Query 045854
Match_columns 272
No_of_seqs 277 out of 1171
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 10:31:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2djb_A Polycomb group ring fin 99.3 1.9E-12 6.4E-17 93.7 6.1 51 14-74 11-61 (72)
2 1chc_A Equine herpes virus-1 r 99.3 1.8E-12 6E-17 92.5 5.8 58 16-83 3-60 (68)
3 2csy_A Zinc finger protein 183 99.3 6.4E-12 2.2E-16 92.9 6.6 50 14-74 11-60 (81)
4 3ng2_A RNF4, snurf, ring finge 99.3 2.1E-12 7.2E-17 92.6 3.1 53 12-74 4-62 (71)
5 2d8t_A Dactylidin, ring finger 99.3 3.5E-12 1.2E-16 92.1 4.2 51 13-74 10-60 (71)
6 2ea6_A Ring finger protein 4; 99.2 5.6E-12 1.9E-16 89.7 4.5 52 13-74 10-67 (69)
7 2kiz_A E3 ubiquitin-protein li 99.2 1.9E-11 6.4E-16 87.4 6.8 55 13-77 9-65 (69)
8 3ztg_A E3 ubiquitin-protein li 99.2 9.4E-12 3.2E-16 93.9 5.4 53 12-73 7-60 (92)
9 1t1h_A Gspef-atpub14, armadill 99.2 9E-12 3.1E-16 91.2 4.6 52 13-74 3-54 (78)
10 2yur_A Retinoblastoma-binding 99.2 1.6E-11 5.5E-16 89.4 5.4 51 14-73 11-62 (74)
11 2ecy_A TNF receptor-associated 99.2 1.7E-11 5.8E-16 87.1 5.0 51 14-74 11-61 (66)
12 2ysl_A Tripartite motif-contai 99.2 2.7E-11 9.2E-16 87.3 5.8 53 14-74 16-68 (73)
13 2ep4_A Ring finger protein 24; 99.2 4.1E-11 1.4E-15 86.8 6.4 53 14-76 11-65 (74)
14 3lrq_A E3 ubiquitin-protein li 99.2 1.8E-11 6.2E-16 94.4 4.7 48 17-73 21-68 (100)
15 2ect_A Ring finger protein 126 99.2 2.1E-11 7.2E-16 89.2 4.6 52 13-74 10-63 (78)
16 4ayc_A E3 ubiquitin-protein li 99.2 1.4E-11 4.9E-16 100.2 3.9 49 18-77 53-101 (138)
17 2ysj_A Tripartite motif-contai 99.2 6.8E-11 2.3E-15 83.1 6.7 48 14-69 16-63 (63)
18 2ckl_A Polycomb group ring fin 99.1 2.1E-11 7.2E-16 94.9 3.7 49 16-74 13-61 (108)
19 2ecw_A Tripartite motif-contai 99.1 6.9E-11 2.4E-15 87.1 6.2 56 14-74 15-70 (85)
20 2ecm_A Ring finger and CHY zin 99.1 5.2E-11 1.8E-15 81.1 5.1 48 17-74 4-54 (55)
21 2egp_A Tripartite motif-contai 99.1 1.4E-11 4.7E-16 90.1 2.1 58 13-74 7-64 (79)
22 1iym_A EL5; ring-H2 finger, ub 99.1 2.8E-11 9.5E-16 82.6 3.5 49 16-74 3-54 (55)
23 2ct2_A Tripartite motif protei 99.1 8E-11 2.7E-15 87.6 6.1 54 13-74 10-67 (88)
24 2y43_A E3 ubiquitin-protein li 99.1 3.9E-11 1.3E-15 91.9 4.1 48 17-74 21-68 (99)
25 1g25_A CDK-activating kinase a 99.1 4.1E-11 1.4E-15 84.8 3.7 49 17-74 2-54 (65)
26 2xeu_A Ring finger protein 4; 99.1 2.7E-11 9.2E-16 84.8 2.6 48 17-74 2-55 (64)
27 3fl2_A E3 ubiquitin-protein li 99.1 4.9E-11 1.7E-15 95.1 4.5 49 17-75 51-99 (124)
28 2ecv_A Tripartite motif-contai 99.1 1.1E-10 3.8E-15 85.9 5.9 56 14-74 15-70 (85)
29 3hct_A TNF receptor-associated 99.1 6E-11 2E-15 93.9 4.5 52 13-74 13-64 (118)
30 2l0b_A E3 ubiquitin-protein li 99.1 5.8E-11 2E-15 90.0 4.1 51 15-75 37-89 (91)
31 1x4j_A Ring finger protein 38; 99.1 6.4E-11 2.2E-15 86.2 3.7 50 15-74 20-71 (75)
32 2ecj_A Tripartite motif-contai 99.1 1.5E-10 5E-15 79.6 4.8 48 14-69 11-58 (58)
33 2ckl_B Ubiquitin ligase protei 99.0 1.1E-10 3.8E-15 97.4 4.6 49 17-74 53-101 (165)
34 3l11_A E3 ubiquitin-protein li 99.0 2E-11 7E-16 96.0 -0.2 52 14-75 11-62 (115)
35 2ecn_A Ring finger protein 141 99.0 5.9E-11 2E-15 85.0 2.1 51 13-75 10-60 (70)
36 2kr4_A Ubiquitin conjugation f 99.0 2.4E-10 8.2E-15 85.8 5.4 50 14-74 10-59 (85)
37 1e4u_A Transcriptional repress 99.0 2.7E-10 9.2E-15 84.4 5.4 53 13-74 6-61 (78)
38 1v87_A Deltex protein 2; ring- 99.0 3.3E-10 1.1E-14 88.6 6.1 55 17-76 24-95 (114)
39 2ecl_A Ring-box protein 2; RNF 99.0 2.3E-10 7.8E-15 84.9 4.4 50 16-75 13-76 (81)
40 1z6u_A NP95-like ring finger p 99.0 2E-10 6.9E-15 95.0 4.4 49 17-75 77-125 (150)
41 2kre_A Ubiquitin conjugation f 99.0 3.6E-10 1.2E-14 87.5 5.3 50 14-74 25-74 (100)
42 1jm7_A BRCA1, breast cancer ty 99.0 4.1E-10 1.4E-14 87.5 5.0 50 17-74 20-69 (112)
43 1wgm_A Ubiquitin conjugation f 99.0 6.4E-10 2.2E-14 85.8 5.8 48 16-74 20-68 (98)
44 1bor_A Transcription factor PM 99.0 1.4E-10 4.7E-15 80.2 1.5 47 15-75 3-49 (56)
45 2yu4_A E3 SUMO-protein ligase 98.9 8.3E-10 2.8E-14 84.2 5.3 55 14-72 3-59 (94)
46 1rmd_A RAG1; V(D)J recombinati 98.9 6.4E-10 2.2E-14 87.5 4.7 48 17-74 22-69 (116)
47 2vje_A E3 ubiquitin-protein li 98.9 4.9E-10 1.7E-14 79.6 3.3 55 15-79 5-61 (64)
48 4ap4_A E3 ubiquitin ligase RNF 98.9 3.7E-10 1.2E-14 89.7 2.6 49 16-74 5-59 (133)
49 3knv_A TNF receptor-associated 98.9 1.2E-10 4.2E-15 95.4 -0.5 48 16-73 29-76 (141)
50 2c2l_A CHIP, carboxy terminus 98.9 1.2E-09 4.1E-14 97.1 5.6 51 14-74 204-254 (281)
51 3dpl_R Ring-box protein 1; ubi 98.9 1.2E-09 4.2E-14 85.5 4.9 48 17-74 36-100 (106)
52 1jm7_B BARD1, BRCA1-associated 98.9 2.6E-10 8.8E-15 90.1 1.0 46 16-73 20-65 (117)
53 2vje_B MDM4 protein; proto-onc 98.8 1.2E-09 4.1E-14 77.4 3.0 53 17-79 6-60 (63)
54 3hcs_A TNF receptor-associated 98.8 1.6E-09 5.3E-14 90.8 3.7 53 13-75 13-65 (170)
55 4ic3_A E3 ubiquitin-protein li 98.8 1.8E-09 6E-14 78.7 3.3 48 17-79 23-71 (74)
56 2ea5_A Cell growth regulator w 98.8 1.2E-08 4.2E-13 73.3 6.3 51 16-81 13-64 (68)
57 2y1n_A E3 ubiquitin-protein li 98.8 5.9E-09 2E-13 98.5 5.5 49 18-76 332-380 (389)
58 2f42_A STIP1 homology and U-bo 98.8 5.5E-09 1.9E-13 89.0 4.7 51 14-74 102-152 (179)
59 2ecg_A Baculoviral IAP repeat- 98.7 9.4E-09 3.2E-13 74.9 4.6 46 18-78 25-71 (75)
60 3htk_C E3 SUMO-protein ligase 98.7 7.1E-09 2.4E-13 93.0 4.7 50 15-72 178-229 (267)
61 4a0k_B E3 ubiquitin-protein li 98.7 2.1E-09 7.2E-14 85.6 0.6 48 17-74 47-111 (117)
62 4ap4_A E3 ubiquitin ligase RNF 98.7 5.8E-09 2E-13 82.7 2.8 49 16-74 70-124 (133)
63 2yho_A E3 ubiquitin-protein li 98.6 1.5E-08 5.2E-13 74.9 3.5 50 17-81 17-67 (79)
64 2d8s_A Cellular modulator of i 98.6 7.5E-08 2.6E-12 71.5 5.6 53 13-74 10-69 (80)
65 2ct0_A Non-SMC element 1 homol 98.5 1.5E-07 5.2E-12 68.9 6.1 52 16-75 13-64 (74)
66 1wim_A KIAA0161 protein; ring 98.5 9E-08 3.1E-12 72.5 3.9 54 17-72 4-61 (94)
67 3t6p_A Baculoviral IAP repeat- 98.4 4.9E-08 1.7E-12 91.0 1.7 49 17-80 294-343 (345)
68 2bay_A PRE-mRNA splicing facto 98.4 2.3E-07 7.8E-12 65.3 3.7 46 18-73 3-48 (61)
69 3vk6_A E3 ubiquitin-protein li 98.3 4.8E-07 1.6E-11 69.5 4.0 50 20-78 3-52 (101)
70 1vyx_A ORF K3, K3RING; zinc-bi 97.8 2.2E-05 7.5E-10 54.9 4.9 50 16-74 4-58 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 97.7 1.6E-05 5.3E-10 73.9 4.0 61 15-75 305-373 (381)
72 1x4q_A U4/U6 small nuclear rib 97.2 0.00043 1.5E-08 52.5 5.4 62 138-218 16-77 (92)
73 1mp1_A Ser/Arg-related nuclear 96.6 0.0017 5.7E-08 50.9 4.1 64 138-219 23-87 (111)
74 3nw0_A Non-structural maintena 96.5 0.0018 6.3E-08 57.1 3.9 51 18-76 180-230 (238)
75 2cs3_A Protein C14ORF4, MY039 95.9 0.016 5.5E-07 42.6 5.8 39 14-53 11-53 (93)
76 3v53_A RNA-binding protein 25; 95.3 0.015 5.3E-07 45.9 4.1 62 138-218 45-106 (119)
77 2jun_A Midline-1; B-BOX, TRIM, 95.2 0.01 3.5E-07 44.7 2.8 33 17-49 2-36 (101)
78 4fo9_A E3 SUMO-protein ligase 87.6 0.41 1.4E-05 44.5 4.0 50 18-73 215-264 (360)
79 3i2d_A E3 SUMO-protein ligase 87.3 0.48 1.7E-05 44.2 4.2 50 18-73 249-298 (371)
80 2ko5_A Ring finger protein Z; 87.0 0.43 1.5E-05 36.0 3.0 48 17-77 27-75 (99)
81 3m62_A Ubiquitin conjugation f 81.6 1 3.6E-05 46.8 4.1 49 15-74 888-937 (968)
82 1wfk_A Zinc finger, FYVE domai 73.1 1.8 6.1E-05 31.9 2.2 36 13-48 4-42 (88)
83 2lri_C Autoimmune regulator; Z 73.1 2.8 9.5E-05 29.2 3.1 50 16-72 10-59 (66)
84 2l5u_A Chromodomain-helicase-D 60.6 5.7 0.00019 26.9 2.6 51 14-71 7-57 (61)
85 1wil_A KIAA1045 protein; ring 59.3 7.4 0.00025 28.7 3.1 55 15-71 12-75 (89)
86 1weo_A Cellulose synthase, cat 53.5 18 0.0006 26.9 4.4 50 17-75 15-70 (93)
87 2yql_A PHD finger protein 21A; 52.6 1.2 4E-05 29.8 -2.0 53 12-71 3-55 (56)
88 3mjh_B Early endosome antigen 49.3 1.8 6.1E-05 26.5 -1.4 18 17-34 4-21 (34)
89 3fyb_A Protein of unknown func 48.8 7.2 0.00025 29.5 1.6 15 40-54 41-55 (104)
90 2o35_A Hypothetical protein DU 48.8 7.2 0.00025 29.6 1.6 15 40-54 42-56 (105)
91 1joc_A EEA1, early endosomal a 46.1 6.2 0.00021 30.8 1.0 31 18-48 69-102 (125)
92 2yw8_A RUN and FYVE domain-con 46.0 8.5 0.00029 27.6 1.6 32 17-48 18-52 (82)
93 1wd2_A Ariadne-1 protein homol 45.2 2.3 7.9E-05 29.1 -1.5 34 18-51 6-46 (60)
94 1z2q_A LM5-1; membrane protein 45.2 9 0.00031 27.6 1.7 32 17-48 20-54 (84)
95 1mm2_A MI2-beta; PHD, zinc fin 45.2 5.7 0.0002 26.9 0.5 52 14-72 5-56 (61)
96 3o36_A Transcription intermedi 44.4 4.9 0.00017 33.1 0.1 49 17-72 3-51 (184)
97 2jmo_A Parkin; IBR, E3 ligase, 42.8 1.8 6E-05 31.3 -2.5 14 36-49 55-68 (80)
98 2d8v_A Zinc finger FYVE domain 42.5 16 0.00055 25.5 2.5 35 13-49 3-38 (67)
99 1x4u_A Zinc finger, FYVE domai 42.5 9.7 0.00033 27.4 1.5 30 17-46 13-45 (84)
100 1wep_A PHF8; structural genomi 41.7 32 0.0011 24.2 4.2 54 13-72 7-63 (79)
101 3u5n_A E3 ubiquitin-protein li 41.4 4.2 0.00014 34.3 -0.8 50 16-72 5-54 (207)
102 1vfy_A Phosphatidylinositol-3- 41.4 11 0.00037 26.4 1.5 29 19-47 12-43 (73)
103 1x62_A C-terminal LIM domain p 41.3 28 0.00095 24.0 3.8 42 14-74 11-52 (79)
104 3t7l_A Zinc finger FYVE domain 41.2 14 0.00049 26.9 2.3 32 17-48 19-53 (90)
105 2lv9_A Histone-lysine N-methyl 40.7 7.8 0.00027 28.9 0.7 48 16-71 26-75 (98)
106 1z60_A TFIIH basal transcripti 40.3 16 0.00055 24.9 2.2 41 19-69 16-58 (59)
107 2xqn_T Testin, TESS; metal-bin 39.7 14 0.00047 28.0 2.0 45 18-74 30-74 (126)
108 3mpx_A FYVE, rhogef and PH dom 38.9 6.4 0.00022 36.3 0.0 52 18-72 375-429 (434)
109 1dvp_A HRS, hepatocyte growth 38.0 9.5 0.00033 32.3 1.0 31 17-47 160-193 (220)
110 2k16_A Transcription initiatio 37.5 5.9 0.0002 27.8 -0.4 52 16-73 16-69 (75)
111 2ct7_A Ring finger protein 31; 36.3 7.8 0.00027 28.0 0.1 29 21-49 28-61 (86)
112 2lbm_A Transcriptional regulat 36.1 33 0.0011 27.4 3.8 56 15-71 60-116 (142)
113 1wg2_A Zinc finger (AN1-like) 36.1 40 0.0014 23.3 3.7 28 16-43 13-40 (64)
114 1y02_A CARP2, FYVE-ring finger 35.4 12 0.00042 29.1 1.1 33 17-49 18-53 (120)
115 2pv0_B DNA (cytosine-5)-methyl 35.3 18 0.00061 33.8 2.4 55 17-72 92-148 (386)
116 2ysm_A Myeloid/lymphoid or mix 35.1 11 0.00038 28.3 0.8 37 14-50 3-41 (111)
117 3zyq_A Hepatocyte growth facto 34.3 20 0.00069 30.6 2.4 32 17-48 163-197 (226)
118 1f62_A Transcription factor WS 33.1 19 0.00064 23.1 1.6 46 20-71 2-49 (51)
119 1wfp_A Zinc finger (AN1-like) 32.2 60 0.0021 23.1 4.2 27 17-43 24-50 (74)
120 2jne_A Hypothetical protein YF 31.9 1.3 4.4E-05 33.6 -4.8 43 18-76 32-74 (101)
121 3a1b_A DNA (cytosine-5)-methyl 31.1 27 0.00091 28.6 2.5 54 17-71 78-133 (159)
122 2co8_A NEDD9 interacting prote 30.9 56 0.0019 22.7 4.0 43 15-75 12-54 (82)
123 2cup_A Skeletal muscle LIM-pro 30.2 14 0.00049 26.7 0.7 44 19-74 34-77 (101)
124 2l4z_A DNA endonuclease RBBP8, 30.0 42 0.0014 25.6 3.4 39 18-74 61-99 (123)
125 1x64_A Alpha-actinin-2 associa 29.8 60 0.002 22.8 4.0 42 14-74 21-62 (89)
126 2zet_C Melanophilin; complex, 28.3 23 0.00077 28.7 1.6 46 17-71 67-116 (153)
127 3ql9_A Transcriptional regulat 27.9 39 0.0013 26.5 2.9 56 15-71 54-110 (129)
128 1fp0_A KAP-1 corepressor; PHD 27.3 22 0.00076 26.1 1.3 51 14-71 21-71 (88)
129 1x61_A Thyroid receptor intera 26.6 72 0.0025 21.2 3.8 33 19-51 34-66 (72)
130 2ro1_A Transcription intermedi 25.3 17 0.00059 30.1 0.4 48 18-72 2-49 (189)
131 1zbd_B Rabphilin-3A; G protein 25.2 24 0.00083 27.8 1.2 50 16-71 53-106 (134)
132 2cu8_A Cysteine-rich protein 2 25.2 42 0.0014 22.8 2.4 41 16-74 7-47 (76)
133 2e6r_A Jumonji/ARID domain-con 24.3 8.8 0.0003 28.3 -1.5 52 14-71 12-65 (92)
134 2gmg_A Hypothetical protein PF 23.8 55 0.0019 24.9 2.9 25 33-72 69-93 (105)
135 2fiy_A Protein FDHE homolog; F 23.6 6.8 0.00023 35.4 -2.6 47 16-72 180-231 (309)
136 1wen_A Inhibitor of growth fam 23.5 58 0.002 22.6 2.8 49 15-72 13-65 (71)
137 2d8y_A Eplin protein; LIM doma 23.5 70 0.0024 22.5 3.4 40 17-74 14-53 (91)
138 4g9i_A Hydrogenase maturation 23.2 38 0.0013 34.4 2.5 55 15-72 103-187 (772)
139 2vpb_A Hpygo1, pygopus homolog 23.1 51 0.0018 22.5 2.5 34 14-47 4-41 (65)
140 1wfh_A Zinc finger (AN1-like) 22.3 95 0.0032 21.4 3.7 28 16-43 13-40 (64)
141 1m3v_A FLIN4, fusion of the LI 21.6 35 0.0012 25.7 1.5 47 19-75 33-81 (122)
142 1we9_A PHD finger family prote 21.5 38 0.0013 22.6 1.5 52 15-71 3-57 (64)
143 2dj7_A Actin-binding LIM prote 20.2 75 0.0026 22.0 2.9 41 16-74 13-53 (80)
144 2rgt_A Fusion of LIM/homeobox 20.2 87 0.003 24.8 3.7 44 18-74 33-76 (169)
No 1
