Query 045858
Match_columns 136
No_of_seqs 178 out of 1107
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:14:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05381 SCP_PR-1_like SCP_PR-1 100.0 5E-42 1.1E-46 230.1 14.1 121 16-136 2-136 (136)
2 cd05384 SCP_PRY1_like SCP_PRY1 100.0 2.7E-38 5.9E-43 210.3 12.7 116 13-132 1-129 (129)
3 cd05382 SCP_GAPR-1_like SCP_GA 100.0 5.3E-38 1.1E-42 209.3 11.0 116 13-130 1-132 (132)
4 cd05383 SCP_CRISP SCP_CRISP: S 100.0 5.3E-37 1.1E-41 206.4 12.2 114 14-127 2-138 (138)
5 smart00198 SCP SCP / Tpx-1 / A 100.0 2.3E-36 4.9E-41 204.1 11.5 114 14-127 2-144 (144)
6 cd05385 SCP_GLIPR-1_like SCP_G 100.0 7E-36 1.5E-40 202.2 11.9 113 13-127 1-144 (144)
7 cd05559 SCP_HrTT-1 SCP_HrTT-1: 100.0 5.1E-35 1.1E-39 196.3 10.7 111 15-125 1-136 (136)
8 cd00168 SCP SCP: SCP-like extr 100.0 2.5E-34 5.4E-39 189.3 11.3 108 16-125 2-122 (122)
9 KOG3017 Defense-related protei 100.0 3.4E-34 7.3E-39 206.5 7.2 124 13-136 40-198 (225)
10 cd05380 SCP_euk SCP_euk: SCP-l 100.0 5.7E-33 1.2E-37 186.8 9.4 111 15-125 1-144 (144)
11 PF00188 CAP: Cysteine-rich se 99.9 3.7E-23 8.1E-28 133.0 10.4 106 19-124 1-124 (124)
12 TIGR02909 spore_YkwD uncharact 99.8 6.5E-18 1.4E-22 112.1 10.5 95 13-125 3-126 (127)
13 cd05379 SCP_bacterial SCP_bact 99.6 2.4E-15 5.3E-20 97.9 9.3 91 16-124 2-121 (122)
14 COG2340 Uncharacterized protei 99.1 6.6E-10 1.4E-14 79.4 7.8 86 11-114 77-192 (207)
15 PF11054 Surface_antigen: Spor 79.9 16 0.00035 26.9 7.4 121 15-136 35-218 (254)
16 KOG0286 G-protein beta subunit 59.6 6 0.00013 30.1 1.6 35 96-131 78-112 (343)
17 KOG4439 RNA polymerase II tran 56.7 11 0.00024 32.2 2.8 50 4-54 774-845 (901)
18 PF04863 EGF_alliinase: Alliin 35.0 39 0.00085 19.0 1.9 16 34-49 1-16 (56)
19 PF03295 Pox_TAA1: Poxvirus tr 32.3 50 0.0011 18.9 2.1 18 13-30 24-41 (63)
20 PF13942 Lipoprotein_20: YfhG 30.6 32 0.0007 24.0 1.4 33 2-34 66-100 (179)
21 COG1318 Predicted transcriptio 30.4 42 0.0009 23.5 1.9 21 31-51 39-59 (182)
22 PF08557 Lipid_DES: Sphingolip 23.9 83 0.0018 16.3 1.9 21 14-34 18-38 (39)
23 PF11903 DUF3423: Protein of u 21.3 1.2E+02 0.0027 17.9 2.5 19 31-49 1-19 (72)
24 PF13983 YsaB: YsaB-like lipop 20.4 69 0.0015 18.9 1.3 14 117-130 58-71 (77)
No 1
>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=5e-42 Score=230.15 Aligned_cols=121 Identities=62% Similarity=1.179 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHhcCCCCceeCHHHHHHHHHHHhh----h--------cccceeeecCC-CchhhhhHHhhhhcccCCCC
Q 045858 16 QDYVNAHNAARAQVGVNPVKCDESIAAFARSYANR----R--------YGENLAGSSGN-LSGSDAVGLWVSEKADYDYN 82 (136)
Q Consensus 16 ~~il~~hN~~R~~~~m~~L~W~~~La~~A~~~a~~----c--------~Gen~~~~~~~-~~~~~~v~~W~~e~~~y~~~ 82 (136)
++||+.||.+|+.++|++|+||++|+..||.||++ | +|||+++..+. ..+.++|+.|++|...|++.
T Consensus 2 ~~il~~hN~~R~~~~~~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~~~GeNi~~~~~~~~~~~~~v~~W~~e~~~y~~~ 81 (136)
T cd05381 2 QDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRRGDCALVHSNGPYGENLFWGSGGNWSAADAVASWVSEKKYYDYD 81 (136)
T ss_pred hHHHHHHHHHHHhcCCCcceECHHHHHHHHHHHHHhcCCCCcccCCCCCCceEEEecCCCCCHHHHHHHHHhccccCCCC
Confidence 68999999999999999999999999999999999 6 79999987643 57889999999999999998
Q ss_pred CCCCCCCccchhHHHHHHHhCCeEeEEEEEeCC-CCEEEEEEccCCCCCCCCCCC
Q 045858 83 SNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNN-GGTFVGCNYASPGDVVGQKPY 136 (136)
Q Consensus 83 ~~~~~~~~~~~~ftq~iw~~~~~vGCa~~~c~~-~~~~~vC~Y~p~gn~~g~~~Y 136 (136)
.+.+..+..++|||||||+++++||||++.|.+ +..++||+|+|+||+.|++||
T Consensus 82 ~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~vvC~Y~p~gn~~g~~~Y 136 (136)
T cd05381 82 SNTCAAGKMCGHYTQVVWRNTTRVGCARVTCDNGGGVFIICNYDPPGNYIGQRPY 136 (136)
T ss_pred CCCcCCCccchHHHHHHHHhcCEeceEEEEeCCCCcEEEEEEeeCCCCCCCCCCC
Confidence 887776678999999999999999999999987 458999999999999999998
No 2
>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.
