0016605 GO:GO:0008270 GO:GO:0006351 Orphanet:791
GO:GO:0042127 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0035845
GO:GO:0010842 GO:GO:0004842 GO:GO:0030496 GO:GO:0000922
GO:GO:0046548 GO:GO:0000930 GO:GO:0051457 InterPro:IPR017907
GO:GO:0070936 GO:GO:0032391 GO:GO:0051443 GO:GO:0016925
GO:GO:0006513 GO:GO:0046549 GO:GO:0036064 GO:GO:0019789
EMBL:AL353671 CTD:10210 eggNOG:NOG244178 KO:K10631 ChiTaRS:TOPORS
EMBL:AF098300 EMBL:AB045732 EMBL:AB045733 EMBL:BC060884 EMBL:U82939
IPI:IPI00396077 IPI:IPI00643426 RefSeq:NP_001182551.1
RefSeq:NP_005793.2 UniGene:Hs.589962 ProteinModelPortal:Q9NS56
SMR:Q9NS56 IntAct:Q9NS56 MINT:MINT-94004 STRING:Q9NS56
PhosphoSite:Q9NS56 DMDM:74752935 PaxDb:Q9NS56 PRIDE:Q9NS56
Ensembl:ENST00000360538 Ensembl:ENST00000379858 GeneID:10210
KEGG:hsa:10210 UCSC:uc003zrb.3 UCSC:uc003zrc.3
GeneCards:GC09M032496 HGNC:HGNC:21653 MIM:609507 MIM:609923
neXtProt:NX_Q9NS56 PharmGKB:PA134979531 HOGENOM:HOG000231723
HOVERGEN:HBG080410 InParanoid:Q9NS56 OMA:DIINFRR OrthoDB:EOG47H5PC
PhylomeDB:Q9NS56 GenomeRNAi:10210 NextBio:38656 Bgee:Q9NS56
CleanEx:HS_TOPORS Genevestigator:Q9NS56 GermOnline:ENSG00000197579
Uniprot:Q9NS56
Length = 1045
Score = 138 (53.6 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 30/93 (32%), Positives = 44/93 (47%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGY 80
CPICL SYLD+C HKFC+ C+ W+K + +CPLCK SI H
Sbjct: 103 CPICLDRFDNVSYLDRCLHKFCFRCVQEWSK----------NKAECPLCKQPFDSIFHSV 152
Query: 81 DGTYFQRNYISQIFGDSFFFSKAHRYRLQSYYT 113
+ Y+ + + F + R+R ++ T
Sbjct: 153 RAEDDFKEYVLRPSYNGSFVTPDRRFRYRTTLT 185
Score = 90 (36.7 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 192 KALVSDAARPFLMARTDRFVNEMQLFLASALNIEAYDAVYMQRLGWNTPRVTMESGEGET 251
+A VSD RPFL+ RT+ F++E F S N+ A+D Q ++ P + E G
Sbjct: 334 QAFVSDL-RPFLLNRTEHFIHEFISFARSPFNMAAFD----QHANYDCPAPSYEEGSHSD 388
Query: 252 SGQTPVIP 259
S + P
Sbjct: 389 SSVITISP 396
>UNIPROTKB|F1PHI0 [details] [associations]
symbol:TOPORS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0036064 "cilium basal body" evidence=IDA]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001841 PROSITE:PS50089
SMART:SM00184 Prosite:PS00518 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 GO:GO:0036064 CTD:10210
GeneTree:ENSGT00530000064170 KO:K10631 OMA:DIINFRR
EMBL:AAEX03007933 EMBL:AAEX03007934 RefSeq:XP_003639434.1
Ensembl:ENSCAFT00000002842 GeneID:481577 KEGG:cfa:481577
Uniprot:F1PHI0
Length = 1043
Score = 137 (53.3 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 31/94 (32%), Positives = 44/94 (46%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGY 80
CPICL SYLD+C HKFC+ C+ W+K + +CPLCK SI H
Sbjct: 103 CPICLDRFDNVSYLDRCLHKFCFRCVQEWSK----------NKAECPLCKQPFDSIFHSV 152
Query: 81 DGTYFQRNYISQ-IFGDSFFFSKAHRYRLQSYYT 113
+ Y+ + + SF R+R ++ T
Sbjct: 153 RAEDDFKEYVLRPSYNGSFATPDVPRFRYRTTMT 186
Score = 91 (37.1 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 32/120 (26%), Positives = 52/120 (43%)
Query: 140 LQSWLRREIQAVMQEEDVEIVVHHILGVVDSFLKRNKQRCQMGTPETKEEDFKALVSDAA 199
L WL+RE+ + ++ +V + N R + E++E VSD
Sbjct: 297 LVPWLKRELTVLFGAHG------SLVNIVQHIIMSNVTRYDL---ESRE-----FVSDL- 341
Query: 200 RPFLMARTDRFVNEMQLFLASALNIEAYDAVYMQRLGWNTPRVTMESGEGETSGQTPVIP 259
RPFL+ RT+ F++E F S N+ A+D Q ++ P + E G S + P
