Query 045861
Match_columns 508
No_of_seqs 267 out of 3772
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 10:39:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.1E-59 1.8E-63 495.1 38.1 483 1-493 183-765 (768)
2 3rgz_A Protein brassinosteroid 100.0 5.5E-55 1.9E-59 464.1 37.7 457 1-465 156-717 (768)
3 3t6q_A CD180 antigen; protein- 100.0 1.1E-54 3.8E-59 451.8 37.2 462 1-471 38-566 (606)
4 1ziw_A TOLL-like receptor 3; i 100.0 7.5E-52 2.6E-56 436.2 42.6 231 240-470 384-627 (680)
5 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-52 8.1E-57 434.3 36.7 457 2-472 17-565 (606)
6 3t6q_A CD180 antigen; protein- 100.0 2.5E-50 8.6E-55 419.1 39.5 458 1-465 17-536 (606)
7 2z63_A TOLL-like receptor 4, v 100.0 1.1E-49 3.7E-54 411.5 34.6 452 2-472 13-538 (570)
8 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-48 4E-53 411.9 41.8 455 1-463 30-595 (680)
9 3j0a_A TOLL-like receptor 5; m 100.0 4.7E-50 1.6E-54 430.5 29.3 460 2-471 10-566 (844)
10 3vq2_A TLR4, TOLL-like recepto 100.0 2.1E-48 7.3E-53 404.6 35.2 431 22-465 12-534 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 4.6E-48 1.6E-52 399.3 30.6 457 1-469 33-560 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 3.1E-48 1.1E-52 398.6 27.2 449 2-470 11-515 (549)
13 3j0a_A TOLL-like receptor 5; m 100.0 2E-46 6.7E-51 402.5 31.8 433 24-466 7-540 (844)
14 2z7x_B TOLL-like receptor 1, v 100.0 3.2E-47 1.1E-51 388.2 24.2 448 1-472 5-488 (520)
15 4eco_A Uncharacterized protein 100.0 6.5E-46 2.2E-50 385.7 25.2 437 21-472 81-633 (636)
16 2z81_A CD282 antigen, TOLL-lik 100.0 5.7E-45 2E-49 374.3 27.3 433 1-447 31-515 (549)
17 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-43 4.4E-48 371.0 37.3 462 2-471 37-586 (635)
18 4ecn_A Leucine-rich repeat pro 100.0 4.1E-45 1.4E-49 385.6 22.7 437 21-473 323-874 (876)
19 4eco_A Uncharacterized protein 100.0 6.5E-45 2.2E-49 378.2 23.1 413 45-466 81-601 (636)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.8E-44 9.5E-49 369.5 25.0 446 2-471 37-516 (562)
21 2z7x_B TOLL-like receptor 1, v 100.0 3.6E-44 1.2E-48 365.7 20.5 433 1-447 26-486 (520)
22 4ecn_A Leucine-rich repeat pro 100.0 3.2E-43 1.1E-47 371.3 26.3 411 45-466 323-841 (876)
23 4g8a_A TOLL-like receptor 4; l 100.0 8.8E-42 3E-46 357.1 31.8 439 1-448 57-586 (635)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.2E-42 3.2E-46 350.8 19.5 434 1-448 57-516 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 4.9E-40 1.7E-44 329.6 30.7 140 309-448 275-414 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 7.6E-40 2.6E-44 328.2 30.0 378 2-422 16-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 1.6E-38 5.4E-43 316.0 25.7 391 21-469 11-433 (454)
28 1o6v_A Internalin A; bacterial 100.0 1.8E-36 6.1E-41 304.0 34.6 356 6-443 34-389 (466)
29 1jl5_A Outer protein YOPM; leu 100.0 1.5E-37 5.1E-42 309.0 25.2 388 1-448 16-435 (454)
30 2id5_A Lingo-1, leucine rich r 100.0 3.4E-37 1.2E-41 310.7 27.8 329 136-470 33-361 (477)
31 1o6v_A Internalin A; bacterial 100.0 2.4E-35 8.3E-40 295.7 34.0 339 1-419 51-389 (466)
32 2id5_A Lingo-1, leucine rich r 100.0 6.5E-36 2.2E-40 301.3 24.6 321 24-371 14-334 (477)
33 3bz5_A Internalin-J, INLJ; leu 100.0 2.5E-35 8.5E-40 293.3 26.6 342 18-448 39-393 (457)
34 3o6n_A APL1; leucine-rich repe 100.0 3E-34 1E-38 281.3 26.9 333 112-469 46-378 (390)
35 3bz5_A Internalin-J, INLJ; leu 100.0 5E-34 1.7E-38 283.9 27.3 347 1-427 47-396 (457)
36 3o6n_A APL1; leucine-rich repe 100.0 6.1E-34 2.1E-38 279.1 25.0 315 133-470 43-357 (390)
37 1ogq_A PGIP-2, polygalacturona 100.0 2.8E-34 9.4E-39 272.1 21.0 255 214-470 51-309 (313)
38 4fmz_A Internalin; leucine ric 100.0 7.5E-33 2.6E-37 267.1 29.3 307 89-442 40-346 (347)
39 3oja_B Anopheles plasmodium-re 100.0 4.3E-33 1.5E-37 287.8 27.1 333 112-469 52-384 (597)
40 4fmz_A Internalin; leucine ric 100.0 1.6E-32 5.4E-37 264.8 29.1 308 40-418 39-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 4.9E-33 1.7E-37 287.3 25.0 314 133-469 49-362 (597)
42 2ft3_A Biglycan; proteoglycan, 100.0 4E-31 1.4E-35 253.2 25.3 301 11-368 18-331 (332)
43 1xku_A Decorin; proteoglycan, 100.0 1.4E-30 4.8E-35 249.2 27.5 291 22-368 32-330 (330)
44 1ogq_A PGIP-2, polygalacturona 100.0 2.3E-31 7.9E-36 252.0 19.8 252 188-443 50-305 (313)
45 1z7x_W Ribonuclease inhibitor; 100.0 1.9E-34 6.4E-39 289.6 -1.6 387 21-442 3-440 (461)
46 1z7x_W Ribonuclease inhibitor; 100.0 8.9E-34 3E-38 284.6 0.4 380 45-466 3-441 (461)
47 1xku_A Decorin; proteoglycan, 100.0 9.7E-30 3.3E-34 243.3 27.7 269 135-440 52-330 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 8.1E-30 2.8E-34 244.0 24.1 268 135-440 54-331 (332)
49 3ogk_B Coronatine-insensitive 100.0 2.5E-31 8.5E-36 275.4 5.1 405 11-420 63-528 (592)
50 3zyj_A Leucine-rich repeat-con 100.0 2.2E-28 7.7E-33 243.2 23.1 250 190-445 45-295 (440)
51 3zyi_A Leucine-rich repeat-con 100.0 2.8E-28 9.7E-33 243.4 23.3 251 190-446 56-307 (452)
52 2z66_A Variable lymphocyte rec 100.0 2E-28 6.8E-33 231.7 20.2 255 214-469 29-291 (306)
53 2z80_A TOLL-like receptor 2, v 100.0 5.2E-29 1.8E-33 240.6 16.3 255 214-469 53-318 (353)
54 2z66_A Variable lymphocyte rec 100.0 8.9E-28 3E-32 227.2 21.0 279 138-448 10-293 (306)
55 1ozn_A Reticulon 4 receptor; N 100.0 3.7E-28 1.3E-32 227.3 17.6 233 237-469 32-265 (285)
56 3ogk_B Coronatine-insensitive 100.0 1E-30 3.4E-35 270.9 -0.7 397 38-442 66-526 (592)
57 2z80_A TOLL-like receptor 2, v 100.0 3.1E-28 1.1E-32 235.1 16.5 257 190-447 54-319 (353)
58 3zyi_A Leucine-rich repeat-con 100.0 7.4E-27 2.5E-31 233.1 25.5 228 188-418 75-303 (452)
59 3zyj_A Leucine-rich repeat-con 100.0 7.7E-27 2.6E-31 232.2 25.2 231 237-469 64-296 (440)
60 4fcg_A Uncharacterized protein 99.9 3.3E-27 1.1E-31 224.8 18.4 224 214-442 82-314 (328)
61 1ozn_A Reticulon 4 receptor; N 99.9 4.8E-27 1.6E-31 219.7 18.4 234 214-448 33-267 (285)
62 2p1m_B Transport inhibitor res 99.9 1.2E-29 4E-34 263.0 -2.3 427 10-440 55-542 (594)
63 4fcg_A Uncharacterized protein 99.9 4.4E-26 1.5E-30 217.0 19.4 227 158-419 80-315 (328)
64 1wwl_A Monocyte differentiatio 99.9 2E-27 6.9E-32 225.1 8.1 248 184-442 39-309 (312)
65 2z62_A TOLL-like receptor 4, v 99.9 1.4E-25 4.8E-30 208.7 20.3 208 262-471 29-243 (276)
66 3o53_A Protein LRIM1, AGAP0063 99.9 2.6E-26 8.8E-31 218.0 14.2 257 189-460 11-270 (317)
67 1p9a_G Platelet glycoprotein I 99.9 2E-25 6.8E-30 208.5 19.5 207 257-470 6-213 (290)
68 2o6q_A Variable lymphocyte rec 99.9 5.2E-25 1.8E-29 204.0 20.9 183 286-469 38-222 (270)
69 3o53_A Protein LRIM1, AGAP0063 99.9 1.3E-26 4.4E-31 220.0 10.1 241 185-440 31-273 (317)
70 2p1m_B Transport inhibitor res 99.9 1.1E-28 3.6E-33 255.8 -5.1 395 16-418 100-544 (594)
71 3oja_A Leucine-rich immune mol 99.9 3.7E-26 1.3E-30 229.2 12.5 245 214-472 35-289 (487)
72 1wwl_A Monocyte differentiatio 99.9 1.1E-26 3.7E-31 220.0 8.0 243 214-465 44-309 (312)
73 3oja_A Leucine-rich immune mol 99.9 1.8E-25 6.3E-30 224.2 15.1 221 235-469 32-254 (487)
74 3g06_A SSPH2 (leucine-rich rep 99.9 7.3E-24 2.5E-28 216.8 27.0 115 22-173 41-155 (622)
75 2z62_A TOLL-like receptor 4, v 99.9 1.9E-24 6.5E-29 201.0 19.0 211 237-448 28-243 (276)
76 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-23 3.9E-28 215.4 26.1 258 1-329 45-304 (622)
77 2o6q_A Variable lymphocyte rec 99.9 7.7E-24 2.6E-28 196.1 21.8 207 238-447 17-223 (270)
78 1p9a_G Platelet glycoprotein I 99.9 1.4E-22 4.9E-27 189.1 21.0 206 233-445 6-211 (290)
79 3rfs_A Internalin B, repeat mo 99.9 2.8E-23 9.7E-28 192.4 15.4 205 233-448 37-241 (272)
80 3rfs_A Internalin B, repeat mo 99.9 2.3E-22 7.9E-27 186.3 17.7 201 241-447 23-223 (272)
81 2xwt_C Thyrotropin receptor; s 99.9 4.3E-22 1.5E-26 180.9 16.0 195 263-462 33-236 (239)
82 2xwt_C Thyrotropin receptor; s 99.9 2E-22 6.9E-27 183.1 13.4 198 237-440 31-237 (239)
83 4glp_A Monocyte differentiatio 99.9 2.2E-22 7.4E-27 190.3 13.5 201 236-442 90-307 (310)
84 3m19_A Variable lymphocyte rec 99.9 1.3E-21 4.4E-26 179.1 18.1 178 264-444 17-194 (251)
85 2ast_B S-phase kinase-associat 99.9 4.3E-23 1.5E-27 197.8 8.6 251 190-448 49-312 (336)
86 3goz_A Leucine-rich repeat-con 99.9 2.4E-23 8.3E-28 201.3 6.8 251 193-444 3-299 (362)
87 3m19_A Variable lymphocyte rec 99.9 1.3E-21 4.3E-26 179.1 17.8 182 285-469 14-197 (251)
88 2ca6_A RAN GTPase-activating p 99.9 1.7E-23 5.7E-28 204.5 3.5 188 258-445 91-319 (386)
89 4glp_A Monocyte differentiatio 99.9 4.9E-22 1.7E-26 187.9 13.3 223 238-465 65-307 (310)
90 2ca6_A RAN GTPase-activating p 99.9 2.2E-23 7.6E-28 203.6 3.9 190 233-422 90-320 (386)
91 1h6u_A Internalin H; cell adhe 99.9 2.6E-21 9E-26 182.4 17.0 193 234-442 38-230 (308)
92 3goz_A Leucine-rich repeat-con 99.9 4.8E-23 1.6E-27 199.2 5.1 251 217-467 2-299 (362)
93 2ast_B S-phase kinase-associat 99.9 8.4E-22 2.9E-26 188.8 11.9 242 214-464 48-305 (336)
94 1h6u_A Internalin H; cell adhe 99.9 6.3E-21 2.1E-25 179.8 15.0 195 257-466 37-231 (308)
95 4ay9_X Follicle-stimulating ho 99.8 1.4E-20 4.9E-25 180.9 14.6 198 192-394 13-215 (350)
96 2v9t_B SLIT homolog 2 protein 99.8 6.2E-20 2.1E-24 163.9 13.9 152 288-442 14-165 (220)
97 2o6s_A Variable lymphocyte rec 99.8 7.6E-20 2.6E-24 162.2 14.0 174 2-209 13-186 (208)
98 2xot_A Amphoterin-induced prot 99.8 4.8E-20 1.6E-24 177.9 13.4 176 264-442 21-202 (361)
99 2v9t_B SLIT homolog 2 protein 99.8 8.9E-20 3.1E-24 162.9 12.5 156 312-470 14-170 (220)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 9.3E-20 3.2E-24 162.8 12.4 157 288-447 14-171 (220)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 1.9E-19 6.4E-24 160.8 14.0 157 312-471 14-172 (220)
102 2o6s_A Variable lymphocyte rec 99.8 2.5E-19 8.4E-24 158.9 13.8 156 286-448 29-184 (208)
103 4ay9_X Follicle-stimulating ho 99.8 7.2E-19 2.5E-23 169.0 17.9 241 162-416 12-257 (350)
104 3e6j_A Variable lymphocyte rec 99.8 1.2E-18 4E-23 156.7 15.6 156 287-446 21-176 (229)
105 3e6j_A Variable lymphocyte rec 99.8 1.8E-18 6E-23 155.5 15.8 152 23-201 21-172 (229)
106 2xot_A Amphoterin-induced prot 99.8 9.9E-19 3.4E-23 168.7 14.4 176 240-418 21-202 (361)
107 1h6t_A Internalin B; cell adhe 99.8 1.5E-18 5.3E-23 161.9 14.5 171 234-442 43-213 (291)
108 3cvr_A Invasion plasmid antige 99.8 2.6E-18 8.7E-23 173.7 16.3 182 238-447 60-248 (571)
109 1h6t_A Internalin B; cell adhe 99.8 2.1E-18 7.2E-23 161.0 13.5 168 214-419 47-214 (291)
110 3cvr_A Invasion plasmid antige 99.8 4.4E-18 1.5E-22 172.0 14.4 188 214-429 60-254 (571)
111 4ezg_A Putative uncharacterize 99.8 4.6E-18 1.6E-22 149.2 12.1 150 285-442 44-194 (197)
112 1w8a_A SLIT protein; signaling 99.7 1.2E-17 4.1E-22 145.6 12.0 155 312-469 11-166 (192)
113 4ezg_A Putative uncharacterize 99.7 1.7E-17 5.7E-22 145.6 12.8 154 258-419 41-195 (197)
114 1m9s_A Internalin B; cell inva 99.7 2.7E-17 9.3E-22 168.1 16.1 173 233-419 39-211 (605)
115 1m9s_A Internalin B; cell inva 99.7 2.6E-17 8.9E-22 168.2 16.0 171 258-442 40-210 (605)