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.9e-12 Score=93.75 Aligned_cols=51 Identities=29% Similarity=0.680 Sum_probs=44.3
Q ss_pred CCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
...+...|+||++.+.+|+.+.+|||.||..||..|++. ...||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----------~~~CP~Cr~~~~ 61 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY----------SNRCPKCNIVVH 61 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH----------CSSCTTTCCCCC
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc----------CCcCCCcCcccC
Confidence 344568899999999999887799999999999999984 579999998764
No 2
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.32 E-value=1.8e-12 Score=92.50 Aligned_cols=58 Identities=36% Similarity=0.855 Sum_probs=49.5
Q ss_pred CCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccceeecccCC
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGYDGT 83 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~~~~~~~ 83 (272)
+....|+||++.+.++....+|||.||..|+..|++. ...||+||+++..+++.+.++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----------~~~CP~Cr~~~~~~~~~~~~d 60 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ----------NPTCPLCKVPVESVVHTIESD 60 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH----------SCSTTTTCCCCCCEECCCCSC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC----------cCcCcCCChhhHhhhhccccc
Confidence 3456899999999998777799999999999999984 579999999998887777653
No 3
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=6.4e-12 Score=92.87 Aligned_cols=50 Identities=26% Similarity=0.593 Sum_probs=43.0
Q ss_pred CCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
.......|+||++.+.+|+. ++|||.||..||..|++. ...||+||+++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~----------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVV-TKCRHYFCESCALEHFRA----------TPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHHH----------CSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHHC----------CCcCCCcCcccc
Confidence 34457889999999999966 489999999999999984 579999999865
No 4
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.25 E-value=2.1e-12 Score=92.64 Aligned_cols=53 Identities=26% Similarity=0.585 Sum_probs=42.9
Q ss_pred CCCCCCCCcccccccCCCCce------eecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 12 SCSSENPNPCPICLGPVVEDS------YLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 12 ~~~~~~~~~CpICl~~~~~p~------~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
+...++...|+||++.+.++. .+.+|||.||..||.+|++. ...||+||+++.
T Consensus 4 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----------~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 4 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----------ANTCPTCRKKIN 62 (71)
T ss_dssp --CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH----------CSBCTTTCCBCC
T ss_pred CCCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc----------CCCCCCCCCccC
Confidence 445567889999999988762 55589999999999999984 479999998754
No 5
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.5e-12 Score=92.07 Aligned_cols=51 Identities=33% Similarity=0.690 Sum_probs=43.4
Q ss_pred CCCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 13 CSSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 13 ~~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
....+...|+||++.+.+++.+ +|||.||..||..|+.. ...||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~----------~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHPVSL-PCKHVFCYLCVKGASWL----------GKRCALCRQEIP 60 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSEEEE-TTTEEEEHHHHHHCTTC----------SSBCSSSCCBCC
T ss_pred ccCCCCCCCccCCcccCCCEEc-cCCCHHHHHHHHHHHHC----------CCcCcCcCchhC
Confidence 3445678999999999999776 79999999999999873 579999999764
No 6
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=5.6e-12 Score=89.66 Aligned_cols=52 Identities=27% Similarity=0.593 Sum_probs=42.9
Q ss_pred CCCCCCCcccccccCCCCce------eecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 13 CSSENPNPCPICLGPVVEDS------YLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 13 ~~~~~~~~CpICl~~~~~p~------~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
....+...|+||++.+.++. .+.+|||.||..||..|++. ...||+||+++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----------~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----------ANTCPTCRKKIN 67 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----------CSSCTTTCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----------CCCCCCCCCccC
Confidence 44566789999999987762 45589999999999999984 579999998764
No 7
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.22 E-value=1.9e-11 Score=87.42 Aligned_cols=55 Identities=27% Similarity=0.675 Sum_probs=43.6
Q ss_pred CCCCCCCcccccccCCCC--ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccee
Q 045854 13 CSSENPNPCPICLGPVVE--DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSII 77 (272)
Q Consensus 13 ~~~~~~~~CpICl~~~~~--p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~ 77 (272)
........|+||++.+.. .....+|||.||..||..|++. ...||+||+.+...+
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----------~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----------NKKCPICRVDIEAQL 65 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----------CSBCTTTCSBSCSCC
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----------CCCCcCcCccccCcC
Confidence 345567789999998853 3455689999999999999984 467999999876543
No 8
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.22 E-value=9.4e-12 Score=93.93 Aligned_cols=53 Identities=19% Similarity=0.463 Sum_probs=44.3
Q ss_pred CCCCCCCCcccccccCCCCceeecC-CCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 12 SCSSENPNPCPICLGPVVEDSYLDK-CFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 12 ~~~~~~~~~CpICl~~~~~p~~l~~-CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
.....+...|+||++.+.+|+.+ + |||+||..||..|+... ....||+||.++
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~--------~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLES--------DEHTCPTCHQND 60 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEEC-TTTCCEECHHHHHHHHHHC--------TTCCCTTTCCSS
T ss_pred cccCCcCCCCCCCChhhcCceEC-CCCCCHHHHHHHHHHHHhc--------CCCcCcCCCCcC
Confidence 34556789999999999999776 6 99999999999998731 247999999875
No 9
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.21 E-value=9e-12 Score=91.21 Aligned_cols=52 Identities=15% Similarity=0.278 Sum_probs=44.4
Q ss_pred CCCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 13 CSSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 13 ~~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
....+...|+||++.+.+|+.+ +|||+||..||..|++. +...||+|++++.
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~-~CgH~fc~~Ci~~~~~~---------~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIV-STGQTYERSSIQKWLDA---------GHKTCPKSQETLL 54 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEE-TTTEEEEHHHHHHHHTT---------TCCBCTTTCCBCS
T ss_pred cCCcccCCCCCccccccCCEEc-CCCCeecHHHHHHHHHH---------CcCCCCCCcCCCC
Confidence 3456788999999999999776 79999999999999973 2578999998763
No 10
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.19 E-value=1.6e-11 Score=89.39 Aligned_cols=51 Identities=20% Similarity=0.498 Sum_probs=42.4
Q ss_pred CCCCCCcccccccCCCCceeecC-CCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 14 SSENPNPCPICLGPVVEDSYLDK-CFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~-CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
...+...|+||++.+.+|+.+ + |||.||..||..|++.. ....||+||+++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~--------~~~~CP~Cr~~~ 62 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLES--------DEHTCPTCHQND 62 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEEC-SSSCCEECTTHHHHHHHHS--------SSSCCSSSCCSS
T ss_pred cCCCCCCCcCCChHHhCCeEc-CCCCCHHHHHHHHHHHHhc--------CCCcCCCCCCcC
Confidence 345678999999999999776 6 99999999999999841 236899999863
No 11
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.7e-11 Score=87.07 Aligned_cols=51 Identities=27% Similarity=0.573 Sum_probs=43.0
Q ss_pred CCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
...+...|+||++.+.+|+.+ +|||.||..||..|++. ....||+||+++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~---------~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQT-ECGHRFCESCMAALLSS---------SSPKCTACQESIV 61 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCC-SSSCCCCHHHHHHHHTT---------SSCCCTTTCCCCC
T ss_pred cCCcCCCCCCCChHhcCeeEC-CCCCHHHHHHHHHHHHh---------CcCCCCCCCcCCC
Confidence 345678999999999999775 89999999999999952 3578999998754
No 12
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2.7e-11 Score=87.33 Aligned_cols=53 Identities=34% Similarity=0.715 Sum_probs=43.5
Q ss_pred CCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
...+...|+||++.+.+|+.+ +|||.||..||..|++. .+....||+||+++.
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~-------~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGET-------SCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCSS-------SCSCCCCSSSCCCCC
T ss_pred hCccCCEeccCCcccCCeEEc-CCCChhhHHHHHHHHHc-------CCCCCCCCCCCCcCC
Confidence 345678999999999999777 89999999999999862 113579999998764
No 13
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=4.1e-11 Score=86.78 Aligned_cols=53 Identities=25% Similarity=0.647 Sum_probs=42.6
Q ss_pred CCCCCCcccccccCCCCce--eecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccce
Q 045854 14 SSENPNPCPICLGPVVEDS--YLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSI 76 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~--~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~ 76 (272)
.......|+||++.+..+. ...+|+|.||..||.+|++. ...||+||+++..+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----------~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV----------RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH----------CSBCTTTCCBCSSC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc----------CCcCCCcCcccccc
Confidence 4456789999999997653 33489999999999999984 46899999987554
No 14
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.17 E-value=1.8e-11 Score=94.36 Aligned_cols=48 Identities=23% Similarity=0.690 Sum_probs=42.1
Q ss_pred CCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 17 NPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
+...|+||++.+.+|+.+.+|||.||..||..|++. ....||+||+++
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~---------~~~~CP~Cr~~~ 68 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTE---------QRAQCPHCRAPL 68 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHH---------TCSBCTTTCCBC
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHH---------CcCCCCCCCCcC
Confidence 568899999999999875699999999999999985 126999999976
No 15
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.16 E-value=2.1e-11 Score=89.22 Aligned_cols=52 Identities=25% Similarity=0.540 Sum_probs=41.9
Q ss_pred CCCCCCCcccccccCCCCc--eeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 13 CSSENPNPCPICLGPVVED--SYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 13 ~~~~~~~~CpICl~~~~~p--~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
........|+||++.+..+ +...+|+|.||..||.+|++. ...||+||+.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----------~~~CP~Cr~~~~ 63 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----------HDSCPVCRKSLT 63 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----------TCSCTTTCCCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----------CCcCcCcCCccC
Confidence 3445678999999999754 344589999999999999973 579999998754
No 16
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.16 E-value=1.4e-11 Score=100.21 Aligned_cols=49 Identities=35% Similarity=0.819 Sum_probs=42.1
Q ss_pred CCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccee
Q 045854 18 PNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSII 77 (272)
Q Consensus 18 ~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~ 77 (272)
...|+||++.+.+|+.+ +|||+||..||..|+.. ...||+||+++....