Probab=100.00 E-value=2.7e-38 Score=210.26 Aligned_cols=116 Identities=38% Similarity=0.824 Sum_probs=104.6
Q ss_pred chHHHHHHHHHHHHHhcCCCCceeCHHHHHHHHHHHhhh------------cccceeeecCCCchhhhhHHhhhhcccCC
Q 045858 13 DLPQDYVNAHNAARAQVGVNPVKCDESIAAFARSYANRR------------YGENLAGSSGNLSGSDAVGLWVSEKADYD 80 (136)
Q Consensus 13 ~~~~~il~~hN~~R~~~~m~~L~W~~~La~~A~~~a~~c------------~Gen~~~~~~~~~~~~~v~~W~~e~~~y~ 80 (136)
+.++.||+.||.+|+.++|++|+||++|+..||.||++| +|||++.... ++.++|+.|++|...|+
T Consensus 1 ~~~~~iL~~hN~~R~~~g~~~L~w~~~La~~A~~~a~~c~~~~~~~~~~~~~geNi~~~~~--~~~~~v~~W~~e~~~y~ 78 (129)
T cd05384 1 SFASSILDAHNSKRALHGVQPLTWNNTLAEYAQDYANSYDCSGNLAHSGGPYGENLAAGYP--SGTSAVDAWYDEIEDYD 78 (129)
T ss_pred CHHHHHHHHHHHHHHHcCCCcCccCHHHHHHHHHHHHHhccCCceecCCCCCCcEEEEecC--CHHHHHHHHHhhhhhCC
Confidence 468999999999999999999999999999999999998 7999987543 68899999999999999
Q ss_pred CCCCCCCCCccchhHHHHHHHhCCeEeEEEEEeCCC-CEEEEEEccCCCCCCC
Q 045858 81 YNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNG-GTFVGCNYASPGDVVG 132 (136)
Q Consensus 81 ~~~~~~~~~~~~~~ftq~iw~~~~~vGCa~~~c~~~-~~~~vC~Y~p~gn~~g 132 (136)
|..+.+ +..++|||||||+++++||||++.|.+. ..++||+|+|+||+.|
T Consensus 79 ~~~~~~--~~~~~h~tqmvw~~t~~vGCa~~~c~~~~~~~~vC~Y~p~Gn~~g 129 (129)
T cd05384 79 YSNPGF--SEATGHFTQLVWKSTTQVGCAYKDCGGAWGWYIVCEYDPAGNVIG 129 (129)
T ss_pred CCCCCC--CCcccchhhhhhhccceeeeEEEEeCCCCeEEEEEEEECCCCCCc
Confidence 987654 3569999999999999999999999873 5889999999999875
No 3
>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.
Probab=100.00 E-value=5.3e-38 Score=209.29 Aligned_cols=116 Identities=37% Similarity=0.703 Sum_probs=105.3
Q ss_pred chHHHHHHHHHHHHHhcCCCCceeCHHHHHHHHHHHhhh-------------cccceeeecC---CCchhhhhHHhhhhc
Q 045858 13 DLPQDYVNAHNAARAQVGVNPVKCDESIAAFARSYANRR-------------YGENLAGSSG---NLSGSDAVGLWVSEK 76 (136)
Q Consensus 13 ~~~~~il~~hN~~R~~~~m~~L~W~~~La~~A~~~a~~c-------------~Gen~~~~~~---~~~~~~~v~~W~~e~ 76 (136)
++++.||+.||.+|+.++|++|+||++|+..||.||++| +|||++...+ ...+.++|+.|++|.
T Consensus 1 ~~~~~iL~~hN~~R~~~g~~~L~wd~~La~~A~~~a~~c~~~~~~~h~~~~~~GeN~~~~~~~~~~~~~~~~v~~W~~e~ 80 (132)
T cd05382 1 DFQKECLDAHNEYRALHGAPPLKLDKELAKEAQKWAEKLASSGKLQHSSPSGYGENLAYASGSGPDLTGEEAVDSWYNEI 80 (132)
T ss_pred CHHHHHHHHHHHHHHHcCCCcCeeCHHHHHHHHHHHHHhhhcCceeCCCCCCCCceeEEecCCCCCCCHHHHHHHHHhcc
Confidence 468999999999999999999999999999999999999 6999998763 558899999999999
Q ss_pred ccCCCCCCCCCCCccchhHHHHHHHhCCeEeEEEEEeCCCCEEEEEEccCCCCC
Q 045858 77 ADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNGGTFVGCNYASPGDV 130 (136)
Q Consensus 77 ~~y~~~~~~~~~~~~~~~ftq~iw~~~~~vGCa~~~c~~~~~~~vC~Y~p~gn~ 130 (136)
..|++..+.. +..++||+||||+++++||||++.|+.+..++||+|+|+||+
T Consensus 81 ~~y~~~~~~~--~~~~gh~tqmvw~~t~~vGCa~~~~~~~~~~~vC~Y~p~Gn~ 132 (132)
T cd05382 81 KKYDFNKPGF--SSKTGHFTQVVWKSSTELGVGVAKSKKGCVYVVARYRPAGNV 132 (132)
T ss_pred ccCCCCCCCC--CCCCCCeEEeEecCCCceeeEEEEcCCCCEEEEEEEeCCCCC
Confidence 9999975543 356999999999999999999999997778999999999995
No 4
>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t
Probab=100.00 E-value=5.3e-37 Score=206.37 Aligned_cols=114 Identities=34% Similarity=0.581 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHHHHhcC-----CCCceeCHHHHHHHHHHHhhh----------------cccceeeecCCCchhhhhHHh
Q 045858 14 LPQDYVNAHNAARAQVG-----VNPVKCDESIAAFARSYANRR----------------YGENLAGSSGNLSGSDAVGLW 72 (136)
Q Consensus 14 ~~~~il~~hN~~R~~~~-----m~~L~W~~~La~~A~~~a~~c----------------~Gen~~~~~~~~~~~~~v~~W 72 (136)
.|+.||+.||.+|+.+. |++|+||++||..||.||++| +|||++.......+.++|+.|
T Consensus 2 ~~~~il~~HN~~R~~~~p~a~~M~~l~Wd~~La~~A~~~a~~C~~~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~av~~W 81 (138)
T cd05383 2 VQKEIVDLHNELRRSVNPTASNMLKMEWNEEAAQNAKKWANTCNLTHSPPNGRTIGGITCGENIFMSSYPRSWSDVIQAW 81 (138)
T ss_pred HHHHHHHHHHHHhccCCCCcccCcccEeCHHHHHHHHHHHhcCCCcCCchhhcccCCCCcceeeeccCCCCCHHHHHHHH
Confidence 57899999999999975 778999999999999999999 399998776666789999999
Q ss_pred hhhcccCCCCCCCCCCCccchhHHHHHHHhCCeEeEEEEEeCCC--CEEEEEEccCC
Q 045858 73 VSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNG--GTFVGCNYASP 127 (136)
Q Consensus 73 ~~e~~~y~~~~~~~~~~~~~~~ftq~iw~~~~~vGCa~~~c~~~--~~~~vC~Y~p~ 127 (136)
++|...|+|..+.+..+..++|||||||+++++||||++.|..+ ..++||+|+|+
T Consensus 82 ~~e~~~y~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~vC~Y~P~ 138 (138)
T cd05383 82 YDEYKDFKYGVGATPPGAVVGHYTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYCPA 138 (138)
T ss_pred HHHHHhCCCCCCCCCCCCchhhHHHHHHHhccccceEEEECCCCCcCEEEEEecCCC
Confidence 99999999998776666789999999999999999999999875 58999999995
No 5
>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.
