Query 045860
Match_columns 160
No_of_seqs 142 out of 1367
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 10:38:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045860.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045860hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 9.4E-52 3.2E-56 312.8 12.5 154 5-160 27-182 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 1E-50 3.4E-55 302.0 11.7 148 9-158 4-152 (176)
3 3h16_A TIR protein; bacteria T 100.0 7.5E-36 2.6E-40 218.1 0.8 119 8-127 15-134 (154)
4 3ub2_A TOLL/interleukin-1 rece 100.0 1.4E-32 4.7E-37 199.4 -2.1 133 5-146 2-145 (146)
5 2js7_A Myeloid differentiation 99.9 7.9E-28 2.7E-32 176.7 4.1 102 8-111 11-117 (160)
6 1t3g_A X-linked interleukin-1 99.9 3E-27 1E-31 173.4 6.3 102 12-113 1-116 (159)
7 2j67_A TOLL like receptor 10; 99.9 5.7E-28 2E-32 180.2 2.4 103 7-111 29-136 (178)
8 1fyx_A TOLL-like receptor 2; b 99.9 3.1E-28 1.1E-32 176.9 0.5 104 10-115 2-111 (149)
9 3j0a_A TOLL-like receptor 5; m 99.8 1.1E-21 3.7E-26 174.5 6.4 103 8-112 665-775 (844)
10 1eiw_A Hypothetical protein MT 98.4 1.3E-07 4.4E-12 64.8 3.8 73 12-107 3-75 (111)
11 3hyn_A Putative signal transdu 97.8 6.1E-05 2.1E-09 55.5 7.3 78 28-108 32-118 (189)
12 2f62_A Nucleoside 2-deoxyribos 94.2 0.55 1.9E-05 33.6 9.6 73 28-106 27-105 (161)
13 2khz_A C-MYC-responsive protei 87.7 5.7 0.00019 28.1 9.5 87 12-106 10-110 (165)
14 4fyk_A Deoxyribonucleoside 5'- 87.1 5.3 0.00018 28.2 8.7 86 15-107 4-102 (152)
15 3ehd_A Uncharacterized conserv 83.3 8.6 0.0003 27.3 8.4 77 28-108 20-106 (162)
16 1s2d_A Purine trans deoxyribos 69.4 27 0.00093 24.7 8.0 86 15-106 9-116 (167)
17 1v95_A Nuclear receptor coacti 65.3 30 0.001 23.6 7.4 57 14-74 9-67 (130)
18 2yvq_A Carbamoyl-phosphate syn 60.4 8.2 0.00028 26.6 3.4 62 16-79 27-106 (143)
19 2jug_A TUBC protein; docking d 59.6 7.3 0.00025 23.9 2.8 38 30-67 7-47 (78)
20 1byr_A Protein (endonuclease); 55.5 32 0.0011 23.0 5.9 25 55-79 13-37 (155)
21 1evl_A Threonyl-tRNA synthetas 45.7 60 0.0021 25.8 6.8 58 12-74 297-355 (401)
22 1wu7_A Histidyl-tRNA synthetas 42.7 81 0.0028 25.3 7.2 57 13-74 332-389 (434)
23 3net_A Histidyl-tRNA synthetas 42.0 44 0.0015 27.4 5.6 59 12-76 370-429 (465)
24 2i4l_A Proline-tRNA ligase; al 38.8 25 0.00086 28.8 3.6 58 13-74 365-425 (458)
25 3lc0_A Histidyl-tRNA synthetas 38.3 61 0.0021 26.6 5.9 60 12-76 360-419 (456)
26 1nj1_A PROR, proline-tRNA synt 36.7 29 0.001 28.9 3.7 59 12-74 313-376 (501)
27 4g84_A Histidine--tRNA ligase, 35.7 90 0.0031 25.1 6.5 60 11-74 364-424 (464)
28 1htt_A Histidyl-tRNA synthetas 34.9 74 0.0025 25.4 5.8 58 12-74 326-386 (423)
29 4g85_A Histidine-tRNA ligase, 34.5 1.1E+02 0.0038 25.2 6.9 60 11-74 417-477 (517)
30 4a6h_A Phosphatidylinositol 4, 33.4 28 0.00097 23.0 2.6 20 134-153 101-120 (120)
31 1hc7_A Prolyl-tRNA synthetase; 30.1 46 0.0016 27.5 3.8 59 12-74 286-350 (477)
32 1qe0_A Histidyl-tRNA synthetas 30.1 60 0.0021 25.8 4.5 58 12-74 328-386 (420)
33 3pid_A UDP-glucose 6-dehydroge 29.8 41 0.0014 27.6 3.4 51 22-72 346-400 (432)
34 3hly_A Flavodoxin-like domain; 29.0 1.3E+02 0.0046 20.2 8.3 51 27-82 15-65 (161)
35 1tu9_A Hypothetical protein PA 28.3 41 0.0014 22.2 2.7 41 108-152 85-127 (134)
36 2l82_A Designed protein OR32; 28.1 1.3E+02 0.0046 19.9 5.6 81 57-154 64-157 (162)
37 1nyr_A Threonyl-tRNA synthetas 28.1 1E+02 0.0035 26.3 5.8 58 13-74 545-603 (645)
38 1sct_A Hemoglobin II (carbonmo 27.5 92 0.0031 20.9 4.5 45 107-152 105-149 (150)
39 1bax_A M-PMV MA, M-PMV matrix 27.5 34 0.0011 22.1 2.0 19 27-45 9-27 (94)
40 3ubc_A Hemoglobin-like flavopr 27.3 83 0.0028 20.5 4.2 45 107-152 84-128 (131)
41 2i2x_B MTAC, methyltransferase 27.1 1.2E+02 0.0042 22.5 5.5 85 15-109 125-211 (258)
42 2pw6_A Uncharacterized protein 27.0 63 0.0021 24.6 3.9 75 27-105 95-170 (271)
43 4e51_A Histidine--tRNA ligase; 27.0 98 0.0034 25.3 5.3 62 12-74 353-415 (467)
44 2j3l_A Prolyl-tRNA synthetase; 26.9 1E+02 0.0035 25.7 5.5 61 13-78 470-533 (572)
45 2coc_A FYVE, rhogef and PH dom 26.6 46 0.0016 21.6 2.7 18 134-151 89-106 (112)
46 1v5p_A Pleckstrin homology dom 26.5 46 0.0016 22.0 2.7 20 134-153 103-122 (126)
47 2zt5_A Glycyl-tRNA synthetase; 26.4 1.6E+02 0.0055 25.6 6.7 58 13-74 559-618 (693)
48 2yry_A Pleckstrin homology dom 25.4 51 0.0017 20.8 2.7 18 135-152 104-121 (122)
49 2cof_A Protein KIAA1914; PH do 24.6 55 0.0019 20.4 2.7 18 135-152 85-102 (107)
50 1sc3_B Interleukin-1 beta conv 24.6 20 0.0007 22.5 0.6 24 17-40 21-44 (88)
51 1cg5_A Protein (hemoglobin); o 24.6 58 0.002 21.8 3.0 42 107-152 92-135 (141)
52 2ql9_B Caspase-7; cysteine pro 24.6 16 0.00054 23.4 -0.0 28 13-40 10-46 (97)
53 1egw_A MADS box transcription 24.3 16 0.00055 22.6 0.0 32 64-95 36-67 (77)
54 4a7p_A UDP-glucose dehydrogena 24.2 79 0.0027 25.9 4.2 54 22-75 336-396 (446)
55 3ikl_A DNA polymerase subunit 23.9 1.6E+02 0.0056 24.3 6.0 53 24-81 361-417 (459)
56 2hfv_A Hypothetical protein RP 23.8 50 0.0017 21.3 2.3 30 20-51 27-56 (97)
57 3ro3_B Minsc, peptide of prote 23.6 65 0.0022 14.8 2.0 13 137-149 8-20 (22)
58 1qtn_B Caspase-8; apoptosis, d 23.5 15 0.0005 23.5 -0.3 27 13-39 12-47 (95)
59 4hde_A SCO1/SENC family lipopr 23.3 1.3E+02 0.0043 20.4 4.7 30 83-112 46-79 (170)
60 1qf6_A THRRS, threonyl-tRNA sy 23.2 1.8E+02 0.0061 24.9 6.4 60 13-78 539-599 (642)
61 3p57_A Myocyte-specific enhanc 23.2 23 0.00078 22.7 0.6 32 64-95 36-67 (90)
62 1wmu_A Hemoglobin D alpha chai 23.0 89 0.003 20.7 3.7 45 107-152 91-135 (141)
63 1f8y_A Nucleoside 2-deoxyribos 22.5 1.9E+02 0.0067 19.8 5.9 75 28-106 19-113 (157)
64 1sct_B Hemoglobin II (carbonmo 22.2 1.4E+02 0.0048 19.9 4.6 45 107-152 106-150 (151)
65 1dlj_A UDP-glucose dehydrogena 22.1 1.6E+02 0.0053 23.4 5.5 52 22-73 323-379 (402)
66 3ojo_A CAP5O; rossmann fold, c 21.8 1.2E+02 0.004 24.7 4.7 53 22-75 329-382 (431)
67 2nrl_A Myoglobin; transport pr 21.8 97 0.0033 20.8 3.7 43 107-152 93-135 (147)
68 2dko_B Caspase-3; low barrier 21.6 19 0.00066 23.3 -0.0 29 12-40 15-52 (103)
69 3g46_A Globin-1; oxygen transp 21.2 97 0.0033 20.7 3.6 41 107-151 104-144 (146)
70 2vhb_A Hemoglobin; heme, respi 21.2 1.3E+02 0.0044 19.9 4.2 45 107-152 88-132 (146)
71 2wy4_A Single domain haemoglob 21.1 87 0.003 20.5 3.3 42 108-152 88-129 (140)
72 1x46_A Globin chain, hemoglobi 21.1 71 0.0024 21.4 2.9 41 108-152 103-145 (150)
73 3bom_B Hemoglobin subunit beta 21.0 1.3E+02 0.0046 20.1 4.3 46 107-152 96-141 (147)
74 1h4v_B Histidyl-tRNA synthetas 20.9 2.2E+02 0.0075 22.5 6.2 57 12-74 327-384 (421)
75 2w72_B Human hemoglobin A; iro 20.7 1.4E+02 0.0047 19.9 4.3 45 107-152 96-140 (146)
76 4hrt_B Hemoglobin B chain; oxy 20.6 1.7E+02 0.0058 19.6 4.8 44 107-151 107-150 (152)
77 1pyo_B Caspase-2; apoptosis, c 20.6 21 0.00072 23.2 -0.0 28 13-40 14-50 (105)
78 3n75_A LDC, lysine decarboxyla 20.6 2E+02 0.0069 25.0 6.2 63 29-107 18-81 (715)
79 2r80_B Hemoglobin subunit beta 20.4 1.4E+02 0.0048 19.8 4.3 45 107-152 96-140 (146)
80 2w72_C Human hemoglobin A; iro 20.4 72 0.0024 21.2 2.7 42 107-152 91-135 (141)
81 3ftb_A Histidinol-phosphate am 20.4 2.5E+02 0.0084 20.9 6.2 59 35-95 113-172 (361)
82 4ggj_A Mitochondrial cardiolip 20.3 2.3E+02 0.0079 19.9 5.7 11 31-41 49-59 (196)
83 3kkq_A RAS-related protein M-R 20.3 1.9E+02 0.0066 19.0 8.9 28 53-80 74-102 (183)
84 3hjn_A DTMP kinase, thymidylat 20.3 1.5E+02 0.005 20.9 4.6 31 17-47 2-34 (197)
85 2h1v_A Ferrochelatase; rossman 20.2 2.2E+02 0.0075 21.8 5.9 49 30-81 64-119 (310)
86 2uvp_A HOBA; hypothetical prot 20.2 18 0.00061 26.3 -0.4 74 27-106 8-89 (186)
87 1z0f_A RAB14, member RAS oncog 20.1 1.9E+02 0.0065 18.8 6.6 28 53-80 72-100 (179)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=9.4e-52 Score=312.78 Aligned_cols=154 Identities=42% Similarity=0.777 Sum_probs=141.1
Q ss_pred CCCCCCCCcccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCCChh
Q 045860 5 SFQNISCGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTW 84 (160)
Q Consensus 5 ss~~~~~~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~S~w 84 (160)
||++.+.++|||||||+++|+++.|+.+|+++|+++||++|+|++++.+|+.|.++|.++|++|+++|+|||++|+.|.|
T Consensus 27 ~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~W 106 (204)
T 3ozi_A 27 PSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKW 106 (204)
T ss_dssp -------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHH
T ss_pred CcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcH
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-hh-cCCceeeEEeccCchhhhcccchHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcccceeccCC
Q 045860 85 CLDELLKITEC-KN-REDQIFPIFYGVEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKVVANISGWELKDR 160 (160)
Q Consensus 85 c~~El~~~~~~-~~-~~~~iiPVf~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~g~~~~~~ 160 (160)
|++||..+++| ++ .+++||||||+|+|++||+|+|.||++|.++.+.+. ++++++||.||++|++++||++.++
T Consensus 107 Cl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~ 182 (204)
T 3ozi_A 107 CLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKN 182 (204)
T ss_dssp HHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTT
T ss_pred HHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCC
Confidence 99999999999 54 678999999999999999999999999999998874 6899999999999999999999764
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1e-50 Score=302.03 Aligned_cols=148 Identities=48% Similarity=0.814 Sum_probs=126.6
Q ss_pred CCCCcccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCCChhHHHH
Q 045860 9 ISCGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTWCLDE 88 (160)
Q Consensus 9 ~~~~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~S~wc~~E 88 (160)
+..+.|||||||+++|+++.|+++|+++|+++||++|+|++++.+|+.+.++|.++|++|+++|+|+|++|++|.||++|
T Consensus 4 s~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E 83 (176)
T 3jrn_A 4 HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDE 83 (176)
T ss_dssp ---CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred CCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence 34678999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-hhcCCceeeEEeccCchhhhcccchHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcccceecc
Q 045860 89 LLKITEC-KNREDQIFPIFYGVEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKVVANISGWELK 158 (160)
Q Consensus 89 l~~~~~~-~~~~~~iiPVf~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~g~~~~ 158 (160)
|..+++| +..+++||||||+|+|++||+|+|.||++|.++.++ .+++++++||.||++|++++||++.
