BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045858
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures
Length = 135
Score = 119 bits (298), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 79/134 (58%), Gaps = 10/134 (7%)
Query: 12 QDLPQDYVNAHNAARAQVGVNPVKCDESIAAFARSYANRR----------YXXXXXXXXX 61
Q+ PQDY+ HN ARAQVGV P+ D ++A+ A++YAN R
Sbjct: 1 QNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGAGENLAKGGG 60
Query: 62 XXXXXDAVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNGGTFVG 121
AV LWVSE+ Y+Y +N C GK C HYT VVWRNSVR+GC + RCNNG F+
Sbjct: 61 DFTGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGWWFIS 120
Query: 122 CNYASPGDVVGQKP 135
CNY G+ +GQ+P
Sbjct: 121 CNYDPVGNWIGQRP 134
>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride
pdb|3Q2U|A Chain A, Structure Of Human Glioma Pathogenesis-Related Protein 1
Reveals Unique Loops And Surface Motifs
Length = 205
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 40/78 (51%), Gaps = 13/78 (16%)
Query: 68 AVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRC---------NNGGT 118
A+ W E DYD+ + C KVCGHYT VVW +S ++GCA C +NG
Sbjct: 98 AITNWYDEIQDYDFKTRICK--KVCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAH 155
Query: 119 FVGCNYASPGDVVGQKPY 136
F+ CNY PG PY
Sbjct: 156 FI-CNYG-PGGNYPTWPY 171
>pdb|1SMB|A Chain A, Crystal Structure Of Golgi-Associated Pr-1 Protein
Length = 154
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 18/141 (12%)
Query: 9 SRAQDLPQDYVNAHNAARAQVGVNPVKCDESIAAFARSY----ANRRYXXXXXXXXXXX- 63
S ++ + + AHN R + GV P+K +++ A+ Y A+ R
Sbjct: 4 SASKQFHNEVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQX 63
Query: 64 ------XXXDAVGL-----WVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVR 112
D G W SE +Y++ +G GH+T +VW+N+ ++G K
Sbjct: 64 GENLAWASYDQTGKEVADRWYSEIKNYNFQQPGFTSG--TGHFTAMVWKNTKKMGVGKAS 121
Query: 113 CNNGGTFVGCNYASPGDVVGQ 133
++G +FV Y G+VV +
Sbjct: 122 ASDGSSFVVARYFPAGNVVNE 142
>pdb|4AIW|A Chain A, Gapr-1 With Bound Inositol Hexakisphosphate
Length = 154
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 18/141 (12%)
Query: 9 SRAQDLPQDYVNAHNAARAQVGVNPVKCDESIAAFARSY----ANRRYXXXXXXXXXXX- 63
S ++ + + AHN R + GV P+K +++ A+ Y A+ R
Sbjct: 4 SASKQFHNEVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQC 63
Query: 64 ------XXXDAVGL-----WVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVR 112
D G W SE +Y++ +G GH+T +VW+N+ ++G K
Sbjct: 64 GENLAWASYDQTGKEVADRWYSEIKNYNFQQPGFTSG--TGHFTAMVWKNTKKMGVGKAS 121
Query: 113 CNNGGTFVGCNYASPGDVVGQ 133
++G +FV Y G+VV +
Sbjct: 122 ASDGSSFVVARYFPAGNVVNE 142
>pdb|1RC9|A Chain A, Crystal Structure Of Stecrisp, A Member Of Crisp Family
From Trimeresurus Stejnegeri Refined At 1.6 Angstroms
Resolution: Structual Relationship Of The Two Domains
Length = 221
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 67 DAVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNG--GTFVGCNY 124
D + W E D+ Y + V GHYT +VW S RIGCA C + F C Y
Sbjct: 88 DIIHAWHDEYKDFKYGVGADPPNAVTGHYTQIVWYKSYRIGCAAAYCPSSPYSYFFVCQY 147
Query: 125 ASPGDVVGQ 133
G+ +G+
Sbjct: 148 CPAGNFIGK 156
>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker
Derived From Snake Venom
Length = 221
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 67 DAVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNG--GTFVGCNY 124
D + W E D+ Y + + V GHYT +VW S R GCA C + F C Y
Sbjct: 88 DIIHAWHGEYKDFKYGVGAVPSDAVIGHYTQIVWYKSYRAGCAAAYCPSSKYSYFYVCQY 147
Query: 125 ASPGDVVGQ 133
G+++G+
Sbjct: 148 CPAGNIIGK 156
>pdb|2DDA|A Chain A, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|B Chain B, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|C Chain C, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|D Chain D, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
Length = 211
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 69 VGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNGGTFVGCNYASPG 128
V W E ++ Y + G V GHYT VVW S IGCA +C++ C Y G
Sbjct: 82 VQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSYLIGCASAKCSSSKYLYVCQYCPAG 141
Query: 129 DVVG 132
++ G
Sbjct: 142 NIRG 145
>pdb|2DDB|A Chain A, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|B Chain B, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|C Chain C, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|D Chain D, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|A Chain A, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|B Chain B, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|C Chain C, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|D Chain D, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