Probab=100.00 E-value=2.3e-36 Score=204.11 Aligned_cols=114 Identities=42% Similarity=0.725 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHHHhcC-----------CCCceeCHHHHHHHHHHHhhh---------cccceeeecC-----CCchhhh
Q 045858 14 LPQDYVNAHNAARAQVG-----------VNPVKCDESIAAFARSYANRR---------YGENLAGSSG-----NLSGSDA 68 (136)
Q Consensus 14 ~~~~il~~hN~~R~~~~-----------m~~L~W~~~La~~A~~~a~~c---------~Gen~~~~~~-----~~~~~~~ 68 (136)
.|+.||+.||.+|+.++ |++|+||++||..|+.+|++| +|||++...+ ...+.++
T Consensus 2 ~~~~iL~~HN~~R~~~a~G~~~~p~a~~m~~l~Wd~~La~~A~~~a~~C~~~~~~~~~~GeNi~~~~~~~~~~~~~~~~a 81 (144)
T smart00198 2 QQQEILDAHNKLRSQVAKGLLANPAASNMLKLTWDCELASSAQNWANQCPFGHSTPRGYGENLAWWSSSTDLPITYASAA 81 (144)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHHHHhCCCcCCCcCCcCcceEEecccCcccchhHHHH
Confidence 58999999999999999 999999999999999999999 7999998653 3477889
Q ss_pred hHHhhhhcccCCCCCCCCCC-CccchhHHHHHHHhCCeEeEEEEEeCCCC---EEEEEEccCC
Q 045858 69 VGLWVSEKADYDYNSNSCNA-GKVCGHYTHVVWRNSVRIGCAKVRCNNGG---TFVGCNYASP 127 (136)
Q Consensus 69 v~~W~~e~~~y~~~~~~~~~-~~~~~~ftq~iw~~~~~vGCa~~~c~~~~---~~~vC~Y~p~ 127 (136)
|+.|++|...|++..+.+.. +..++|||||||+++++||||++.|.++. .++||+|+|+
T Consensus 82 v~~W~~e~~~y~~~~~~~~~~~~~~~hftqmvw~~s~~vGCa~~~c~~~~~~~~~~vC~Y~P~ 144 (144)
T smart00198 82 VQLWYDEFQDYGYSSNTCKDTNGKIGHYTQVVWAKTYKVGCGVSNCPDGTKKKTVVVCNYDPP 144 (144)
T ss_pred HHHHHHHHHHcCCCCCccccCccchhHHHHHHHHhcCCcceEEEECCCCCcceEEEEEecCCC
Confidence 99999999999998877664 56799999999999999999999998874 6999999995
No 6
>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=7e-36 Score=202.21 Aligned_cols=113 Identities=38% Similarity=0.690 Sum_probs=100.0
Q ss_pred chHHHHHHHHHHHHHhcC-----CCCceeCHHHHHHHHHHHhhh--------------------cccceeeecC-CCchh
Q 045858 13 DLPQDYVNAHNAARAQVG-----VNPVKCDESIAAFARSYANRR--------------------YGENLAGSSG-NLSGS 66 (136)
Q Consensus 13 ~~~~~il~~hN~~R~~~~-----m~~L~W~~~La~~A~~~a~~c--------------------~Gen~~~~~~-~~~~~ 66 (136)
+++++||+.||.+|+.+. |++|+||++|+..||.||++| +||||+.... ...+.
T Consensus 1 ~f~~~~L~~HN~~R~~~~p~a~~m~~l~Wd~~La~~Aq~~a~~C~~~~~~~~~~~~~~~~~~~~~GeNi~~~~~~~~~~~ 80 (144)
T cd05385 1 EFIDECVRIHNELRSKVSPPAANMRYMTWDAALAKTARAWAKKCKFKHNIYLGKRYKCHPKFTSVGENIWLGSIYIFSPK 80 (144)
T ss_pred CHHHHHHHHHHHHHhhCCCCcccCcccccCHHHHHHHHHHHhcCCCCCCchhhcccccccccCcccceeeecccCCCCHH
Confidence 478999999999999994 899999999999999999999 4899987653 45788
Q ss_pred hhhHHhhhhcccCCCCCCCCCCCccchhHHHHHHHhCCeEeEEEEEeCCC-----CEEEEEEccCC
Q 045858 67 DAVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNG-----GTFVGCNYASP 127 (136)
Q Consensus 67 ~~v~~W~~e~~~y~~~~~~~~~~~~~~~ftq~iw~~~~~vGCa~~~c~~~-----~~~~vC~Y~p~ 127 (136)
++|+.||+|...|+|..+.+. ..++|||||||+++++||||+++|+.+ ..++||+|+|+
T Consensus 81 ~av~~W~~e~~~y~~~~~~~~--~~~ghftqmvw~~t~~vGCa~~~c~~~~~~~~~~~vVC~Y~p~ 144 (144)
T cd05385 81 NAVTSWYNEGKFYDFDTNSCS--RVCGHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFVCNYAPA 144 (144)
T ss_pred HHHHHHHHHHHhCCCCCCCCC--CcccCHHHHHHhhccccceEEEECCCCCCccccEEEEEeCCCC
Confidence 999999999999999877654 469999999999999999999999874 26899999984
No 7
>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=5.1e-35 Score=196.31 Aligned_cols=111 Identities=43% Similarity=0.803 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHhcC-----CCCceeCHHHHHHHHHHHhhh------------cccceeeecC-CCchhhhhHHhhhhc
Q 045858 15 PQDYVNAHNAARAQVG-----VNPVKCDESIAAFARSYANRR------------YGENLAGSSG-NLSGSDAVGLWVSEK 76 (136)
Q Consensus 15 ~~~il~~hN~~R~~~~-----m~~L~W~~~La~~A~~~a~~c------------~Gen~~~~~~-~~~~~~~v~~W~~e~ 76 (136)
|+.||+.||.+|+.++ |.+|+||++||..||.||++| +|||++...+ ...+.++|+.|++|.