116 1w8a_A SLIT protein; signaling 99.7 4.6E-17 1.6E-21 141.9 12.8 133 336-471 11-145 (192)
117 2wfh_A SLIT homolog 2 protein 99.7 5.5E-17 1.9E-21 141.4 12.6 128 337-469 14-143 (193)
118 1xeu_A Internalin C; cellular 99.7 2.8E-17 9.5E-22 150.9 10.7 166 238-442 20-185 (263)
119 3sb4_A Hypothetical leucine ri 99.7 1.2E-17 4.2E-22 158.9 8.1 288 20-363 24-327 (329)
120 1xeu_A Internalin C; cellular 99.7 6.9E-17 2.4E-21 148.3 11.7 165 22-203 20-187 (263)
121 4fs7_A Uncharacterized protein 99.7 2.2E-15 7.5E-20 147.1 22.7 335 33-434 59-393 (394)
122 1dce_A Protein (RAB geranylger 99.7 1.9E-19 6.6E-24 182.9 -7.5 190 235-447 347-551 (567)
123 2wfh_A SLIT homolog 2 protein 99.7 1.2E-16 4E-21 139.3 11.2 131 312-446 13-143 (193)
124 2ell_A Acidic leucine-rich nuc 99.7 2.6E-16 9E-21 134.2 12.9 138 308-448 23-165 (168)
125 3sb4_A Hypothetical leucine ri 99.7 2.6E-16 9E-21 149.7 12.9 250 187-447 24-314 (329)
126 2ell_A Acidic leucine-rich nuc 99.7 4.6E-16 1.6E-20 132.7 12.4 139 19-176 22-164 (168)
127 4fdw_A Leucine rich hypothetic 99.7 8.7E-15 3E-19 142.2 22.0 247 183-442 131-383 (401)
128 4fs7_A Uncharacterized protein 99.6 1.2E-14 4E-19 141.9 22.0 318 57-439 59-376 (394)
129 2je0_A Acidic leucine-rich nuc 99.6 6.6E-16 2.3E-20 128.8 11.1 128 309-438 17-149 (149)
130 1dce_A Protein (RAB geranylger 99.6 9.7E-19 3.3E-23 177.7 -7.6 217 185-436 346-567 (567)
131 2o6r_A Variable lymphocyte rec 99.6 1.4E-15 4.9E-20 130.8 12.4 133 311-446 9-141 (177)
132 2je0_A Acidic leucine-rich nuc 99.6 1E-15 3.5E-20 127.6 10.0 130 19-167 15-148 (149)
133 2o6r_A Variable lymphocyte rec 99.6 3.3E-15 1.1E-19 128.5 13.3 131 335-469 9-141 (177)
134 4fdw_A Leucine rich hypothetic 99.6 9.5E-14 3.2E-18 134.9 23.0 249 128-418 129-383 (401)
135 4b8c_D Glucose-repressible alc 99.6 5.9E-16 2E-20 162.3 7.7 219 20-273 172-403 (727)
136 4b8c_D Glucose-repressible alc 99.6 5.8E-16 2E-20 162.3 4.9 180 253-442 216-404 (727)
137 1a9n_A U2A', U2A'; complex (nu 99.6 6.8E-15 2.3E-19 126.3 9.5 133 306-442 16-153 (176)
138 4gt6_A Cell surface protein; l 99.5 1.2E-12 4E-17 127.7 23.4 132 279-417 259-390 (394)
139 1a9n_A U2A', U2A'; complex (nu 99.5 2.1E-14 7.2E-19 123.2 9.6 130 18-171 16-152 (176)
140 3g39_A Variable lymphocyte rec 99.5 1.5E-13 5.1E-18 117.0 11.4 109 335-446 11-119 (170)
141 3g39_A Variable lymphocyte rec 99.5 1.7E-13 5.7E-18 116.7 10.8 102 1-106 14-115 (170)
142 1ds9_A Outer arm dynein; leuci 99.5 4.8E-16 1.6E-20 136.3 -6.4 153 259-442 16-185 (198)
143 4gt6_A Cell surface protein; l 99.5 2.1E-11 7.3E-16 118.8 25.6 149 286-442 243-391 (394)
144 2r9u_A Variable lymphocyte rec 99.5 3.7E-13 1.3E-17 114.9 11.4 105 336-443 15-119 (174)
145 2r9u_A Variable lymphocyte rec 99.5 3.2E-13 1.1E-17 115.2 10.8 102 1-106 17-118 (174)
146 1ds9_A Outer arm dynein; leuci 99.4 2.2E-15 7.4E-20 132.2 -4.3 155 233-418 14-185 (198)
147 2ifg_A High affinity nerve gro 99.3 2.6E-12 9.1E-17 123.1 10.0 132 336-470 11-146 (347)
148 3un9_A NLR family member X1; l 99.3 4.9E-14 1.7E-18 135.6 -2.7 93 333-425 155-259 (372)
149 3un9_A NLR family member X1; l 99.3 1.5E-13 5.1E-18 132.2 -1.1 134 309-442 101-252 (372)
150 2ifg_A High affinity nerve gro 99.3 7.1E-12 2.4E-16 120.1 10.2 105 312-419 11-117 (347)
151 4h09_A Hypothetical leucine ri 99.3 7.5E-10 2.6E-14 107.3 23.1 145 281-430 213-357 (379)
152 4h09_A Hypothetical leucine ri 99.2 2.3E-09 8E-14 103.8 25.5 147 255-406 211-357 (379)
153 2ra8_A Uncharacterized protein 98.9 5.2E-10 1.8E-14 106.6 5.4 159 277-440 164-341 (362)
154 2ra8_A Uncharacterized protein 98.9 3.4E-09 1.2E-13 100.9 7.6 156 257-416 168-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 1.4E-08 4.7E-13 87.2 4.5 114 329-442 32-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 3.2E-08 1.1E-12 84.9 3.1 88 331-418 63-164 (185)
157 3e4g_A ATP synthase subunit S, 98.4 6.5E-08 2.2E-12 80.8 2.2 83 358-440 62-150 (176)
158 3rw6_A Nuclear RNA export fact 98.3 1.5E-07 5.1E-12 84.9 2.5 62 356-419 169-234 (267)
159 3rw6_A Nuclear RNA export fact 98.3 2.1E-07 7.2E-12 83.9 2.5 80 18-99 167-257 (267)
160 3e4g_A ATP synthase subunit S, 98.2 4.5E-07 1.6E-11 75.7 3.4 84 333-416 61-150 (176)
161 3rfe_A Platelet glycoprotein I 97.8 2.5E-05 8.4E-10 62.2 6.2 35 406-440 32-66 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 3.2E-05 1.1E-09 65.8 5.2 111 331-441 39-169 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00033 1.1E-08 59.6 4.8 92 350-441 34-138 (197)
164 3rfe_A Platelet glycoprotein I 96.7 0.0021 7.2E-08 50.9 5.3 57 24-82 11-68 (130)
165 2lz0_A Uncharacterized protein 84.3 2.5 8.4E-05 31.1 6.1 47 6-54 6-52 (100)
166 2lz0_A Uncharacterized protein 78.0 8 0.00027 28.3 6.9 48 31-79 6-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.1e-59 Score=495.08 Aligned_cols=483 Identities=33% Similarity=0.533 Sum_probs=383.9
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|++++|.+++.+|. ..+++|++|++++|.+.+.+|. +..+++|++|++++|++++..|..++++++|++|++++|+
T Consensus 183 L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 183 LAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258 (768)
T ss_dssp EECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSC
T ss_pred EECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCc
Confidence 46677777766653 5677777777777777766665 7777777777777777777777777777777777777777
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC-------CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccCh
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP-------RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPS 153 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~ 153 (508)
+.+..|.. .+++|++|++++|.+.+. .+++|++|++++|.+++..|..+.++++|++|++++|.+.+.+|.
T Consensus 259 l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~ 336 (768)
T 3rgz_A 259 FVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336 (768)
T ss_dssp CEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH
T ss_pred ccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH
Confidence 76655543 677777777777766522 136777777777777777777777777777777777777666665
Q ss_pred h-hcCCCCCCEEeCCCCcCcC-CCCCCcc-------------------cccccC--CCCCCEEEccCccCccCCChhhhh
Q 045861 154 T-IANLRNLQWLDLSFNYLTS-STSELSF-------------------LSSLRN--CRNLKVIDLTGNQLHGILPSSMGN 210 (508)
Q Consensus 154 ~-~~~l~~L~~L~l~~n~~~~-~~~~~~~-------------------~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~ 210 (508)
. +..+++|++|++++|.+.+ ++..+.. ...+.. +++|+.|++++|.+++..|..+..
T Consensus 337 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~ 416 (768)
T 3rgz_A 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416 (768)
T ss_dssp HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG
T ss_pred HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc
Confidence 4 6677777777777776552 2211100 011222 567888888888888888888877
Q ss_pred cccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEE
Q 045861 211 LSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVEL 290 (508)
Q Consensus 211 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 290 (508)
.+ +|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 417 l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 495 (768)
T 3rgz_A 417 CS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495 (768)
T ss_dssp CT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred CC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEE
Confidence 76 89999999999888888889999999999999999988888889999999999999999988888889999999999
Q ss_pred EeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccc-----------------
Q 045861 291 QFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDI----------------- 353 (508)
Q Consensus 291 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~----------------- 353 (508)
++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|..+
T Consensus 496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~ 575 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence 999999988889999999999999999999998888889999999999999998876666433
Q ss_pred -----------------------------------------------------cCCCCCcEEECCCCcCCCccchhhhcC
Q 045861 354 -----------------------------------------------------GNLKVVVGIDLSRNNLSDSIPTVIGGL 380 (508)
Q Consensus 354 -----------------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l 380 (508)
..++.|+.|++++|++++.+|..++.+
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 655 (768)
T 3rgz_A 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655 (768)
T ss_dssp EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc
Confidence 335678999999999999999999999
Q ss_pred CCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccccCCCCccccc
Q 045861 381 SNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFM 460 (508)
Q Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~l~l~ 460 (508)
++|+.|+|++|.+++.+|..++.+++|++|||++|++++.+|..+..+++|++|++++|+++|.+|...++.++...++.
T Consensus 656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~ 735 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGC
T ss_pred ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 045861 461 GNSFLCGSPNLQVPPRKDIKTSPHRKSRKNTRS 493 (508)
Q Consensus 461 ~n~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (508)
|||.+|+.|. ++|.......+.++.++++.
T Consensus 736 gN~~Lcg~~l---~~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 736 NNPGLCGYPL---PRCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp SCTEEESTTS---CCCCSCC-------------
T ss_pred CCchhcCCCC---cCCCCCccCCCCCCCCcccc
Confidence 9999999874 37988888888877776554
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.5e-55 Score=464.13 Aligned_cols=457 Identities=32% Similarity=0.528 Sum_probs=381.0
Q ss_pred CeecCCCCCCCCchhh--hhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccC
Q 045861 1 MDFANNTLTGSLPDDM--CQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGN 78 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 78 (508)
|++++|.+++..|..+ +.++++|++|++++|.+.+..+ +..+++|++|++++|++++..|. ++++++|++|++++
T Consensus 156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~ 232 (768)
T 3rgz_A 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISG 232 (768)
T ss_dssp EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCS
T ss_pred EECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcC
Confidence 3556666665555442 4667777777777777765443 36789999999999999877776 99999999999999
Q ss_pred CccccCCchhccCCCCCCEeeCccccCCCC----CCCCCCEEEccCCcccccCCccccCC-CCCcEEEccCcccccccCh
Q 045861 79 NNLIGEIPHEIGNLHNLEYLVLENNNFDGP----RHSNLERLYLERNNFSGTIPSFIFNA-SKLSILGIRTNSFSGTIPS 153 (508)
Q Consensus 79 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~i~~~~~~ 153 (508)
|++.+..|..+.++++|++|++++|.+.+. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|.
