BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045854
(272 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1
SV=1
Length = 1045
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGY 80
CPICL SYLD+C HKFC+ C+ W+K A +CPLCK SI H
Sbjct: 103 CPICLDRFDNVSYLDRCLHKFCFRCVQEWSKNKA----------ECPLCKQPFDSIFHSV 152
Query: 81 DGTYFQRNYISQIFGDSFFFSKAHRYRLQSYYT 113
+ Y+ + + F + R+R ++ T
Sbjct: 153 RAEDDFKEYVLRPSYNGSFVTPDRRFRYRTTLT 185
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 23/122 (18%)
Query: 140 LQSWLRREIQAVMQEED--VEIVVHHILGVVDSFLKRNKQRCQMGTPETKEEDFKALVSD 197
L WL+RE+ + V IV H I+ V + + + +A VSD
Sbjct: 296 LVPWLKRELTVLFGAHGSLVNIVQHIIMSNVTRY----------------DLESQAFVSD 339
Query: 198 AARPFLMARTDRFVNEMQLFLASALNIEAYDAVYMQRLGWNTPRVTMESGEGETSGQTPV 257
RPFL+ RT+ F++E F S N+ A+D Q ++ P + E G S +
Sbjct: 340 L-RPFLLNRTEHFIHEFISFARSPFNMAAFD----QHANYDCPAPSYEEGSHSDSSVITI 394
Query: 258 IP 259
P
Sbjct: 395 SP 396
>sp|Q80Z37|TOPRS_MOUSE E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1
SV=1
Length = 1033
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGY 80
CPICL SYLD+C HKFC+ C+ W+K A +CPLCK SI H
Sbjct: 104 CPICLDRFDNVSYLDRCLHKFCFRCVQEWSKNKA----------ECPLCKQPFDSIFHSV 153
Query: 81 DGT-YFQRNYISQIFGDSFFFSKAHRYRLQSYYT 113
F+ + + SF + R+R ++ T
Sbjct: 154 RAEDDFKEYVLRPSYNGSFTNPEVRRFRYRTTMT 187
Score = 38.9 bits (89), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 23/115 (20%)
Query: 140 LQSWLRREIQAVMQEED--VEIVVHHILGVVDSFLKRNKQRCQMGTPETKEEDFKALVSD 197
L WL+RE+ + V IV H I+ V + + + +A VSD
Sbjct: 298 LVPWLKRELTVLFGAHGSLVNIVQHIIMSNVTRY----------------DLESQAFVSD 341
Query: 198 AARPFLMARTDRFVNEMQLFLASALNIEAYDAVYMQRLGWNTPRVTMESGEGETS 252
RPFL+ RT+ F++E F S N+ A+D Q ++ P + E ++S
Sbjct: 342 L-RPFLLNRTEHFIHEFISFARSPFNMAAFD----QHANYDCPPSSEEGSRSDSS 391
>sp|P29129|ICP0_SUHVF E3 ubiquitin-protein ligase ICP0 OS=Suid herpesvirus 1 (strain
Indiana-Funkhauser / Becker) GN=EP0 PE=2 SV=1
Length = 410
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGY 80
CPICL ++ C HKFC +CI WT L+S CPLC SI+H
Sbjct: 46 CPICLDVAATEAQTLPCMHKFCLDCIQRWT----------LTSTACPLCNARVTSILHHV 95
Query: 81 D 81
D
Sbjct: 96 D 96
>sp|Q9V8P9|TOPRS_DROME E3 ubiquitin-protein ligase Topors OS=Drosophila melanogaster
GN=Topors PE=1 SV=1
Length = 1038
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 18/81 (22%)
Query: 6 QSGGSSSCSSEN--------PNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKH 57
+ G S+S + EN P C ICL + D C H+FC+ C+ W+K+
Sbjct: 79 EPGTSASAAEENGTVERNSPPPNCAICLSRCRRKCFTDSCMHQFCFKCLCEWSKI----- 133
Query: 58 SSLLSSVKCPLCKTENVSIIH 78
+CPLCK +IIH
Sbjct: 134 -----KPECPLCKQPFRTIIH 149
>sp|P09309|IE61_VZVD E3 ubiquitin-protein ligase IE61 OS=Varicella-zoster virus
(strain Dumas) GN=61 PE=1 SV=1
Length = 467