T Consensus 53 ~~~C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~----------~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTL-NCAHSFCSYCINEWMKR----------KIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBCSSEEEE-TTSCEEEHHHHHHHTTT----------CSBCTTTCCBCCCEE
T ss_pred cCCCcccCcccCCceEC-CCCCCccHHHHHHHHHc----------CCcCCCCCCcCCCCC
Confidence 46799999999999766 89999999999999873 578999999875443
No 17
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=6.8e-11 Score=83.07 Aligned_cols=48 Identities=33% Similarity=0.785 Sum_probs=40.2
Q ss_pred CCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCC
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLC 69 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlC 69 (272)
...+...|+||++.+.+|+.+ +|||+||..||.+|++.. +....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~-------~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETS-------CGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHHC-------SSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHcC-------CCCCcCcCC
Confidence 345678999999999999777 899999999999999831 135789998
No 18
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.13 E-value=2.1e-11 Score=94.94 Aligned_cols=49 Identities=29% Similarity=0.760 Sum_probs=43.2
Q ss_pred CCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
.+...|+||++.+.+|+.+.+|||+||..||..|+.. ...||+|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----------~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET----------SKYCPICDVQVH 61 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS----------CSBCTTTCCBSC
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh----------CCcCcCCCcccc
Confidence 4578899999999999887799999999999999973 579999998754
No 19
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.13 E-value=6.9e-11 Score=87.06 Aligned_cols=56 Identities=27% Similarity=0.552 Sum_probs=44.4
Q ss_pred CCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
...+...|+||++.+.+|+.+ +|||.||..|+..|+.... ..+....||+||..+.
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~----~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSA-DCNHSFCRACITLNYESNR----NTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEEC-TTSCCBCHHHHHHHHHHSB----CTTSCBCCTTTCCCCC
T ss_pred hCccCCCCcCCChhhCcceeC-CCCCHHHHHHHHHHHHhcc----CCCCCCCCCCCCCcCC
Confidence 345678999999999999765 8999999999999998411 1223679999998764
No 20
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.13 E-value=5.2e-11 Score=81.14 Aligned_cols=48 Identities=27% Similarity=0.586 Sum_probs=40.1
Q ss_pred CCCcccccccCCCC---ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 17 NPNPCPICLGPVVE---DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 17 ~~~~CpICl~~~~~---p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
....|+||++.+.+ +..+.+|||.||..||.+|++. ...||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----------~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE----------GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH----------TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc----------CCcCCCCCCcCC
Confidence 45689999999865 3566689999999999999985 479999998753
No 21
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.12 E-value=1.4e-11 Score=90.13 Aligned_cols=58 Identities=29% Similarity=0.603 Sum_probs=45.3
Q ss_pred CCCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 13 CSSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 13 ~~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
....+...|+||++.+.+|+.+ +|||.||..||..|++... ...+....||+||.++.
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~~---~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSL-DCGHSLCRACITVSNKEAV---TSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCC-SSSCCCCHHHHSCCCCCCS---SSCCCCCCCSSSCCCCC
T ss_pred hhcccCCCCcCCCcccCCeeEC-CCCCHHHHHHHHHHHHhcc---cCCCCCCcCCCCCCcCC
Confidence 4556788999999999999776 8999999999999986310 11123679999998764
No 22
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.12 E-value=2.8e-11 Score=82.61 Aligned_cols=49 Identities=29% Similarity=0.796 Sum_probs=39.9
Q ss_pred CCCCcccccccCCCC---ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 16 ENPNPCPICLGPVVE---DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 16 ~~~~~CpICl~~~~~---p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
++...|+||++.+.+ +..+..|||.||..||.+|++. ...||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----------~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----------HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----------CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----------CCcCcCCCCEeE
Confidence 456789999999976 5455359999999999999873 578999998753
No 23
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=8e-11 Score=87.64 Aligned_cols=54 Identities=26% Similarity=0.665 Sum_probs=43.6
Q ss_pred CCCCCCCcccccccCCCC----ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 13 CSSENPNPCPICLGPVVE----DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 13 ~~~~~~~~CpICl~~~~~----p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
....+...|+||++.+.+ |..+ +|||.||..|+..|++.. +....||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~-------~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASS-------INGVRCPFCSKITR 67 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHC-------SSCBCCTTTCCCBC
T ss_pred hhccCCCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcC-------CCCcCCCCCCCccc
Confidence 445667899999999988 7555 899999999999999841 12479999998753
No 24
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.11 E-value=3.9e-11 Score=91.86 Aligned_cols=48 Identities=23% Similarity=0.586 Sum_probs=42.2
Q ss_pred CCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 17 NPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
+...|+||++.+.+|+.+.+|||.||..||..|+.. ...||+||+.+.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----------~~~CP~Cr~~~~ 68 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY----------KTQCPTCCVTVT 68 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT----------CCBCTTTCCBCC
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC----------CCCCCCCCCcCC
Confidence 457899999999999777789999999999999973 579999998754
No 25
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=4.1e-11 Score=84.83 Aligned_cols=49 Identities=24% Similarity=0.520 Sum_probs=39.8
Q ss_pred CCCccccccc-CCCCce---eecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 17 NPNPCPICLG-PVVEDS---YLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 17 ~~~~CpICl~-~~~~p~---~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
++..|+||++ .+.+|. .+.+|||+||..||.+|+.. ....||+||+++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~---------~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR---------GAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT---------TSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc---------CCCcCCCCCCccc
Confidence 3568999999 787774 35689999999999999763 3568999998763
No 26
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.10 E-value=2.7e-11 Score=84.80 Aligned_cols=48 Identities=29% Similarity=0.628 Sum_probs=40.2
Q ss_pred CCCcccccccCCCCce------eecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 17 NPNPCPICLGPVVEDS------YLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~------~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
+...|+||++.+.++. .+.+|||.||..|+.+|++. ...||+||+++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----------~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----------ANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH----------CSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc----------CCCCCCCCccCC
Confidence 4578999999988762 55589999999999999984 579999998764
No 27
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.10 E-value=4.9e-11 Score=95.06 Aligned_cols=49 Identities=20% Similarity=0.486 Sum_probs=42.0
Q ss_pred CCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 045854 17 NPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVS 75 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~ 75 (272)
+...|+||++.+.+|+.+ +|||+||..||..|+.. ....||+||+++..
T Consensus 51 ~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~---------~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITT-VCQHNVCKDCLDRSFRA---------QVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHT---------TCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEe-eCCCcccHHHHHHHHhH---------CcCCCCCCCccCCC
Confidence 457899999999999776 89999999999999973 35699999998643
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.1e-10 Score=85.92 Aligned_cols=56 Identities=27% Similarity=0.595 Sum_probs=44.5
Q ss_pred CCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
...+...|+||++.+.+|+.+ +|||.||..|+..|+..... .+....||+||..+.
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~----~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSML----DKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHHHH----TTSCCCCTTTCCSSC
T ss_pred HccCCCCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHhhc----CCCCCcCCCCCCccC
Confidence 345678999999999999766 89999999999999874211 123679999998764
No 29
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.09 E-value=6e-11 Score=93.92 Aligned_cols=52 Identities=31% Similarity=0.606 Sum_probs=43.7
Q ss_pred CCCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 13 CSSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 13 ~~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
....+...|+||++.+.+|+.+ +|||+||..||..|++. ....||+||.++.
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~---------~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRD---------AGHKCPVDNEILL 64 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHH---------HCSBCTTTCCBCC
T ss_pred cCCCCCCCCCcCChhhcCeEEC-CcCChhhHHHHHHHHhh---------CCCCCCCCCCCcC
Confidence 4556678999999999999666 89999999999999985 1349999998764
No 30
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.08 E-value=5.8e-11 Score=89.96 Aligned_cols=51 Identities=27% Similarity=0.574 Sum_probs=40.6
Q ss_pred CCCCCcccccccCCCC--ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 045854 15 SENPNPCPICLGPVVE--DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVS 75 (272)
Q Consensus 15 ~~~~~~CpICl~~~~~--p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~ 75 (272)
..+...|+||++.+.. .....+|||.||..||..|++. ...||+||+.+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----------~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----------SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----------TCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----------CCcCcCcCccCCC
Confidence 3456789999998876 2233479999999999999973 5699999987654
No 31
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=6.4e-11 Score=86.16 Aligned_cols=50 Identities=22% Similarity=0.664 Sum_probs=41.1
Q ss_pred CCCCCcccccccCCCCc--eeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 15 SENPNPCPICLGPVVED--SYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 15 ~~~~~~CpICl~~~~~p--~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
..+...|+||++.+..+ +...+|+|.||..||..|++. ...||+||+++.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----------~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----------NRTCPICRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----------CSSCTTTCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----------CCcCcCcCCcCC
Confidence 44567899999998775 344489999999999999984 468999998764
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.5e-10 Score=79.62 Aligned_cols=48 Identities=31% Similarity=0.816 Sum_probs=39.2
Q ss_pred CCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCC
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLC 69 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlC 69 (272)
...+...|+||++.+.+|+.+ +|||.||..||..|+.. ......||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-------~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVII-ECGHNFCKACITRWWED-------LERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCC-SSCCCCCHHHHHHHTTS-------SCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeC-CCCCccCHHHHHHHHHh-------cCCCCCCCCC
Confidence 445678999999999999665 89999999999999652 1135789998
No 33
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.04 E-value=1.1e-10 Score=97.44 Aligned_cols=49 Identities=31% Similarity=0.814 Sum_probs=42.5
Q ss_pred CCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 17 NPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
+...|+||++.+.+|+.+.+|||.||..||..|+.. ....||+||.++.
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRS---------GNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT---------TCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh---------CcCCCCCCCCcCC
Confidence 345899999999999888799999999999999983 2578999998764
No 34
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.04 E-value=2e-11 Score=95.95 Aligned_cols=52 Identities=31% Similarity=0.643 Sum_probs=43.4
Q ss_pred CCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVS 75 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~ 75 (272)
...+...|+||++.+.+|+.+ +|||+||..||..|+.. +...||+||..+..
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~---------~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTL-PCNHTLCKPCFQSTVEK---------ASLCCPFCRRRVSS 62 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEEC-TTSCEECHHHHCCCCCT---------TTSBCTTTCCBCHH
T ss_pred CCCCCCCCccCCcccCceeEc-CCCCHHhHHHHHHHHhH---------CcCCCCCCCcccCc
Confidence 344568899999999999777 89999999999999862 35789999997643
No 35
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=5.9e-11 Score=85.02 Aligned_cols=51 Identities=25% Similarity=0.764 Sum_probs=42.2
Q ss_pred CCCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 045854 13 CSSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVS 75 (272)
Q Consensus 13 ~~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~ 75 (272)
....+...|+||++.+.+ .+.+|||.||..||..|++ ....||+||+++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~----------~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD--LILPCAHSFCQKCIDKWSD----------RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS--EEETTTEEECHHHHHHSSC----------CCSSCHHHHHCTTC
T ss_pred hcCCCCCCCeeCCcCccC--cccCCCCcccHHHHHHHHH----------CcCcCCCcCCcccC
Confidence 344567899999999988 4458999999999999987 36799999987653
No 36
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.03 E-value=2.4e-10 Score=85.75 Aligned_cols=50 Identities=10% Similarity=-0.037 Sum_probs=43.3
Q ss_pred CCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
...+.+.||||++.+.+|+.+ +|||+||..||..|+.. ...||+|+.++.
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~----------~~~cP~~~~~l~ 59 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRL-PSGTVMDRSIILRHLLN----------SPTDPFNRQMLT 59 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHH----------CSBCTTTCCBCC
T ss_pred cCchheECcccCchhcCCeEC-CCCCEECHHHHHHHHhc----------CCCCCCCcCCCC
Confidence 345689999999999999777 69999999999999983 579999998753
No 37
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.02 E-value=2.7e-10 Score=84.36 Aligned_cols=53 Identities=25% Similarity=0.555 Sum_probs=40.1
Q ss_pred CCCCCCCcccccccCCCC-ceeecC--CCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 13 CSSENPNPCPICLGPVVE-DSYLDK--CFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 13 ~~~~~~~~CpICl~~~~~-p~~l~~--CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
....+...||||++++.. +....+ |||+||..|+..++.. ....||.||+++.
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~---------~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD---------ENGLCPACRKPYP 61 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS---------SCSBCTTTCCBCS
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc---------CCCCCCCCCCccC
Confidence 445678899999998852 223334 9999999999998642 3578999999864
No 38
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.02 E-value=3.3e-10 Score=88.65 Aligned_cols=55 Identities=29% Similarity=0.477 Sum_probs=41.6
Q ss_pred CCCcccccccCCCCce-----------------eecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccce
Q 045854 17 NPNPCPICLGPVVEDS-----------------YLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSI 76 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~-----------------~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~ 76 (272)
.+..|+||++.+..+. .+.+|+|.||..||..|+... .......||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~-----~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG-----NKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHT-----CCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcc-----cCCCCCcCCCCCCccCCC
Confidence 3468999999997643 266899999999999999631 112357999999976543
No 39
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2.3e-10 Score=84.94 Aligned_cols=50 Identities=30% Similarity=0.707 Sum_probs=40.7
Q ss_pred CCCCcccccccCCCC--------------ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 045854 16 ENPNPCPICLGPVVE--------------DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVS 75 (272)
Q Consensus 16 ~~~~~CpICl~~~~~--------------p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~ 75 (272)
.+...|+||++.+.+ +..+.+|+|.||..||.+|++. ...||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----------~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ----------NNRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT----------CCBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh----------CCCCCCcCCCcch
Confidence 356789999999966 4455579999999999999983 5699999998643
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.00 E-value=2e-10 Score=95.04 Aligned_cols=49 Identities=24% Similarity=0.594 Sum_probs=41.7
Q ss_pred CCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 045854 17 NPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVS 75 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~ 75 (272)
+...|+||++.+.+|+.+ +|||+||..||..|+.. ....||+||.++..
