BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045860
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 132 bits (333), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 89/146 (60%), Gaps = 3/146 (2%)
Query: 10 SCGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESR 69
+ KYD FLSFRG DTR FI +LY L + I F+DDK+LE G SP L I+ SR
Sbjct: 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSR 64
Query: 70 ISIIVLSKNYASSTWCLDELLKITECKNRED-QIFPIFYGVEPTVVRKQTXXXXXXXXXX 128
+++V+S+NYA+S+WCLDEL+ I + + + + PIFYGVEP VR QT
Sbjct: 65 FAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQT--GVLAEQFK 122
Query: 129 XXXXRDNIEKVQKWRHALKVVANISG 154
R++ EKV KWR AL A +SG
Sbjct: 123 KHASREDPEKVLKWRQALTNFAQLSG 148
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 119 bits (298), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 87/147 (59%), Gaps = 4/147 (2%)
Query: 13 KYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISI 72
+Y+ FLSFRG DTR+ F +LY +L I+ FRDD +L KG I PNLL+AID+S+I +
Sbjct: 35 EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 73 IVLSKNYASSTWCLDELLKITECKNREDQ--IFPIFYGVEPTVVRKQTXXXXXXXXXXXX 130
++S YA S WCL EL +I + + + I PIFY V+P+ VR QT
Sbjct: 95 PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154
Query: 131 XXRDNIEKVQKWRHALKVVANISGWEL 157
+ + +Q W+ ALK V ++ GW +
Sbjct: 155 KF--DGQTIQNWKDALKKVGDLKGWHI 179
>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1
Length = 161
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 13 KYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISI 72
++ AF+S+ G D+ L L +G + ++ G SI N++ I++S SI
Sbjct: 12 QFHAFISYSGHDSF-WVKNELLPNLEKEGXQICLHERNFVPGKSIVENIITCIEKSYKSI 70
Query: 73 IVLSKNYASSTWCLDEL 89
VLS N+ S WC EL
Sbjct: 71 FVLSPNFVQSEWCHYEL 87
>pdb|2J67|A Chain A, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
pdb|2J67|B Chain B, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
Length = 178
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 1 MATTSFQNISCGKYDAFLSFRGEDT---RKGFIGYLYTALNNKGIYVFRDDKQLEKGGSI 57
M TT Q ++ AF+S+ D+ + I L + I + + + G SI
Sbjct: 23 MKTTQEQLKRNVRFHAFISYSEHDSLWVKNELIPNL--EKEDGSILICLYESYFDPGKSI 80
Query: 58 SPNLLKAIDESRISIIVLSKNYASSTWCLDEL 89
S N++ I++S SI VLS N+ + WC E
Sbjct: 81 SENIVSFIEKSYKSIFVLSPNFVQNEWCHYEF 112
>pdb|3UB4|A Chain A, S180l Variant Of Tir Domain Of MalTIRAP
Length = 146
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 14 YDAFLSFRGED--TRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRIS 71
YD + ED + + YL + + F + GG+I L +A+ S
Sbjct: 11 YDVCVCHSEEDLVAAQDLVSYLEG--STASLRCFLQLRDATPGGAIVSELCQALSSSHCR 68
Query: 72 IIVLSKNYASSTWCLDELLK-ITECKNREDQIFPIFYGV 109
+++++ + WC ++L+ +TE E P+ G+
Sbjct: 69 VLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLLGL 107
>pdb|2Y92|A Chain A, Crystal Structure Of Mal Adaptor Protein
Length = 145
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 14 YDAFLSFRGED--TRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRIS 71
YD + ED + + YL + + F + GG+I L +A+ S
Sbjct: 10 YDVCVCHSEEDLVAAQDLVSYLEG--STASLRCFLQLRDATPGGAIVSELCQALSSSHCR 67
Query: 72 IIVLSKNYASSTWCLDELLK-ITECKNREDQIFPIFYGV 109
+++++ + WC ++L+ +TE E P+ G+
Sbjct: 68 VLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGL 106
>pdb|3UB2|A Chain A, Tir Domain Of MalTIRAP
Length = 146
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 14 YDAFLSFRGED--TRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRIS 71
YD + ED + + YL + + F + GG+I L +A+ S
Sbjct: 11 YDVCVCHSEEDLVAAQDLVSYLEG--STASLRCFLQLRDATPGGAIVSELCQALSSSHCR 68
