Query 045854
Match_columns 272
No_of_seqs 277 out of 1171
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:11:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045854.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045854hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15227 zf-C3HC4_4: zinc fing 99.1 4.8E-11 1E-15 79.3 2.9 42 21-69 1-42 (42)
2 PLN03208 E3 ubiquitin-protein 99.1 1.7E-10 3.7E-15 99.9 5.9 60 14-74 14-79 (193)
3 KOG0823 Predicted E3 ubiquitin 99.0 1.8E-10 3.9E-15 101.7 4.6 52 15-74 44-95 (230)
4 KOG4430 Topoisomerase I-bindin 99.0 3.8E-11 8.1E-16 117.4 0.2 85 138-245 61-147 (553)
5 PF13923 zf-C3HC4_2: Zinc fing 99.0 3E-10 6.6E-15 73.9 3.2 39 21-69 1-39 (39)
6 PHA02929 N1R/p28-like protein; 99.0 4.5E-10 9.8E-15 100.8 5.1 53 16-78 172-231 (238)
7 KOG0317 Predicted E3 ubiquitin 99.0 5.4E-10 1.2E-14 101.4 4.4 50 14-74 235-284 (293)
8 PF13639 zf-RING_2: Ring finge 99.0 3.5E-10 7.5E-15 75.4 2.3 42 19-70 1-44 (44)
9 PF13920 zf-C3HC4_3: Zinc fing 98.9 9.5E-10 2.1E-14 75.4 3.5 47 18-75 2-49 (50)
10 PHA02926 zinc finger-like prot 98.9 1.5E-09 3.2E-14 95.6 4.5 60 15-78 167-234 (242)
11 PF00097 zf-C3HC4: Zinc finger 98.8 2.4E-09 5.1E-14 70.1 3.3 41 21-69 1-41 (41)
12 KOG0320 Predicted E3 ubiquitin 98.8 2.8E-09 6E-14 90.7 4.2 49 16-74 129-178 (187)
13 cd00162 RING RING-finger (Real 98.8 4.5E-09 9.7E-14 68.6 4.1 44 20-72 1-44 (45)
14 smart00504 Ubox Modified RING 98.7 2E-08 4.2E-13 71.4 4.3 44 19-73 2-45 (63)
15 PF12678 zf-rbx1: RING-H2 zinc 98.7 1.9E-08 4.2E-13 74.5 3.5 43 18-70 19-73 (73)
16 TIGR00599 rad18 DNA repair pro 98.6 2.4E-08 5.1E-13 95.7 4.5 51 13-74 21-71 (397)
17 KOG2164 Predicted E3 ubiquitin 98.6 2.1E-08 4.6E-13 97.2 3.4 52 18-75 186-237 (513)
18 smart00184 RING Ring finger. E 98.5 1.4E-07 3.1E-12 59.2 3.8 39 21-69 1-39 (39)
19 PF14634 zf-RING_5: zinc-RING 98.5 1.4E-07 3E-12 63.0 3.0 42 20-71 1-44 (44)
20 PF13445 zf-RING_UBOX: RING-ty 98.4 1.3E-07 2.8E-12 63.1 2.0 39 21-67 1-43 (43)
21 COG5574 PEX10 RING-finger-cont 98.4 3E-07 6.4E-12 82.8 3.9 48 16-73 213-261 (271)
22 KOG4628 Predicted E3 ubiquitin 98.4 2.4E-07 5.2E-12 87.1 3.4 47 19-74 230-278 (348)
23 KOG0287 Postreplication repair 98.3 1.4E-07 3.1E-12 87.4 1.2 48 16-74 21-68 (442)
24 PF12861 zf-Apc11: Anaphase-pr 98.3 4.2E-07 9.1E-12 69.0 3.3 49 18-73 21-81 (85)
25 KOG2660 Locus-specific chromos 98.3 6.6E-08 1.4E-12 89.4 -2.1 90 15-117 12-103 (331)
26 COG5432 RAD18 RING-finger-cont 98.3 2.9E-07 6.4E-12 83.9 1.7 48 15-73 22-69 (391)
27 KOG0978 E3 ubiquitin ligase in 98.2 3.8E-07 8.1E-12 92.3 1.8 47 17-73 642-688 (698)
28 KOG2879 Predicted E3 ubiquitin 98.2 1.2E-06 2.7E-11 79.2 4.6 60 8-75 229-288 (298)
29 PF04564 U-box: U-box domain; 98.2 6.8E-07 1.5E-11 66.1 2.3 48 17-74 3-50 (73)
30 KOG4172 Predicted E3 ubiquitin 98.2 3.7E-07 8E-12 63.4 0.3 54 18-81 7-61 (62)
31 KOG2177 Predicted E3 ubiquitin 98.2 5.5E-07 1.2E-11 79.8 1.4 48 13-71 8-55 (386)
32 COG5243 HRD1 HRD ubiquitin lig 98.2 1.4E-06 3.1E-11 81.8 4.1 47 16-73 285-344 (491)
33 TIGR00570 cdk7 CDK-activating 98.1 2.1E-06 4.6E-11 79.6 4.1 48 18-74 3-54 (309)
34 PF14835 zf-RING_6: zf-RING of 98.1 5.3E-07 1.1E-11 64.8 -0.4 44 17-72 6-49 (65)
35 KOG0311 Predicted E3 ubiquitin 98.0 4.8E-07 1.1E-11 84.4 -1.8 50 17-75 42-91 (381)
36 PF01480 PWI: PWI domain; Int 98.0 4.7E-06 1E-10 62.3 3.3 68 139-220 3-70 (77)
37 COG5540 RING-finger-containing 98.0 4.4E-06 9.5E-11 76.7 3.5 49 17-74 322-372 (374)
38 KOG0802 E3 ubiquitin ligase [P 98.0 2.8E-06 6.1E-11 84.9 2.3 46 16-72 289-339 (543)
39 KOG4265 Predicted E3 ubiquitin 97.9 8.7E-06 1.9E-10 76.3 4.2 51 16-77 288-339 (349)
40 KOG0824 Predicted E3 ubiquitin 97.9 4.7E-06 1E-10 76.5 2.0 50 18-77 7-56 (324)
41 PF11789 zf-Nse: Zinc-finger o 97.6 2.5E-05 5.5E-10 55.2 1.2 45 16-68 9-53 (57)
42 KOG1039 Predicted E3 ubiquitin 97.5 6.3E-05 1.4E-09 71.1 3.0 61 16-79 159-226 (344)
43 COG5194 APC11 Component of SCF 97.4 0.00012 2.5E-09 54.8 2.4 34 31-74 48-81 (88)
44 KOG1493 Anaphase-promoting com 97.3 3.1E-05 6.8E-10 57.4 -0.9 37 31-74 45-81 (84)
45 KOG0297 TNF receptor-associate 97.3 0.00015 3.2E-09 69.9 3.0 51 14-74 17-67 (391)
46 KOG4159 Predicted E3 ubiquitin 97.3 0.00016 3.5E-09 69.6 2.8 49 15-74 81-129 (398)
47 KOG0804 Cytoplasmic Zn-finger 97.2 0.00016 3.4E-09 69.7 2.3 48 13-72 170-220 (493)
48 KOG0828 Predicted E3 ubiquitin 97.1 0.00033 7.1E-09 68.3 2.5 51 15-74 568-634 (636)
49 KOG0825 PHD Zn-finger protein 97.0 0.0002 4.4E-09 72.9 0.6 52 17-78 122-175 (1134)
50 COG5152 Uncharacterized conser 97.0 0.00037 7.9E-09 60.8 2.1 47 16-73 194-240 (259)
51 KOG4275 Predicted E3 ubiquitin 97.0 8.4E-05 1.8E-09 68.1 -2.0 49 17-80 299-348 (350)
52 PF11793 FANCL_C: FANCL C-term 97.0 0.00031 6.7E-09 51.6 1.2 57 18-74 2-66 (70)
53 KOG1571 Predicted E3 ubiquitin 96.9 0.00047 1E-08 64.9 2.3 52 14-79 301-352 (355)
54 KOG4692 Predicted E3 ubiquitin 96.9 0.00055 1.2E-08 64.4 2.6 48 16-74 420-467 (489)
55 COG5219 Uncharacterized conser 96.9 0.00037 8E-09 72.4 1.3 52 16-75 1467-1524(1525)
56 KOG1785 Tyrosine kinase negati 96.8 0.0005 1.1E-08 65.5 1.6 47 20-75 371-417 (563)
57 KOG2930 SCF ubiquitin ligase, 96.8 0.0004 8.8E-09 54.4 0.8 45 18-72 46-106 (114)
58 KOG4430 Topoisomerase I-bindin 96.8 0.00035 7.5E-09 69.2 0.1 253 17-270 34-318 (553)
59 KOG1813 Predicted E3 ubiquitin 96.7 0.00065 1.4E-08 62.4 1.0 48 18-76 241-288 (313)
60 PF07800 DUF1644: Protein of u 96.6 0.0038 8.3E-08 52.7 4.9 62 17-78 1-95 (162)
61 KOG1645 RING-finger-containing 96.4 0.0025 5.4E-08 61.0 3.3 47 18-72 4-54 (463)
62 COG5222 Uncharacterized conser 96.3 0.0021 4.5E-08 59.3 2.1 44 19-71 275-318 (427)
63 KOG1002 Nucleotide excision re 96.3 0.002 4.4E-08 63.5 2.0 53 16-74 534-586 (791)
64 KOG1734 Predicted RING-contain 96.3 0.0016 3.5E-08 59.2 1.2 50 15-72 221-279 (328)
65 smart00744 RINGv The RING-vari 96.2 0.0056 1.2E-07 41.8 3.4 42 20-70 1-49 (49)
66 KOG0826 Predicted E3 ubiquitin 96.2 0.0041 8.9E-08 58.0 3.3 47 16-72 298-344 (357)
67 KOG0827 Predicted E3 ubiquitin 96.1 0.0029 6.4E-08 60.2 1.9 46 18-70 4-52 (465)
68 PF02891 zf-MIZ: MIZ/SP-RING z 95.8 0.0083 1.8E-07 41.1 2.7 48 19-72 3-50 (50)
69 KOG4739 Uncharacterized protei 95.8 0.0024 5.2E-08 57.2 -0.1 42 20-73 5-47 (233)
70 smart00311 PWI PWI, domain in 95.4 0.053 1.2E-06 40.0 6.1 63 138-219 7-69 (74)
71 PF05290 Baculo_IE-1: Baculovi 95.1 0.019 4.1E-07 47.2 2.8 53 17-76 79-134 (140)
72 PF04641 Rtf2: Rtf2 RING-finge 95.0 0.024 5.2E-07 51.7 3.7 50 14-74 109-161 (260)
73 COG5236 Uncharacterized conser 95.0 0.037 7.9E-07 52.3 4.8 55 13-76 56-110 (493)
74 KOG3039 Uncharacterized conser 94.7 0.025 5.3E-07 51.1 2.8 48 16-73 219-269 (303)
75 PF14570 zf-RING_4: RING/Ubox 94.5 0.023 4.9E-07 38.8 1.7 44 21-73 1-47 (48)
76 KOG1001 Helicase-like transcri 93.9 0.019 4.1E-07 59.1 0.6 45 19-73 455-499 (674)
77 PHA03096 p28-like protein; Pro 93.7 0.031 6.7E-07 51.8 1.4 51 19-73 179-236 (284)
78 KOG3002 Zn finger protein [Gen 93.6 0.054 1.2E-06 50.5 2.8 48 16-76 46-93 (299)
79 PF14447 Prok-RING_4: Prokaryo 93.3 0.037 7.9E-07 38.7 1.0 44 18-74 7-50 (55)
80 KOG2932 E3 ubiquitin ligase in 93.2 0.025 5.3E-07 52.6 -0.1 45 19-75 91-135 (389)
81 KOG2146 Splicing coactivator S 93.1 0.14 3E-06 47.3 4.6 66 138-220 43-109 (354)
82 KOG3800 Predicted E3 ubiquitin 92.7 0.09 1.9E-06 48.5 2.8 45 20-73 2-50 (300)
83 KOG4185 Predicted E3 ubiquitin 92.6 0.079 1.7E-06 48.8 2.3 46 18-73 3-54 (296)
84 KOG3161 Predicted E3 ubiquitin 92.0 0.052 1.1E-06 54.9 0.4 51 17-81 10-64 (861)
85 COG5175 MOT2 Transcriptional r 91.8 0.12 2.7E-06 48.7 2.7 51 14-73 10-63 (480)
86 PHA02862 5L protein; Provision 91.8 0.21 4.6E-06 41.7 3.7 45 19-73 3-52 (156)
87 PF10272 Tmpp129: Putative tra 91.7 0.24 5.1E-06 47.4 4.5 34 40-73 314-350 (358)
88 PF10367 Vps39_2: Vacuolar sor 91.7 0.07 1.5E-06 41.2 0.8 32 16-47 76-108 (109)
89 KOG4367 Predicted Zn-finger pr 91.5 0.094 2E-06 50.9 1.6 35 16-51 2-36 (699)
90 KOG0298 DEAD box-containing he 91.4 0.053 1.2E-06 58.6 -0.2 47 16-72 1151-1197(1394)
91 PHA02825 LAP/PHD finger-like p 91.0 0.37 8E-06 40.9 4.5 48 16-73 6-58 (162)
92 KOG2114 Vacuolar assembly/sort 90.5 0.11 2.4E-06 54.0 1.1 44 18-74 840-883 (933)
93 KOG1941 Acetylcholine receptor 90.2 0.1 2.2E-06 50.1 0.5 49 18-74 365-416 (518)
94 KOG1428 Inhibitor of type V ad 90.1 0.23 5E-06 54.6 3.0 56 14-74 3482-3544(3738)
95 KOG1814 Predicted E3 ubiquitin 89.9 0.23 4.9E-06 48.0 2.5 53 18-72 184-238 (445)
96 KOG4445 Uncharacterized conser 89.7 0.13 2.8E-06 47.8 0.7 64 17-80 114-192 (368)
97 KOG3970 Predicted E3 ubiquitin 89.5 0.45 9.8E-06 42.6 4.0 62 16-80 48-111 (299)
98 KOG3579 Predicted E3 ubiquitin 89.3 0.22 4.8E-06 46.0 1.9 36 16-52 266-305 (352)
99 KOG1100 Predicted E3 ubiquitin 88.6 0.15 3.3E-06 45.1 0.4 43 21-78 161-204 (207)
100 KOG2034 Vacuolar sorting prote 88.2 0.25 5.5E-06 51.7 1.7 37 15-51 814-851 (911)
101 COG5220 TFB3 Cdk activating ki 87.7 0.14 3E-06 46.2 -0.5 48 17-73 9-63 (314)
102 KOG1952 Transcription factor N 87.5 0.4 8.6E-06 50.1 2.6 54 17-73 190-246 (950)
103 PF12906 RINGv: RING-variant d 87.3 0.53 1.2E-05 31.7 2.3 41 21-69 1-47 (47)
104 KOG3039 Uncharacterized conser 87.0 0.57 1.2E-05 42.5 3.0 38 13-51 38-75 (303)
105 KOG1812 Predicted E3 ubiquitin 86.5 0.48 1E-05 45.8 2.5 48 17-68 145-195 (384)
106 KOG2817 Predicted E3 ubiquitin 86.0 0.55 1.2E-05 45.1 2.5 49 17-72 333-383 (394)
107 PF05883 Baculo_RING: Baculovi 84.2 0.5 1.1E-05 39.0 1.2 34 18-51 26-67 (134)
108 KOG0825 PHD Zn-finger protein 83.5 0.89 1.9E-05 47.3 2.8 61 18-82 96-162 (1134)
109 KOG4362 Transcriptional regula 83.0 0.24 5.2E-06 50.8 -1.4 49 17-73 20-68 (684)
110 KOG3268 Predicted E3 ubiquitin 81.9 1.4 3.1E-05 38.2 3.1 59 18-76 165-230 (234)
111 KOG3053 Uncharacterized conser 77.7 2.4 5.1E-05 38.8 3.3 64 13-78 15-86 (293)
112 COG5183 SSM4 Protein involved 75.9 4.3 9.2E-05 42.7 4.9 49 16-73 10-65 (1175)
113 KOG1815 Predicted E3 ubiquitin 75.6 2.5 5.5E-05 41.4 3.1 55 16-73 68-125 (444)
114 PF08746 zf-RING-like: RING-li 71.6 3.1 6.8E-05 27.4 1.9 41 21-69 1-43 (43)
115 KOG1940 Zn-finger protein [Gen 71.4 2.5 5.5E-05 39.0 1.9 44 18-71 158-204 (276)
116 KOG3899 Uncharacterized conser 69.6 2.2 4.8E-05 39.7 1.1 37 37-73 325-364 (381)
117 PF05605 zf-Di19: Drought indu 66.2 6.4 0.00014 26.9 2.7 39 18-72 2-40 (54)
118 KOG0824 Predicted E3 ubiquitin 64.9 2.2 4.8E-05 39.8 0.1 52 16-77 103-154 (324)
119 PF03854 zf-P11: P-11 zinc fin 63.6 2.3 4.9E-05 29.0 -0.0 43 20-75 4-47 (50)
120 PF07191 zinc-ribbons_6: zinc- 63.2 0.31 6.6E-06 35.8 -4.6 42 19-76 2-43 (70)
121 PRK09499 sifB secreted effecto 62.9 6 0.00013 36.3 2.5 40 184-224 18-61 (316)
122 PF06906 DUF1272: Protein of u 59.3 8.2 0.00018 27.2 2.1 42 20-73 7-51 (57)
123 COG5109 Uncharacterized conser 58.3 5.8 0.00012 37.4 1.6 48 17-71 335-384 (396)
124 PF06844 DUF1244: Protein of u 56.8 7.1 0.00015 28.4 1.5 15 40-54 11-25 (68)
125 KOG4718 Non-SMC (structural ma 56.6 6.9 0.00015 34.8 1.7 48 16-73 179-226 (235)
126 PF10571 UPF0547: Uncharacteri 54.7 7.8 0.00017 22.9 1.2 8 21-28 3-10 (26)
127 KOG2169 Zn-finger transcriptio 53.8 11 0.00024 38.8 3.0 51 17-73 305-355 (636)
128 KOG2979 Protein involved in DN 53.4 7 0.00015 35.7 1.3 47 18-72 176-222 (262)
129 KOG3842 Adaptor protein Pellin 53.4 17 0.00037 34.4 3.8 38 35-73 376-413 (429)
130 PF10497 zf-4CXXC_R1: Zinc-fin 50.9 29 0.00063 27.3 4.3 33 38-71 37-69 (105)
131 KOG2135 Proteins containing th 47.8 25 0.00054 34.9 4.1 70 138-222 7-76 (526)
132 KOG1812 Predicted E3 ubiquitin 47.1 9.5 0.00021 36.9 1.2 34 17-51 305-343 (384)
133 KOG3799 Rab3 effector RIM1 and 45.8 16 0.00035 30.4 2.2 54 14-72 61-116 (169)
134 COG5460 Uncharacterized conser 42.3 31 0.00068 25.8 3.0 33 138-170 16-48 (82)
135 PF10235 Cript: Microtubule-as 41.2 25 0.00055 27.1 2.5 36 18-73 44-79 (90)
136 COG3813 Uncharacterized protei 40.4 18 0.0004 26.8 1.5 24 38-73 28-51 (84)
137 smart00647 IBR In Between Ring 39.1 4.2 9.2E-05 28.0 -2.0 16 36-51 45-60 (64)
138 KOG2068 MOT2 transcription fac 38.5 27 0.00058 33.1 2.7 46 18-73 249-297 (327)
139 PLN02638 cellulose synthase A 37.5 45 0.00097 36.5 4.5 50 17-75 16-71 (1079)
140 KOG3113 Uncharacterized conser 37.3 38 0.00082 31.1 3.4 46 16-73 109-157 (293)
141 PRK03564 formate dehydrogenase 36.5 18 0.00039 34.0 1.3 46 16-71 185-234 (309)
142 smart00064 FYVE Protein presen 36.4 32 0.0007 24.2 2.3 34 18-51 10-46 (68)
143 PF10083 DUF2321: Uncharacteri 36.4 25 0.00054 29.8 1.9 26 38-76 27-52 (158)
144 PF07975 C1_4: TFIIH C1-like d 35.8 23 0.00049 24.4 1.3 26 35-70 25-50 (51)
145 TIGR01562 FdhE formate dehydro 35.5 16 0.00034 34.3 0.7 47 16-72 182-233 (305)
146 PF04216 FdhE: Protein involve 35.0 7.3 0.00016 35.9 -1.6 47 16-72 170-220 (290)
147 cd00065 FYVE FYVE domain; Zinc 34.6 29 0.00064 23.4 1.8 33 19-51 3-38 (57)
148 PF14169 YdjO: Cold-inducible 34.1 24 0.00053 25.1 1.3 17 58-74 34-50 (59)
149 COG3492 Uncharacterized protei 33.8 23 0.00049 27.5 1.2 15 40-54 42-56 (104)
150 KOG0309 Conserved WD40 repeat- 33.7 25 0.00053 37.1 1.8 33 20-52 1030-1063(1081)
151 PF01023 S_100: S-100/ICaBP ty 33.6 1.2E+02 0.0025 20.0 4.5 20 185-204 24-43 (44)
152 PF10146 zf-C4H2: Zinc finger- 33.4 27 0.00059 31.4 1.8 22 41-72 196-217 (230)
153 TIGR00622 ssl1 transcription f 32.8 50 0.0011 26.5 3.1 42 19-70 56-110 (112)
154 PF09888 DUF2115: Uncharacteri 32.7 98 0.0021 26.3 5.0 86 138-224 23-111 (163)
155 PF04710 Pellino: Pellino; In 32.6 15 0.00032 35.7 0.0 38 36-74 364-401 (416)
156 KOG2253 U1 snRNP complex, subu 32.4 86 0.0019 32.4 5.3 63 137-218 594-656 (668)
157 PF04710 Pellino: Pellino; In 30.3 17 0.00037 35.3 0.0 35 31-72 303-337 (416)
158 KOG2231 Predicted E3 ubiquitin 29.9 58 0.0013 33.9 3.7 51 20-75 2-53 (669)
159 PF01363 FYVE: FYVE zinc finge 29.6 12 0.00025 26.6 -1.0 32 17-48 8-42 (69)
160 KOG4185 Predicted E3 ubiquitin 29.6 8.7 0.00019 35.2 -2.1 45 19-72 208-265 (296)
161 COG4306 Uncharacterized protei 29.4 32 0.00069 28.3 1.4 23 40-75 29-51 (160)
162 KOG2113 Predicted RNA binding 28.9 34 0.00074 32.4 1.7 47 17-76 342-389 (394)
163 PLN02400 cellulose synthase 28.7 64 0.0014 35.4 3.9 50 18-76 36-91 (1085)
164 COG0068 HypF Hydrogenase matur 28.2 37 0.0008 35.5 2.0 56 15-73 98-183 (750)
165 KOG4451 Uncharacterized conser 27.5 37 0.00081 30.7 1.6 23 40-72 250-272 (286)
166 PF04423 Rad50_zn_hook: Rad50 27.0 23 0.0005 24.1 0.2 10 65-74 22-31 (54)
167 PLN02189 cellulose synthase 26.6 67 0.0015 35.1 3.6 49 18-75 34-88 (1040)
168 PF13719 zinc_ribbon_5: zinc-r 26.3 23 0.00049 22.4 0.1 13 61-73 23-35 (37)
169 KOG1609 Protein involved in mR 25.5 48 0.001 30.1 2.1 48 18-73 78-133 (323)
170 PF01485 IBR: IBR domain; Int 24.5 7.9 0.00017 26.5 -2.6 31 19-49 19-58 (64)
171 PLN02436 cellulose synthase A 23.6 1E+02 0.0022 33.9 4.3 48 18-74 36-89 (1094)
172 PLN02195 cellulose synthase A 23.5 78 0.0017 34.4 3.4 47 19-74 7-59 (977)
173 PF14569 zf-UDP: Zinc-binding 21.7 1.1E+02 0.0023 23.1 2.9 48 18-74 9-62 (80)
174 PF09795 Atg31: Autophagy-rela 21.4 46 0.001 28.3 1.0 45 221-269 3-51 (160)
175 PRK01343 zinc-binding protein; 21.2 68 0.0015 22.6 1.7 13 62-74 8-20 (57)
176 KOG1815 Predicted E3 ubiquitin 21.2 33 0.00072 33.6 0.1 18 33-50 180-197 (444)
177 COG4647 AcxC Acetone carboxyla 20.9 48 0.0011 27.4 1.0 21 23-44 62-82 (165)
178 COG5627 MMS21 DNA repair prote 20.4 45 0.00098 30.3 0.8 34 18-51 189-222 (275)
No 1
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.10 E-value=4.8e-11 Score=79.25 Aligned_cols=42 Identities=38% Similarity=0.808 Sum_probs=30.8
Q ss_pred ccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCC
Q 045854 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLC 69 (272)
Q Consensus 21 CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlC 69 (272)
||||++.+.+|+.+ +|||+||..||..|++. ..+....||.|
T Consensus 1 CpiC~~~~~~Pv~l-~CGH~FC~~Cl~~~~~~------~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSL-PCGHSFCRSCLERLWKE------PSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE--SSSSEEEHHHHHHHHCC------SSSST---SSS
T ss_pred CCccchhhCCcccc-CCcCHHHHHHHHHHHHc------cCCcCCCCcCC
Confidence 89999999999887 79999999999999873 12223789988
No 2
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.08 E-value=1.7e-10 Score=99.93 Aligned_cols=60 Identities=32% Similarity=0.674 Sum_probs=44.7
Q ss_pred CCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcc------cCCCCCCCCCCCCcccc