T Consensus 233 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~ 312 (768)
T 3rgz_A 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312 (768)
T ss_dssp SCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG
T ss_pred CcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch
Confidence 999988899999999999999999987643 67899999999999998999988875 9999999999999999999
Q ss_pred hhcCCCCCCEEeCCCCcCcC-CCCCCcccccccCCCCCCEEEccCccCccCCChhhhhccc-------------------
Q 045861 154 TIANLRNLQWLDLSFNYLTS-STSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLST------------------- 213 (508)
Q Consensus 154 ~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~------------------- 213 (508)
.|+.+++|++|++++|.+.+ ++. ..+..+++|++|++++|.+++..|..+....+
T Consensus 313 ~~~~l~~L~~L~L~~n~l~~~ip~-----~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~ 387 (768)
T 3rgz_A 313 FFGSCSLLESLALSSNNFSGELPM-----DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387 (768)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCH-----HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT
T ss_pred HHhcCCCccEEECCCCcccCcCCH-----HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh
Confidence 99999999999999998873 321 23667788888888888777666666655432
Q ss_pred -------ccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCC
Q 045861 214 -------SLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGR 286 (508)
Q Consensus 214 -------~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 286 (508)
+|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..++.+++|++|++++|.+.+..|..+..+++
T Consensus 388 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 467 (768)
T 3rgz_A 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467 (768)
T ss_dssp TTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred hhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence 4566666666666667777788888888888888888778888888888888888888888888888888888
Q ss_pred CcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCC
Q 045861 287 LVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSR 366 (508)
Q Consensus 287 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 366 (508)
|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+.+|..+..+++|+.|++++
T Consensus 468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence 88888888888888888888889999999999998888888888889999999999999888888899999999999999
Q ss_pred CcCCCccchhh---------------------------------------------------------------------
Q 045861 367 NNLSDSIPTVI--------------------------------------------------------------------- 377 (508)
Q Consensus 367 n~l~~~~~~~~--------------------------------------------------------------------- 377 (508)
|++.+.+|..+
T Consensus 548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence 98876666443
Q ss_pred -hcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc-cccCCCC
Q 045861 378 -GGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFANFS 455 (508)
Q Consensus 378 -~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~ 455 (508)
..+++|++|++++|++++.+|..++.+++|+.|+|++|++++.+|..+.++++|+.|++++|++++.+|.. ..+.+|+
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 23467899999999999999999999999999999999999999999999999999999999999999986 4678899
Q ss_pred cccccCCCCC
Q 045861 456 DNSFMGNSFL 465 (508)
Q Consensus 456 ~l~l~~n~~~ 465 (508)
.+++++|+..
T Consensus 708 ~L~ls~N~l~ 717 (768)
T 3rgz_A 708 EIDLSNNNLS 717 (768)
T ss_dssp EEECCSSEEE
T ss_pred EEECcCCccc
Confidence 9999999654
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-54 Score=451.82 Aligned_cols=462 Identities=19% Similarity=0.224 Sum_probs=354.1
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|++++|.++ .++...|.++++|++|++++|.+.+..|..|.++++|++|++++|++++..|..|+++++|++|++++|+
T Consensus 38 L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 116 (606)
T 3t6q_A 38 LEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116 (606)
T ss_dssp EECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC
T ss_pred EEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccC
Confidence 456666666 3333333666666666666666665556666666666666666666666666666666666666666666
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC------CCCCCCEEEccCCcccccCCccccCCCCCc--EEEccCcccccccC
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP------RHSNLERLYLERNNFSGTIPSFIFNASKLS--ILGIRTNSFSGTIP 152 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~i~~~~~ 152 (508)
+.+..+..+.++++|++|++++|.+..+ .+++|++|++++|.+++..+..+..+++|+ .|++++|.+.+..+
T Consensus 117 i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~ 196 (606)
T 3t6q_A 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196 (606)
T ss_dssp CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECT
T ss_pred cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccCh
Confidence 6654455666666666666666666543 345666666666666655556666666666 66666666665554
Q ss_pred hhhcCC---------------------------------------------------CCCCEEeCCCCcCcCCCCCCccc
Q 045861 153 STIANL---------------------------------------------------RNLQWLDLSFNYLTSSTSELSFL 181 (508)
Q Consensus 153 ~~~~~l---------------------------------------------------~~L~~L~l~~n~~~~~~~~~~~~ 181 (508)
..+... .+|+.+++++|.+..++.
T Consensus 197 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~----- 271 (606)
T 3t6q_A 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS----- 271 (606)
T ss_dssp TTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT-----
T ss_pred hHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH-----
Confidence 443221 034444444444443322
Q ss_pred ccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccC-ccccCC
Q 045861 182 SSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIP-ISLGKL 260 (508)
Q Consensus 182 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~~ 260 (508)
..|..+++|+.|++++|.++ .+|..+...+ +|++|++++|.+.+..|..+..+++|++|++++|.+.+..+ ..+..+
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCS-CCCSSCCSCT-TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred HHhccccCCCEEeccCCccC-CCChhhcccc-cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 33677888999999998887 5566666665 89999999998887778888889999999999998875544 448889
Q ss_pred CCCCcEEccCCcCcccc--chhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCc-cccCccCCcE
Q 045861 261 QKLQGLYLYKNKLEGSI--PDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPS-TFLSLRDILV 337 (508)
Q Consensus 261 ~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~ 337 (508)
++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+. .+..+++|++
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence 99999999999988654 66788999999999999999888888999999999999999999877554 4889999999
Q ss_pred EEccCCccccccCccccCCCCCcEEECCCCcCCCc---cchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCC
Q 045861 338 FNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDS---IPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSN 414 (508)
Q Consensus 338 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (508)
|++++|.+.+..+..+..+++|++|++++|++.+. .+..+..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCC
Confidence 99999999988888899999999999999999863 235688999999999999999988899999999999999999
Q ss_pred CcccccCcccccCCCCCCEEeCCCCcceecCCCc-cccCCCCcccccCCCCCCCCCCC
Q 045861 415 NSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFANFSDNSFMGNSFLCGSPNL 471 (508)
Q Consensus 415 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~l~l~~n~~~c~~~~~ 471 (508)
|++++..|+.+..++.| +|++++|++++..|.. ..+++++.+++++|||.|+|+..
T Consensus 510 N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp SCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred CccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence 99999999999999999 9999999999666654 45788999999999999999843
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.5e-52 Score=436.23 Aligned_cols=231 Identities=23% Similarity=0.279 Sum_probs=166.5
Q ss_pred cEEEcccCccccccCccccCCCCCCcEEccCCcCccccc-hhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCC
Q 045861 240 ITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIP-DSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHS 318 (508)
Q Consensus 240 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~ 318 (508)
+.|++++|.+.+..+..+..+++|++|++++|.+.+.++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~ 463 (680)
T 1ziw_A 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcc
Confidence 333333344444444455555666666666666554333 4555666666666666666555555566666666666666
Q ss_pred Cccc--ccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccc--------hhhhcCCCCCEEEC
Q 045861 319 NVLT--YVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIP--------TVIGGLSNLAFFSL 388 (508)
Q Consensus 319 n~~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~L 388 (508)
|.+. +..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+ ..+.++++|++|++
T Consensus 464 n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L 543 (680)
T 1ziw_A 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543 (680)
T ss_dssp SCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEEC
T ss_pred ccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEEC
Confidence 6654 3455667788888888888888887777778888888888888888875422 23677889999999
Q ss_pred cCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCcc--ccCCCCcccccCCCCCC
Q 045861 389 AYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGE--SFANFSDNSFMGNSFLC 466 (508)
Q Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~--~~~~l~~l~l~~n~~~c 466 (508)
++|.++...+..|.++++|+.|++++|++++..+..|.++++|+.|++++|++++..|... .+++++.+++++|||.|
T Consensus 544 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred CCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCccc
Confidence 9998885545678899999999999999998777888899999999999999985444432 57899999999999999
Q ss_pred CCCC
Q 045861 467 GSPN 470 (508)
Q Consensus 467 ~~~~ 470 (508)
+|+.
T Consensus 624 ~c~~ 627 (680)
T 1ziw_A 624 TCES 627 (680)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 9986
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.4e-52 Score=434.31 Aligned_cols=457 Identities=21% Similarity=0.253 Sum_probs=349.0
Q ss_pred eecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCcc
Q 045861 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNL 81 (508)
Q Consensus 2 ~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (508)
++++++++ .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|++++..|.+|+++++|++|++++|++
T Consensus 17 ~c~~~~l~-~ip~~~---~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 17 QCMDQKLS-KVPDDI---PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp ECTTSCCS-SCCTTS---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EccCCCcc-cCCCCC---CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence 55666666 666655 36677777777777766666677777777777777777766666777777777777777777
Q ss_pred ccCCchhccCCCCCCEeeCccccCCCC------CCCCCCEEEccCCcccc-cCCccccCCCCCcEEEccCcccccccChh
Q 045861 82 IGEIPHEIGNLHNLEYLVLENNNFDGP------RHSNLERLYLERNNFSG-TIPSFIFNASKLSILGIRTNSFSGTIPST 154 (508)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~L~~n~~~~~------~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~ 154 (508)
.+..|..|+++++|++|++++|.+... .+++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~ 172 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh
Confidence 666666777777777777777766543 45677777777777664 35666777777777777777776655555
Q ss_pred hcCCCCCC----EEeCCCCcCcCCCCCC----------------------------------------------------
Q 045861 155 IANLRNLQ----WLDLSFNYLTSSTSEL---------------------------------------------------- 178 (508)
Q Consensus 155 ~~~l~~L~----~L~l~~n~~~~~~~~~---------------------------------------------------- 178 (508)
|+.+.+|+ ++++++|.+..++...
T Consensus 173 ~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~ 252 (606)
T 3vq2_A 173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252 (606)
T ss_dssp THHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCG
T ss_pred hhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccCh
Confidence 54444332 4555555544332211
Q ss_pred -----------------------cccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhc
Q 045861 179 -----------------------SFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGN 235 (508)
Q Consensus 179 -----------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 235 (508)
.....+..+++|+.++++++.+.. .+ .+.... +|++|++++|.+ +.+|. + .
T Consensus 253 ~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~-~L~~L~l~~n~l-~~lp~-~-~ 326 (606)
T 3vq2_A 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHF-KWQSLSIIRCQL-KQFPT-L-D 326 (606)
T ss_dssp GGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTC-CCSEEEEESCCC-SSCCC-C-C
T ss_pred HHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh-hh-hccccc-cCCEEEcccccC-ccccc-C-C
Confidence 000113445666667776666653 23 444443 788888888887 56663 4 8
Q ss_pred CCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccc--cchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCE
Q 045861 236 LINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGS--IPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRN 313 (508)
Q Consensus 236 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 313 (508)
+++|++|++++|...+.. .+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+ .+..+..+++|+.
T Consensus 327 l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~ 403 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQH 403 (606)
T ss_dssp CSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCE
T ss_pred CCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCe
Confidence 888888888888554333 567889999999999998755 37889999999999999999875 5578899999999
Q ss_pred EEcCCCcccccCC-ccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCC-ccchhhhcCCCCCEEECcCC
Q 045861 314 LLLHSNVLTYVIP-STFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSD-SIPTVIGGLSNLAFFSLAYN 391 (508)
Q Consensus 314 L~l~~n~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n 391 (508)
|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|
T Consensus 404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC
Confidence 9999999998877 688999999999999999998899999999999999999999997 47888999999999999999
Q ss_pred cccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc-cccC-CCCcccccCCCCCCCCC
Q 045861 392 KLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFA-NFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 392 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~-~l~~l~l~~n~~~c~~~ 469 (508)
.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++ .+|.. ..++ +++.+++++|||.|+|+
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 999888999999999999999999999988999999999999999999998 67765 3444 59999999999999999
Q ss_pred CCC
Q 045861 470 NLQ 472 (508)
Q Consensus 470 ~~~ 472 (508)
..+
T Consensus 563 ~~~ 565 (606)
T 3vq2_A 563 HQK 565 (606)
T ss_dssp THH
T ss_pred cHH
Confidence 643
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.5e-50 Score=419.08 Aligned_cols=458 Identities=20% Similarity=0.208 Sum_probs=387.0
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
+++++.+++ ++|..+ .+++++|++++|.+++..+..|.++++|++|++++|++++..|.+|+++++|++|++++|+
T Consensus 17 ~~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 17 YNCENLGLN-EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EECTTSCCS-SCCTTS---CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EECCCCCcc-cCcCCC---CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 356778888 889776 4589999999999998888899999999999999999998989999999999999999999
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC------CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChh
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP------RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPST 154 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~ 154 (508)
+.+..|..|+++++|++|++++|.+... .+++|++|++++|.+.+.....+..+++|++|++++|.+++..+..
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence 9988899999999999999999998874 6789999999999998655455566999999999999999888888
Q ss_pred hcCCCCCC--EEeCCCCcCcCCCCCCccc--------------------------------------------ccccCC-
Q 045861 155 IANLRNLQ--WLDLSFNYLTSSTSELSFL--------------------------------------------SSLRNC- 187 (508)
Q Consensus 155 ~~~l~~L~--~L~l~~n~~~~~~~~~~~~--------------------------------------------~~l~~~- 187 (508)
|+.+++|+ +|++++|.+...+...-.. ..+..+
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~ 252 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred hhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhh
Confidence 99999999 8999999887754321100 001111
Q ss_pred -CCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcE
Q 045861 188 -RNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGL 266 (508)
Q Consensus 188 -~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 266 (508)
.+|+.++++++.+++..+..+..++ +|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 253 ~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 253 EMSVESINLQKHYFFNISSNTFHCFS-GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330 (606)
T ss_dssp GSEEEEEECTTCCCSSCCTTTTTTCT-TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred cCceeEEEeecCccCccCHHHhcccc-CCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence 1578888888888877777777776 9999999999877 677778889999999999999987778888899999999
Q ss_pred EccCCcCccccch-hhhCCCCCcEEEeeCceeeeeC--CcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCC
Q 045861 267 YLYKNKLEGSIPD-SLCNLGRLVELQFYDNKLFGSI--PACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSN 343 (508)
Q Consensus 267 ~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n 343 (508)
++++|.+.+..+. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 9999988755544 4888999999999999887665 677888999999999999998888888999999999999999
Q ss_pred ccccccCc-cccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCccccc---CcccccCCCCCCEEECCCCcccc
Q 045861 344 SLNGSLPL-DIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGS---IPESLGDLRSLEFLDLSNNSFSG 419 (508)
Q Consensus 344 ~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~~~~ 419 (508)
++.+..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 99866554 478899999999999999888888889999999999999998752 23568888999999999999998
Q ss_pred cCcccccCCCCCCEEeCCCCcceecCCCc-cccCCCCcccccCCCCC
Q 045861 420 FIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFANFSDNSFMGNSFL 465 (508)
Q Consensus 420 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~l~l~~n~~~ 465 (508)
..|..|..+++|++|++++|++++..|.. ..+..+ .+++++|...
