Query 045855
Match_columns 117
No_of_seqs 40 out of 42
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 06:12:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045855.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045855hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 99.3 7.7E-12 1.7E-16 93.1 6.1 44 55-103 73-116 (118)
2 PF05617 Prolamin_like: Prolam 99.2 5.4E-12 1.2E-16 81.5 2.2 41 54-94 26-70 (70)
3 PF07172 GRP: Glycine rich pro 95.8 0.0056 1.2E-07 43.5 2.0 28 1-29 1-28 (95)
4 PF03058 Sar8_2: Sar8.2 family 71.2 2.9 6.2E-05 30.6 1.7 27 1-28 1-28 (93)
5 PF09585 Lin0512_fam: Conserve 54.3 11 0.00024 28.1 2.2 30 55-84 17-47 (113)
6 PF07064 RIC1: RIC1; InterPro 34.5 23 0.00051 28.8 1.4 21 63-84 163-183 (258)
7 PF15284 PAGK: Phage-encoded v 33.7 40 0.00087 23.0 2.2 24 3-26 4-27 (61)
8 cd07442 CRD_SFRP4 Cysteine-ric 25.4 35 0.00075 25.5 0.9 27 58-85 76-102 (127)
9 cd07888 CRD_corin_2 One of two 23.5 42 0.00091 24.6 1.0 27 58-85 74-100 (122)
10 cd08804 Death_ank2 Death domai 21.7 70 0.0015 21.7 1.8 26 65-91 12-37 (84)
11 cd04660 nsLTP_like nsLTP_like: 21.4 45 0.00098 21.6 0.8 16 56-71 24-39 (73)
12 cd07456 CRD_FZ5_like Cysteine- 20.6 53 0.0011 24.0 1.0 28 58-86 72-99 (120)
13 cd07453 CRD_crescent Cysteine- 20.2 51 0.0011 24.9 0.9 25 60-85 74-98 (135)
No 1
>PLN00213 predicted protein; Provisional
Probab=99.28 E-value=7.7e-12 Score=93.11 Aligned_cols=44 Identities=27% Similarity=0.582 Sum_probs=38.9
Q ss_pred ccCchhhHHHHHhhhcchhhhhhcCCCChhhhhhhhhccccCCCCCCCc
Q 045855 55 DIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCDASFAPSPGG 103 (117)
Q Consensus 55 ~IG~~CC~AI~~I~~~CWP~M~~slGfT~eE~~iLrGyCd~~~~pSp~~ 103 (117)
.||++||+|+...+ +|||+| +..+|.++ +||+.|.+.+..+++.
T Consensus 73 ~Ig~aCCKAf~~~d-nCwP~~-P~~P~fPp---~LK~~Cs~i~~~~~~~ 116 (118)
T PLN00213 73 NLGPACCKAFLDAD-NCIPKI-PFIPFFPP---MLKEQCSRVAGATPPI 116 (118)
T ss_pred ccchHHHHHHHhhh-ccccCC-cCCCccch---HHHHHHhcccCCCCCC
Confidence 79999999999955 999996 99999998 9999999997666554
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.21 E-value=5.4e-12 Score=81.52 Aligned_cols=41 Identities=29% Similarity=0.642 Sum_probs=37.4
Q ss_pred eccCchhhHHHHHhhhcchhhhhhcCCCChhhhh----hhhhccc
Q 045855 54 VDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGN----MLRGYCD 94 (117)
Q Consensus 54 t~IG~~CC~AI~~I~~~CWP~M~~slGfT~eE~~----iLrGyCd 94 (117)
+.||++||++|+.++++|||+|+..+++++++.+ .|+++|+
T Consensus 26 ~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~~~r~~l~~~C~ 70 (70)
T PF05617_consen 26 KNIGPECCKAINKMGKDCHPALFKMFPFTPFFKPLLRDLLWNHCS 70 (70)
T ss_pred CCCChHHHHHHHHHhHhHHHHHHHHccCCCCccchhHHHHHhhcC
Confidence 7899999999999999999998888888888777 9999996
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=95.84 E-value=0.0056 Score=43.48 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=20.4
Q ss_pred CchhHHHHHHHHHHHHHhhhhcccccCCC
Q 045855 1 MALKHVFFILALTCLIMANIANATSKNDP 29 (117)
Q Consensus 1 MA~~~~fl~~~lt~~i~a~~a~~~~~r~~ 29 (117)
||||. ||||+|.|.+.-+||+.+++|+.