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKH------SSLLSSVKCPLCKTENV 74 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~------~~~~~~~~CPlCr~~~~ 74 (272)
...+...|+||++.+.+|+.+ +|||.||..||..|+...+... ...+....||+||..+.
T Consensus 14 ~~~~~~~CpICld~~~dPVvT-~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVT-LCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred cCCCccCCccCCCcCCCcEEc-CCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 444578999999999999665 7999999999999987421100 01234579999999883
No 3
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.8e-10 Score=101.66 Aligned_cols=52 Identities=31% Similarity=0.711 Sum_probs=44.1
Q ss_pred CCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 15 SENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 15 ~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
......|.|||+..++|++. .|||-||..||.+|+... .....||+||+.++
T Consensus 44 ~~~~FdCNICLd~akdPVvT-lCGHLFCWpClyqWl~~~-------~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVT-LCGHLFCWPCLYQWLQTR-------PNSKECPVCKAEVS 95 (230)
T ss_pred CCCceeeeeeccccCCCEEe-ecccceehHHHHHHHhhc-------CCCeeCCccccccc
Confidence 56678999999999999665 699999999999999852 24578999999873
No 4
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=99.04 E-value=3.8e-11 Score=117.42 Aligned_cols=85 Identities=22% Similarity=0.411 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHhHhhccc--chHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhccccccchhhhHHHHHH
Q 045854 138 QWLQSWLRREIQAVMQEE--DVEIVVHHILGVVDSFLKRNKQRCQMGTPETKEEDFKALVSDAARPFLMARTDRFVNEMQ 215 (272)
Q Consensus 138 ~Rl~~Wl~REL~~l~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~~~~fl~~~t~~F~HEl~ 215 (272)
||+++|++|||.+++++. ++..|.+.|++++ .|+... ...|. ..+++||+..|+||+||++
T Consensus 61 hr~~~W~~r~i~~l~~t~~s~v~~~~~~~~~~~----~~~~l~---------~~~f~----~~l~~fl~~~t~hfihe~~ 123 (553)
T KOG4430|consen 61 HRLMQWKKRDISVLNRTRGSDVNDLQDLIMNLL----PRLSLE---------SLAFR----RELEEFLYACTDHFIHELI 123 (553)
T ss_pred cccccchhhHHHHHhhhccccccceeehhcccc----cchhhc---------cHHHH----HHHHHHHhhccchhhhhhh
Confidence 899999999999998755 4566655555443 333322 34554 4469999999999999999
Q ss_pred HHHhCCCChHHHHHHhhhccCCCCCCcccc
Q 045854 216 LFLASALNIEAYDAVYMQRLGWNTPRVTME 245 (272)
Q Consensus 216 ~Fa~Sp~~~~~yD~~~~~~~~~~~~~~~~~ 245 (272)
+|++|||+|.+||+ ++++|++...
T Consensus 124 ~farSpft~~~~~~------~~~~~~~~~~ 147 (553)
T KOG4430|consen 124 NFARSPFTMNGYKR------NCSCSTRRLT 147 (553)
T ss_pred ccccCccchhhHhc------ccCcchhhhh
Confidence 99999999999996 5666654444
No 5
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.99 E-value=3e-10 Score=73.94 Aligned_cols=39 Identities=38% Similarity=1.025 Sum_probs=33.7
Q ss_pred ccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCC
Q 045854 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLC 69 (272)
Q Consensus 21 CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlC 69 (272)
|+||++.+.+|+++.+|||.||..|+.+|++. ..+||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~----------~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK----------NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC----------TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC----------cCCCcCC
Confidence 89999999999778899999999999999983 4799987
No 6
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.99 E-value=4.5e-10 Score=100.76 Aligned_cols=53 Identities=36% Similarity=0.894 Sum_probs=43.4
Q ss_pred CCCCcccccccCCCCc-------eeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccceee
Q 045854 16 ENPNPCPICLGPVVED-------SYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIH 78 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p-------~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~~ 78 (272)
+.+..|+||++.+.++ ..+.+|+|.||..||.+|++. ...||+||.++.+++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~----------~~tCPlCR~~~~~v~~ 231 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE----------KNTCPVCRTPFISVIK 231 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc----------CCCCCCCCCEeeEEee
Confidence 3467899999987653 256689999999999999983 5799999998877654
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=5.4e-10 Score=101.42 Aligned_cols=50 Identities=32% Similarity=0.842 Sum_probs=41.8
Q ss_pred CCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
.......|.+|++...+|. .+||||.||..||.+|... ...||+||..+.
T Consensus 235 i~~a~~kC~LCLe~~~~pS-aTpCGHiFCWsCI~~w~~e----------k~eCPlCR~~~~ 284 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPS-ATPCGHIFCWSCILEWCSE----------KAECPLCREKFQ 284 (293)
T ss_pred CCCCCCceEEEecCCCCCC-cCcCcchHHHHHHHHHHcc----------ccCCCcccccCC
Confidence 3445688999999999994 4599999999999999884 457999998753
No 8
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.95 E-value=3.5e-10 Score=75.44 Aligned_cols=42 Identities=38% Similarity=0.873 Sum_probs=33.9
Q ss_pred CcccccccCCC--CceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCC
Q 045854 19 NPCPICLGPVV--EDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCK 70 (272)
Q Consensus 19 ~~CpICl~~~~--~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr 70 (272)
+.|+||++.+. +.+...+|||.||..||.+|++. ..+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~----------~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR----------NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH----------SSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh----------CCcCCccC
Confidence 36999999984 45556689999999999999984 46999996
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.92 E-value=9.5e-10 Score=75.37 Aligned_cols=47 Identities=34% Similarity=0.745 Sum_probs=38.9
Q ss_pred CCcccccccCCCCceeecCCCCc-ccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 045854 18 PNPCPICLGPVVEDSYLDKCFHK-FCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVS 75 (272)
Q Consensus 18 ~~~CpICl~~~~~p~~l~~CgH~-FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~ 75 (272)
+..|+||++...+++.+ ||||. ||..|+.+|++ ....||+||+++..
T Consensus 2 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~----------~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRDVVLL-PCGHLCFCEECAERLLK----------RKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSSEEEE-TTCEEEEEHHHHHHHHH----------TTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCceEEe-CCCChHHHHHHhHHhcc----------cCCCCCcCChhhcC
Confidence 46899999999887555 89998 99999999998 36899999998764
No 10
>PHA02926 zinc finger-like protein; Provisional
Probab=98.89 E-value=1.5e-09 Score=95.56 Aligned_cols=60 Identities=32% Similarity=0.656 Sum_probs=44.7
Q ss_pred CCCCCcccccccCCCC--------ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccceee
Q 045854 15 SENPNPCPICLGPVVE--------DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIH 78 (272)
Q Consensus 15 ~~~~~~CpICl~~~~~--------p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~~ 78 (272)
.+.+..|+||++.... ...+.+|+|.||..||..|.+... ..+....||+||..+..+++
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~----~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRR----ETGASDNCPICRTRFRNITM 234 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhcc----ccCcCCcCCCCcceeeeecc
Confidence 3557899999987633 235779999999999999987421 23456789999998765543
No 11
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.84 E-value=2.4e-09 Score=70.08 Aligned_cols=41 Identities=49% Similarity=1.146 Sum_probs=36.4
Q ss_pred ccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCC
Q 045854 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLC 69 (272)
Q Consensus 21 CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlC 69 (272)
|+||++.+.++..+.+|||.||..|+.+|++. .....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~--------~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLEN--------SGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHH--------TSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHh--------cCCccCCcC
Confidence 89999999999867799999999999999984 146789998
No 12
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.8e-09 Score=90.73 Aligned_cols=49 Identities=41% Similarity=0.802 Sum_probs=40.9
Q ss_pred CCCCcccccccCCCCce-eecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 16 ENPNPCPICLGPVVEDS-YLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~-~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
+....|||||+.+...+ +.++|||.||..||+.-++. ..+||+|++.++
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~----------~~~CP~C~kkIt 178 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN----------TNKCPTCRKKIT 178 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHh----------CCCCCCcccccc
Confidence 34578999999997754 55799999999999999984 689999998653
No 13
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.82 E-value=4.5e-09 Score=68.57 Aligned_cols=44 Identities=45% Similarity=0.979 Sum_probs=38.2
Q ss_pred cccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 20 PCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 20 ~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
.|+||++.+.++..+.+|||.||..|+..|++. ....||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~---------~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS---------GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHh---------CcCCCCCCCCc
Confidence 499999999888788789999999999999884 35789999975
No 14
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.69 E-value=2e-08 Score=71.39 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=39.0
Q ss_pred CcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 19 NPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 19 ~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
..||||.+.+.+|+.+ +|||+||..||..|++. ...||.|+.++
T Consensus 2 ~~Cpi~~~~~~~Pv~~-~~G~v~~~~~i~~~~~~----------~~~cP~~~~~~ 45 (63)
T smart00504 2 FLCPISLEVMKDPVIL-PSGQTYERRAIEKWLLS----------HGTDPVTGQPL 45 (63)
T ss_pred cCCcCCCCcCCCCEEC-CCCCEEeHHHHHHHHHH----------CCCCCCCcCCC
Confidence 5799999999999665 89999999999999983 46899999875
No 15
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.66 E-value=1.9e-08 Score=74.52 Aligned_cols=43 Identities=35% Similarity=0.921 Sum_probs=34.1
Q ss_pred CCcccccccCCCC------------ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCC
Q 045854 18 PNPCPICLGPVVE------------DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCK 70 (272)
Q Consensus 18 ~~~CpICl~~~~~------------p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr 70 (272)
...|+||++.+.+ ++.+.+|||.|+..||.+|++. ...||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~----------~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ----------NNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT----------SSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc----------CCcCCCCC
Confidence 4459999999933 3455689999999999999984 56999997
No 16
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.64 E-value=2.4e-08 Score=95.68 Aligned_cols=51 Identities=29% Similarity=0.610 Sum_probs=43.2
Q ss_pred CCCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 13 CSSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 13 ~~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
...+....|+||++.+.+|+. ++|||.||..||..|+.. ...||+|+..+.
T Consensus 21 ~~Le~~l~C~IC~d~~~~Pvi-tpCgH~FCs~CI~~~l~~----------~~~CP~Cr~~~~ 71 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVL-TSCSHTFCSLCIRRCLSN----------QPKCPLCRAEDQ 71 (397)
T ss_pred cccccccCCCcCchhhhCccC-CCCCCchhHHHHHHHHhC----------CCCCCCCCCccc
Confidence 445677899999999999965 589999999999999873 458999998764
No 17
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.1e-08 Score=97.22 Aligned_cols=52 Identities=29% Similarity=0.708 Sum_probs=42.9
Q ss_pred CCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 045854 18 PNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVS 75 (272)
Q Consensus 18 ~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~ 75 (272)
+..||||+++...|..+ .|||.||+.||.+++... .......||+|+..+..
T Consensus 186 ~~~CPICL~~~~~p~~t-~CGHiFC~~CiLqy~~~s-----~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRT-NCGHIFCGPCILQYWNYS-----AIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCccccc-ccCceeeHHHHHHHHhhh-----cccCCccCCchhhhccc
Confidence 78899999999999666 599999999999987752 23356899999987754
No 18
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.50 E-value=1.4e-07 Score=59.16 Aligned_cols=39 Identities=44% Similarity=1.131 Sum_probs=32.5
Q ss_pred ccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCC
Q 045854 21 CPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLC 69 (272)
Q Consensus 21 CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlC 69 (272)
|+||++...++..+ +|||.||..|+..|++. ....||+|
T Consensus 1 C~iC~~~~~~~~~~-~C~H~~c~~C~~~~~~~---------~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVL-PCGHTFCRSCIRKWLKS---------GNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEe-cCCChHHHHHHHHHHHh---------CcCCCCCC
Confidence 89999997776555 89999999999999873 35689987
No 19
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.45 E-value=1.4e-07 Score=62.99 Aligned_cols=42 Identities=36% Similarity=0.863 Sum_probs=35.0
Q ss_pred cccccccCC--CCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCc
Q 045854 20 PCPICLGPV--VEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKT 71 (272)
Q Consensus 20 ~CpICl~~~--~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~ 71 (272)
.|+||...+ ..+..+++|||+||..|+..+.. ....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~----------~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKG----------KSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcC----------CCCCCcCCCC
Confidence 489999999 44567789999999999999872 3689999984
No 20
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.41 E-value=1.3e-07 Score=63.10 Aligned_cols=39 Identities=36% Similarity=0.815 Sum_probs=22.1
Q ss_pred ccccccCCCC----ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCC
Q 045854 21 CPICLGPVVE----DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCP 67 (272)
Q Consensus 21 CpICl~~~~~----p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CP 67 (272)
||||.+ +.+ |+.+ +|||+||..|+.++++... ....+||
T Consensus 1 CpIc~e-~~~~~n~P~~L-~CGH~~c~~cl~~l~~~~~------~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVL-PCGHVFCKDCLQKLSKKSD------RNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE--SSS-EEEHHHHHHHHHH-S-------S-B--T
T ss_pred CCcccc-ccCCCCCCEEE-eCccHHHHHHHHHHHhcCC------CCeeeCc
Confidence 899999 766 7666 6999999999999988411 2356787
No 21
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=3e-07 Score=82.85 Aligned_cols=48 Identities=33% Similarity=0.722 Sum_probs=40.1
Q ss_pred CCCCcccccccCCCCceeecCCCCcccHHHHHH-HHHHhhhcccCCCCCCCCCCCCccc
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVH-WTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~-w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
..+..|+||++....|..+ +|||.||..||.. |.+. ..-.||+||+.+
T Consensus 213 ~~d~kC~lC~e~~~~ps~t-~CgHlFC~~Cl~~~~t~~---------k~~~CplCRak~ 261 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCT-PCGHLFCLSCLLISWTKK---------KYEFCPLCRAKV 261 (271)
T ss_pred ccccceeeeecccCCcccc-cccchhhHHHHHHHHHhh---------ccccCchhhhhc
Confidence 4578899999999999766 7999999999999 8764 234599999854
No 22
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.4e-07 Score=87.09 Aligned_cols=47 Identities=34% Similarity=0.750 Sum_probs=39.0
Q ss_pred CcccccccCCCC--ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 19 NPCPICLGPVVE--DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 19 ~~CpICl~~~~~--p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
..|+||++.+.. ..++.||.|.|+..||..|+.. ....||+||..+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~---------~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQ---------TRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhh---------cCccCCCCCCcCC
Confidence 699999999974 5667799999999999999984 2345999998653
No 23
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.34 E-value=1.4e-07 Score=87.44 Aligned_cols=48 Identities=25% Similarity=0.601 Sum_probs=41.6
Q ss_pred CCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
+..+.|.||.+.|..| +++||+|+||.-||..++.. .+.||+|..++.