Sbjct: 342 RPFLLNRTEHFIHEFISFARSPFNMAAFD----QHANYDCPAPSYEEGSHSDSSVITISP 397
>UNIPROTKB|F1SE69 [details] [associations]
symbol:TOPORS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032391 "photoreceptor connecting cilium" evidence=IDA]
[GO:0070936 "protein K48-linked ubiquitination" evidence=IEA]
[GO:0051457 "maintenance of protein location in nucleus"
evidence=IEA] [GO:0051443 "positive regulation of ubiquitin-protein
ligase activity" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0044547 "DNA
topoisomerase binding" evidence=IEA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0042127 "regulation of cell proliferation" evidence=IEA]
[GO:0036064 "cilium basal body" evidence=IEA] [GO:0019789 "SUMO
ligase activity" evidence=IEA] [GO:0016925 "protein sumoylation"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0016605
"PML body" evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IEA] [GO:0006513
"protein monoubiquitination" evidence=IEA] [GO:0005814 "centriole"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0003823 "antigen binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000930 "gamma-tubulin
complex" evidence=IEA] [GO:0000922 "spindle pole" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
PROSITE:PS50089 SMART:SM00184 Prosite:PS00518 GO:GO:0045893
GO:GO:0008630 GO:GO:0043161 GO:GO:0005814 GO:GO:0003823
GO:GO:0046872 GO:GO:0003677 GO:GO:0016607 GO:GO:0016605
GO:GO:0008270 GO:GO:0042127 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000922 GO:GO:0000930 GO:GO:0051457
InterPro:IPR017907 GO:GO:0070936 GO:GO:0032391 GO:GO:0051443
GO:GO:0016925 GO:GO:0006513 GO:GO:0036064 GO:GO:0019789
GeneTree:ENSGT00530000064170 OMA:DIINFRR EMBL:CU928691
Ensembl:ENSSSCT00000012046 Uniprot:F1SE69
Length = 1049
Score = 136 (52.9 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 34/107 (31%), Positives = 49/107 (45%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGY 80
CPICL SYLD+C HKFC+ C+ W+K + +CPLCK SI H
Sbjct: 106 CPICLDRFDNVSYLDRCLHKFCFRCVQEWSK----------NKAECPLCKQPFDSIFHSV 155
Query: 81 DGTYFQRNYISQ-IFGDSFFFSKAHRYRLQSYYTEPGILNDVFNVSR 126
+ Y+ + SF R+R ++ T + V++ SR
Sbjct: 156 RAEDDFKEYVLRPSHNGSFATPDVRRFRYRTTMTRERSAS-VYSPSR 201
Score = 90 (36.7 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 192 KALVSDAARPFLMARTDRFVNEMQLFLASALNIEAYDAVYMQRLGWNTPRVTMESGEGET 251
+A VSD RPFL+ RT+ F++E F S N+ A+D Q ++ P + E G
Sbjct: 338 QAFVSDL-RPFLLNRTEHFIHEFISFARSPFNMAAFD----QHANYDCPAPSYEEGSHSD 392
Query: 252 SGQTPVIP 259
S + P
Sbjct: 393 SSVITISP 400
>RGD|1305270 [details] [associations]
symbol:Topors "topoisomerase I binding, arginine/serine-rich, E3
ubiquitin protein ligase" species:10116 "Rattus norvegicus"
[GO:0000922 "spindle pole" evidence=IEA;ISO] [GO:0000930
"gamma-tubulin complex" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0003823 "antigen binding" evidence=IEA;ISO]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005814 "centriole"
evidence=IEA;ISO] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0006513 "protein
monoubiquitination" evidence=IEA;ISO] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA;ISO] [GO:0016605 "PML body"
evidence=IEA;ISO] [GO:0016607 "nuclear speck" evidence=IEA;ISO]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0016925 "protein