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence 88889999999999999999998776654 346667 7888888544
No 7
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-49 Score=411.52 Aligned_cols=452 Identities=20% Similarity=0.267 Sum_probs=370.5
Q ss_pred eecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCcc
Q 045861 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNL 81 (508)
Q Consensus 2 ~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (508)
+.++.+++ ++|..+ .+++++|++++|.+++..+..|..+++|++|++++|++++..+..|+++++|++|++++|++
T Consensus 13 ~c~~~~l~-~ip~~l---~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 13 QCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp ECCSSCCS-SCCSSS---CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EeCCCCcc-ccCCCc---cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 45667777 788655 45799999999999877777899999999999999999888888899999999999999998
Q ss_pred ccCCchhccCCCCCCEeeCccccCCCC------CCCCCCEEEccCCcccc-cCCccccCCCCCcEEEccCcccccccChh
Q 045861 82 IGEIPHEIGNLHNLEYLVLENNNFDGP------RHSNLERLYLERNNFSG-TIPSFIFNASKLSILGIRTNSFSGTIPST 154 (508)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~L~~n~~~~~------~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~ 154 (508)
.+..+..|.++++|++|++++|.+... .+++|++|++++|.+.+ .+|..+.++++|++|++++|++++..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~ 168 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH
Confidence 877778899999999999999987754 56789999999998876 46888999999999999999998777777
Q ss_pred hcCCCCC----CEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCc--------------------------------
Q 045861 155 IANLRNL----QWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGN-------------------------------- 198 (508)
Q Consensus 155 ~~~l~~L----~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-------------------------------- 198 (508)
++.+++| +.+++++|.+..++.. .+... +|+.++++++
T Consensus 169 ~~~l~~L~~~~~~L~l~~n~l~~~~~~-----~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 242 (570)
T 2z63_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPG-----AFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242 (570)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTT-----TTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS
T ss_pred ccchhccchhhhhcccCCCCceecCHH-----HhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchh
Confidence 8777777 7899999887765432 23222 4566655554
Q ss_pred --------------------------cCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccc
Q 045861 199 --------------------------QLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGS 252 (508)
Q Consensus 199 --------------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 252 (508)
.+.+..+..+...+ +++.|+++++.+. .+|..+..+ +|++|++++|.+. .
T Consensus 243 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~ 318 (570)
T 2z63_A 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT-NVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-Q 318 (570)
T ss_dssp CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGT-TCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-S
T ss_pred hhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcC-cccEEEecCccch-hhhhhhccC-CccEEeeccCccc-c
Confidence 22333444454444 7888888887766 466666667 8888888888777 3
Q ss_pred cCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeC--CcccCCCCCCCEEEcCCCcccccCCcccc
Q 045861 253 IPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSI--PACIGKLSPLRNLLLHSNVLTYVIPSTFL 330 (508)
Q Consensus 253 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 330 (508)
+|. ..+++|++|++++|.+....+. ..+++|++|++++|.+.+.. +..+..+++|++|++++|.+....+. +.
T Consensus 319 l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~ 393 (570)
T 2z63_A 319 FPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FL 393 (570)
T ss_dssp CCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EE
T ss_pred cCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-cc
Confidence 443 4677888888888887655443 67899999999999887553 66788899999999999999877665 88
Q ss_pred CccCCcEEEccCCccccccC-ccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCccc-ccCcccccCCCCCC
Q 045861 331 SLRDILVFNFSSNSLNGSLP-LDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQ-GSIPESLGDLRSLE 408 (508)
Q Consensus 331 ~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 408 (508)
.+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.++ +.+|..+..+++|+
T Consensus 394 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473 (570)
T ss_dssp TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence 99999999999999987655 56889999999999999999888899999999999999999997 57889999999999
Q ss_pred EEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc-cccCCCCcccccCCCCCCCCCCCC
Q 045861 409 FLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFANFSDNSFMGNSFLCGSPNLQ 472 (508)
Q Consensus 409 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~l~l~~n~~~c~~~~~~ 472 (508)
+|++++|++++..|..+..+++|++|++++|++++..|.. ..+++|+.+++++||+.|+||..+
T Consensus 474 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred EEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 9999999999988999999999999999999999665543 467889999999999999999753
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-48 Score=411.87 Aligned_cols=455 Identities=22% Similarity=0.275 Sum_probs=281.3
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|++++|+++ .++...|.++++|++|++++|.+++..|..|..+++|++|++++|+++...+..|+++++|++|++++|+
T Consensus 30 L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 108 (680)
T 1ziw_A 30 LNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108 (680)
T ss_dssp EECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred EECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc
Confidence 356666666 3444444666666666666666665555556666666666666666665444456666666666666666
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC------CCCCCCEEEccCCcccccCCcccc--CCCCCcEEEccCcccccccC
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP------RHSNLERLYLERNNFSGTIPSFIF--NASKLSILGIRTNSFSGTIP 152 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~i~~~~~ 152 (508)
+.+..+..|+++++|++|++++|.+... .+++|++|++++|.+++..+..+. .+++|++|++++|.+++..+
T Consensus 109 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence 6544445566666666666666655443 344555555555555433333222 23445555555544443333
Q ss_pred hh---------------------------------------------------hcCCCC--CCEEeCCCCcCcCCCCCCc
Q 045861 153 ST---------------------------------------------------IANLRN--LQWLDLSFNYLTSSTSELS 179 (508)
Q Consensus 153 ~~---------------------------------------------------~~~l~~--L~~L~l~~n~~~~~~~~~~ 179 (508)
.. |..++. |++|++++|.+.....
T Consensus 189 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~--- 265 (680)
T 1ziw_A 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN--- 265 (680)
T ss_dssp TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT---
T ss_pred hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc---
Confidence 33 332222 4444444444433221
Q ss_pred ccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcc-----cCCh----hhhcCCCCcEEEcccCccc
Q 045861 180 FLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSG-----RIPE----EIGNLINLITMSLGINKLT 250 (508)
Q Consensus 180 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~----~l~~l~~L~~L~l~~~~~~ 250 (508)
..+..+++|+.|++++|.+.+..+..+.... +|++|+++++...+ .+|. .+..+++|++|++++|.+.
T Consensus 266 --~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 266 --DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF-NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp --TTTTTCTTCCEEECCSCCBSEECTTTTTTCT-TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred --ccccCcccccEeeCCCCccCccChhhhcCCC-CccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 2344555555555555555544444444333 44444444332211 1111 3444555666666666655
Q ss_pred cccCccccCCCCCCcEEccC----------------------------CcCccccchhhhCCCCCcEEEeeCceeeeeCC
Q 045861 251 GSIPISLGKLQKLQGLYLYK----------------------------NKLEGSIPDSLCNLGRLVELQFYDNKLFGSIP 302 (508)
Q Consensus 251 ~~~~~~l~~~~~L~~L~l~~----------------------------n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 302 (508)
+..+..+.++++|++|++++ |.+.+..+..|..+++|++|++++|.+.+.++
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 422 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence 55555555555555555444 33443445556666677777777776655444
Q ss_pred -cccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccc--cccCccccCCCCCcEEECCCCcCCCccchhhhc
Q 045861 303 -ACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLN--GSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGG 379 (508)
Q Consensus 303 -~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 379 (508)
..+..+++|++|++++|.+....+..|..+++|++|++++|.+. +..|..+..+++|+.|++++|++++..+..|.+
T Consensus 423 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 502 (680)
T 1ziw_A 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502 (680)
T ss_dssp SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc
Confidence 45666777777777777776666667777777777777777765 356777888899999999999999777778899
Q ss_pred CCCCCEEECcCCcccccCc--------ccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc--c
Q 045861 380 LSNLAFFSLAYNKLQGSIP--------ESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG--E 449 (508)
Q Consensus 380 l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~--~ 449 (508)
+++|++|++++|.+++..+ ..+.++++|++|++++|+++...++.|.++++|+.|++++|+++ .+|.. .
T Consensus 503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~ 581 (680)
T 1ziw_A 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFN 581 (680)
T ss_dssp CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCHhHhC
Confidence 9999999999999885422 23778899999999999999766678999999999999999998 55554 3
Q ss_pred ccCCCCcccccCCC
Q 045861 450 SFANFSDNSFMGNS 463 (508)
Q Consensus 450 ~~~~l~~l~l~~n~ 463 (508)
.+.+|+.+++++|.
T Consensus 582 ~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 582 NQVSLKSLNLQKNL 595 (680)
T ss_dssp TCTTCCEEECTTSC
T ss_pred CCCCCCEEECCCCc
Confidence 57889999999984
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-50 Score=430.55 Aligned_cols=460 Identities=20% Similarity=0.199 Sum_probs=284.0
Q ss_pred eecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCC-CCCCcccCCCCCCCeEEccCCc
Q 045861 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLT-GLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 2 ~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|+++++++ .+|. + .+++++|++++|.+++..+..|..+++|++|++++|... .+.|.+|+++++|++|+|++|.
T Consensus 10 dcs~~~L~-~vP~-l---p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 10 FYRFCNLT-QVPQ-V---LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EESCCCSS-CCCS-S---CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred EccCCCCC-CCCC-C---CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 45666666 5664 2 456777777777766666666677777777777766333 2335666777777777777776
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC--------CCCCCCEEEccCCcccccCC-ccccCCCCCcEEEccCccccccc
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP--------RHSNLERLYLERNNFSGTIP-SFIFNASKLSILGIRTNSFSGTI 151 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~--------~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~ 151 (508)
+.+..|..|.++++|++|++++|.+.+. .+++|++|++++|.+.+..+ ..+.++++|++|++++|.+++..
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 6666666677777777777777666531 45567777777776664433 45666777777777777666655
Q ss_pred ChhhcCC--CCCCEEeCCCCcCcCCCC-CCcccc-cccCCCCCCEEEccCccCccCCChhhhhc----------------
Q 045861 152 PSTIANL--RNLQWLDLSFNYLTSSTS-ELSFLS-SLRNCRNLKVIDLTGNQLHGILPSSMGNL---------------- 211 (508)
Q Consensus 152 ~~~~~~l--~~L~~L~l~~n~~~~~~~-~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---------------- 211 (508)
+..+..+ ++|+.|++++|.+..... .+.... .+.. ..|+.|++++|.+.+..+..+...
T Consensus 165 ~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN-MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT-CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred HHHcccccCCccceEECCCCccccccccchhhcCCcccc-CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 6555544 556666666655544111 000000 0111 125555555554433322222110
Q ss_pred ---------------------ccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccC
Q 045861 212 ---------------------STSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYK 270 (508)
Q Consensus 212 ---------------------~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 270 (508)
.++++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.++++|++|++++
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence 12455555555555555555555555555555555555554455555555555555555
Q ss_pred CcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCC------------------------
Q 045861 271 NKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIP------------------------ 326 (508)
Q Consensus 271 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~------------------------ 326 (508)
|.+.+..+..|..+++|++|++++|.+....+..+..+++|+.|++++|.++....
T Consensus 324 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l 403 (844)
T 3j0a_A 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTA 403 (844)
T ss_dssp CCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTC
T ss_pred CCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccccccc
Confidence 55554445555555555555555555544444445555555555555554442210
Q ss_pred ----------------ccccCccCCcEEEccCCccccccCc-cccCCCCCcEEECCCCcCC-----CccchhhhcCCCCC
Q 045861 327 ----------------STFLSLRDILVFNFSSNSLNGSLPL-DIGNLKVVVGIDLSRNNLS-----DSIPTVIGGLSNLA 384 (508)
Q Consensus 327 ----------------~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~ 384 (508)
..+..+++|++|++++|++++..+. .+..+++|+.|++++|.+. +..+..|.++++|+
T Consensus 404 ~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~ 483 (844)
T 3j0a_A 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483 (844)
T ss_dssp CEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEE
T ss_pred ceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCccccc
Confidence 0123566777777777777643322 3445677777778777775 23345577888999
Q ss_pred EEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccccCCCCcccccCCCC
Q 045861 385 FFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSF 464 (508)
Q Consensus 385 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n~~ 464 (508)
.|+|++|.+++..+..|.++++|+.|+|++|++++..+..+. ++|+.|++++|++++..|.. +.++..+++++|||
T Consensus 484 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKF 559 (844)
T ss_dssp CCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECC
T ss_pred EEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCc
Confidence 999999999888888888899999999999999977776665 78999999999998766653 56899999999999
Q ss_pred CCCCCCC
Q 045861 465 LCGSPNL 471 (508)
Q Consensus 465 ~c~~~~~ 471 (508)
.|+|+..
T Consensus 560 ~C~c~~~ 566 (844)
T 3j0a_A 560 ICECELS 566 (844)
T ss_dssp CCSSSCC
T ss_pred ccccccH
Confidence 9999864
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.1e-48 Score=404.56 Aligned_cols=431 Identities=22% Similarity=0.217 Sum_probs=341.3
Q ss_pred CCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCc
Q 045861 22 RLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLE 101 (508)
Q Consensus 22 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 101 (508)
.-++++.+++.++ .+|..+. +++++|++++|++++..+..|+++++|++|++++|++.+..|.+|.++++|++|+++
T Consensus 12 ~~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 12 PNITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 3468999999998 6676553 899999999999998888899999999999999999998888999999999999999
Q ss_pred cccCCCC------CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCccccc-ccChhhcCCCCCCEEeCCCCcCcCC
Q 045861 102 NNNFDGP------RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSG-TIPSTIANLRNLQWLDLSFNYLTSS 174 (508)
Q Consensus 102 ~n~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~~~~l~~L~~L~l~~n~~~~~ 174 (508)
+|.+... .+++|++|++++|.+.+..+..+.++++|++|++++|.+.+ .+|..|+.+++|++|++++|.+...
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 9998766 57899999999999997777889999999999999999986 5699999999999999999998875
Q ss_pred CCCCcccccccCCCC-CCEEEccCccCccCCChhhhhc------------------------------------------
Q 045861 175 TSELSFLSSLRNCRN-LKVIDLTGNQLHGILPSSMGNL------------------------------------------ 211 (508)
Q Consensus 175 ~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~------------------------------------------ 211 (508)
+... +..+..++. +..+++++|.+++..+..+...
