BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045861
(508 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 158/564 (28%), Positives = 219/564 (38%), Gaps = 81/564 (14%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+D ++N + +P LQ LDI+ N ++G R + C EL +++S NQ G
Sbjct: 202 LDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 259
Query: 61 IPRDIGNLTSARAXXXXXXXXIGEIPHEI-GNLHNLEYLVLENNNFDGP------RHSNL 113
IP L S + GEIP + G L L L N+F G S L
Sbjct: 260 IPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 317
Query: 114 ERLYLERNNFSGTIP-SFIFNASKLSILGIRTNSFSGTIPSTIANLR-NLQWLDLSFN-- 169
E L L NNFSG +P + L +L + N FSG +P ++ NL +L LDLS N
Sbjct: 318 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 377
Query: 170 -------------------YXXXXXXXXXXXXXXRNCRNLKVIDLTGNQLHGILPSSMGN 210
Y NC L + L+ N L G +PSS+G+
Sbjct: 378 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 437
Query: 211 LSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISXXXXXXXXXXXXXX 270
LS L + + G IP+E+ + L T+ L N LTG IP
Sbjct: 438 LS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 496
Query: 271 XXXEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFL 330
G IP + L L L+ +N G+IPA +G L L L++N+ IP+
Sbjct: 497 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 556
Query: 331 SLRDIXXXXXXXXXXXXXXXXD--------IGNLKVVVGID------LSRNNLSDSIPTV 376
D GNL GI LS N + V
Sbjct: 557 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 616
Query: 377 IGGLSN--------LAFFSLAYNKL------------------------QGSIPESLGDL 404
GG ++ + F ++YN L GSIP+ +GDL
Sbjct: 617 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 676
Query: 405 RSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSF 464
R L LDLS+N G IP++ L L ++LS N L G IP F F F+ N
Sbjct: 677 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPG 736
Query: 465 LCGSPNLQVPPRKDIKTSPHRKSR 488
LCG P + P + H++S
Sbjct: 737 LCGYPLPRCDPSNADGYAHHQRSH 760
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 138/518 (26%), Positives = 212/518 (40%), Gaps = 98/518 (18%)
Query: 3 FANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPR--NLWQCQELIAISLSHNQLT-- 58
+N+ + GS+ C L +LD++ N ++GPV +L C L +++S N L
Sbjct: 81 LSNSHINGSVSGFKCS--ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 59 ------------GLIPRDIGNLTSARAXXXXXXXXIGEIPH------------EIGNLHN 94
++ +++ A GE+ H ++ N
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 198
Query: 95 LEYLVLENNNFDGP-----RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSG 149
LE+L + +NNF S L+ L + N SG I ++L +L I +N F G
Sbjct: 199 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 258
Query: 150 TIPSTIANLRNLQWLDLSFNYXXXXXXXXXXXXXXRNCRNLKVIDLTGNQLHGILPSSMG 209
IP L++LQ+L L+ N C L +DL+GN +G +P G
Sbjct: 259 PIPPLP--LKSLQYLSLAENKFTGEIPDFLSGA----CDTLTGLDLSGNHFYGAVPPFFG 312
Query: 210 -------------NLSTSL-----------EYIYMPYCRRSGRIPEEIGNL-INLITMSL 244
N S L + + + + SG +PE + NL +L+T+ L
Sbjct: 313 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 372
Query: 245 GINKLTGSI--PISXXXXXXXXXXXXXXXXXEGSIPDSLCNLGRLVELQFYDNKLFGSIP 302
N +G I + G IP +L N LV L N L G+IP
Sbjct: 373 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 432
Query: 303 ACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDIXXXXXXXXXXXXXXXXDIGNLKVVVGI 362
+ +G LS LR+L L N+L IP + + K + +
Sbjct: 433 SSLGSLSKLRDLKLWLNMLEGEIPQELMYV------------------------KTLETL 468
Query: 363 DLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIP 422
L N+L+ IP+ + +NL + SL+ N+L G IP+ +G L +L L LSNNSFSG IP
Sbjct: 469 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Query: 423 RSFEKLLYLEYLNLSFNRLKGEIP------SGESFANF 454
L +L+L+ N G IP SG+ ANF
Sbjct: 529 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 566
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 155/545 (28%), Positives = 212/545 (38%), Gaps = 81/545 (14%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+D ++N + +P LQ LDI+ N ++G R + C EL +++S NQ G
Sbjct: 205 LDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262
Query: 61 IPRDIGNLTSARAXXXXXXXXIGEIPHEI-GNLHNLEYLVLENNNFDGP------RHSNL 113
IP L S + GEIP + G L L L N+F G S L
Sbjct: 263 IPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320
Query: 114 ERLYLERNNFSGTIP-SFIFNASKLSILGIRTNSFSGTIPSTIANLR-NLQWLDLSFN-- 169
E L L NNFSG +P + L +L + N FSG +P ++ NL +L LDLS N
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380
Query: 170 -------------------YXXXXXXXXXXXXXXRNCRNLKVIDLTGNQLHGILPSSMGN 210
Y NC L + L+ N L G +PSS+G+
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440
Query: 211 LSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISXXXXXXXXXXXXXX 270
LS L + + G IP+E+ + L T+ L N LTG IP
Sbjct: 441 LS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499
Query: 271 XXXEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFL 330
G IP + L L L+ +N G+IPA +G L L L++N+ IP+
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559
Query: 331 SLRDIXXXXXXXXXXXXXXXXD--------IGNLKVVVGID------LSRNNLSDSIPTV 376
D GNL GI LS N + V
Sbjct: 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619
Query: 377 IGGLSN--------LAFFSLAYNKL------------------------QGSIPESLGDL 404
GG ++ + F ++YN L GSIP+ +GDL
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679
Query: 405 RSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSF 464
R L LDLS+N G IP++ L L ++LS N L G IP F F F+ N
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPG 739
Query: 465 LCGSP 469
LCG P
Sbjct: 740 LCGYP 744
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 137/518 (26%), Positives = 212/518 (40%), Gaps = 98/518 (18%)
Query: 3 FANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPR--NLWQCQELIAISLSHNQLT-- 58
+N+ + GS+ C L +LD++ N ++GPV +L C L +++S N L
Sbjct: 84 LSNSHINGSVSGFKCSA--SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 59 ------------GLIPRDIGNLTSARAXXXXXXXXIGEIPH------------EIGNLHN 94
++ +++ A GE+ H ++ N
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 201
Query: 95 LEYLVLENNNFDGP-----RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSG 149
LE+L + +NNF S L+ L + N SG I ++L +L I +N F G
Sbjct: 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261
Query: 150 TIPSTIANLRNLQWLDLSFNYXXXXXXXXXXXXXXRNCRNLKVIDLTGNQLHGILPSSMG 209
IP L++LQ+L L+ N C L +DL+GN +G +P G
Sbjct: 262 PIPPLP--LKSLQYLSLAENKFTGEIPDFLSGA----CDTLTGLDLSGNHFYGAVPPFFG 315
Query: 210 NLST------------------------SLEYIYMPYCRRSGRIPEEIGNL-INLITMSL 244
+ S L+ + + + SG +PE + NL +L+T+ L
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 245 GINKLTGSI--PISXXXXXXXXXXXXXXXXXEGSIPDSLCNLGRLVELQFYDNKLFGSIP 302
N +G I + G IP +L N LV L N L G+IP
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435
Query: 303 ACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDIXXXXXXXXXXXXXXXXDIGNLKVVVGI 362
+ +G LS LR+L L N+L IP + + K + +
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYV------------------------KTLETL 471
Query: 363 DLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIP 422
L N+L+ IP+ + +NL + SL+ N+L G IP+ +G L +L L LSNNSFSG IP
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Query: 423 RSFEKLLYLEYLNLSFNRLKGEIP------SGESFANF 454
L +L+L+ N G IP SG+ ANF
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 122/273 (44%), Gaps = 52/273 (19%)
Query: 198 NQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISX 257
N L G +P ++ L T L Y+Y+ + SG IP+ + + L+T+ N L+G++P
Sbjct: 87 NNLVGPIPPAIAKL-TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP--- 142
Query: 258 XXXXXXXXXXXXXXXXEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPL-RNLLL 316
S+ +L LV + F N++ G+IP G S L ++ +
Sbjct: 143 ---------------------PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 317 HSNVLTYVIPSTFLSLRDIXXXXXXXXXXXXXXXXDIGNLKVVVGIDLSRNNLSDSIPTV 376
N LT IP TF +L NL V DLSRN L +
Sbjct: 182 SRNRLTGKIPPTFANL----------------------NLAFV---DLSRNMLEGDASVL 216
Query: 377 IGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNL 436
G N LA N L + + +G ++L LDL NN G +P+ +L +L LN+
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275
Query: 437 SFNRLKGEIPSGESFANFSDNSFMGNSFLCGSP 469
SFN L GEIP G + F +++ N LCGSP
Sbjct: 276 SFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 104/252 (41%), Gaps = 44/252 (17%)