sumoylation" evidence=IEA;ISO] [GO:0019789 "SUMO ligase activity"
evidence=IEA;ISO] [GO:0032391 "photoreceptor connecting cilium"
evidence=IEA;ISO] [GO:0034504 "protein localization to nucleus"
evidence=ISO] [GO:0036064 "cilium basal body" evidence=IEA;ISO]
[GO:0042127 "regulation of cell proliferation" evidence=IEA;ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=IEA;ISO] [GO:0044547 "DNA topoisomerase binding"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA;ISO] [GO:0051443
"positive regulation of ubiquitin-protein ligase activity"
evidence=IEA;ISO] [GO:0051457 "maintenance of protein location in
nucleus" evidence=IEA;ISO] [GO:0070936 "protein K48-linked
ubiquitination" evidence=IEA;ISO] InterPro:IPR001841
PROSITE:PS50089 SMART:SM00184 RGD:1305270 Prosite:PS00518
GO:GO:0045893 GO:GO:0008630 GO:GO:0043161 GO:GO:0005814
GO:GO:0003823 GO:GO:0046872 GO:GO:0003677 GO:GO:0016607
GO:GO:0016605 GO:GO:0008270 GO:GO:0042127 GO:GO:0016853
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 EMBL:CH473962
GO:GO:0000922 GO:GO:0000930 GO:GO:0051457 InterPro:IPR017907
GO:GO:0070936 GO:GO:0032391 GO:GO:0051443 GO:GO:0016925
GO:GO:0006513 GO:GO:0036064 GO:GO:0019789 CTD:10210
GeneTree:ENSGT00530000064170 KO:K10631 OrthoDB:EOG47H5PC
IPI:IPI00950361 RefSeq:NP_001102128.1 UniGene:Rn.55605
Ensembl:ENSRNOT00000066081 GeneID:362501 KEGG:rno:362501
UCSC:RGD:1305270 NextBio:680139 Uniprot:D3ZZE0
Length = 1042
Score = 141 (54.7 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 31/94 (32%), Positives = 45/94 (47%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGY 80
CPICL SYLD+C HKFC+ C+ W+K + +CPLCK SI H
Sbjct: 104 CPICLDRFDNVSYLDRCLHKFCFRCVQEWSK----------NKAECPLCKQPFDSIFHSV 153
Query: 81 DGTYFQRNYISQ-IFGDSFFFSKAHRYRLQSYYT 113
+ Y+ + + SF + R+R ++ T
Sbjct: 154 RAEDDFKEYVLRPSYNGSFTAPEVRRFRYRTTMT 187
Score = 84 (34.6 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 192 KALVSDAARPFLMARTDRFVNEMQLFLASALNIEAYDAVYMQRLGWNTPRVTMESGEGET 251
+A VSD RPFL+ RT+ F++E F S N+ A+D Q ++ P + E ++
Sbjct: 336 QAFVSDL-RPFLLNRTEHFIHEFISFARSPFNMAAFD----QHANYDCPPSSEEGSRSDS 390
Query: 252 S 252
S
Sbjct: 391 S 391
>MGI|MGI:2146189 [details] [associations]
symbol:Topors "topoisomerase I binding,
arginine/serine-rich" species:10090 "Mus musculus" [GO:0000922
"spindle pole" evidence=ISO] [GO:0000930 "gamma-tubulin complex"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003823
"antigen binding" evidence=ISO] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005814
"centriole" evidence=ISO] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0006513 "protein
monoubiquitination" evidence=ISO] [GO:0006915 "apoptotic process"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=ISO;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=ISO] [GO:0016605 "PML body" evidence=ISO]
[GO:0016607 "nuclear speck" evidence=ISO] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0016925 "protein sumoylation" evidence=ISO] [GO:0019789 "SUMO
ligase activity" evidence=ISO] [GO:0032391 "photoreceptor
connecting cilium" evidence=ISO;IDA] [GO:0034504 "protein
localization to nucleus" evidence=ISO] [GO:0036064 "cilium basal
body" evidence=ISO;IDA] [GO:0042127 "regulation of cell
