Query 045855
Match_columns 117
No_of_seqs 40 out of 42
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 10:32:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c8l_A FTSZ-like protein of un 40.7 12 0.00039 27.3 1.6 28 56-83 22-50 (122)
2 3idw_A Actin cytoskeleton-regu 26.3 26 0.00088 23.5 1.3 16 73-90 41-56 (72)
3 2ebo_A Ebola virus envelope gl 18.1 29 0.00098 23.4 0.2 9 55-63 47-55 (74)
4 1g0y_I Antagonist peptide AF10 17.0 44 0.0015 18.6 0.8 10 79-88 2-11 (26)
5 2knp_A Mcocc-1; disulfide-rich 15.7 16 0.00055 21.3 -1.3 12 69-80 17-28 (33)
6 1ebo_A Ebola virus envelope pr 14.5 40 0.0014 24.8 0.2 8 55-62 84-91 (131)
7 3qdr_B Colicin-A; COLA, TOLA, 12.0 1.1E+02 0.0039 19.9 1.8 16 102-117 34-49 (63)
8 2alg_A Non-specific lipid tran 11.9 1.6E+02 0.0054 19.1 2.6 41 56-96 24-77 (92)
9 1siy_A LTP 1, NS-LTP1, nonspec 11.7 1.6E+02 0.0054 19.1 2.5 41 56-96 23-76 (91)
10 1bwo_A NS-LTP1, nonspecific li 11.2 1.8E+02 0.006 18.8 2.6 41 56-96 23-76 (90)
No 1
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=40.71 E-value=12 Score=27.29 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=22.6
Q ss_pred cCchhhHHHH-HhhhcchhhhhhcCCCCh
Q 045855 56 IGSDCYRAID-IITYNCWPAMLTFLGFTA 83 (117)
Q Consensus 56 IG~~CC~AI~-~I~~~CWP~M~~slGfT~ 83 (117)
.-.++++|++ .|.|||.|.++..+|++.
T Consensus 22 ~TkAA~RAvrDAI~~nslp~~~~~~g~~~ 50 (122)
T 3c8l_A 22 PTIAASRAVRNAIAHNALPGVWEVAGLSH 50 (122)
T ss_dssp HHHHHHHHHHHHHTTCCCSSHHHHHTCSS
T ss_pred HHHHHHHHHHHHHhhhcchhHHHHCCCCC
Confidence 3456777875 799999999999999953
No 2
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=26.30 E-value=26 Score=23.49 Aligned_cols=16 Identities=44% Similarity=0.831 Sum_probs=13.4
Q ss_pred hhhhhcCCCChhhhhhhh
Q 045855 73 PAMLTFLGFTAEEGNMLR 90 (117)
Q Consensus 73 P~M~~slGfT~eE~~iLr 90 (117)
|.++-.||++ |||++|
T Consensus 41 ~~~Lr~LGi~--eGDIIr 56 (72)
T 3idw_A 41 NSMLRTLGLR--EGDIVR 56 (72)
T ss_dssp HHHHHHTTCC--HHHHHH
T ss_pred HHHHHHcCCc--hhhHHH
Confidence 3678889997 799987
No 3
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=18.13 E-value=29 Score=23.40 Aligned_cols=9 Identities=33% Similarity=0.652 Sum_probs=7.1
Q ss_pred ccCchhhHH
Q 045855 55 DIGSDCYRA 63 (117)
Q Consensus 55 ~IG~~CC~A 63 (117)
.+||+||-.