Query: 85 IPHEIGNLHNLEYLVLEN-NNFDGP------RHSNLERLYLERNNFSGTIPSFIFNASKL 137
IP + NL L +L + NN GP + + L LY+ N SG IP F+ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 138 SILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYXXXXXXXXXXXXXXRNCRNLKVIDLTG 197
L N+ SGT+P +I++L NL + ++F+ G
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNL--VGITFD---------------------------G 158
Query: 198 NQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISX 257
N++ G +P S G+ S + + R +G+IP NL NL + L N L G +
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASV-- 215
Query: 258 XXXXXXXXXXXXXXXXEGSIPDSLCNLG---RLVELQFYDNKLFGSIPACIGKLSPLRNL 314
+ S+ L +G L L +N+++G++P + +L L +L
Sbjct: 216 --LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273
Query: 315 LLHSNVLTYVIP 326
+ N L IP
Sbjct: 274 NVSFNNLCGEIP 285
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 46/182 (25%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELI-AISLSHNQLTG 59
+DF+ N L+G+LP + LP L + + N ++G +P + +L ++++S N+LTG
Sbjct: 130 LDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188
Query: 60 LIPRDIGNLTSARAXXXXXXXXIGEIPHEIGNLHNLEYLVLENNNFDGP------RHSNL 113
IP NL NL ++ L N +G N
Sbjct: 189 KIPPTFANL-------------------------NLAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 114 ERLYLERNNFSGTIPSFIFNASKLSI------LGIRTNSFSGTIPSTIANLRNLQWLDLS 167
++++L +N S F+ K+ + L +R N GT+P + L+ L L++S
Sbjct: 224 QKIHLAKN-------SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 168 FN 169
FN
Sbjct: 277 FN 278
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 23 LQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNL 68
L LD+ NN + G +P+ L Q + L ++++S N L G IP+ GNL
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 59/167 (35%), Gaps = 24/167 (14%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+ F N ++G++PD ++ I+ N +TG +P L + LS N L G
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG- 211
Query: 61 IPRDIGNLTSARAXXXXXXXXIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLER 120
D L + + ++G + NL L L
Sbjct: 212 ---DASVLFGSDKNTQKIHLAKNSLAFDLGKVG---------------LSKNLNGLDLRN 253
Query: 121 NNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLS 167
N GT+P + L L + N+ G IP NLQ D+S
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG----GNLQRFDVS 296
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 71/161 (44%), Gaps = 3/161 (1%)
Query: 289 ELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDIXXXXXXXXXXXXX 348
+L NKL +L+ LR L L+ N L + F L+++
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 349 XXXDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSL 407
L + + L RN L P V L+ L + SL YN+LQ S+P+ + D L SL
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSL 159
Query: 408 EFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
+ L L NN +F+KL L+ L L N+LK +P G
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEG 199
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 4/145 (2%)
Query: 355 NLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGS-IPESLGDLRSLEFLDLS 413
+L+ ++ +D+S + + + GLS+L +A N Q + +P+ +LR+L FLDLS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 414 NNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG--ESFANFSDNSFMGNSFLCGSPNL 471
P +F L L+ LN++ N+LK +P G + + N + C P +
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537
Query: 472 QVPPRKDIKTSPHRKSRKNTRSSAR 496
R K S + S +
Sbjct: 538 DYLSRWLNKNSQKEQGSAKCSGSGK 562
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 403 DLRSLEFLDLSNN--SFSGFIPRSFEKLLYLEYLNLSFN 439
DL SLEFLDLS N SF G +S L+YL+LSFN
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 131 IFNA-SKLSILGIRTNSFSGT-IPSTIANLRNLQWLDLSFNYXXXXXXXXXXXXXXRNCR 188
IFN S L +L + NSF +P LRNL +LDLS +
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS-----QCQLEQLSPTAFNSLS 494
Query: 189 NLKVIDLTGNQLHGILPSSMGNLSTSLEYIYM 220
+L+V+++ NQL + P + + TSL+ I++
Sbjct: 495 SLQVLNMASNQLKSV-PDGIFDRLTSLQKIWL 525
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 356 LKVVVGIDLSRNNLSD-SIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSN 414
L+ + +D +NL S +V L NL + +++ + + L SLE L ++
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454
Query: 415 NSFS-GFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
NSF F+P F +L L +L+LS +L+ P+
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 377 IGGLSNLAFFSLAYNKLQG-SIPESLGDLRSLEFLDLSNN 415
IG L L ++A+N +Q +PE +L +LE LDLS+N
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 7/144 (4%)
Query: 353 IGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDL 412
G L +V ++L RN L+ P G S++ L NK++ + L L+ L+L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 413 SNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCGSP--- 469
+N S +P SFE L L LNL+ N S G + CG+P
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKV 169
Query: 470 -NLQVPPRKDIKTSPHRKSRKNTR 492
++Q+ KD+ S + S +N+
Sbjct: 170 RDVQI---KDLPHSEFKCSSENSE 190
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 6/97 (6%)
Query: 353 IGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLD 411
+ NLK +V ++ +L D V L+NL + L +N+LQ S+P+ + D L +L LD
Sbjct: 108 LTNLKELVLVENQLQSLPDG---VFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLD 163
Query: 412 LSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
L NN F+KL L+ L+L+ N+LK +P G
Sbjct: 164 LDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS-VPDG 199
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 352 DIGNLKVVVGID---LSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSL 407
DI LK + + L+ N L V L+NL L N+LQ S+P+ + D L +L
Sbjct: 77 DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNL 135
Query: 408 EFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
+L L +N F+KL L L+L N+L+ +P G
Sbjct: 136 TYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEG 175
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 6/97 (6%)
Query: 353 IGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLD 411
+ NLK +V ++ +L D V L+NL + +LA+N+LQ S+P+ + D L +L LD
Sbjct: 108 LTNLKELVLVENQLQSLPDG---VFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELD 163
Query: 412 LSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
LS N F+KL L+ L L N+LK +P G
Sbjct: 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDG 199
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 376 VIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLDLSNNSFSGFIPRSFEKLLYLEYL 434
V L+NL L N+LQ S+P+ + D L +L +L+L++N F+KL L L
Sbjct: 104 VFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162
Query: 435 NLSFNRLKGEIPSG 448
+LS+N+L+ +P G
Sbjct: 163 DLSYNQLQS-LPEG 175
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 362 IDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLDLSNNSFSGF 420
++L+ N L V L+NL L+YN+LQ S+PE + D L L+ L L N
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSV 196
Query: 421 IPRSFEKLLYLEYLNLSFN 439
F++L L+Y+ L N
Sbjct: 197 PDGVFDRLTSLQYIWLHDN 215
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 17/144 (11%)
Query: 87 HEIGNLH---NLEYLVLENNNFDG------PRHSNLERLYLERNNFSGTIPSFIFNA-SK 136
H+I L NL YL+L N + +NL+ L L N ++P +F+ +
Sbjct: 76 HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTN 134
Query: 137 LSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYXXXXXXXXXXXXXXRNCRNLKVIDLT 196
L+ L + N L NL LDLS+N LK + L
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-----QLQSLPEGVFDKLTQLKDLRLY 189
Query: 197 GNQLHGILPSSMGNLSTSLEYIYM 220
NQL + P + + TSL+YI++
Sbjct: 190 QNQLKSV-PDGVFDRLTSLQYIWL 212
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 355 NLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGS-IPESLGDLRSLEFLDLS 413
+L+ ++ +D+S + + + GLS+L +A N Q + +P+ +LR+L FLDLS
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 414 NNSFSGFIPRSFEKLLYLEYLNLSFN 439
P +F L L+ LN+S N
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHN 209
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 356 LKVVVGIDLSRNNLSD-SIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSN 414
L+ + +D +NL S +V L NL + +++ + + L SLE L ++
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159
Query: 415 NSFS-GFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
NSF F+P F +L L +L+LS +L+ P+