T Consensus 169 ~~~~--~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 169 TVND--LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp CTTT--THHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred Chhh--hhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 4321 011222221 2345555555443333222211
Q ss_pred -------------------------------------ccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccC
Q 045861 212 -------------------------------------STSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIP 254 (508)
Q Consensus 212 -------------------------------------~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 254 (508)
.++++.|+++++.+. .+| .+..+++|++|++++|.+ +.+|
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp 323 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP 323 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC
T ss_pred ccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc
Confidence 114444444444442 223 455556666666666666 3455
Q ss_pred ccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeee--CCcccCCCCCCCEEEcCCCcccccCCccccCc
Q 045861 255 ISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGS--IPACIGKLSPLRNLLLHSNVLTYVIPSTFLSL 332 (508)
Q Consensus 255 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 332 (508)
.+ .+++|++|++++|...+.. .+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.... ..+..+
T Consensus 324 -~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l 398 (606)
T 3vq2_A 324 -TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGL 398 (606)
T ss_dssp -CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTC
T ss_pred -cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCC
Confidence 33 6667777777776443322 456778888888888887655 3677888899999999999888654 778889
Q ss_pred cCCcEEEccCCccccccC-ccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccc-cCcccccCCCCCCEE
Q 045861 333 RDILVFNFSSNSLNGSLP-LDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQG-SIPESLGDLRSLEFL 410 (508)
Q Consensus 333 ~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L 410 (508)
++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ ..|..+..+++|++|
T Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 478 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478 (606)
T ss_dssp TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence 999999999999987776 678899999999999999998888999999999999999999987 478889999999999
Q ss_pred ECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc-cccCCCCcccccCCCCC
Q 045861 411 DLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFANFSDNSFMGNSFL 465 (508)
Q Consensus 411 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~l~l~~n~~~ 465 (508)
++++|++++..|..+..+++|++|++++|++++..|.. ..+++|+.+++++|...
T Consensus 479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred ECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 99999999998999999999999999999999776765 45788999999999654
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.6e-48 Score=399.34 Aligned_cols=457 Identities=20% Similarity=0.229 Sum_probs=387.2
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|++++|+++ .++...|.++++|++|++++|.+++..+..|.++++|++|++++|++++..+..|+++++|++|++++|+
T Consensus 33 L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 111 (570)
T 2z63_A 33 LDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111 (570)
T ss_dssp EECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc
Confidence 589999999 5555566999999999999999998778889999999999999999998888999999999999999999
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC-------CCCCCCEEEccCCcccccCCccccCCCCC----cEEEccCccccc
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP-------RHSNLERLYLERNNFSGTIPSFIFNASKL----SILGIRTNSFSG 149 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~~i~~ 149 (508)
+....+..++++++|++|++++|.+... .+++|++|++++|.+++..+..+..+++| +.+++++|.+.+
T Consensus 112 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~ 191 (570)
T 2z63_A 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (570)
T ss_dssp CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee
Confidence 9866555799999999999999998763 47899999999999997777888888888 899999999998
Q ss_pred ccChhhcCCCCCCEEeCCCCcCcC-------------------------------CCC----------------------
Q 045861 150 TIPSTIANLRNLQWLDLSFNYLTS-------------------------------STS---------------------- 176 (508)
Q Consensus 150 ~~~~~~~~l~~L~~L~l~~n~~~~-------------------------------~~~---------------------- 176 (508)
..+..+... +|+.|++++|.... ++.
T Consensus 192 ~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~ 270 (570)
T 2z63_A 192 IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270 (570)
T ss_dssp ECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEE
T ss_pred cCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhh
Confidence 888777665 78888887762110 000
Q ss_pred CCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCcc
Q 045861 177 ELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPIS 256 (508)
Q Consensus 177 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 256 (508)
.......+..+++|+.|+++++.+. ..|..+... +|++|++++|.+. .+|. ..+++|+.|++++|.+....+.
T Consensus 271 ~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~--~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~- 343 (570)
T 2z63_A 271 LDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF--GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE- 343 (570)
T ss_dssp ESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC--CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-
T ss_pred hhhchhhhcCcCcccEEEecCccch-hhhhhhccC--CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-
Confidence 0001144667899999999999887 466666555 9999999999887 4554 4789999999999998765554
Q ss_pred ccCCCCCCcEEccCCcCcccc--chhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCC-ccccCcc
Q 045861 257 LGKLQKLQGLYLYKNKLEGSI--PDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIP-STFLSLR 333 (508)
Q Consensus 257 l~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~ 333 (508)
..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+....+ ..+..++
T Consensus 344 -~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 344 -VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp -CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred -ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCC
Confidence 78899999999999988543 67889999999999999998765555 8899999999999999988765 5788999
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEECCCCcCC-CccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEEC
Q 045861 334 DILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLS-DSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDL 412 (508)
Q Consensus 334 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 412 (508)
+|++|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 9999999999999889999999999999999999997 468888999999999999999999888999999999999999
Q ss_pred CCCcccccCcccccCCCCCCEEeCCCCcceecCCCcccc-CCCC--cccccCCCCCCCCC
Q 045861 413 SNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESF-ANFS--DNSFMGNSFLCGSP 469 (508)
Q Consensus 413 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~l~--~l~l~~n~~~c~~~ 469 (508)
++|++++..+..+..+++|+.|++++|++++.+|....+ .++. ...+.+.+ .|.-|
T Consensus 502 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~-~C~~~ 560 (570)
T 2z63_A 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCSGS 560 (570)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESCC-BBTTT
T ss_pred CCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhccccCCCch-hhCCC
Confidence 999999988889999999999999999999888875443 2222 13344554 66544
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.1e-48 Score=398.61 Aligned_cols=449 Identities=19% Similarity=0.248 Sum_probs=349.0
Q ss_pred eecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCcc
Q 045861 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNL 81 (508)
Q Consensus 2 ~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (508)
|+++++++ ++|..+ .++|++|++++|.+++..+..|..+++|++|++++|++++..|.+|+++++|++|++++|++
T Consensus 11 ~~~~~~l~-~ip~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 11 DGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp ECTTSCCS-SCCSCC---CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCccc-cccccC---CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 56788888 888876 37899999999999877788899999999999999999988888999999999999999999
Q ss_pred ccCCchhccCCCCCCEeeCccccCCCC-------CCCCCCEEEccCCcccccCC-ccccCCCCCcEEEccCcccccccCh
Q 045861 82 IGEIPHEIGNLHNLEYLVLENNNFDGP-------RHSNLERLYLERNNFSGTIP-SFIFNASKLSILGIRTNSFSGTIPS 153 (508)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~L~~n~~~~~-------~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~ 153 (508)
.+..+..|+++++|++|++++|.+... .+++|++|++++|...+.++ ..+.++++|++|++++|.+++..|.
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 877777799999999999999988743 46789999999998443444 6788899999999999999888888
Q ss_pred hhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCC--ChhhhhcccccCeeEccCCcCcccCCh
Q 045861 154 TIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGIL--PSSMGNLSTSLEYIYMPYCRRSGRIPE 231 (508)
Q Consensus 154 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~ 231 (508)
.++.+++|++|++++|.+...+. ..+..+++|+.|++++|.+.+.. +..+....+.++.|++.++.+.+..+.
T Consensus 167 ~l~~l~~L~~L~l~~n~~~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 241 (549)
T 2z81_A 167 SLKSIRDIHHLTLHLSESAFLLE-----IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241 (549)
T ss_dssp TTTTCSEEEEEEEECSBSTTHHH-----HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred hhhccccCceEecccCcccccch-----hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence 88888888888888877654321 12345677888888888776532 222222334666666666655443222
Q ss_pred ----hhhcCCCCcEEEcccCccccc-----------------------------------cCccccCCCCCCcEEccCCc
Q 045861 232 ----EIGNLINLITMSLGINKLTGS-----------------------------------IPISLGKLQKLQGLYLYKNK 272 (508)
Q Consensus 232 ----~l~~l~~L~~L~l~~~~~~~~-----------------------------------~~~~l~~~~~L~~L~l~~n~ 272 (508)
.+..+++|+.+++++|.+.+. .+..+...++|+.|++++|.
T Consensus 242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 321 (549)
T 2z81_A 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321 (549)
T ss_dssp HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence 223445555555555544321 01112224678888999988
Q ss_pred Cccccchhh-hCCCCCcEEEeeCceeeeeCC---cccCCCCCCCEEEcCCCcccccCC--ccccCccCCcEEEccCCccc
Q 045861 273 LEGSIPDSL-CNLGRLVELQFYDNKLFGSIP---ACIGKLSPLRNLLLHSNVLTYVIP--STFLSLRDILVFNFSSNSLN 346 (508)
Q Consensus 273 l~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~L~~n~l~ 346 (508)
+. .+|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|+++
T Consensus 322 l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 322 VF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp CC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred cc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence 87 555554 679999999999999876653 447788999999999999987643 45888999999999999998
Q ss_pred cccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCccccc
Q 045861 347 GSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFE 426 (508)
Q Consensus 347 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~ 426 (508)
.+|..+..+++|++|++++|++.+ ++..+ .++|++|++++|++++. +..+++|++|++++|+++ .+|. ..
T Consensus 401 -~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~ 470 (549)
T 2z81_A 401 -PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-AS 470 (549)
T ss_dssp -CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GG
T ss_pred -cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cc
Confidence 678888889999999999999984 44332 36899999999999854 357899999999999999 4554 46
Q ss_pred CCCCCCEEeCCCCcceecCCCc-cccCCCCcccccCCCCCCCCCC
Q 045861 427 KLLYLEYLNLSFNRLKGEIPSG-ESFANFSDNSFMGNSFLCGSPN 470 (508)
Q Consensus 427 ~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~l~l~~n~~~c~~~~ 470 (508)
.+++|++|++++|++++..|.. ..+.+++.+++++|||.|+||.
T Consensus 471 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 7899999999999999766663 5688999999999999999984
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2e-46 Score=402.46 Aligned_cols=433 Identities=20% Similarity=0.153 Sum_probs=346.5
Q ss_pred cEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCC-chhccCCCCCCEeeCcc
Q 045861 24 QALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEI-PHEIGNLHNLEYLVLEN 102 (508)
Q Consensus 24 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~ 102 (508)
+..+.+++.++ .+|. ..+++++|+|++|.+++..+..|.++++|++|++++|...+.+ |.+|.++++|++|+|++
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 46888999998 5665 4689999999999999888999999999999999999655444 88899999999999999
Q ss_pred ccCCCC------CCCCCCEEEccCCcccccCCcc--ccCCCCCcEEEccCcccccccC-hhhcCCCCCCEEeCCCCcCcC
Q 045861 103 NNFDGP------RHSNLERLYLERNNFSGTIPSF--IFNASKLSILGIRTNSFSGTIP-STIANLRNLQWLDLSFNYLTS 173 (508)
Q Consensus 103 n~~~~~------~~~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~~~-~~~~~l~~L~~L~l~~n~~~~ 173 (508)
|.+... .+++|++|++++|.+++..+.. +.++++|++|++++|.+++..+ ..|+.+++|++|++++|.+..
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 998754 6789999999999998766554 8999999999999999987654 578999999999999999876
Q ss_pred CCCCCcccccccCC--CCCCEEEccCccCccCCChhhhhcc-----cccCeeEccCCcCcccCChhhhc-----------
Q 045861 174 STSELSFLSSLRNC--RNLKVIDLTGNQLHGILPSSMGNLS-----TSLEYIYMPYCRRSGRIPEEIGN----------- 235 (508)
Q Consensus 174 ~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~----------- 235 (508)
... ..+..+ ++|+.|++++|.+.+..+..+.... ..|+.|++++|.+.+..+..+..
T Consensus 163 ~~~-----~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 163 VCE-----HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp CCS-----GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred eCH-----HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 432 344444 7899999999999887766554433 14999999999766554433321
Q ss_pred ---------------------------CCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCc
Q 045861 236 ---------------------------LINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLV 288 (508)
Q Consensus 236 ---------------------------l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 288 (508)
.++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|+
T Consensus 238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 317 (844)
T 3j0a_A 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317 (844)
T ss_dssp CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCC
T ss_pred cccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCC
Confidence 26899999999999988888999999999999999999988888999999999
Q ss_pred EEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccC------------------
Q 045861 289 ELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLP------------------ 350 (508)
Q Consensus 289 ~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~------------------ 350 (508)
+|++++|.+.+..+..+..+++|+.|++++|.+....+..|..+++|++|++++|.+++...
T Consensus 318 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~ 397 (844)
T 3j0a_A 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP 397 (844)
T ss_dssp EEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCC
T ss_pred EEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccc
Confidence 99999999988888999999999999999999998888889999999999999998874211
Q ss_pred c----------------------cccCCCCCcEEECCCCcCCCccch-hhhcCCCCCEEECcCCccc-----ccCccccc
Q 045861 351 L----------------------DIGNLKVVVGIDLSRNNLSDSIPT-VIGGLSNLAFFSLAYNKLQ-----GSIPESLG 402 (508)
Q Consensus 351 ~----------------------~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~-----~~~~~~~~ 402 (508)
. .+..+++|+.|++++|++.+..+. .+..+++|+.|++++|.++ +..+..|.
T Consensus 398 ~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 477 (844)
T 3j0a_A 398 KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477 (844)
T ss_dssp CCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSS
T ss_pred ccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhc
Confidence 0 011344455555555555432221 2334455555566655554 22335577
Q ss_pred CCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccccCCCCcccccCCCCCC
Q 045861 403 DLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLC 466 (508)
Q Consensus 403 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n~~~c 466 (508)
++++|+.|+|++|++++.++..|.++++|+.|++++|++++ +|......+|+.+++++|....
T Consensus 478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV-LSHNDLPANLEILDISRNQLLA 540 (844)
T ss_dssp CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS-CCCCCCCSCCCEEEEEEECCCC
T ss_pred CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc-cChhhhhccccEEECCCCcCCC
Confidence 88889999999999998888889999999999999999984 5554444889999999996544
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.2e-47 Score=388.22 Aligned_cols=448 Identities=20% Similarity=0.243 Sum_probs=366.4
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
||+++|+++ .+|..++ ++|++|++++|.+++..+..|..+++|++|++++|++++..|..|+++++|++|++++|+
T Consensus 5 l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 5 VDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred EecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 589999999 7997773 899999999999997777789999999999999999998888999999999999999999
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC-------CCCCCCEEEccCCcccccCCccccCCCCC--cEEEccCccc--cc
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP-------RHSNLERLYLERNNFSGTIPSFIFNASKL--SILGIRTNSF--SG 149 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~i--~~ 149 (508)
+. .+|.. .+++|++|++++|.+... .+++|++|++++|.+++ ..+..+++| ++|++++|.+ .+
T Consensus 81 l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 81 LV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred ee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccc
Confidence 98 56655 899999999999998763 46789999999998875 456667777 9999999988 66
Q ss_pred ccChhhcCCC-CCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCcc-------CccCCChhhhhcccccCeeEcc
Q 045861 150 TIPSTIANLR-NLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQ-------LHGILPSSMGNLSTSLEYIYMP 221 (508)
Q Consensus 150 ~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~~L~~L~l~ 221 (508)
..|..+..+. ....+++++|.+...... ..+..+++|+.+++++|. +.+..+ .+...+ +++.|++.