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 8 GGSSSCSSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCP 67
G S S + N C IC+ V + C H FC+ CI WT +SV+CP
Sbjct: 6 AGGSGTSDASDNTCTICMSTVSDLGKTMPCLHDFCFVCIRAWTS----------TSVQCP 55
Query: 68 LCKTENVSIIH 78
LC+ SI+H
Sbjct: 56 LCRCPVQSILH 66
>sp|P84445|ICP0_EHV1V E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
V592) GN=ICP0 PE=3 SV=1
Length = 532
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGY 80
CPICL S C H FCY CI W + + CPLCK S++H
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIR----------QNPTCPLCKVPVESVVHTI 57
Query: 81 DG-TYFQRNYISQIF 94
+ + F+ +S F
Sbjct: 58 ESDSEFKETKVSVDF 72
>sp|P28990|ICP0_EHV1B E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
Ab4p) GN=63 PE=1 SV=1
Length = 532
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGY 80
CPICL S C H FCY CI W + + CPLCK S++H
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIR----------QNPTCPLCKVPVESVVHTI 57
Query: 81 DG-TYFQRNYISQIF 94
+ + F+ +S F
Sbjct: 58 ESDSEFKETKVSVDF 72
>sp|Q8NHY2|RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1
SV=1
Length = 731
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGY 80
CPIC ++E++Y+ KC H FCY CI H SL + +CP C +I H Y
Sbjct: 136 CPICFD-MIEEAYMTKCGHSFCYKCI----------HQSLEDNNRCPKCNYVVDNIDHLY 184
>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1
SV=2
Length = 733
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGY 80
CPIC ++E++Y+ KC H FCY CI H SL + +CP C +I H Y
Sbjct: 138 CPICFD-MIEEAYMTKCGHSFCYKCI----------HQSLEDNNRCPKCNYVVDNIDHLY 186
>sp|Q09268|YQDA_CAEEL Uncharacterized RING finger protein C32D5.10 OS=Caenorhabditis
elegans GN=C32D5.10 PE=4 SV=2
Length = 610
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKT 71
C +C +++ + L C H+FCY+CIV W +K S CP+CKT
Sbjct: 41 CSVCKNEIIDTTSLSDCCHEFCYDCIVGWL----TKGSGPF----CPMCKT 83
>sp|Q8N5U6|RNF10_HUMAN RING finger protein 10 OS=Homo sapiens GN=RNF10 PE=1 SV=2
Length = 811
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 13 CSSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLC 69
CS E P+ CPICL P + + +C H FC+ CI+H+ + S KCP+C
Sbjct: 218 CSHEVPS-CPICLYPPTA-AKITRCGHIFCWACILHYLSLSEKTWS------KCPIC 266
>sp|Q08E13|RNF10_BOVIN RING finger protein 10 OS=Bos taurus GN=RNF10 PE=2 SV=1
Length = 810
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 13 CSSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLC 69
CS E P+ CPICL P + + +C H FC+ CI+H+ + S KCP+C
Sbjct: 218 CSHEVPS-CPICLYPPTA-AKITRCGHIFCWACILHYLSLSEKTWS------KCPIC 266
>sp|Q5XI59|RNF10_RAT RING finger protein 10 OS=Rattus norvegicus GN=Rnf10 PE=2 SV=1
Length = 802
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 13 CSSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLC 69
CS E P+ CPICL P + + +C H FC+ CI+H+ + S KCP+C