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 111 SNLERLYLERNNFSGTIPSFIFNA-SKLSILGIRTN--SFSGTIPSTIANLRNLQWLDLS 167
S+ RL LE N ++P +F+ ++L+ L + +N SF G + +L++LDLS
Sbjct: 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86
Query: 168 FN 169
FN
Sbjct: 87 FN 88
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 355 NLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGS-IPESLGDLRSLEFLDLS 413
+L+ ++ +D+S + + + GLS+L +A N Q + +P+ +LR+L FLDLS
Sbjct: 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502
Query: 414 NNSFSGFIPRSFEKLLYLEYLNLSFN 439
P +F L L+ LN+S N
Sbjct: 503 QCQLEQLSPTAFNSLSSLQVLNMSHN 528
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 403 DLRSLEFLDLSNN--SFSGFIPRSFEKLLYLEYLNLSFN 439
DL SLEFLDLS N SF G +S + L+YL+LSFN
Sbjct: 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN 407
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 356 LKVVVGIDLSRNNLSD-SIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSN 414
L+ + +D +NL S +V L NL + +++ + + L SLE L ++
Sbjct: 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 478
Query: 415 NSFS-GFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
NSF F+P F +L L +L+LS +L+ P+
Sbjct: 479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 513
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 377 IGGLSNLAFFSLAYNKLQG-SIPESLGDLRSLEFLDLSNN 415
IG L L ++A+N +Q +PE +L +LE LDLS+N
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 356 LKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGS-IPESLGDLRSLEFLDLSN 414
L+ ++ +D+S + + + GLS+L +A N Q + +P+ +LR+L FLDLS
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 415 NSFSGFIPRSFEKLLYLEYLNLSFN 439
P +F L L+ LN+S N
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHN 504
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 403 DLRSLEFLDLSNN--SFSGFIPRSFEKLLYLEYLNLSFN 439
DL SLEFLDLS N SF G +S L+YL+LSFN
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 356 LKVVVGIDLSRNNLSD-SIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSN 414
L+ + +D +NL S +V L NL + +++ + + L SLE L ++
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454
Query: 415 NSFS-GFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
NSF F+P F +L L +L+LS +L+ P+
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 377 IGGLSNLAFFSLAYNKLQG-SIPESLGDLRSLEFLDLSNN 415
IG L L ++A+N +Q +PE +L +LE LDLS+N
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 1/131 (0%)
Query: 312 RNLLLHSNVLTYVIPSTFLSLRDIXXXXXXXXXXXXXXXXDIGNLKVVVGIDLSRN-NLS 370
+ + LH N ++YV ++F S R++ L ++ +DLS N L
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 371 DSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLY 430
PT GL +L L LQ P L +L++L L +N+ +F L
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGN 153
Query: 431 LEYLNLSFNRL 441
L +L L NR+
Sbjct: 154 LTHLFLHGNRI 164
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 362 IDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFI 421
+DL L+ GL+ L + +L YN+LQ DL L L L+NN +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 422 PRSFEKLLYLEYLNLSFNRLKGEIPSG 448
F+ L L+ L L N+LK +PSG
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLK-SLPSG 125
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 11/195 (5%)
Query: 276 SIPDSLCNLGRL-VELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRD 334
++ CN G+ V+ Q K S+P+ G + L L S L + +TF L
Sbjct: 6 TVTGCTCNEGKKEVDCQ---GKSLDSVPS--GIPADTEKLDLQSTGLATLSDATFRGLTK 60
Query: 335 IXXXXXXXXXXXXXXXXDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQ 394
+ +L + + L+ N L+ V L+ L L N+L+
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120
Query: 395 GSIPESLGD-LRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG--ESF 451
S+P + D L L+ L L+ N +F+KL L+ L+LS N+L+ +P G +
Sbjct: 121 -SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRL 178
Query: 452 ANFSDNSFMGNSFLC 466
+ GN F C
Sbjct: 179 GKLQTITLFGNQFDC 193
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 111 SNLERLYLERNNFSGTIPSFIFNA-SKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFN 169
+ L++LYL N ++PS +F+ +KL L + TN L NLQ L LS N
Sbjct: 107 TQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 362 IDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFI 421
+DL L+ GL+ L + +L YN+LQ DL L L L+NN +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 422 PRSFEKLLYLEYLNLSFNRLKGEIPSG 448
F+ L L+ L L N+LK +PSG
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLK-SLPSG 125
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 11/195 (5%)
Query: 276 SIPDSLCNLGRL-VELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRD 334
++ CN G+ V+ Q K S+P+ G + L L S L + +TF L
Sbjct: 6 TVTGCTCNEGKKEVDCQ---GKSLDSVPS--GIPADTEKLDLQSTGLATLSDATFRGLTK 60
Query: 335 IXXXXXXXXXXXXXXXXDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQ 394
+ +L + + L+ N L+ V L+ L L N+L+
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120
Query: 395 GSIPESLGD-LRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG--ESF 451
S+P + D L L+ L L+ N +F+KL L+ L+LS N+L+ +P G +
Sbjct: 121 -SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRL 178
Query: 452 ANFSDNSFMGNSFLC 466
+ GN F C
Sbjct: 179 GKLQTITLFGNQFDC 193
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 111 SNLERLYLERNNFSGTIPSFIFNA-SKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFN 169
+ L++LYL N ++PS +F+ +KL L + TN L NLQ L LS N
Sbjct: 107 TQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 99/415 (23%), Positives = 161/415 (38%), Gaps = 112/415 (26%)
Query: 15 DMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARAX 74
D ++L L ++ +NN +T P L +L+ I +++NQ+ + P
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP------------ 102
Query: 75 XXXXXXXIGEIPHEIGNLHNLEYLVLENN---NFDGPRH-SNLERLYLERNNFSGTIPSF 130
+ NL NL L L NN + D ++ +NL RL L N S S
Sbjct: 103 --------------LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI--SA 146
Query: 131 IFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYXXXXXXXXXXXXXXRNCRNL 190
+ + L L +N + P +ANL L+ LD+S N NL
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAK-------LTNL 197
Query: 191 KVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIG---NLINLITMSLGIN 247
+ + T NQ+ I P +G L T+L+ + + +G ++IG +L NL + L N
Sbjct: 198 ESLIATNNQISDITP--LGIL-TNLDELSL-----NGNQLKDIGTLASLTNLTDLDLANN 249
Query: 248 KLTGSIPISXXXXXXXXXXXXXXXXXEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGK 307
+++ P+S L +L EL+ N++ P +
Sbjct: 250 QISNLAPLS--------------------------GLTKLTELKLGANQISNISP--LAG 281
Query: 308 LSPLRNLLLHSNVLTYVIPSTFLSLRDIXXXXXXXXXXXXXXXXDIGNLKVVVGIDLSRN 367
L+ L NL L+ N L + P I NLK + + L N
Sbjct: 282 LTALTNLELNENQLEDISP--------------------------ISNLKNLTYLTLYFN 315
Query: 368 NLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIP 422
N+SD P + L+ L + NK+ S SL +L ++ +L +N S P
Sbjct: 316 NISDISP--VSSLTKLQRLFFSNNKV--SDVSSLANLTNINWLSAGHNQISDLTP 366
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 105/261 (40%), Gaps = 49/261 (18%)
Query: 189 NLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINK 248
NL I+ + NQL I P + NL T L I M + + P + NL NL ++L N+
Sbjct: 64 NLTQINFSNNQLTDITP--LKNL-TKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 249 LTGSIPISXXXXXXXXXXXXXXXXXEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKL 308
+T P L NL L L+ N + I A G L
Sbjct: 119 ITDIDP--------------------------LKNLTNLNRLELSSNTI-SDISALSG-L 150
Query: 309 SPLRNLLLHSNVLTYVIPS---TFLSLRDIXXXXXXXXXXXXXXXXDIGNLKVVVGIDLS 365
+ L+ L SN +T + P T L DI + NL+ ++ +
Sbjct: 151 TSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAK----LTNLESLIA---T 203
Query: 366 RNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSF 425
N +SD P +G L+NL SL N+L+ +L L +L LDL+NN S P S
Sbjct: 204 NNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS- 258
Query: 426 EKLLYLEYLNLSFNRLKGEIP 446
L L L L N++ P
Sbjct: 259 -GLTKLTELKLGANQISNISP 278
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 19/174 (10%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTG-PVPRNLWQCQELIAISLSHNQLTG 59
+ F++N +T P +L L+ LDI++N V+ V L + LIA ++NQ++
Sbjct: 156 LSFSSNQVTDLKP---LANLTTLERLDISSNKVSDISVLAKLTNLESLIA---TNNQISD 209
Query: 60 LIPRDIGNLTSARAXXXXXXXXIGEIPHEIGNLHNLEYLVLENNNFD--GPRH--SNLER 115
+ P I + IG + +L NL L L NN P + L
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTE 265