Length = 210
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 69 VGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNGGTFVGCNYASPG 128
V W E ++ Y + G V GHYT VVW S IGCA +C++ C Y G
Sbjct: 81 VQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSHLIGCASAKCSSSKYLYVCQYCPAG 140
Query: 129 DVVG 132
++ G
Sbjct: 141 NIRG 144
>pdb|2VZN|A Chain A, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
pdb|2VZN|B Chain B, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
Length = 218
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 67 DAVGLWVSEKADYD------YNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRC----NNG 116
+ + LW +E D+D + S+ KV GHYT +VW + +IGC ++ N
Sbjct: 130 EMILLWYNEVKDFDNRWISSFPSDDNILMKV-GHYTQIVWAKTTKIGCGRIMFKEPDNWT 188
Query: 117 GTFVGCNYASPGDVVGQKPY 136
++ CNY G+V+G Y
Sbjct: 189 KHYLVCNYGPAGNVLGAPIY 208
>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
pdb|1XTA|B Chain B, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
Length = 221
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 67 DAVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNGGT--FVGCNY 124
+ + LW E ++ Y + G V GHYT +VW + R GCA C + F C Y
Sbjct: 88 EIIHLWHDEYKNFVYGVGASPPGSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQY 147
Query: 125 ASPGDVVGQ--KPY 136
G+ G+ PY
Sbjct: 148 CPSGNFQGKTATPY 161
>pdb|1XX5|A Chain A, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|B Chain B, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|C Chain C, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|2GIZ|A Chain A, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|2GIZ|B Chain B, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|3MZ8|A Chain A, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
pdb|3MZ8|B Chain B, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
Length = 221
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 67 DAVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNGG--TFVGCNY 124
+ + LW E ++ Y + G V GHYT +VW + R GCA C + F C Y
Sbjct: 88 EIIHLWHDEYKNFVYGVGANPPGSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQY 147
Query: 125 ASPGDVVGQ--KPY 136
G+ G+ PY
Sbjct: 148 CPSGNFQGKTATPY 161
>pdb|1U53|A Chain A, Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein From The
Nematode Parasite Necator Americanus And A Vaccine
Antigen For Human Hookworm Infection
Length = 196
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 93 GHYTHVVWRNSVRIGCAKVRCNNGGTFVGCNYASPGDVVGQKPY 136
GHYT +VW+ +V++GC C+N +V C Y G+++G+ Y
Sbjct: 133 GHYTQMVWQETVKLGCYVEACSN-MCYVVCQYGPAGNMMGKDIY 175
>pdb|3NT8|A Chain A, Crystal Structure Of Na-Asp-1
pdb|3NT8|B Chain B, Crystal Structure Of Na-Asp-1
Length = 424
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 93 GHYTHVVWRNSVRIGCAKVRCNNGGTFVGCNYASPGDVVGQKPY 136
GHYT + W + ++GCA V CN+ TF C Y G+ +G Y
Sbjct: 357 GHYTQMAWDTTYKLGCAVVFCND-FTFGVCQYGPGGNYMGHVIY 399
>pdb|1QNX|A Chain A, Ves V 5, An Allergen From Vespula Vulgaris Venom
Length = 209
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 69 VGLWVSEKADYDYNSN-SCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNG---GTFVGCNY 124
V +W E DY+ S N GHYT +VW N+ +GC ++ ++ CNY
Sbjct: 135 VKMWEDEVKDYNPKKKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNY 194
Query: 125 ASPGDVVGQKPY 136
G+ ++ Y
Sbjct: 195 GPSGNFKNEELY 206
>pdb|4CTS|A Chain A, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|4CTS|B Chain B, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|1CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
pdb|3ENJ|A Chain A, Structure Of Pig Heart Citrate Synthase At 1.78 A
Resolution
Length = 437
Score = 26.9 bits (58), Expect = 3.5, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 69 VGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNS 103
VG VS++ DY N+ N+G+V Y H V R +
Sbjct: 292 VGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKT 326
>pdb|2CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
Length = 437
Score = 26.9 bits (58), Expect = 3.5, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 69 VGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNS 103
VG VS++ DY N+ N+G+V Y H V R +
Sbjct: 292 VGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKT 326
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,927,211
Number of Sequences: 62578
Number of extensions: 130957
Number of successful extensions: 233
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 20
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)