T Consensus 77 ~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~---------~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTT-ECFHNVCKDCLQRSFKA---------QVFSCPACRHDLGQ 125 (150)
T ss_dssp HHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHT---------TCCBCTTTCCBCCT
T ss_pred cCCEeecCChhhcCCEEc-CCCCchhHHHHHHHHHh---------CCCcCCCCCccCCC
Confidence 356899999999999775 89999999999999983 24689999997643
No 41
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.99 E-value=3.6e-10 Score=87.45 Aligned_cols=50 Identities=10% Similarity=-0.007 Sum_probs=43.1
Q ss_pred CCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
...+.+.||||++.+.+|+.+ +|||+||..||..|+. ....||.|+.++.
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~----------~~~~cP~~~~~l~ 74 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRL-PSGTIMDRSIILRHLL----------NSPTDPFNRQTLT 74 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEE-TTTEEEEHHHHHHHTT----------SCSBCSSSCCBCC
T ss_pred cCcHhhCCcCccCcccCCeEC-CCCCEEchHHHHHHHH----------cCCCCCCCCCCCC
Confidence 345678999999999999877 6999999999999987 2579999998754
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=4.1e-10 Score=87.51 Aligned_cols=50 Identities=34% Similarity=0.714 Sum_probs=41.0
Q ss_pred CCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 17 NPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
+...|+||++.+.+|+.+ +|||.||..||..|+... .+...||+|+.++.
T Consensus 20 ~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~-------~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 20 KILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQK-------KGPSQCPLCKNDIT 69 (112)
T ss_dssp HHTSCSSSCCCCSSCCBC-TTSCCCCSHHHHHHHHSS-------SSSCCCTTTSCCCC
T ss_pred CCCCCcccChhhcCeEEC-CCCCHHHHHHHHHHHHhC-------CCCCCCcCCCCcCC
Confidence 356899999999999765 899999999999999831 12368999998754
No 43
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.97 E-value=6.4e-10 Score=85.75 Aligned_cols=48 Identities=10% Similarity=-0.032 Sum_probs=41.9
Q ss_pred CCCCcccccccCCCCceeecCCC-CcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCF-HKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~Cg-H~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
.+.+.||||++.+.+|+++ +|| |+||..||..|+.. ...||+|+.++.
T Consensus 20 p~~~~CpI~~~~m~dPV~~-~cG~htf~r~cI~~~l~~----------~~~cP~~~~~l~ 68 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVL-PSSRVTVDRSTIARHLLS----------DQTDPFNRSPLT 68 (98)
T ss_dssp CTTTBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHTTT----------SCBCTTTCSBCC
T ss_pred cHhcCCcCccccccCCeEC-CCCCeEECHHHHHHHHHh----------CCCCCCCCCCCC
Confidence 4578999999999999776 799 99999999999872 568999998754
No 44
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.96 E-value=1.4e-10 Score=80.20 Aligned_cols=47 Identities=21% Similarity=0.552 Sum_probs=39.2
Q ss_pred CCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 045854 15 SENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVS 75 (272)
Q Consensus 15 ~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~ 75 (272)
..+...|+||++.+.+|+.+ +|||+||..|+..| ...||+||+.+..
T Consensus 3 e~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~-------------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLL-PCLHTLCSGCLEAS-------------GMQCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCS-TTSCCSBTTTCSSS-------------SSSCSSCCSSSSC
T ss_pred cccCCCceEeCCccCCeEEc-CCCCcccHHHHccC-------------CCCCCcCCcEeec
Confidence 35678899999999999665 79999999999773 4689999997654
No 45
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=8.3e-10 Score=84.20 Aligned_cols=55 Identities=20% Similarity=0.323 Sum_probs=43.0
Q ss_pred CCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCC--CCcc
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPL--CKTE 72 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPl--Cr~~ 72 (272)
+....+.||||++.+.+|+.+..|||+||..||..|+.... ..+....||+ |+..
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~----~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQ----KRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHH----TTTCCBCCCSTTCCCC
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHcc----CcCCCCCCCcCcCccc
Confidence 34567899999999999988745999999999999998421 1113568999 8854
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.93 E-value=6.4e-10 Score=87.46 Aligned_cols=48 Identities=29% Similarity=0.618 Sum_probs=41.4
Q ss_pred CCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 17 NPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
+...|+||++.+.+|+.+ +|||.||..||..|+.. ....||+||.++.
T Consensus 22 ~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~---------~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 22 KSISCQICEHILADPVET-SCKHLFCRICILRCLKV---------MGSYCPSCRYPCF 69 (116)
T ss_dssp HHTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHH---------TCSBCTTTCCBCC
T ss_pred CCCCCCCCCcHhcCcEEc-CCCCcccHHHHHHHHhH---------CcCcCCCCCCCCC
Confidence 467899999999999775 89999999999999984 2468999998754
No 47
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.92 E-value=4.9e-10 Score=79.64 Aligned_cols=55 Identities=25% Similarity=0.549 Sum_probs=44.8
Q ss_pred CCCCCcccccccCCCCceee-cCCCCc-ccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccceeec
Q 045854 15 SENPNPCPICLGPVVEDSYL-DKCFHK-FCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHG 79 (272)
Q Consensus 15 ~~~~~~CpICl~~~~~p~~l-~~CgH~-FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~~~ 79 (272)
..+...|+||++...+++.+ .||||. ||..|+..|.+. ...||+||+++..++..
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~----------~~~CPiCR~~i~~~i~i 61 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR----------NKPCPVCRQPIQMIVLT 61 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT----------TCCCTTTCCCCCEEEEE
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc----------CCcCCCcCcchhceEee
Confidence 34566899999999998653 389998 899999999873 57899999998776554
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.91 E-value=3.7e-10 Score=89.73 Aligned_cols=49 Identities=29% Similarity=0.633 Sum_probs=40.9
Q ss_pred CCCCcccccccCCCCc------eeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 16 ENPNPCPICLGPVVED------SYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p------~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
.+...|+||++.+.+| .++.+|||.||..||.+|++. ...||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----------~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----------ANTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT----------CSBCTTTCCBCT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh----------CCCCCCCCCcCc
Confidence 4568899999999887 144489999999999999973 569999998763
No 49
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.90 E-value=1.2e-10 Score=95.42 Aligned_cols=48 Identities=21% Similarity=0.517 Sum_probs=40.9
Q ss_pred CCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
.+...|+||++.+.+|+.+ +|||+||..||..|++. ....||+||.++
T Consensus 29 ~~~~~C~IC~~~~~~pv~~-~CgH~FC~~Ci~~~~~~---------~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQA-QCGHRYCSFCLASILSS---------GPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHGGG---------SCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEEC-CCCCccCHHHHHHHHhc---------CCCCCCCCCCcc
Confidence 4567999999999999665 89999999999999873 245899999864
No 50
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.89 E-value=1.2e-09 Score=97.10 Aligned_cols=51 Identities=8% Similarity=-0.102 Sum_probs=42.7
Q ss_pred CCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
.......||||++.+.+|+++ +|||+||..||..|+.. +...||+|+.++.
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~-~~gh~f~~~~i~~~~~~---------~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQR---------VGHFNPVTRSPLT 254 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEEC-SSCCEEETTHHHHHHHH---------TCSSCTTTCCCCC
T ss_pred CCCcccCCcCcCCHhcCCeEC-CCCCEECHHHHHHHHHH---------CCCCCcCCCCCCc
Confidence 445678999999999999776 79999999999999974 2345999998764
No 51
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.89 E-value=1.2e-09 Score=85.46 Aligned_cols=48 Identities=29% Similarity=0.639 Sum_probs=40.3
Q ss_pred CCCcccccccCCCCc-----------------eeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 17 NPNPCPICLGPVVED-----------------SYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 17 ~~~~CpICl~~~~~p-----------------~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
+...|+||++.+..+ +.+.+|+|.||..||..|++. ...||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----------~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----------RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT----------CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc----------CCcCcCCCCcce
Confidence 457899999998865 455689999999999999983 679999999753
No 52
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=2.6e-10 Score=90.12 Aligned_cols=46 Identities=33% Similarity=0.681 Sum_probs=40.4
Q ss_pred CCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
.+...|+||++.+.+|+.+.+|||+||..||..|+. ..||+||..+
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~------------~~CP~Cr~~~ 65 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG------------TGCPVCYTPA 65 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT------------TBCSSSCCBC
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc------------CCCcCCCCcC
Confidence 357899999999999977768999999999999964 5899999874
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.84 E-value=1.2e-09 Score=77.36 Aligned_cols=53 Identities=25% Similarity=0.592 Sum_probs=43.0
Q ss_pred CCCcccccccCCCCceee-cCCCCc-ccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccceeec
Q 045854 17 NPNPCPICLGPVVEDSYL-DKCFHK-FCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHG 79 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l-~~CgH~-FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~~~ 79 (272)
....|+||++...+++.+ .||||. ||..|+..|.+. ...||+||+++..++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~----------~~~CPiCR~~i~~~i~i 60 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA----------GASCPICKKEIQLVIKV 60 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT----------TCBCTTTCCBCCEEEEE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh----------CCcCCCcCchhhceEEE
Confidence 345799999999887543 489997 999999999872 57999999998776654
No 54
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.83 E-value=1.6e-09 Score=90.76 Aligned_cols=53 Identities=30% Similarity=0.596 Sum_probs=44.2
Q ss_pred CCCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 045854 13 CSSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVS 75 (272)
Q Consensus 13 ~~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~ 75 (272)
....+.+.|+||++.+.+|+.+ +|||+||..||..|+.. +...||+||.++..
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~---------~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRD---------AGHKCPVDNEILLE 65 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHH---------HCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCCCChhhcCcEEC-CCCCHHHHHHHHHHHHh---------CCCCCCCCccCcch
Confidence 3556678999999999999775 89999999999999974 13599999987643
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.82 E-value=1.8e-09 Score=78.74 Aligned_cols=48 Identities=25% Similarity=0.500 Sum_probs=40.7
Q ss_pred CCCcccccccCCCCceeecCCCCc-ccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccceeec
Q 045854 17 NPNPCPICLGPVVEDSYLDKCFHK-FCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHG 79 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~~CgH~-FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~~~ 79 (272)
+...|+||++.+.+++.+ +|||. ||..|+..| ..||+||+++...+..
T Consensus 23 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~--------------~~CP~Cr~~i~~~~~i 71 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV--------------DKCPMCYTVITFKQKI 71 (74)
T ss_dssp HHTBCTTTSSSBCCEEEE-TTCCBCCCHHHHTTC--------------SBCTTTCCBCSEEEEC
T ss_pred cCCCCCCCCCCCCCEEEc-CCCChhHHHHhhhcC--------------ccCCCcCcCccCcEEE
Confidence 357899999999999776 89999 999999877 4899999998776543
No 56
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=1.2e-08 Score=73.27 Aligned_cols=51 Identities=25% Similarity=0.557 Sum_probs=41.6
Q ss_pred CCCCcccccccCCCCceeecCCCCc-ccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccceeeccc
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHK-FCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGYD 81 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~-FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~~~~~ 81 (272)
.+...|+||++...+++.+ ||||. ||..|+.. ...||+||+.+...+.-+.
T Consensus 13 ~~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~--------------~~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLL-PCRHTCLCDGCVKY--------------FQQCPMCRQFVQESFALSG 64 (68)
T ss_dssp CCSSCCSSSSSSCCCCEET-TTTBCCSCTTHHHH--------------CSSCTTTCCCCCCEECCCS
T ss_pred CCCCCCCCcCcCCCCEEEE-CCCChhhhHHHHhc--------------CCCCCCCCcchhceEEeec
Confidence 4567899999999988555 89998 99999973 3689999999877766544
No 57
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.75 E-value=5.9e-09 Score=98.46 Aligned_cols=49 Identities=24% Similarity=0.625 Sum_probs=41.6
Q ss_pred CCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccce
Q 045854 18 PNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSI 76 (272)
Q Consensus 18 ~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~ 76 (272)
...|+||++.+.+|+.+ +|||.||..|+..|+.. ....||+||+++...
T Consensus 332 ~~~C~ICle~~~~pv~l-pCGH~FC~~Ci~~wl~~---------~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIE-PCGHLMCTSCLTSWQES---------EGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEE-TTCCEECHHHHHHHHHH---------TCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEe-CCCChhhHHHHHHHHhc---------CCCCCCCCCCccCCc
Confidence 36899999999998665 89999999999999873 257999999987543
No 58
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.75 E-value=5.5e-09 Score=88.99 Aligned_cols=51 Identities=8% Similarity=-0.114 Sum_probs=42.8
Q ss_pred CCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
...+.+.||||++.+.+|+++ +|||+||..||..|+.. ....||.|+.++.
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~-~~Ghtfer~~I~~~l~~---------~~~tcP~t~~~l~ 152 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQR---------VGHFDPVTRSPLT 152 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHH---------TCSBCTTTCCBCC
T ss_pred CCcHhhcccCccccCCCCeEC-CCCCEECHHHHHHHHHh---------CCCCCCCCcCCCC
Confidence 345678999999999999777 89999999999999974 1237999998753
No 59
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=9.4e-09 Score=74.88 Aligned_cols=46 Identities=26% Similarity=0.559 Sum_probs=37.9
Q ss_pred CCcccccccCCCCceeecCCCCc-ccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccceee
Q 045854 18 PNPCPICLGPVVEDSYLDKCFHK-FCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIH 78 (272)
Q Consensus 18 ~~~CpICl~~~~~p~~l~~CgH~-FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~~ 78 (272)
...|+||++.+.+++.+ +|||. ||..|+.. ...||+||.++...+.
T Consensus 25 ~~~C~IC~~~~~~~~~~-pCgH~~~C~~C~~~--------------~~~CP~Cr~~i~~~~~ 71 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFV-PCGHLVTCKQCAEA--------------VDKCPMCYTVITFKQK 71 (75)
T ss_dssp HHSCSSSCSSCCCBCCS-SSCCCCBCHHHHHH--------------CSBCTTTCCBCCCCCB
T ss_pred CCCCCcCCCCCCCEEEe-cCCCHHHHHHHhhC--------------CCCCccCCceecCcEE
Confidence 45799999999998665 89999 99999943 3689999998766544
No 60
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.72 E-value=7.1e-09 Score=92.97 Aligned_cols=50 Identities=24% Similarity=0.438 Sum_probs=42.2
Q ss_pred CCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCC--CCcc
Q 045854 15 SENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPL--CKTE 72 (272)
Q Consensus 15 ~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPl--Cr~~ 72 (272)
......||||++.+.+|++...|||+||..||..|+.. ++...||+ |+..