Query: 116 LYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFN 169
L L N S P + + L+ L + N P I+NL+NL +L L FN
Sbjct: 266 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 315
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 99/415 (23%), Positives = 160/415 (38%), Gaps = 112/415 (26%)
Query: 15 DMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARAX 74
D ++L L ++ +NN +T P L +L+ I +++NQ+ + P
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP------------ 102
Query: 75 XXXXXXXIGEIPHEIGNLHNLEYLVLENN---NFDGPRH-SNLERLYLERNNFSGTIPSF 130
+ NL NL L L NN + D ++ +NL RL L N S S
Sbjct: 103 --------------LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI--SA 146
Query: 131 IFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYXXXXXXXXXXXXXXRNCRNL 190
+ + L L +N + P +ANL L+ LD+S N NL
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAK-------LTNL 197
Query: 191 KVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIG---NLINLITMSLGIN 247
+ + T NQ+ I P +G L T+L+ + + +G ++IG +L NL + L N
Sbjct: 198 ESLIATNNQISDITP--LGIL-TNLDELSL-----NGNQLKDIGTLASLTNLTDLDLANN 249
Query: 248 KLTGSIPISXXXXXXXXXXXXXXXXXEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGK 307
+++ P+S L +L EL+ N++ P +
Sbjct: 250 QISNLAPLS--------------------------GLTKLTELKLGANQISNISP--LAG 281
Query: 308 LSPLRNLLLHSNVLTYVIPSTFLSLRDIXXXXXXXXXXXXXXXXDIGNLKVVVGIDLSRN 367
L+ L NL L+ N L + P I NLK + + L N
Sbjct: 282 LTALTNLELNENQLEDISP--------------------------ISNLKNLTYLTLYFN 315
Query: 368 NLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIP 422
N+SD P + L+ L NK+ S SL +L ++ +L +N S P
Sbjct: 316 NISDISP--VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP 366
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 107/261 (40%), Gaps = 49/261 (18%)
Query: 189 NLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINK 248
NL I+ + NQL I P + NL T L I M + + P + NL NL ++L N+
Sbjct: 64 NLTQINFSNNQLTDITP--LKNL-TKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 249 LTGSIPISXXXXXXXXXXXXXXXXXEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKL 308
+T P+ +L NL RL EL + I A G L
Sbjct: 119 ITDIDPLK-----------------------NLTNLNRL-ELS---SNTISDISALSG-L 150
Query: 309 SPLRNLLLHSNVLTYVIPS---TFLSLRDIXXXXXXXXXXXXXXXXDIGNLKVVVGIDLS 365
+ L+ L SN +T + P T L DI + NL+ ++ +
Sbjct: 151 TSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAK----LTNLESLIA---T 203
Query: 366 RNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSF 425
N +SD P +G L+NL SL N+L+ +L L +L LDL+NN S P S
Sbjct: 204 NNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS- 258
Query: 426 EKLLYLEYLNLSFNRLKGEIP 446
L L L L N++ P
Sbjct: 259 -GLTKLTELKLGANQISNISP 278
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 19/174 (10%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTG-PVPRNLWQCQELIAISLSHNQLTG 59
+ F++N +T P +L L+ LDI++N V+ V L + LIA ++NQ++
Sbjct: 156 LSFSSNQVTDLKP---LANLTTLERLDISSNKVSDISVLAKLTNLESLIA---TNNQISD 209
Query: 60 LIPRDIGNLTSARAXXXXXXXXIGEIPHEIGNLHNLEYLVLENNNFD--GPRH--SNLER 115
+ P I + IG + +L NL L L NN P + L
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTE 265
Query: 116 LYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFN 169
L L N S P + + L+ L + N P I+NL+NL +L L FN
Sbjct: 266 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 315
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 99/415 (23%), Positives = 160/415 (38%), Gaps = 112/415 (26%)
Query: 15 DMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARAX 74
D ++L L ++ +NN +T P L +L+ I +++NQ+ + P
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP------------ 102
Query: 75 XXXXXXXIGEIPHEIGNLHNLEYLVLENN---NFDGPRH-SNLERLYLERNNFSGTIPSF 130
+ NL NL L L NN + D ++ +NL RL L N S S
Sbjct: 103 --------------LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI--SA 146
Query: 131 IFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYXXXXXXXXXXXXXXRNCRNL 190
+ + L L +N + P +ANL L+ LD+S N NL
Sbjct: 147 LSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAK-------LTNL 197
Query: 191 KVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIG---NLINLITMSLGIN 247
+ + T NQ+ I P +G L T+L+ + + +G ++IG +L NL + L N
Sbjct: 198 ESLIATNNQISDITP--LGIL-TNLDELSL-----NGNQLKDIGTLASLTNLTDLDLANN 249
Query: 248 KLTGSIPISXXXXXXXXXXXXXXXXXEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGK 307
+++ P+S L +L EL+ N++ P +
Sbjct: 250 QISNLAPLS--------------------------GLTKLTELKLGANQISNISP--LAG 281
Query: 308 LSPLRNLLLHSNVLTYVIPSTFLSLRDIXXXXXXXXXXXXXXXXDIGNLKVVVGIDLSRN 367
L+ L NL L+ N L + P I NLK + + L N
Sbjct: 282 LTALTNLELNENQLEDISP--------------------------ISNLKNLTYLTLYFN 315
Query: 368 NLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIP 422
N+SD P + L+ L NK+ S SL +L ++ +L +N S P
Sbjct: 316 NISDISP--VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP 366
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 107/261 (40%), Gaps = 49/261 (18%)
Query: 189 NLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINK 248
NL I+ + NQL I P + NL T L I M + + P + NL NL ++L N+
Sbjct: 64 NLTQINFSNNQLTDITP--LKNL-TKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 249 LTGSIPISXXXXXXXXXXXXXXXXXEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKL 308
+T P+ +L NL RL EL + I A G L
Sbjct: 119 ITDIDPLK-----------------------NLTNLNRL-ELS---SNTISDISALSG-L 150
Query: 309 SPLRNLLLHSNVLTYVIPS---TFLSLRDIXXXXXXXXXXXXXXXXDIGNLKVVVGIDLS 365
+ L+ L SN +T + P T L DI + NL+ ++ +
Sbjct: 151 TSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAK----LTNLESLIA---T 203
Query: 366 RNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSF 425
N +SD P +G L+NL SL N+L+ +L L +L LDL+NN S P S
Sbjct: 204 NNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS- 258
Query: 426 EKLLYLEYLNLSFNRLKGEIP 446
L L L L N++ P
Sbjct: 259 -GLTKLTELKLGANQISNISP 278
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 19/174 (10%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTG-PVPRNLWQCQELIAISLSHNQLTG 59
++F++N +T P +L L+ LDI++N V+ V L + LIA ++NQ++
Sbjct: 156 LNFSSNQVTDLKP---LANLTTLERLDISSNKVSDISVLAKLTNLESLIA---TNNQISD 209
Query: 60 LIPRDIGNLTSARAXXXXXXXXIGEIPHEIGNLHNLEYLVLENNNFD--GPRH--SNLER 115
+ P I + IG + +L NL L L NN P + L
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTE 265
Query: 116 LYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFN 169
L L N S P + + L+ L + N P I+NL+NL +L L FN
Sbjct: 266 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 315
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 52/136 (38%), Gaps = 1/136 (0%)
Query: 314 LLLHSNVLTYVIPSTFLSLRDIXXXXXXXXXXXXXXX-XDIGNLKVVVGIDLSRNNLSDS 372
L LHSNVL + + F L + L + + L R L +
Sbjct: 61 LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120
Query: 373 IPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLE 432
P + GL+ L + L N LQ ++ DL +L L L N S R+F L L+
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180
Query: 433 YLNLSFNRLKGEIPSG 448
L L NR+ P
Sbjct: 181 RLLLHQNRVAHVHPHA 196
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 52/136 (38%), Gaps = 1/136 (0%)
Query: 314 LLLHSNVLTYVIPSTFLSLRDIXXXXXXXXXXXXXXX-XDIGNLKVVVGIDLSRNNLSDS 372
L LHSNVL + + F L + L + + L R L +
Sbjct: 60 LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 119
Query: 373 IPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLE 432
P + GL+ L + L N LQ ++ DL +L L L N S R+F L L+
Sbjct: 120 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 179
Query: 433 YLNLSFNRLKGEIPSG 448
L L NR+ P
Sbjct: 180 RLLLHQNRVAHVHPHA 195
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 359 VVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFS 418
V DLS++ + + +V ++L +LA N++ + L L L+LS N
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 419 GFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMG 461
R FE L LE L+LS+N ++ D SF+G
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRA----------LGDQSFLG 369
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 11/153 (7%)
Query: 362 IDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLDLSNNSFSGF 420
+ L++N ++ GL++L +L+ N L GSI + + L LE LDLS N
Sbjct: 304 LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRAL 362
Query: 421 IPRSFEKLLYLEYLNLSFNRLKGEIPSG--ESFANFSDNSFMGNSFLCGSPNLQVPPRKD 478