Sbjct: 218 CSHEVPS-CPICLYPPTA-AKITRCGHIFCWACILHYLSLSERTWS------KCPIC 266
>sp|Q3UIW5|RNF10_MOUSE RING finger protein 10 OS=Mus musculus GN=Rnf10 PE=2 SV=2
Length = 804
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 13 CSSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLC 69
CS E P+ CPICL P + + +C H FC+ CI+H+ + S KCP+C
Sbjct: 218 CSHEVPS-CPICLYPPTA-AKITRCGHIFCWACILHYLSLSEKTWS------KCPIC 266
>sp|P43254|COP1_ARATH E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1
PE=1 SV=2
Length = 675
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 14/71 (19%)
Query: 2 ENKDQSGGSSSCSSENPNP---CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHS 58
EN D G S + + + CPIC+ +++D++L C H FCY CI+ +
Sbjct: 30 ENDDGGSGGSEIGAPDLDKDLLCPICM-QIIKDAFLTACGHSFCYMCII----------T 78
Query: 59 SLLSSVKCPLC 69
L + CP C
Sbjct: 79 HLRNKSDCPCC 89
>sp|P29836|ICP0_BHV1K E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.2
(strain K22) GN=BICP0 PE=3 SV=1
Length = 676
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIH 78
C ICL + + C H FC CI W L CPLCK S+IH
Sbjct: 13 CCICLDAITGAARALPCLHAFCLACIRRW----------LEGRPTCPLCKAPVQSLIH 60
>sp|P29128|ICP0_BHV1J E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.1
(strain Jura) GN=BICP0 PE=3 SV=1
Length = 676
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIH 78
C ICL + + C H FC CI W L CPLCK S+IH
Sbjct: 13 CCICLDAITGAARALPCLHAFCLACIRRW----------LEGRPTCPLCKAPVQSLIH 60
>sp|Q32NQ8|RNF10_XENLA RING finger protein 10 OS=Xenopus laevis GN=rnf10 PE=2 SV=1
Length = 756
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 18/98 (18%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGY 80
CPICL P V + + +C H FC+ CI+H+ + S +CP+C + SII
Sbjct: 206 CPICLYPPVA-AKITRCGHIFCWPCILHYLSLSEKDWS------RCPICYS---SII--- 252
Query: 81 DGTYFQRNYISQIFGDSFFFSKAHRYRLQSYYTEPGIL 118
+++ S + ++ +S + +Q E G+L
Sbjct: 253 -----KKDLKSVVATETHLYSVGDKITMQLMRREKGVL 285
>sp|Q06554|IRC20_YEAST Uncharacterized ATP-dependent helicase IRC20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IRC20 PE=1
SV=1
Length = 1556
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 11/50 (22%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCK 70
C ICLG V E + KC H FC +CI+ W + HS KCP+CK
Sbjct: 1239 CSICLGEV-EIGAIIKCGHYFCKSCILTWLRA----HS------KCPICK 1277
>sp|Q5REG4|DTX3_PONAB Probable E3 ubiquitin-protein ligase DTX3 OS=Pongo abelii GN=DTX3
PE=2 SV=1
Length = 347
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLC 69
+ E + CPICLG + L+KC H FC CI +V + CP+C
Sbjct: 157 AEEQESTCPICLGEIQNAKTLEKCRHSFCEGCITRALQVKKA----------CPMC 202
>sp|Q8N9I9|DTX3_HUMAN Probable E3 ubiquitin-protein ligase DTX3 OS=Homo sapiens GN=DTX3
PE=1 SV=2
Length = 347
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLC 69
+ E + CPICLG + L+KC H FC CI +V + CP+C