T Consensus 84 L~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~ 152 (176)
T 3jrn_A 84 LVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG 152 (176)
T ss_dssp HHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred HHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence 9999999 888999999999999999999999999999999987 4589999999999999999999984
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=100.00 E-value=7.5e-36 Score=218.11 Aligned_cols=119 Identities=27% Similarity=0.386 Sum_probs=110.0
Q ss_pred CCCCCcccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCCChhHHH
Q 045860 8 NISCGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTWCLD 87 (160)
Q Consensus 8 ~~~~~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~S~wc~~ 87 (160)
..+.++|||||||+++| +..|+.+|+.+|+++|+++|+|.+++.+|+.|.++|.++|++|+++|+|+|++|+.|.||+.
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 35578999999999999 45799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hhcCCceeeEEeccCchhhhcccchHHHHHHH
Q 045860 88 ELLKITEC-KNREDQIFPIFYGVEPTVVRKQTASFGEAFAE 127 (160)
Q Consensus 88 El~~~~~~-~~~~~~iiPVf~~v~p~~v~~~~~~f~~~f~~ 127 (160)
|+..++++ ...+++||||||+++|++|++|.|.|++.|..
T Consensus 94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~ 134 (154)
T 3h16_A 94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAF 134 (154)
T ss_dssp HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCE
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhh
Confidence 99999999 77788999999999999999999999977653
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.97 E-value=1.4e-32 Score=199.35 Aligned_cols=133 Identities=17% Similarity=0.291 Sum_probs=93.2
Q ss_pred CCCCCCCCcccEEEecccCCCcchHHHHHHHHHhc--CCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCCC
Q 045860 5 SFQNISCGKYDAFLSFRGEDTRKGFIGYLYTALNN--KGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASS 82 (160)
Q Consensus 5 ss~~~~~~~~dVFISy~~~D~~~~fv~~L~~~L~~--~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~S 82 (160)
|.|...++.|||||||+++|. .||.+|.++|++ .|+++|++++|+.+|+.+.++|.++|++|+++|+|+|++|++|
T Consensus 2 ~~~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S 79 (146)
T 3ub2_A 2 PGSSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQD 79 (146)
T ss_dssp --CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHC
T ss_pred CCCCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccC
Confidence 455667889999999999997 568999999999 5999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHH-hhcCCceeeEEeccCchhhhcccc----h----HHHHHHHHHHhhcCCHHHHHHHHHHH
Q 045860 83 TWCLDELLKITEC-KNREDQIFPIFYGVEPTVVRKQTA----S----FGEAFAEHEEFFRDNIEKVQKWRHAL 146 (160)
Q Consensus 83 ~wc~~El~~~~~~-~~~~~~iiPVf~~v~p~~v~~~~~----~----f~~~f~~~~~~~~~~~~~~~~W~~al 146 (160)
.||+.|+..|+++ .....+||||||++++.++....+ . ....|.++ .+.+.+|++||
T Consensus 80 ~wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l-------~~~v~~~~~~~ 145 (146)
T 3ub2_A 80 PWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQV-------KEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHH-------HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHH-------HHHHHHHHHhc
Confidence 9999999999998 444458889999988666543221 1 12333333 36688898875
No 5
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.94 E-value=7.9e-28 Score=176.72 Aligned_cols=102 Identities=18% Similarity=0.278 Sum_probs=92.7
Q ss_pred CCCCCcccEEEecccCCCcchHHHHHHHHHhcC--CcEEEEeCCCCCCCCCchHHHHHHHH-hcceEEEEeecCCCCChh
Q 045860 8 NISCGKYDAFLSFRGEDTRKGFIGYLYTALNNK--GIYVFRDDKQLEKGGSISPNLLKAID-ESRISIIVLSKNYASSTW 84 (160)
Q Consensus 8 ~~~~~~~dVFISy~~~D~~~~fv~~L~~~L~~~--gi~v~~d~~d~~~G~~~~~~i~~~I~-~S~~~ivvlS~~~~~S~w 84 (160)
.+.++.|||||||+++|. .||.+|.++|++. |+++|++++|+.+|..+.++|.++|+ +|+++|+|+|++|++|.|
T Consensus 11 ~~~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w 88 (160)
T 2js7_A 11 GHMPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE 88 (160)
T ss_dssp SCCTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred CCCCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence 344678999999999994 7999999999985 69999999999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHH--hhcCCceeeEEeccCc
Q 045860 85 CLDELLKITEC--KNREDQIFPIFYGVEP 111 (160)
Q Consensus 85 c~~El~~~~~~--~~~~~~iiPVf~~v~p 111 (160)
|+.|+..|+++ .+.+++||||+|+..+
T Consensus 89 c~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 89 CDFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 99999999998 4556799999997654
No 6
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.94 E-value=3e-27 Score=173.44 Aligned_cols=102 Identities=25% Similarity=0.364 Sum_probs=90.7
Q ss_pred CcccEEEecccCCCc---------chHHHHHHH-HHh-cCCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCC
Q 045860 12 GKYDAFLSFRGEDTR---------KGFIGYLYT-ALN-NKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYA 80 (160)
Q Consensus 12 ~~~dVFISy~~~D~~---------~~fv~~L~~-~L~-~~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~ 80 (160)
+.|||||||+++|.+ ..||.+|.. .|+ +.|+++|++++|+.+|..+.++|.++|++|+++|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 479999999999973 568888665 699 689999999999999999999999999999999999999997
Q ss_pred -CChhHHHHHHHHHHH--hhcCCceeeEEeccCchh
Q 045860 81 -SSTWCLDELLKITEC--KNREDQIFPIFYGVEPTV 113 (160)
Q Consensus 81 -~S~wc~~El~~~~~~--~~~~~~iiPVf~~v~p~~ 113 (160)
.|.||..|+..|+++ .+++.+||||+++..+..
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~~ 116 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRGI 116 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCSH
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccccc
Confidence 999999999999998 667789999999866643
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.94 E-value=5.7e-28 Score=180.25 Aligned_cols=103 Identities=27% Similarity=0.427 Sum_probs=89.5
Q ss_pred CCCCCCcccEEEecccCCCcchHHHH-HHHHHhc--CCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCCCh
Q 045860 7 QNISCGKYDAFLSFRGEDTRKGFIGY-LYTALNN--KGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASST 83 (160)
Q Consensus 7 ~~~~~~~~dVFISy~~~D~~~~fv~~-L~~~L~~--~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~S~ 83 (160)
....++.|||||||+++|. .||.+ |.++|++ .|+++|++++|+.+|..+.++|.++|++|+++|+|+|++|+.|.
T Consensus 29 ~~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~ 106 (178)
T 2j67_A 29 QLKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNE 106 (178)
T ss_dssp -CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHT
T ss_pred ccCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccc
Confidence 3567789999999999996 78976 9999998 79999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH--hhcCCceeeEEeccCc
Q 045860 84 WCLDELLKITEC--KNREDQIFPIFYGVEP 111 (160)
Q Consensus 84 wc~~El~~~~~~--~~~~~~iiPVf~~v~p 111 (160)
||+.|+..|+++ .+.+++||||||+..|
T Consensus 107 wc~~El~~a~~~~~~~~~~~vIpV~~~~i~ 136 (178)
T 2j67_A 107 WCHYEFYFAHHNLFHENSDHIILILLEPIP 136 (178)
T ss_dssp GGGTHHHHTTCC-------CEEEEESSCCC
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEEEecCCC
Confidence 999999999976 5667899999997544
No 8
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.94 E-value=3.1e-28 Score=176.92 Aligned_cols=104 Identities=23% Similarity=0.349 Sum_probs=93.5
Q ss_pred CCCcccEEEecccCCCcchHHHH-HHHHHhcC--CcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCCChhHH
Q 045860 10 SCGKYDAFLSFRGEDTRKGFIGY-LYTALNNK--GIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTWCL 86 (160)
Q Consensus 10 ~~~~~dVFISy~~~D~~~~fv~~-L~~~L~~~--gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~S~wc~ 86 (160)
.++.|||||||+++|. .||.+ |.++|++. |+++|+|++|+.+|..+.++|.++|++|+++|+|+|++|+.|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4678999999999997 78997 99999986 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH--hhcCCceeeEEec-cCchhhh
Q 045860 87 DELLKITEC--KNREDQIFPIFYG-VEPTVVR 115 (160)
Q Consensus 87 ~El~~~~~~--~~~~~~iiPVf~~-v~p~~v~ 115 (160)
.|+..|+++ .+.+++||||+|+ +.+..+.
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p 111 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP 111 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence 999999965 6677899999996 4444443
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=1.1e-21 Score=174.52 Aligned_cols=103 Identities=19% Similarity=0.371 Sum_probs=93.5
Q ss_pred CCCCCcccEEEecccCCCcchHH-HHHHHHHhc-----CCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCC
Q 045860 8 NISCGKYDAFLSFRGEDTRKGFI-GYLYTALNN-----KGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYAS 81 (160)
Q Consensus 8 ~~~~~~~dVFISy~~~D~~~~fv-~~L~~~L~~-----~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~ 81 (160)
...++.|||||||+++|. .|| ..|.+.||+ .|+++|+++||+.||+.+.++|.++|++||++|+|+|++|+.
T Consensus 665 ~~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~ 742 (844)
T 3j0a_A 665 EPDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLR 742 (844)
T ss_dssp SSSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHH
T ss_pred cccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEecccccc
Confidence 345789999999999997 566 569999996 489999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHH--hhcCCceeeEEeccCch
Q 045860 82 STWCLDELLKITEC--KNREDQIFPIFYGVEPT 112 (160)
Q Consensus 82 S~wc~~El~~~~~~--~~~~~~iiPVf~~v~p~ 112 (160)
|+||+.|+..|+++ .+.+++||||||+..|.
T Consensus 743 s~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~ 775 (844)
T 3j0a_A 743 DGWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ 775 (844)
T ss_dssp HTSTTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred ChHHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence 99999999999988 67788999999986654
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.45 E-value=1.3e-07 Score=64.81 Aligned_cols=73 Identities=7% Similarity=0.028 Sum_probs=57.5
Q ss_pred CcccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCCChhHHHHHHH
Q 045860 12 GKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTWCLDELLK 91 (160)
Q Consensus 12 ~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~S~wc~~El~~ 91 (160)
..|.+||||+.+| . .+.|...|.+.|+... | +.|+.|+++|++.++...+|+||.+|+..
T Consensus 3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~~-~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEWR-P---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CCEEEEECCCCSH-H---HHHHHHHHHHHCSCEE-E---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred ceEEEEEecccHh-H---HHHHHHHHhCCCCeee-c---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 4689999999998 2 4567777753355333 1 67899999999999999999999999998
Q ss_pred HHHHhhcCCceeeEEe
Q 045860 92 ITECKNREDQIFPIFY 107 (160)
Q Consensus 92 ~~~~~~~~~~iiPVf~ 107 (160)
|.+ .+.+||-|.-
T Consensus 63 A~~---~gkpIigV~~ 75 (111)
T 1eiw_A 63 ARK---SSKPIITVRP 75 (111)
T ss_dssp HTT---TTCCEEEECC
T ss_pred HHH---cCCCEEEEEc
Confidence 776 5777777763
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=97.81 E-value=6.1e-05 Score=55.51 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=60.0
Q ss_pred hHHHHHHHHHhcCCcEEEEeCCCCC-------C-CCCchHHHHHHHHhcceEEEEeecCCCCChhHHHHHHHHH-HHhhc
Q 045860 28 GFIGYLYTALNNKGIYVFRDDKQLE-------K-GGSISPNLLKAIDESRISIIVLSKNYASSTWCLDELLKIT-ECKNR 98 (160)
Q Consensus 28 ~fv~~L~~~L~~~gi~v~~d~~d~~-------~-G~~~~~~i~~~I~~S~~~ivvlS~~~~~S~wc~~El~~~~-~~~~~ 98 (160)
...+.|..--.+..+--|.|.++.. . -..|.+.|.+.|..|+.+|+++|++...|.|..+|++.|+ + .