+SF L L+ L L N+LK +P G + + N + C P + R
Sbjct: 363 GDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 421
Query: 479 IKTSPHRKSRKNTRSSAR------LPSSCEILP 505
K S + S + P+S ++P
Sbjct: 422 NKNSQKEQGSAKCSGSGKPVRSIICPTSASLVP 454
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 111 SNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTI-ANLRNLQWLDLSFN 169
++LE+L L +N + + + + L L + N F G+I S + NL L+ LDLS+N
Sbjct: 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN 357
Query: 170 YXXXXXXXXXXXXXXRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYM 220
+ NLK + L NQL + P + + TSL+ I++
Sbjct: 358 HIRALGDQSFL-----GLPNLKELALDTNQLKSV-PDGIFDRLTSLQKIWL 402
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%)
Query: 352 DIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLD 411
++ N K + IDLS N +S ++ L L+YN+L+ P + L+SL L
Sbjct: 49 ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108
Query: 412 LSNNSFSGFIPRSFEKLLYLEYLNLSFNRL 441
L N S +F L L +L + N L
Sbjct: 109 LHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 397 IPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442
+P+ L + + L +DLSNN S +SF + L L LS+NRL+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 364 LSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLDLSNNSFSGFIP 422
L N ++ P V L NL L N+L G++P + D L L LDL N +
Sbjct: 47 LHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPS 105
Query: 423 RSFEKLLYLEYLNLSFNRLKGEIPSG 448
F++L++L+ L + N+L E+P G
Sbjct: 106 AVFDRLVHLKELFMCCNKLT-ELPRG 130
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 353 IGNLKVVVGIDLSRNNL--SDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFL 410
+GNL+ +DLS N++ SD + LS+L +L++N+ G ++ + LE L
Sbjct: 346 LGNLQT---LDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELL 402
Query: 411 DLSNNSFSGFIPRS-FEKLLYLEYLNLSF 438
DL+ P+S F+ L +L+ LNL++
Sbjct: 403 DLAFTRLHINAPQSPFQNLHFLQVLNLTY 431
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 380 LSNLAFFSLAYNKLQGSIPESL--GDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLS 437
L NL L++N ++ S SL +L L+ L+LS+N G ++F++ LE L+L+
Sbjct: 346 LGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLA 405
Query: 438 FNRLKGEIP 446
F RL P
Sbjct: 406 FTRLHINAP 414
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 9/158 (5%)
Query: 286 RLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSN---VLTYVIPSTFLSLRDIXXXXXXX 342
R+ EL L G +P+ I ++ L+ L+L++N L + ++F SLRD+
Sbjct: 278 RVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMR 336
Query: 343 XXXXXXXXXDIGNLKVVVGIDLSRNNL--SDSIPTVIGGLSNLAFFSLAYNKLQGSIPES 400
+ L+ + +DLS +++ SD + L +L + +L+YN+ G ++
Sbjct: 337 KLDLGTRCLE--KLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQA 394
Query: 401 LGDLRSLEFLDLSNNSFSGFIPRS-FEKLLYLEYLNLS 437
+ LE LD++ P S F+ L L LNLS
Sbjct: 395 FKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLS 432
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 359 VVGIDLSRNNLSDSIPTVIGGL--SNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNS 416
+ + L+ N L + + GL +NL L+YN L S L SL +L L N+
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNN 283
Query: 417 FSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFL 465
PRSF L L YL+L K + S S N D SF +L
Sbjct: 284 IQRLSPRSFYGLSNLRYLSLKRAFTKQSV-SLASHPNIDDFSFQWLKYL 331
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 352 DIGN-----LKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSL--AYNKLQGSIPE----- 399
D+GN L + + L NN+ P GLSNL + SL A+ K S+
Sbjct: 262 DVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNID 321
Query: 400 --SLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFS 455
S L+ LE+L++ +N+ +F L+ L+YL+LS + + E+F + +
Sbjct: 322 DFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLA 379
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 362 IDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESL-GDLRSLEFLDLSNNSFSGF 420
+DL N+L V L++L L NKLQ S+P + L SL +L+LS N
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 421 IPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
F+KL L+ L L+ N+L+ +P G
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQ-SLPDG 118
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 376 VIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLDLSNNSFSGFIPRSFEKLLYLEYL 434
V L++L + +L+ N+LQ S+P + D L L+ L L+ N F+KL L+ L
Sbjct: 71 VFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL 129
Query: 435 NLSFNRLKGEIPSG 448
L N+LK +P G
Sbjct: 130 RLYQNQLK-SVPDG 142
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 372 SIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLDLSNNSFSGFIPRSFEKLLY 430
S+PT I + + L N L+ S+P + D L SL L L N F KL
Sbjct: 21 SVPTGIP--AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77
Query: 431 LEYLNLSFNRLKGEIPSG 448
L YLNLS N+L+ +P+G
Sbjct: 78 LTYLNLSTNQLQ-SLPNG 94
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 100/418 (23%), Positives = 162/418 (38%), Gaps = 119/418 (28%)
Query: 15 DMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARAX 74
D ++L L ++ +NN +T P L +L+ I +++NQ+ + P
Sbjct: 61 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP------------ 106
Query: 75 XXXXXXXIGEIPHEIGNLHNLEYLVLENN---NFDGPRH-SNLERLYLERNNFSGTIPSF 130
+ NL NL L L NN + D ++ +NL RL L N S
Sbjct: 107 --------------LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS------ 146
Query: 131 IFNASKLS-ILGIRTNSFSGTIPST--IANLRNLQWLDLSFNYXXXXXXXXXXXXXXRNC 187
+ S LS + ++ SF + +ANL L+ LD+S N
Sbjct: 147 --DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK-------L 197
Query: 188 RNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIG---NLINLITMSL 244
NL+ + T NQ+ I P +G L T+L+ + + +G ++IG +L NL + L
Sbjct: 198 TNLESLIATNNQISDITP--LGIL-TNLDELSL-----NGNQLKDIGTLASLTNLTDLDL 249
Query: 245 GINKLTGSIPISXXXXXXXXXXXXXXXXXEGSIPDSLCNLGRLVELQFYDNKLFGSIPAC 304
N+++ P+S L +L EL+ N++ P
Sbjct: 250 ANNQISNLAPLS--------------------------GLTKLTELKLGANQISNISP-- 281
Query: 305 IGKLSPLRNLLLHSNVLTYVIPSTFLSLRDIXXXXXXXXXXXXXXXXDIGNLKVVVGIDL 364
+ L+ L NL L+ N L + P I NLK + + L
Sbjct: 282 LAGLTALTNLELNENQLEDISP--------------------------ISNLKNLTYLTL 315
Query: 365 SRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIP 422
NN+SD P + L+ L A NK+ S SL +L ++ +L +N S P
Sbjct: 316 YFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLTP 369
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 365 SRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRS 424
+ N +SD P +G L+NL SL N+L+ +L L +L LDL+NN S P S
Sbjct: 206 TNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS 261
Query: 425 FEKLLYLEYLNLSFNRLKGEIP 446
L L L L N++ P
Sbjct: 262 --GLTKLTELKLGANQISNISP 281
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 355 NLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSN 414
+L+VV DL + +P + A L NK+ +L++L L L N
Sbjct: 32 HLRVVQCSDLGLEKVPKDLP------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN 85
Query: 415 NSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447
N S P +F L+ LE L LS N+LK E+P
Sbjct: 86 NKISKISPGAFAPLVKLERLYLSKNQLK-ELPE 117
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 355 NLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSN 414
+L+VV DL + +P + A L NK+ +L++L L L N
Sbjct: 32 HLRVVQCSDLGLEKVPKDLP------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN 85
Query: 415 NSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447
N S P +F L+ LE L LS N+LK E+P
Sbjct: 86 NKISKISPGAFAPLVKLERLYLSKNQLK-ELPE 117
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 362 IDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLDLSNNSFSGF 420
++L N L V L+ L SL+ N++Q S+P+ + D L L L L N
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 421 IPRSFEKLLYLEYLNLSFNRLKGEIPSG--ESFANFSDNSFMGNSFLCGSPNL 471
F+KL L+ L L N+LK +P G + + N + C P +
Sbjct: 92 PNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRI 143
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 372 SIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLDLSNNSFSGFIPRSFEKLLY 430
S+PT I S+ L NKLQ S+P + D L L L LS N F+KL
Sbjct: 21 SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77
Query: 431 LEYLNLSFNRLKGEIPSG 448
L L L N+L+ +P+G
Sbjct: 78 LTILYLHENKLQS-LPNG 94