Query: 72 IIVLSKNYASSTWCLDELLK-ITECKNREDQIFPIFYGV 109
+++++ + WC ++L+ +TE E P+ G+
Sbjct: 69 VLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGL 107
>pdb|3UB3|A Chain A, D96n Variant Of Tir Domain Of MalTIRAP
Length = 146
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 34 YTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTWCLDELLK-I 92
Y + + F + GG+I L +A+ S +++++ + WC ++L+ +
Sbjct: 31 YLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQAL 90
Query: 93 TECKNREDQIFPIFYGV 109
TE E P+ G+
Sbjct: 91 TEAPGAEGCTIPLLSGL 107
>pdb|1FYW|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr2
Length = 149
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 14 YDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLE-------KGGSISPNLLKAID 66
YDAF+S+ D Y L + + F +L G I N++ +I+
Sbjct: 6 YDAFVSYSERD------AYWVENLXVQELENFNPPFKLXLHKRDFIPGKWIIDNIIDSIE 59
Query: 67 ESRISIIVLSKNYASSTWCLDEL 89
+S ++ VLS+N+ S W EL
Sbjct: 60 KSHKTVFVLSENFVKSEWXKYEL 82
>pdb|1FYX|A Chain A, Crystal Structure Of P681h Mutant Of Tir Domain Of Human
Tlr2
Length = 149
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 14 YDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLE-------KGGSISPNLLKAID 66
YDAF+S+ D Y L + + F +L G I N++ +I+
Sbjct: 6 YDAFVSYSERD------AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIE 59
Query: 67 ESRISIIVLSKNYASSTWCLDEL 89
+S ++ VLS+N+ S W EL
Sbjct: 60 KSHKTVFVLSENFVKSEWXKYEL 82
>pdb|1O77|A Chain A, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|B Chain B, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|C Chain C, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|D Chain D, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|E Chain E, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
Length = 146
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 54 GGSISPNLLKAIDESRISIIVLSKNYASSTWCLDEL 89
G I N++ +I++S ++ VLS+N+ S W EL
Sbjct: 44 GKWIIDNIIDSIEKSHKTVFVLSENFVKSEWSKYEL 79
>pdb|1T3G|A Chain A, Crystal Structure Of The TollINTERLEUKIN-1 Receptor
(Tir) Domain Of Human Il-1rapl
pdb|1T3G|B Chain B, Crystal Structure Of The TollINTERLEUKIN-1 Receptor
(Tir) Domain Of Human Il-1rapl
Length = 159
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 14 YDAFLSFR-----------GEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLL 62
YDA+LS+ GE+ R + G +F D+ L G+ ++
Sbjct: 3 YDAYLSYTKVDPDQWNQETGEEERFALEILPDXLEKHYGYKLFIPDRDLIPTGTYIEDVA 62
Query: 63 KAIDESRISIIVLSKNY-ASSTWCLDEL 89
+ +D+S+ IIV + NY W + EL
Sbjct: 63 RCVDQSKRLIIVXTPNYVVRRGWSIFEL 90
>pdb|2DIE|A Chain A, Alkaline Alpha-Amylase Amyk From Bacillus Sp. Ksm-1378
Length = 485
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
Query: 4 TSFQNISCGKYDAFLSFRGEDTRKGFIGYLY----------TALNNKGIYVFRDDKQLEK 53
TS ++ G YD L GE +KG + Y T+L N GI V+ D K
Sbjct: 51 TSQNDVGYGAYD--LYDLGEFNQKGTVRTKYGTRSQLQGAVTSLKNNGIQVYGDVVMNHK 108
Query: 54 GGSISPNLLKAIDESR 69
GG+ ++ A++ +R
Sbjct: 109 GGADGTEMVNAVEVNR 124
>pdb|1MJF|A Chain A, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
pdb|1MJF|B Chain B, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
Length = 281
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 29 FIGYLYTALNNKGIYV 44
F Y+Y ALNN GIYV
Sbjct: 175 FYRYVYDALNNPGIYV 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,222,144
Number of Sequences: 62578
Number of extensions: 146998
Number of successful extensions: 364
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 15
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)