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~--------~~~~~CPvtGCr~~ 229 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQG--------YTTRDCPQAACSQV 229 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTT--------CSCEECSGGGCSCE
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHh--------CCCCCCCcccccCc
Confidence 34678999999999999887789999999999999862 12468999 9975
No 61
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.70 E-value=2.1e-09 Score=85.60 Aligned_cols=48 Identities=29% Similarity=0.639 Sum_probs=0.8
Q ss_pred CCCcccccccCCCCc-----------------eeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 17 NPNPCPICLGPVVED-----------------SYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 17 ~~~~CpICl~~~~~p-----------------~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
....|+||++.+..+ +.+.+|+|.||..||.+|++. ...||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~----------~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----------RQVCPLDNREWE 111 (117)
T ss_dssp CC-------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc----------CCcCCCCCCeee
Confidence 347899999998763 233489999999999999984 578999999753
No 62
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.69 E-value=5.8e-09 Score=82.70 Aligned_cols=49 Identities=29% Similarity=0.633 Sum_probs=40.7
Q ss_pred CCCCcccccccCCCCc------eeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 16 ENPNPCPICLGPVVED------SYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p------~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
.+...|+||++.+.++ ....+|||.||..||.+|++. ...||+||+++.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----------~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----------ANTCPTCRKKIN 124 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH----------CSBCTTTCCBCC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc----------CCCCCCCCCcCC
Confidence 4567899999998765 244589999999999999984 579999998763
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.63 E-value=1.5e-08 Score=74.86 Aligned_cols=50 Identities=22% Similarity=0.642 Sum_probs=40.9
Q ss_pred CCCcccccccCCCCceeecCCCCc-ccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccceeeccc
Q 045854 17 NPNPCPICLGPVVEDSYLDKCFHK-FCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGYD 81 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~~CgH~-FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~~~~~ 81 (272)
+...|+||++.+.+++.+ ||||. ||..|+..| ..||+||+++...+..+.
T Consensus 17 ~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~~--------------~~CP~Cr~~i~~~~~i~~ 67 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFC-PCGHTVCCESCAAQL--------------QSCPVCRSRVEHVQHVYL 67 (79)
T ss_dssp HHTBCTTTSSSBCCEEEE-TTCBCCBCHHHHTTC--------------SBCTTTCCBCCEEEECBC
T ss_pred CCCEeEEeCcccCcEEEE-CCCCHHHHHHHHHhc--------------CcCCCCCchhhCeEEEEe
Confidence 346799999999998666 89998 999999764 489999999877665443
No 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=7.5e-08 Score=71.47 Aligned_cols=53 Identities=25% Similarity=0.533 Sum_probs=40.9
Q ss_pred CCCCCCCcccccccCCC--CceeecCCC-----CcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 13 CSSENPNPCPICLGPVV--EDSYLDKCF-----HKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 13 ~~~~~~~~CpICl~~~~--~p~~l~~Cg-----H~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
....+...|+||++.+. ++. +.||. |.|+..||.+|+... ....||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~--------~~~~CplCr~~~~ 69 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSS--------DTRCCELCKYEFI 69 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHH--------CCSBCSSSCCBCC
T ss_pred CCCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhC--------CCCCCCCCCCeee
Confidence 44556678999998774 454 56896 999999999999852 2368999998753
No 65
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.52 E-value=1.5e-07 Score=68.92 Aligned_cols=52 Identities=15% Similarity=0.466 Sum_probs=40.9
Q ss_pred CCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVS 75 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~ 75 (272)
+....|+||.+.+..-..-..|+|.|+..||.+|++.. ....||+|+++...
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~--------~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSN--------AEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTC--------SSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhc--------CCCCCCCCcCcCCC
Confidence 34578999999997654555899999999999999741 13789999987543
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.47 E-value=9e-08 Score=72.47 Aligned_cols=54 Identities=22% Similarity=0.683 Sum_probs=40.1
Q ss_pred CCCcccccccCCCCceee--cCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCC--CCcc
Q 045854 17 NPNPCPICLGPVVEDSYL--DKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPL--CKTE 72 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l--~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPl--Cr~~ 72 (272)
+...|+||++.+..+..+ .+|||.||..|+..++...-.. .......||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~--g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKE--GLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHH--CSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhc--CCcccccCccccCCCC
Confidence 467899999999877544 4799999999999998753211 0112468999 9976
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.42 E-value=4.9e-08 Score=91.03 Aligned_cols=49 Identities=22% Similarity=0.675 Sum_probs=41.9
Q ss_pred CCCcccccccCCCCceeecCCCCc-ccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccceeecc
Q 045854 17 NPNPCPICLGPVVEDSYLDKCFHK-FCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIHGY 80 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~~CgH~-FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~~~~ 80 (272)
+...|+||++.+.+|+.+ ||||. ||..|+..| ..||+||+++...++.+
T Consensus 294 ~~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~~~--------------~~CP~CR~~i~~~~~i~ 343 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFI-PCGHLVVCQECAPSL--------------RKCPICRGIIKGTVRTF 343 (345)
T ss_dssp TTCBCTTTSSSBCCEEEE-TTCCEEECTTTGGGC--------------SBCTTTCCBCCEEEECC
T ss_pred CCCCCCccCCcCCceEEc-CCCChhHhHHHHhcC--------------CcCCCCCCCccCeEEee
Confidence 467899999999999777 89999 999999876 48999999987776543
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.37 E-value=2.3e-07 Score=65.29 Aligned_cols=46 Identities=13% Similarity=0.028 Sum_probs=39.6
Q ss_pred CCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 18 PNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 18 ~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
...||||++.+.+|+.+.+|||+|+..||.+|++. ..+||+++.++
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~----------~~~cP~t~~~L 48 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD----------TGNDPITNEPL 48 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH----------HSBCTTTCCBC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh----------CCCCcCCcCCC
Confidence 46899999999999776579999999999999984 34699999876
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.29 E-value=4.8e-07 Score=69.54 Aligned_cols=50 Identities=28% Similarity=0.565 Sum_probs=43.1
Q ss_pred cccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccceee
Q 045854 20 PCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSIIH 78 (272)
Q Consensus 20 ~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~~ 78 (272)
-|++|--++..-.++.||.|.||+.|+..|.+. +...||.|+.++..+-.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~---------~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKK---------GDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHT---------TCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhc---------cCCCCcCcCCeeeeeEE
Confidence 599999999988888899999999999999874 35799999998766644
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.82 E-value=2.2e-05 Score=54.89 Aligned_cols=50 Identities=18% Similarity=0.489 Sum_probs=38.1
Q ss_pred CCCCcccccccCCCCceeecCCCC-----cccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFH-----KFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH-----~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
++...|.||++...++. +.||.+ .|+..|+.+|+... +...||+|+.++.
T Consensus 4 ~~~~~CrIC~~~~~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~--------~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNER-FRACGCTGELENVHRSCLSTWLTIS--------RNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCC-CCSCCCSSGGGSCCHHHHHHHHHHH--------TCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCce-ecCcCCCCchhhhHHHHHHHHHHhC--------CCCccCCCCCeee
Confidence 34568999998766664 468654 79999999999742 2579999998753
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.75 E-value=1.6e-05 Score=73.89 Aligned_cols=61 Identities=25% Similarity=0.508 Sum_probs=41.3
Q ss_pred CCCCCcccccccCCCC----ce---eecCCCCcccHHHHHHHHHHhhhcccCC-CCCCCCCCCCccccc
Q 045854 15 SENPNPCPICLGPVVE----DS---YLDKCFHKFCYNCIVHWTKVVASKHSSL-LSSVKCPLCKTENVS 75 (272)
Q Consensus 15 ~~~~~~CpICl~~~~~----p~---~l~~CgH~FC~~Ci~~w~~~~~~k~~~~-~~~~~CPlCr~~~~~ 75 (272)
.+....|+||+..+.+ |. ...+|+|.|+..|+.+|++...+..... .....||.|++++..
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3456789999998765 21 1237999999999999998533111111 112579999998654
No 72
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.23 E-value=0.00043 Score=52.49 Aligned_cols=62 Identities=24% Similarity=0.408 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHhHhhcccchHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhccccccchhhhHHHHHHHH
Q 045854 138 QWLQSWLRREIQAVMQEEDVEIVVHHILGVVDSFLKRNKQRCQMGTPETKEEDFKALVSDAARPFLMARTDRFVNEMQLF 217 (272)
Q Consensus 138 ~Rl~~Wl~REL~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~~~~fl~~~t~~F~HEl~~F 217 (272)
..+.|||...|.-+++.+| +.|++||++.+++. .+..+ +.+.|.+||.+.|..|+-||+..
T Consensus 16 ~~lkpWI~kkv~e~LG~eD-~~lVd~i~~~l~~~--------------~dpk~----l~~~L~~fLd~~a~~Fv~eLW~l 76 (92)
T 1x4q_A 16 DELKPWIEKTVKRVLGFSE-PTVVTAALNCVGKG--------------MDKKK----AADHLKPFLDDSTLRFVDKLFEA 76 (92)
T ss_dssp HHHHHHHHHHHHHHHSSCC-HHHHHHHHHHHHTT--------------CCHHH----HHHHHTTTTGGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHcC--------------CCHHH----HHHHHHHHhhhhHHHHHHHHHHH
Confidence 5699999999999999766 56778888887631 11222 55678999999999999999988
Q ss_pred H
Q 045854 218 L 218 (272)
Q Consensus 218 a 218 (272)
+
T Consensus 77 L 77 (92)
T 1x4q_A 77 V 77 (92)
T ss_dssp H
T ss_pred H
Confidence 7
No 73
>1mp1_A Ser/Arg-related nuclear matrix protein; four helix bundle, RNA binding protein; NMR {Homo sapiens} SCOP: a.188.1.1
Probab=96.62 E-value=0.0017 Score=50.87 Aligned_cols=64 Identities=17% Similarity=0.491 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHhHhhcccchHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhcccccc-chhhhHHHHHHH
Q 045854 138 QWLQSWLRREIQAVMQEEDVEIVVHHILGVVDSFLKRNKQRCQMGTPETKEEDFKALVSDAARPFLM-ARTDRFVNEMQL 216 (272)
Q Consensus 138 ~Rl~~Wl~REL~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~~~~fl~-~~t~~F~HEl~~ 216 (272)
..+.|||.+.+..++|.+| ++|+.||++.|+. . .|. .. .+...|.+||. ..|.-|+.||+.
T Consensus 23 ~~ikpWI~kki~e~LG~ED-dvlid~i~~~L~~-------~----~~d--pk----~lqi~L~gFL~~e~a~~Fv~eLW~ 84 (111)
T 1mp1_A 23 EVIKPWITKRVTEILGFED-DVVIEFIFNQLEV-------K----NPD--SK----MMQINLTGFLNGKNAREFMGELWP 84 (111)
T ss_dssp GGGHHHHHHHHHHHHSSCC-SHHHHHHHHHTTS-------S----SCC--HH----HHHHHHTTTSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcc-HHHHHHHHHHhhc-------c----CCC--HH----HHHHHHHHHhCcccHHHHHHHHHH
Confidence 5699999999999998544 6888999888642 0 121 11 14457899998 789999999998
Q ss_pred HHh
Q 045854 217 FLA 219 (272)
Q Consensus 217 Fa~ 219 (272)
-+-
T Consensus 85 LLi 87 (111)
T 1mp1_A 85 LLL 87 (111)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.47 E-value=0.0018 Score=57.07 Aligned_cols=51 Identities=16% Similarity=0.442 Sum_probs=39.7
Q ss_pred CCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccce
Q 045854 18 PNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSI 76 (272)
Q Consensus 18 ~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~ 76 (272)
-..|.||.+....-..-..|+|.|+..|+..|++.. +...||.|+.....-
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~--------~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSN--------AEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTC--------SSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhC--------CCCCCCCCCCCCCCC
Confidence 567999999888655554699999999999998731 256999999864433
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=95.90 E-value=0.016 Score=42.62 Aligned_cols=39 Identities=28% Similarity=0.726 Sum_probs=31.1
Q ss_pred CCCCCCcccccccCCCCceeecCC----CCcccHHHHHHHHHHh
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKC----FHKFCYNCIVHWTKVV 53 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~C----gH~FC~~Ci~~w~~~~ 53 (272)
.....+.|.+|.+.+++.-+. .| +|.||+.|-...++.+
T Consensus 11 ~~~a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 11 ANSGPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CSCCSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHHH
T ss_pred CCCCeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHhc
Confidence 345678999999999986554 24 7899999999998853
No 76
>3v53_A RNA-binding protein 25; PWI, RNA-binding domain; 2.90A {Homo sapiens}
Probab=95.31 E-value=0.015 Score=45.86 Aligned_cols=62 Identities=19% Similarity=0.404 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHhHhhcccchHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHhhccccccchhhhHHHHHHHH
Q 045854 138 QWLQSWLRREIQAVMQEEDVEIVVHHILGVVDSFLKRNKQRCQMGTPETKEEDFKALVSDAARPFLMARTDRFVNEMQLF 217 (272)
Q Consensus 138 ~Rl~~Wl~REL~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~~~~fl~~~t~~F~HEl~~F 217 (272)
.++.||+.+-+.-++|.++ +.|+++|++.|+. . ..| . .+.+.|++||-+.|+-|+-+|+..