T Consensus 21 D~lLRC~IC~eyf~ip-~itpCsHtfCSlCIR~~L~~----------~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIP-MITPCSHTFCSLCIRKFLSY----------KPQCPTCCVTVT 68 (442)
T ss_pred HHHHHHhHHHHHhcCc-eeccccchHHHHHHHHHhcc----------CCCCCceecccc
Confidence 4567899999999999 45589999999999999984 689999988763
No 24
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.33 E-value=4.2e-07 Score=69.02 Aligned_cols=49 Identities=31% Similarity=0.730 Sum_probs=36.7
Q ss_pred CCcccccccCCCC------------ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 18 PNPCPICLGPVVE------------DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 18 ~~~CpICl~~~~~------------p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
+..|+||...|.. |...-.|+|.|+..||.+|+...+ +...||+||++.
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~-------~~~~CPmCR~~w 81 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQS-------SKGQCPMCRQPW 81 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHcccc-------CCCCCCCcCCee
Confidence 4556666665542 556668999999999999998532 346999999875
No 25
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.29 E-value=6.6e-08 Score=89.41 Aligned_cols=90 Identities=18% Similarity=0.453 Sum_probs=64.6
Q ss_pred CCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccce--eecccCCcceeccccc
Q 045854 15 SENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSI--IHGYDGTYFQRNYISQ 92 (272)
Q Consensus 15 ~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~--~~~~~~~~~~~~y~~~ 92 (272)
.....+|.+|.+.+.++.+++.|.|+||..||...+.. ...||.|...+... .+++..+...+..+.+
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~----------~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK 81 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE----------SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYK 81 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH----------hccCCccceeccCccccccCCcchHHHHHHHH
Confidence 34567899999999999999999999999999999884 68999999877544 4555554433444433
Q ss_pred CCCCcccccccccccccccccCCCC
Q 045854 93 IFGDSFFFSKAHRYRLQSYYTEPGI 117 (272)
Q Consensus 93 ~~~~s~~~~~~~~~R~r~~~~~~g~ 117 (272)
..+ .+......|++.||...|+
T Consensus 82 LVP---gl~erE~k~~rdFy~~~~~ 103 (331)
T KOG2660|consen 82 LVP---GLQEREMKRRRDFYKSRPL 103 (331)
T ss_pred Hcc---hHHHHHHHHHHHHHHhCCC
Confidence 333 2233444566778877664
No 26
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.27 E-value=2.9e-07 Score=83.86 Aligned_cols=48 Identities=25% Similarity=0.552 Sum_probs=41.5
Q ss_pred CCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 15 SENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 15 ~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
.+..+.|-||...+..|+. ++|||+||.-||...+.. .+.||+|+.+.
T Consensus 22 LDs~lrC~IC~~~i~ip~~-TtCgHtFCslCIR~hL~~----------qp~CP~Cr~~~ 69 (391)
T COG5432 22 LDSMLRCRICDCRISIPCE-TTCGHTFCSLCIRRHLGT----------QPFCPVCREDP 69 (391)
T ss_pred chhHHHhhhhhheeeccee-cccccchhHHHHHHHhcC----------CCCCccccccH
Confidence 4556889999999999954 489999999999999883 78999999865
No 27
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=3.8e-07 Score=92.25 Aligned_cols=47 Identities=26% Similarity=0.581 Sum_probs=40.9
Q ss_pred CCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 17 NPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
+.++||.|-..+++.+. ..|||.||..|+.+.+.. +..+||.|.+.|
T Consensus 642 ~~LkCs~Cn~R~Kd~vI-~kC~H~FC~~Cvq~r~et---------RqRKCP~Cn~aF 688 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVI-TKCGHVFCEECVQTRYET---------RQRKCPKCNAAF 688 (698)
T ss_pred hceeCCCccCchhhHHH-HhcchHHHHHHHHHHHHH---------hcCCCCCCCCCC
Confidence 56899999999998744 479999999999999886 578999999865
No 28
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.2e-06 Score=79.24 Aligned_cols=60 Identities=30% Similarity=0.601 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 045854 8 GGSSSCSSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVS 75 (272)
Q Consensus 8 ~~~s~~~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~ 75 (272)
+..+++....+.+||+|.+....|..+.+|||.||+.||..-.... .++.||.|..+...
T Consensus 229 p~~sss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~--------asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 229 PKFSSSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWD--------ASFTCPLCGENVEP 288 (298)
T ss_pred CCcccccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcch--------hhcccCccCCCCcc
Confidence 4445566778899999999999999998999999999998854432 26899999987543
No 29
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.21 E-value=6.8e-07 Score=66.07 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=37.3
Q ss_pred CCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 17 NPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
+.+.||||.+.+.+|+.+ +|||+|+..||..|++. ....||+|+.++.
T Consensus 3 ~~f~CpIt~~lM~dPVi~-~~G~tyer~~I~~~l~~---------~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVIL-PSGHTYERSAIERWLEQ---------NGGTDPFTRQPLS 50 (73)
T ss_dssp GGGB-TTTSSB-SSEEEE-TTSEEEEHHHHHHHHCT---------TSSB-TTT-SB-S
T ss_pred cccCCcCcCcHhhCceeC-CcCCEEcHHHHHHHHHc---------CCCCCCCCCCcCC
Confidence 457899999999999777 89999999999999983 3689999988764
No 30
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=3.7e-07 Score=63.36 Aligned_cols=54 Identities=30% Similarity=0.694 Sum_probs=43.4
Q ss_pred CCcccccccCCCCceeecCCCC-cccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccceeeccc
Q 045854 18 PNPCPICLGPVVEDSYLDKCFH-KFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGYD 81 (272)
Q Consensus 18 ~~~CpICl~~~~~p~~l~~CgH-~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~~~~~ 81 (272)
...|.||.+...+. ++-.||| ..|+.|-.+.++. ....||+||+++..+|..+.
T Consensus 7 ~dECTICye~pvds-VlYtCGHMCmCy~Cg~rl~~~---------~~g~CPiCRapi~dvIkTY~ 61 (62)
T KOG4172|consen 7 SDECTICYEHPVDS-VLYTCGHMCMCYACGLRLKKA---------LHGCCPICRAPIKDVIKTYR 61 (62)
T ss_pred ccceeeeccCcchH-HHHHcchHHhHHHHHHHHHHc---------cCCcCcchhhHHHHHHHhhc
Confidence 37899999999887 4447999 6899999886662 46799999999988776543
No 31
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=5.5e-07 Score=79.79 Aligned_cols=48 Identities=31% Similarity=0.721 Sum_probs=40.8
Q ss_pred CCCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCc
Q 045854 13 CSSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKT 71 (272)
Q Consensus 13 ~~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~ 71 (272)
....+...|+||++.+..| .+.+|||+||..|+..++. ....||.|+.
T Consensus 8 ~~~~~~~~C~iC~~~~~~p-~~l~C~H~~c~~C~~~~~~----------~~~~Cp~cr~ 55 (386)
T KOG2177|consen 8 EVLQEELTCPICLEYFREP-VLLPCGHNFCRACLTRSWE----------GPLSCPVCRP 55 (386)
T ss_pred hhccccccChhhHHHhhcC-ccccccchHhHHHHHHhcC----------CCcCCcccCC
Confidence 3456788999999999999 6668999999999999875 2479999993
No 32
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.4e-06 Score=81.79 Aligned_cols=47 Identities=23% Similarity=0.738 Sum_probs=38.7
Q ss_pred CCCCcccccccCCCC-------------ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 16 ENPNPCPICLGPVVE-------------DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 16 ~~~~~CpICl~~~~~-------------p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
.++..|.||++.+.. |..+ ||||.++..|++.|++. +.+||+||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrL-pCGHilHl~CLknW~ER----------qQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRL-PCGHILHLHCLKNWLER----------QQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccc-cccceeeHHHHHHHHHh----------ccCCCcccCcc
Confidence 456789999998433 2455 89999999999999994 67999999985
No 33
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.13 E-value=2.1e-06 Score=79.59 Aligned_cols=48 Identities=27% Similarity=0.535 Sum_probs=35.1
Q ss_pred CCcccccccC-CCCce---eecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 18 PNPCPICLGP-VVEDS---YLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 18 ~~~CpICl~~-~~~p~---~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
+..||+|... +.+|. .+.+|||.||..|+...+.. +...||.|+.++.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~---------~~~~CP~C~~~lr 54 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR---------GSGSCPECDTPLR 54 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC---------CCCCCCCCCCccc
Confidence 4579999984 23332 33379999999999996542 3568999998653
No 34
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.10 E-value=5.3e-07 Score=64.78 Aligned_cols=44 Identities=34% Similarity=0.769 Sum_probs=24.5
Q ss_pred CCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 17 NPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
+...|++|.+.+..|+.+..|.|.||..||..-+. ..||+|..+
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~------------~~CPvC~~P 49 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG------------SECPVCHTP 49 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT------------TB-SSS--B
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC------------CCCCCcCCh
Confidence 35789999999999998899999999999976433 469999986
No 35
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=4.8e-07 Score=84.37 Aligned_cols=50 Identities=32% Similarity=0.812 Sum_probs=42.3
Q ss_pred CCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 045854 17 NPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVS 75 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~ 75 (272)
....|+|||+.+...++...|+|.||+.||..-++. +...||.||+...+
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~---------gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS---------GNNECPTCRKKLVS 91 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh---------cCCCCchHHhhccc
Confidence 467899999999998788899999999999887664 56899999987643
No 36
>PF01480 PWI: PWI domain; InterPro: IPR002483 The PWI domain, named after a highly conserved PWI tri-peptide located within its N-terminal region, is a ~80 amino acid module, which is found either at the N terminus or at the C terminus of eukaryotic proteins involved in pre-mRNA processing []. It is generally found in association with other domains such as RRM and RS. The PWI domain is a RNA/DNA-binding domain that has an equal preference for single- and double-stranded nucleic acids and is likely to have multiple important functions in pre-mRNA processing []. Proteins containing this domain include the SR-related nuclear matrix protein of 160kDa (SRm160) splicing and 3'-end cleavage-stimulatory factor, and the mammalian splicing factor PRP3. The PWI domain is a soluble, globular and independently folded domain which consists of a four-helix bundle, with structured N- and C-terminal elements [].; GO: 0006397 mRNA processing; PDB: 1MP1_A 1X4Q_A.
Probab=98.01 E-value=4.7e-06 Score=62.31 Aligned_cols=68 Identities=22% Similarity=0.523 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhHhhcccchHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhccccccchhhhHHHHHHHHH
Q 045854 139 WLQSWLRREIQAVMQEEDVEIVVHHILGVVDSFLKRNKQRCQMGTPETKEEDFKALVSDAARPFLMARTDRFVNEMQLFL 218 (272)
Q Consensus 139 Rl~~Wl~REL~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~~~~fl~~~t~~F~HEl~~Fa 218 (272)
.+.|||.+.|.-+++.+| +++++||++.|++- . .....+..+ +.+.|.+||++.|..|+++|+..+
T Consensus 3 ~lk~WI~~kl~e~lG~ed-d~lvdyI~~~l~~~------~---~~~~~~~~~----l~~~L~~fL~~~a~~Fv~~Lw~~l 68 (77)
T PF01480_consen 3 KLKPWISKKLEEILGFED-DVLVDYIVALLKSH------K---SSNEPDPKE----LQEQLEDFLDEEAEEFVDELWRLL 68 (77)
T ss_dssp HHHHHHHHHHHHHHSS---CHHHHHHHHHCCTT-----------SSS--HHH----HHHHHTTTTGHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHhc------c---ccccccHHH----HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 589999999999999644 57889999886531 0 001112333 456789999999999999999987
Q ss_pred hC
Q 045854 219 AS 220 (272)
Q Consensus 219 ~S 220 (272)
-|
T Consensus 69 ~~ 70 (77)
T PF01480_consen 69 IS 70 (77)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 37
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=4.4e-06 Score=76.72 Aligned_cols=49 Identities=29% Similarity=0.679 Sum_probs=40.3
Q ss_pred CCCcccccccCCC--CceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 17 NPNPCPICLGPVV--EDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 17 ~~~~CpICl~~~~--~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
....|+||+..+. +..+.+||.|.|+..|+..|+.. -..+||+||+++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~---------y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG---------YSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhh---------hcccCCccCCCCC
Confidence 4578999999885 35666799999999999999873 3579999998764
No 38
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=2.8e-06 Score=84.93 Aligned_cols=46 Identities=30% Similarity=0.673 Sum_probs=39.8
Q ss_pred CCCCcccccccCCCC-----ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 16 ENPNPCPICLGPVVE-----DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 16 ~~~~~CpICl~~~~~-----p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
.....|+||++.+.. +..+ +|+|.||..|+..|++. ...||+||..
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL-~C~Hifh~~CL~~W~er----------~qtCP~CR~~ 339 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRL-PCGHIFHDSCLRSWFER----------QQTCPTCRTV 339 (543)
T ss_pred hcCCeeeeechhhcccccccccee-ecccchHHHHHHHHHHH----------hCcCCcchhh
Confidence 347889999999988 5555 89999999999999995 5799999983
No 39
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=8.7e-06 Score=76.29 Aligned_cols=51 Identities=25% Similarity=0.640 Sum_probs=42.0
Q ss_pred CCCCcccccccCCCCceeecCCCC-cccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccee
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFH-KFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSII 77 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH-~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~ 77 (272)
+....|.||+....+.+.+ ||.| ..|..|.+...-+ ...||+||+++...+
T Consensus 288 ~~gkeCVIClse~rdt~vL-PCRHLCLCs~Ca~~Lr~q----------~n~CPICRqpi~~ll 339 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVL-PCRHLCLCSGCAKSLRYQ----------TNNCPICRQPIEELL 339 (349)
T ss_pred cCCCeeEEEecCCcceEEe-cchhhehhHhHHHHHHHh----------hcCCCccccchHhhh
Confidence 4567899999999998666 8999 7899999887632 578999999886554
No 40
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=4.7e-06 Score=76.45 Aligned_cols=50 Identities=36% Similarity=0.657 Sum_probs=41.2
Q ss_pred CCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccee
Q 045854 18 PNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSII 77 (272)
Q Consensus 18 ~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~ 77 (272)
...|+||+....-|+.+ +|+|.||+-||+--.+. ....|++||.+|.+.|
T Consensus 7 ~~eC~IC~nt~n~Pv~l-~C~HkFCyiCiKGsy~n---------dk~~CavCR~pids~i 56 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNL-YCFHKFCYICIKGSYKN---------DKKTCAVCRFPIDSTI 56 (324)
T ss_pred CCcceeeeccCCcCccc-cccchhhhhhhcchhhc---------CCCCCceecCCCCcch
Confidence 45799999999999666 79999999999886654 3567999999986543
No 41
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.59 E-value=2.5e-05 Score=55.15 Aligned_cols=45 Identities=29% Similarity=0.541 Sum_probs=32.1
Q ss_pred CCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCC
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPL 68 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPl 68 (272)
.-...|||.+..+.+|+....|||+|....|.+|++. .....||.
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~--------~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQR--------NGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTT--------TS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHh--------cCCCCCCC
Confidence 3467899999999999998899999999999999942 14678998
No 42
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=6.3e-05 Score=71.09 Aligned_cols=61 Identities=28% Similarity=0.716 Sum_probs=45.1
Q ss_pred CCCCcccccccCCCCce-------eecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccceeec
Q 045854 16 ENPNPCPICLGPVVEDS-------YLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHG 79 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~-------~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~~~ 79 (272)
..+..|.||++...... .+.+|.|.||..||..|....+ ....-.+.||.||.....+++.
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q---~~~~~sksCP~CRv~s~~v~pS 226 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQ---FESKTSKSCPFCRVPSSFVNPS 226 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhc---cccccccCCCcccCcccccccc
Confidence 45788999999887654 2357999999999999986421 1223468999999876655544
No 43
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.37 E-value=0.00012 Score=54.82 Aligned_cols=34 Identities=29% Similarity=0.577 Sum_probs=28.2
Q ss_pred ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 31 DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 31 p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
|+....|.|.|+..||.+|+.. ...||++++++.
T Consensus 48 ~v~wG~CnHaFH~HCI~rWL~T----------k~~CPld~q~w~ 81 (88)
T COG5194 48 PVVWGVCNHAFHDHCIYRWLDT----------KGVCPLDRQTWV 81 (88)
T ss_pred eEEEEecchHHHHHHHHHHHhh----------CCCCCCCCceeE
Confidence 4455579999999999999984 579999998753
No 44
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=3.1e-05 Score=57.37 Aligned_cols=37 Identities=27% Similarity=0.713 Sum_probs=29.7
Q ss_pred ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 31 DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 31 p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
|.++-.|.|.|...||.+|+...+ +...||+||+.+.
T Consensus 45 PLv~G~C~h~fh~hCI~~wl~~~t-------sq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 45 PLVWGYCLHAFHAHCILKWLNTPT-------SQGQCPMCRQTWQ 81 (84)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCcc-------ccccCCcchheeE
Confidence 555667999999999999998533 4579999998753
No 45
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.30 E-value=0.00015 Score=69.93 Aligned_cols=51 Identities=27% Similarity=0.708 Sum_probs=43.9
Q ss_pred CCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
..+++..|++|..++.+|...+.|||.||..|+..|... ...||.|+....