T Consensus 1 r~~il~~HN~~R~~~~p~a~~m~~L~Wd~~La~~A~~~a~~C~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~v~~W~~e~ 80 (136)
T cd05559 1 RLNLVDLHNQYRSQVSPPAANMLKMTWDEELAALAEAYARKCIWDHNPDRGHLRVGENLFISTGPPFDATKAVEDWNNEK 80 (136)
T ss_pred CcHHHHHHHHHHhhCCCccccCcccccCHHHHHHHHHHHHhccccCCCcccCCCceeeeeecCCCCCCHHHHHHHHHHHH
Confidence 5789999999999986 779999999999999999999 6999987764 467899999999999
Q ss_pred ccCCCCCCCCCCCccchhHHHHHHHhCCeEeEEEEEeCCC-------CEEEEEEcc
Q 045858 77 ADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNG-------GTFVGCNYA 125 (136)
Q Consensus 77 ~~y~~~~~~~~~~~~~~~ftq~iw~~~~~vGCa~~~c~~~-------~~~~vC~Y~ 125 (136)
..|+|..+.+..+..++|||||||+++++||||++.|+++ ..++||+|+
T Consensus 81 ~~y~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~~~~~vC~Y~ 136 (136)
T cd05559 81 LDYNYNTNTCAPNKMCGHYTQVVWANTFKIGCGSYFCETLEVLRWENATLLVCNYG 136 (136)
T ss_pred HhcCCCCCCCCCCCcccchHHHHHhccCccceEEEECCCCCCCCcccCEEEEecCC
Confidence 9999998877777789999999999999999999999752 478999995
No 8
>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as
Probab=100.00 E-value=2.5e-34 Score=189.34 Aligned_cols=108 Identities=41% Similarity=0.764 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHhc-CCCCceeCHHHHHHHHHHHhhh------------cccceeeecCCCchhhhhHHhhhhcccCCCC
Q 045858 16 QDYVNAHNAARAQV-GVNPVKCDESIAAFARSYANRR------------YGENLAGSSGNLSGSDAVGLWVSEKADYDYN 82 (136)
Q Consensus 16 ~~il~~hN~~R~~~-~m~~L~W~~~La~~A~~~a~~c------------~Gen~~~~~~~~~~~~~v~~W~~e~~~y~~~ 82 (136)
++||+.||.+|+.+ +|+||+||++|+..|+.+|++| +|||++...++.++..+|+.|++|...|+|.
T Consensus 2 ~~il~~hN~~R~~~a~~~~L~wd~~La~~A~~~a~~c~~~h~~~~~~~~~geNi~~~~~~~~~~~~v~~W~~e~~~y~~~ 81 (122)
T cd00168 2 QEVVRLHNSYRAKVNGMLPMSWDAELAKTAQNYANRCIFKHSGEDGRGFVGENLAAGSYDMTGPAAVQAWYNEIKNYNFG 81 (122)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHHhhccccCCCcccCCCCCceeEEecCCCCHHHHHHHHHHHHHhCCCC
Confidence 67999999999999 9999999999999999999999 6999998776578999999999999999998
Q ss_pred CCCCCCCccchhHHHHHHHhCCeEeEEEEEeCCCCEEEEEEcc
Q 045858 83 SNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNGGTFVGCNYA 125 (136)
Q Consensus 83 ~~~~~~~~~~~~ftq~iw~~~~~vGCa~~~c~~~~~~~vC~Y~ 125 (136)
++.. +..++||+||||+++++||||++.|+.+..++||+|+
T Consensus 82 ~~~~--~~~~~h~~qmvw~~s~~vGca~~~~~~~~~~~vC~Y~ 122 (122)
T cd00168 82 QPGF--SSGTGHYTQVVWKNTTKIGCGVAFCGSNSYYVVCNYG 122 (122)
T ss_pred CCCC--CCCccchhhhhcccCCeeeeEEEEcCCCCEEEEEeCc
Confidence 5543 3558999999999999999999999977799999995
No 9
>KOG3017 consensus Defense-related protein containing SCP domain [Function unknown]
Probab=100.00 E-value=3.4e-34 Score=206.54 Aligned_cols=124 Identities=45% Similarity=0.847 Sum_probs=111.2
Q ss_pred chHHHHHHHHHHHHHhcC-----CCCceeCHHHHHHHHHHHhhh--------------cccceeeecCC-------Cchh
Q 045858 13 DLPQDYVNAHNAARAQVG-----VNPVKCDESIAAFARSYANRR--------------YGENLAGSSGN-------LSGS 66 (136)
Q Consensus 13 ~~~~~il~~hN~~R~~~~-----m~~L~W~~~La~~A~~~a~~c--------------~Gen~~~~~~~-------~~~~ 66 (136)
+++++|++.||.+|..+. |++|+||++||..||.||++| +||||++.++. ....