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~-~L~~L~l~ 228 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILD----VSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNP-KLSNLTLN 228 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCC----CCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCT-TCCEEEEE
T ss_pred cccccccccccceEEEEeccCcchhhhhh----hhhhcccceeeccccccccccccceeecchh-hhcccc-chhhcccc
Confidence 7777666554 233566777766542211 456788999999999886 444333 455554 89999999
Q ss_pred CCcCcccCChhh---hcCCCCcEEEcccCccccccCccc-----cCCCCCCcEEccCCcCccccc-hhhhCC---CCCcE
Q 045861 222 YCRRSGRIPEEI---GNLINLITMSLGINKLTGSIPISL-----GKLQKLQGLYLYKNKLEGSIP-DSLCNL---GRLVE 289 (508)
Q Consensus 222 ~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~l~~~~~-~~~~~l---~~L~~ 289 (508)
++.+.+..+..+ ...++|++|++++|.+.+.+|..+ +.++.|+.+++++|.+ .+| ..+..+ ++|+.
T Consensus 229 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~ 306 (520)
T 2z7x_B 229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKN 306 (520)
T ss_dssp EEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSE
T ss_pred ccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeE
Confidence 887765332221 125689999999999998888888 8899999999999988 344 444444 68999
Q ss_pred EEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCcccc--ccCccccCCCCCcEEECCCC
Q 045861 290 LQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNG--SLPLDIGNLKVVVGIDLSRN 367 (508)
Q Consensus 290 L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n 367 (508)
|++++|.+.... .+..+++|++|++++|.+.+..+..+..+++|++|++++|++++ .+|..+..+++|++|++++|
T Consensus 307 L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 307 FTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred EEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence 999999875432 23678999999999999999888889999999999999999986 45677899999999999999
Q ss_pred cCCCccch-hhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCC
Q 045861 368 NLSDSIPT-VIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIP 446 (508)
Q Consensus 368 ~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 446 (508)
.+.+.+|. .+..+++|++|++++|.+++..+..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|
T Consensus 385 ~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~ 460 (520)
T 2z7x_B 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVP 460 (520)
T ss_dssp CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCC
T ss_pred cCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccC
Confidence 99975665 478899999999999999877777664 79999999999999 67777779999999999999998 677
Q ss_pred Cc--cccCCCCcccccCCCCCCCCCCCC
Q 045861 447 SG--ESFANFSDNSFMGNSFLCGSPNLQ 472 (508)
Q Consensus 447 ~~--~~~~~l~~l~l~~n~~~c~~~~~~ 472 (508)
.. ..+.+++.+++++||+.|+|+..+
T Consensus 461 ~~~~~~l~~L~~L~l~~N~~~c~c~~~~ 488 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLHTNPWDCSCPRID 488 (520)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCHHHHH
T ss_pred HHHhccCCcccEEECcCCCCcccCCchH
Confidence 64 457889999999999999998543
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.5e-46 Score=385.66 Aligned_cols=437 Identities=20% Similarity=0.253 Sum_probs=320.1
Q ss_pred CCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCC------C---------------------------CCCcccC-
Q 045861 21 PRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLT------G---------------------------LIPRDIG- 66 (508)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~------~---------------------------~~~~~~~- 66 (508)
.+++.|+++++.+.+.+|..+..+++|++|+|++|.+. + ..|..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 47788888888888888888888888888888888551 0 1111111
Q ss_pred ------------------CCCCCCeEEcc--CCccccCCchhccCCCCCCEeeCccccCCC------------------C
Q 045861 67 ------------------NLTSARALLLG--NNNLIGEIPHEIGNLHNLEYLVLENNNFDG------------------P 108 (508)
Q Consensus 67 ------------------~l~~L~~L~L~--~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~------------------~ 108 (508)
....++.+.+. +|++++ +|..++++++|++|++++|.+++ +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 11223333332 567776 78888889999999999888877 2
Q ss_pred -------CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcc-ccc-ccChhhcCC------CCCCEEeCCCCcCcC
Q 045861 109 -------RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNS-FSG-TIPSTIANL------RNLQWLDLSFNYLTS 173 (508)
Q Consensus 109 -------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~-~~~~~~~~l------~~L~~L~l~~n~~~~ 173 (508)
.+++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..++.+ ++|++|++++|.+..
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ 319 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc
Confidence 36778888888888777888888888888888888887 777 677777765 888888888888775
Q ss_pred CCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCC-CcEEEcccCccccc
Q 045861 174 STSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLIN-LITMSLGINKLTGS 252 (508)
Q Consensus 174 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~ 252 (508)
++. ...+..+++|+.|++++|.+.+.+| .+...+ +|++|++++|.+. .+|..+..+++ |++|++++|.++ .
T Consensus 320 ip~----~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~ 391 (636)
T 4eco_A 320 FPV----ETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-Y 391 (636)
T ss_dssp CCC----HHHHTTCTTCCEEECCSCCCEEECC-CCEEEE-EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-S
T ss_pred cCc----hhhhccCCCCCEEeCcCCcCccchh-hhCCCC-CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-c
Confidence 432 0157778888888888888887777 666665 8888888888877 67777888888 888888888888 6
Q ss_pred cCccccCCC--CCCcEEccCCcCccccchhhh-------CCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccc
Q 045861 253 IPISLGKLQ--KLQGLYLYKNKLEGSIPDSLC-------NLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTY 323 (508)
Q Consensus 253 ~~~~l~~~~--~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 323 (508)
+|..+...+ +|++|++++|.+.+..|..+. .+++|++|++++|.+....+..+..+++|++|++++|.++.
T Consensus 392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~ 471 (636)
T 4eco_A 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471 (636)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB
T ss_pred cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC
Confidence 676666654 788888888888877777776 67788888888888874444445567888888888888885
Q ss_pred cCCccccCc-------cCCcEEEccCCccccccCcccc--CCCCCcEEECCCCcCCCccchhhhcCCCCCEEEC------
Q 045861 324 VIPSTFLSL-------RDILVFNFSSNSLNGSLPLDIG--NLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSL------ 388 (508)
Q Consensus 324 ~~~~~~~~~-------~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L------ 388 (508)
.....+... ++|++|++++|.++ .+|..+. .+++|+.|++++|++++ +|..+..+++|++|++
T Consensus 472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCT
T ss_pred cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccc
Confidence 554444433 28888888888888 6666665 78888888888888886 7777888888888888
Q ss_pred cCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccc----cCCCCcccccCCCC
Q 045861 389 AYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGES----FANFSDNSFMGNSF 464 (508)
Q Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~----~~~l~~l~l~~n~~ 464 (508)
++|.+.+.+|..+..+++|++|++++|++. .+|..+. ++|+.|++++|++.. ++.... ......+.......
T Consensus 550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~-~~~~~~~~~~~~~~~~l~~~~~~~ 625 (636)
T 4eco_A 550 QGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS-IDLSYVCPYIEAGMYMLFYDKTQD 625 (636)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE-EECTTTHHHHHTTCCEEECCTTSE
T ss_pred ccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc-ccHHhcchhhhcccceeecCCccc
Confidence 456677788888888888888888888884 5566554 788888888888773 332211 12223344444555
Q ss_pred CCCCCCCC
Q 045861 465 LCGSPNLQ 472 (508)
Q Consensus 465 ~c~~~~~~ 472 (508)
.|+||.+.
T Consensus 626 i~~C~~L~ 633 (636)
T 4eco_A 626 IRGCDALD 633 (636)
T ss_dssp EESCGGGC
T ss_pred cCCCcccc
Confidence 66777554
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.7e-45 Score=374.32 Aligned_cols=433 Identities=19% Similarity=0.181 Sum_probs=349.4
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|++++|++++..|..+ .++++|++|++++|.+++..+..|..+++|++|++++|++++..+..|+++++|++|++++|+
T Consensus 31 L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 109 (549)
T 2z81_A 31 LDLSFNKITYIGHGDL-RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109 (549)
T ss_dssp EECCSSCCCEECSSTT-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred EECcCCccCccChhhh-hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc
Confidence 5899999995555554 999999999999999998888899999999999999999998888889999999999999999
Q ss_pred ccc-CCchhccCCCCCCEeeCccccC-CCC------CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccC
Q 045861 81 LIG-EIPHEIGNLHNLEYLVLENNNF-DGP------RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIP 152 (508)
Q Consensus 81 l~~-~~~~~~~~l~~L~~L~L~~n~~-~~~------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~ 152 (508)
+.+ ..|..++++++|++|++++|.+ ..+ .+++|++|++++|.+++..+..+..+++|++|+++.|.+.....
T Consensus 110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 189 (549)
T 2z81_A 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189 (549)
T ss_dssp CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHH
T ss_pred ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccch
Confidence 986 3567899999999999999973 222 57899999999999998899999999999999999999874433
Q ss_pred hhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhh---cccccCeeEccCCcCccc-
Q 045861 153 STIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGN---LSTSLEYIYMPYCRRSGR- 228 (508)
Q Consensus 153 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~- 228 (508)
..+..+++|++|++++|.+.+.+... ......+++|+.|+++++.+.+..+..+.. ..+.++.+++.+|.+.+.
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~ 267 (549)
T 2z81_A 190 IFADILSSVRYLELRDTNLARFQFSP--LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267 (549)
T ss_dssp HHHHSTTTBSEEEEESCBCTTCCCCC--CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS
T ss_pred hhHhhcccccEEEccCCccccccccc--cchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc
Confidence 33467999999999999988743111 122345667778888777666543333221 112556666665544321
Q ss_pred ----------------------------------CChhhhcCCCCcEEEcccCccccccCccc-cCCCCCCcEEccCCcC
Q 045861 229 ----------------------------------IPEEIGNLINLITMSLGINKLTGSIPISL-GKLQKLQGLYLYKNKL 273 (508)
Q Consensus 229 ----------------------------------~~~~l~~l~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~n~l 273 (508)
++..+...++|+.+++++|.+. .+|..+ ..+++|++|++++|.+
T Consensus 268 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l 346 (549)
T 2z81_A 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLM 346 (549)
T ss_dssp CCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCC
T ss_pred cccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcc
Confidence 1222334578999999999987 566555 5799999999999999
Q ss_pred ccccch---hhhCCCCCcEEEeeCceeeeeCC--cccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccc
Q 045861 274 EGSIPD---SLCNLGRLVELQFYDNKLFGSIP--ACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGS 348 (508)
Q Consensus 274 ~~~~~~---~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 348 (508)
.+..+. .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.++. .+..+..+++|++|++++|.++ .
T Consensus 347 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~-~ 424 (549)
T 2z81_A 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIR-V 424 (549)
T ss_dssp CHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCCS-C
T ss_pred ccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCcc-c
Confidence 876543 36789999999999999875432 457889999999999999984 5667888999999999999998 4
Q ss_pred cCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCC
Q 045861 349 LPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKL 428 (508)
Q Consensus 349 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l 428 (508)
++..+ .++|++|++++|++++.. ..+++|++|++++|+++ .+|. ...+++|++|++++|++++.+++.+..+
T Consensus 425 l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 496 (549)
T 2z81_A 425 VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRL 496 (549)
T ss_dssp CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGC
T ss_pred ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcC
Confidence 44333 368999999999999643 57899999999999998 6665 4678999999999999999988899999
Q ss_pred CCCCEEeCCCCcceecCCC
Q 045861 429 LYLEYLNLSFNRLKGEIPS 447 (508)
Q Consensus 429 ~~L~~L~l~~n~l~~~~p~ 447 (508)
++|+.|++++|++.+.+|.
T Consensus 497 ~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 497 TSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp TTCCEEECCSSCBCCCHHH
T ss_pred cccCEEEecCCCccCCCcc
Confidence 9999999999999987774
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.3e-43 Score=371.00 Aligned_cols=462 Identities=19% Similarity=0.217 Sum_probs=339.1
Q ss_pred eecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCcc
Q 045861 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNL 81 (508)
Q Consensus 2 ~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (508)
+.++-+++ ++|.++ -+++++|++++|.|+...+.+|.++++|++|+|++|+++++.+.+|+++++|++|+|++|++
T Consensus 37 ~c~~~~l~-~vP~~l---p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 37 QCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp ECTTSCCS-SCCSSS---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred ECCCCCcC-ccCCCC---CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 45566777 788554 24789999999999877777899999999999999999888888899999999999999998
Q ss_pred ccCCchhccCCCCCCEeeCccccCCCC------CCCCCCEEEccCCcccc-cCCccccCCCCCcEEEccCcccccccChh
Q 045861 82 IGEIPHEIGNLHNLEYLVLENNNFDGP------RHSNLERLYLERNNFSG-TIPSFIFNASKLSILGIRTNSFSGTIPST 154 (508)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~L~~n~~~~~------~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~ 154 (508)
.+..+..|.++++|++|++++|.++.+ .+++|++|++++|.+.. ..|..+..+++|++|++++|++++..+..
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 866667889999999999999988765 46789999999998865 35677888899999999999988777776
Q ss_pred hcCCCCC----CEEeCCCCcCcCCCCCCccc-------------------ccccCCCCCCEEEccCc-------------
Q 045861 155 IANLRNL----QWLDLSFNYLTSSTSELSFL-------------------SSLRNCRNLKVIDLTGN------------- 198 (508)
Q Consensus 155 ~~~l~~L----~~L~l~~n~~~~~~~~~~~~-------------------~~l~~~~~L~~L~l~~~------------- 198 (508)
|..+.++ ..++++.|.+..++...... ..+..+..++...+...
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 272 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 272 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCT
T ss_pred ccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccc
Confidence 6544433 35666666655432211000 01112222222221100
Q ss_pred -----------------cCcc---CCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCcccccc-----
Q 045861 199 -----------------QLHG---ILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSI----- 253 (508)
Q Consensus 199 -----------------~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----- 253 (508)
.... .....+... ..++.+.+.++.+.... .+.....++.|++.++.+....
T Consensus 273 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~ 349 (635)
T 4g8a_A 273 SALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCL-TNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTLKLK 349 (635)
T ss_dssp TTTGGGGGSEEEEEEEECCCSCEEECTTTTGGG-TTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCCBCT
T ss_pred cccccccchhhhhhhhhhhcccccchhhhhhhh-ccccccccccccccccc--ccccchhhhhhhcccccccCcCcccch
Confidence 0000 000111111 14444444444332211 1233344444444444333211
Q ss_pred --------------CccccCCCCCCcEEccCCcCcc--ccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcC
Q 045861 254 --------------PISLGKLQKLQGLYLYKNKLEG--SIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLH 317 (508)
Q Consensus 254 --------------~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 317 (508)
+.....+++|+.+++++|.+.. ..+..+..+.+|+.+++..+.... .+..+..+++|+.+++.