T Consensus 47 ilgpdc~i~ 55 (74)
T 2ebo_A 47 ILGPDCAIE 55 (74)
T ss_dssp HHGGGGGCC
T ss_pred ecCCccccC
Confidence 589999943
No 4
>1g0y_I Antagonist peptide AF10847; immunoglobulin, immune system; 3.00A {Homo sapiens} SCOP: k.19.1.1
Probab=16.99 E-value=44 Score=18.55 Aligned_cols=10 Identities=50% Similarity=0.458 Sum_probs=7.7
Q ss_pred CCCChhhhhh
Q 045855 79 LGFTAEEGNM 88 (117)
Q Consensus 79 lGfT~eE~~i 88 (117)
-+||+||.+-
T Consensus 2 tpftweesna 11 (26)
T 1g0y_I 2 TPFTWEESNA 11 (26)
T ss_dssp CCCCHHHHHH
T ss_pred Cccceecccc
Confidence 3799998774
No 5
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=15.68 E-value=16 Score=21.32 Aligned_cols=12 Identities=33% Similarity=1.035 Sum_probs=8.7
Q ss_pred hcchhhhhhcCC
Q 045855 69 YNCWPAMLTFLG 80 (117)
Q Consensus 69 ~~CWP~M~~slG 80 (117)
-+|||..-+-+|
T Consensus 17 crcwptvtpgvg 28 (33)
T 2knp_A 17 CRCWPTVTPGVG 28 (33)
T ss_dssp CCEEECSSTTEE
T ss_pred eeeccccCCCee
Confidence 379998876654
No 6
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=14.49 E-value=40 Score=24.77 Aligned_cols=8 Identities=38% Similarity=0.750 Sum_probs=6.7
Q ss_pred ccCchhhH
Q 045855 55 DIGSDCYR 62 (117)
Q Consensus 55 ~IG~~CC~ 62 (117)
.+||+||-
T Consensus 84 iLGPdCcI 91 (131)
T 1ebo_A 84 ILGPDCRI 91 (131)
T ss_dssp HHGGGGGC
T ss_pred ecCCcccc
Confidence 58999994
No 7
>3qdr_B Colicin-A; COLA, TOLA, complex, translocation, COLA binds to TOLA, METH protein transport-toxin complex; HET: MLY; 2.65A {Citrobacter freundii}
Probab=11.96 E-value=1.1e+02 Score=19.94 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=13.5
Q ss_pred CceeeeeeceeeeccC
Q 045855 102 GGLMVIYQPQVSKVLS 117 (117)
Q Consensus 102 ~~l~v~~~~~~~~~~~ 117 (117)
-+-+|.|-+.|+|||+
T Consensus 34 NSslVp~G~g~~RVLn 49 (63)
T 3qdr_B 34 NSSMVPYGRGFTRVLN 49 (63)
T ss_dssp TCEEEEETTEEEEECS
T ss_pred CcccccCCccHHHHHH
Confidence 4568999999999985
No 8
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=11.85 E-value=1.6e+02 Score=19.08 Aligned_cols=41 Identities=20% Similarity=0.451 Sum_probs=29.4
Q ss_pred cCchhhHHHHHhh-------h---cc--hhhhhhcC-CCChhhhhhhhhccccC
Q 045855 56 IGSDCYRAIDIIT-------Y---NC--WPAMLTFL-GFTAEEGNMLRGYCDAS 96 (117)
Q Consensus 56 IG~~CC~AI~~I~-------~---~C--WP~M~~sl-GfT~eE~~iLrGyCd~~ 96 (117)
--++||.+++.+. + .| ==...+++ |+...-+.-|-+-|.-.
T Consensus 24 p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv~ 77 (92)
T 2alg_A 24 VPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVS 77 (92)
T ss_dssp CCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCCC
Confidence 3468999999875 3 35 33344555 78888889999999654
No 9
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=11.74 E-value=1.6e+02 Score=19.06 Aligned_cols=41 Identities=20% Similarity=0.432 Sum_probs=29.3
Q ss_pred cCchhhHHHHHhh----------hcc--hhhhhhcC-CCChhhhhhhhhccccC
Q 045855 56 IGSDCYRAIDIIT----------YNC--WPAMLTFL-GFTAEEGNMLRGYCDAS 96 (117)
Q Consensus 56 IG~~CC~AI~~I~----------~~C--WP~M~~sl-GfT~eE~~iLrGyCd~~ 96 (117)
-.++||.+++.+- ..| =-....++ |+...-+.-|=+-|.-.
T Consensus 23 Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~~in~~~A~~LP~~Cgv~ 76 (91)
T 1siy_A 23 VPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVN 76 (91)
T ss_dssp CCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccCCcCHHHHHHHHHHcCCC
Confidence 4568999999972 245 33444556 78888888999999654
No 10
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=11.17 E-value=1.8e+02 Score=18.83 Aligned_cols=41 Identities=10% Similarity=0.344 Sum_probs=29.3
Q ss_pred cCchhhHHHHHhhh------------cchhhhhhcC-CCChhhhhhhhhccccC
Q 045855 56 IGSDCYRAIDIITY------------NCWPAMLTFL-GFTAEEGNMLRGYCDAS 96 (117)
Q Consensus 56 IG~~CC~AI~~I~~------------~CWP~M~~sl-GfT~eE~~iLrGyCd~~ 96 (117)
-.++||.+++.+-. .|-=....++ |+...-+.-|-+-|.-.
T Consensus 23 Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~ 76 (90)
T 1bwo_A 23 PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVN 76 (90)
T ss_dssp CCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTCC
T ss_pred CCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCCC
Confidence 45689999998752 4543444555 68888888899999654
Done!