T Consensus 40 ~~~~~~~~~hn~~r~~~~~~as~m~~m~Wd~~La~~Aq~~a~~c~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~~~~~ 119 (225)
T KOG3017|consen 40 NLRSEILNGHNVARGAVGPPASNMMKLKWDDELAALAQNWANTCPFGHDKCVHTSFGPYGENLAWGWSSNPPLSLDTSGA 119 (225)
T ss_pred HHHHHHHhhhHHhcCccCCchHhCccccCCHHHHHHHHHHHhhCCcccCccccccCCCCcccceeeccCCCCccccccHH
Confidence 678999999999999999 999999999999999999999 39999987753 4677
Q ss_pred hhhHHhhhhcccCCCCCCCCCC---CccchhHHHHHHHhCCeEeEEEEEeCCC-----CEEEEEEccCCCCCCC-CCCC
Q 045858 67 DAVGLWVSEKADYDYNSNSCNA---GKVCGHYTHVVWRNSVRIGCAKVRCNNG-----GTFVGCNYASPGDVVG-QKPY 136 (136)
Q Consensus 67 ~~v~~W~~e~~~y~~~~~~~~~---~~~~~~ftq~iw~~~~~vGCa~~~c~~~-----~~~~vC~Y~p~gn~~g-~~~Y 136 (136)
.+++.|+.|...|++.++.+.. +..++|||||||+++++||||++.|.++ ..++||+|+|+||..+ +.||
T Consensus 120 ~a~~~w~~e~~~~~~~~~~~~~~~~~~~~gHyTQ~vw~~s~~vGCgv~~c~~~~~~~~~~~~vC~Y~p~g~~~~~~~~y 198 (225)
T KOG3017|consen 120 LAVEAWESEFQEYDWSSNTCSSADFGEGIGHYTQMVWAKSTKVGCGVVRCGNGSNGYNTVAVVCNYDPPGNNINGEIPY 198 (225)
T ss_pred HHHHHHHHHHHHccCcccccCcccCCCcceEEEEEEEeCCceeceeeccCCCCCCCcceEEEEEEeecCCCCcCCCCcC
Confidence 7999999999999999998875 6789999999999999999999999887 5799999999955545 6776
No 10
>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=5.7e-33 Score=186.81 Aligned_cols=111 Identities=38% Similarity=0.697 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHhc------------CCCCceeCHHHHHHHHHHHhhh------------cccceeeecCC-----Cch
Q 045858 15 PQDYVNAHNAARAQV------------GVNPVKCDESIAAFARSYANRR------------YGENLAGSSGN-----LSG 65 (136)
Q Consensus 15 ~~~il~~hN~~R~~~------------~m~~L~W~~~La~~A~~~a~~c------------~Gen~~~~~~~-----~~~ 65 (136)
|+.||+.||.+|+.+ .|++|+||++||..|+.||++| +|||++..... ..+
T Consensus 1 ~~~il~~HN~~R~~~a~g~~~~~p~a~~m~~l~Wd~~La~~A~~~a~~C~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~~ 80 (144)
T cd05380 1 RQAILDAHNELRSKVAKGTYSLLPPASNMPKLKWDDELAALAQNWAKTCVFEHSPCRNTGGVGQNLAAGSSTGSTVEELA 80 (144)
T ss_pred CcHHHHHHHHHHHHhhcCCCCCCCchhcCCcceeCHHHHHHHHHHHhcCCCcCCcccCCCCCCcEEEEeccCCCCHHHHH
Confidence 468999999999999 6999999999999999999999 59999987642 368
Q ss_pred hhhhHHhhhhcccCCCCCC-CCCCCccchhHHHHHHHhCCeEeEEEEEeCC---CCEEEEEEcc
Q 045858 66 SDAVGLWVSEKADYDYNSN-SCNAGKVCGHYTHVVWRNSVRIGCAKVRCNN---GGTFVGCNYA 125 (136)
Q Consensus 66 ~~~v~~W~~e~~~y~~~~~-~~~~~~~~~~ftq~iw~~~~~vGCa~~~c~~---~~~~~vC~Y~ 125 (136)
.++|+.|++|...|++... ....+..++|||||||+++++||||++.|.. ...++||+|+
T Consensus 81 ~~~v~~W~~e~~~~~~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~~~~~~~~~~~~vC~Y~ 144 (144)
T cd05380 81 EDAVNAWYNELKDYGFGSNPTNNFNSGIGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS 144 (144)
T ss_pred HHHHHHHHHHHHHcCCCcCcccccccchhHHHHHHHHhcCccceEEEEeecCCceEEEEEecCC
Confidence 8899999999999999875 3344567999999999999999999999985 3699999995
No 11
>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....
Probab=99.90 E-value=3.7e-23 Score=133.01 Aligned_cols=106 Identities=39% Similarity=0.586 Sum_probs=79.8
Q ss_pred HHHHHHHH-HhcCCCCceeCHHHHHHHHHHHhhh---------cccceeeecCCCchhhh----hHHhhhhcccCCCCC-
Q 045858 19 VNAHNAAR-AQVGVNPVKCDESIAAFARSYANRR---------YGENLAGSSGNLSGSDA----VGLWVSEKADYDYNS- 83 (136)
Q Consensus 19 l~~hN~~R-~~~~m~~L~W~~~La~~A~~~a~~c---------~Gen~~~~~~~~~~~~~----v~~W~~e~~~y~~~~- 83 (136)
|+.||++| ...++++|+||++|+..|+.+|+.| .|+++............ ++.|+.+...+++..