T Consensus 45 ~~lkPWI~kKI~E~LG~eE-d~LVdfI~~~L~~------~----~~p----k----~l~~~L~~~LDeeA~~FV~kLWrl 105 (119)
T 3v53_A 45 RRIRPWINKKIIEYIGEEE-ATLVDFVCSKVMA------H----SSP----Q----SILDDVAMVLDEEAEVFIVKMWRL 105 (119)
T ss_dssp HTHHHHHHHHHHHHTC----CHHHHHHHHHHHT------T----CCH----H----HHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCch-HHHHHHHHHHHHc------C----CCH----H----HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5799999999999999765 3456788777653 1 111 1 255778999999999999999887
Q ss_pred H
Q 045854 218 L 218 (272)
Q Consensus 218 a 218 (272)
+
T Consensus 106 L 106 (119)
T 3v53_A 106 L 106 (119)
T ss_dssp H
T ss_pred H
Confidence 5
No 77
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.23 E-value=0.01 Score=44.66 Aligned_cols=33 Identities=15% Similarity=0.369 Sum_probs=25.4
Q ss_pred CCCcccccccC-CCCceee-cCCCCcccHHHHHHH
Q 045854 17 NPNPCPICLGP-VVEDSYL-DKCFHKFCYNCIVHW 49 (272)
Q Consensus 17 ~~~~CpICl~~-~~~p~~l-~~CgH~FC~~Ci~~w 49 (272)
++..|+||.+. +..++.. ..|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 35789999976 4555441 579999999999983
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=87.61 E-value=0.41 Score=44.45 Aligned_cols=50 Identities=16% Similarity=0.414 Sum_probs=37.6
Q ss_pred CCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 18 PNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 18 ~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
.+.|||-...+..|+....|.|.-|+.- ..|+..... .....||+|.+.+
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl-~sfL~~~~~-----~~~W~CPiC~k~~ 264 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDA-ALYLQMNEK-----KPTWICPVCDKKA 264 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEH-HHHHHHHHH-----SCCCBCTTTCSBC
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCH-HHHHHHHhh-----CCCeECCCCCccc
Confidence 4689999999999999999999977753 334443221 2568999999864
No 79
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=87.26 E-value=0.48 Score=44.17 Aligned_cols=50 Identities=20% Similarity=0.495 Sum_probs=37.4
Q ss_pred CCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 18 PNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 18 ~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
.+.||+-...+..|+....|.|.-|+.- ..|+.... ......||+|.+.+
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl-~sfL~~~~-----~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDA-LWFLHSQL-----QIPTWQCPVCQIDI 298 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEH-HHHHHHHH-----HSCCCBCTTTCCBC
T ss_pred eecCCCccccccccCcCCcCCCcceECH-HHHHHHhh-----cCCceeCCCCCccc
Confidence 4789999999999999999999877764 23333211 12578999998764
No 80
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=87.01 E-value=0.43 Score=36.02 Aligned_cols=48 Identities=29% Similarity=0.670 Sum_probs=36.1
Q ss_pred CCCcccccccCCCCceeecCC-CCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccee
Q 045854 17 NPNPCPICLGPVVEDSYLDKC-FHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSII 77 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~~C-gH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~~ 77 (272)
....|..|.-..+. .+ .| -|-.|..|+...+.. +..||+|+.++...+
T Consensus 27 G~~nCKsCWf~~k~--LV-~C~dHYLCl~CLtlmL~~----------SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 27 GPQFCKSCWFENKG--LV-ECNNHYLCLNCLTLLLSV----------SNRCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCCSSCSCCSS--EE-ECSSCEEEHHHHHHTCSS----------SSEETTTTEECCCCS
T ss_pred CcccChhhccccCC--ee-eecchhhHHHHHHHHHhh----------ccCCcccCCcCCcce
Confidence 45679999876664 33 35 678899999998873 789999998874433
No 81
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=81.57 E-value=1 Score=46.80 Aligned_cols=49 Identities=8% Similarity=-0.052 Sum_probs=41.3
Q ss_pred CCCCCcccccccCCCCceeecCCC-CcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 15 SENPNPCPICLGPVVEDSYLDKCF-HKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 15 ~~~~~~CpICl~~~~~p~~l~~Cg-H~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
..+...|||-++.+.+|+.+ +.| ++|-..+|.+|+.. ..+||.-+.+++
T Consensus 888 iP~~F~cPIs~~lM~DPVil-psG~~TydR~~I~~wl~~----------~~tdP~Tr~~L~ 937 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDPVIL-PASKMNIDRSTIKAHLLS----------DSTDPFNRMPLK 937 (968)
T ss_dssp SCGGGBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHHTT----------CCBCTTTCCBCC
T ss_pred CcHHhCCcchhhHHhCCeEc-CCCCEEECHHHHHHHHhc----------CCCCCCCCCCCC
Confidence 34578899999999999777 787 59999999999973 568999988764
No 82
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=73.14 E-value=1.8 Score=31.93 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=25.0
Q ss_pred CCCCCCCcccccccCCCCcee---ecCCCCcccHHHHHH
Q 045854 13 CSSENPNPCPICLGPVVEDSY---LDKCFHKFCYNCIVH 48 (272)
Q Consensus 13 ~~~~~~~~CpICl~~~~~p~~---l~~CgH~FC~~Ci~~ 48 (272)
....+...|.+|...|.--.. -..||..||..|...
T Consensus 4 ~~~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 4 GSSGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 345556689999998864211 237999999998644
No 83
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=73.06 E-value=2.8 Score=29.20 Aligned_cols=50 Identities=14% Similarity=0.347 Sum_probs=34.1
Q ss_pred CCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
.....|.||.+.- +-+.-..|...|+..|+...+.. .......||.|.+.
T Consensus 10 ~~~~~C~vC~~~~-~ll~Cd~C~~~~H~~Cl~P~l~~------~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDGT-DVLRCTHCAAAFHWRCHFPAGTS------RPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCCT-TCEECSSSCCEECHHHHCTTTCC------CCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCCC-eEEECCCCCCceecccCCCccCc------CCCCCEECccccCC
Confidence 3456799998642 33344578889999999776542 23346789999764
No 84
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=60.62 E-value=5.7 Score=26.95 Aligned_cols=51 Identities=18% Similarity=0.413 Sum_probs=33.6
Q ss_pred CCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCc
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKT 71 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~ 71 (272)
.......|.+|... .+-+.-..|...|+..|+..-+. ........||.|..
T Consensus 7 ~~~~~~~C~vC~~~-g~ll~CD~C~~~fH~~Cl~p~l~------~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG-GEIILCDTCPRAYHMVCLDPDME------KAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCCCSSCTTTSCC-SSEEECSSSSCEEEHHHHCTTCC------SCCCSSCCCTTGGG
T ss_pred cCCCCCCCccCCCC-CcEEECCCCChhhhhhccCCCCC------CCCCCceECccccc
Confidence 34556789999874 23333346777999999976332 12335678999975
No 85
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=59.33 E-value=7.4 Score=28.69 Aligned_cols=55 Identities=15% Similarity=0.307 Sum_probs=32.9
Q ss_pred CCCCCcccccccCCC---CceeecCCCCcccHHHHHHHHHHhhh------cccCCCCCCCCCCCCc
Q 045854 15 SENPNPCPICLGPVV---EDSYLDKCFHKFCYNCIVHWTKVVAS------KHSSLLSSVKCPLCKT 71 (272)
Q Consensus 15 ~~~~~~CpICl~~~~---~p~~l~~CgH~FC~~Ci~~w~~~~~~------k~~~~~~~~~CPlCr~ 71 (272)
...+..|.||-.--. .|.++ |+-+|+..|+.+.-..... ..........||.|..
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCRv--C~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCRV--CTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCSS--SSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCCcccCccccccccceecccc--ccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 345778999984332 24443 8999999999885111000 0011234578999953
No 86
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=53.55 E-value=18 Score=26.91 Aligned_cols=50 Identities=24% Similarity=0.517 Sum_probs=34.1
Q ss_pred CCCcccccccCCCC----ceee--cCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 045854 17 NPNPCPICLGPVVE----DSYL--DKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVS 75 (272)
Q Consensus 17 ~~~~CpICl~~~~~----p~~l--~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~ 75 (272)
..-.|.||-+.+-- .++. ..|+-..|..|..-=.+. ....||-|++.+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErke---------G~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERRE---------GTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHT---------SCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhc---------cCccccccCCcccc
Confidence 34689999987521 1122 257777899998664442 56899999998653
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.64 E-value=1.2 Score=29.84 Aligned_cols=53 Identities=23% Similarity=0.392 Sum_probs=31.6
Q ss_pred CCCCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCc
Q 045854 12 SCSSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKT 71 (272)
Q Consensus 12 ~~~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~ 71 (272)
+.+......|.+|...- .-+.-..|...|+..|+..-+. ........||.|..
T Consensus 3 ~g~~~~~~~C~vC~~~g-~ll~Cd~C~~~~H~~Cl~ppl~------~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 3 SGSSGHEDFCSVCRKSG-QLLMCDTCSRVYHLDCLDPPLK------TIPKGMWICPRCQD 55 (56)
T ss_dssp CCCCSSCCSCSSSCCSS-CCEECSSSSCEECSSSSSSCCC------SCCCSSCCCHHHHC
T ss_pred CCcCCCCCCCccCCCCC-eEEEcCCCCcceECccCCCCcC------CCCCCceEChhhhC
Confidence 34555677899999752 2233346777888888764322 11223566887753
No 88
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=49.25 E-value=1.8 Score=26.46 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=13.9
Q ss_pred CCCcccccccCCCCceee
Q 045854 17 NPNPCPICLGPVVEDSYL 34 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l 34 (272)
+...||||+..+..+..+
T Consensus 4 EGFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEEECTTTCCEESSHHHH
T ss_pred cccCCcHHHHHcCCHHHH
Confidence 458999999988876444
No 89
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=48.84 E-value=7.2 Score=29.51 Aligned_cols=15 Identities=40% Similarity=1.068 Sum_probs=12.6
Q ss_pred cccHHHHHHHHHHhh
Q 045854 40 KFCYNCIVHWTKVVA 54 (272)
Q Consensus 40 ~FC~~Ci~~w~~~~~ 54 (272)
.||..|+..|....+
T Consensus 41 GFCRNCLskWy~~aA 55 (104)
T 3fyb_A 41 DFCRNCLAKWLMEAA 55 (104)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 499999999998543
No 90
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=48.83 E-value=7.2 Score=29.56 Aligned_cols=15 Identities=40% Similarity=1.099 Sum_probs=12.8
Q ss_pred cccHHHHHHHHHHhh
Q 045854 40 KFCYNCIVHWTKVVA 54 (272)
Q Consensus 40 ~FC~~Ci~~w~~~~~ 54 (272)
.||..|+..|....+
T Consensus 42 GFCRNCLskWy~~aA 56 (105)
T 2o35_A 42 GFCRNCLSNWYREAA 56 (105)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 499999999998644
No 91
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=46.07 E-value=6.2 Score=30.81 Aligned_cols=31 Identities=19% Similarity=0.412 Sum_probs=21.8
Q ss_pred CCcccccccCCCCc---eeecCCCCcccHHHHHH
Q 045854 18 PNPCPICLGPVVED---SYLDKCFHKFCYNCIVH 48 (272)
Q Consensus 18 ~~~CpICl~~~~~p---~~l~~CgH~FC~~Ci~~ 48 (272)
...|.+|...|.-- ---..||+.||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 45799999988632 11237999999998643
No 92
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=45.97 E-value=8.5 Score=27.60 Aligned_cols=32 Identities=22% Similarity=0.497 Sum_probs=22.2
Q ss_pred CCCcccccccCCCCce---eecCCCCcccHHHHHH
Q 045854 17 NPNPCPICLGPVVEDS---YLDKCFHKFCYNCIVH 48 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~---~l~~CgH~FC~~Ci~~ 48 (272)
+...|.+|...|.--. --..||..||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 3457999999886321 1237999999998643
No 93
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=45.24 E-value=2.3 Score=29.09 Aligned_cols=34 Identities=26% Similarity=0.782 Sum_probs=21.8
Q ss_pred CCcccccccCCCCc-----eeecC--CCCcccHHHHHHHHH
Q 045854 18 PNPCPICLGPVVED-----SYLDK--CFHKFCYNCIVHWTK 51 (272)
Q Consensus 18 ~~~CpICl~~~~~p-----~~l~~--CgH~FC~~Ci~~w~~ 51 (272)
...||-|...++.. ++-.. |++.||..|...|..
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 35799888877652 12212 777788877777743
No 94
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=45.23 E-value=9 Score=27.60 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=22.4
Q ss_pred CCCcccccccCCCCce---eecCCCCcccHHHHHH
Q 045854 17 NPNPCPICLGPVVEDS---YLDKCFHKFCYNCIVH 48 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~---~l~~CgH~FC~~Ci~~ 48 (272)
+...|.+|...|.--. --..||..||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 4567999999886321 1237999999998643
No 95
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=45.15 E-value=5.7 Score=26.93 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=32.3
Q ss_pred CCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
.......|.+|.+.- +-+.-..|...|+..|+..-+. ........||.|...
T Consensus 5 ~d~~~~~C~vC~~~g-~ll~Cd~C~~~fH~~Cl~ppl~------~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 5 SDHHMEFCRVCKDGG-ELLCCDTCPSSYHIHCLNPPLP------EIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCSSCTTTCCCS-SCBCCSSSCCCBCSSSSSSCCS------SCCSSCCCCTTTTTT
T ss_pred ccCCCCcCCCCCCCC-CEEEcCCCCHHHcccccCCCcC------cCCCCccCChhhcCc
Confidence 344567899998632 2223346777888888865322 122345789999764
No 96
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=44.41 E-value=4.9 Score=33.15 Aligned_cols=49 Identities=22% Similarity=0.388 Sum_probs=31.6
Q ss_pred CCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 17 NPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
.+..|.+|.+.- +-..-..|...|+..|+..-+. ....+...||.|+..
T Consensus 3 ~~~~C~~C~~~g-~ll~Cd~C~~~~H~~C~~p~l~------~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNGG-ELLCCEKCPKVFHLSCHVPTLT------NFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCCS-SCEECSSSSCEECTTTSSSCCS------SCCSSCCCCTTTSCS
T ss_pred CCCccccCCCCC-eeeecCCCCcccCccccCCCCC------CCCCCCEECccccCc
Confidence 356799998652 2233446877889999765433 122345789999864
No 97
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=42.81 E-value=1.8 Score=31.25 Aligned_cols=14 Identities=29% Similarity=0.788 Sum_probs=12.6
Q ss_pred CCCCcccHHHHHHH
Q 045854 36 KCFHKFCYNCIVHW 49 (272)
Q Consensus 36 ~CgH~FC~~Ci~~w 49 (272)
.|++.||+.|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 58999999999887
No 98
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=42.52 E-value=16 Score=25.55 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=24.9
Q ss_pred CCCCCCCcccccccCCCCceeecCC-CCcccHHHHHHH
Q 045854 13 CSSENPNPCPICLGPVVEDSYLDKC-FHKFCYNCIVHW 49 (272)
Q Consensus 13 ~~~~~~~~CpICl~~~~~p~~l~~C-gH~FC~~Ci~~w 49 (272)
+..++..-|.||.+.-. ..-..| +-.||..|..+.