T Consensus 32 ~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~~---~ 108 (189)
T 3hyn_A 32 VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIGT---K 108 (189)
T ss_dssp HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTTT---T
T ss_pred HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHHh---c
Confidence 3455565555555555666765552 2 2457788899999999999999999999999999999998 5 5
Q ss_pred CCceeeEEec
Q 045860 99 EDQIFPIFYG 108 (160)
Q Consensus 99 ~~~iiPVf~~ 108 (160)
+.+||-|..+
T Consensus 109 ~~PII~Vy~~ 118 (189)
T 3hyn_A 109 GLPVIVIYPD 118 (189)
T ss_dssp CCCEEEEETT
T ss_pred CCcEEEEECC
Confidence 7888888876
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=94.15 E-value=0.55 Score=33.60 Aligned_cols=73 Identities=8% Similarity=0.078 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHH----HHHHHhcceEEEEeec--CCCCChhHHHHHHHHHHHhhcCCc
Q 045860 28 GFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNL----LKAIDESRISIIVLSK--NYASSTWCLDELLKITECKNREDQ 101 (160)
Q Consensus 28 ~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i----~~~I~~S~~~ivvlS~--~~~~S~wc~~El~~~~~~~~~~~~ 101 (160)
.+...+...|++.|+.+++-..+ ...+...| .++|++|+++|++++| .-..+.-...|+..|... +++
T Consensus 27 ~~~~~l~~~l~~~G~~v~~P~~~---~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Al---gKP 100 (161)
T 2f62_A 27 SYYNKVRELLKKENVMPLIPTDN---EATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAAL---NKM 100 (161)
T ss_dssp HHHHHHHHHHHTTTCEEECTTTT---CCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHT---TCE
T ss_pred HHHHHHHHHHHHCCCEEECCCcc---CcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHC---CCE
Confidence 56888999999999988873211 11234444 6789999999999996 444566788999988874 666
Q ss_pred eeeEE
Q 045860 102 IFPIF 106 (160)
Q Consensus 102 iiPVf 106 (160)
|+-+.
T Consensus 101 Vi~l~ 105 (161)
T 2f62_A 101 VLTFT 105 (161)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 66654
No 13
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=87.75 E-value=5.7 Score=28.08 Aligned_cols=87 Identities=13% Similarity=0.153 Sum_probs=56.2
Q ss_pred CcccEEEecccC-CC-cchHHHHHHHHHhcCCcEEEEeCCCCC-----CCCC-------chHHHHHHHHhcceEEEEeec
Q 045860 12 GKYDAFLSFRGE-DT-RKGFIGYLYTALNNKGIYVFRDDKQLE-----KGGS-------ISPNLLKAIDESRISIIVLSK 77 (160)
Q Consensus 12 ~~~dVFISy~~~-D~-~~~fv~~L~~~L~~~gi~v~~d~~d~~-----~G~~-------~~~~i~~~I~~S~~~ivvlS~ 77 (160)
+...|||+=.-. +. .......+...|++.| .+..+. ... .|.. +...-.+.|++|+++|++++
T Consensus 10 ~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~-~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~- 86 (165)
T 2khz_A 10 APCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEH-VADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT- 86 (165)
T ss_dssp CCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGG-TTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS-
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-Cccccc-ccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC-
Confidence 345799984322 11 1214577999999999 776443 121 2211 11222478999999999997
Q ss_pred CCCCChhHHHHHHHHHHHhhcCCceeeEE
Q 045860 78 NYASSTWCLDELLKITECKNREDQIFPIF 106 (160)
Q Consensus 78 ~~~~S~wc~~El~~~~~~~~~~~~iiPVf 106 (160)
..+.-+..|+..|.. .++.|+-+.
T Consensus 87 --~~d~Gt~~EiGyA~a---lgKPVi~l~ 110 (165)
T 2khz_A 87 --QPSLGVGYELGRAVA---LGKPILCLF 110 (165)
T ss_dssp --SCCHHHHHHHHHHHH---TCSSEEEEE
T ss_pred --CCCCCHHHHHHHHHH---CCCEEEEEE
Confidence 567889999999987 466666653
No 14
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=87.07 E-value=5.3 Score=28.18 Aligned_cols=86 Identities=16% Similarity=0.255 Sum_probs=53.4
Q ss_pred cEEEe--cccCCCcchHHHHHHHHHhcCCcEEEEeC---CCC-CCCCC-------chHHHHHHHHhcceEEEEeecCCCC
Q 045860 15 DAFLS--FRGEDTRKGFIGYLYTALNNKGIYVFRDD---KQL-EKGGS-------ISPNLLKAIDESRISIIVLSKNYAS 81 (160)
Q Consensus 15 dVFIS--y~~~D~~~~fv~~L~~~L~~~gi~v~~d~---~d~-~~G~~-------~~~~i~~~I~~S~~~ivvlS~~~~~ 81 (160)
-||++ +.+...+..+...+...|++.| .|+-.. .++ ..|.. +.+.-.+.|++|+++|++++ ..
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~ 79 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP 79 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence 46665 2232223356788999999999 664321 111 01111 33334568999999999998 55
Q ss_pred ChhHHHHHHHHHHHhhcCCceeeEEe
Q 045860 82 STWCLDELLKITECKNREDQIFPIFY 107 (160)
Q Consensus 82 S~wc~~El~~~~~~~~~~~~iiPVf~ 107 (160)
|.-...|+..|... +++|+-++-
T Consensus 80 d~Gt~~EiG~A~al---gkPV~~l~~ 102 (152)
T 4fyk_A 80 SLGVGYELGRAVAL---GKPILCLFR 102 (152)
T ss_dssp CHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred CCCHHHHHHHHHHc---CCeEEEEEe
Confidence 77888999988874 666665553
No 15
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=83.30 E-value=8.6 Score=27.31 Aligned_cols=77 Identities=9% Similarity=0.084 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhcC--CcEEEEeCCCC----CCCCCchHHH----HHHHHhcceEEEEeecCCCCChhHHHHHHHHHHHhh
Q 045860 28 GFIGYLYTALNNK--GIYVFRDDKQL----EKGGSISPNL----LKAIDESRISIIVLSKNYASSTWCLDELLKITECKN 97 (160)
Q Consensus 28 ~fv~~L~~~L~~~--gi~v~~d~~d~----~~G~~~~~~i----~~~I~~S~~~ivvlS~~~~~S~wc~~El~~~~~~~~ 97 (160)
.+..++..+|+++ |+.++.=.++- .++..+...| .++|++|+++|+++. ....+.....|+..|...
T Consensus 20 ~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~-- 96 (162)
T 3ehd_A 20 RYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAK-- 96 (162)
T ss_dssp HHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHC--
Confidence 4577799999875 88888633222 1233444444 457999999999994 445678899999999884
Q ss_pred cCCceeeEEec
Q 045860 98 REDQIFPIFYG 108 (160)
Q Consensus 98 ~~~~iiPVf~~ 108 (160)
+++|+.+.-+
T Consensus 97 -gkPVi~~~~D 106 (162)
T 3ehd_A 97 -GIPVVALYTD 106 (162)
T ss_dssp -TCCEEEECCC
T ss_pred -CCEEEEEEcC
Confidence 6667666543
No 16
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=69.45 E-value=27 Score=24.70 Aligned_cols=86 Identities=9% Similarity=0.021 Sum_probs=55.7
Q ss_pred cEEEec---ccCCCcchHHHHHHHHHhcC--CcEEEEeCCC-C--------CCC----CCchHHH----HHHHHhcceEE
Q 045860 15 DAFLSF---RGEDTRKGFIGYLYTALNNK--GIYVFRDDKQ-L--------EKG----GSISPNL----LKAIDESRISI 72 (160)
Q Consensus 15 dVFISy---~~~D~~~~fv~~L~~~L~~~--gi~v~~d~~d-~--------~~G----~~~~~~i----~~~I~~S~~~i 72 (160)
.||+.= +..+ ......+...|++. |+.++.=.++ . ..+ ..+...| .++|++|+++|
T Consensus 9 kIYLAGP~F~~~~--~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vV 86 (167)
T 1s2d_A 9 KIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV 86 (167)
T ss_dssp EEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEE
Confidence 477762 2222 35678899999999 8888763321 1 111 1122333 46799999999
Q ss_pred EEeecCCCCChhHHHHHHHHHHHhhcCCceeeEE
Q 045860 73 IVLSKNYASSTWCLDELLKITECKNREDQIFPIF 106 (160)
Q Consensus 73 vvlS~~~~~S~wc~~El~~~~~~~~~~~~iiPVf 106 (160)
+++...- .+.-...|+..|... ++.|+-+.
T Consensus 87 A~ldg~~-~D~GTa~EiGyA~al---gKPVv~l~ 116 (167)
T 1s2d_A 87 FLYDMDQ-LDDGSAFXIGFMRAM---HKPVILVP 116 (167)
T ss_dssp EEEESSS-CCHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EECCCCC-CCCCceeehhhHhhC---CCeEEEEE
Confidence 9998644 456778899988874 66776653
No 17
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=65.27 E-value=30 Score=23.63 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=37.6
Q ss_pred ccE-EEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHH-HhcceEEEE
Q 045860 14 YDA-FLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAI-DESRISIIV 74 (160)
Q Consensus 14 ~dV-FISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I-~~S~~~ivv 74 (160)
.+| .|.-+.. ...++..|...|...|+++-+|.+ ..++.+...|.++- ++.-++++|
T Consensus 9 ~Qv~IlpVs~~--~~~YA~~V~~~L~~~GiRvevD~~--r~~e~Lg~kIR~a~~~kvPy~lVV 67 (130)
T 1v95_A 9 VDCSVIVVNKQ--TKDYAESVGRKVRDLGMVVDLIFL--NTEVSLSQALEDVSRGGSPFAIVI 67 (130)
T ss_dssp CTEEEEESSSG--GGHHHHHHHHHHHTTTCCEEEEEC--TTSSCHHHHHHHHHHHTCSEEEEE
T ss_pred CeEEEEEeCcc--hHHHHHHHHHHHHHCCCEEEEecC--CCCCcHHHHHHHHHHcCCCEEEEE
Confidence 454 3334333 347899999999999999999863 12566666666653 345556555
No 18
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=60.39 E-value=8.2 Score=26.57 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=38.9
Q ss_pred EEEecccCCCcchHHHHHHHHHhcCCcEEEEeC--------C--------CCCCC-C-CchHHHHHHHHhcceEEEEeec
Q 045860 16 AFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDD--------K--------QLEKG-G-SISPNLLKAIDESRISIIVLSK 77 (160)
Q Consensus 16 VFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~--------~--------d~~~G-~-~~~~~i~~~I~~S~~~ivvlS~ 77 (160)
||||.+..|. .-+..+...|.+.|++++--. . .+..| . .-.++|...|++-++-+||..|
T Consensus 27 vliSv~d~dK--~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSFR--PRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGGH--HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccch--HHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 9999977664 335568889999999887321 0 11112 1 0003577778888888887777
Q ss_pred CC
Q 045860 78 NY 79 (160)
Q Consensus 78 ~~ 79 (160)
+-
T Consensus 105 ~~ 106 (143)
T 2yvq_A 105 NN 106 (143)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 19
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=59.59 E-value=7.3 Score=23.90 Aligned_cols=38 Identities=18% Similarity=0.403 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCcEEEEeCCCCC---CCCCchHHHHHHHHh
Q 045860 30 IGYLYTALNNKGIYVFRDDKQLE---KGGSISPNLLKAIDE 67 (160)
Q Consensus 30 v~~L~~~L~~~gi~v~~d~~d~~---~G~~~~~~i~~~I~~ 67 (160)
+..|...|+++||.+|++.+.+. |-..+..++...+..