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~----------~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN----------HQKCPVCRQELT 67 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc----------CcCCcccccccc
Confidence 367789999999999999775589999999999999883 579999987654
No 46
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00016 Score=69.58 Aligned_cols=49 Identities=27% Similarity=0.638 Sum_probs=41.7
Q ss_pred CCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 15 SENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 15 ~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
...++.|.||...+..|+.+ ||||.||..||.+-+. ....||+||.++.
T Consensus 81 ~~sef~c~vc~~~l~~pv~t-pcghs~c~~Cl~r~ld----------~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVT-PCGHSFCLECLDRSLD----------QETECPLCRDELV 129 (398)
T ss_pred ccchhhhhhhHhhcCCCccc-cccccccHHHHHHHhc----------cCCCCcccccccc
Confidence 35678899999999999777 9999999999988554 3679999998775
No 47
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.24 E-value=0.00016 Score=69.74 Aligned_cols=48 Identities=25% Similarity=0.714 Sum_probs=38.5
Q ss_pred CCCCCCCcccccccCCCCce---eecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 13 CSSENPNPCPICLGPVVEDS---YLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 13 ~~~~~~~~CpICl~~~~~p~---~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
....+-.+||+||+.+...+ ....|.|+|...|+..|.. .+||+||-.
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~------------~scpvcR~~ 220 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD------------SSCPVCRYC 220 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc------------CcChhhhhh
Confidence 34556789999999887643 5558999999999999965 589999853
No 48
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.00033 Score=68.26 Aligned_cols=51 Identities=29% Similarity=0.779 Sum_probs=38.8
Q ss_pred CCCCCcccccccCCCC-----c-----------eeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 15 SENPNPCPICLGPVVE-----D-----------SYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 15 ~~~~~~CpICl~~~~~-----p-----------~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
......|+||+.++.- + ..++||.|.|+..|+.+|+.. ....||.||.++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~---------ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDT---------YKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhh---------hcccCCccCCCCC
Confidence 3445679999987632 1 234599999999999999984 2468999998753
No 49
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.00 E-value=0.0002 Score=72.94 Aligned_cols=52 Identities=25% Similarity=0.575 Sum_probs=39.3
Q ss_pred CCCcccccccCCCCceee--cCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccceee
Q 045854 17 NPNPCPICLGPVVEDSYL--DKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIH 78 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l--~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~~ 78 (272)
....||+|+..+.+.... .+|+|.||..|+..|.+. ..+||+||.+|..++.
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~----------aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC----------AQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh----------cccCchhhhhhheeee
Confidence 345688888776553222 379999999999999985 5699999999865543
No 50
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.00 E-value=0.00037 Score=60.79 Aligned_cols=47 Identities=23% Similarity=0.528 Sum_probs=39.3
Q ss_pred CCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
.-.+.|.||...+..|++. .|||.||..|..+-.+ ....|-+|.+..
T Consensus 194 ~IPF~C~iCKkdy~spvvt-~CGH~FC~~Cai~~y~----------kg~~C~~Cgk~t 240 (259)
T COG5152 194 KIPFLCGICKKDYESPVVT-ECGHSFCSLCAIRKYQ----------KGDECGVCGKAT 240 (259)
T ss_pred CCceeehhchhhccchhhh-hcchhHHHHHHHHHhc----------cCCcceecchhh
Confidence 3467899999999999666 7999999999988766 368999998753
No 51
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=8.4e-05 Score=68.08 Aligned_cols=49 Identities=24% Similarity=0.657 Sum_probs=38.8
Q ss_pred CCCcccccccCCCCceeecCCCC-cccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccceeecc
Q 045854 17 NPNPCPICLGPVVEDSYLDKCFH-KFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGY 80 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~~CgH-~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~~~~ 80 (272)
....|.||++...+-++| +||| +-|..|-.+ ...||+||+.+..+++-+
T Consensus 299 ~~~LC~ICmDaP~DCvfL-eCGHmVtCt~CGkr--------------m~eCPICRqyi~rvvrif 348 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFL-ECGHMVTCTKCGKR--------------MNECPICRQYIVRVVRIF 348 (350)
T ss_pred HHHHHHHHhcCCcceEEe-ecCcEEeehhhccc--------------cccCchHHHHHHHHHhhh
Confidence 367899999999998666 7999 779999655 358999999776665543
No 52
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.98 E-value=0.00031 Score=51.60 Aligned_cols=57 Identities=21% Similarity=0.483 Sum_probs=25.5
Q ss_pred CCcccccccCCC-C---ceee---cCCCCcccHHHHHHHHHHhhhcccCC-CCCCCCCCCCcccc
Q 045854 18 PNPCPICLGPVV-E---DSYL---DKCFHKFCYNCIVHWTKVVASKHSSL-LSSVKCPLCKTENV 74 (272)
Q Consensus 18 ~~~CpICl~~~~-~---p~~l---~~CgH~FC~~Ci~~w~~~~~~k~~~~-~~~~~CPlCr~~~~ 74 (272)
+..|+||..... + |... ..|+..|+..||.+|+.......... .....||.|++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 457999998765 2 2111 27899999999999998533221111 12246999998764
No 53
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00047 Score=64.91 Aligned_cols=52 Identities=21% Similarity=0.590 Sum_probs=39.4
Q ss_pred CCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccceeec
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHG 79 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~~~ 79 (272)
.......|.||++...+.+.+ ||||.-| |..-..+ ...||+||..+...+..
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fv-pcGh~cc--ct~cs~~-----------l~~CPvCR~rI~~~~k~ 352 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFV-PCGHVCC--CTLCSKH-----------LPQCPVCRQRIRLVRKR 352 (355)
T ss_pred ccCCCCceEEecCCccceeee-cCCcEEE--chHHHhh-----------CCCCchhHHHHHHHHHH
Confidence 344567899999999997666 8999877 7665544 46799999987655443
No 54
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00055 Score=64.35 Aligned_cols=48 Identities=31% Similarity=0.789 Sum_probs=41.1
Q ss_pred CCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
+++..||||.....+.++. ||+|.-|+.||.+.+.+ .+.|-.|++.+.
T Consensus 420 sEd~lCpICyA~pi~Avf~-PC~H~SC~~CI~qHlmN----------~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFA-PCSHRSCYGCITQHLMN----------CKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhcc-CCCCchHHHHHHHHHhc----------CCeeeEecceee
Confidence 5778999999988887555 89999999999998884 679999998654
No 55
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.88 E-value=0.00037 Score=72.36 Aligned_cols=52 Identities=25% Similarity=0.610 Sum_probs=38.9
Q ss_pred CCCCcccccccCCCC-----c-eeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 045854 16 ENPNPCPICLGPVVE-----D-SYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVS 75 (272)
Q Consensus 16 ~~~~~CpICl~~~~~-----p-~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~ 75 (272)
+....|+||...+.. | .+-..|.|.|+..|+..|.+. ++..+||+||.+++.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~S--------s~~s~CPlCRseitf 1524 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFAS--------SARSNCPLCRSEITF 1524 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHh--------cCCCCCCcccccccc
Confidence 345689999976641 1 123369999999999999984 246799999987653
No 56
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.82 E-value=0.0005 Score=65.54 Aligned_cols=47 Identities=26% Similarity=0.700 Sum_probs=38.3
Q ss_pred cccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 045854 20 PCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVS 75 (272)
Q Consensus 20 ~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~ 75 (272)
.|.||-+.-++. .+.||||..|..|+..|... ..+..||.||.++..
T Consensus 371 LCKICaendKdv-kIEPCGHLlCt~CLa~WQ~s--------d~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 371 LCKICAENDKDV-KIEPCGHLLCTSCLAAWQDS--------DEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHhhccCCCc-ccccccchHHHHHHHhhccc--------CCCCCCCceeeEecc
Confidence 599999987775 66799999999999999752 126789999998743
No 57
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0004 Score=54.39 Aligned_cols=45 Identities=31% Similarity=0.765 Sum_probs=33.7
Q ss_pred CCcccccccCCCC----------------ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 18 PNPCPICLGPVVE----------------DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 18 ~~~CpICl~~~~~----------------p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
-+.|+||..-+-+ .+.-..|.|.|++.||.+|+++ ...||+|.++
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlkt----------r~vCPLdn~e 106 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKT----------RNVCPLDNKE 106 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhh----------cCcCCCcCcc
Confidence 3579998754422 1222379999999999999995 6799999875
No 58
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=96.77 E-value=0.00035 Score=69.20 Aligned_cols=253 Identities=20% Similarity=0.147 Sum_probs=147.7
Q ss_pred CCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc-ceeecccCCcceecccccC--
Q 045854 17 NPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV-SIIHGYDGTYFQRNYISQI-- 93 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~-~~~~~~~~~~~~~~y~~~~-- 93 (272)
....|++|.+.+..-.....|.|.||..|+.+|.+..-+.-...-....|++|-.... ..+....+..|.+....-.
T Consensus 34 l~s~~~~~~g~fr~~s~~~~r~np~~ihr~~~W~~r~i~~l~~t~~s~v~~~~~~~~~~~~~~~l~~~~f~~~l~~fl~~ 113 (553)
T KOG4430|consen 34 LYSLPYPESGRFRRESREIFRFNPFCIHRLMQWKKRDISVLNRTRGSDVNDLQDLIMNLLPRLSLESLAFRRELEEFLYA 113 (553)
T ss_pred ccCCCcccccchhccchhhhccChhhhcccccchhhHHHHHhhhccccccceeehhcccccchhhccHHHHHHHHHHHhh
Confidence 3467899999887755656799999999999997743222111112223333321100 0000000111111110000
Q ss_pred -----------CCCc-cccccccc-ccccccccCCCCcccchhhhhhhhcccccchhhhHHHHHHHHHhHhhcccchHHH
Q 045854 94 -----------FGDS-FFFSKAHR-YRLQSYYTEPGILNDVFNVSRYWKSRKYLQSNQWLQSWLRREIQAVMQEEDVEIV 160 (272)
Q Consensus 94 -----------~~~s-~~~~~~~~-~R~r~~~~~~g~~~~~~~~~r~~~~~~~~~~~~Rl~~Wl~REL~~l~~~~~~~~~ 160 (272)
...+ |......+ +-..--+...|...++.+.+.+|+...+.....-+..|+++|++.....++|.+.
T Consensus 114 ~t~hfihe~~~farSpft~~~~~~~~~~~~~~~~eg~~~d~~~ta~~~d~~~~le~~~~~~~~~~a~~~~d~pgp~v~V~ 193 (553)
T KOG4430|consen 114 CTDHFIHELINFARSPFTMNGYKRNCSCSTRRLTEGDLRDVRNTAKSVDDRDFLENDLCLAARLKAETSSDRPGPRVHVP 193 (553)
T ss_pred ccchhhhhhhccccCccchhhHhcccCcchhhhhhhcccccccccccccccccccccchhhhhhccccCcCCCCCcceec
Confidence 0000 00000000 0000011245667788888888888777777788899999999998887788888
Q ss_pred HHHHHH---HHHHHHH--hhhhcccCCCC---CCchHHHHHHHHhh--ccccccchhhhHHHHHHHHHhCCCChHHHHHH
Q 045854 161 VHHILG---VVDSFLK--RNKQRCQMGTP---ETKEEDFKALVSDA--ARPFLMARTDRFVNEMQLFLASALNIEAYDAV 230 (272)
Q Consensus 161 ~~~i~~---~l~~~~~--~~~~~~~~~~~---~~~~~ef~~~~~~~--~~~fl~~~t~~F~HEl~~Fa~Sp~~~~~yD~~ 230 (272)
..++++ ....+.+ ...|-...++. .+.+..+.+.+... ++|+..+++..++-|.+++..+...+..+|..
T Consensus 194 ~~~ll~t~~sdeef~~~~~i~Q~r~vgt~s~~~~~s~~~~a~v~~~~~~sp~~~~~s~~~~deq~~~~~~~~~~~~~~~~ 273 (553)
T KOG4430|consen 194 SDSLLQTGESDEEFTISIEIKQIRNVGTKSSRNNLSSIVQATVVKKAPVSPVKKPHSKRELDEQENKNACGLCLSEADAK 273 (553)
T ss_pred chhhhcccccchhhcchhhhhhhhhccchhHHhhhhhhhccccccccccCccCcccchhhhhhhhcccchhhchhhHhHH
Confidence 888877 3333322 11111111111 11355666667777 88999999999999999999999999999998
Q ss_pred hhhccCCCCC------CccccCCCCCCCCCCcccceEEeecCCCCC
Q 045854 231 YMQRLGWNTP------RVTMESGEGETSGQTPVIPYLHIFDEDSDG 270 (272)
Q Consensus 231 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (272)
.+.++-=.+- +.-.++.+ +..-..++++|..|+.+..+|
T Consensus 274 eqk~l~~~~~~~~g~tsl~~e~~~-~~v~~~~~tk~~~~~~e~r~G 318 (553)
T KOG4430|consen 274 EQKGLEGNNQRQTGATSLMEEEAV-ESVCPLRVTKVRTISKEARQG 318 (553)
T ss_pred Hhhhhhhcccchhhhhhhhhhhhh-hhhhhcccccccccccccccC
Confidence 8885433332 22222223 455578899999998887663
No 59
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.00065 Score=62.44 Aligned_cols=48 Identities=27% Similarity=0.508 Sum_probs=39.8
Q ss_pred CCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccce
Q 045854 18 PNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSI 76 (272)
Q Consensus 18 ~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~ 76 (272)
.+.|-||...+..|++. .|+|.||..|...-++ ....|++|.+....+
T Consensus 241 Pf~c~icr~~f~~pVvt-~c~h~fc~~ca~~~~q----------k~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVT-KCGHYFCEVCALKPYQ----------KGEKCYVCSQQTHGS 288 (313)
T ss_pred Cccccccccccccchhh-cCCceeehhhhccccc----------cCCcceecccccccc
Confidence 46799999999999776 7999999999988766 367999998865433
No 60
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=96.57 E-value=0.0038 Score=52.67 Aligned_cols=62 Identities=26% Similarity=0.503 Sum_probs=39.6
Q ss_pred CCCcccccccCCCCceeec-----------CCCCcc-cHHHHHHHHHHhhhcccC---------------------CCCC
Q 045854 17 NPNPCPICLGPVVEDSYLD-----------KCFHKF-CYNCIVHWTKVVASKHSS---------------------LLSS 63 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~-----------~CgH~F-C~~Ci~~w~~~~~~k~~~---------------------~~~~ 63 (272)
++.+||||++.+.+.+.|. -|+..+ ...|+.++.+........ ....
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPE 80 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccc
Confidence 3578999999999986664 132222 568999887643322111 1125
Q ss_pred CCCCCCCccccceee
Q 045854 64 VKCPLCKTENVSIIH 78 (272)
Q Consensus 64 ~~CPlCr~~~~~~~~ 78 (272)
..||+||..+..++-
T Consensus 81 L~CPLCRG~V~GWtv 95 (162)
T PF07800_consen 81 LACPLCRGEVKGWTV 95 (162)
T ss_pred ccCccccCceeceEE
Confidence 689999998755543
No 61
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0025 Score=60.99 Aligned_cols=47 Identities=32% Similarity=0.755 Sum_probs=37.2
Q ss_pred CCcccccccCCCCc----eeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 18 PNPCPICLGPVVED----SYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 18 ~~~CpICl~~~~~p----~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
..+||||++.+.-+ +....|||.|-..||..|+. +. ....||.|...
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~-k~-------~~~~cp~c~~k 54 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLG-KK-------TKMQCPLCSGK 54 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHh-hh-------hhhhCcccCCh
Confidence 46899999988653 34458999999999999996 22 35789999865
No 62
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.31 E-value=0.0021 Score=59.34 Aligned_cols=44 Identities=32% Similarity=0.605 Sum_probs=38.5
Q ss_pred CcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCc
Q 045854 19 NPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKT 71 (272)
Q Consensus 19 ~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~ 71 (272)
+.||.|...+.+|+...-|+|.||..||..-+-. +.+.||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~d---------sDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLD---------SDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhh---------ccccCCCccc
Confidence 7899999999999888779999999999986542 4689999976
No 63
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.29 E-value=0.002 Score=63.46 Aligned_cols=53 Identities=26% Similarity=0.625 Sum_probs=42.0
Q ss_pred CCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
.+...|.+|.++-++++.. .|.|.||..|+.+++.... .+...+||.|...+.
T Consensus 534 k~~~~C~lc~d~aed~i~s-~ChH~FCrlCi~eyv~~f~-----~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIES-SCHHKFCRLCIKEYVESFM-----ENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChhhhhHhh-hhhHHHHHHHHHHHHHhhh-----cccCCCCcccccccc
Confidence 4567899999999998555 7999999999999987432 234589999986653
No 64
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.0016 Score=59.21 Aligned_cols=50 Identities=28% Similarity=0.572 Sum_probs=37.6
Q ss_pred CCCCCcccccccCCCCce---------eecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 15 SENPNPCPICLGPVVEDS---------YLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 15 ~~~~~~CpICl~~~~~p~---------~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
.-++..|+||-+.+.... ....|+|+|+-.||.-|.-. |...+||-||..
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWciv--------GKkqtCPYCKek 279 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIV--------GKKQTCPYCKEK 279 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheee--------cCCCCCchHHHH
Confidence 345678999998775422 33379999999999999753 235799999975
No 65
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.23 E-value=0.0056 Score=41.78 Aligned_cols=42 Identities=21% Similarity=0.612 Sum_probs=30.7
Q ss_pred ccccccc--CCCCceeecCCC-----CcccHHHHHHHHHHhhhcccCCCCCCCCCCCC
Q 045854 20 PCPICLG--PVVEDSYLDKCF-----HKFCYNCIVHWTKVVASKHSSLLSSVKCPLCK 70 (272)
Q Consensus 20 ~CpICl~--~~~~p~~l~~Cg-----H~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr 70 (272)
.|.||++ .-.++ ...||. |.++..|+.+|+... +...||+|+
T Consensus 1 ~CrIC~~~~~~~~~-l~~PC~C~G~~~~vH~~Cl~~W~~~~--------~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDP-LVSPCRCKGSLKYVHQECLERWINES--------GNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCe-eEeccccCCchhHHHHHHHHHHHHHc--------CCCcCCCCC
Confidence 4889997 33344 455885 679999999999742 245899995
No 66
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.0041 Score=58.03 Aligned_cols=47 Identities=26% Similarity=0.584 Sum_probs=39.9
Q ss_pred CCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
.....||+|+....+|.++..-|-+||+.|+..++.. ...||+-..+
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~----------~~~CPVT~~p 344 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN----------YGHCPVTGYP 344 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHh----------cCCCCccCCc
Confidence 3456899999999999999888999999999999883 6899975443
No 67
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.0029 Score=60.17 Aligned_cols=46 Identities=26% Similarity=0.649 Sum_probs=33.5
Q ss_pred CCcccccccCCCC---ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCC
Q 045854 18 PNPCPICLGPVVE---DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCK 70 (272)
Q Consensus 18 ~~~CpICl~~~~~---p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr 70 (272)
...|.||.+...+ -..+..|||+|+..|+.+|+.... ....||+|+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~P-------s~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDP-------SNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCC-------ccCCCCcee
Confidence 3579999665533 122336999999999999998521 337999998
No 68
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=95.80 E-value=0.0083 Score=41.14 Aligned_cols=48 Identities=19% Similarity=0.514 Sum_probs=25.8
Q ss_pred CcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 19 NPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 19 ~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
+.|||....+..|+....|.|.-|++ +..|+.....+ +...||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~-----~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRT-----PKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS--------B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhcc-----CCeECcCCcCc
Confidence 57999999999999999999987775 33455432222 34789999863
No 69
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.78 E-value=0.0024 Score=57.22 Aligned_cols=42 Identities=31% Similarity=0.709 Sum_probs=30.5
Q ss_pred cccccccCC-CCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 20 PCPICLGPV-VEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 20 ~CpICl~~~-~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
.|--|..-. .++-+++.|+|+||..|...-. ...||+|+.++
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~------------~~~C~lCkk~i 47 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASS------------PDVCPLCKKSI 47 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCC------------cccccccccee
Confidence 465565433 5678899999999999975421 23899999873
No 70
>smart00311 PWI PWI, domain in splicing factors.