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 352 DIGNLKVVV---GIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLE 408
DI NL +V ++LS N L P GL++L L + ++ + DL+SLE
Sbjct: 170 DIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 409 FLDLSNNSFSGFIPRSFEKLLYLEYLNLSFN 439
L+LS+N+ F L LE ++L+ N
Sbjct: 230 ELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 23/97 (23%)
Query: 366 RNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSF 425
RNN +SIP S A+N++ LG+L+ LE++ + +F
Sbjct: 115 RNNPIESIP------------SYAFNRVPSLRRLDLGELKRLEYISEA----------AF 152
Query: 426 EKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGN 462
E L+ L YLNL LK +IP+ + + GN
Sbjct: 153 EGLVNLRYLNLGMCNLK-DIPNLTALVRLEELELSGN 188
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 352 DIGNLKVVV---GIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLE 408
DI NL +V ++LS N L P GL++L L + ++ + DL+SLE
Sbjct: 170 DIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 409 FLDLSNNSFSGFIPRSFEKLLYLEYLNLSFN 439
L+LS+N+ F L LE ++L+ N
Sbjct: 230 ELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 23/97 (23%)
Query: 366 RNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSF 425
RNN +SIP S A+N++ LG+L+ LE++ + +F
Sbjct: 115 RNNPIESIP------------SYAFNRVPSLRRLDLGELKRLEYISEA----------AF 152
Query: 426 EKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGN 462
E L+ L YLNL LK +IP+ + + GN
Sbjct: 153 EGLVNLRYLNLGMCNLK-DIPNLTALVRLEELELSGN 188
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 354 GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLS 413
G L V+ +DLS N L S+P + L L +++N+L +L L L+ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 414 NNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
N P LE L+L+ N+L E+P+G
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAG 166
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 354 GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLR---SLEFL 410
G L V+ +DLS N L S+P + L L +++N+L S+P LG LR L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 411 DLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
L N P LE L+L+ N+L E+P+G
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAG 166
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 362 IDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFI 421
+D S +L+ S+PT I + + + L N++ P L L LDL NN +
Sbjct: 14 VDCSGKSLA-SVPTGIPTTTQVLY--LYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 422 PRSFEKLLYLEYLNLSFNRLKGEIPSGESFANF 454
F+KL L L+L+ N+LK IP G +F N
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLK-SIPRG-AFDNL 101
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 362 IDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFI 421
+D S +L+ S+PT I + + + L N++ P L L LDL NN +
Sbjct: 14 VDCSGKSLA-SVPTGIPTTTQVLY--LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 422 PRSFEKLLYLEYLNLSFNRLKGEIPSGESFANF 454
F+KL L L+L+ N+LK IP G +F N
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLK-SIPRG-AFDNL 101
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 354 GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLR---SLEFL 410
G L V+ +DLS N L S+P + L L +++N+L S+P LG LR L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 411 DLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
L N P LE L+L+ N+L E+P+G
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAG 166
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 354 GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLR---SLEFL 410
G L V+ +DLS N L S+P + L L +++N+L S+P LG LR L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 411 DLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
L N P LE L+L+ N+L E+P+G
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAG 166
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 362 IDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFI 421
+D S +L+ S+PT I + + + L N++ P L L LDL NN +
Sbjct: 22 VDCSGKSLA-SVPTGIPTTTQVLY--LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 78
Query: 422 PRSFEKLLYLEYLNLSFNRLKGEIPSGESFANF 454
F+KL L L+L+ N+LK IP G +F N
Sbjct: 79 AGVFDKLTQLTQLSLNDNQLK-SIPRG-AFDNL 109
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 99/415 (23%), Positives = 160/415 (38%), Gaps = 113/415 (27%)
Query: 15 DMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARAX 74
D ++L L ++ +NN +T P L +L+ I +++NQ+ + P
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP------------ 102
Query: 75 XXXXXXXIGEIPHEIGNLHNLEYLVLENN---NFDGPRH-SNLERLYLERNNFSGTIPSF 130
+ NL NL L L NN + D ++ +NL RL L N S S
Sbjct: 103 --------------LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI--SA 146
Query: 131 IFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYXXXXXXXXXXXXXXRNCRNL 190
+ + L L N + P +ANL L+ LD+S N NL
Sbjct: 147 LSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSNKVSDISVLAK-------LTNL 196
Query: 191 KVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIG---NLINLITMSLGIN 247
+ + T NQ+ I P +G L T+L+ + + +G ++IG +L NL + L N
Sbjct: 197 ESLIATNNQISDITP--LGIL-TNLDELSL-----NGNQLKDIGTLASLTNLTDLDLANN 248
Query: 248 KLTGSIPISXXXXXXXXXXXXXXXXXEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGK 307
+++ P+S L +L EL+ N++ P +
Sbjct: 249 QISNLAPLS--------------------------GLTKLTELKLGANQISNISP--LAG 280
Query: 308 LSPLRNLLLHSNVLTYVIPSTFLSLRDIXXXXXXXXXXXXXXXXDIGNLKVVVGIDLSRN 367
L+ L NL L+ N L + P I NLK + + L N
Sbjct: 281 LTALTNLELNENQLEDISP--------------------------ISNLKNLTYLTLYFN 314
Query: 368 NLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIP 422
N+SD P + L+ L + NK+ S SL +L ++ +L +N S P
Sbjct: 315 NISDISP--VSSLTKLQRLFFSNNKV--SDVSSLANLTNINWLSAGHNQISDLTP 365
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 365 SRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRS 424
+ N +SD P +G L+NL SL N+L+ +L L +L LDL+NN S P S
Sbjct: 202 TNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS 257
Query: 425 FEKLLYLEYLNLSFNRLKGEIP 446
L L L L N++ P
Sbjct: 258 --GLTKLTELKLGANQISNISP 277
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 24/167 (14%)
Query: 362 IDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFI 421
+DLS N+LS P GL +L + +++Q + +L+SL ++L++N+ +
Sbjct: 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271
Query: 422 PRSFEKLLYLEYLNLSFN-------------RLKGEIPSGESFANFSDN------SFMG- 461
F L +LE ++L N +K PS + + ++G
Sbjct: 272 HDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGE 331
Query: 462 ---NSFLCGSPNLQVPPRKDIKTSPHRKSRKNTRSSARLPSSCEILP 505
N F C +P + PP D+ + + R+S L S I P
Sbjct: 332 LDQNYFTCYAPVIVEPP-ADLNVTEGMAAELKCRASTSLTSVSWITP 377
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 185 RNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINL 239
+N NL+V+DL+ N+L LP+ +G+ L+Y Y + +P E GNL NL
Sbjct: 267 KNLSNLRVLDLSHNRLTS-LPAELGS-CFQLKYFYF-FDNMVTTLPWEFGNLCNL 318
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 23 LQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARAXXXXXXXXI 82
L L +N N +T +P + L + LSHN+LT L P ++G+ + +
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLK-YFYFFDNMV 305
Query: 83 GEIPHEIGNLHNLEYLVLENN 103
+P E GNL NL++L +E N
Sbjct: 306 TTLPWEFGNLCNLQFLGVEGN 326
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 364 LSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPR 423
L+ N+L++ +P I LSNL L++N+L S+P LG L++ +N + +P
Sbjct: 254 LNGNSLTE-LPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFDNMVTT-LPW 310
Query: 424 SFEKLLYLEYLNLSFNRLKGEI 445
F L L++L + N L+ +
Sbjct: 311 EFGNLCNLQFLGVEGNPLEKQF 332
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 354 GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLS 413
G L V+ +DLS N L S+P + L L +++N+L +L L L+ L L
Sbjct: 75 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 414 NNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
N P LE L+L+ N L E+P+G
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAG 167
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 354 GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLR---SLEFL 410
G L V+ +DLS N L S+P + L L +++N+L S+P LG LR L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 411 DLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
L N P LE L+L+ N L E+P+G
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAG 166