T Consensus 7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~ 47 (78)
T 2jug_A 7 AGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGG 47 (78)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHH
Confidence 45688999999999999987664 333456666666543
No 20
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=55.46 E-value=32 Score=22.98 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=12.7
Q ss_pred CCchHHHHHHHHhcceEEEEeecCC
Q 045860 55 GSISPNLLKAIDESRISIIVLSKNY 79 (160)
Q Consensus 55 ~~~~~~i~~~I~~S~~~ivvlS~~~ 79 (160)
+.+.+.+.+.|++++..|.+.++.+
T Consensus 13 ~~~~~~~~~~i~~A~~~I~i~~~~~ 37 (155)
T 1byr_A 13 GSARVLVLSAIDSAKTSIRMMAYSF 37 (155)
T ss_dssp THHHHHHHHHHHHCSSEEEEEESSB
T ss_pred CcHHHHHHHHHHHHhhEEEEEEEEe
Confidence 3344455555555555555555444
No 21
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=45.67 E-value=60 Score=25.80 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=39.3
Q ss_pred CcccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHH-hcceEEEE
Q 045860 12 GKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAID-ESRISIIV 74 (160)
Q Consensus 12 ~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~-~S~~~ivv 74 (160)
..++|+|.--+++. ...+..|+..|++.|+++-+|.++ ..+...+..+-. +....|+|
T Consensus 297 ap~~v~vi~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~k~~~A~~~g~p~~iii 355 (401)
T 1evl_A 297 APVQVVIMNITDSQ-SEYVNELTQKLSNAGIRVKADLRN----EKIGFKIREHTLRRVPYMLVC 355 (401)
T ss_dssp CSSCEEEEESSGGG-HHHHHHHHHHHHHTTCCEEEECCS----SCHHHHHHHHHHTTCSEEEEE
T ss_pred CCeEEEEEecCHHH-HHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHhcCCCEEEEE
Confidence 34799887644433 456788999999999999999753 355555655533 45555554
No 22
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=42.66 E-value=81 Score=25.29 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=37.8
Q ss_pred cccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHH-hcceEEEE
Q 045860 13 KYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAID-ESRISIIV 74 (160)
Q Consensus 13 ~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~-~S~~~ivv 74 (160)
.+||+|..-+++. ...+..|+..|++.|+++-+|.++ ..+...+..+-. ++...|+|
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~~~~~a~~~g~~~~iii 389 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIME----RGLSAQLKYASAIGADFAVIF 389 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCSC----CCHHHHHHHHHHTTCSEEEEE
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecCC----CCHHHHHHHHHHCCCCEEEEE
Confidence 4799866544443 355788999999999999998743 344455554433 45555544
No 23
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=42.04 E-value=44 Score=27.40 Aligned_cols=59 Identities=8% Similarity=0.080 Sum_probs=38.7
Q ss_pred CcccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHH-hcceEEEEee
Q 045860 12 GKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAID-ESRISIIVLS 76 (160)
Q Consensus 12 ~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~-~S~~~ivvlS 76 (160)
..+||+|..-+++. ...+..|...|+++|+++-+|.++ ..+...+..+-. +... ++|+.
T Consensus 370 ~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~~----~sl~~q~k~A~~~g~p~-~iiiG 429 (465)
T 3net_A 370 TPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFEK----RQLGKQFQAADKQGIRF-CVIIG 429 (465)
T ss_dssp CSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCSC----CCHHHHHHHHHHHTCCE-EEECC
T ss_pred CCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeCC----CCHHHHHHHHHHcCCCE-EEEEC
Confidence 45799987644443 356788999999999999998743 345455555544 3444 44444
No 24
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=38.83 E-value=25 Score=28.79 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=36.6
Q ss_pred cccEEEeccc-C-CCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHH-hcceEEEE
Q 045860 13 KYDAFLSFRG-E-DTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAID-ESRISIIV 74 (160)
Q Consensus 13 ~~dVFISy~~-~-D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~-~S~~~ivv 74 (160)
.++|+|---+ + +.....+..|+..|++.|++|.+|+++ ..+...+..+-. +....|+|
T Consensus 365 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~----~~~g~k~~~ad~~g~p~~iiv 425 (458)
T 2i4l_A 365 PFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTD----QRAGAKFATADLIGIPWQIHV 425 (458)
T ss_dssp SCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSS----CCHHHHHHHHHHHTCSEEEEE
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCC----CCHHHHHHHHHhcCCCEEEEE
Confidence 4788876432 1 222356788999999999999999864 344444444422 44554444
No 25
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=38.27 E-value=61 Score=26.55 Aligned_cols=60 Identities=10% Similarity=-0.051 Sum_probs=37.7
Q ss_pred CcccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEee
Q 045860 12 GKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLS 76 (160)
Q Consensus 12 ~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS 76 (160)
...||||...+++.. ..+-.+...|+++|+++-++.. +..+...+..|-+.--..++++.
T Consensus 360 ~~~~v~v~~~~~~~~-~~a~~la~~LR~~Gi~ve~~~~----~~slkkq~k~A~k~ga~~vviiG 419 (456)
T 3lc0_A 360 HVVDDVVIPFDESMR-PHALAVLRRLRDAGRSADIILD----KKKVVQAFNYADRVGAVRAVLVA 419 (456)
T ss_dssp CCEEEEEEESSGGGH-HHHHHHHHHHHHTTCCEEECCS----CCCHHHHHHHHHHTTEEEEEEEC
T ss_pred CCCcEEEEEcCHHHH-HHHHHHHHHHHHCCCeEEEecC----CCCHHHHHHHHHHcCCCEEEEEC
Confidence 346888776555542 4477799999999999988752 33455555555543323444443
No 26
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=36.67 E-value=29 Score=28.87 Aligned_cols=59 Identities=10% Similarity=0.022 Sum_probs=37.7
Q ss_pred CcccEEEecc-c-CC--CcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHH-hcceEEEE
Q 045860 12 GKYDAFLSFR-G-ED--TRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAID-ESRISIIV 74 (160)
Q Consensus 12 ~~~dVFISy~-~-~D--~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~-~S~~~ivv 74 (160)
..|+|+|--- . .+ .-...+..|...|++.|++|-+|+++- .+...+..+-. +....|+|
T Consensus 313 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~----s~g~k~~~a~~~G~p~~iii 376 (501)
T 1nj1_A 313 AAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDI----RAGRKYYEWEMRGVPLRVEI 376 (501)
T ss_dssp SSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSS----CHHHHHHHHHHEECSEEEEE
T ss_pred cCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCC----CHHHHHHHHHhcCCCEEEEE
Confidence 4578887654 3 31 224568889999999999999998643 33344444433 44444444
No 27
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=35.74 E-value=90 Score=25.12 Aligned_cols=60 Identities=13% Similarity=-0.012 Sum_probs=38.6
Q ss_pred CCcccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHH-hcceEEEE
Q 045860 11 CGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAID-ESRISIIV 74 (160)
Q Consensus 11 ~~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~-~S~~~ivv 74 (160)
....||+|...+++.. ..+..|...|+++|+++-++.. .+..+...+..|=. +...+|+|
T Consensus 364 ~~~~~v~v~~~~~~~~-~~a~~l~~~Lr~~Gi~ve~~~~---~~~~l~~q~k~A~~~g~~~~vii 424 (464)
T 4g84_A 364 TTETQVLVASAQKKLL-EERLKLVSELWDAGIKAELLYK---KNPKLLNQLQYCEEAGIPLVAII 424 (464)
T ss_dssp SCCCCEEEECSSSSCH-HHHHHHHHHHHHTTCCEECCSC---SSCCHHHHHHHHHHHTCCEEEEC
T ss_pred cccceEEEEeCCHHHH-HHHHHHHHHHHHCCCcEEEEeC---CCCCHHHHHHHHHHCCCCEEEEE
Confidence 3457899987665543 4467899999999999987642 23345555555433 35555544
No 28
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=34.91 E-value=74 Score=25.36 Aligned_cols=58 Identities=19% Similarity=0.317 Sum_probs=39.1
Q ss_pred CcccEEEecccCCCcchHHHHHHHHHhcC--CcEEEEeCCCCCCCCCchHHHHHHH-HhcceEEEE
Q 045860 12 GKYDAFLSFRGEDTRKGFIGYLYTALNNK--GIYVFRDDKQLEKGGSISPNLLKAI-DESRISIIV 74 (160)
Q Consensus 12 ~~~dVFISy~~~D~~~~fv~~L~~~L~~~--gi~v~~d~~d~~~G~~~~~~i~~~I-~~S~~~ivv 74 (160)
..++|+|..-+++. ...+..|+..|+++ |+++-+|.++ ..+...+..+- .+....|+|
T Consensus 326 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~~~Gi~v~~d~~~----~~~~~~~~~a~~~g~p~~iii 386 (423)
T 1htt_A 326 PVVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNHGG----GNFKKQFARADKWGARVAVVL 386 (423)
T ss_dssp CSCSEEEEECSTTH-HHHHHHHHHHHHHHSTTCCEEECCSC----CCHHHHHHHHHHHTCSEEEEE
T ss_pred CCCcEEEEEcCHHH-HHHHHHHHHHHHcCCCCcEEEEeCCC----CCHHHHHHHHHHcCCCEEEEE
Confidence 45799888755443 35678899999999 9999998753 34545555543 345555554
No 29
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=34.54 E-value=1.1e+02 Score=25.22 Aligned_cols=60 Identities=13% Similarity=-0.012 Sum_probs=38.5
Q ss_pred CCcccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHH-hcceEEEE
Q 045860 11 CGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAID-ESRISIIV 74 (160)
Q Consensus 11 ~~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~-~S~~~ivv 74 (160)
....||||..-++.. ...+..|...|.++||++-++.. .+..+..++..|=. +...+|+|
T Consensus 417 ~~~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~---~~~~l~~q~k~A~~~g~~~~vii 477 (517)
T 4g85_A 417 TTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK---KNPKLLNQLQYCEEAGIPLVAII 477 (517)
T ss_dssp SCCCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEECSS---SSCCHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC---CCCCHHHHHHHHHHCCCCEEEEE
Confidence 345799987655543 34577899999999999988642 23345555555433 34555554
No 30
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=33.42 E-value=28 Score=22.96 Aligned_cols=20 Identities=30% Similarity=0.594 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHHhhccc
Q 045860 134 DNIEKVQKWRHALKVVANIS 153 (160)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~~ 153 (160)
++.+..+.|.+||..++.++
T Consensus 101 ~s~~e~~~Wv~aI~~~~~~~ 120 (120)
T 4a6h_A 101 DSYESMMSWFDNLKILTSTS 120 (120)
T ss_dssp SSHHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHHhccC
Confidence 35788999999999998763
No 31
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=30.11 E-value=46 Score=27.47 Aligned_cols=59 Identities=14% Similarity=0.024 Sum_probs=37.5
Q ss_pred CcccEEEecccC-C---CcchHHHHHHHHHhcCCcEEEEeCC-CCCCCCCchHHHHHHH-HhcceEEEE
Q 045860 12 GKYDAFLSFRGE-D---TRKGFIGYLYTALNNKGIYVFRDDK-QLEKGGSISPNLLKAI-DESRISIIV 74 (160)
Q Consensus 12 ~~~dVFISy~~~-D---~~~~fv~~L~~~L~~~gi~v~~d~~-d~~~G~~~~~~i~~~I-~~S~~~ivv 74 (160)
..++|+|---+. | .-...+..|...|++.|+++-+|++ +- .+...+..+- .+....|+|
T Consensus 286 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~----s~g~k~~~a~~~G~p~~iii 350 (477)
T 1hc7_A 286 APIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQH----TPGYKFHEWELKGVPFRVEL 350 (477)
T ss_dssp CSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECCCSSS----CHHHHHHHHHHTTCSEEEEE
T ss_pred CCceEEEEEcCCcchHHHHHHHHHHHHHHHHhCCEEEEEeCCCCC----CHHHHHHHHhhcCCCEEEEE
Confidence 457888875443 2 1235678899999999999999986 43 3334444442 345555544
No 32
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=30.06 E-value=60 Score=25.81 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=37.4
Q ss_pred CcccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHH-hcceEEEE
Q 045860 12 GKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAID-ESRISIIV 74 (160)
Q Consensus 12 ~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~-~S~~~ivv 74 (160)
..++|+|..-+++. ...+..|+..|++.|+++-+|.++ ..+...+..+-. +....|+|
T Consensus 328 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~~~~~a~~~g~p~~iii 386 (420)
T 1qe0_A 328 ENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYLQ----RKIKGQMKQADRLGAKFTIVI 386 (420)
T ss_dssp CCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCSC----CCHHHHHHHHHHTTCSEEEEE
T ss_pred CCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEecCC----CCHHHHHHHHHHcCCCEEEEE
Confidence 45789877544332 345778999999999999998743 345455555433 45544444
No 33
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=29.80 E-value=41 Score=27.58 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=32.0
Q ss_pred cCCCcchHHHHHHHHHhcCCcEEEEeCCCCC----CCCCchHHHHHHHHhcceEE
Q 045860 22 GEDTRKGFIGYLYTALNNKGIYVFRDDKQLE----KGGSISPNLLKAIDESRISI 72 (160)
Q Consensus 22 ~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~----~G~~~~~~i~~~I~~S~~~i 72 (160)
..|.|.+=+-.|...|.++|+.|.+.+-... .|..+...+.++++.|++.|
T Consensus 346 tdD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~aD~iv 400 (432)
T 3pid_A 346 SDNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEADVII 400 (432)
T ss_dssp ------CHHHHHHHHHHHTTCCEEEECTTCCSSEETTEEECCCHHHHHHHCSEEE
T ss_pred CcchhcChHHHHHHHHHhcCCEEEEECCCCChhhcCCceEECCHHHHHhcCCEEE
Confidence 3566666677899999999998888764332 22233456788888888855
No 34
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=29.01 E-value=1.3e+02 Score=20.24 Aligned_cols=51 Identities=20% Similarity=0.170 Sum_probs=32.3
Q ss_pred chHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCCC
Q 045860 27 KGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASS 82 (160)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~S 82 (160)
...+..|...|+..|+.+-+.+ + .+.-.+++...+.+++. |++-||.|...