Probab=95.43 E-value=0.053 Score=40.03 Aligned_cols=63 Identities=14% Similarity=0.299 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHhHhhcccchHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhccccccchhhhHHHHHHHH
Q 045854 138 QWLQSWLRREIQAVMQEEDVEIVVHHILGVVDSFLKRNKQRCQMGTPETKEEDFKALVSDAARPFLMARTDRFVNEMQLF 217 (272)
Q Consensus 138 ~Rl~~Wl~REL~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~~~~fl~~~t~~F~HEl~~F 217 (272)
..+.+|+.+.+.-++|-+| +.++.||++.+++. ..| ++ +...+..++...|+.|+-||+.-
T Consensus 7 ~~lk~WI~~kv~e~LG~~d-~~vvd~i~~~l~~~----------~~~----~~----l~~~L~~~~f~da~~Fv~~Lw~~ 67 (74)
T smart00311 7 DEIKPWITKKVIEFLGFEE-DTLVEFILSQIRQH----------KGP----QA----KLLQINLTGFEDAEEFVDKLWRL 67 (74)
T ss_pred HHHHHHHHHHHHHHHCCCh-HHHHHHHHHHHHhC----------CCh----HH----HHHHHHhhcchhHHHHHHHHHHH
Confidence 5688999999999998665 46778888887641 111 22 22345666666799999999876
Q ss_pred Hh
Q 045854 218 LA 219 (272)
Q Consensus 218 a~ 219 (272)
+-
T Consensus 68 l~ 69 (74)
T smart00311 68 LI 69 (74)
T ss_pred HH
Confidence 53
No 71
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=95.05 E-value=0.019 Score=47.21 Aligned_cols=53 Identities=28% Similarity=0.544 Sum_probs=42.0
Q ss_pred CCCcccccccCCCCceeecC---CCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccce
Q 045854 17 NPNPCPICLGPVVEDSYLDK---CFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSI 76 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~~---CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~ 76 (272)
.-..|-||.+...+.-++.| ||-..|..|-...++..+ -.+.||.|++.+.+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~-------~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCN-------LYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcc-------cCCCCCccccccccc
Confidence 35689999998888767654 899999999999777533 468999999987553
No 72
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.01 E-value=0.024 Score=51.69 Aligned_cols=50 Identities=28% Similarity=0.423 Sum_probs=39.5
Q ss_pred CCCCCCcccccccCCCC---ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 14 SSENPNPCPICLGPVVE---DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~---p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
.......|||....+.. -+.+.+|||+|+..++.+.-. ...||+|..++.
T Consensus 109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~-----------~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 109 NSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKK-----------SKKCPVCGKPFT 161 (260)
T ss_pred cCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcc-----------cccccccCCccc
Confidence 34567899999998853 456779999999999988731 357999998864
No 73
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.96 E-value=0.037 Score=52.27 Aligned_cols=55 Identities=29% Similarity=0.658 Sum_probs=40.1
Q ss_pred CCCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccce
Q 045854 13 CSSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSI 76 (272)
Q Consensus 13 ~~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~ 76 (272)
...++...|.||-+.+.-...+ ||+|..|-.|..+.-..- ....||+||++...+
T Consensus 56 dtDEen~~C~ICA~~~TYs~~~-PC~H~~CH~Ca~RlRALY--------~~K~C~~CrTE~e~V 110 (493)
T COG5236 56 DTDEENMNCQICAGSTTYSARY-PCGHQICHACAVRLRALY--------MQKGCPLCRTETEAV 110 (493)
T ss_pred ccccccceeEEecCCceEEEec-cCCchHHHHHHHHHHHHH--------hccCCCccccccceE
Confidence 3445667899999988766444 999999999987742211 247999999876443
No 74
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.70 E-value=0.025 Score=51.11 Aligned_cols=48 Identities=13% Similarity=0.248 Sum_probs=40.6
Q ss_pred CCCCcccccccCCCCc---eeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 16 ENPNPCPICLGPVVED---SYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p---~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
+....||+|.+.+.+. +++.+|||++|..|+...+.. ...||+|-.++
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~----------D~v~pv~d~pl 269 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK----------DMVDPVTDKPL 269 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc----------cccccCCCCcC
Confidence 3567899999999874 457799999999999999873 67999998776
No 75
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.53 E-value=0.023 Score=38.76 Aligned_cols=44 Identities=23% Similarity=0.570 Sum_probs=20.6
Q ss_pred ccccccCCCCc-eee--cCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 21 CPICLGPVVED-SYL--DKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 21 CpICl~~~~~p-~~l--~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
||+|.+.+... ..+ =+||+..|..|....++. ....||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~---------~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN---------EGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS---------S-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc---------cCCCCCCCCCCC
Confidence 78898887321 111 268999999998776542 367999999864
No 76
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.93 E-value=0.019 Score=59.07 Aligned_cols=45 Identities=27% Similarity=0.788 Sum_probs=35.6
Q ss_pred CcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 19 NPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 19 ~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
..|.||++ .+..+++.|+|.||..|+...+... ....||+|+..+
T Consensus 455 ~~c~ic~~--~~~~~it~c~h~~c~~c~~~~i~~~--------~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD--LDSFFITRCGHDFCVECLKKSIQQS--------ENAPCPLCRNVL 499 (674)
T ss_pred cccccccc--cccceeecccchHHHHHHHhccccc--------cCCCCcHHHHHH
Confidence 78999999 4455777999999999999977641 233799999764
No 77
>PHA03096 p28-like protein; Provisional
Probab=93.71 E-value=0.031 Score=51.80 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=33.9
Q ss_pred CcccccccCCCCc-------eeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 19 NPCPICLGPVVED-------SYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 19 ~~CpICl~~~~~p-------~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
..|.||++..... ..+..|.|.||..|+..|..... .....+.||.|+..+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~----~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESL----YKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhh----hcccCccccchhhHH
Confidence 5799999876532 34558999999999999987422 122334555555443
No 78
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=93.56 E-value=0.054 Score=50.53 Aligned_cols=48 Identities=27% Similarity=0.557 Sum_probs=38.1
Q ss_pred CCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccce
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSI 76 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~ 76 (272)
.+-+.||||.+.+..|+..-.=||.-|..|-.+. ..+||.|+.++..+
T Consensus 46 ~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~-------------~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV-------------SNKCPTCRLPIGNI 93 (299)
T ss_pred hhhccCchhhccCcccceecCCCcEehhhhhhhh-------------cccCCccccccccH
Confidence 3457899999999999776344999999997643 46899999987643
No 79
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.33 E-value=0.037 Score=38.72 Aligned_cols=44 Identities=30% Similarity=0.548 Sum_probs=32.5
Q ss_pred CCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 18 PNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 18 ~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
...|-.|...-...+.+ +|||..|..|..-+- -..||+|.+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~-pCgH~I~~~~f~~~r------------YngCPfC~~~~~ 50 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVL-PCGHLICDNCFPGER------------YNGCPFCGTPFE 50 (55)
T ss_pred ceeEEEccccccccccc-cccceeeccccChhh------------ccCCCCCCCccc
Confidence 34577777766666455 899999999976553 368999998764
No 80
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=0.025 Score=52.64 Aligned_cols=45 Identities=29% Similarity=0.564 Sum_probs=34.3
Q ss_pred CcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 045854 19 NPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVS 75 (272)
Q Consensus 19 ~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~ 75 (272)
..|.-|--++..--++.+|.|+||++|...- ..+.||.|-..+..
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~------------~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARSD------------SDKICPLCDDRVQR 135 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhcC------------ccccCcCcccHHHH
Confidence 4578888877766677799999999997542 24689999876643
No 81
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=93.12 E-value=0.14 Score=47.31 Aligned_cols=66 Identities=18% Similarity=0.388 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHhHhhcccchHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhccccccc-hhhhHHHHHHH
Q 045854 138 QWLQSWLRREIQAVMQEEDVEIVVHHILGVVDSFLKRNKQRCQMGTPETKEEDFKALVSDAARPFLMA-RTDRFVNEMQL 216 (272)
Q Consensus 138 ~Rl~~Wl~REL~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~~~~fl~~-~t~~F~HEl~~ 216 (272)
.=|.|||---|.-||+=+| ++|+++|++.|+.. +. ...+. ++=-|..||-+ +|..|+-||++
T Consensus 43 eVlkPWItkrvneilgfED-dVViefvynqLee~-k~--ldpkk-------------mQiNlTGFLngrnAreFmgeLW~ 105 (354)
T KOG2146|consen 43 EVLKPWITKRVNEILGFED-DVVIEFVYNQLEEA-KN--LDPKK-------------MQINLTGFLNGRNAREFMGELWS 105 (354)
T ss_pred hhhhHHHHHHHHHhhcccc-chhHHHHHHHHhhh-cC--CCchh-------------eeeeeehhcccccHHHHHHHHHH
Confidence 4478999999999998655 68889999887753 11 11111 11135889985 69999999999
Q ss_pred HHhC
Q 045854 217 FLAS 220 (272)
Q Consensus 217 Fa~S 220 (272)
-|-|
T Consensus 106 LliS 109 (354)
T KOG2146|consen 106 LLIS 109 (354)
T ss_pred HHHh
Confidence 9977
No 82
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.69 E-value=0.09 Score=48.50 Aligned_cols=45 Identities=22% Similarity=0.658 Sum_probs=34.1
Q ss_pred cccccccCC-CCc---eeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 20 PCPICLGPV-VED---SYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 20 ~CpICl~~~-~~p---~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
.||+|.... .+| ..+.+|+|..|-+|+...+.. +...||.|...+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~---------g~~~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSL---------GPAQCPECMVIL 50 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhc---------CCCCCCcccchh
Confidence 599998633 343 234499999999999998764 578999998754
No 83
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.55 E-value=0.079 Score=48.76 Aligned_cols=46 Identities=30% Similarity=0.657 Sum_probs=36.0
Q ss_pred CCcccccccCCCC------ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 18 PNPCPICLGPVVE------DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 18 ~~~CpICl~~~~~------p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
...|-||-+.+.. |..+ .|||++|..|+...... ....||.||.+.
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~---------~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGN---------SRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCccc-ccCceehHhHHHHHhcC---------ceeeccCCCCcc
Confidence 3569999887754 5444 69999999999988774 457889999874
No 84
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.99 E-value=0.052 Score=54.90 Aligned_cols=51 Identities=27% Similarity=0.502 Sum_probs=36.9
Q ss_pred CCCcccccccCCCC----ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccceeeccc
Q 045854 17 NPNPCPICLGPVVE----DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGYD 81 (272)
Q Consensus 17 ~~~~CpICl~~~~~----p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~~~~~ 81 (272)
+-+.|+||+..+.. |+.+ .|||+.|..|+..... ..|| |+..-+++.+..+
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl-~cghtic~~c~~~lyn------------~scp-~~~De~~~~~~~~ 64 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSL-QCGHTICGHCVQLLYN------------ASCP-TKRDEDSSLMQLK 64 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccc-cccchHHHHHHHhHhh------------ccCC-CCccccchhcChh
Confidence 45689999887754 6566 6999999999987654 5899 7655455544443
No 85
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.84 E-value=0.12 Score=48.69 Aligned_cols=51 Identities=22% Similarity=0.593 Sum_probs=35.0
Q ss_pred CCCCCCcccccccCCCC--c-eeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 14 SSENPNPCPICLGPVVE--D-SYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~--p-~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
+.++++.||.|.+++.. . ..--+||-..|.-|....-+. -...||-||...
T Consensus 10 sedeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~---------lngrcpacrr~y 63 (480)
T COG5175 10 SEDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN---------LNGRCPACRRKY 63 (480)
T ss_pred cccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhh---------ccCCChHhhhhc
Confidence 34455569999998753 2 122368888888887776553 357899999764
No 86
>PHA02862 5L protein; Provisional
Probab=91.78 E-value=0.21 Score=41.69 Aligned_cols=45 Identities=27% Similarity=0.527 Sum_probs=33.9
Q ss_pred CcccccccCCCCceeecCCCCc-----ccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 19 NPCPICLGPVVEDSYLDKCFHK-----FCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 19 ~~CpICl~~~~~p~~l~~CgH~-----FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
..|-||.+.-.+. ..||... -+..|+.+|+.. .+...|++|+.++
T Consensus 3 diCWIC~~~~~e~--~~PC~C~GS~K~VHq~CL~~WIn~--------S~k~~CeLCkteY 52 (156)
T PHA02862 3 DICWICNDVCDER--NNFCGCNEEYKVVHIKCMQLWINY--------SKKKECNLCKTKY 52 (156)
T ss_pred CEEEEecCcCCCC--cccccccCcchhHHHHHHHHHHhc--------CCCcCccCCCCeE
Confidence 5799999986544 3577652 488999999973 2467999999875
No 87
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.74 E-value=0.24 Score=47.37 Aligned_cols=34 Identities=21% Similarity=0.652 Sum_probs=23.5
Q ss_pred cccHHHHHHHHHHhhhccc---CCCCCCCCCCCCccc
Q 045854 40 KFCYNCIVHWTKVVASKHS---SLLSSVKCPLCKTEN 73 (272)
Q Consensus 40 ~FC~~Ci~~w~~~~~~k~~---~~~~~~~CPlCr~~~ 73 (272)
.-|..|+-+|+...+.++. .-++...||+||+.|
T Consensus 314 mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 314 MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 4489999999875432221 234567899999975
No 88
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=91.66 E-value=0.07 Score=41.17 Aligned_cols=32 Identities=25% Similarity=0.566 Sum_probs=25.8
Q ss_pred CCCCcccccccCCCCc-eeecCCCCcccHHHHH
Q 045854 16 ENPNPCPICLGPVVED-SYLDKCFHKFCYNCIV 47 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p-~~l~~CgH~FC~~Ci~ 47 (272)
++...|++|...+.+. ....||||.|+..|+.
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 4567799999999864 3455999999999975
No 89
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=91.51 E-value=0.094 Score=50.95 Aligned_cols=35 Identities=29% Similarity=0.563 Sum_probs=30.6
Q ss_pred CCCCcccccccCCCCceeecCCCCcccHHHHHHHHH
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTK 51 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~ 51 (272)
++++.|+||..-+.+|+.+ +|+|+.|..|....+.
T Consensus 2 eeelkc~vc~~f~~epiil-~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIIL-PCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEe-ecccHHHHHHHHhhcc
Confidence 5678999999999999777 7999999999987654
No 90
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.39 E-value=0.053 Score=58.56 Aligned_cols=47 Identities=30% Similarity=0.689 Sum_probs=39.4
Q ss_pred CCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
.....|+||++.+.+...+..|||.+|..|...|+.. +..||+|+..
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~----------~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA----------SSRCPICKSI 1197 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH----------hccCcchhhh
Confidence 3566899999999865566679999999999999984 6799999854
No 91
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=91.04 E-value=0.37 Score=40.87 Aligned_cols=48 Identities=19% Similarity=0.409 Sum_probs=34.7
Q ss_pred CCCCcccccccCCCCceeecCCCCc-----ccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHK-----FCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~-----FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
..+..|-||.+.-.. ...||... -+.+|+.+|+.. ++...|++|++++
T Consensus 6 ~~~~~CRIC~~~~~~--~~~PC~CkGs~k~VH~sCL~rWi~~--------s~~~~CeiC~~~Y 58 (162)
T PHA02825 6 LMDKCCWICKDEYDV--VTNYCNCKNENKIVHKECLEEWINT--------SKNKSCKICNGPY 58 (162)
T ss_pred CCCCeeEecCCCCCC--ccCCcccCCCchHHHHHHHHHHHhc--------CCCCcccccCCeE
Confidence 345679999987643 23467653 289999999984 2467899999863
No 92
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.48 E-value=0.11 Score=53.99 Aligned_cols=44 Identities=25% Similarity=0.472 Sum_probs=37.5
Q ss_pred CCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 18 PNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 18 ~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
...|.+|-..+.-|.+--.|||.|+..|+.. +...||.|+.+..
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e~-------------~~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLED-------------KEDKCPKCLPELR 883 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhcc-------------CcccCCccchhhh
Confidence 3589999999999988889999999999972 3679999998543
No 93
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.23 E-value=0.1 Score=50.06 Aligned_cols=49 Identities=20% Similarity=0.400 Sum_probs=36.4
Q ss_pred CCcccccccCCC---CceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 18 PNPCPICLGPVV---EDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 18 ~~~CpICl~~~~---~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
.+.|..|-+.+- ......||.|.|+..|+.+++.+. ...+||-||+-..
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n--------~~rsCP~CrklrS 416 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENN--------GTRSCPNCRKLRS 416 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhC--------CCCCCccHHHHHh
Confidence 567999987663 223445999999999999998742 4679999995433
No 94
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=90.09 E-value=0.23 Score=54.62 Aligned_cols=56 Identities=21% Similarity=0.447 Sum_probs=39.3
Q ss_pred CCCCCCcccccccCC--CCceeecCCCCcccHHHHHHHHHHhhhcccCCCC-----CCCCCCCCcccc
Q 045854 14 SSENPNPCPICLGPV--VEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLS-----SVKCPLCKTENV 74 (272)
Q Consensus 14 ~~~~~~~CpICl~~~--~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~-----~~~CPlCr~~~~ 74 (272)
.-+.++.|-||...- ..|.....|+|.|++.|..+.++. ...|. -..||+|+.++.
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~-----RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLEN-----RWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHh-----cccCCeeEEeeeecccccchhh
Confidence 345678899998743 346565689999999999887763 11111 257999998764
No 95
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.86 E-value=0.23 Score=47.95 Aligned_cols=53 Identities=25% Similarity=0.475 Sum_probs=36.7
Q ss_pred CCcccccccCCCC--ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 18 PNPCPICLGPVVE--DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 18 ~~~CpICl~~~~~--p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
...|.||.+.... -....||+|.||..|+..+...... .-..+..+||-++..