Sbjct: 157 AEEQESTCPICLGEIQNAKTLEKCRHSFCEGCITRALQVKKA----------CPMC 202
>sp|Q80V91|DTX3_MOUSE Probable E3 ubiquitin-protein ligase DTX3 OS=Mus musculus GN=Dtx3
PE=2 SV=2
Length = 347
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLC 69
+ E CPICLG + L+KC H FC CI +V + CP+C
Sbjct: 157 AEEQETTCPICLGEIQNAKTLEKCRHSFCEGCITRALQVKKA----------CPMC 202
>sp|Q9FKW0|RNG1A_ARATH Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana
GN=RING1A PE=1 SV=2
Length = 522
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCK 70
CPICLG + + + +C H+FC CI S L + +CP C+
Sbjct: 136 CPICLGIIKKTRTVMECLHRFCRECI---------DKSMRLGNNECPACR 176
>sp|Q9WUH5|TRI10_MOUSE Tripartite motif-containing protein 10 OS=Mus musculus GN=Trim10
PE=2 SV=2
Length = 489
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCK 70
CPIC G + E +D C H FC C+ + ++ + LS CPLCK
Sbjct: 16 CPICQGTLREPVTID-CGHNFCRGCLTRYCEIPGPESEESLS---CPLCK 61
>sp|Q8C0E3|TRI47_MOUSE Tripartite motif-containing protein 47 OS=Mus musculus GN=Trim47
PE=2 SV=2
Length = 641
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 17 NPNPCPICLGPVVEDSYLDKCFHKFCYNCI-VHWTKVVASKHSSLLSSVKCPLCK 70
P CPICL P+ E L C H FC C+ W A +CPLC+
Sbjct: 5 GPFSCPICLEPLREPVTL-PCGHNFCLACLGALWPHRSAGGTGGSGGPARCPLCQ 58
>sp|P93471|COP1_PEA E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2
SV=1
Length = 672
Score = 39.7 bits (91), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 11/49 (22%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLC 69
CPIC+ +++D++L C H FCY CI+ + L + CP C
Sbjct: 47 CPICM-QIIKDAFLTACGHSFCYMCII----------THLRNKSDCPCC 84
>sp|P25172|SUZ2_DROME Protein suppressor 2 of zeste OS=Drosophila melanogaster
GN=Su(z)2 PE=2 SV=2
Length = 1368
Score = 39.7 bits (91), Expect = 0.026, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 10/50 (20%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCK 70
C +C G +++ + +D C+H +C +CI+ KH LL +V CP CK
Sbjct: 35 CRLCRGYMIDPTTVDYCYHTYCRSCIL--------KH--LLRAVYCPECK 74
>sp|Q03601|NHL1_CAEEL RING finger protein nhl-1 OS=Caenorhabditis elegans GN=nhl-1 PE=1
SV=2
Length = 974
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 14/71 (19%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE-NVSIIHG 79
CPICL + L C H FCY C+ S +L ++KCP C+ E N+
Sbjct: 43 CPICLDRYKQPKLL-PCQHTFCYPCL-------ESCADTLHRNLKCPECRAEHNIP---- 90
Query: 80 YDGT-YFQRNY 89
YDG FQ NY
Sbjct: 91 YDGVKAFQPNY 101
>sp|O15344|TRI18_HUMAN Midline-1 OS=Homo sapiens GN=MID1 PE=1 SV=1
Length = 667
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCI--VHWTKVVASKHSSLLSSVKCPLCKTENVSIIH 78
CPICL + ED L C H C+NC + + ++ +++ +CP C+
Sbjct: 10 CPICL-ELFEDPLLLPCAHSLCFNCAHRILVSHCATNESVESITAFQCPTCRHVITLSQR 68
Query: 79 GYDGTYFQRNYISQIFGDSF 98
G DG +RN Q D F
Sbjct: 69 GLDG--LKRNVTLQNIIDRF 86