T Consensus 3 ~~~ee~pWC~ICneDAt--lrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 3 SGSSGLPWCCICNEDAT--LRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp SSCCCCSSCTTTCSCCC--EEETTTTSEEECSSHHHHH
T ss_pred CcCcCCCeeEEeCCCCe--EEecCCCCceehHHHHHHH
Confidence 34566778999998733 334467 668999997775
No 99
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.47 E-value=9.7 Score=27.39 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=20.9
Q ss_pred CCCcccccccCCCCce---eecCCCCcccHHHH
Q 045854 17 NPNPCPICLGPVVEDS---YLDKCFHKFCYNCI 46 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~---~l~~CgH~FC~~Ci 46 (272)
+...|.+|...|.--. --..||..||..|.
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 3457999999885321 11269999999884
No 100
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=41.65 E-value=32 Score=24.19 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=33.0
Q ss_pred CCCCCCCcccccccCCC-C--ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 13 CSSENPNPCPICLGPVV-E--DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 13 ~~~~~~~~CpICl~~~~-~--p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
....+...| ||..+.. . -+.-..|..-|+..|+.--... ........||.|+..
T Consensus 7 ~~~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~-----~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 7 GMALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEEN-----AVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHH-----HTTCSBBCCTTTTTT
T ss_pred CccCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCccccc-----ccCCCeEECCCcccc
Confidence 444556677 9998763 2 2233468778999998532221 011246889999864
No 101
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=41.39 E-value=4.2 Score=34.31 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=32.2
Q ss_pred CCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
.....|.+|...- +-+.-..|...|+..|+..-+. ....+...||.|+..
T Consensus 5 ~~~~~C~~C~~~g-~ll~Cd~C~~~~H~~Cl~p~l~------~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQNGG-DLLCCEKCPKVFHLTCHVPTLL------SFPSGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCCCE-EEEECSSSSCEECTTTSSSCCS------SCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCC-ceEEcCCCCCccCCccCCCCCC------CCCCCCEEeCceeCc
Confidence 3456799998642 2223346787899999865433 122345789999864
No 102
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=41.36 E-value=11 Score=26.42 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=20.7
Q ss_pred CcccccccCCCCc---eeecCCCCcccHHHHH
Q 045854 19 NPCPICLGPVVED---SYLDKCFHKFCYNCIV 47 (272)
Q Consensus 19 ~~CpICl~~~~~p---~~l~~CgH~FC~~Ci~ 47 (272)
..|.+|...|.-- ---..||..||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 4799999887632 1123699999998853
No 103
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.35 E-value=28 Score=24.04 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=27.6
Q ss_pred CCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
.......|+.|...+... .+..-+..|+..| +.|-.|+..+.
T Consensus 11 ~~~~~~~C~~C~~~I~~~-~~~a~~~~~H~~C------------------F~C~~C~~~L~ 52 (79)
T 1x62_A 11 NAQKLPMCDKCGTGIVGV-FVKLRDRHRHPEC------------------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCCCCSSSCCCCCSS-CEECSSCEECTTT------------------TSCSSSCCCHH
T ss_pred CCCCCCccccCCCCccCc-EEEECcceeCcCc------------------CeeCCCCCCCC
Confidence 344567899999988765 3334455555443 57888887764
No 104
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=41.21 E-value=14 Score=26.92 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=22.2
Q ss_pred CCCcccccccCCCCc---eeecCCCCcccHHHHHH
Q 045854 17 NPNPCPICLGPVVED---SYLDKCFHKFCYNCIVH 48 (272)
Q Consensus 17 ~~~~CpICl~~~~~p---~~l~~CgH~FC~~Ci~~ 48 (272)
+...|.+|...|.-- ---..||..||..|...
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 345799999887531 12237999999998644
No 105
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=40.73 E-value=7.8 Score=28.86 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=28.9
Q ss_pred CCCCcccccccCCCCceee--cCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCc
Q 045854 16 ENPNPCPICLGPVVEDSYL--DKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKT 71 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l--~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~ 71 (272)
.+...| ||.........+ ..|.-.|+..|+..-.. .......||.|+.
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~-------~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQ-------HIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTT-------SCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCcc-------CCCCCEECCCCcC
Confidence 345678 898765443232 36777888888743111 1123578999974
No 106
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=40.25 E-value=16 Score=24.89 Aligned_cols=41 Identities=29% Similarity=0.621 Sum_probs=28.5
Q ss_pred CcccccccCCCCce--eecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCC
Q 045854 19 NPCPICLGPVVEDS--YLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLC 69 (272)
Q Consensus 19 ~~CpICl~~~~~p~--~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlC 69 (272)
..|-.|+..+.+.. .-..|++.||..|=.=... ..-.||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe----------~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHD----------SLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTT----------TSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHh----------hccCCcCC
Confidence 35999999886543 2447999999999533222 24678887
No 107
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=39.70 E-value=14 Score=28.02 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=33.4
Q ss_pred CCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 18 PNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 18 ~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
-..|..|...+........=|..+|..|..+.. ..+|..|..+|.
T Consensus 30 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~------------~~~C~~C~~~I~ 74 (126)
T 2xqn_T 30 HFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH------------AVVCQGCHNAID 74 (126)
T ss_dssp GSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS------------CCBCTTTCSBCC
T ss_pred CCCcCCCCCCCCcCEEEeECCEEechHHhCcCc------------CccCcccCCcCC
Confidence 367888988887654444567789999986642 478999998876
No 108
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=38.87 E-value=6.4 Score=36.34 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=0.0
Q ss_pred CCcccccccCCCCc---eeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 18 PNPCPICLGPVVED---SYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 18 ~~~CpICl~~~~~p---~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
...|.+|...|.-- ---..||+.||..|........ .........|-.|-..
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~---~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLK---YLKDRMAKVCDGCFGE 429 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCC---CCCCCcCEecHHHHHH
Confidence 46799999887532 1122699999999987654321 0111234667777543
No 109
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=38.04 E-value=9.5 Score=32.32 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=21.4
Q ss_pred CCCcccccccCCCCc---eeecCCCCcccHHHHH
Q 045854 17 NPNPCPICLGPVVED---SYLDKCFHKFCYNCIV 47 (272)
Q Consensus 17 ~~~~CpICl~~~~~p---~~l~~CgH~FC~~Ci~ 47 (272)
+...|.+|...|.-- ---..||+.||..|..
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 346899999887532 1123689999988854
No 110
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=37.53 E-value=5.9 Score=27.75 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=32.3
Q ss_pred CCCCcccccccCCCCc--eeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 045854 16 ENPNPCPICLGPVVED--SYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTEN 73 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p--~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~ 73 (272)
.+...|+||...-... +.-..|...|+..|+..-.. ........||.|...+
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~------~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAA------PPEEMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSC------CCSSSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCcc------CCCCCCEEChhccCch
Confidence 3456799998765432 22346777899999854221 1112457899997653
No 111
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=36.33 E-value=7.8 Score=28.00 Aligned_cols=29 Identities=24% Similarity=0.774 Sum_probs=19.3
Q ss_pred ccccccCCCC-----ceeecCCCCcccHHHHHHH
Q 045854 21 CPICLGPVVE-----DSYLDKCFHKFCYNCIVHW 49 (272)
Q Consensus 21 CpICl~~~~~-----p~~l~~CgH~FC~~Ci~~w 49 (272)
||-|...+.. ++.-..|++.||+.|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 8877654421 2233249999999998887
No 112
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=36.11 E-value=33 Score=27.42 Aligned_cols=56 Identities=18% Similarity=0.303 Sum_probs=34.0
Q ss_pred CCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcc-cCCCCCCCCCCCCc
Q 045854 15 SENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKH-SSLLSSVKCPLCKT 71 (272)
Q Consensus 15 ~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~-~~~~~~~~CPlCr~ 71 (272)
......|.+|.+--. -.--..|-..||..||..-+.....+. ........||.|..
T Consensus 60 Dg~~d~C~vC~~GG~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCCc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 344678999987443 223346888999999987542110000 01234678999974
No 113
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=36.07 E-value=40 Score=23.32 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=19.5
Q ss_pred CCCCcccccccCCCCceeecCCCCcccH
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHKFCY 43 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~FC~ 43 (272)
.....|..|...+.-..+.=.||..||.
T Consensus 13 ~~~~rC~~C~kkvgl~~f~CrCg~~FC~ 40 (64)
T 1wg2_A 13 RPNNRCFSCNKKVGVMGFKCKCGSTFCG 40 (64)
T ss_dssp CCSCSCTTTCCCCTTSCEECTTSCEECS
T ss_pred CcCCcChhhCCcccccCeEeecCCEecc
Confidence 3467899999865543233369999996
No 114
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=35.38 E-value=12 Score=29.11 Aligned_cols=33 Identities=18% Similarity=0.422 Sum_probs=21.8
Q ss_pred CCCcccccccCCCCc---eeecCCCCcccHHHHHHH
Q 045854 17 NPNPCPICLGPVVED---SYLDKCFHKFCYNCIVHW 49 (272)
Q Consensus 17 ~~~~CpICl~~~~~p---~~l~~CgH~FC~~Ci~~w 49 (272)
+...|..|...|.-. ---..||..||..|....
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~ 53 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQV 53 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCC
Confidence 345899999988642 112379999999996443
No 115
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=35.31 E-value=18 Score=33.79 Aligned_cols=55 Identities=20% Similarity=0.420 Sum_probs=33.4
Q ss_pred CCCcccccccCCCCceeec--CCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 17 NPNPCPICLGPVVEDSYLD--KCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~--~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
....|.+|-+--. -+.-. .|...||..||...+.....+.-.......|=+|.-.
T Consensus 92 ~~~yCr~C~~Gg~-l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 92 YQSYCSICCSGET-LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SBCSCTTTCCCSS-CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CcccceEcCCCCe-EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 4567999887542 12223 6888999999998762211111111246789999743
No 116
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=35.08 E-value=11 Score=28.28 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=25.9
Q ss_pred CCCCCCcccccccCCCC--ceeecCCCCcccHHHHHHHH
Q 045854 14 SSENPNPCPICLGPVVE--DSYLDKCFHKFCYNCIVHWT 50 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~--p~~l~~CgH~FC~~Ci~~w~ 50 (272)
+..++..|.||.+.-.. -+.=..|+..|+..|+....
T Consensus 3 ~~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 3 SGSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC
T ss_pred CCCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc
Confidence 44567889999875432 23445788999999987643
No 117
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.34 E-value=20 Score=30.55 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=22.2
Q ss_pred CCCcccccccCCCCc---eeecCCCCcccHHHHHH
Q 045854 17 NPNPCPICLGPVVED---SYLDKCFHKFCYNCIVH 48 (272)
Q Consensus 17 ~~~~CpICl~~~~~p---~~l~~CgH~FC~~Ci~~ 48 (272)
+...|.+|...|.-- ---..||..||..|...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 346899999887632 11237999999988643
No 118
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=33.12 E-value=19 Score=23.07 Aligned_cols=46 Identities=20% Similarity=0.393 Sum_probs=28.4
Q ss_pred cccccccCCC--CceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCc
Q 045854 20 PCPICLGPVV--EDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKT 71 (272)
Q Consensus 20 ~CpICl~~~~--~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~ 71 (272)
.|.||...-. .-+.-..|...|+..|+..=+. ....+...||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~------~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALY------EVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCC------SCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcC------CCCCCcEECcCccc
Confidence 4788876432 2223346778899999865222 12234578999975
No 119
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=32.20 E-value=60 Score=23.08 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=18.9
Q ss_pred CCCcccccccCCCCceeecCCCCcccH
Q 045854 17 NPNPCPICLGPVVEDSYLDKCFHKFCY 43 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~~CgH~FC~ 43 (272)
....|..|...+.-..+.=.|+..||.
T Consensus 24 ~~~RC~~C~kkvgL~~f~CrCg~~FCs 50 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKCRCGSTFCG 50 (74)
T ss_dssp CCCBCSSSCCBCTTTCEECTTSCEECT
T ss_pred cCccchhhcCcccccceEeccCCEecc
Confidence 457899998765543333369999997
No 120
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=31.89 E-value=1.3 Score=33.58 Aligned_cols=43 Identities=23% Similarity=0.423 Sum_probs=28.4
Q ss_pred CCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccce
Q 045854 18 PNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVSI 76 (272)
Q Consensus 18 ~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~~ 76 (272)
...||+|..++.-. =++.+|..|-..+.+ ...||.|.+++..+
T Consensus 32 ~~~CP~Cq~eL~~~-----g~~~hC~~C~~~f~~-----------~a~CPdC~q~LevL 74 (101)
T 2jne_A 32 ELHCPQCQHVLDQD-----NGHARCRSCGEFIEM-----------KALCPDCHQPLQVL 74 (101)
T ss_dssp CCBCSSSCSBEEEE-----TTEEEETTTCCEEEE-----------EEECTTTCSBCEEE
T ss_pred cccCccCCCcceec-----CCEEECccccchhhc-----------cccCcchhhHHHHH
Confidence 37899999876521 123347777655433 47899999886543
No 121
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=31.15 E-value=27 Score=28.58 Aligned_cols=54 Identities=20% Similarity=0.407 Sum_probs=32.5
Q ss_pred CCCcccccccCCCCceeec--CCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCc
Q 045854 17 NPNPCPICLGPVVEDSYLD--KCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKT 71 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~--~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~ 71 (272)
....|.||-+--. -+.-. .|...||..||...+...+.+.-.......|=+|.-
T Consensus 78 ~~~yC~wC~~Gg~-l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 78 YQSYCTICCGGRE-VLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SBSSCTTTSCCSE-EEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CcceeeEecCCCe-EEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 3557999987431 11112 577899999999876532222112234578888863
No 122
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.88 E-value=56 Score=22.71 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=24.5
Q ss_pred CCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 045854 15 SENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVS 75 (272)
Q Consensus 15 ~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~ 75 (272)
......|+.|...+.....+..-+..|+..| ++|-.|+..+..
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~C------------------F~C~~C~~~L~~ 54 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSC------------------FRCHTCEATLWP 54 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCCBTTBCCBTTT------------------CBCSSSCCBCCT
T ss_pred CCCCCCCcccCCCcccceEEEECCCeeCCCc------------------CEEcCCCCCcCC
Confidence 3455789999998853222222233333333 477788776644
No 123
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=30.21 E-value=14 Score=26.66 Aligned_cols=44 Identities=27% Similarity=0.576 Sum_probs=28.5
Q ss_pred CcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 19 NPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 19 ~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
+.|..|...+........=|..||..|..+. -..+|..|..+|.