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~--eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQ--EGQVSCLKCPDPKCG 238 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhh--cceeeeecCCCCCCc
Confidence 4679999987754 3455699999999999998764321 111234688877654
No 96
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=89.65 E-value=0.13 Score=47.82 Aligned_cols=64 Identities=19% Similarity=0.396 Sum_probs=40.5
Q ss_pred CCCcccccccCCCC-c-eeecCCCCcccHHHHHHHHHHhh----------hc---ccCCCCCCCCCCCCccccceeecc
Q 045854 17 NPNPCPICLGPVVE-D-SYLDKCFHKFCYNCIVHWTKVVA----------SK---HSSLLSSVKCPLCKTENVSIIHGY 80 (272)
Q Consensus 17 ~~~~CpICl~~~~~-p-~~l~~CgH~FC~~Ci~~w~~~~~----------~k---~~~~~~~~~CPlCr~~~~~~~~~~ 80 (272)
....|.|||--|.. + .+.++|.|-|++.|+.+++...- .+ |..-.-...||+|+..+..-...+
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~sl 192 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEENSL 192 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccccce
Confidence 34579999988864 3 45669999999999977654211 00 111123456999998764433333
No 97
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.52 E-value=0.45 Score=42.62 Aligned_cols=62 Identities=21% Similarity=0.543 Sum_probs=44.8
Q ss_pred CCCCcccccccCCCC--ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccceeecc
Q 045854 16 ENPNPCPICLGPVVE--DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGY 80 (272)
Q Consensus 16 ~~~~~CpICl~~~~~--p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~~~~ 80 (272)
+....|..|-..+.. .+.+ .|.|.|+..|+.+|..+.. .......-.||.|..++...+.-+
T Consensus 48 DY~pNC~LC~t~La~gdt~RL-vCyhlfHW~ClneraA~lP--anTAPaGyqCP~Cs~eiFPp~Nlv 111 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRL-VCYHLFHWKCLNERAANLP--ANTAPAGYQCPCCSQEIFPPINLV 111 (299)
T ss_pred CCCCCCceeCCccccCcceee-hhhhhHHHHHhhHHHhhCC--CcCCCCcccCCCCCCccCCCcccc
Confidence 345579999998864 4455 6999999999999976421 234456778999999876555444
No 98
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.35 E-value=0.22 Score=45.95 Aligned_cols=36 Identities=28% Similarity=0.750 Sum_probs=30.4
Q ss_pred CCCCcccccccCCCCceeecCC----CCcccHHHHHHHHHH
Q 045854 16 ENPNPCPICLGPVVEDSYLDKC----FHKFCYNCIVHWTKV 52 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~C----gH~FC~~Ci~~w~~~ 52 (272)
...+.|.+|.+.+++.-+. .| .|.|||.|-.+.+|.
T Consensus 266 ~apLcCTLC~ERLEDTHFV-QCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFV-QCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CCceeehhhhhhhccCcee-ecCCCcccceecccCHHHHHh
Confidence 4568999999999997666 46 789999999998885
No 99
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.65 E-value=0.15 Score=45.09 Aligned_cols=43 Identities=26% Similarity=0.542 Sum_probs=32.2
Q ss_pred ccccccCCCCceeecCCCC-cccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccceee
Q 045854 21 CPICLGPVVEDSYLDKCFH-KFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIH 78 (272)
Q Consensus 21 CpICl~~~~~p~~l~~CgH-~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~~ 78 (272)
|-.|...-.. +.+.||.| .+|..|-.. ...||+|+.+..+-++
T Consensus 161 Cr~C~~~~~~-VlllPCrHl~lC~~C~~~--------------~~~CPiC~~~~~s~~~ 204 (207)
T KOG1100|consen 161 CRKCGEREAT-VLLLPCRHLCLCGICDES--------------LRICPICRSPKTSSVE 204 (207)
T ss_pred ceecCcCCce-EEeecccceEeccccccc--------------CccCCCCcChhhceee
Confidence 8888887666 46669999 889999543 3579999987655443
No 100
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.16 E-value=0.25 Score=51.71 Aligned_cols=37 Identities=24% Similarity=0.557 Sum_probs=30.0
Q ss_pred CCCCCcccccccCCC-CceeecCCCCcccHHHHHHHHH
Q 045854 15 SENPNPCPICLGPVV-EDSYLDKCFHKFCYNCIVHWTK 51 (272)
Q Consensus 15 ~~~~~~CpICl~~~~-~p~~l~~CgH~FC~~Ci~~w~~ 51 (272)
.+....|.+|..++. .|-.+.+|||.|+..|+.+-..
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 345678999999775 5667779999999999988654
No 101
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=87.69 E-value=0.14 Score=46.22 Aligned_cols=48 Identities=21% Similarity=0.684 Sum_probs=34.6
Q ss_pred CCCcccccccCC-CCc---eeecC-CCCcccHHHHHHHHHHhhhcccCCCCCCCCC--CCCccc
Q 045854 17 NPNPCPICLGPV-VED---SYLDK-CFHKFCYNCIVHWTKVVASKHSSLLSSVKCP--LCKTEN 73 (272)
Q Consensus 17 ~~~~CpICl~~~-~~p---~~l~~-CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CP--lCr~~~ 73 (272)
.+..||+|...- -+| ..+.| |.|..|-+|+.+.+.. +...|| -|.+.+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~---------GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSR---------GPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcC---------CCCCCCCccHHHHH
Confidence 345899998633 333 22334 9999999999998874 567899 786644
No 102
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=87.49 E-value=0.4 Score=50.12 Aligned_cols=54 Identities=24% Similarity=0.672 Sum_probs=39.0
Q ss_pred CCCcccccccCCCCcee---ecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 17 NPNPCPICLGPVVEDSY---LDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~---l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
....|.||.+.+....- -..|-|+|+..||..|-.. +. ........||.|....
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs-~e--k~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARS-SE--KTGQDGWRCPACQSVS 246 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHH-hh--hccCccccCCcccchh
Confidence 45689999998864211 2368999999999999875 22 2333578999998543
No 103
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=87.29 E-value=0.53 Score=31.68 Aligned_cols=41 Identities=32% Similarity=0.793 Sum_probs=24.8
Q ss_pred ccccccCCCCc-eeecCCCCc-----ccHHHHHHHHHHhhhcccCCCCCCCCCCC
Q 045854 21 CPICLGPVVED-SYLDKCFHK-----FCYNCIVHWTKVVASKHSSLLSSVKCPLC 69 (272)
Q Consensus 21 CpICl~~~~~p-~~l~~CgH~-----FC~~Ci~~w~~~~~~k~~~~~~~~~CPlC 69 (272)
|-||++.-... ..+.||.-. .+..|+.+|+... +..+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~--------~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRES--------GNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHH--------T-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhc--------CCCcCCCC
Confidence 67888765532 245577653 4789999999852 35679887
No 104
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.00 E-value=0.57 Score=42.49 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=31.4
Q ss_pred CCCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHH
Q 045854 13 CSSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTK 51 (272)
Q Consensus 13 ~~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~ 51 (272)
.+..+-+.|..||.++.+|+.. +=||.||..||.+++-
T Consensus 38 DsiK~FdcCsLtLqPc~dPvit-~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQPCRDPVIT-PDGYLFDREAILEYIL 75 (303)
T ss_pred cccCCcceeeeecccccCCccC-CCCeeeeHHHHHHHHH
Confidence 3445668899999999999554 8999999999998754
No 105
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.52 E-value=0.48 Score=45.75 Aligned_cols=48 Identities=27% Similarity=0.552 Sum_probs=33.6
Q ss_pred CCCcccccccCCCCc---eeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCC
Q 045854 17 NPNPCPICLGPVVED---SYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPL 68 (272)
Q Consensus 17 ~~~~CpICl~~~~~p---~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPl 68 (272)
....|.||......+ .....|+|.||..|+.+.++.. ...+....||-
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~----~~~~~~~~C~~ 195 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK----LLSGTVIRCPH 195 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh----hccCCCccCCC
Confidence 467899999433221 1234799999999999998852 44556778875
No 106
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.00 E-value=0.55 Score=45.14 Aligned_cols=49 Identities=22% Similarity=0.378 Sum_probs=35.3
Q ss_pred CCCcccccccCC--CCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 17 NPNPCPICLGPV--VEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 17 ~~~~CpICl~~~--~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
.-..|||=.+.- .+|.....|||+.|..-+.+..+.. ..+++||-|-..
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng-------~~sfKCPYCP~e 383 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNG-------SQSFKCPYCPVE 383 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCC-------CeeeeCCCCCcc
Confidence 346899866544 3455555899999999999987741 125899999654
No 107
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=84.20 E-value=0.5 Score=39.02 Aligned_cols=34 Identities=21% Similarity=0.513 Sum_probs=26.7
Q ss_pred CCcccccccCCCC--ceeecCCCC------cccHHHHHHHHH
Q 045854 18 PNPCPICLGPVVE--DSYLDKCFH------KFCYNCIVHWTK 51 (272)
Q Consensus 18 ~~~CpICl~~~~~--p~~l~~CgH------~FC~~Ci~~w~~ 51 (272)
...|.||++.+.+ -++..+||- .||..|+.+|-.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 5679999998877 555556764 699999999954
No 108
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=83.48 E-value=0.89 Score=47.35 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=40.3
Q ss_pred CCcccccccCCCCc------eeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccceeecccC
Q 045854 18 PNPCPICLGPVVED------SYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGYDG 82 (272)
Q Consensus 18 ~~~CpICl~~~~~p------~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~~~~~~ 82 (272)
..+|++|...+.++ ..+..|+|.||..||..|....- .......|++|..-|.++-.....
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~----~~~k~c~H~FC~~Ci~sWsR~aqT 162 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLE----ESEKHTAHYFCEECVGSWSRCAQT 162 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhh----ccccccccccHHHHhhhhhhhccc
Confidence 45677777666552 12235999999999999987422 112346789998887666555543
No 109
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=83.00 E-value=0.24 Score=50.76 Aligned_cols=49 Identities=37% Similarity=0.660 Sum_probs=37.2
Q ss_pred CCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 17 NPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
-...|+||...+..|+.+ .|.|.||..|+..-+..+. ....||+|+..+
T Consensus 20 k~lEc~ic~~~~~~p~~~-kc~~~~l~~~~n~~f~~~~-------~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLL-KCDHIFLKFCLNKLFESKK-------GPKQCALCKSDI 68 (684)
T ss_pred hhccCCceeEEeeccchh-hhhHHHHhhhhhceeeccC-------ccccchhhhhhh
Confidence 357899999999999555 7999999999877443211 257899998654
No 110
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.90 E-value=1.4 Score=38.16 Aligned_cols=59 Identities=19% Similarity=0.407 Sum_probs=35.2
Q ss_pred CCcccccccCCCCc------eeecCCCCcccHHHHHHHHHHhhhcccCCC-CCCCCCCCCccccce
Q 045854 18 PNPCPICLGPVVED------SYLDKCFHKFCYNCIVHWTKVVASKHSSLL-SSVKCPLCKTENVSI 76 (272)
Q Consensus 18 ~~~CpICl~~~~~p------~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~-~~~~CPlCr~~~~~~ 76 (272)
...|.||...--+- .--..||..|+.-|+..|+..-.....+.. --..||.|..++...
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 34577776432221 112279999999999999975332211111 114799999887543
No 111
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.67 E-value=2.4 Score=38.79 Aligned_cols=64 Identities=22% Similarity=0.497 Sum_probs=43.2
Q ss_pred CCCCCCCcccccccCCCCcee---ecCCCC-----cccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccceee
Q 045854 13 CSSENPNPCPICLGPVVEDSY---LDKCFH-----KFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIH 78 (272)
Q Consensus 13 ~~~~~~~~CpICl~~~~~p~~---l~~CgH-----~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~~ 78 (272)
++.+.+..|-||...-++-.. ..||.. --+..|+..|+..++ .+...+...||-|+++..-.++
T Consensus 15 ~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~--~~n~~q~V~C~QCqTEYiiv~P 86 (293)
T KOG3053|consen 15 DNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQ--RGNPLQTVSCPQCQTEYIIVFP 86 (293)
T ss_pred CccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHh--cCCCCceeechhhcchheeecc
Confidence 445567789999987665322 336754 358899999997533 1445567899999997644433
No 112
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=75.85 E-value=4.3 Score=42.70 Aligned_cols=49 Identities=22% Similarity=0.607 Sum_probs=35.1
Q ss_pred CCCCcccccccCC--CCceeecCCCCc-----ccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 16 ENPNPCPICLGPV--VEDSYLDKCFHK-----FCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 16 ~~~~~CpICl~~~--~~p~~l~~CgH~-----FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
+++..|.||...- .+|..- ||..+ .+.+|+.+|+.. +...+|-+|+.++
T Consensus 10 ~d~~~CRICr~e~~~d~pLfh-PCKC~GSIkYiH~eCL~eW~~~--------s~~~kCdiChy~~ 65 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFH-PCKCSGSIKYIHRECLMEWMEC--------SGTKKCDICHYEY 65 (1175)
T ss_pred ccchhceeecCCCCCCCcCcc-cccccchhHHHHHHHHHHHHhc--------CCCcceeeeccee
Confidence 3457899998643 345443 78764 378999999983 3467999998764
No 113
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.58 E-value=2.5 Score=41.45 Aligned_cols=55 Identities=24% Similarity=0.439 Sum_probs=37.5
Q ss_pred CCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCC-CCCCCC--CCccc
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLS-SVKCPL--CKTEN 73 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~-~~~CPl--Cr~~~ 73 (272)
.....|.||.+.+........|||.||..|+..++.. |...... ..+||. |.+.+
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~---kI~~~~~~~i~cp~~~C~a~v 125 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT---KIHEGEEAKIKCPAHGCPALV 125 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh---eeeccccccccCCCCCccccC
Confidence 4457899999988764455589999999999998874 2222211 146664 66654
No 114
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=71.61 E-value=3.1 Score=27.44 Aligned_cols=41 Identities=24% Similarity=0.591 Sum_probs=21.5
Q ss_pred ccccccCCCCceeec--CCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCC
Q 045854 21 CPICLGPVVEDSYLD--KCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLC 69 (272)
Q Consensus 21 CpICl~~~~~p~~l~--~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlC 69 (272)
|.+|.+....-..=. .|+-.++..|+..+++.. +...||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~--------~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHR--------SNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT---------SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcC--------CCCCCcCC
Confidence 667777666543332 488889999999998742 23379987
No 115
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=71.43 E-value=2.5 Score=39.04 Aligned_cols=44 Identities=27% Similarity=0.551 Sum_probs=33.0
Q ss_pred CCcccccccCCCC---ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCc
Q 045854 18 PNPCPICLGPVVE---DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKT 71 (272)
Q Consensus 18 ~~~CpICl~~~~~---p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~ 71 (272)
...||||.+.+.. .+...+|||.-...|....... ...||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~----------~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE----------GYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc----------CCCCCcccc
Confidence 4459999986633 2344489999889888887662 489999988
No 116
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.56 E-value=2.2 Score=39.69 Aligned_cols=37 Identities=19% Similarity=0.441 Sum_probs=24.7
Q ss_pred CCCcccHHHHHHHHHHhhhccc---CCCCCCCCCCCCccc
Q 045854 37 CFHKFCYNCIVHWTKVVASKHS---SLLSSVKCPLCKTEN 73 (272)
Q Consensus 37 CgH~FC~~Ci~~w~~~~~~k~~---~~~~~~~CPlCr~~~ 73 (272)
|...-|.+|+.+|+...+++.- -..++..||.||+.+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 4556689999999864332211 123568999999976
No 117
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=66.19 E-value=6.4 Score=26.87 Aligned_cols=39 Identities=33% Similarity=0.701 Sum_probs=22.1
Q ss_pred CCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 18 PNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 18 ~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
...||.|...+... .+ +.| | ..+|...+....||+|...
T Consensus 2 ~f~CP~C~~~~~~~-~L--~~H-----~--------~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSES-SL--VEH-----C--------EDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCHH-HH--HHH-----H--------HhHCcCCCCCccCCCchhh
Confidence 56899998844432 22 111 1 1234334456899999863
No 118
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.85 E-value=2.2 Score=39.78 Aligned_cols=52 Identities=25% Similarity=0.728 Sum_probs=42.4
Q ss_pred CCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccee
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSII 77 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~ 77 (272)
..+..|-||...+..|.....|+|.||+.|...|... ...||.|+......+
T Consensus 103 ~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~----------~~~~~d~~~~~~pv~ 154 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAM----------GNDCPDCRGKISPVL 154 (324)
T ss_pred CCccceeeeeeeEEecccccCceeeeeecCCchhhhh----------hhccchhhcCcCcee
Confidence 4567899999999999888889999999999999874 568998887654443
No 119
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=63.65 E-value=2.3 Score=28.99 Aligned_cols=43 Identities=28% Similarity=0.666 Sum_probs=23.0
Q ss_pred cccccccCCCCceeecCCC-CcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 045854 20 PCPICLGPVVEDSYLDKCF-HKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVS 75 (272)
Q Consensus 20 ~CpICl~~~~~p~~l~~Cg-H~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~ 75 (272)
.|.-|.-.-.. .+ .|. |-.|..|+...+. .+..||+|+.++..
T Consensus 4 nCKsCWf~~k~--Li-~C~dHYLCl~CLt~ml~----------~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFANKG--LI-KCSDHYLCLNCLTLMLS----------RSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S--SS--EE-E-SS-EEEHHHHHHT-S----------SSSEETTTTEE---
T ss_pred cChhhhhcCCC--ee-eecchhHHHHHHHHHhc----------cccCCCcccCcCcc
Confidence 45556543332 33 574 5679999998877 47899999987643
No 120
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=63.22 E-value=0.31 Score=35.84 Aligned_cols=42 Identities=26% Similarity=0.528 Sum_probs=23.9
Q ss_pred CcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccce
Q 045854 19 NPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSI 76 (272)
Q Consensus 19 ~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~ 76 (272)
..||.|..++.-. . ++-+|..|-..+.+ ...||.|..++..+
T Consensus 2 ~~CP~C~~~L~~~----~-~~~~C~~C~~~~~~-----------~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 2 NTCPKCQQELEWQ----G-GHYHCEACQKDYKK-----------EAFCPDCGQPLEVL 43 (70)
T ss_dssp -B-SSS-SBEEEE----T-TEEEETTT--EEEE-----------EEE-TTT-SB-EEE
T ss_pred CcCCCCCCccEEe----C-CEEECcccccccee-----------cccCCCcccHHHHH
Confidence 5799999875532 2 67788888876544 47899999886443
No 121
>PRK09499 sifB secreted effector protein SifB; Provisional
Probab=62.93 E-value=6 Score=36.26 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=33.2
Q ss_pred CCCchHHHHHHHHhhccccccc----hhhhHHHHHHHHHhCCCCh
Q 045854 184 PETKEEDFKALVSDAARPFLMA----RTDRFVNEMQLFLASALNI 224 (272)
Q Consensus 184 ~~~~~~ef~~~~~~~~~~fl~~----~t~~F~HEl~~Fa~Sp~~~ 224 (272)
+.++++-|+..|=|.++.|+.. +|+..+||+ +|+.||=+-
T Consensus 18 ~~~T~esww~~LWEkiKdfFfsTgrakAD~yihEm-~f~~~PP~r 61 (316)
T PRK09499 18 SAISQRSFFTLLWEKIKDFFCDTQRSTADQYIKEL-CDVASPPDA 61 (316)
T ss_pred ccchHHHHHHHHHHHHHHHhhccCcccHHHHHHHH-HcCCCCCcH
Confidence 3467889999999999999984 699999998 688888643
No 122
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=59.32 E-value=8.2 Score=27.16 Aligned_cols=42 Identities=29% Similarity=0.536 Sum_probs=28.7
Q ss_pred cccccccCCCCce-eecCCCC--cccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 20 PCPICLGPVVEDS-YLDKCFH--KFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 20 ~CpICl~~~~~p~-~l~~CgH--~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
.|-.|-..+.... ...-|.+ +||..|....+. ..||-|...+
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~------------~~CPNCgGel 51 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLN------------GVCPNCGGEL 51 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc------------CcCcCCCCcc
Confidence 4666766554321 1223666 899999999875 5899998765
No 123
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=58.28 E-value=5.8 Score=37.40 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=34.0
Q ss_pred CCCcccccccCC--CCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCc
Q 045854 17 NPNPCPICLGPV--VEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKT 71 (272)
Q Consensus 17 ~~~~CpICl~~~--~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~ 71 (272)
.-..||+=.+.. ++|.+...|||+.-..-+....++. ...++||.|-.