T Consensus 350 ~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~ 428 (635)
T 4g8a_A 350 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQ 428 (635)
T ss_dssp TCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECT
T ss_pred hhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhh
Confidence 1223457788899998887753 345667778889999998887754 44567789999999999
Q ss_pred CCcccccCC-ccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCC-CccchhhhcCCCCCEEECcCCcccc
Q 045861 318 SNVLTYVIP-STFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLS-DSIPTVIGGLSNLAFFSLAYNKLQG 395 (508)
Q Consensus 318 ~n~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~ 395 (508)
++......+ ..|..+.+++.++++.|.+....+..+..++.++.|++++|.+. ...|..|..+++|++|+|++|++++
T Consensus 429 ~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~ 508 (635)
T 4g8a_A 429 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 508 (635)
T ss_dssp TSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred hccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC
Confidence 888766544 56888999999999999999888999999999999999999754 4567889999999999999999998
Q ss_pred cCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCcc-cc-CCCCcccccCCCCCCCCCCC
Q 045861 396 SIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGE-SF-ANFSDNSFMGNSFLCGSPNL 471 (508)
Q Consensus 396 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~-~~-~~l~~l~l~~n~~~c~~~~~ 471 (508)
..|..|.++++|++|+|++|++++..+..|.++++|++|++++|++++..|... .+ .+|+.+++++|||.|+|...
T Consensus 509 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence 889999999999999999999999999999999999999999999997777653 33 68999999999999999754
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.1e-45 Score=385.64 Aligned_cols=437 Identities=19% Similarity=0.243 Sum_probs=334.7
Q ss_pred CCCcEEecCCCcCCCCCCcCCcCCCCCcEEEc-ccCCCCCCCCcc-----------------------------------
Q 045861 21 PRLQALDINNNHVTGPVPRNLWQCQELIAISL-SHNQLTGLIPRD----------------------------------- 64 (508)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L-~~n~l~~~~~~~----------------------------------- 64 (508)
.+++.|+|+++.+.+.+|..+..+++|++|+| ++|.+.+..+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46788888888888888888888888888888 666554331110
Q ss_pred ----------------cCCCCCCCeEEccC--CccccCCchhccCCCCCCEeeCccccCCC------------------C
Q 045861 65 ----------------IGNLTSARALLLGN--NNLIGEIPHEIGNLHNLEYLVLENNNFDG------------------P 108 (508)
Q Consensus 65 ----------------~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~~~~------------------~ 108 (508)
......++.+.+.. |++.+ +|..++++++|++|+|++|.+++ +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 01223344444443 67775 78888888888888888888877 2
Q ss_pred -------CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcc-ccc-ccChhhcCCC-------CCCEEeCCCCcCc
Q 045861 109 -------RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNS-FSG-TIPSTIANLR-------NLQWLDLSFNYLT 172 (508)
Q Consensus 109 -------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~-~~~~~~~~l~-------~L~~L~l~~n~~~ 172 (508)
.+++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..++.++ +|+.|++++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 36788888888888888889999999999999999998 877 6777665554 9999999999887
Q ss_pred CCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCC-CcEEEcccCcccc
Q 045861 173 SSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLIN-LITMSLGINKLTG 251 (508)
Q Consensus 173 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~ 251 (508)
.++. ...+..+++|+.|++++|.++ .+| .+..++ +|+.|++++|.+. .+|..+..+++ |+.|++++|.+.
T Consensus 562 ~ip~----~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~-~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~- 632 (876)
T 4ecn_A 562 EFPA----SASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV-KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK- 632 (876)
T ss_dssp BCCC----HHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS-EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-
T ss_pred ccCC----hhhhhcCCCCCEEECCCCCcc-cch-hhcCCC-cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-
Confidence 5432 015778889999999999888 666 666665 8999999999888 78888888888 999999999988
Q ss_pred ccCccccCCCC--CCcEEccCCcCccccchhh---h--CCCCCcEEEeeCceeeeeCCcc-cCCCCCCCEEEcCCCcccc
Q 045861 252 SIPISLGKLQK--LQGLYLYKNKLEGSIPDSL---C--NLGRLVELQFYDNKLFGSIPAC-IGKLSPLRNLLLHSNVLTY 323 (508)
Q Consensus 252 ~~~~~l~~~~~--L~~L~l~~n~l~~~~~~~~---~--~l~~L~~L~L~~n~~~~~~~~~-~~~~~~L~~L~l~~n~~~~ 323 (508)
.+|..+...+. |+.|++++|.+.+..+... . .+++|+.|++++|.+. .+|.. +..+++|+.|++++|.+..
T Consensus 633 ~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ 711 (876)
T 4ecn_A 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTS 711 (876)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSC
T ss_pred cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCc
Confidence 67777766654 9999999999876554322 2 3458999999999987 44444 4578999999999999885
Q ss_pred cCCccccC-------ccCCcEEEccCCccccccCcccc--CCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcC----
Q 045861 324 VIPSTFLS-------LRDILVFNFSSNSLNGSLPLDIG--NLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAY---- 390 (508)
Q Consensus 324 ~~~~~~~~-------~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~---- 390 (508)
.....+.. +++|++|+|++|+++ .+|..+. .+++|+.|++++|++.+ +|..+..+++|+.|++++
T Consensus 712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~l 789 (876)
T 4ecn_A 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA 789 (876)
T ss_dssp CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCT
T ss_pred cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCc
Confidence 55544443 348999999999998 6777776 89999999999999996 788888999999999976
Q ss_pred --CcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCcc-ccCCCCcccccCCCCCC-
Q 045861 391 --NKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGE-SFANFSDNSFMGNSFLC- 466 (508)
Q Consensus 391 --n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~-~~~~l~~l~l~~n~~~c- 466 (508)
|.+.+.+|..+..+++|+.|+|++|++. .+|..+. ++|+.|++++|++...-+... .........+.+|++.+
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I 866 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEE
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcccc
Confidence 7778888999999999999999999994 6776654 689999999999874333321 22335556777777665
Q ss_pred -CCCCCCC
Q 045861 467 -GSPNLQV 473 (508)
Q Consensus 467 -~~~~~~~ 473 (508)
+||.+.+
T Consensus 867 ~gC~~L~l 874 (876)
T 4ecn_A 867 RGCDALGI 874 (876)
T ss_dssp ESCGGGCC
T ss_pred CCCCCccc
Confidence 8887654
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.5e-45 Score=378.16 Aligned_cols=413 Identities=19% Similarity=0.260 Sum_probs=346.3
Q ss_pred CCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccc------c---------------------------CCchhcc-
Q 045861 45 QELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLI------G---------------------------EIPHEIG- 90 (508)
Q Consensus 45 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------~---------------------------~~~~~~~- 90 (508)
.+++.|+|+++.+.+.+|..++++++|++|+|++|.+. + ..+..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 58999999999999999999999999999999999752 1 0011111
Q ss_pred ------------------CCCCCCEeeCc--cccCCCC-----CCCCCCEEEccCCccccc-----------------CC
Q 045861 91 ------------------NLHNLEYLVLE--NNNFDGP-----RHSNLERLYLERNNFSGT-----------------IP 128 (508)
Q Consensus 91 ------------------~l~~L~~L~L~--~n~~~~~-----~~~~L~~L~l~~~~~~~~-----------------~~ 128 (508)
....++.+.+. +|.++++ .+++|++|++++|.+++. +|
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 11122222222 3444433 578999999999999975 89
Q ss_pred cccc--CCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCc-CcC--CCCCCcccccccCCCCCCEEEccCccCccC
Q 045861 129 SFIF--NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNY-LTS--STSELSFLSSLRNCRNLKVIDLTGNQLHGI 203 (508)
Q Consensus 129 ~~~~--~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~-~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 203 (508)
..+. ++++|++|++++|.+.+.+|..|+.+++|++|++++|. +++ ++..+..+..+..+++|++|++++|.++ .
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ 319 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-T 319 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-S
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-c
Confidence 9999 99999999999999999999999999999999999998 764 3332222222344589999999999999 6
Q ss_pred CCh--hhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCC-CCcEEccCCcCccccchh
Q 045861 204 LPS--SMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQK-LQGLYLYKNKLEGSIPDS 280 (508)
Q Consensus 204 ~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~~~ 280 (508)
+|. .+..+. +|++|++++|.+.+.+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..
T Consensus 320 ip~~~~l~~l~-~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~ 395 (636)
T 4eco_A 320 FPVETSLQKMK-KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNI 395 (636)
T ss_dssp CCCHHHHTTCT-TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSC
T ss_pred cCchhhhccCC-CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchh
Confidence 777 788776 99999999999998898 8999999999999999999 78888999999 999999999999 77777
Q ss_pred hhCCC--CCcEEEeeCceeeeeCCcccC-------CCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCc
Q 045861 281 LCNLG--RLVELQFYDNKLFGSIPACIG-------KLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPL 351 (508)
Q Consensus 281 ~~~l~--~L~~L~L~~n~~~~~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 351 (508)
+...+ +|++|++++|.+.+..|..+. .+++|++|++++|.+.......+..+++|++|++++|.++...+.
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~ 475 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence 76654 899999999999888888887 788999999999999977666777899999999999999943333
Q ss_pred cccCC-------CCCcEEECCCCcCCCccchhhh--cCCCCCEEECcCCcccccCcccccCCCCCCEEEC------CCCc
Q 045861 352 DIGNL-------KVVVGIDLSRNNLSDSIPTVIG--GLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDL------SNNS 416 (508)
Q Consensus 352 ~~~~l-------~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L------~~n~ 416 (508)
.+... ++|+.|++++|+++ .+|..+. .+++|++|++++|.+++ +|..+..+++|+.|++ ++|+
T Consensus 476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 476 SLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp SSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCB
T ss_pred HhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCc
Confidence 33333 39999999999999 6777776 99999999999999996 8888999999999999 5678
Q ss_pred ccccCcccccCCCCCCEEeCCCCcceecCCCccccCCCCcccccCCCCCC
Q 045861 417 FSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLC 466 (508)
Q Consensus 417 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n~~~c 466 (508)
+.+.+|..+..+++|++|++++|++ +.+|.... ++|+.+++++||+.|
T Consensus 554 l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 554 TLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCE
T ss_pred ccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCcc
Confidence 8889999999999999999999999 58998744 899999999999987
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.8e-44 Score=369.50 Aligned_cols=446 Identities=21% Similarity=0.224 Sum_probs=274.3
Q ss_pred eecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCcc
Q 045861 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNL 81 (508)
Q Consensus 2 ~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (508)
|+++|+++ .+|..+ .+++++|++++|.+++..+..|..+++|++|++++|++++..|++|.++++|++|++++|++
T Consensus 37 ~ls~~~L~-~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 37 DYSNRNLT-HVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112 (562)
T ss_dssp ECTTSCCC-SCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EcCCCCCc-cCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC
Confidence 44455555 344433 24555555555555544444455555555555555555544444555555555555555554
Q ss_pred ccCCchhccCCCCCCEeeCccccCCCC-------CCCCCCEEEccCCcccccCCccccCCCCC--cEEEccCccc--ccc
Q 045861 82 IGEIPHEIGNLHNLEYLVLENNNFDGP-------RHSNLERLYLERNNFSGTIPSFIFNASKL--SILGIRTNSF--SGT 150 (508)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~L~~n~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~i--~~~ 150 (508)
. .+|.. .+++|++|++++|.+... .+++|++|++++|.+... .+..+++| ++|++++|.+ ++.
T Consensus 113 ~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 113 Q-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGG 186 (562)
T ss_dssp C-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSS
T ss_pred C-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccccc
Confidence 4 33333 445555555555544432 223444444444444321 12222222 4444444444 333
Q ss_pred cChhhcCCCC-CCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCcc----CCChhhhhcccccCeeEccCCcC
Q 045861 151 IPSTIANLRN-LQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHG----ILPSSMGNLSTSLEYIYMPYCRR 225 (508)
Q Consensus 151 ~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~ 225 (508)
.|..+..+.. .-.+++++|.+..... ...+..+++|+.+++++|.... .....+...+ .++.+++.++.+
T Consensus 187 ~~~~l~~l~~~~l~l~l~~n~~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~-~L~~L~L~~~~l 261 (562)
T 3a79_B 187 ETESLQIPNTTVLHLVFHPNSLFSVQV----NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP-TLLNVTLQHIET 261 (562)
T ss_dssp SCCEEEECCEEEEEEEECSSSCCCCCC----EEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCS-SCEEEEEEEEEE
T ss_pred CcccccccCcceEEEEecCccchhhhh----hhcccccceEEEecccccccccchHHHHHHHHhccC-cceEEEecCCcC
Confidence 3333333220 0022333333322110 0233455566666666653110 0112233332 556666655544
Q ss_pred ccc----CChhhhcCCCCcEEEcccCccccccCccc-----cCCCCCCcEEccCCcCccccc-hhhh---CCCCCcEEEe
Q 045861 226 SGR----IPEEIGNLINLITMSLGINKLTGSIPISL-----GKLQKLQGLYLYKNKLEGSIP-DSLC---NLGRLVELQF 292 (508)
Q Consensus 226 ~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~l~~~~~-~~~~---~l~~L~~L~L 292 (508)
.+. ++. ....++|++|++++|.+.+.+|..+ ..++.|+.+++..+.+ .+| ..+. ..++|++|++
T Consensus 262 ~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 262 TWKCSVKLFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp CHHHHHHHHH-HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEE
T ss_pred cHHHHHHHHH-hhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEc
Confidence 331 111 1223478888888888887777666 5555555555555555 223 2222 2367999999
Q ss_pred eCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccc--cCccccCCCCCcEEECCCCcCC
Q 045861 293 YDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGS--LPLDIGNLKVVVGIDLSRNNLS 370 (508)
Q Consensus 293 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~ 370 (508)
++|.+.... ....+++|++|++++|.+.+..+..+..+++|++|++++|++++. .|..+..+++|++|++++|.+.