T Consensus 1 L~~~N~~R~~~~~~~~L~~d~~L~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (124)
T PF00188_consen 1 LDLHNEYRSAANGLPPLKWDPELAKAAQAHAKYCANSNSLSHDSGENGSQSSRFGSYSDAQVTAVENWYSESKNYNFQNQ 80 (124)
T ss_dssp HHHHHHHHHBSSTBB--EE-HHHHHHHHHHHTTTCSSEETTEESEEEEEEESSTTSHHHHHHHHHHHHHGGGGGEETTCS
T ss_pred CHHHHHHHHHhCCCCCCeeCHHHHHHHHHhhHHhhhhcccccccCCCCccccccccccchhhHHHHHHHhcccccccccc
Confidence 78999999 7777888999999999999999999 56666655432222222 899999999987772
Q ss_pred -CCCCCCccchhHHHHHHHhCCeEeEEEEEeCCCC--EEEEEEc
Q 045858 84 -NSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNGG--TFVGCNY 124 (136)
Q Consensus 84 -~~~~~~~~~~~ftq~iw~~~~~vGCa~~~c~~~~--~~~vC~Y 124 (136)
....-...++||++|+|+.+++||||++.|..+. .++||.|
T Consensus 81 ~~~~~~~~~~~h~~~ll~~~~~~iGca~~~~~~~~~~~~~vc~y 124 (124)
T PF00188_consen 81 SIFNSWMNSPGHFTNLLWPNTTRIGCAVANCPNGKNNYYWVCNY 124 (124)
T ss_dssp TEESSTTSTCHHHHHHT-TT--EEEEEEEEETTSSSEEEEEEEE
T ss_pred hhhhccCCchhhhhhhhcCCCCEEEEEEEEeCCCCeeEEEEEEC
Confidence 1112235689999999999999999999999885 9999998
No 12
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=99.77 E-value=6.5e-18 Score=112.08 Aligned_cols=95 Identities=25% Similarity=0.369 Sum_probs=81.9
Q ss_pred chHHHHHHHHHHHHHhcCCCCceeCHHHHHHHHHHHhhh-----------------------------cccceeeecCCC
Q 045858 13 DLPQDYVNAHNAARAQVGVNPVKCDESIAAFARSYANRR-----------------------------YGENLAGSSGNL 63 (136)
Q Consensus 13 ~~~~~il~~hN~~R~~~~m~~L~W~~~La~~A~~~a~~c-----------------------------~Gen~~~~~~~~ 63 (136)
+.++++|+.||.+|..++++||+||+.|+..|+.||+.+ .||||+.+. .
T Consensus 3 ~~e~~~l~~iN~~R~~~Gl~pL~~~~~L~~~A~~hA~~ma~~~~~~H~~~~~~~~~~r~~~~g~~~~~~gENi~~g~--~ 80 (127)
T TIGR02909 3 AEEKRVVELVNAERAKNGLKPLKADPELSKVARLKSEDMRDKNYFSHTSPTYGSPFDMMKKFGISYRMAGENIAYGN--S 80 (127)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHHhCCcccccCCCCCCHHHHHHHcCCCcccceeeeeccC--C
Confidence 457889999999999999999999999999999999988 278887543 3
Q ss_pred chhhhhHHhhhhcccCCCCCCCCCCCccchhHHHHHHHhCCeEeEEEEEeCCCCEEEEEEcc
Q 045858 64 SGSDAVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNGGTFVGCNYA 125 (136)
Q Consensus 64 ~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~ftq~iw~~~~~vGCa~~~c~~~~~~~vC~Y~ 125 (136)
++..+|+.|++ +.+|+++|+|+..+.+|||++.+++++.|.|-.|.
T Consensus 81 ~~~~~v~~W~~----------------S~gH~~nil~~~~~~~Gvg~~~~~~g~~y~~q~F~ 126 (127)
T TIGR02909 81 TVEAVHNAWMN----------------SPGHRANILNPNYTEIGVGYVEGGSGGIYWTQMFI 126 (127)
T ss_pred CHHHHHHHHHc----------------CHhHHHHHcCCCcCeEeEEEEeCCCCCeEEEEEec
Confidence 67889999984 26899999999999999999998887677776653
No 13
>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.
Probab=99.63 E-value=2.4e-15 Score=97.92 Aligned_cols=91 Identities=27% Similarity=0.387 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhcCCCCceeCHHHHHHHHHHHhhh-----------------------------cccceeeecCCCchh
Q 045858 16 QDYVNAHNAARAQVGVNPVKCDESIAAFARSYANRR-----------------------------YGENLAGSSGNLSGS 66 (136)
Q Consensus 16 ~~il~~hN~~R~~~~m~~L~W~~~La~~A~~~a~~c-----------------------------~Gen~~~~~~~~~~~ 66 (136)
+.+++.+|.+|..++++||+||.+|+..|+.+|..+ .|||++.... .+.
T Consensus 2 ~~~~~~iN~~R~~~gl~pl~~~~~l~~~A~~~a~~~~~~~~~~h~~~~~~~~~~~~~~~g~~~~~~~eni~~~~~--~~~ 79 (122)
T cd05379 2 QEALELINAYRAQNGLPPLTWDPALAAAAQAHARDMAANGYFSHTGPDGSSPFDRARAAGYPYSSAGENIAYGYS--TAE 79 (122)
T ss_pred hHHHHHHHHHHHHcCCCCCccChHHHHHHHHHHHHHHhcCccCCcCCCCCCHHHHHHHcCCCcCccchhhcccCC--CHH
Confidence 578999999999999999999999999999999998 1666665432 688
Q ss_pred hhhHHhhhhcccCCCCCCCCCCCccchhHHHHHHHhCCeEeEEEEEeCCCCEEEEEEc
Q 045858 67 DAVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNGGTFVGCNY 124 (136)
Q Consensus 67 ~~v~~W~~e~~~y~~~~~~~~~~~~~~~ftq~iw~~~~~vGCa~~~c~~~~~~~vC~Y 124 (136)
++++.|+++ .+|+.+|+++..+++|||+....++..++|..|
T Consensus 80 ~~~~~w~~~----------------~~H~~~ll~~~~~~~Gvg~~~~~~~~~y~~~~f 121 (122)
T cd05379 80 AAVDGWMNS----------------PGHRANILNPDYTEVGVGVAYGGDGGYYWVQVF 121 (122)
T ss_pred HHHHHHhCC----------------HhHHHHHcCCCcceeeEEEEeCCCCCeEEEEec
Confidence 899999743 689999999999999999999887767777665
No 14
>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown]
Probab=99.07 E-value=6.6e-10 Score=79.44 Aligned_cols=86 Identities=26% Similarity=0.330 Sum_probs=71.6
Q ss_pred CCchHHHHHHHHHHHHHhcCCCCceeCHHHHHHHHHHHhhh-----------------------------cccceeeecC
Q 045858 11 AQDLPQDYVNAHNAARAQVGVNPVKCDESIAAFARSYANRR-----------------------------YGENLAGSSG 61 (136)
Q Consensus 11 ~~~~~~~il~~hN~~R~~~~m~~L~W~~~La~~A~~~a~~c-----------------------------~Gen~~~~~~ 61 (136)
.+++.+.+++.+|.+|..+++++|+||.+|+..|+.++... .||||+.++.