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG-------~~~FKCPYCP~ 384 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNG-------VLSFKCPYCPE 384 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcC-------cEEeeCCCCCc
Confidence 346798755433 4555666899999999888887742 14689999964
No 124
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=56.79 E-value=7.1 Score=28.36 Aligned_cols=15 Identities=40% Similarity=1.085 Sum_probs=10.7
Q ss_pred cccHHHHHHHHHHhh
Q 045854 40 KFCYNCIVHWTKVVA 54 (272)
Q Consensus 40 ~FC~~Ci~~w~~~~~ 54 (272)
.||..|+..|....+
T Consensus 11 gFCRNCLskWy~~aA 25 (68)
T PF06844_consen 11 GFCRNCLSKWYREAA 25 (68)
T ss_dssp S--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 599999999998644
No 125
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=56.57 E-value=6.9 Score=34.84 Aligned_cols=48 Identities=21% Similarity=0.488 Sum_probs=37.1
Q ss_pred CCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
+.-..|.+|......-..-..|+-.+...|+.++++ +...||.|..-.
T Consensus 179 dnlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q----------~~~~cphc~d~w 226 (235)
T KOG4718|consen 179 DNLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQ----------RRDICPHCGDLW 226 (235)
T ss_pred HHHHHHhHhHHHhheeeccCcccchhhhHHHHHHhc----------ccCcCCchhccc
Confidence 345679999998877656667777888999999988 367899996443
No 126
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=54.72 E-value=7.8 Score=22.87 Aligned_cols=8 Identities=50% Similarity=1.119 Sum_probs=3.9
Q ss_pred ccccccCC
Q 045854 21 CPICLGPV 28 (272)
Q Consensus 21 CpICl~~~ 28 (272)
||-|...+
T Consensus 3 CP~C~~~V 10 (26)
T PF10571_consen 3 CPECGAEV 10 (26)
T ss_pred CCCCcCCc
Confidence 55555443
No 127
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=53.79 E-value=11 Score=38.84 Aligned_cols=51 Identities=16% Similarity=0.392 Sum_probs=37.5
Q ss_pred CCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 17 NPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
-.+.|||+...+.-|+....|.|.-|+.-. |+-.. ........||+|.+..
T Consensus 305 vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~--~~lq~----n~~~pTW~CPVC~~~~ 355 (636)
T KOG2169|consen 305 VSLNCPLSKMRMSLPARGHTCKHLQCFDAL--SYLQM----NEQKPTWRCPVCQKAA 355 (636)
T ss_pred eEecCCcccceeecCCcccccccceecchh--hhHHh----ccCCCeeeCccCCccc
Confidence 457899999999988888889998888754 32211 3344678999998753
No 128
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=53.40 E-value=7 Score=35.73 Aligned_cols=47 Identities=26% Similarity=0.412 Sum_probs=38.1
Q ss_pred CCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 18 PNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 18 ~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
...|||-..++.+|+....|||.|-..-|...+.. .....||+-..+
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~--------~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCD--------EITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhcc--------CceeecccccCC
Confidence 46899999999999999999999999999988762 135688875443
No 129
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=53.39 E-value=17 Score=34.35 Aligned_cols=38 Identities=21% Similarity=0.537 Sum_probs=22.6
Q ss_pred cCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 35 DKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 35 ~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
.||||..-..=..=|.+. .--|....-...||.|-+.+
T Consensus 376 ~PCGHv~sekt~~YWs~i-plPhGT~~f~a~CPFC~~~L 413 (429)
T KOG3842|consen 376 NPCGHVCSEKTVKYWSQI-PLPHGTHAFHAACPFCATQL 413 (429)
T ss_pred CCcccccchhhhhHhhcC-cCCCccccccccCcchhhhh
Confidence 389996444555556553 22223333457899998764
No 130
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=50.92 E-value=29 Score=27.31 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=21.3
Q ss_pred CCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCc
Q 045854 38 FHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKT 71 (272)
Q Consensus 38 gH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~ 71 (272)
.-.||..||..+....... ........||.|+.
T Consensus 37 ~~~fC~~CL~~ryge~~~e-v~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEE-VLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHH-HhcCCceECCCCCC
Confidence 5579999998876532111 11224578999986
No 131
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=47.81 E-value=25 Score=34.91 Aligned_cols=70 Identities=20% Similarity=0.351 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHhHhhcccchHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhccccccchhhhHHHHHHHH
Q 045854 138 QWLQSWLRREIQAVMQEEDVEIVVHHILGVVDSFLKRNKQRCQMGTPETKEEDFKALVSDAARPFLMARTDRFVNEMQLF 217 (272)
Q Consensus 138 ~Rl~~Wl~REL~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~~~~fl~~~t~~F~HEl~~F 217 (272)
.-|-.||...|.=+. +-|...+..|||+++++ + .++ +|....-.+.|.+||-+.|-.|+--+..|
T Consensus 7 d~Lk~wlsd~lePi~-Dadpsala~yvlal~kk-----d----kse-----~elk~~~~~ql~vfl~~et~pfv~K~fda 71 (526)
T KOG2135|consen 7 DALKDWLSDALEPIC-DADPSALAKYVLALLKK-----D----KSE-----KELKALCIEQLDVFLRQETIPFVDKLFDA 71 (526)
T ss_pred HHHHHHHhhhccCcc-cCChHHHHHHHHHHhhc-----C----CCc-----hhhhhhhHHhcchhhhcccchHHHHHHHh
Confidence 457789998776655 45889999999999876 1 122 23444456778999999999999999999
Q ss_pred HhCCC
Q 045854 218 LASAL 222 (272)
Q Consensus 218 a~Sp~ 222 (272)
+++.=
T Consensus 72 ~~eks 76 (526)
T KOG2135|consen 72 LREKS 76 (526)
T ss_pred hcccc
Confidence 97754
No 132
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.07 E-value=9.5 Score=36.88 Aligned_cols=34 Identities=29% Similarity=0.631 Sum_probs=25.5
Q ss_pred CCCcccccccCCCC-----ceeecCCCCcccHHHHHHHHH
Q 045854 17 NPNPCPICLGPVVE-----DSYLDKCFHKFCYNCIVHWTK 51 (272)
Q Consensus 17 ~~~~CpICl~~~~~-----p~~l~~CgH~FC~~Ci~~w~~ 51 (272)
....||+|.-.+.- -++-. |||.||+.|...|..
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~ 343 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKT 343 (384)
T ss_pred hcCcCcccceeeeecCCcceEEee-ccccchhhcCcchhh
Confidence 35679999876542 34444 999999999999976
No 133
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.83 E-value=16 Score=30.36 Aligned_cols=54 Identities=22% Similarity=0.500 Sum_probs=29.5
Q ss_pred CCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccC--CCCCCCCCCCCcc
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSS--LLSSVKCPLCKTE 72 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~--~~~~~~CPlCr~~ 72 (272)
...++.+|.||+..- +.+-|||. |..|-.+.-.....+... .+-...|-+|+..
T Consensus 61 Gv~ddatC~IC~KTK----FADG~GH~-C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 61 GVGDDATCGICHKTK----FADGCGHN-CSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred ccCcCcchhhhhhcc----cccccCcc-cchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 345678999999742 44579994 555654443322212111 1123457788754
No 134
>COG5460 Uncharacterized conserved protein [Function unknown]
Probab=42.27 E-value=31 Score=25.84 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHhHhhcccchHHHHHHHHHHHHH
Q 045854 138 QWLQSWLRREIQAVMQEEDVEIVVHHILGVVDS 170 (272)
Q Consensus 138 ~Rl~~Wl~REL~~l~~~~~~~~~~~~i~~~l~~ 170 (272)
+|++.+|.||+..-++.-|++|++++|.+-|--
T Consensus 16 ~~i~dYL~~E~~~evg~~~Ae~fleFis~elGp 48 (82)
T COG5460 16 TRIRDYLTRETETEVGKFDAEFFLEFISGELGP 48 (82)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhH
Confidence 789999999999988888899999988766543
No 135
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=41.21 E-value=25 Score=27.10 Aligned_cols=36 Identities=25% Similarity=0.596 Sum_probs=26.5
Q ss_pred CCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 18 PNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 18 ~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
...|-||-..+.+ =||.||..|... ...|.+|...+
T Consensus 44 ~~~C~~CK~~v~q------~g~~YCq~CAYk--------------kGiCamCGKki 79 (90)
T PF10235_consen 44 SSKCKICKTKVHQ------PGAKYCQTCAYK--------------KGICAMCGKKI 79 (90)
T ss_pred Ccccccccccccc------CCCccChhhhcc--------------cCcccccCCee
Confidence 3479999876554 377899999533 36899998765
No 136
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.37 E-value=18 Score=26.80 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=19.3
Q ss_pred CCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 38 FHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 38 gH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
-|+||..|....+. ..||-|...+
T Consensus 28 EcTFCadCae~~l~------------g~CPnCGGel 51 (84)
T COG3813 28 ECTFCADCAENRLH------------GLCPNCGGEL 51 (84)
T ss_pred eeehhHhHHHHhhc------------CcCCCCCchh
Confidence 35899999988765 6899998764
No 137
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=39.06 E-value=4.2 Score=28.00 Aligned_cols=16 Identities=44% Similarity=1.229 Sum_probs=13.5
Q ss_pred CCCCcccHHHHHHHHH
Q 045854 36 KCFHKFCYNCIVHWTK 51 (272)
Q Consensus 36 ~CgH~FC~~Ci~~w~~ 51 (272)
.|++.||+.|...|..
T Consensus 45 ~C~~~fC~~C~~~~H~ 60 (64)
T smart00647 45 KCGFSFCFRCKVPWHS 60 (64)
T ss_pred CCCCeECCCCCCcCCC
Confidence 6899999999888843
No 138
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=38.55 E-value=27 Score=33.07 Aligned_cols=46 Identities=24% Similarity=0.629 Sum_probs=33.6
Q ss_pred CCcccccccCCC---CceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 18 PNPCPICLGPVV---EDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 18 ~~~CpICl~~~~---~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
...||||-+... ....--+|++..|..|+..-.. +...||.|+++.
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~----------~~~~~~~~rk~~ 297 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD----------GDGRCPGCRKPY 297 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccc----------cCCCCCccCCcc
Confidence 467999998662 2222337899989999887665 478999999653
No 139
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=37.49 E-value=45 Score=36.50 Aligned_cols=50 Identities=26% Similarity=0.533 Sum_probs=33.8
Q ss_pred CCCcccccccCCCC-----c-eeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 045854 17 NPNPCPICLGPVVE-----D-SYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVS 75 (272)
Q Consensus 17 ~~~~CpICl~~~~~-----p-~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~ 75 (272)
....|-||-+.+.- + +.-..|+---|..|. ++-. +.++..||-|++.+..
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCY-EYEr--------~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCY-EYER--------KDGNQSCPQCKTKYKR 71 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchh-hhhh--------hcCCccCCccCCchhh
Confidence 34589999987532 1 222357767899998 4422 2367899999998763
No 140
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.28 E-value=38 Score=31.10 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=34.2
Q ss_pred CCCCcccccccCCCC---ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 16 ENPNPCPICLGPVVE---DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 16 ~~~~~CpICl~~~~~---p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
.....|||---.+.. -..+..|||+|-..-+.+.- ...|++|.+.+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik------------as~C~~C~a~y 157 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK------------ASVCHVCGAAY 157 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh------------hccccccCCcc
Confidence 346789987766654 24566999999998887753 36899999875
No 141
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=36.53 E-value=18 Score=34.01 Aligned_cols=46 Identities=28% Similarity=0.565 Sum_probs=32.0
Q ss_pred CCCCcccccccCCCCcee-e-cCCCC--cccHHHHHHHHHHhhhcccCCCCCCCCCCCCc
Q 045854 16 ENPNPCPICLGPVVEDSY-L-DKCFH--KFCYNCIVHWTKVVASKHSSLLSSVKCPLCKT 71 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~-l-~~CgH--~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~ 71 (272)
+....||+|-......+. . ..=|+ .+|.-|-.+|-.. ..+||.|..
T Consensus 185 ~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~----------R~~C~~Cg~ 234 (309)
T PRK03564 185 EQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV----------RVKCSNCEQ 234 (309)
T ss_pred cCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc----------CccCCCCCC
Confidence 356789999987654322 1 12233 5699999999763 679999975
No 142
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.36 E-value=25 Score=29.83 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=20.1
Q ss_pred CCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccce
Q 045854 38 FHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSI 76 (272)
Q Consensus 38 gH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~ 76 (272)
.+.||..|-.+-+. .||.|.+++..-
T Consensus 27 ~~~fC~kCG~~tI~-------------~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 27 REKFCSKCGAKTIT-------------SCPNCSTPIRGD 52 (158)
T ss_pred HHHHHHHhhHHHHH-------------HCcCCCCCCCCc
Confidence 34799999988765 799999876444
No 144
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=35.80 E-value=23 Score=24.44 Aligned_cols=26 Identities=35% Similarity=0.874 Sum_probs=13.5
Q ss_pred cCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCC
Q 045854 35 DKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCK 70 (272)
Q Consensus 35 ~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr 70 (272)
..|++.||..|=.=.-. ..-.||-|.
T Consensus 25 ~~C~~~FC~dCD~fiHE----------~LH~CPGC~ 50 (51)
T PF07975_consen 25 PKCKNHFCIDCDVFIHE----------TLHNCPGCE 50 (51)
T ss_dssp TTTT--B-HHHHHTTTT----------TS-SSSTT-
T ss_pred CCCCCccccCcChhhhc----------cccCCcCCC
Confidence 37999999999532222 245788874
No 145
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=35.47 E-value=16 Score=34.35 Aligned_cols=47 Identities=30% Similarity=0.596 Sum_probs=32.1
Q ss_pred CCCCcccccccCCCCceeec---CCC--CcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 16 ENPNPCPICLGPVVEDSYLD---KCF--HKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~---~Cg--H~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
.....||+|-......+... .=| +.+|.-|-.+|-.. ..+||.|...
T Consensus 182 ~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~----------R~~C~~Cg~~ 233 (305)
T TIGR01562 182 ESRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV----------RVKCSHCEES 233 (305)
T ss_pred CCCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc----------CccCCCCCCC
Confidence 34568999998775432211 233 35799999999763 6799999763
No 146
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=34.98 E-value=7.3 Score=35.89 Aligned_cols=47 Identities=28% Similarity=0.560 Sum_probs=22.7
Q ss_pred CCCCcccccccCCCCceeecC----CCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 16 ENPNPCPICLGPVVEDSYLDK----CFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~----CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
.....||||-....-...... -.+.+|.-|-.+|-.. ...||.|...
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~----------R~~Cp~Cg~~ 220 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV----------RIKCPYCGNT 220 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE------------TTS-TTT---
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec----------CCCCcCCCCC
Confidence 445789999987654433322 2346799999999652 5799999765
No 147
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=34.59 E-value=29 Score=23.35 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=22.5
Q ss_pred CcccccccCCCCc---eeecCCCCcccHHHHHHHHH
Q 045854 19 NPCPICLGPVVED---SYLDKCFHKFCYNCIVHWTK 51 (272)
Q Consensus 19 ~~CpICl~~~~~p---~~l~~CgH~FC~~Ci~~w~~ 51 (272)
..|.+|...|..- ..-..||+.||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 4688888766532 22237999999999876543
No 148
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=34.09 E-value=24 Score=25.05 Aligned_cols=17 Identities=41% Similarity=0.696 Sum_probs=12.4
Q ss_pred cCCCCCCCCCCCCcccc
Q 045854 58 SSLLSSVKCPLCKTENV 74 (272)
Q Consensus 58 ~~~~~~~~CPlCr~~~~ 74 (272)
......+.||+|+.+..
T Consensus 34 Fs~~~~p~CPlC~s~M~ 50 (59)
T PF14169_consen 34 FSFEEEPVCPLCKSPMV 50 (59)
T ss_pred cccCCCccCCCcCCccc
Confidence 34456789999998754
No 149
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.77 E-value=23 Score=27.47 Aligned_cols=15 Identities=40% Similarity=1.099 Sum_probs=12.8
Q ss_pred cccHHHHHHHHHHhh
Q 045854 40 KFCYNCIVHWTKVVA 54 (272)
Q Consensus 40 ~FC~~Ci~~w~~~~~ 54 (272)
.||..|+..|....+
T Consensus 42 gFCRNCLs~Wy~eaa 56 (104)
T COG3492 42 GFCRNCLSNWYREAA 56 (104)
T ss_pred HHHHHHHHHHHHHHH
Confidence 599999999998654
No 150
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=33.75 E-value=25 Score=37.05 Aligned_cols=33 Identities=24% Similarity=0.613 Sum_probs=22.1
Q ss_pred cccccccCCCCc-eeecCCCCcccHHHHHHHHHH
Q 045854 20 PCPICLGPVVED-SYLDKCFHKFCYNCIVHWTKV 52 (272)
Q Consensus 20 ~CpICl~~~~~p-~~l~~CgH~FC~~Ci~~w~~~ 52 (272)
.|.||.-....- .+-..|+|+.+..|..+|+..
T Consensus 1030 ~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~ 1063 (1081)
T KOG0309|consen 1030 QCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRT 1063 (1081)
T ss_pred eeeeEeeEeeccchhhccccccccHHHHHHHHhc
Confidence 455554433321 122379999999999999985
No 151
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=33.63 E-value=1.2e+02 Score=19.96 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=16.4
Q ss_pred CCchHHHHHHHHhhcccccc
Q 045854 185 ETKEEDFKALVSDAARPFLM 204 (272)
Q Consensus 185 ~~~~~ef~~~~~~~~~~fl~ 204 (272)
.+...||..+|...+..||.
T Consensus 24 ~Lsk~Elk~Ll~~Elp~flk 43 (44)
T PF01023_consen 24 TLSKKELKELLEKELPNFLK 43 (44)
T ss_dssp SEEHHHHHHHHHHHSTTTHH
T ss_pred eEcHHHHHHHHHHHHHHHhc
Confidence 36789999999888888874
No 152
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=33.44 E-value=27 Score=31.42 Aligned_cols=22 Identities=32% Similarity=0.798 Sum_probs=18.0
Q ss_pred ccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 41 FCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 41 FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
-|.+|-.....+ -+.||+|++.