T Consensus 15 ~~~A~~ia~~l~~~g~~v~~~~--~--~~~~~~~~~~~~~~~d~-ii~Gspty~g~ 65 (161)
T 3hly_A 15 DRLSQAIGRGLVKTGVAVEMVD--L--RAVDPQELIEAVSSARG-IVLGTPPSQPS 65 (161)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEE--T--TTCCHHHHHHHHHHCSE-EEEECCBSSCC
T ss_pred HHHHHHHHHHHHhCCCeEEEEE--C--CCCCHHHHHHHHHhCCE-EEEEcCCcCCc
Confidence 3568889999988898754432 1 12223455666777775 45568888654
No 35
>1tu9_A Hypothetical protein PA3967; structural genomics, heme, hemoglobin, pseudomonas aeruginos PSI, protein structure initiative; HET: HEM; 1.20A {Pseudomonas aeruginosa} SCOP: a.1.1.2
Probab=28.33 E-value=41 Score=22.20 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=26.7
Q ss_pred ccCchhhhcccchHHHHHHHHHHhhc--CCHHHHHHHHHHHHHhhcc
Q 045860 108 GVEPTVVRKQTASFGEAFAEHEEFFR--DNIEKVQKWRHALKVVANI 152 (160)
Q Consensus 108 ~v~p~~v~~~~~~f~~~f~~~~~~~~--~~~~~~~~W~~al~~v~~~ 152 (160)
+|.|.....- ++++....+... -+++...-|.+++..+++.
T Consensus 85 gV~p~~f~~~----~~~Ll~~l~~lg~~~t~e~~~AW~~~~~~~a~~ 127 (134)
T 1tu9_A 85 DIRPELYDLW----LDALLMAVAEHDRDCDAETRDAWRDVMGRGIAV 127 (134)
T ss_dssp CCCTTHHHHH----HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHH----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 5677776644 444444333322 2588899999999988865
No 36
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=28.10 E-value=1.3e+02 Score=19.94 Aligned_cols=81 Identities=20% Similarity=0.373 Sum_probs=41.9
Q ss_pred chHHHHHHHH---hcceEEEEeecCCCCChhHHHHHHHHHHHhhcCCceeeEEeccCchhhhcccchHHHHHHHHHHhhc
Q 045860 57 ISPNLLKAID---ESRISIIVLSKNYASSTWCLDELLKITECKNREDQIFPIFYGVEPTVVRKQTASFGEAFAEHEEFFR 133 (160)
Q Consensus 57 ~~~~i~~~I~---~S~~~ivvlS~~~~~S~wc~~El~~~~~~~~~~~~iiPVf~~v~p~~v~~~~~~f~~~f~~~~~~~~ 133 (160)
+.++|.+-.+ +-++.++|-+.+ .+|..+=+..|.+ .|--++ |.|+...++-|+. -.+.++
T Consensus 64 frenireiwerypqldvvvivttdd---kewikdfieeake---rgvevf-vvynnkdddrrke----------aqqefr 126 (162)
T 2l82_A 64 FRENIREIWERYPQLDVVVIVTTDD---KEWIKDFIEEAKE---RGVEVF-VVYNNKDDDRRKE----------AQQEFR 126 (162)
T ss_dssp HHHHHHHHHHHCTTCCEEEEEECCC---HHHHHHHHHHHHH---TTCEEE-EEEECSCHHHHHH----------HHHHHC
T ss_pred HHHHHHHHHHhCCCCcEEEEEecCc---HHHHHHHHHHHHh---cCcEEE-EEecCCCchhHHH----------HHHHhh
Confidence 3445544444 456666665543 5677666666655 344444 4565555554432 112222
Q ss_pred C----------CHHHHHHHHHHHHHhhcccc
Q 045860 134 D----------NIEKVQKWRHALKVVANISG 154 (160)
Q Consensus 134 ~----------~~~~~~~W~~al~~v~~~~g 154 (160)
. .++.+..-+.-+.++.++..
T Consensus 127 sdgvdvrtvsdkeelieqvrrfvrkvgsleh 157 (162)
T 2l82_A 127 SDGVDVRTVSDKEELIEQVRRFVRKVGSLEH 157 (162)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHHHHHTTSCC
T ss_pred hcCceeeecCCHHHHHHHHHHHHHHhccccc
Confidence 1 14455666666777766543
No 37
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=28.08 E-value=1e+02 Score=26.32 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=38.1
Q ss_pred cccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHH-HhcceEEEE
Q 045860 13 KYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAI-DESRISIIV 74 (160)
Q Consensus 13 ~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I-~~S~~~ivv 74 (160)
.++|+|---+.+.....+..|...|++.|+++.+|.++ ..+...+..+- .+....|+|
T Consensus 545 p~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~----~~~g~k~~~a~~~g~p~~iiv 603 (645)
T 1nyr_A 545 PKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRN----EKMGYKIREAQMQKIPYQIVV 603 (645)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCSS----CCHHHHHHHHHHHTCSEEEEE
T ss_pred CceEEEEEcccHHHHHHHHHHHHHHHhCCCEEEEECCC----CCHHHHHHHHHhcCCCEEEEE
Confidence 46887764331222456888999999999999999853 35555565553 345555554
No 38
>1sct_A Hemoglobin II (carbonmonoxy) (alpha chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=27.51 E-value=92 Score=20.90 Aligned_cols=45 Identities=9% Similarity=0.055 Sum_probs=30.5
Q ss_pred eccCchhhhcccchHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 045860 107 YGVEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKVVANI 152 (160)
Q Consensus 107 ~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~ 152 (160)
+++.|.+.......+-..+.+.... .-+++...-|.+++..|++.
T Consensus 105 ~gV~p~~f~~~~~~ll~~l~~~lg~-~~t~e~~~AW~k~~~~va~~ 149 (150)
T 1sct_A 105 RKISGDAFGAIVEPMKETLKARMGN-YYSDDVAGAWAALVGVVQAA 149 (150)
T ss_dssp TTCCHHHHGGGHHHHHHHHHHHHGG-GCCHHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHh
Confidence 4678887776554555555544432 23588899999999998864
No 39
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=27.47 E-value=34 Score=22.08 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=16.8
Q ss_pred chHHHHHHHHHhcCCcEEE
Q 045860 27 KGFIGYLYTALNNKGIYVF 45 (160)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~ 45 (160)
..|+..|...|..+||+|-
T Consensus 9 q~fi~~lk~lLk~RgIkVk 27 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKVK 27 (94)
T ss_pred hHHHHHHHHHHHHcCeeec
Confidence 3789999999999999983
No 40
>3ubc_A Hemoglobin-like flavoprotein; oxygen-bound, autoxidation, nanotemplate, langmuir-blodgett, films, oxygen transport; HET: HEM; 1.65A {Methylacidiphilum infernorum V4} PDB: 3ubv_A* 3s1i_A* 3s1j_A*
Probab=27.30 E-value=83 Score=20.45 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=28.2
Q ss_pred eccCchhhhcccchHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 045860 107 YGVEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKVVANI 152 (160)
Q Consensus 107 ~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~ 152 (160)
+++.|.+...-...+-..+.+.... .-+++...-|.+++..|++.
T Consensus 84 ~gV~p~~f~~~~~~Ll~~l~~~lg~-~~t~e~~~AW~~~~~~va~~ 128 (131)
T 3ubc_A 84 YGVVDSHYPLVGDCLLKSIQEYLGQ-GFTEEAKAAWTKVYGIAAQV 128 (131)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHHGG-GSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhCc-cCCHHHHHHHHHHHHHHHHH
Confidence 4677777664433333444443321 13588899999999998864
No 41
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=27.11 E-value=1.2e+02 Score=22.53 Aligned_cols=85 Identities=9% Similarity=0.154 Sum_probs=51.0
Q ss_pred cEEEecccCCCcchH-HHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCCChhHHHHHHHHH
Q 045860 15 DAFLSFRGEDTRKGF-IGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTWCLDELLKIT 93 (160)
Q Consensus 15 dVFISy~~~D~~~~f-v~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~S~wc~~El~~~~ 93 (160)
-|.+.--..|. +.. ..-+...|+.+|+.|..=..+. + .+++.+++.+.+.-++.+|-.-..+. ..+...+
T Consensus 125 ~vlla~~~gd~-HdiG~~iva~~L~~~G~~Vi~LG~~v----p-~e~l~~~~~~~~~d~V~lS~l~~~~~---~~~~~~i 195 (258)
T 2i2x_B 125 TVVCHVAEGDV-HDIGKNIVTALLRANGYNVVDLGRDV----P-AEEVLAAVQKEKPIMLTGTALMTTTM---YAFKEVN 195 (258)
T ss_dssp EEEEEECTTCC-CCHHHHHHHHHHHHTTCEEEEEEEEC----C-SHHHHHHHHHHCCSEEEEECCCTTTT---THHHHHH
T ss_pred eEEEEeCCCCc-cHHHHHHHHHHHHHCCCEEEECCCCC----C-HHHHHHHHHHcCCCEEEEEeeccCCH---HHHHHHH
Confidence 35444434444 344 3347778899999985322122 2 35778888888888888887655543 3444444
Q ss_pred HH-hhcCCceeeEEecc
Q 045860 94 EC-KNREDQIFPIFYGV 109 (160)
Q Consensus 94 ~~-~~~~~~iiPVf~~v 109 (160)
+. ++.+.. +||+.+-
T Consensus 196 ~~l~~~~~~-~~v~vGG 211 (258)
T 2i2x_B 196 DMLLENGIK-IPFACGG 211 (258)
T ss_dssp HHHHTTTCC-CCEEEES
T ss_pred HHHHhcCCC-CcEEEEC
Confidence 44 344445 8888864
No 42
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1
Probab=27.01 E-value=63 Score=24.57 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=50.0
Q ss_pred chHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCCChhHHHHHHHHHHH-hhcCCceeeE
Q 045860 27 KGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTWCLDELLKITEC-KNREDQIFPI 105 (160)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~S~wc~~El~~~~~~-~~~~~~iiPV 105 (160)
-.++.+|...|...|+.+-...+.+..|.-+ -+.-.-.+.++=||-+|-+...+.--..+|.+++.. +. ..|+.|
T Consensus 95 peLA~~i~~~l~~~g~~~~~~~~glDHG~~v--PL~~m~p~adiPVVqlSi~~~~~p~~~~~lG~aL~~lrd--~~VlIi 170 (271)
T 2pw6_A 95 PALAQRLVELLAPIPVTLDKEAWGFDHGSWG--VLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRD--EGIMLV 170 (271)
T ss_dssp HHHHHHHHHHHTTSCEEEESSCCCCCHHHHH--HHHHHSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGGGG--GTEEEE
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchhh--hHHHhcCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH--cCcEEE
Confidence 4789999999999999766544444444222 122222356777888888877777767799999976 43 345444
No 43
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=27.01 E-value=98 Score=25.32 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=39.3
Q ss_pred CcccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHH-hcceEEEE
Q 045860 12 GKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAID-ESRISIIV 74 (160)
Q Consensus 12 ~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~-~S~~~ivv 74 (160)
...+|+|..-+++. ...+..+...|+++|+++-+|...-..+..+...+..+-+ +...+|+|
T Consensus 353 ~p~~V~Vip~~~~~-~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iii 415 (467)
T 4e51_A 353 EGVDVYVVHQGDAA-REQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIF 415 (467)
T ss_dssp CCCSEEEEECSHHH-HHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEE
T ss_pred CCCeEEEEEcChHH-HHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEEE
Confidence 34689876544433 3457789999999999999986310024566666666644 34444444
No 44
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=26.92 E-value=1e+02 Score=25.71 Aligned_cols=61 Identities=15% Similarity=0.173 Sum_probs=38.8
Q ss_pred cccEEEeccc-C-CCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHH-hcceEEEEeecC
Q 045860 13 KYDAFLSFRG-E-DTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAID-ESRISIIVLSKN 78 (160)
Q Consensus 13 ~~dVFISy~~-~-D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~-~S~~~ivvlS~~ 78 (160)
.++|+|---+ + +.....+..|+..|++.|+++-+|.++ ..+...+..+-. +....|+ +.++
T Consensus 470 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v~~d~~~----~~~g~k~~~a~~~g~p~~ii-vG~~ 533 (572)
T 2j3l_A 470 PFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRN----ERAGVKFADADLIGCPIRIT-VGKK 533 (572)
T ss_dssp SCSEEEEESCTTCHHHHHHHHHHHHHHHHTTCCEEEECSS----CCHHHHHHHHHHHCCSEEEE-ECGG
T ss_pred CeEEEEEecCCCCHHHHHHHHHHHHHHHhCCCeEEEeCCC----CCHhHHHHHHHhcCCCEEEE-Eccc
Confidence 4789877543 2 112355788999999999999999853 355555655543 4444444 4443
No 45
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=26.58 E-value=46 Score=21.63 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHHHHhhc
Q 045860 134 DNIEKVQKWRHALKVVAN 151 (160)
Q Consensus 134 ~~~~~~~~W~~al~~v~~ 151 (160)
++++..++|.+||..++.
T Consensus 89 ~s~e~~~~Wl~al~~A~~ 106 (112)
T 2coc_A 89 SSAELQQQWLETLSTAAH 106 (112)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 357899999999998764
No 46
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=26.47 E-value=46 Score=22.00 Aligned_cols=20 Identities=15% Similarity=0.450 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHHhhccc
Q 045860 134 DNIEKVQKWRHALKVVANIS 153 (160)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~~ 153 (160)
++++....|..||..++.+.