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 354 GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLS 413
G L V+ +DLS N L S+P + L L +++N+L +L L L+ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 414 NNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
N P LE L+L+ N L E+P+G
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAG 166
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 359 VVGIDLSRNNLSDSIPTVIGGL--SNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNS 416
+ + LS + LS + T GL +NL L+YN L +S L LE+ L N+
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283
Query: 417 FSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSF 459
S L + YLNL + K I S S D SF
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSI-SLASLPKIDDFSF 325
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 354 GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLR---SLEFL 410
G L V+ +DLS N L S+P + L L +++N+L S+P LG LR L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 411 DLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
L N P LE L+L+ N L E+P+G
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAG 166
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 359 VVGIDLSRNNLSDSIPTVIGGL--SNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNS 416
+ + LS + LS + T GL +NL L+YN L +S L LE+ L N+
Sbjct: 229 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 288
Query: 417 FSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSF 459
S L + YLNL + K I S S D SF
Sbjct: 289 IQHLFSHSLHGLFNVRYLNLKRSFTKQSI-SLASLPKIDDFSF 330
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 359 VVGIDLSRNNLSDSIPTVIGGL--SNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNS 416
+ + LS + LS + T GL +NL L+YN L +S L LE+ L N+
Sbjct: 234 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 293
Query: 417 FSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSF 459
S L + YLNL + K I S S D SF
Sbjct: 294 IQHLFSHSLHGLFNVRYLNLKRSFTKQSI-SLASLPKIDDFSF 335
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 362 IDLSRNNLSD-SIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGF 420
+ ++ N+ D ++ V +NL F L+ +L+ L L+ L++S+N+
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512
Query: 421 IPRSFEKLLYLEYLNLSFNRL---KG---EIPSGESFANFSDNS 458
+ +L L L+ SFNR+ KG P +F N ++NS
Sbjct: 513 DSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 99/418 (23%), Positives = 161/418 (38%), Gaps = 119/418 (28%)
Query: 15 DMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARAX 74
D ++L L ++ +NN +T P L +L+ I +++NQ+ + P
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP------------ 107
Query: 75 XXXXXXXIGEIPHEIGNLHNLEYLVLENN---NFDGPRH-SNLERLYLERNNFSGTIPSF 130
+ NL NL L L NN + D ++ +NL RL L N S
Sbjct: 108 --------------LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS------ 147
Query: 131 IFNASKLS-ILGIRTNSFSGTIPST--IANLRNLQWLDLSFNYXXXXXXXXXXXXXXRNC 187
+ S LS + ++ SF + +ANL L+ LD+S N
Sbjct: 148 --DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-------KVSDISVLAKL 198
Query: 188 RNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIG---NLINLITMSL 244
NL+ + T NQ+ I P +G L T+L+ + + +G ++IG +L NL + L
Sbjct: 199 TNLESLIATNNQISDITP--LGIL-TNLDELSL-----NGNQLKDIGTLASLTNLTDLDL 250
Query: 245 GINKLTGSIPISXXXXXXXXXXXXXXXXXEGSIPDSLCNLGRLVELQFYDNKLFGSIPAC 304
N+++ P+S L +L EL+ N++ P
Sbjct: 251 ANNQISNLAPLS--------------------------GLTKLTELKLGANQISNISP-- 282
Query: 305 IGKLSPLRNLLLHSNVLTYVIPSTFLSLRDIXXXXXXXXXXXXXXXXDIGNLKVVVGIDL 364
+ L+ L NL L+ N L + P I NLK + + L
Sbjct: 283 LAGLTALTNLELNENQLEDISP--------------------------ISNLKNLTYLTL 316
Query: 365 SRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIP 422
NN+SD P + L+ L NK+ S SL +L ++ +L +N S P
Sbjct: 317 YFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP 370
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 365 SRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRS 424
+ N +SD P +G L+NL SL N+L+ +L L +L LDL+NN S P S
Sbjct: 207 TNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS 262
Query: 425 FEKLLYLEYLNLSFNRLKGEIP 446
L L L L N++ P
Sbjct: 263 --GLTKLTELKLGANQISNISP 282
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 362 IDLSRNNLSD-SIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGF 420
+ ++ N+ D ++ V +NL F L+ +L+ L L+ L++S+N+
Sbjct: 448 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 507
Query: 421 IPRSFEKLLYLEYLNLSFNRL---KG---EIPSGESFANFSDNS 458
+ +L L L+ SFNR+ KG P +F N ++NS
Sbjct: 508 DSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 551
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 354 GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLR---SLEFL 410
G L V+ +DLS N L S+P + L L +++N+L S+P LG LR L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 411 DLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
L N P LE L+L+ N L E+P+G
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAG 166
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 354 GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLR---SLEFL 410
G L V+ +DLS N L S+P + L L +++N+L S+P LG LR L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 411 DLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
L N P LE L+L+ N L E+P+G
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAG 166
>pdb|3G7U|A Chain A, Crystal Structure Of Putative Dna Modification
Methyltransferase Encoded Within Prophage Cp-933r
(E.Coli)
Length = 376
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 390 YNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSF 438
Y KL G IP ++GD S+ L NN SG K++ Y +LSF
Sbjct: 227 YEKLWGQIPRNVGDTESIA--KLKNNIISGCTGTLHSKIVQERYASLSF 273
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 99/415 (23%), Positives = 159/415 (38%), Gaps = 113/415 (27%)
Query: 15 DMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARAX 74
D ++L L ++ +NN +T P L +L+ I +++NQ+ + P
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP------------ 102
Query: 75 XXXXXXXIGEIPHEIGNLHNLEYLVLENN---NFDGPRH-SNLERLYLERNNFSGTIPSF 130
+ NL NL L L NN + D ++ +NL RL L N S S
Sbjct: 103 --------------LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI--SA 146
Query: 131 IFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYXXXXXXXXXXXXXXRNCRNL 190
+ + L L N + P +ANL L+ LD+S N NL
Sbjct: 147 LSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSNKVSDISVLAK-------LTNL 196
Query: 191 KVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIG---NLINLITMSLGIN 247
+ + T NQ+ I P +G L T+L+ + + +G ++IG +L NL + L N
Sbjct: 197 ESLIATNNQISDITP--LGIL-TNLDELSL-----NGNQLKDIGTLASLTNLTDLDLANN 248
Query: 248 KLTGSIPISXXXXXXXXXXXXXXXXXEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGK 307
+++ P+S L +L EL+ N++ P +
Sbjct: 249 QISNLAPLS--------------------------GLTKLTELKLGANQISNISP--LAG 280
Query: 308 LSPLRNLLLHSNVLTYVIPSTFLSLRDIXXXXXXXXXXXXXXXXDIGNLKVVVGIDLSRN 367
L+ L NL L+ N L + P I NLK + + L N
Sbjct: 281 LTALTNLELNENQLEDISP--------------------------ISNLKNLTYLTLYFN 314
Query: 368 NLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIP 422
N+SD P + L+ L NK+ S SL +L ++ +L +N S P
Sbjct: 315 NISDISP--VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP 365
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 365 SRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRS 424
+ N +SD P +G L+NL SL N+L+ +L L +L LDL+NN S P S
Sbjct: 202 TNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS 257
Query: 425 FEKLLYLEYLNLSFNRLKGEIP 446
L L L L N++ P
Sbjct: 258 --GLTKLTELKLGANQISNISP 277
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 23/99 (23%)
Query: 366 RNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSF 425
RNN +SIP S A+N++ + LG+L+ LE++ +F
Sbjct: 155 RNNPIESIP------------SYAFNRVPSLMRLDLGELKKLEYIS----------EGAF 192
Query: 426 EKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSF 464
E L L+YLNL +K ++P+ + GN F
Sbjct: 193 EGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHF 230
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 372 SIPTVIGGL-SNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLY 430
S+ +V G+ + L N++ P L L +L+L+ N + F+KL
Sbjct: 30 SLASVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89
Query: 431 LEYLNLSFNRLKGEIPSG 448
L +L L N+LK IP G