T Consensus 196 ~C~sC~qqIHRN----------APiCPlCK~K 217 (230)
T PF10146_consen 196 TCQSCHQQIHRN----------APICPLCKAK 217 (230)
T ss_pred hhHhHHHHHhcC----------CCCCcccccc
Confidence 489999887763 6899999975
No 153
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.77 E-value=50 Score=26.48 Aligned_cols=42 Identities=29% Similarity=0.566 Sum_probs=29.2
Q ss_pred CcccccccCCCCce-------------eecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCC
Q 045854 19 NPCPICLGPVVEDS-------------YLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCK 70 (272)
Q Consensus 19 ~~CpICl~~~~~p~-------------~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr 70 (272)
..|--|+..|..+. .-..|.+.||.+|=.=+... ...||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~----------Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHES----------LHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhh----------ccCCcCCC
Confidence 45999998876531 13478889999886655542 45788885
No 154
>PF09888 DUF2115: Uncharacterized protein conserved in archaea (DUF2115); InterPro: IPR019215 This entry represents various hypothetical archaeal proteins, has no known function.
Probab=32.69 E-value=98 Score=26.33 Aligned_cols=86 Identities=15% Similarity=0.166 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHhHhhccc---chHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhccccccchhhhHHHHH
Q 045854 138 QWLQSWLRREIQAVMQEE---DVEIVVHHILGVVDSFLKRNKQRCQMGTPETKEEDFKALVSDAARPFLMARTDRFVNEM 214 (272)
Q Consensus 138 ~Rl~~Wl~REL~~l~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~~~~fl~~~t~~F~HEl 214 (272)
..+..+|++|++.|-... =+..++.++++.+..+.....++..+...+++.++|...+ +++...-......=-+-+
T Consensus 23 ~~i~~~l~~~~~~lp~~Yr~~~~~~~~~~~~~~~~eIk~~~~~~~~~~~~~~d~~~~~~~~-~~i~~~~~~~~~~~~~~~ 101 (163)
T PF09888_consen 23 MKIRGFLEKDIKYLPPEYREKYIESFFEYFFGTYHEIKNMYRSGSFIEDFEIDEEEFKEFL-NMIEDGCSYSDEESEFRK 101 (163)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccCCHHHHHHHH-HHHHHhhccCCcchhHHH
Confidence 457789999998875422 2566777888888877653333333333345666666654 333222212111111555
Q ss_pred HHHHhCCCCh
Q 045854 215 QLFLASALNI 224 (272)
Q Consensus 215 ~~Fa~Sp~~~ 224 (272)
+.++-|+|.|
T Consensus 102 l~~lis~Y~~ 111 (163)
T PF09888_consen 102 LYYLISPYLI 111 (163)
T ss_pred HHHHHHHHHH
Confidence 5566666543
No 155
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=32.56 E-value=15 Score=35.71 Aligned_cols=38 Identities=21% Similarity=0.428 Sum_probs=0.0
Q ss_pred CCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 36 KCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 36 ~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
||||.---....-|.+..- -|...+=...||.|-.++.
T Consensus 364 PCGHv~SekTa~yWs~i~l-PhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 364 PCGHVCSEKTAKYWSQIPL-PHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp ---------------------------------------
T ss_pred ccccccchhhhhhhhcCCC-CCCcccccccCCcccCccc
Confidence 8999766677777866421 1223333478999988754
No 156
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=32.43 E-value=86 Score=32.44 Aligned_cols=63 Identities=22% Similarity=0.429 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHhHhhcccchHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhccccccchhhhHHHHHHH
Q 045854 137 NQWLQSWLRREIQAVMQEEDVEIVVHHILGVVDSFLKRNKQRCQMGTPETKEEDFKALVSDAARPFLMARTDRFVNEMQL 216 (272)
Q Consensus 137 ~~Rl~~Wl~REL~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~~~~fl~~~t~~F~HEl~~ 216 (272)
+.|++||+..-+.-+||.++.++| .+|++.|+.- .+| | + |.+.|+--|-+-|+.||-=++.
T Consensus 594 ~~rirpwV~KKIiEflGeeE~tLV-dFI~s~i~~h----------~~~---q-~----iL~dl~~ilDEdAE~FV~KmWR 654 (668)
T KOG2253|consen 594 NERIRPWVNKKIIEFLGEEEDTLV-DFICSNIRQH----------SSP---Q-Q----ILDDLAMILDEDAEVFVVKMWR 654 (668)
T ss_pred HHHHHHHHHHHHHHHhCCcchhHH-HHHHHHHHhc----------CCH---H-H----HHHHHHHHHhcchHHHHHHHHH
Confidence 368999999999999998775543 5665554431 111 1 1 4455677778889999887776
Q ss_pred HH
Q 045854 217 FL 218 (272)
Q Consensus 217 Fa 218 (272)
.|
T Consensus 655 lL 656 (668)
T KOG2253|consen 655 LL 656 (668)
T ss_pred HH
Confidence 55
No 157
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=30.33 E-value=17 Score=35.31 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=0.0
Q ss_pred ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 31 DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 31 p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
|-+-..|||++-. ..|-... ........||+|++.
T Consensus 303 P~VYl~CGHVhG~---h~Wg~~~----~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 303 PWVYLNCGHVHGY---HNWGQDS----DRDPRSRTCPLCRQV 337 (416)
T ss_dssp ------------------------------------------
T ss_pred ceeeccccceeee---ccccccc----ccccccccCCCcccc
Confidence 3333489997654 4575421 111246899999975
No 158
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.88 E-value=58 Score=33.86 Aligned_cols=51 Identities=25% Similarity=0.525 Sum_probs=35.8
Q ss_pred cccccccCCCCceeecCCCC-cccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 045854 20 PCPICLGPVVEDSYLDKCFH-KFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVS 75 (272)
Q Consensus 20 ~CpICl~~~~~p~~l~~CgH-~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~ 75 (272)
.|+||-..+.-... ..||| .-|..|..+...... .......||.|+..+..
T Consensus 2 ~c~ic~~s~~~~~~-~s~~h~~v~~~~~~R~~~~~~----~~~~~~~~~vcr~~~~~ 53 (669)
T KOG2231|consen 2 SCAICAFSPDFVGR-GSCGHNEVCATCVVRLRFELN----NRKCSNECPVCRREVET 53 (669)
T ss_pred CcceeecCcccccc-ccccccccchhhhhhhhhhcc----cccccccCcccccceee
Confidence 59999998877644 47999 899999988654211 11134678999986543
No 159
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=29.65 E-value=12 Score=26.60 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=15.1
Q ss_pred CCCcccccccCCCCc---eeecCCCCcccHHHHHH
Q 045854 17 NPNPCPICLGPVVED---SYLDKCFHKFCYNCIVH 48 (272)
Q Consensus 17 ~~~~CpICl~~~~~p---~~l~~CgH~FC~~Ci~~ 48 (272)
+...|.+|...|.-- -.-..||+.||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-E
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCC
Confidence 346799999988431 11126899999888754
No 160
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.61 E-value=8.7 Score=35.19 Aligned_cols=45 Identities=27% Similarity=0.511 Sum_probs=33.3
Q ss_pred CcccccccCCC-C-----ceeecC-------CCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 19 NPCPICLGPVV-E-----DSYLDK-------CFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 19 ~~CpICl~~~~-~-----p~~l~~-------CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
..|.||...+. + |.++.. |||..|..|+..-+.. ....||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~---------~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQ---------AGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHH---------hhhcCCcccce
Confidence 45889987775 2 433323 9999999999998774 23789999864
No 161
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.40 E-value=32 Score=28.32 Aligned_cols=23 Identities=26% Similarity=0.704 Sum_probs=17.4
Q ss_pred cccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 045854 40 KFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVS 75 (272)
Q Consensus 40 ~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~ 75 (272)
.||..|-..-+ ..||+|.+++..
T Consensus 29 afcskcgeati-------------~qcp~csasirg 51 (160)
T COG4306 29 AFCSKCGEATI-------------TQCPICSASIRG 51 (160)
T ss_pred HHHhhhchHHH-------------hcCCccCCcccc
Confidence 68999976654 479999987543
No 162
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=28.86 E-value=34 Score=32.39 Aligned_cols=47 Identities=4% Similarity=-0.128 Sum_probs=33.7
Q ss_pred CCCcccccccCCCCceeecCCCC-cccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccce
Q 045854 17 NPNPCPICLGPVVEDSYLDKCFH-KFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSI 76 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~~CgH-~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~ 76 (272)
....|-.|-..+... .+.+|+| .||..|..- . ....||.|.......
T Consensus 342 s~~~~~~~~~~~~st-~~~~~~~n~~~~~~a~~--s----------~~~~~~~c~~~~~~~ 389 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLST-IWSGGNMNLSPGSLASA--S----------ASPTSSTCDHNDHTL 389 (394)
T ss_pred hhcccccccCceeee-EeecCCcccChhhhhhc--c----------cCCccccccccceee
Confidence 356788888766654 4558999 799999862 1 368999998765433
No 163
>PLN02400 cellulose synthase
Probab=28.73 E-value=64 Score=35.37 Aligned_cols=50 Identities=24% Similarity=0.440 Sum_probs=33.6
Q ss_pred CCcccccccCCCC-----c-eeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccce
Q 045854 18 PNPCPICLGPVVE-----D-SYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSI 76 (272)
Q Consensus 18 ~~~CpICl~~~~~-----p-~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~ 76 (272)
...|-||-+.+-. + +.-..|+---|..|. ++ +++.++..||-||+.+...
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCY-EY--------ERkeGnq~CPQCkTrYkR~ 91 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCY-EY--------ERKDGTQCCPQCKTRYRRH 91 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchh-he--------ecccCCccCcccCCccccc
Confidence 4589999987632 1 122356667899998 43 2334678999999987633
No 164
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=28.18 E-value=37 Score=35.48 Aligned_cols=56 Identities=18% Similarity=0.481 Sum_probs=35.8
Q ss_pred CCCCCcccccccCCCCc---------eeecCCCCcc--------------------cHHHHHHHHHHhhhcccC-CCCCC
Q 045854 15 SENPNPCPICLGPVVED---------SYLDKCFHKF--------------------CYNCIVHWTKVVASKHSS-LLSSV 64 (272)
Q Consensus 15 ~~~~~~CpICl~~~~~p---------~~l~~CgH~F--------------------C~~Ci~~w~~~~~~k~~~-~~~~~ 64 (272)
..+-..|+-|+..+.+| +.-+.||..| |..|..++-.-.. .+ .-+..
T Consensus 98 ~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~n---RRfHAQp~ 174 (750)
T COG0068 98 PPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLN---RRFHAQPI 174 (750)
T ss_pred CCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccc---cccccccc
Confidence 45567899999988765 1224677776 9999988743100 00 01346
Q ss_pred CCCCCCccc
Q 045854 65 KCPLCKTEN 73 (272)
Q Consensus 65 ~CPlCr~~~ 73 (272)
.||.|.-.+
T Consensus 175 aCp~CGP~~ 183 (750)
T COG0068 175 ACPKCGPHL 183 (750)
T ss_pred cCcccCCCe
Confidence 899997543
No 165
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=27.53 E-value=37 Score=30.69 Aligned_cols=23 Identities=35% Similarity=0.912 Sum_probs=18.2
Q ss_pred cccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 40 KFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 40 ~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
.-|.+|-.+... .-+.||+|+..
T Consensus 250 K~ClsChqqIHR----------NAPiCPlCKaK 272 (286)
T KOG4451|consen 250 KVCLSCHQQIHR----------NAPICPLCKAK 272 (286)
T ss_pred hHHHHHHHHHhc----------CCCCCcchhhc
Confidence 358999888766 36899999975
No 166
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=26.98 E-value=23 Score=24.08 Aligned_cols=10 Identities=40% Similarity=0.803 Sum_probs=5.3
Q ss_pred CCCCCCcccc
Q 045854 65 KCPLCKTENV 74 (272)
Q Consensus 65 ~CPlCr~~~~ 74 (272)
.||+|..+++
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 8999998764
No 167
>PLN02189 cellulose synthase
Probab=26.63 E-value=67 Score=35.07 Aligned_cols=49 Identities=24% Similarity=0.585 Sum_probs=33.0
Q ss_pred CCcccccccCCCC----cee--ecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 045854 18 PNPCPICLGPVVE----DSY--LDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVS 75 (272)
Q Consensus 18 ~~~CpICl~~~~~----p~~--l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~ 75 (272)
...|.||-+.+.. ..+ -..|+--.|..|. ++-. +.++..||-|++.+..
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cy-eyer--------~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCY-EYER--------REGTQNCPQCKTRYKR 88 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchh-hhhh--------hcCCccCcccCCchhh
Confidence 4489999997642 112 2247667899998 4322 2357899999998763
No 168
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=26.32 E-value=23 Score=22.41 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=9.0
Q ss_pred CCCCCCCCCCccc
Q 045854 61 LSSVKCPLCKTEN 73 (272)
Q Consensus 61 ~~~~~CPlCr~~~ 73 (272)
+...+||.|+..+
T Consensus 23 ~~~vrC~~C~~~f 35 (37)
T PF13719_consen 23 GRKVRCPKCGHVF 35 (37)
T ss_pred CcEEECCCCCcEe
Confidence 3467888887754
No 169
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=25.54 E-value=48 Score=30.13 Aligned_cols=48 Identities=21% Similarity=0.518 Sum_probs=33.7
Q ss_pred CCcccccccCCCCc---eeecCCCC-----cccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 18 PNPCPICLGPVVED---SYLDKCFH-----KFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 18 ~~~CpICl~~~~~p---~~l~~CgH-----~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
...|-||....... ....||.. ..+..|+..|... .+...|.+|...+
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~--------~~~~~CeiC~~~~ 133 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSI--------KGNITCEICKSFF 133 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhcc--------ccCeeeecccccc
Confidence 46799999866432 24456755 2478999999873 2467999998754
No 170
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=24.48 E-value=7.9 Score=26.54 Aligned_cols=31 Identities=29% Similarity=0.705 Sum_probs=15.6
Q ss_pred Ccccc--cccCCCCc-------eeecCCCCcccHHHHHHH
Q 045854 19 NPCPI--CLGPVVED-------SYLDKCFHKFCYNCIVHW 49 (272)
Q Consensus 19 ~~CpI--Cl~~~~~p-------~~l~~CgH~FC~~Ci~~w 49 (272)
..||- |...+... +.=..|++.||+.|-..|
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 36766 76655331 222238888998887666
No 171
>PLN02436 cellulose synthase A
Probab=23.63 E-value=1e+02 Score=33.86 Aligned_cols=48 Identities=23% Similarity=0.635 Sum_probs=32.5
Q ss_pred CCcccccccCCCC----cee--ecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 18 PNPCPICLGPVVE----DSY--LDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 18 ~~~CpICl~~~~~----p~~--l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
...|.||-+.+-. ..+ -..|+--.|..|. ++-. +.++..||-|++...
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cy-eyer--------~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCY-EYER--------REGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchh-hhhh--------hcCCccCcccCCchh
Confidence 4489999987632 112 2256667899998 4322 235789999999876
No 172
>PLN02195 cellulose synthase A
Probab=23.50 E-value=78 Score=34.36 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=32.3
Q ss_pred CcccccccCCCC-----c-eeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 19 NPCPICLGPVVE-----D-SYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 19 ~~CpICl~~~~~-----p-~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
..|.||-+.+.. + +.-..|+---|..|. ++-. +.++..||-|++...
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eyer--------~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYEI--------KEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchh-hhhh--------hcCCccCCccCCccc
Confidence 479999985532 2 223367777899998 4422 336789999999865
No 173
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=21.72 E-value=1.1e+02 Score=23.08 Aligned_cols=48 Identities=27% Similarity=0.534 Sum_probs=18.8
Q ss_pred CCcccccccCCCC----ceee--cCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 18 PNPCPICLGPVVE----DSYL--DKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 18 ~~~CpICl~~~~~----p~~l--~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
.-.|-||-+..-- .++. ..|+--.|..|..-=.+. ....||-|++.+.
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErke---------g~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKE---------GNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHT---------S-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhc---------CcccccccCCCcc
Confidence 4579999876532 1122 256667799998654442 5678999998754
No 174
>PF09795 Atg31: Autophagy-related protein 31; InterPro: IPR018621 Autophagy is an intracellular degradation system that responds to nutrient starvation. Cis1/Atg31 has been shown to be required for autophagosome formation in Saccharomyces cerevisiae (Baker's yeast) []. It interacts with Atg17 [].
Probab=21.40 E-value=46 Score=28.30 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=25.4
Q ss_pred CCChHHHHHHhhhccCCCC----CCccccCCCCCCCCCCcccceEEeecCCCC
Q 045854 221 ALNIEAYDAVYMQRLGWNT----PRVTMESGEGETSGQTPVIPYLHIFDEDSD 269 (272)
Q Consensus 221 p~~~~~yD~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (272)
|+++..||++|.+.+.-.. -+.+.+ +...-.--+--=|||+||-|
T Consensus 3 ~~titV~DkNv~h~l~~~~~~~~~~~s~~----~~~~amFpTNIkYIFEDDdd 51 (160)
T PF09795_consen 3 PLTITVYDKNVAHSLSNENSLNNESSSPD----GNQNAMFPTNIKYIFEDDDD 51 (160)
T ss_pred CcEEEEEecchHhhhccccccccccCCCC----CccceecccceEEEecCCcc
Confidence 4678889999998764322 211111 11112233445689998877
No 175
>PRK01343 zinc-binding protein; Provisional
Probab=21.23 E-value=68 Score=22.65 Aligned_cols=13 Identities=23% Similarity=0.680 Sum_probs=10.2
Q ss_pred CCCCCCCCCcccc
Q 045854 62 SSVKCPLCKTENV 74 (272)
Q Consensus 62 ~~~~CPlCr~~~~ 74 (272)
....||+|++++.
T Consensus 8 p~~~CP~C~k~~~ 20 (57)
T PRK01343 8 PTRPCPECGKPST 20 (57)
T ss_pred CCCcCCCCCCcCc
Confidence 4678999998753
No 176
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.16 E-value=33 Score=33.63 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=14.0
Q ss_pred eecCCCCcccHHHHHHHH
Q 045854 33 YLDKCFHKFCYNCIVHWT 50 (272)
Q Consensus 33 ~l~~CgH~FC~~Ci~~w~ 50 (272)
+.-.|||.||+.|...|.
T Consensus 180 v~C~~g~~FC~~C~~~~H 197 (444)
T KOG1815|consen 180 VDCGCGHEFCFACGEESH 197 (444)
T ss_pred eeCCCCchhHhhcccccc
Confidence 344799999999986654
No 177
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.85 E-value=48 Score=27.39 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=14.1
Q ss_pred ccccCCCCceeecCCCCcccHH
Q 045854 23 ICLGPVVEDSYLDKCFHKFCYN 44 (272)
Q Consensus 23 ICl~~~~~p~~l~~CgH~FC~~ 44 (272)
||...-...+.- .|||.||..
T Consensus 62 i~qs~~~rv~rc-ecghsf~d~ 82 (165)
T COG4647 62 ICQSAQKRVIRC-ECGHSFGDY 82 (165)
T ss_pred EEecccccEEEE-eccccccCh
Confidence 677665553333 799999963
No 178
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=20.35 E-value=45 Score=30.30 Aligned_cols=34 Identities=32% Similarity=0.412 Sum_probs=30.7
Q ss_pred CCcccccccCCCCceeecCCCCcccHHHHHHHHH
Q 045854 18 PNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTK 51 (272)
Q Consensus 18 ~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~ 51 (272)
..+|||-+.+...|.....|.|.|=..-|...++
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq 222 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQ 222 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhc
Confidence 5689999999999988889999999999988877
Done!