T Consensus 1 MaSK~-~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKA-FLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhH-HHHHHHHHHHHHHHHhhhhhHHh
Confidence 99887 66666666666677788888775
No 4
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=71.17 E-value=2.9 Score=30.59 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=15.8
Q ss_pred Cch-hHHHHHHHHHHHHHhhhhcccccCC
Q 045855 1 MAL-KHVFFILALTCLIMANIANATSKND 28 (117)
Q Consensus 1 MA~-~~~fl~~~lt~~i~a~~a~~~~~r~ 28 (117)
|+| .++|+.++|+++++ .||+-+.+|+
T Consensus 1 M~~Ktnlfl~lSLailLm-IISSqv~ARE 28 (93)
T PF03058_consen 1 MVSKTNLFLCLSLAILLM-IISSQVDARE 28 (93)
T ss_pred CcchhhhHHHHHHHHHHH-HHhhHHHHHH
Confidence 888 56777777733333 3455555554
No 5
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=54.29 E-value=11 Score=28.09 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=24.5
Q ss_pred ccCchhhHHHH-HhhhcchhhhhhcCCCChh
Q 045855 55 DIGSDCYRAID-IITYNCWPAMLTFLGFTAE 84 (117)
Q Consensus 55 ~IG~~CC~AI~-~I~~~CWP~M~~slGfT~e 84 (117)
+.-.++++|++ .|.|+|-|.|+..+|+..+
T Consensus 17 D~TkAA~RAv~DAI~~nslp~l~~~~~~~~~ 47 (113)
T PF09585_consen 17 DYTKAAVRAVRDAISHNSLPGLFEILGLDLD 47 (113)
T ss_pred cHHHHHHHHHHHHHhhcchHHHHHHcCCChH
Confidence 34467888884 7999999999999999654
No 6
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=34.45 E-value=23 Score=28.75 Aligned_cols=21 Identities=19% Similarity=0.597 Sum_probs=19.0
Q ss_pred HHHHhhhcchhhhhhcCCCChh
Q 045855 63 AIDIITYNCWPAMLTFLGFTAE 84 (117)
Q Consensus 63 AI~~I~~~CWP~M~~slGfT~e 84 (117)
..|.|+-..||.+|+.+| +|.
T Consensus 163 C~RKtE~~~W~~LF~~lg-~P~ 183 (258)
T PF07064_consen 163 CARKTEVRYWPYLFDYLG-SPR 183 (258)
T ss_pred HHHhhHHHHHHHHHHhcC-CHH
Confidence 478999999999999999 877
No 7
>PF15284 PAGK: Phage-encoded virulence factor
Probab=33.71 E-value=40 Score=22.99 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHhhhhccccc
Q 045855 3 LKHVFFILALTCLIMANIANATSK 26 (117)
Q Consensus 3 ~~~~fl~~~lt~~i~a~~a~~~~~ 26 (117)
+|.+||.+.+++.-++..|++.|.
T Consensus 4 ~ksifL~l~~~LsA~~FSasamAa 27 (61)
T PF15284_consen 4 FKSIFLALVFILSAAGFSASAMAA 27 (61)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHH
Confidence 578888888777777666664443
No 8
>cd07442 CRD_SFRP4 Cysteine-rich domain of the secreted frizzled-related protein 4 (SFRP4), a Wnt antagonist. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related Protein 4 (SFRP4), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRDs domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs.
Probab=25.43 E-value=35 Score=25.49 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=19.2
Q ss_pred chhhHHHHHhhhcchhhhhhcCCCChhh
Q 045855 58 SDCYRAIDIITYNCWPAMLTFLGFTAEE 85 (117)
Q Consensus 58 ~~CC~AI~~I~~~CWP~M~~slGfT~eE 85 (117)
+-|-.-=..+-+.|||.|- ..||.|.|
T Consensus 76 ~PCRslCe~vr~~C~~~m~-~fg~~WP~ 102 (127)
T cd07442 76 KPCRSVCQRARDGCEPIMR-RYNHSWPE 102 (127)
T ss_pred CccHHHHHHHHHHHHHHHH-HhCCCCCC
Confidence 3564444556689999865 68999874
No 9
>cd07888 CRD_corin_2 One of two cysteine-rich domains of the corin protein, a type II transmembrane serine protease . The cysteine-rich domain (CRD) is an essential component of corin, a type II transmembrane serine protease which functions as the convertase of the pro-atrial natriuretic peptide (pro-ANP) in the heart. Corin contains two CRDs in its extracellular region, which play an important role in recognition of the physiological substrate, pro-ANP. This model characterizes the second (C-terminal) CRD.