T Consensus 77 ~~~~~~~~~~~~N~~R~~~~l~~L~~n~~L~~~A~~~a~~m~~~g~~sH~~~~g~~~~~r~~~~g~~~~~agENIa~g~~ 156 (207)
T COG2340 77 LAQFEKAVVAETNQERAKHGLPPLAWNATLAKAARNHARDMAKNGYFSHTSPTGETPADRLKKYGISGATAGENIAYGSN 156 (207)
T ss_pred cchhHHHHHHHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHcCCccccCCCCCCHHHHHHhCCcccccccceeecCCC
Confidence 35677889999999999999999999999999999999988 6777776543
Q ss_pred CCch-hhhhHHhhhhcccCCCCCCCCCCCccchhHHHHHHHhCCeEeEEEEEeC
Q 045858 62 NLSG-SDAVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCN 114 (136)
Q Consensus 62 ~~~~-~~~v~~W~~e~~~y~~~~~~~~~~~~~~~ftq~iw~~~~~vGCa~~~c~ 114 (136)
+. ..+|+.|. .+-||-++|+-+.-+.+|-|+..-.
T Consensus 157 --~~~~~~v~~Wl----------------~S~gH~~nll~~~~~~~Gv~~~~~~ 192 (207)
T COG2340 157 --DPPEAAVDGWL----------------NSPGHRKNLLNPAYTEIGVGVAYDA 192 (207)
T ss_pred --CchHHHHHHhc----------------CChhhhhhccCcchhheeEEEEecC
Confidence 23 68888886 3358889999988999998888644
No 15
>PF11054 Surface_antigen: Sporozoite TA4 surface antigen; InterPro: IPR021288 This family of proteins is a Eukaryotic family of surface antigens. One of the better characterised members of the family is the sporulated TA4 antigen. The TA4 gene encodes a single polypeptide of 25 kDa which contains a 17 and a 8kDa polypeptide [].
Probab=79.94 E-value=16 Score=26.95 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHhcCCCCc-----------ee-CHHHHHHHHHHHhhh---cc-c----------------ceeeec--
Q 045858 15 PQDYVNAHNAARAQVGVNPV-----------KC-DESIAAFARSYANRR---YG-E----------------NLAGSS-- 60 (136)
Q Consensus 15 ~~~il~~hN~~R~~~~m~~L-----------~W-~~~La~~A~~~a~~c---~G-e----------------n~~~~~-- 60 (136)
.-++|+..|..|...+++.. .. +++| .....|.+-| .+ + +.++.+
T Consensus 35 ~~~CL~E~NaaReAAGL~~F~~A~~~~~~Lp~~~~~e~-~~~t~W~~iC~~l~pt~~~~~~~~~~~~pf~~GTyAf~~lt 113 (254)
T PF11054_consen 35 SVECLSEMNAAREAAGLANFTEATSDDQKLPEPGSEEL-TDDTLWKKICEHLIPTQAEPAAEASKLNPFKDGTYAFKSLT 113 (254)
T ss_pred chhHHHHHHHHHHhcCchhhHhhcCCcccCCCCCchhc-cchhhHHHHHHHhcCCCCcchhhccccCcCCCCceEeeecc
Confidence 56799999999999983322 12 3344 5566888888 11 1 112221
Q ss_pred -CCCchhhhhHHhhhhcccCCCCCCCCC------CCccchhHHHHHHHhCCe-EeEEEEEeCCC----------------
Q 045858 61 -GNLSGSDAVGLWVSEKADYDYNSNSCN------AGKVCGHYTHVVWRNSVR-IGCAKVRCNNG---------------- 116 (136)
Q Consensus 61 -~~~~~~~~v~~W~~e~~~y~~~~~~~~------~~~~~~~ftq~iw~~~~~-vGCa~~~c~~~---------------- 116 (136)
+..+..++|++|=.-.++++--.+... +....-.|.-|..+++.. .-|.+..|...
T Consensus 114 ~~~~dCk~aVdYWKaafknF~glPPs~~~~~~lYndqdnVSFVALYNPs~~atAdC~vvTCt~tt~~~~~~~~~~~d~~~ 193 (254)
T PF11054_consen 114 DEKPDCKEAVDYWKAAFKNFTGLPPSKTAANKLYNDQDNVSFVALYNPSSSATADCRVVTCTQTTSNTAGGSRLQGDSDS 193 (254)
T ss_pred CCCCChHHHHHHHHHHHhhcCCCCCChhhccccccCCcceeEEEEeCCCCCCcceeEEEeCCCCCccCCCcccccCCCcc
Confidence 345899999999776666643222221 122244555555555543 45999999641
Q ss_pred ----CEEEEEEccCCCC-CCCCCCC
Q 045858 117 ----GTFVGCNYASPGD-VVGQKPY 136 (136)
Q Consensus 117 ----~~~~vC~Y~p~gn-~~g~~~Y 136 (136)
++-++|.-.|..- ..|..||
T Consensus 194 ~~~~gyAliCkT~P~Al~~~~saPF 218 (254)
T PF11054_consen 194 ESKTGYALICKTMPAALASDGSAPF 218 (254)
T ss_pred cccceEEEEEecCchhhcCCCCCCC
Confidence 4789999998664 5566664
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=59.55 E-value=6 Score=30.11 Aligned_cols=35 Identities=17% Similarity=0.409 Sum_probs=23.4
Q ss_pred HHHHHHhCCeEeEEEEEeCCCCEEEEEEccCCCCCC
Q 045858 96 THVVWRNSVRIGCAKVRCNNGGTFVGCNYASPGDVV 131 (136)
Q Consensus 96 tq~iw~~~~~vGCa~~~c~~~~~~~vC~Y~p~gn~~ 131 (136)
.-+||+.-|.---..-.-+. ..++.|.|+|.||..