>sp|O60117|YH73_SCHPO Uncharacterized RING finger protein C16G5.03 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC16G5.03 PE=4 SV=1
Length = 268
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 18/118 (15%)
Query: 21 CPICLGPVVEDSYLDKCFH-KFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHG 79
C ICL + L C H +F Y+CI W S+ CP+CK + +G
Sbjct: 21 CVICLQKDGLRAQLSPCGHDQFDYSCICRWMD----------QSLTCPICKRHVDCVFYG 70
Query: 80 YDGTYFQRNYISQIFGDSFFFSKAHRYRLQSYYTEPGI--LNDVFNVSRY-----WKS 130
+ G+ + + +Q G + + R S+ + L D+ V R+ WKS
Sbjct: 71 FHGSSLYKKWYTQSLGSNQYSISRQLLRQPSFSSSENTDRLADLLRVRRFIYQKAWKS 128
>sp|Q99590|SCAFB_HUMAN Protein SCAF11 OS=Homo sapiens GN=SCAF11 PE=1 SV=2
Length = 1463
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 21 CPICLGPVVED--SYLDKCFHKFCYNCIVHWTKVVAS 55
CPICL ++E + + C H FC CI+ W + +AS
Sbjct: 41 CPICLNCLLEKEVGFPESCNHVFCMTCILKWAETLAS 77
>sp|Q7TPQ3|SHPRH_MOUSE E3 ubiquitin-protein ligase SHPRH OS=Mus musculus GN=Shprh PE=1 SV=1
Length = 1674
Score = 38.9 bits (89), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 17 NPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHS--SLLSSVKCPLCK 70
NP PCPIC + + + C H FC C T ++ ++S S SS+KC +C+
Sbjct: 1419 NPEPCPICARQLGKQWAVLTCGHCFCNEC----TSIIIEQYSVGSHRSSIKCAICR 1470
>sp|Q149N8|SHPRH_HUMAN E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1 SV=2
Length = 1683
Score = 38.5 bits (88), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 17 NPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHS--SLLSSVKCPLCK 70
NP PCPIC + + + C H FC CI ++ ++S S SS+KC +C+
Sbjct: 1428 NPEPCPICARQLGKQWAVLTCGHCFCNECI----SIIIEQYSVGSHRSSIKCAICR 1479
>sp|Q9UDY6|TRI10_HUMAN Tripartite motif-containing protein 10 OS=Homo sapiens GN=TRIM10
PE=2 SV=3
Length = 481
Score = 38.5 bits (88), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCK 70
CPIC G + E +D C H FC C+ + ++ L S CPLCK
Sbjct: 16 CPICQGTLREPVTID-CGHNFCRACLTRYCEIPG---PDLEESPTCPLCK 61
>sp|Q7YR32|TRI10_PANTR Tripartite motif-containing protein 10 OS=Pan troglodytes
GN=TRIM10 PE=3 SV=1
Length = 481
Score = 38.5 bits (88), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCK 70
CPIC G + E +D C H FC C+ + ++ L S CPLCK
Sbjct: 16 CPICQGTLREPVTID-CGHNFCRACLTRYCEIPG---PDLEESPTCPLCK 61
>sp|P82458|TRI18_RAT Midline-1 OS=Rattus norvegicus GN=Mid1 PE=2 SV=1
Length = 667
Score = 38.1 bits (87), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCI--VHWTKVVASKHSSLLSSVKCPLCKTENVSIIH 78
CPICL + ED L C H C+NC + + ++ +++ +CP C+
Sbjct: 10 CPICLE-LFEDPLLLPCAHSLCFNCAHRILVSHCATNEPVESINAFQCPTCRHVITLSQR 68
Query: 79 GYDGTYFQRNYISQIFGDSF 98
G DG +RN Q D F
Sbjct: 69 GLDG--LKRNVTLQNIIDRF 86
>sp|O70583|TRI18_MOUSE Midline-1 OS=Mus musculus GN=Mid1 PE=1 SV=2
Length = 680
Score = 38.1 bits (87), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCI--VHWTKVVASKHSSLLSSVKCPLCKTENVSIIH 78