T Consensus 103 ~s~~e~~~Wi~al~~a~~~~ 122 (126)
T 1v5p_A 103 NDQKDLKDWVEALNQASKSG 122 (126)
T ss_dssp SSHHHHHHHHHHHHHTTTTS
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 35788999999999998874
No 47
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=26.40 E-value=1.6e+02 Score=25.61 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=38.7
Q ss_pred cccEEEecccCC-CcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHH-hcceEEEE
Q 045860 13 KYDAFLSFRGED-TRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAID-ESRISIIV 74 (160)
Q Consensus 13 ~~dVFISy~~~D-~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~-~S~~~ivv 74 (160)
.++|+|---+++ .....+..|...|++.|+++.+|.++ ..+...+..+=. +....|+|
T Consensus 559 P~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~~----~sigkk~k~Ad~~G~p~~IiI 618 (693)
T 2zt5_A 559 PFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSS----GSIGRRYARTDEIGVAFGVTI 618 (693)
T ss_dssp SCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCCC----SCHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHHcCCCEEEEE
Confidence 478987764443 23467888999999999999999753 355555555533 34444444
No 48
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.36 E-value=51 Score=20.83 Aligned_cols=18 Identities=22% Similarity=0.446 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHHhhcc
Q 045860 135 NIEKVQKWRHALKVVANI 152 (160)
Q Consensus 135 ~~~~~~~W~~al~~v~~~ 152 (160)
+++....|..||..++.+
T Consensus 104 s~~e~~~Wi~al~~a~~~ 121 (122)
T 2yry_A 104 SPEEQEAWIQAMGEAARV 121 (122)
T ss_dssp SHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 478899999999998765
No 49
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=24.64 E-value=55 Score=20.37 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHHhhcc
Q 045860 135 NIEKVQKWRHALKVVANI 152 (160)
Q Consensus 135 ~~~~~~~W~~al~~v~~~ 152 (160)
+++...+|..||..+++.
T Consensus 85 s~~e~~~Wi~al~~~~~~ 102 (107)
T 2cof_A 85 SSEEMGHWLGLLLSESGS 102 (107)
T ss_dssp SHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHHHHHHHcC
Confidence 578899999999988764
No 50
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=24.60 E-value=20 Score=22.50 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=15.4
Q ss_pred EEecccCCCcchHHHHHHHHHhcC
Q 045860 17 FLSFRGEDTRKGFIGYLYTALNNK 40 (160)
Q Consensus 17 FISy~~~D~~~~fv~~L~~~L~~~ 40 (160)
|+||++....--|+..|+..|++.
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~ 44 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEY 44 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHH
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHh
Confidence 445555544445888888888754
No 51
>1cg5_A Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_A*
Probab=24.60 E-value=58 Score=21.80 Aligned_cols=42 Identities=14% Similarity=-0.001 Sum_probs=27.9
Q ss_pred eccCchhhhcccchHHHHHHHHHHhh--cCCHHHHHHHHHHHHHhhcc
Q 045860 107 YGVEPTVVRKQTASFGEAFAEHEEFF--RDNIEKVQKWRHALKVVANI 152 (160)
Q Consensus 107 ~~v~p~~v~~~~~~f~~~f~~~~~~~--~~~~~~~~~W~~al~~v~~~ 152 (160)
++|+|.+.+. ++..+....+.. .-+++...-|.+++..+++.
T Consensus 92 ~~V~p~~f~~----~~~~ll~~l~~~lg~~t~e~~~AW~k~~~~va~~ 135 (141)
T 1cg5_A 92 LLVDPHNFHL----FADCIVVTLAVNLQAFTPVTHCAVDKFLELVAYE 135 (141)
T ss_dssp TCCCTHHHHH----HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHH----HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 4567777664 444444444332 35688899999999998864
No 52
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=24.56 E-value=16 Score=23.37 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=16.1
Q ss_pred cccEEEeccc---------CCCcchHHHHHHHHHhcC
Q 045860 13 KYDAFLSFRG---------EDTRKGFIGYLYTALNNK 40 (160)
Q Consensus 13 ~~dVFISy~~---------~D~~~~fv~~L~~~L~~~ 40 (160)
.-|.+++|+. ....--|+..|+..|++.
T Consensus 10 ~aDfL~~yST~pG~~S~R~~~~GSwfIq~Lc~~l~~~ 46 (97)
T 2ql9_B 10 EADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEH 46 (97)
T ss_dssp TTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCcEeeecCCCCCeeHHHHHHHHHHh
Confidence 3466666653 333334677777777653
No 53
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=24.32 E-value=16 Score=22.60 Aligned_cols=32 Identities=9% Similarity=0.195 Sum_probs=21.6
Q ss_pred HHHhcceEEEEeecCCCCChhHHHHHHHHHHH
Q 045860 64 AIDESRISIIVLSKNYASSTWCLDELLKITEC 95 (160)
Q Consensus 64 ~I~~S~~~ivvlS~~~~~S~wc~~El~~~~~~ 95 (160)
-+.++.++++|+|++---..||...+..++++
T Consensus 36 vLCdaeV~livfs~~gk~~~~~s~~~~~il~r 67 (77)
T 1egw_A 36 VLCDCEIALIIFNSSNKLFQYASTDMDKVLLK 67 (77)
T ss_dssp HHTTCEEEEEEECTTCCEEEEESSCHHHHHHH
T ss_pred cccCCeEEEEEECCCCCEeeCCCCCHHHHHHH
Confidence 35688999999999854444554455555555
No 54
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=24.20 E-value=79 Score=25.87 Aligned_cols=54 Identities=22% Similarity=0.135 Sum_probs=38.1
Q ss_pred cCCCcchHHHHHHHHHhcCCcEEEEeCCCCC-------CCCCchHHHHHHHHhcceEEEEe
Q 045860 22 GEDTRKGFIGYLYTALNNKGIYVFRDDKQLE-------KGGSISPNLLKAIDESRISIIVL 75 (160)
Q Consensus 22 ~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~-------~G~~~~~~i~~~I~~S~~~ivvl 75 (160)
..|.|.+=+-.|...|.++|..|.+.+-... ++-.+.+...++++.++..|++.
T Consensus 336 ~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t 396 (446)
T 4a7p_A 336 TDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVT 396 (446)
T ss_dssp SCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECS
T ss_pred CcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEee
Confidence 4566766677899999999999888763331 24444556678899998866653
No 55
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=23.86 E-value=1.6e+02 Score=24.26 Aligned_cols=53 Identities=15% Similarity=0.094 Sum_probs=32.3
Q ss_pred CCcchHHHHHHHHHhcCCcEEE--EeCC-CCCCCCCchHHHHHHHH-hcceEEEEeecCCCC
Q 045860 24 DTRKGFIGYLYTALNNKGIYVF--RDDK-QLEKGGSISPNLLKAID-ESRISIIVLSKNYAS 81 (160)
Q Consensus 24 D~~~~fv~~L~~~L~~~gi~v~--~d~~-d~~~G~~~~~~i~~~I~-~S~~~ivvlS~~~~~ 81 (160)
+.-..++..|+..|++.||++. +|++ +- .+...+.++=. +.. .++++.++-+.
T Consensus 361 e~~~~~A~~L~~~Lr~~GIrV~~d~Ddr~~~----siGkK~r~Ad~iGiP-y~IiVG~kEle 417 (459)
T 3ikl_A 361 LELRQVCQGLFNELLENGISVWPGYLETMQS----SLEQLYSKYDEMSIL-FTVLVTETTLE 417 (459)
T ss_dssp TTHHHHHHHHHHHHHHTSCCEECGGGSSSCC----TTHHHHHHHGGGTCS-EEEEECTTSTT
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEeecCCcCC----CHHHHHHHHHHcCCC-EEEEECchhhh
Confidence 3335678889999999999999 6764 33 33344444433 333 44445555443
No 56
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5
Probab=23.85 E-value=50 Score=21.34 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=23.4
Q ss_pred cccCCCcchHHHHHHHHHhcCCcEEEEeCCCC
Q 045860 20 FRGEDTRKGFIGYLYTALNNKGIYVFRDDKQL 51 (160)
Q Consensus 20 y~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~ 51 (160)
|+..|. ..+..+...|+..||.+|+-+..+
T Consensus 27 ~ra~d~--v~a~~~k~LLe~aGI~~fv~De~m 56 (97)
T 2hfv_A 27 LRTNDA--VLLSAVGALLDGADIGHLVLDQNM 56 (97)
T ss_dssp EEECCH--HHHHHHHHHHHHTTCCEECCSCCC
T ss_pred eecCCH--HHHHHHHHHHHhCCCCEEEcCCcc
Confidence 456664 447778999999999999988655
No 57
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=23.57 E-value=65 Score=14.76 Aligned_cols=13 Identities=38% Similarity=0.892 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHh
Q 045860 137 EKVQKWRHALKVV 149 (160)
Q Consensus 137 ~~~~~W~~al~~v 149 (160)
+.+++|.+-|...
T Consensus 8 DSV~rWmeDLr~M 20 (22)
T 3ro3_B 8 DSVQRWMEDLKLM 20 (26)
T ss_pred HHHHHHHHHHHhh
Confidence 6789999888754
No 58
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=23.47 E-value=15 Score=23.50 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=16.1
Q ss_pred cccEEEecccCC---------CcchHHHHHHHHHhc
Q 045860 13 KYDAFLSFRGED---------TRKGFIGYLYTALNN 39 (160)
Q Consensus 13 ~~dVFISy~~~D---------~~~~fv~~L~~~L~~ 39 (160)
.-|.+++|+..+ ..--|+..|+..|++
T Consensus 12 ~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~ 47 (95)
T 1qtn_B 12 EADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRE 47 (95)
T ss_dssp TCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHH
Confidence 457777775433 223367777777765
No 59
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=23.34 E-value=1.3e+02 Score=20.45 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=18.8
Q ss_pred hhHHHHH---HHHHHH-hhcCCceeeEEeccCch
Q 045860 83 TWCLDEL---LKITEC-KNREDQIFPIFYGVEPT 112 (160)
Q Consensus 83 ~wc~~El---~~~~~~-~~~~~~iiPVf~~v~p~ 112 (160)
.||..++ ..+.+. ...+..|..|+..++|.
T Consensus 46 ~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~ 79 (170)
T 4hde_A 46 TVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPD 79 (170)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred CcccHHHHHHHHHHHhhhcccccceeEeeecCcc
Confidence 4785554 444444 44566788888877764
No 60
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=23.17 E-value=1.8e+02 Score=24.92 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=38.8
Q ss_pred cccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHH-hcceEEEEeecC
Q 045860 13 KYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAID-ESRISIIVLSKN 78 (160)
Q Consensus 13 ~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~-~S~~~ivvlS~~ 78 (160)
.++|+|---+++ ....+..|+..|++.|+++-+|.++ ..+...+.++-. +.... +|+.++
T Consensus 539 P~qv~vipi~~~-~~~~a~~v~~~L~~~Gi~v~~D~~~----~~~g~kir~a~~~g~p~~-ivvG~~ 599 (642)
T 1qf6_A 539 PVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLRN----EKIGFKIREHTLRRVPYM-LVCGDK 599 (642)
T ss_dssp SSCEEEEESSHH-HHHHHHHHHHHHHTTTCCEEEECCS----SCHHHHHHHHHHTTCSEE-EEECTT
T ss_pred CceEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEECCC----CCHHHHHHHHHHcCCCEE-EEECch
Confidence 478877643322 2456888999999999999999864 345455555533 34444 444444
No 61
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=23.16 E-value=23 Score=22.65 Aligned_cols=32 Identities=9% Similarity=0.195 Sum_probs=23.2
Q ss_pred HHHhcceEEEEeecCCCCChhHHHHHHHHHHH
Q 045860 64 AIDESRISIIVLSKNYASSTWCLDELLKITEC 95 (160)
Q Consensus 64 ~I~~S~~~ivvlS~~~~~S~wc~~El~~~~~~ 95 (160)
-+.++.++++|+|++=--..||...+..++++
T Consensus 36 vLCda~Valiifs~~gk~~~f~s~~~~~il~r 67 (90)
T 3p57_A 36 VLCDCEIALIIFNSSNKLFQYASTDMDKVLLK 67 (90)
T ss_dssp HHHTCEEEEEEECTTCCEEEEESSCHHHHHHH
T ss_pred hccCCceEEEEECCCCCEEEeCCCCHHHHHHH
Confidence 36689999999999855455665566666766
No 62
>1wmu_A Hemoglobin D alpha chain; hemoglobin D, reptilia, the aldabra giant tortoise, geochelone gigantea, oxygen storage/transport complex; HET: HEM; 1.65A {Dipsochelys dussumieri} SCOP: a.1.1.2 PDB: 1v75_A* 2z6n_A* 1hbr_A*
Probab=23.02 E-value=89 Score=20.71 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=28.6
Q ss_pred eccCchhhhcccchHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 045860 107 YGVEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKVVANI 152 (160)
Q Consensus 107 ~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~ 152 (160)
++|+|.+.......+-..+.+.... .-+++...-|.+++..+++.