T Consensus 34 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~------------~~~~C~~C~~~I~ 77 (101)
T 2cup_A 34 FRCAKCLHPLANETFVAKDNKILCNKCTTRE------------DSPKCKGCFKAIV 77 (101)
T ss_dssp CCCSSSCCCTTSSCCEEETTEEECHHHHTTC------------CCCBCSSSCCBCC
T ss_pred CcccccCCCCCcCeeECcCCEEEChhHhhhh------------cCCccccCCCccc
Confidence 5677787777654333334667888886432 2468999988765
No 124
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=29.97 E-value=42 Score=25.57 Aligned_cols=39 Identities=21% Similarity=0.404 Sum_probs=25.9
Q ss_pred CCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 18 PNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 18 ~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
...|+-|...+.....+..-+..|+..| ++|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C------------------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC------------------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT------------------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc------------------cCcCcCCCccc
Confidence 4689999998876543433454454443 57888888764
No 125
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.78 E-value=60 Score=22.80 Aligned_cols=42 Identities=17% Similarity=0.244 Sum_probs=27.0
Q ss_pred CCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
.......|..|...+.... +..-+..|+..| +.|-.|+..+.
T Consensus 21 ~~~~~~~C~~C~~~I~~~~-~~a~~~~~H~~C------------------F~C~~C~~~L~ 62 (89)
T 1x64_A 21 SAQRMPLCDKCGSGIVGAV-VKARDKYRHPEC------------------FVCADCNLNLK 62 (89)
T ss_dssp CCCSCCBCTTTCCBCCSCC-EESSSCEECTTT------------------CCCSSSCCCTT
T ss_pred CCCcCCCcccCCCEecccE-EEECCceECccC------------------CEecCCCCCCC
Confidence 3345578999999887643 333454555443 57888887764
No 126
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.25 E-value=23 Score=28.68 Aligned_cols=46 Identities=22% Similarity=0.387 Sum_probs=29.1
Q ss_pred CCCcccccccCCC---C-ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCc
Q 045854 17 NPNPCPICLGPVV---E-DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKT 71 (272)
Q Consensus 17 ~~~~CpICl~~~~---~-p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~ 71 (272)
....|.+|..+|. + ...-..|.|.+|..|-. |. +......|-+|..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~--------~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AH--------PEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CC--------SSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-cc--------CCCCcEeeHHHHH
Confidence 4678999999763 1 22334688888988862 21 1223566777754
No 127
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=27.93 E-value=39 Score=26.52 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=32.7
Q ss_pred CCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhh-cccCCCCCCCCCCCCc
Q 045854 15 SENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVAS-KHSSLLSSVKCPLCKT 71 (272)
Q Consensus 15 ~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~-k~~~~~~~~~CPlCr~ 71 (272)
......|.+|.+--.-. --..|-..||..||.+-+..... +-........|+.|..
T Consensus 54 Dg~~~~C~vC~dGG~Ll-cCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGNLI-CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCCSEEE-ECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCCCeeE-ecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 33456799998653211 22468889999999875211000 0001234689999974
No 128
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=27.30 E-value=22 Score=26.11 Aligned_cols=51 Identities=18% Similarity=0.423 Sum_probs=33.0
Q ss_pred CCCCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCc
Q 045854 14 SSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKT 71 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~ 71 (272)
.......|.+|...- +-+.-..|.-.|+..|+..-+. ........||.|..
T Consensus 21 ~d~n~~~C~vC~~~g-~LL~CD~C~~~fH~~Cl~PpL~------~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 21 LDDSATICRVCQKPG-DLVMCNQCEFCFHLDCHLPALQ------DVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSSSCCSSSCSSS-CCEECTTSSCEECTTSSSTTCC------CCCSSSCCCCSCCC
T ss_pred cCCCCCcCcCcCCCC-CEEECCCCCCceecccCCCCCC------CCcCCCcCCccccC
Confidence 345567899999753 2333346766888888865332 22335678999975
No 129
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.56 E-value=72 Score=21.15 Aligned_cols=33 Identities=15% Similarity=0.374 Sum_probs=22.4
Q ss_pred CcccccccCCCCceeecCCCCcccHHHHHHHHH
Q 045854 19 NPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTK 51 (272)
Q Consensus 19 ~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~ 51 (272)
+.|..|...+........=+..||..|..+.+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 567888877765434334567888888877655
No 130
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=25.27 E-value=17 Score=30.15 Aligned_cols=48 Identities=19% Similarity=0.378 Sum_probs=29.6
Q ss_pred CCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 18 PNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 18 ~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
...|.+|...-. -..-..|...|+..|+..-+. ....+...||.|+..
T Consensus 2 ~~~C~~C~~~g~-ll~Cd~C~~~~H~~Cl~p~l~------~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGD-LVMCNQCEFCFHLDCHLPALQ------DVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSS-CCCCTTTCCBCCSTTSTTCCS------SCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCCc-eeECCCCCchhccccCCCCcc------cCCCCCCCCcCccCC
Confidence 356999986532 222335767888888865322 122345789999864
No 131
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=25.21 E-value=24 Score=27.81 Aligned_cols=50 Identities=18% Similarity=0.432 Sum_probs=29.0
Q ss_pred CCCCcccccccCCC---C-ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCc
Q 045854 16 ENPNPCPICLGPVV---E-DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKT 71 (272)
Q Consensus 16 ~~~~~CpICl~~~~---~-p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~ 71 (272)
.....|.+|..++. + ...-..|.|.+|..|-..-.. ........|-+|..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~------~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSN------NRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCC------SSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCC------CCCccceechhhHH
Confidence 35678999999883 1 122336888888877432100 11223456777764
No 132
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.18 E-value=42 Score=22.78 Aligned_cols=41 Identities=20% Similarity=0.368 Sum_probs=25.3
Q ss_pred CCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
.....|+.|...+.....+..-+..++..| +.|..|+.++.
T Consensus 7 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~C------------------F~C~~C~~~L~ 47 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAEKVSSLGKDWHKFC------------------LKCERCSKTLT 47 (76)
T ss_dssp CCCCBCTTTCCBCCTTTEEEETTEEEETTT------------------CBCSSSCCBCC
T ss_pred CCCCCCcCCCCEeECCeEEEECCeEeeCCC------------------CCCCCCCCccC
Confidence 345689999998873223333444444433 57888887764
No 133
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.32 E-value=8.8 Score=28.30 Aligned_cols=52 Identities=15% Similarity=0.306 Sum_probs=31.0
Q ss_pred CCCCCCcccccccCCCC--ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCc
Q 045854 14 SSENPNPCPICLGPVVE--DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKT 71 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~--p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~ 71 (272)
...+...|.||...-.. -+.-..|...|+..|+..-+. ........||.|..
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~------~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLP------EIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCS------SCCSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcc------cCCCCCcCCccCcC
Confidence 34456689999975431 223346777788888754222 11224567999965
No 134
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=23.76 E-value=55 Score=24.85 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=16.5
Q ss_pred eecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 33 YLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 33 ~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
.-..||+.|+. ..+....||.|+..
T Consensus 69 ~C~~CG~~F~~---------------~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 69 QCRKCGFVFKA---------------EINIPSRCPKCKSE 93 (105)
T ss_dssp BBTTTCCBCCC---------------CSSCCSSCSSSCCC
T ss_pred ChhhCcCeecc---------------cCCCCCCCcCCCCC
Confidence 44479999821 11235789999975
No 135
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=23.57 E-value=6.8 Score=35.43 Aligned_cols=47 Identities=23% Similarity=0.550 Sum_probs=33.0
Q ss_pred CCCCcccccccCCCCceeec---CCC--CcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 16 ENPNPCPICLGPVVEDSYLD---KCF--HKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~---~Cg--H~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
.....||+|-......+... .=| +.+|..|-.+|.. ...+||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~----------~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY----------VRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC----------CTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee----------cCcCCcCCCCC
Confidence 56789999998776443221 234 3679999999965 36799999875
No 136
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=23.53 E-value=58 Score=22.60 Aligned_cols=49 Identities=22% Similarity=0.545 Sum_probs=29.7
Q ss_pred CCCCCcccccccCCCCcee-ecC--CC-CcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcc
Q 045854 15 SENPNPCPICLGPVVEDSY-LDK--CF-HKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTE 72 (272)
Q Consensus 15 ~~~~~~CpICl~~~~~p~~-l~~--Cg-H~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~ 72 (272)
..+...| ||.......++ -.. |. .-|+..|+. +. ........||.|+..
T Consensus 13 ~~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~------~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 13 PNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LT------TKPRGKWFCPRCSQE 65 (71)
T ss_dssp TTSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CS------SCCSSCCCCTTTSSC
T ss_pred CCCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cC------cCCCCCEECCCCCcc
Confidence 3456678 89986543311 224 55 579999986 22 112246789999764
No 137
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.45 E-value=70 Score=22.53 Aligned_cols=40 Identities=20% Similarity=0.415 Sum_probs=24.7
Q ss_pred CCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 17 NPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 17 ~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
....|+-|...+.....+..-+..|+..| +.|-.|..++.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~C------------------F~C~~C~~~L~ 53 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISC------------------FRCSYCNNKLS 53 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTT------------------CBCTTTCCBCC
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCC------------------CeeCCCCCCCC
Confidence 35689999998865323334454554433 46777776654
No 138
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=23.24 E-value=38 Score=34.36 Aligned_cols=55 Identities=18% Similarity=0.494 Sum_probs=35.1
Q ss_pred CCCCCcccccccCCCCc---------eeecCCCCcc--------------------cHHHHHHHHHHhhhcccCC-CCCC
Q 045854 15 SENPNPCPICLGPVVED---------SYLDKCFHKF--------------------CYNCIVHWTKVVASKHSSL-LSSV 64 (272)
Q Consensus 15 ~~~~~~CpICl~~~~~p---------~~l~~CgH~F--------------------C~~Ci~~w~~~~~~k~~~~-~~~~ 64 (272)
..+...|+-|+..+.+| +.-+.||..| |..|-.++-.-.. -+. -+..
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~d---RRfhAqp~ 179 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLN---RRYHAEPT 179 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSS---TTTTCTTC
T ss_pred CCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCC---CCCcCCCC
Confidence 34567899999888764 1223567665 9999999853100 001 1346
Q ss_pred CCCCCCcc
Q 045854 65 KCPLCKTE 72 (272)
Q Consensus 65 ~CPlCr~~ 72 (272)
.||.|.-.
T Consensus 180 aC~~CGP~ 187 (772)
T 4g9i_A 180 ACPVCGPS 187 (772)
T ss_dssp CCTTTSCC
T ss_pred CCccCCce
Confidence 89999654
No 139
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=23.10 E-value=51 Score=22.48 Aligned_cols=34 Identities=32% Similarity=0.563 Sum_probs=20.8
Q ss_pred CCCCCCcccccccCCCCc---eeec-CCCCcccHHHHH
Q 045854 14 SSENPNPCPICLGPVVED---SYLD-KCFHKFCYNCIV 47 (272)
Q Consensus 14 ~~~~~~~CpICl~~~~~p---~~l~-~CgH~FC~~Ci~ 47 (272)
+.+....|++|..+..+- +.-. .|.--|+..|+.
T Consensus 4 ~~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 4 SSDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp -----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 355667899999987532 2233 577789999983
No 140
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.34 E-value=95 Score=21.41 Aligned_cols=28 Identities=29% Similarity=0.717 Sum_probs=19.7
Q ss_pred CCCCcccccccCCCCceeecCCCCcccH
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHKFCY 43 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~FC~ 43 (272)
.....|..|...+.-+.+.=.||..||.
T Consensus 13 ~~~~rC~~C~kkvgl~~f~CrCg~~FC~ 40 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLTGFMCRCGTTFCG 40 (64)
T ss_dssp SSCCCCTTTCCCCCTTCEECSSSCEECT
T ss_pred CcCCcChhhCCccCccCEEeecCCEecc
Confidence 3467899999865543233369999997
No 141
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.61 E-value=35 Score=25.70 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=31.4
Q ss_pred CcccccccCCCC--ceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCccccc
Q 045854 19 NPCPICLGPVVE--DSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENVS 75 (272)
Q Consensus 19 ~~CpICl~~~~~--p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~~ 75 (272)
+.|..|...+.+ ......=|..||..|..+.+. ....|..|..+|..
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~----------~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG----------NSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHC----------CCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcC----------CCCccccCCCCcCc
Confidence 468888888852 223334566789999877543 12389999988764
No 142
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=21.50 E-value=38 Score=22.58 Aligned_cols=52 Identities=21% Similarity=0.406 Sum_probs=30.7
Q ss_pred CCCCCcccccccCCCC-c--eeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCc
Q 045854 15 SENPNPCPICLGPVVE-D--SYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKT 71 (272)
Q Consensus 15 ~~~~~~CpICl~~~~~-p--~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~ 71 (272)
.++...|+||..+..+ . +.-..|..-|+..|+.--... ........||.|+.
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~-----~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPAR-----AEHIKQYKCPSCSN 57 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTG-----GGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhH-----hcCCCcEECCCCcC
Confidence 4566789999987642 2 223366667888887432110 01124578998865
No 143
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.23 E-value=75 Score=21.98 Aligned_cols=41 Identities=20% Similarity=0.426 Sum_probs=24.1
Q ss_pred CCCCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 16 ENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 16 ~~~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
.....|+-|...+.....+..-+..++..| +.|-.|+.++.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~C------------------F~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSC------------------FKCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTT------------------CBCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCeEEEECCccccccc------------------CCcCcCCCCcC
Confidence 346789999998863222222333333332 57888887654
No 144
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=20.23 E-value=87 Score=24.80 Aligned_cols=44 Identities=18% Similarity=0.383 Sum_probs=31.9
Q ss_pred CCcccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcccCCCCCCCCCCCCcccc
Q 045854 18 PNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLCKTENV 74 (272)
Q Consensus 18 ~~~CpICl~~~~~p~~l~~CgH~FC~~Ci~~w~~~~~~k~~~~~~~~~CPlCr~~~~ 74 (272)
-+.|..|...+....+. .=|..||..|..+.. ...|..|...|.
T Consensus 33 CF~C~~C~~~L~~~~f~-~~g~~yC~~~y~~~f------------~~~C~~C~~~I~ 76 (169)
T 2rgt_A 33 CLKCSDCHVPLAERCFS-RGESVYCKDDFFKRF------------GTKCAACQLGIP 76 (169)
T ss_dssp TSBCTTTCCBCCSCCEE-SSSCEECHHHHHHHH------------SCBCTTTCCBCC
T ss_pred cCccCCCCCcCCCCCcc-cCCeeeecccccccc------------cccccccccccC
Confidence 46788888888765443 457789999987654 368999988764
Done!