CPICL + ED L C H C+NC + + ++ +++ +CP C+
Sbjct: 10 CPICL-ELFEDPLLLPCAHSLCFNCAHRILVSHCATNEPVESINAFQCPTCRHVITLSQR 68
Query: 79 GYDGTYFQRNYISQIFGDSF 98
G DG +RN Q D F
Sbjct: 69 GLDG--LKRNVTLQNIIDRF 86
>sp|Q5TM55|TRI15_MACMU Tripartite motif-containing protein 15 OS=Macaca mulatta
GN=TRIM15 PE=3 SV=1
Length = 465
Score = 38.1 bits (87), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73
C +C+GP+ ED+ C H FC C+ +++ A +L CPLC+ E
Sbjct: 16 CTLCVGPL-EDAVTAPCGHTFCRLCLPTLSQMGAQSSGKILL---CPLCQEEE 64
>sp|Q9P1Y6|PHRF1_HUMAN PHD and RING finger domain-containing protein 1 OS=Homo sapiens
GN=PHRF1 PE=1 SV=3
Length = 1649
Score = 37.7 bits (86), Expect = 0.079, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 2 ENKDQSGGSSSCSSENPNPCPICLGPVVEDSY--LDKCFHKFCYNCIVHWTK 51
+ K ++ GS + S ++ CPICL + + + C H FC +CIV W+K
Sbjct: 90 QGKLEAAGSFN-SDDDAESCPICLNAFRDQAVGTPENCAHYFCLDCIVEWSK 140
>sp|O17917|RN113_CAEEL RING finger protein 113 homolog OS=Caenorhabditis elegans
GN=rnf-113 PE=2 SV=2
Length = 384
Score = 37.7 bits (86), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
Query: 18 PNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCK--TENVS 75
P C IC P V D + KC H FC C + S S KCP+C+ TEN+
Sbjct: 238 PEDCFICGNPFV-DPIVTKCKHYFCTGCAL----------KSFQKSSKCPICQQNTENIM 286
Query: 76 IIHGYDGTYFQR 87
TY +R
Sbjct: 287 NTAKELLTYLKR 298
>sp|Q9QUS6|TRIM1_MOUSE Probable E3 ubiquitin-protein ligase MID2 OS=Mus musculus GN=Mid2
PE=2 SV=2
Length = 705
Score = 37.7 bits (86), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSL--LSSVKCPLCKTENVSIIH 78
CPICL + ED L C H C++C S S+ +++ +CP C+ +S+ H
Sbjct: 30 CPICLE-LFEDPLLLPCAHSLCFSCAHRILVSSCSSGESIEPITAFQCPTCRYV-ISLNH 87
Query: 79 -GYDGTYFQRNYISQIFGDSF 98
G DG +RN Q D F
Sbjct: 88 RGLDG--LKRNVTLQNIIDRF 106
>sp|Q9VB08|RING1_DROME E3 ubiquitin-protein ligase RING1 OS=Drosophila melanogaster
GN=Sce PE=1 SV=1
Length = 435
Score = 37.7 bits (86), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 11/56 (19%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVK-CPLCKTENVS 75
CPICL + + +C H+FC +CIV ++L S K CP C+ + VS
Sbjct: 46 CPICLDMLKKTMTTKECLHRFCSDCIV----------TALRSGNKECPTCRKKLVS 91
>sp|Q06834|ASR1_YEAST Alcohol-sensitive RING finger protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ASR1 PE=4
SV=2
Length = 288
Score = 37.7 bits (86), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
Query: 21 CPICLGPVVEDSY---LDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSI 76
CPICL E L+ C HKF NCI W K ++KCP+C+ E+ +
Sbjct: 4 CPICLADDQEGEQFGCLNVCGHKFHLNCIREWHKYSI--------NLKCPICRVESTHL 54
>sp|Q8R0K2|TRI31_MOUSE E3 ubiquitin-protein ligase TRIM31 OS=Mus musculus GN=Trim31 PE=1
SV=1
Length = 507
Score = 37.7 bits (86), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 7 SGGSSSCSSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKC 66