T Consensus 78 klIvWDs~TtnK~haipl~s-~WVMtCA~sPSg~~V 112 (343)
T KOG0286|consen 78 KLIVWDSFTTNKVHAIPLPS-SWVMTCAYSPSGNFV 112 (343)
T ss_pred eEEEEEcccccceeEEecCc-eeEEEEEECCCCCeE
Confidence 46788877655443333333 488999999998753
No 17
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=56.69 E-value=11 Score=32.22 Aligned_cols=50 Identities=12% Similarity=0.093 Sum_probs=37.8
Q ss_pred cccccCCCCchHHHHHHHHHHHHHhcC----------------------CCCceeCHHHHHHHHHHHhhhccc
Q 045858 4 ALALPSRAQDLPQDYVNAHNAARAQVG----------------------VNPVKCDESIAAFARSYANRRYGE 54 (136)
Q Consensus 4 ~~~~~~~~~~~~~~il~~hN~~R~~~~----------------------m~~L~W~~~La~~A~~~a~~c~Ge 54 (136)
+-..+...-.+|+++|+.+|.-+.... |-.|-||..|++.|+...-+ +||
T Consensus 774 ~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR-~GQ 845 (901)
T KOG4439|consen 774 TSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYR-MGQ 845 (901)
T ss_pred eeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHH-hcc
Confidence 345566677889999999999776321 67889999999999875543 455
No 18
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=34.96 E-value=39 Score=18.97 Aligned_cols=16 Identities=19% Similarity=0.013 Sum_probs=13.5
Q ss_pred ceeCHHHHHHHHHHHh
Q 045858 34 VKCDESIAAFARSYAN 49 (136)
Q Consensus 34 L~W~~~La~~A~~~a~ 49 (136)
|+|+..-++.|+..|.
T Consensus 1 l~Wt~~Aa~eAeavAa 16 (56)
T PF04863_consen 1 LSWTLRAAEEAEAVAA 16 (56)
T ss_dssp -STTHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHhhc
Confidence 6899999999999875
No 19
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=32.27 E-value=50 Score=18.92 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=15.4
Q ss_pred chHHHHHHHHHHHHHhcC
Q 045858 13 DLPQDYVNAHNAARAQVG 30 (136)
Q Consensus 13 ~~~~~il~~hN~~R~~~~ 30 (136)
+..+++++..|.+|+.-+
T Consensus 24 ~~Pe~Vi~iIN~lR~keG 41 (63)
T PF03295_consen 24 EDPEEVINIINELRNKEG 41 (63)
T ss_pred cCHHHHHHHHHHhhhccC
Confidence 356889999999999876
No 20
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=30.58 E-value=32 Score=24.05 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=27.2
Q ss_pred cccccccCCCCchHHHHHHHHHHHHHhcC--CCCc
Q 045858 2 GLALALPSRAQDLPQDYVNAHNAARAQVG--VNPV 34 (136)
Q Consensus 2 ~~~~~~~~~~~~~~~~il~~hN~~R~~~~--m~~L 34 (136)
+++|..+..+..+|..+|+..|.|+..+. +.||
T Consensus 66 ~ILL~~A~~T~~ERR~~~~~l~~y~~~~P~~vRPL 100 (179)
T PF13942_consen 66 SILLANAEPTPAERRQMVDRLNSYSLQFPASVRPL 100 (179)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhhhhcCHHHhHH
Confidence 35677788888999999999999999887 4454
No 21
>COG1318 Predicted transcriptional regulators [Transcription]
Probab=30.36 E-value=42 Score=23.55 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=18.2
Q ss_pred CCCceeCHHHHHHHHHHHhhh
Q 045858 31 VNPVKCDESIAAFARSYANRR 51 (136)
Q Consensus 31 m~~L~W~~~La~~A~~~a~~c 51 (136)
..+|+|.+.||..|-..|+.=
T Consensus 39 ~~~lTWvdSLavAAga~arek 59 (182)
T COG1318 39 YERLTWVDSLAVAAGALAREK 59 (182)
T ss_pred ccccchhhHHHHHHHHHHHHH
Confidence 668999999999999888744
No 22
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=23.91 E-value=83 Score=16.31 Aligned_cols=21 Identities=14% Similarity=0.407 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHhcCCCCc
Q 045858 14 LPQDYVNAHNAARAQVGVNPV 34 (136)
Q Consensus 14 ~~~~il~~hN~~R~~~~m~~L 34 (136)
-|.+||..|=+++...+-.++
T Consensus 18 RRk~IL~k~PeIk~L~G~dp~ 38 (39)
T PF08557_consen 18 RRKEILKKHPEIKKLMGPDPL 38 (39)
T ss_pred HHHHHHHhChHHHHHhCCCCC
Confidence 478899999999998875554
No 23
>PF11903 DUF3423: Protein of unknown function (DUF3423); InterPro: IPR021831 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 73 to 118 amino acids in length.
Probab=21.28 E-value=1.2e+02 Score=17.88 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=17.0
Q ss_pred CCCceeCHHHHHHHHHHHh
Q 045858 31 VNPVKCDESIAAFARSYAN 49 (136)
Q Consensus 31 m~~L~W~~~La~~A~~~a~ 49 (136)
|.+++-|++|-+.|+.++.
T Consensus 1 ~~~vri~~~L~~~ar~~a~ 19 (72)
T PF11903_consen 1 MGSVRISDELHDQARAEAA 19 (72)
T ss_pred CCCeeeCHHHHHHHHHHHH
Confidence 6788899999999999887
No 24
>PF13983 YsaB: YsaB-like lipoprotein
Probab=20.44 E-value=69 Score=18.89 Aligned_cols=14 Identities=14% Similarity=0.373 Sum_probs=10.9
Q ss_pred CEEEEEEccCCCCC
Q 045858 117 GTFVGCNYASPGDV 130 (136)
Q Consensus 117 ~~~~vC~Y~p~gn~ 130 (136)
+.-+||-|+|.|-.
T Consensus 58 ~E~FvCSFD~dGqF 71 (77)
T PF13983_consen 58 KEGFVCSFDADGQF 71 (77)
T ss_pred ccceEEeECCCCcE
Confidence 56799999997743
Done!