Probab=23.48 E-value=42 Score=24.65 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=19.9
Q ss_pred chhhHHHHHhhhcchhhhhhcCCCChhh
Q 045855 58 SDCYRAIDIITYNCWPAMLTFLGFTAEE 85 (117)
Q Consensus 58 ~~CC~AI~~I~~~CWP~M~~slGfT~eE 85 (117)
+-|-.-=..+-+.|||.|- ..||.|.|
T Consensus 74 ~PCRslCe~vr~~C~~~m~-~fg~~WP~ 100 (122)
T cd07888 74 PPCRSLCRNSKERCESVLG-IVGLQWPE 100 (122)
T ss_pred CCcHHHHHHHHHHHHHHHH-HhCCCCCC
Confidence 3565555566689999887 57999885
No 10
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=21.68 E-value=70 Score=21.71 Aligned_cols=26 Identities=27% Similarity=0.508 Sum_probs=20.7
Q ss_pred HHhhhcchhhhhhcCCCChhhhhhhhh
Q 045855 65 DIITYNCWPAMLTFLGFTAEEGNMLRG 91 (117)
Q Consensus 65 ~~I~~~CWP~M~~slGfT~eE~~iLrG 91 (117)
+.+|.+ |+.+-..|||+..|-+..+.
T Consensus 12 ~~LG~d-Wk~LAr~Lg~se~dI~~i~~ 37 (84)
T cd08804 12 DHLGFS-WTELARELDFTEEQIHQIRI 37 (84)
T ss_pred HHHhhh-HHHHHHHcCCCHHHHHHHHH
Confidence 456778 99999999999887766543
No 11
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=21.39 E-value=45 Score=21.63 Aligned_cols=16 Identities=19% Similarity=0.480 Sum_probs=12.1
Q ss_pred cCchhhHHHHHhhhcc
Q 045855 56 IGSDCYRAIDIITYNC 71 (117)
Q Consensus 56 IG~~CC~AI~~I~~~C 71 (117)
-..+||.+|+.....|
T Consensus 24 Ps~~CC~~vk~~~~~C 39 (73)
T cd04660 24 PSRECCAALRRADLPC 39 (73)
T ss_pred CCHHHHHHHHcCCcCC
Confidence 3467999999876555
No 12
>cd07456 CRD_FZ5_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 5. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 5 (Fz5) and frizzled 8 (Fz8) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=20.55 E-value=53 Score=23.99 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=20.5
Q ss_pred chhhHHHHHhhhcchhhhhhcCCCChhhh
Q 045855 58 SDCYRAIDIITYNCWPAMLTFLGFTAEEG 86 (117)
Q Consensus 58 ~~CC~AI~~I~~~CWP~M~~slGfT~eE~ 86 (117)
+-|-.-=..+-++|||.|- ..||.|.|.
T Consensus 72 ~PCRslCe~vr~~C~~~m~-~~g~~WP~~ 99 (120)
T cd07456 72 PPCRSVCERARDGCAPIMR-QYGFAWPER 99 (120)
T ss_pred CccHHHHHHHHHHHHHHHH-HhCCCCCCc
Confidence 5675555666699999876 689998643
No 13
>cd07453 CRD_crescent Cysteine-rich domain of the crescent protein. The cysteine-rich domain (CRD) is an essential part of the crescent protein, a member of the secreted frizzled-related protein (SFRP) family, which regulates convergent extension movements (CEMs) during gastrulation and neurulation. Xenopus laevis crescent efficiently forms inhibitory complexes with Wnt5a and Wnt11, but this effect is cancelled in the presence of another member of the SFRP family, Frzb1. A potential role for Crescent in head formation is to regulate a non-canonical Wnt pathway positively in the adjacent posterior mesoderm, and negatively in the overlying anterior neuroectoderm.
Probab=20.19 E-value=51 Score=24.88 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=18.5
Q ss_pred hhHHHHHhhhcchhhhhhcCCCChhh
Q 045855 60 CYRAIDIITYNCWPAMLTFLGFTAEE 85 (117)
Q Consensus 60 CC~AI~~I~~~CWP~M~~slGfT~eE 85 (117)
|-.-=..+-+.|+|.| ..+||.|.|
T Consensus 74 CRslCe~vr~~C~~~m-~~~g~~WP~ 98 (135)
T cd07453 74 CRSLCEAVRSSCAPLM-ACYGYPWPE 98 (135)
T ss_pred cHHHHHHHHHHHHHHH-HHhCCCCCC
Confidence 5444456668999988 578999874
Done!