Sbjct: 90 LTHLALHINQLK-SIPMG 106
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%)
Query: 354 GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLS 413
G + V +DLS N ++ + + NL L N + +S L SLE LDLS
Sbjct: 23 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 414 NNSFSGFIPRSFEKLLYLEYLNL 436
N S F+ L L +LNL
Sbjct: 83 YNYLSNLSSSWFKPLSSLTFLNL 105
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%)
Query: 354 GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLS 413
G + V +DLS N ++ + + NL L N + +S L SLE LDLS
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 414 NNSFSGFIPRSFEKLLYLEYLNL 436
N S F+ L L +LNL
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNL 131
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 53/133 (39%), Gaps = 6/133 (4%)
Query: 112 NLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYX 171
+LE L L N S P N L LG+R+N L NL LD+S N
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN-- 114
Query: 172 XXXXXXXXXXXXXRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPE 231
++ NLK +++ N L I + L+ SLE + + C + E
Sbjct: 115 ---KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN-SLEQLTLEKCNLTSIPTE 170
Query: 232 EIGNLINLITMSL 244
+ +L LI + L
Sbjct: 171 ALSHLHGLIVLRL 183
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%)
Query: 359 VVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFS 418
+ + ++ NL+ + L L F +L+YN + L +L L+ + L +
Sbjct: 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285
Query: 419 GFIPRSFEKLLYLEYLNLSFNRL 441
P +F L YL LN+S N+L
Sbjct: 286 VVEPYAFRGLNYLRVLNVSGNQL 308
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 60/159 (37%)
Query: 279 DSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDIXXX 338
D + L EL+ +N + P L LR L L SN L + F L ++
Sbjct: 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109
Query: 339 XXXXXXXXXXXXXDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIP 398
+L + +++ N+L GL++L +L L
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169
Query: 399 ESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLS 437
E+L L L L L + + + SF++L L+ L +S
Sbjct: 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 359 VVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFS 418
V +DLS + V L +L +LAYNK+ E+ L +L+ L+LS N
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327
Query: 419 GFIPRSFEKLLYLEYLNLSFNRL 441
+F L + Y++L N +
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHI 350
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%)
Query: 356 LKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNN 415
LK + ++L+ N ++ GL NL +L+YN L + L + ++DL N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 416 SFSGFIPRSFEKLLYLEYLNLSFNRL 441
+ ++F+ L L+ L+L N L
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNAL 374
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 377 IGGLSNLAFFSLAYNKLQG-SIPESLGDLRSLEFLDLSNN 415
IG L L ++A+N +Q +PE +L +LE LDLS+N
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 377 IGGLSNLAFFSLAYNKLQG-SIPESLGDLRSLEFLDLSNN 415
IG L L ++A+N +Q +PE +L +LE LDLS+N
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 21/103 (20%)
Query: 355 NLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKL---QGSIPESLGDLRSLEFLD 411
LK + +D+SRN +P + F +L+ + + IP++L E LD
Sbjct: 411 TLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTL------EVLD 463
Query: 412 LSNN---SFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESF 451
+SNN SFS F+PR L+ L +S N+LK +P F
Sbjct: 464 VSNNNLDSFSLFLPR-------LQELYISRNKLKT-LPDASLF 498
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 391 NKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNL 436
N ++G SLG SLE LDLS+N S F L L+YLNL
Sbjct: 89 NTIEGDAFYSLG---SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 131
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 377 IGGLSNLAFFSLAYNKLQG-SIPESLGDLRSLEFLDLSNN 415
IG L L ++A+N +Q +PE +L +LE LDLS+N
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 20/94 (21%)
Query: 355 NLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKL---QGSIPESLGDLRSLEFLD 411
LK + +D+SRN +P + F +L+ + + IP++L E LD
Sbjct: 385 TLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTL------EVLD 437
Query: 412 LSNN---SFSGFIPRSFEKLLYLEYLNLSFNRLK 442
+SNN SFS F+PR L+ L +S N+LK
Sbjct: 438 VSNNNLDSFSLFLPR-------LQELYISRNKLK 464
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 391 NKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNL 436
N ++G SLG SLE LDLS+N S F L L+YLNL
Sbjct: 63 NTIEGDAFYSLG---SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 377 IGGLSNLAFFSLAYNKLQG-SIPESLGDLRSLEFLDLSNN 415
IG L L ++A+N +Q +PE +L +LE LDLS+N
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 377 IGGLSNLAFFSLAYNKLQG-SIPESLGDLRSLEFLDLSNN 415
IG L L ++A+N +Q +PE +L +LE LDLS+N
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+D + N+L D C + L++++N +TG V R L +++ + HN
Sbjct: 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDL---HNNRIMS 464
Query: 61 IPRDIGNLTSARAXXXXXXXXIGEIPHEIGN-LHNLEYLVLENNNFD 106
IP+D+ +L A + +P + + L +L+Y+ L +N +D
Sbjct: 465 IPKDVTHL-QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 353 IGNLKVVVGIDLSRNNL--SDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFL 410
+ NL+ + +DLS +++ SD + LS+L +L+YN+ E+ + LE L
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405
Query: 411 DLSNNSFSGFIPRS-FEKLLYLEYLNLSFNRLKGEIPSGESF 451
DL+ +S F+ L L+ LNLS + L +I S + F
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL--DISSEQLF 445
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 19 HLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIP 62
HLP+L++L + NN +T L + +L +SL NQ++ ++P
Sbjct: 127 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 168
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 58/165 (35%), Gaps = 51/165 (30%)
Query: 362 IDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQ--GSIPESLGDLRSLEFLDLSNNSFS- 418
+D S N L+D++ G L+ L L N+L+ I E ++SL+ LD+S NS S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 419 ---------------------------------------------GFIPRSFEKLLYLEY 433
IP+ KL L+
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQE 448
Query: 434 LNLSFNRLKGEIPSG--ESFANFSDNSFMGNSFLCGSPNLQVPPR 476
LN++ N+LK +P G + + N + C P + R
Sbjct: 449 LNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 492
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 388 LAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447
L N ++ P + + L +DLSNN S P +F+ L L L L N++ E+P
Sbjct: 39 LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPK 97
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 19 HLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIP 62
HLP+L++L + NN +T L + +L +SL NQ++ ++P
Sbjct: 150 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 191
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 19 HLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIP 62
HLP+L++L + NN +T L + +L +SL NQ++ ++P
Sbjct: 150 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 191
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 19 HLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIP 62
HLP+L++L + NN +T L + +L +SL NQ++ ++P
Sbjct: 150 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 191
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 19 HLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIP 62
HLP+L++L + NN +T L + +L +SL NQ++ ++P
Sbjct: 129 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 170
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 388 LAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447
L N ++ P + + L +DLSNN S P +F+ L L L L N++ E+P
Sbjct: 39 LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPK 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,185,967
Number of Sequences: 62578
Number of extensions: 493551
Number of successful extensions: 1633
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 981
Number of HSP's gapped (non-prelim): 424
length of query: 508
length of database: 14,973,337
effective HSP length: 103
effective length of query: 405
effective length of database: 8,527,803
effective search space: 3453760215
effective search space used: 3453760215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)