proliferation" evidence=IDA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0044547 "DNA topoisomerase binding" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IGI]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051443 "positive
regulation of ubiquitin-protein ligase activity" evidence=ISO]
[GO:0051457 "maintenance of protein location in nucleus"
evidence=ISO] [GO:0070936 "protein K48-linked ubiquitination"
evidence=ISO] InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184
MGI:MGI:2146189 Prosite:PS00518 GO:GO:0045893 GO:GO:0008630
GO:GO:0043161 GO:GO:0005814 GO:GO:0003823 GO:GO:0046872
GO:GO:0003677 GO:GO:0016607 GO:GO:0016605 GO:GO:0008270
GO:GO:0042127 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0000922 GO:GO:0000930 GO:GO:0051457 InterPro:IPR017907
GO:GO:0070936 GO:GO:0032391 GO:GO:0051443 GO:GO:0034504
GO:GO:0016925 GO:GO:0006513 GO:GO:0036064 GO:GO:0019789 CTD:10210
eggNOG:NOG244178 GeneTree:ENSGT00530000064170 KO:K10631
HOVERGEN:HBG080410 OMA:DIINFRR OrthoDB:EOG47H5PC EMBL:AB072395
EMBL:AB104865 EMBL:BC037141 EMBL:BC040797 EMBL:AK044564
EMBL:AK134075 EMBL:AK140250 EMBL:AK143025 EMBL:AK153743
IPI:IPI00330897 RefSeq:NP_598858.2 UniGene:Mm.251548
ProteinModelPortal:Q80Z37 SMR:Q80Z37 MINT:MINT-1789728
STRING:Q80Z37 PhosphoSite:Q80Z37 PRIDE:Q80Z37
Ensembl:ENSMUST00000042575 GeneID:106021 KEGG:mmu:106021
InParanoid:Q80Z37 NextBio:358016 Bgee:Q80Z37 CleanEx:MM_TOPORS
Genevestigator:Q80Z37 GermOnline:ENSMUSG00000036822 Uniprot:Q80Z37
Length = 1033
Score = 140 (54.3 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 31/94 (32%), Positives = 45/94 (47%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGY 80
CPICL SYLD+C HKFC+ C+ W+K + +CPLCK SI H
Sbjct: 104 CPICLDRFDNVSYLDRCLHKFCFRCVQEWSK----------NKAECPLCKQPFDSIFHSV 153
Query: 81 DGTYFQRNYISQ-IFGDSFFFSKAHRYRLQSYYT 113
+ Y+ + + SF + R+R ++ T
Sbjct: 154 RAEDDFKEYVLRPSYNGSFTNPEVRRFRYRTTMT 187
Score = 84 (34.6 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 192 KALVSDAARPFLMARTDRFVNEMQLFLASALNIEAYDAVYMQRLGWNTPRVTMESGEGET 251
+A VSD RPFL+ RT+ F++E F S N+ A+D Q ++ P + E ++
Sbjct: 336 QAFVSDL-RPFLLNRTEHFIHEFISFARSPFNMAAFD----QHANYDCPPSSEEGSRSDS 390
Query: 252 S 252
S
Sbjct: 391 S 391
>DICTYBASE|DDB_G0281183 [details] [associations]
symbol:DDB_G0281183 "RING zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR002483
Pfam:PF01480 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
dictyBase:DDB_G0281183 Prosite:PS00518 GO:GO:0046872
EMBL:AAFI02000040 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 eggNOG:NOG244178
RefSeq:XP_640869.1 ProteinModelPortal:Q54UA7
EnsemblProtists:DDB0233761 GeneID:8622925 KEGG:ddi:DDB_G0281183
InParanoid:Q54UA7 OMA:PWIKREL Uniprot:Q54UA7
Length = 548
Score = 128 (50.1 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGY 80
C ICL P ++LD CFH+FC+ CI+ W+++ + +CPLCK+E S+I+
Sbjct: 100 CSICLSPFENLTFLDICFHQFCFVCILQWSEL----------NQRCPLCKSEYHSLIYQV 149
Query: 81 -DGTYFQRNYISQ 92
T +QR +I Q
Sbjct: 150 KSNTDYQR-FIIQ 161
Score = 89 (36.4 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 27/97 (27%), Positives = 50/97 (51%)
Query: 140 LQSWLRREIQAVMQEEDVEIVVHHILGVVDSFLKRNKQRCQMGTPETKEEDFKALVSDAA 199
+Q W++RE+Q+++Q D EI+ IL ++ + + + ET E+
Sbjct: 258 VQPWIKRELQSILQTSDTEILEDLILELLKKYNIIHDSKIH----ETLEK---------- 303
Query: 200 RPFLMARTDRFVNEMQLFLASALNIEAYDA--VYMQR 234