T Consensus 91 ~~V~p~~f~~~~~~ll~~l~~~lg~-~~t~e~~~AW~~~~~~v~~~ 135 (141)
T 1wmu_A 91 LRVDPVNFKLLSHCFQVVLGAHLGR-EYTPQVQVAYDKFLAAVSAV 135 (141)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHGG-GCCHHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHccc-cCCHHHHHHHHHHHHHHHHH
Confidence 4567777665444444444443331 23588899999999998864
No 63
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=22.50 E-value=1.9e+02 Score=19.85 Aligned_cols=75 Identities=11% Similarity=-0.051 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhcCCc----EEEEeCCCCC------------CCCCchHHH----HHHHHhcceEEEEeecCCCCChhHHH
Q 045860 28 GFIGYLYTALNNKGI----YVFRDDKQLE------------KGGSISPNL----LKAIDESRISIIVLSKNYASSTWCLD 87 (160)
Q Consensus 28 ~fv~~L~~~L~~~gi----~v~~d~~d~~------------~G~~~~~~i----~~~I~~S~~~ivvlS~~~~~S~wc~~ 87 (160)
....++...|++.|. .++.-.++-. ++..+...| .++|++|+++|+++...- .+.-...
T Consensus 19 ~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vvA~ldg~~-~D~GT~~ 97 (157)
T 1f8y_A 19 KAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLGVYIPDE-EDVGLGM 97 (157)
T ss_dssp HHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEEEEECCGGG-CCHHHHH
T ss_pred HHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEEEEEcCCCC-CCccHHH
Confidence 457789999999885 5554322111 111122233 467999999999987432 4567888
Q ss_pred HHHHHHHHhhcCCceeeEE
Q 045860 88 ELLKITECKNREDQIFPIF 106 (160)
Q Consensus 88 El~~~~~~~~~~~~iiPVf 106 (160)
|+..|... +++|+-+.
T Consensus 98 EiGyA~A~---gkPVv~~~ 113 (157)
T 1f8y_A 98 ELGYALSQ---GKYVLLVI 113 (157)
T ss_dssp HHHHHHHT---TCEEEEEE
T ss_pred HHHHHHHC---CCeEEEEE
Confidence 99988874 66666654
No 64
>1sct_B Hemoglobin II (carbonmonoxy) (beta chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=22.24 E-value=1.4e+02 Score=19.93 Aligned_cols=45 Identities=9% Similarity=0.111 Sum_probs=29.5
Q ss_pred eccCchhhhcccchHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 045860 107 YGVEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKVVANI 152 (160)
Q Consensus 107 ~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~ 152 (160)
++|.|.+.......+-..+.+.... .-+++...-|.+++..|++.
T Consensus 106 ~~V~p~~f~~~~~~Ll~~l~~~lg~-~~t~e~~~AW~~~~~~va~~ 150 (151)
T 1sct_B 106 RQISADEFGEIVGPLRQTLKARMGN-YFDEDTVAAWASLVAVVQAS 150 (151)
T ss_dssp TTCCHHHHHTTHHHHHHHHHHHHGG-GCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHh
Confidence 4677877765544444444443331 23588899999999998864
No 65
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*
Probab=22.09 E-value=1.6e+02 Score=23.42 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=33.6
Q ss_pred cCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCC-----chHHHHHHHHhcceEEE
Q 045860 22 GEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGS-----ISPNLLKAIDESRISII 73 (160)
Q Consensus 22 ~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~-----~~~~i~~~I~~S~~~iv 73 (160)
..|.|.+=+-.|...|.++|..+.+.+--+..... +...+.++++.++..|+
T Consensus 323 ~~d~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 379 (402)
T 1dlj_A 323 SDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVT 379 (402)
T ss_dssp CSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEEC
T ss_pred CcccccChHHHHHHHHHHCCCEEEEECCCCChHHHHcCCeecCCHHHHHhCCcEEEE
Confidence 35667666778999999999888876643332211 12345566777777665
No 66
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=21.81 E-value=1.2e+02 Score=24.74 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=37.4
Q ss_pred cCCCcchHHHHHHHHHhcC-CcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEe
Q 045860 22 GEDTRKGFIGYLYTALNNK-GIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVL 75 (160)
Q Consensus 22 ~~D~~~~fv~~L~~~L~~~-gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvl 75 (160)
..|.|.+=+-.|...|.++ |..|.+.+-..... .....+.++++.++..|+..
T Consensus 329 tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~ad~vvi~t 382 (431)
T 3ojo_A 329 VDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD-FVEHDMSHAVKDASLVLILS 382 (431)
T ss_dssp SCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT-TBCSTTHHHHTTCSEEEECS
T ss_pred CcchhcChHHHHHHHHHhhcCCEEEEECCCcccc-cccCCHHHHHhCCCEEEEec
Confidence 4667777678899999999 99998876433322 23345678888998866553
No 67
>2nrl_A Myoglobin; transport protein; HET: HEM; 0.91A {Thunnus atlanticus} PDB: 2nx0_A* 3qm5_A* 3qm6_A* 3qm7_A* 3qm8_A* 3qm9_A* 3qma_A* 1myt_A* 2nrm_A*
Probab=21.79 E-value=97 Score=20.76 Aligned_cols=43 Identities=5% Similarity=0.009 Sum_probs=28.0
Q ss_pred eccCchhhhcccchHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 045860 107 YGVEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKVVANI 152 (160)
Q Consensus 107 ~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~ 152 (160)
++|+|.+.......+-..+.+. . .-+++...-|.+++..+++.
T Consensus 93 ~~V~p~~f~~~~~~Ll~~l~~~-~--~~t~e~~~AW~~~~~~v~~~ 135 (147)
T 2nrl_A 93 HKIPINNFKLISEVLVKVMQEK-A--GLDAGGQTALRNVMGIIIAD 135 (147)
T ss_dssp TCCCTHHHHHHHHHHHHHHHHH-S--CCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHh-c--cCCHHHHHHHHHHHHHHHHH
Confidence 3567777665444444444443 2 33588899999999988864
No 68
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=21.62 E-value=19 Score=23.27 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=16.9
Q ss_pred CcccEEEecccCC---------CcchHHHHHHHHHhcC
Q 045860 12 GKYDAFLSFRGED---------TRKGFIGYLYTALNNK 40 (160)
Q Consensus 12 ~~~dVFISy~~~D---------~~~~fv~~L~~~L~~~ 40 (160)
..-|.+++|+..+ ..--|+..|+..|++.
T Consensus 15 ~~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~ 52 (103)
T 2dko_B 15 VEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQY 52 (103)
T ss_dssp TTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHh
Confidence 3457777765433 2234677777777653
No 69
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=21.19 E-value=97 Score=20.73 Aligned_cols=41 Identities=10% Similarity=0.029 Sum_probs=27.7
Q ss_pred eccCchhhhcccchHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 045860 107 YGVEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKVVAN 151 (160)
Q Consensus 107 ~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~ 151 (160)
++|+|.+.... +..+....+...-+++...-|.+++..|++
T Consensus 104 ~~V~p~~f~~~----~~~ll~~l~~~~~t~e~~~AW~k~~~~va~ 144 (146)
T 3g46_A 104 RKISAAEFGKI----NGPIKKVLASKNFGDKYANAWAKLVAVVQA 144 (146)
T ss_dssp TTCCHHHHGGG----HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 46777776644 444444444333468899999999998875
No 70
>2vhb_A Hemoglobin; heme, respiratory protein, oxygen transport; HET: HEM; 1.76A {Vitreoscilla stercoraria} SCOP: a.1.1.2 PDB: 1vhb_A* 3vhb_A* 4vhb_A*
Probab=21.19 E-value=1.3e+02 Score=19.85 Aligned_cols=45 Identities=18% Similarity=0.160 Sum_probs=28.4
Q ss_pred eccCchhhhcccchHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 045860 107 YGVEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKVVANI 152 (160)
Q Consensus 107 ~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~ 152 (160)
+++.|.........+..++.+.... .-+++...-|.+++..+++.
T Consensus 88 ~gV~p~~f~~~~~~Ll~~l~~~lg~-~~t~e~~~AW~~~~~~i~~~ 132 (146)
T 2vhb_A 88 AGVAAAHYPIVGQELLGAIKEVLGD-AATDDILDAWGKAYGVIADV 132 (146)
T ss_dssp HTCCGGGHHHHHHHHHHHHHHHHGG-GCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhCc-cCCHHHHHHHHHHHHHHHHH
Confidence 3677877765444444444443321 13578899999999988764
No 71
>2wy4_A Single domain haemoglobin; heme, transport, oxygen transport; HET: HEM; 1.35A {Campylobacter jejuni}
Probab=21.11 E-value=87 Score=20.50 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=25.5
Q ss_pred ccCchhhhcccchHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 045860 108 GVEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKVVANI 152 (160)
Q Consensus 108 ~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~ 152 (160)
++.|.........+..++.+... ..++...-|.+++..+++.
T Consensus 88 gv~p~~f~~~~~~ll~~l~~~lg---~~~e~~~AW~~~~~~ia~~ 129 (140)
T 2wy4_A 88 GVKEEHYPIVGACLLKAIKNLLN---PDEATLKAWEVAYGKIAKF 129 (140)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHHH
Confidence 56777765433333333333322 2267788899999988764
No 72
>1x46_A Globin chain, hemoglobin component VII; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.50A {Tokunagayusurika akamusi}
Probab=21.07 E-value=71 Score=21.40 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=27.1
Q ss_pred ccCchhhhcccchHHHHHHHHHHhh--cCCHHHHHHHHHHHHHhhcc
Q 045860 108 GVEPTVVRKQTASFGEAFAEHEEFF--RDNIEKVQKWRHALKVVANI 152 (160)
Q Consensus 108 ~v~p~~v~~~~~~f~~~f~~~~~~~--~~~~~~~~~W~~al~~v~~~ 152 (160)
+|.|..... ++..+....+.. .-+++...-|.+++..+++.
T Consensus 103 gV~p~~f~~----~~~~Ll~~l~~~lg~~t~e~~~AW~~~~~~i~~~ 145 (150)
T 1x46_A 103 GVTAAHFEE----FETALEAFLESHASGYNAGTKKAWDSAFNNMYSV 145 (150)
T ss_dssp TCCHHHHHH----HHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHH----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 566766654 444444444332 24688899999999988764
No 73
>3bom_B Hemoglobin subunit beta-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_B* 3bcq_B* 1spg_B*
Probab=21.00 E-value=1.3e+02 Score=20.07 Aligned_cols=46 Identities=15% Similarity=0.074 Sum_probs=29.1
Q ss_pred eccCchhhhcccchHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 045860 107 YGVEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKVVANI 152 (160)
Q Consensus 107 ~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~ 152 (160)
++|+|.+.+.....+-..+.+......-+++...-|.+++..+++.
T Consensus 96 ~~V~p~~f~~~~~~Ll~~l~~~lg~~~~t~e~~~AW~k~~~~va~~ 141 (147)
T 3bom_B 96 LFVDPDNFRLLADCITVCVAAKLGPAVFSADTQEAFQKFLAVVVSA 141 (147)
T ss_dssp SCCCTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHHHHH
Confidence 4567877765444444444443321103578888999999988864
No 74
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=20.90 E-value=2.2e+02 Score=22.47 Aligned_cols=57 Identities=16% Similarity=0.051 Sum_probs=34.9
Q ss_pred CcccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHH-hcceEEEE
Q 045860 12 GKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAID-ESRISIIV 74 (160)
Q Consensus 12 ~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~-~S~~~ivv 74 (160)
..++|+|..-+++. ...+..|+..|+++ +++-+|.++ ..+...+..+-. +....|+|
T Consensus 327 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~-i~v~~d~~~----~~~~~~~~~a~~~g~p~~iiv 384 (421)
T 1h4v_B 327 KGPDLYLIPLTEEA-VAEAFYLAEALRPR-LRAEYALAP----RKPAKGLEEALKRGAAFAGFL 384 (421)
T ss_pred CCCeEEEEECChHH-HHHHHHHHHHHHhc-CEEEEecCC----CCHHHHHHHHHhCCCCEEEEE
Confidence 45789885544433 35577899999999 999988753 234344444433 34444443
No 75
>2w72_B Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7w_B* 1qi8_B* 1j7y_B* 1dxu_B* 1a0u_B* 1a0z_B* 1gli_B* 1j7s_B* 1o1l_B* 1o1n_B* 1y0t_B* 1y0w_B* 1o1o_B* 1ye2_B* 1y35_B* 1y22_B* 1ye0_B* 1dxt_B* 1y5f_B* 1ird_B* ...
Probab=20.73 E-value=1.4e+02 Score=19.88 Aligned_cols=45 Identities=18% Similarity=0.076 Sum_probs=28.2
Q ss_pred eccCchhhhcccchHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 045860 107 YGVEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKVVANI 152 (160)
Q Consensus 107 ~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~ 152 (160)
++|+|.+.......+-..+.+.... .-+++...-|.+++..+++.