+G +C + CPIC+ +++D C H FC CI K ++C
Sbjct: 2 AGQPLACQLQEEVTCPICM-EILQDPVTIDCGHNFCLQCISQVGKTS--------EKIQC 52
Query: 67 PLCK 70
PLCK
Sbjct: 53 PLCK 56
>sp|Q99496|RING2_HUMAN E3 ubiquitin-protein ligase RING2 OS=Homo sapiens GN=RNF2 PE=1
SV=1
Length = 336
Score = 37.7 bits (86), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVK-CPLCKTENVS 75
CPICL + +C H+FC +CI+ ++L S K CP C+ + VS
Sbjct: 51 CPICLDMLKNTMTTKECLHRFCADCII----------TALRSGNKECPTCRKKLVS 96
>sp|Q5R9J5|RING2_PONAB E3 ubiquitin-protein ligase RING2 OS=Pongo abelii GN=RNF2 PE=2
SV=1
Length = 336
Score = 37.7 bits (86), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVK-CPLCKTENVS 75
CPICL + +C H+FC +CI+ ++L S K CP C+ + VS
Sbjct: 51 CPICLDMLKNTMTTKECLHRFCADCII----------TALRSGNKECPTCRKKLVS 96
>sp|Q9CQJ4|RING2_MOUSE E3 ubiquitin-protein ligase RING2 OS=Mus musculus GN=Rnf2 PE=1
SV=1
Length = 336
Score = 37.7 bits (86), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVK-CPLCKTENVS 75
CPICL + +C H+FC +CI+ ++L S K CP C+ + VS
Sbjct: 51 CPICLDMLKNTMTTKECLHRFCADCII----------TALRSGNKECPTCRKKLVS 96
>sp|Q96LD4|TRI47_HUMAN Tripartite motif-containing protein 47 OS=Homo sapiens GN=TRIM47
PE=1 SV=2
Length = 638
Score = 37.7 bits (86), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 17 NPNPCPICLGPVVEDSYLDKCFHKFCYNCI-VHWTKVVASKHSSLLSSVKCPLCKTENVS 75
P CPICL P+ E L C H FC C+ W AS + +CPLC+
Sbjct: 5 GPFSCPICLEPLREPVTL-PCGHNFCLACLGALWPHRGASGAGGPGGAARCPLCQEPFP- 62
Query: 76 IIHGYDGTYFQRNY 89
DG ++N+
Sbjct: 63 -----DGLQLRKNH 71
>sp|Q803I4|RING2_DANRE E3 ubiquitin-protein ligase RING2 OS=Danio rerio GN=rnf2 PE=2
SV=1
Length = 336
Score = 37.7 bits (86), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVK-CPLCKTENVS 75
CPICL + +C H+FC +CI+ ++L S K CP C+ + VS
Sbjct: 51 CPICLDMLKNTMTTKECLHRFCADCII----------TALRSGNKECPTCRKKLVS 96
>sp|Q4KLY4|RING2_RAT E3 ubiquitin-protein ligase RING2 OS=Rattus norvegicus GN=Rnf2
PE=2 SV=1
Length = 308
Score = 37.7 bits (86), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVK-CPLCKTENVS 75
CPICL + +C H+FC +CI+ ++L S K CP C+ + VS
Sbjct: 51 CPICLDMLKNTMTTKECLHRFCADCII----------TALRSGNKECPTCRKKLVS 96
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,452,843
Number of Sequences: 539616
Number of extensions: 4155431
Number of successful extensions: 10952
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 225
Number of HSP's that attempted gapping in prelim test: 10835
Number of HSP's gapped (non-prelim): 322
length of query: 272
length of database: 191,569,459
effective HSP length: 116
effective length of query: 156
effective length of database: 128,974,003
effective search space: 20119944468
effective search space used: 20119944468
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)