FL +T+ F++E+ F S NI+ YD+ +Y +R
Sbjct: 304 --FLFQKTNLFIHELICFATSPYNIKTYDSKVIYDKR 338
>ZFIN|ZDB-GENE-030131-6401 [details] [associations]
symbol:toporsa "topoisomerase I binding,
arginine/serine-rich a" species:7955 "Danio rerio" [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0010842 "retina layer
formation" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184
Prosite:PS00518 ZFIN:ZDB-GENE-030131-6401 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 eggNOG:NOG244178 OrthoDB:EOG47H5PC EMBL:BC125819
IPI:IPI00512796 UniGene:Dr.22874 InParanoid:A0JMC0
ArrayExpress:A0JMC0 Uniprot:A0JMC0
Length = 846
Score = 119 (46.9 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 25/58 (43%), Positives = 29/58 (50%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIH 78
CPICL SYLD C HKFC+ CI W+K + +CPLCK S H
Sbjct: 28 CPICLDHFKNISYLDVCLHKFCFCCIHEWSK----------NKAECPLCKQPFNSFYH 75
Score = 97 (39.2 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 195 VSDAARPFLMARTDRFVNEMQLFLASALNIEAYDAVYMQRLGWNTPRVTMESGEGETS 252
V RPFL++ T+ F++E F S N+EAYD QR ++ PR + ES E S
Sbjct: 255 VQHELRPFLLSHTEHFLHEFLSFARSPFNMEAYD----QRAVYDLPRPSGESSSSENS 308
>TAIR|locus:2064905 [details] [associations]
symbol:AT2G39100 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 Prosite:PS00518 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 UniGene:At.37212
InterPro:IPR017907 HSSP:P28990 eggNOG:NOG244178 EMBL:AY065197
EMBL:AY081521 IPI:IPI00536162 RefSeq:NP_850310.1 UniGene:At.20141
ProteinModelPortal:Q8VZ73 SMR:Q8VZ73 IntAct:Q8VZ73 PaxDb:Q8VZ73
PRIDE:Q8VZ73 EnsemblPlants:AT2G39100.1 GeneID:818496
KEGG:ath:AT2G39100 TAIR:At2g39100 HOGENOM:HOG000093087
InParanoid:Q8VZ73 OMA:FWHELRC PhylomeDB:Q8VZ73
ProtClustDB:CLSN2680124 Genevestigator:Q8VZ73 Uniprot:Q8VZ73
Length = 296
Score = 125 (49.1 bits), Expect = 9.3e-09, Sum P(2) = 9.3e-09
Identities = 33/91 (36%), Positives = 49/91 (53%)
Query: 140 LQSWLRREIQAVMQEEDVEIVVHHILGVVDSFLKRNKQRCQMGTPETKEEDFKALVSDAA 199
++ W+RRE+QAV+ + D ++VH + L+R R Q G ED VS +
Sbjct: 204 IEPWIRRELQAVLGDPDPSVIVHFASALFIKRLERENNR-QTGQTGMLVEDE---VS-SL 258
Query: 200 RPFLMARTDRFVNEMQLFLASALNIEAYDAV 230
R FL + D F +E++ F S L +E YDAV
Sbjct: 259 RKFLSDKVDIFWHELRCFAESILTMETYDAV 289
Score = 66 (28.3 bits), Expect = 9.3e-09, Sum P(2) = 9.3e-09
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 21 CPICLGPVVED---SYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKT 71
CPICL + E + + C H +C CI W+ K + CPLC T
Sbjct: 39 CPICLENLTERRSAAVITVCKHGYCLACIRKWSSF---KRN-------CPLCNT 82
>UNIPROTKB|H0Y340 [details] [associations]
symbol:RFWD2 "E3 ubiquitin-protein ligase RFWD2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 EMBL:AL359265 EMBL:AL162736
EMBL:AL513329 EMBL:AL590723 HGNC:HGNC:17440 ChiTaRS:RFWD2
Ensembl:ENST00000367667 Uniprot:H0Y340
Length = 113
Score = 105 (42.0 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 23/60 (38%), Positives = 31/60 (51%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGY 80
CPIC ++E++Y+ KC H FCY CI H SL + +CP C +I H Y
Sbjct: 41 CPICFD-MIEEAYMTKCGHSFCYKCI----------HQSLEDNNRCPKCNYVVDNIDHLY 89
>FB|FBgn0034410 [details] [associations]
symbol:Topors "Topoisomerase I-interacting protein"
species:7227 "Drosophila melanogaster" [GO:0044547 "DNA