T Consensus 96 ~~V~p~~f~~~~~~Ll~~l~~~lg~-~~t~e~~~AW~~~~~~va~~ 140 (146)
T 2w72_B 96 LHVDPENFRLLGNVLVCVLAHHFGK-EFTPPVQAAYQKVVAGVANA 140 (146)
T ss_dssp SCCCTHHHHHHHHHHHHHHHHHHGG-GSCHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHHccc-cCCHHHHHHHHHHHHHHHHH
Confidence 4567777665433344444433321 23588899999999998864
No 76
>4hrt_B Hemoglobin B chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_B*
Probab=20.60 E-value=1.7e+02 Score=19.58 Aligned_cols=44 Identities=9% Similarity=0.127 Sum_probs=28.7
Q ss_pred eccCchhhhcccchHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 045860 107 YGVEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKVVAN 151 (160)
Q Consensus 107 ~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~ 151 (160)
++|.|.........+-..+.+.... .-+++...-|.+++..|++
T Consensus 107 ~gV~p~~f~~~~~~Ll~~l~~~lg~-~~t~e~~~AW~k~~~~va~ 150 (152)
T 4hrt_B 107 RQISADEFGEIVGPLRQTLKARMGN-YFDEDTVAAWASLVAVVQA 150 (152)
T ss_dssp -CCCHHHHGGGHHHHHHHHHHHHGG-GCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHH
Confidence 4677877766544444445444332 2358889999999998875
No 77
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=20.59 E-value=21 Score=23.19 Aligned_cols=28 Identities=11% Similarity=0.233 Sum_probs=16.5
Q ss_pred cccEEEecc---------cCCCcchHHHHHHHHHhcC
Q 045860 13 KYDAFLSFR---------GEDTRKGFIGYLYTALNNK 40 (160)
Q Consensus 13 ~~dVFISy~---------~~D~~~~fv~~L~~~L~~~ 40 (160)
.-|.+++|+ +....--|+..|+..|++.
T Consensus 14 ~aDfL~~yST~pG~~S~R~~~~GSwFIq~Lc~~l~~~ 50 (105)
T 1pyo_B 14 RSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSER 50 (105)
T ss_dssp SCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCcEEEecCCCCCHHHHHHHHHHHHH
Confidence 446666664 3333334777787777653
No 78
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=20.58 E-value=2e+02 Score=25.04 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHH-HhcceEEEEeecCCCCChhHHHHHHHHHHHhhcCCceeeEEe
Q 045860 29 FIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAI-DESRISIIVLSKNYASSTWCLDELLKITECKNREDQIFPIFY 107 (160)
Q Consensus 29 fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I-~~S~~~ivvlS~~~~~S~wc~~El~~~~~~~~~~~~iiPVf~ 107 (160)
.+..|..+|+++|+.|..-. +. ++....+ +++++..+|+|-+-. ..++...++. ...=||||+
T Consensus 18 ~i~~L~~~Le~~g~~V~~a~-------s~-~Da~~~i~~~~~i~avIld~d~~-----~~~ll~~Ir~---~~~~iPVFl 81 (715)
T 3n75_A 18 PIRELHRALERLNFQIVYPN-------DR-DDLLKLIENNARLCGVIFDWDKY-----NLELCEEISK---MNENLPLYA 81 (715)
T ss_dssp HHHHHHHHHHHTTCEEECCS-------SH-HHHHHHHHHCTTEEEEEEEHHHH-----HHHHHHHHHH---HCTTCEEEE
T ss_pred HHHHHHHHHHHCCcEEEEeC-------CH-HHHHHHHHhCCCceEEEEecccc-----HHHHHHHHHH---hCCCCCEEE
Confidence 47789999999999986432 22 3444444 467899999886532 2344444433 233478876
No 79
>2r80_B Hemoglobin subunit beta; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3dhr_B* 3mju_B* 1faw_B* 3k8b_B* 2qmb_B* 3eok_B* 1a4f_B* 1c40_B* 1hv4_B* 2zfb_B* 3mjp_B* 1hbr_B* 3fs4_B* 3a59_B* 1wmu_B* 1v75_B* 2z6n_B* 3at5_B* 3at6_B*
Probab=20.41 E-value=1.4e+02 Score=19.82 Aligned_cols=45 Identities=22% Similarity=0.198 Sum_probs=29.2
Q ss_pred eccCchhhhcccchHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 045860 107 YGVEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKVVANI 152 (160)
Q Consensus 107 ~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~ 152 (160)
++|+|.+.......+-..+.+.... .-+++...-|.+++..+++.
T Consensus 96 ~~V~p~~f~~~~~~ll~~l~~~lg~-~~t~e~~~AW~~~~~~va~~ 140 (146)
T 2r80_B 96 LHVDPENFRLLGDILVIILAAHFGK-DFTPECQAAWQKLVRVVAHA 140 (146)
T ss_dssp SCCCTHHHHHHHHHHHHHHHHHHGG-GSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHccc-cCCHHHHHHHHHHHHHHHHH
Confidence 5677877765444444444443331 23588899999999998864
No 80
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=20.39 E-value=72 Score=21.17 Aligned_cols=42 Identities=10% Similarity=0.049 Sum_probs=27.7
Q ss_pred eccCchhhhcccchHHHHHHHHHHhh---cCCHHHHHHHHHHHHHhhcc
Q 045860 107 YGVEPTVVRKQTASFGEAFAEHEEFF---RDNIEKVQKWRHALKVVANI 152 (160)
Q Consensus 107 ~~v~p~~v~~~~~~f~~~f~~~~~~~---~~~~~~~~~W~~al~~v~~~ 152 (160)
++|+|.+... ++..+....+.. .-+++...-|.+++..+++.
T Consensus 91 ~gV~p~~f~~----~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~i~~~ 135 (141)
T 2w72_C 91 LRVDPVNFKL----LSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTV 135 (141)
T ss_dssp TCCCTHHHHH----HHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHH----HHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHH
Confidence 3567777664 444554444432 13588889999999998864
No 81
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=20.38 E-value=2.5e+02 Score=20.87 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=32.4
Q ss_pred HHHhcCCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCC-ChhHHHHHHHHHHH
Q 045860 35 TALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYAS-STWCLDELLKITEC 95 (160)
Q Consensus 35 ~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~-S~wc~~El~~~~~~ 95 (160)
..++..|.++..-.-+-..+-.+ +.+.+++.. ...|++.+|+... ..+-..++..+.+.
T Consensus 113 ~~~~~~g~~~~~~~~~~~~~~~~-~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~ 172 (361)
T 3ftb_A 113 INAKKHGVSVVFSYLDENMCIDY-EDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLKL 172 (361)
T ss_dssp HHHHHTTCEEEEEECCTTSCCCH-HHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHHHH
T ss_pred HHHHHcCCeEEEeecCcccCCCH-HHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence 34455576544322121122233 677788877 6677777886543 33445566666653
No 82
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=20.31 E-value=2.3e+02 Score=19.88 Aligned_cols=11 Identities=27% Similarity=0.126 Sum_probs=6.4
Q ss_pred HHHHHHHhcCC
Q 045860 31 GYLYTALNNKG 41 (160)
Q Consensus 31 ~~L~~~L~~~g 41 (160)
..|..++++..
T Consensus 49 ~~ll~~I~~A~ 59 (196)
T 4ggj_A 49 SRLLRALLAAR 59 (196)
T ss_dssp HHHHHHHHTCS
T ss_pred HHHHHHHHHhh
Confidence 45666666554
No 83
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=20.31 E-value=1.9e+02 Score=19.01 Aligned_cols=28 Identities=18% Similarity=0.049 Sum_probs=19.4
Q ss_pred CCC-CchHHHHHHHHhcceEEEEeecCCC
Q 045860 53 KGG-SISPNLLKAIDESRISIIVLSKNYA 80 (160)
Q Consensus 53 ~G~-~~~~~i~~~I~~S~~~ivvlS~~~~ 80 (160)
+|. .+.......++.++.+|+|++-.-.
T Consensus 74 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 102 (183)
T 3kkq_A 74 AGQEEFSAMREQYMRTGDGFLIVYSVTDK 102 (183)
T ss_dssp CSCGGGCSSHHHHHHHCSEEEEEEETTCH
T ss_pred CCchhhHHHHHHHHhcCCEEEEEEECCCH
Confidence 443 3344456678899999999987643
No 84
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=20.25 E-value=1.5e+02 Score=20.95 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=23.0
Q ss_pred EEecccCCCc--chHHHHHHHHHhcCCcEEEEe
Q 045860 17 FLSFRGEDTR--KGFIGYLYTALNNKGIYVFRD 47 (160)
Q Consensus 17 FISy~~~D~~--~~fv~~L~~~L~~~gi~v~~d 47 (160)
||.+-|-|.. -..+..|.+.|+++|+++.+-
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 7888777652 234667999999999987664
No 85
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=20.23 E-value=2.2e+02 Score=21.82 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCC----cEEEEeCCCCCCCCCchHHHHHHHHh---cceEEEEeecCCCC
Q 045860 30 IGYLYTALNNKG----IYVFRDDKQLEKGGSISPNLLKAIDE---SRISIIVLSKNYAS 81 (160)
Q Consensus 30 v~~L~~~L~~~g----i~v~~d~~d~~~G~~~~~~i~~~I~~---S~~~ivvlS~~~~~ 81 (160)
+..|...|.++| +.|.+- +.-|.+..++..+.+.. .++.++.+.|.|..
T Consensus 64 ~~~L~~~L~~~~~~~~~~V~~a---mry~~P~i~~~l~~l~~~G~~~ivvlPl~pq~s~ 119 (310)
T 2h1v_A 64 AHNLEQHLNEIQDEITFKAYIG---LAHIEPFIEDAVAEMHKDGITEAVSIVLAPHFST 119 (310)
T ss_dssp HHHHHHHHHHHCSSEEEEEEEE---ESSSSSBHHHHHHHHHHTTCCEEEEEESSSSCCT
T ss_pred HHHHHHHHHhcCCCCCceEeeh---hcCCCCCHHHHHHHHHhcCCCEEEEEECccchhh
Confidence 445666665442 455444 33455555544444442 34566666766644
No 86
>2uvp_A HOBA; hypothetical protein, unknown function, DNAA, SIS fold, DNA replication; 1.7A {Helicobacter pylori} PDB: 2uvp_B 2wp0_A
Probab=20.18 E-value=18 Score=26.29 Aligned_cols=74 Identities=18% Similarity=0.318 Sum_probs=44.7
Q ss_pred chHHHHHHHHHhcCCc-----EEEEeCCCCCCCCCchHHHHHHHHh--cceEEEEeecCCCCChhHHHHHHHHHHHh-hc
Q 045860 27 KGFIGYLYTALNNKGI-----YVFRDDKQLEKGGSISPNLLKAIDE--SRISIIVLSKNYASSTWCLDELLKITECK-NR 98 (160)
Q Consensus 27 ~~fv~~L~~~L~~~gi-----~v~~d~~d~~~G~~~~~~i~~~I~~--S~~~ivvlS~~~~~S~wc~~El~~~~~~~-~~ 98 (160)
..|..+..+.+++.|. .-|+.++. -.|..-+..+|+. -..+++|++.. ...|..+=+..-+... ..
T Consensus 8 ~~~~~Wtle~IR~~~~~~~~~~~WlEe~R----~eW~pL~a~~l~~il~G~s~iviTD~--~R~WF~~Yil~~IN~~~~~ 81 (186)
T 2uvp_A 8 KNFYDWIKEFIRDQGEFIAQQSGWLELER----SSYAKLIAQTISHVLNGGSLLVSADS--SRHWFLNYILSNLNPKDLK 81 (186)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHTTGGGGCC----SCHHHHHHHHHHHHHTTCEEEEEECG--GGHHHHHHHHHHHSCSCCT
T ss_pred HHHHHHHHHHHHhccccccccccHHHHHh----hccHHHHHHHHHHHhCCCeEEEEeCc--hHHHHHHHHHHHhcCcccc
Confidence 3588888888888864 55776543 3555555555552 25566666665 4567654333333222 34
Q ss_pred CCceeeEE
Q 045860 99 EDQIFPIF 106 (160)
Q Consensus 99 ~~~iiPVf 106 (160)
.++++||+
T Consensus 82 ~RP~lPi~ 89 (186)
T 2uvp_A 82 ERPLLSVI 89 (186)
T ss_dssp TCCCCCEE
T ss_pred CCCcceEE
Confidence 77899986
No 87
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=20.15 E-value=1.9e+02 Score=18.80 Aligned_cols=28 Identities=7% Similarity=-0.009 Sum_probs=20.2
Q ss_pred CC-CCchHHHHHHHHhcceEEEEeecCCC
Q 045860 53 KG-GSISPNLLKAIDESRISIIVLSKNYA 80 (160)
Q Consensus 53 ~G-~~~~~~i~~~I~~S~~~ivvlS~~~~ 80 (160)
+| +.+.......++.++.+|+|++..-.
T Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 100 (179)
T 1z0f_A 72 AGQERFRAVTRSYYRGAAGALMVYDITRR 100 (179)
T ss_dssp TTGGGTCHHHHHHHHTCSEEEEEEETTCH
T ss_pred CCChHhhhhHHHHhccCCEEEEEEeCcCH
Confidence 45 33445566788999999999997643
Done!