topoisomerase binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IDA] [GO:0005652 "nuclear lamina" evidence=IDA]
[GO:0005700 "polytene chromosome" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0007095 "mitotic G2 DNA damage
checkpoint" evidence=IGI] InterPro:IPR001841 InterPro:IPR018957
PROSITE:PS50089 SMART:SM00184 Pfam:PF00097 Prosite:PS00518
EMBL:AE013599 GO:GO:0007095 GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 GO:GO:0016568 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0005700 GO:GO:0000209
InterPro:IPR017907 GO:GO:0042787 GO:GO:0006997 GO:GO:0005521
GO:GO:0005652 EMBL:AY122186 RefSeq:NP_611388.1 UniGene:Dm.10778
ProteinModelPortal:Q9V8P9 SMR:Q9V8P9 IntAct:Q9V8P9 STRING:Q9V8P9
PaxDb:Q9V8P9 PRIDE:Q9V8P9 EnsemblMetazoa:FBtr0086570
EnsemblMetazoa:FBtr0331977 GeneID:37188 KEGG:dme:Dmel_CG15104
CTD:10210 FlyBase:FBgn0034410 eggNOG:NOG244178
GeneTree:ENSGT00530000064170 InParanoid:Q9V8P9 KO:K10631
OMA:FIHELFN OrthoDB:EOG42V6ZJ PhylomeDB:Q9V8P9 ChiTaRS:TOPORS
GenomeRNAi:37188 NextBio:802385 Bgee:Q9V8P9 GermOnline:CG15104
Uniprot:Q9V8P9
Length = 1038
Score = 110 (43.8 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 18 PNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSII 77
PN C ICL + D C H+FC+ C+ W+K+ +CPLCK +II
Sbjct: 100 PN-CAICLSRCRRKCFTDSCMHQFCFKCLCEWSKI----------KPECPLCKQPFRTII 148
Query: 78 H 78
H
Sbjct: 149 H 149
Score = 64 (27.6 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 41/191 (21%), Positives = 78/191 (40%)
Query: 84 YFQRNYISQIFGDSFFFSKAHRYRLQSYYTEPGILNDVFNVSRYWKSRKYLQSNQW---L 140
Y+Q + + G + + Y + Y P + + V R W +R Y + L
Sbjct: 238 YYQHDQDASTSGSLSQLWRRYVYD-RKLYALP-VSDSVTGHFREWSARFYRNNPAQIHRL 295
Query: 141 QSWLRREIQAVMQEEDVEIVVHHILGVVDSFLKRNKQRCQMGTPETKEEDFKALVSDAAR 200
W+ R+I +++ + V+ ++ ++ L +G P F+ +S
Sbjct: 296 MPWIHRDIMCLLR--NAAHSVNTVMTLMSDLLPMTSL---LG-PT-----FRRRLS---- 340
Query: 201 PFLMARTDRFVNEMQLFLASALNIEAYDAV--YMQRLGWNTPRVTMESGEGETSGQTPVI 258
P+L RT F++E+ F S +I YD V Y R+ ++ E ++S +
Sbjct: 341 PYLGERTSHFIHELFNFARSPYDINGYDHVVQYSARVAEEVEVDLLDMVETQSSNGDDL- 399
Query: 259 PYLHIFDEDSD 269
L + D D+D
Sbjct: 400 -NLEVGDSDAD 409
>UNIPROTKB|F8W6K1 [details] [associations]
symbol:SCAF11 "Protein SCAF11" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 Prosite:PS00518
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 EMBL:AC000015 HGNC:HGNC:10784 ChiTaRS:SCAF11
EMBL:AC084878 IPI:IPI00852713 ProteinModelPortal:F8W6K1 SMR:F8W6K1
Ensembl:ENST00000266589 ArrayExpress:F8W6K1 Bgee:F8W6K1
Uniprot:F8W6K1
Length = 118
Score = 91 (37.1 bits), Expect = 0.00070, P = 0.00070
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 2 ENKDQXXXXXXXXXENPNPCPICLGPVVEDS--YLDKCFHKFCYNCIVHWTKVVAS 55
EN D E + CPICL ++E + + C H FC CI+ W + +AS
Sbjct: 39 ENGDNTISTGLLYSE-ADRCPICLNCLLEKEVGFPESCNHVFCMTCILKWAETLAS 93
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.423 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 272 263 0.00091 114 3 11 22 0.44 33
32 0.49 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 13
No. of states in DFA: 616 (65 KB)
Total size of DFA: 233 KB (2127 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.50u 0.10s 23.60t Elapsed: 00:00:01
Total cpu time: 23.50u 0.10s 23.60t Elapsed: 00:00:01
Start: Fri May 10 08:27:28 2013 End: Fri May 10 08:27:29 2013