T Consensus 339 ~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 339 SDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred cCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 999874322 226789999999999999988888899999999999999999863 3567889999999999999999
Q ss_pred Cccc-hhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc-
Q 045861 371 DSIP-TVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG- 448 (508)
Q Consensus 371 ~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~- 448 (508)
+.+| ..+..+++|++|++++|.+++..+..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~ 492 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGV 492 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTS
T ss_pred CccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHH
Confidence 7455 4588899999999999999877666554 79999999999999 56666669999999999999998 67764
Q ss_pred -cccCCCCcccccCCCCCCCCCCC
Q 045861 449 -ESFANFSDNSFMGNSFLCGSPNL 471 (508)
Q Consensus 449 -~~~~~l~~l~l~~n~~~c~~~~~ 471 (508)
..+++++.+++++|||.|+|+..
T Consensus 493 ~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 493 FDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp TTTCTTCCCEECCSCCBCCCHHHH
T ss_pred HhcCCCCCEEEecCCCcCCCcchH
Confidence 46788999999999999999743
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.6e-44 Score=365.69 Aligned_cols=433 Identities=19% Similarity=0.231 Sum_probs=357.3
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|++++|+++ .++...|.++++|++|++++|.+++..|..|..+++|++|++++|+++. +|.. .+++|++|++++|+
T Consensus 26 L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~ 101 (520)
T 2z7x_B 26 LNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFNA 101 (520)
T ss_dssp EECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEECCSSC
T ss_pred EECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEeccCCc
Confidence 589999999 5555555999999999999999998888899999999999999999985 4544 89999999999999
Q ss_pred ccc-CCchhccCCCCCCEeeCccccCCCC---CCCCC--CEEEccCCcc--cccCCccccCCC-CCcEEEccCccccccc
Q 045861 81 LIG-EIPHEIGNLHNLEYLVLENNNFDGP---RHSNL--ERLYLERNNF--SGTIPSFIFNAS-KLSILGIRTNSFSGTI 151 (508)
Q Consensus 81 l~~-~~~~~~~~l~~L~~L~L~~n~~~~~---~~~~L--~~L~l~~~~~--~~~~~~~~~~l~-~L~~L~l~~~~i~~~~ 151 (508)
+.+ ..|..|+++++|++|++++|.+... .+++| ++|++++|.+ .+..|..+..+. +...+++++|.+.+.+
T Consensus 102 l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~ 181 (520)
T 2z7x_B 102 FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFI 181 (520)
T ss_dssp CSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCC
T ss_pred cccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhh
Confidence 986 4689999999999999999998754 45677 9999999999 777788777665 3446778888876655
Q ss_pred Ch-hhcCCCCCCEEeCCCCc----CcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhh--cccccCeeEccCCc
Q 045861 152 PS-TIANLRNLQWLDLSFNY----LTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGN--LSTSLEYIYMPYCR 224 (508)
Q Consensus 152 ~~-~~~~l~~L~~L~l~~n~----~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~ 224 (508)
+. .+..+++|+.+++++|. +..... .+..+..+++|+.|+++++.+.+.....+.. ..++|++|++++|.
T Consensus 182 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~---~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 258 (520)
T 2z7x_B 182 LDVSVKTVANLELSNIKCVLEDNKCSYFLS---ILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258 (520)
T ss_dssp CCCCCTTCSEEEECCEEECCSTTTTHHHHH---HHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE
T ss_pred hhhhhhcccceeeccccccccccccceeec---chhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc
Confidence 43 46789999999999886 111111 1245778899999999998877543322221 12389999999999
Q ss_pred CcccCChhh-----hcCCCCcEEEcccCccccccC-ccccCC---CCCCcEEccCCcCccccchhhhCCCCCcEEEeeCc
Q 045861 225 RSGRIPEEI-----GNLINLITMSLGINKLTGSIP-ISLGKL---QKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDN 295 (508)
Q Consensus 225 ~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~-~~l~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 295 (508)
+.+.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|
T Consensus 259 l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n 334 (520)
T 2z7x_B 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNN 334 (520)
T ss_dssp EESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSS
T ss_pred ccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECC
Confidence 998888888 8899999999999988 344 444443 67999999999987432 1368899999999999
Q ss_pred eeeeeCCcccCCCCCCCEEEcCCCccccc--CCccccCccCCcEEEccCCccccccCc-cccCCCCCcEEECCCCcCCCc
Q 045861 296 KLFGSIPACIGKLSPLRNLLLHSNVLTYV--IPSTFLSLRDILVFNFSSNSLNGSLPL-DIGNLKVVVGIDLSRNNLSDS 372 (508)
Q Consensus 296 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~ 372 (508)
.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++.
T Consensus 335 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 414 (520)
T 2z7x_B 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414 (520)
T ss_dssp CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGG
T ss_pred ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcc
Confidence 99888889999999999999999999873 446688999999999999999974554 478899999999999999877
Q ss_pred cchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCC
Q 045861 373 IPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447 (508)
Q Consensus 373 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 447 (508)
.+..+. ++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+.++.
T Consensus 415 ~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 415 IFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp GGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred hhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 666543 79999999999999 7787777999999999999999965555589999999999999999976654
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.2e-43 Score=371.28 Aligned_cols=411 Identities=18% Similarity=0.213 Sum_probs=341.4
Q ss_pred CCCcEEEcccCCCCCCCCcccCCCCCCCeEEc-cCCccccCCchhc----------------------------------
Q 045861 45 QELIAISLSHNQLTGLIPRDIGNLTSARALLL-GNNNLIGEIPHEI---------------------------------- 89 (508)
Q Consensus 45 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~---------------------------------- 89 (508)
.++..|+|+++.+.+.+|+.++++++|++|+| ++|.+.+..+...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 8887655422110
Q ss_pred -----------------cCCCCCCEeeCcc--ccCCCC-----CCCCCCEEEccCCcccc-----------------cCC
Q 045861 90 -----------------GNLHNLEYLVLEN--NNFDGP-----RHSNLERLYLERNNFSG-----------------TIP 128 (508)
Q Consensus 90 -----------------~~l~~L~~L~L~~--n~~~~~-----~~~~L~~L~l~~~~~~~-----------------~~~ 128 (508)
.....++.+.+.. |.++++ .+++|++|++++|.+++ .+|
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 1112333333333 444433 57899999999999997 389
Q ss_pred cccc--CCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCc-CcC--CCCCCcccc-cccCCCCCCEEEccCccCcc
Q 045861 129 SFIF--NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNY-LTS--STSELSFLS-SLRNCRNLKVIDLTGNQLHG 202 (508)
Q Consensus 129 ~~~~--~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~-~~~--~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~ 202 (508)
..+. ++++|++|++++|.+.+.+|..|+.+++|+.|++++|. +.+ ++..+..+. .+..+++|+.|++++|.+.
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~- 561 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE- 561 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-
Confidence 9887 99999999999999999999999999999999999998 764 333222222 4566779999999999999
Q ss_pred CCCh--hhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCC-CCcEEccCCcCccccch
Q 045861 203 ILPS--SMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQK-LQGLYLYKNKLEGSIPD 279 (508)
Q Consensus 203 ~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~~ 279 (508)
.+|. .+..++ +|+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.+. .+|.
T Consensus 562 ~ip~~~~l~~L~-~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 562 EFPASASLQKMV-KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp BCCCHHHHTTCT-TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred ccCChhhhhcCC-CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 6777 788776 9999999999998 777 8899999999999999999 78888999999 999999999998 7777
Q ss_pred hhhCCC--CCcEEEeeCceeeeeCCccc---C--CCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCcc
Q 045861 280 SLCNLG--RLVELQFYDNKLFGSIPACI---G--KLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLD 352 (508)
Q Consensus 280 ~~~~l~--~L~~L~L~~n~~~~~~~~~~---~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 352 (508)
.+...+ +|+.|++++|.+.+..+... . .+++|+.|++++|.+.......+..+++|++|+|++|.++ .+|..
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 715 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPEN 715 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChH
Confidence 776665 49999999999876554322 2 3468999999999999665556678999999999999999 55544
Q ss_pred ccC--------CCCCcEEECCCCcCCCccchhhh--cCCCCCEEECcCCcccccCcccccCCCCCCEEECCC------Cc
Q 045861 353 IGN--------LKVVVGIDLSRNNLSDSIPTVIG--GLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSN------NS 416 (508)
Q Consensus 353 ~~~--------l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~------n~ 416 (508)
+.. +++|+.|++++|++. .+|..+. .+++|+.|+|++|.+++ +|..+..+++|+.|+|++ |+
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~ 793 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNR 793 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCB
T ss_pred HhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccc
Confidence 332 238999999999999 6787776 89999999999999996 788899999999999976 78
Q ss_pred ccccCcccccCCCCCCEEeCCCCcceecCCCccccCCCCcccccCCCCCC
Q 045861 417 FSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLC 466 (508)
Q Consensus 417 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n~~~c 466 (508)
+.+.+|..+..+++|+.|++++|++ +.+|... .++|+.+++++|++..
T Consensus 794 l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l-~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 794 ILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL-TPQLYILDIADNPNIS 841 (876)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CSSSCEEECCSCTTCE
T ss_pred ccccChHHHhcCCCCCEEECCCCCC-CccCHhh-cCCCCEEECCCCCCCc
Confidence 8889999999999999999999999 6899874 3789999999998754
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.8e-42 Score=357.10 Aligned_cols=439 Identities=21% Similarity=0.189 Sum_probs=339.6
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|||++|+|+ .+|...|.++++|++|++++|.|++..+.+|.++++|++|+|++|++++..+.+|+++++|++|++++|+
T Consensus 57 LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~ 135 (635)
T 4g8a_A 57 LDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 135 (635)
T ss_dssp EECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSC
T ss_pred EEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc
Confidence 689999999 7887777999999999999999997778889999999999999999998888899999999999999999
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC-------CCCCCCEEEccCCcccccCCccccCCCCC----cEEEccCccccc
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP-------RHSNLERLYLERNNFSGTIPSFIFNASKL----SILGIRTNSFSG 149 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~~i~~ 149 (508)
+.+..+..|+++++|++|++++|.+... .+++|++|++++|++++..+..+..+.++ ..++++.|.+..
T Consensus 136 l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~ 215 (635)
T 4g8a_A 136 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 215 (635)
T ss_dssp CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccc
Confidence 9977777899999999999999998764 46899999999999987777766554433 356677666654
Q ss_pred ccChhhcCCCCCCEEeCCCCcCc-------------------------C------CC-CCC-------------------
Q 045861 150 TIPSTIANLRNLQWLDLSFNYLT-------------------------S------ST-SEL------------------- 178 (508)
Q Consensus 150 ~~~~~~~~l~~L~~L~l~~n~~~-------------------------~------~~-~~~------------------- 178 (508)
..+..+. ...++.+++.+|... . .. ...
T Consensus 216 i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~ 294 (635)
T 4g8a_A 216 IQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 294 (635)
T ss_dssp ECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSC
T ss_pred cCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccc
Confidence 3332221 112222222222100 0 00 000
Q ss_pred --cccc----------------------cccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhh
Q 045861 179 --SFLS----------------------SLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIG 234 (508)
Q Consensus 179 --~~~~----------------------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 234 (508)
.... .+.....++.|++.++.+....... ...++.+.+..+..... ....
T Consensus 295 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~L~~l~l~~n~~~~~--~~~~ 368 (635)
T 4g8a_A 295 LDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK----LKSLKRLTFTSNKGGNA--FSEV 368 (635)
T ss_dssp EEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCB----CTTCCEEEEESCCSCCB--CCCC
T ss_pred ccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCccc----chhhhhcccccccCCCC--cccc
Confidence 0001 1222233444444444433222211 12445555554443322 2244
Q ss_pred cCCCCcEEEcccCcccc--ccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCC-cccCCCCCC
Q 045861 235 NLINLITMSLGINKLTG--SIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIP-ACIGKLSPL 311 (508)
Q Consensus 235 ~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~~~L 311 (508)
.+++|+.++++.|.+.. ..+..+..+.+|+++++..+... ..+..+..+++|+.+++..+......+ ..+..++++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccccc
Confidence 68899999999998753 35566778899999999999877 445668889999999999987765443 557889999
Q ss_pred CEEEcCCCcccccCCccccCccCCcEEEccCCcc-ccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcC
Q 045861 312 RNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSL-NGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAY 390 (508)
Q Consensus 312 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 390 (508)
+.++++.|.+....+..+..++++++|++++|.+ ....|..+..+++|++|++++|++++..|..|.++++|++|+|++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 9999999999999999999999999999999975 445788899999999999999999988899999999999999999
Q ss_pred CcccccCcccccCCCCCCEEECCCCcccccCcccccCC-CCCCEEeCCCCcceecCCCc
Q 045861 391 NKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKL-LYLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 391 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~p~~ 448 (508)
|++++..+..|.++++|++|++++|++++..|+.+..+ ++|++|++++|++.+.+...
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence 99998888899999999999999999999999999988 68999999999999766643
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9.2e-42 Score=350.76 Aligned_cols=434 Identities=20% Similarity=0.225 Sum_probs=344.9
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|++++|+++ .++...|.++++|++|++++|.+++..|..|.++++|++|++++|+++. +|.. .+++|++|++++|+
T Consensus 57 L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~ 132 (562)
T 3a79_B 57 LSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHLDLSFND 132 (562)
T ss_dssp EECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEEECCSSC
T ss_pred EECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccccCCEEECCCCC
Confidence 589999999 5665555999999999999999998888999999999999999999985 4444 89999999999999
Q ss_pred cccC-CchhccCCCCCCEeeCccccCCCC---CCCCC--CEEEccCCcc--cccCCccccCCC-CCcEEEccCccccccc
Q 045861 81 LIGE-IPHEIGNLHNLEYLVLENNNFDGP---RHSNL--ERLYLERNNF--SGTIPSFIFNAS-KLSILGIRTNSFSGTI 151 (508)
Q Consensus 81 l~~~-~~~~~~~l~~L~~L~L~~n~~~~~---~~~~L--~~L~l~~~~~--~~~~~~~~~~l~-~L~~L~l~~~~i~~~~ 151 (508)
+.+. .|..|+++++|++|++++|.+... .+++| ++|++++|.+ ++..+..+..+. ..-.+++++|.+.+.+
T Consensus 133 l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~ 212 (562)
T 3a79_B 133 FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ 212 (562)
T ss_dssp CSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCC
T ss_pred ccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhh
Confidence 9863 468999999999999999998765 34455 9999999999 777888877654 1225678888877655
Q ss_pred Ch-hhcCCCCCCEEeCCCCcCcC--CCCCCcccccccCCCCCCEEEccCccCccCCChhhhh--cccccCeeEccCCcCc
Q 045861 152 PS-TIANLRNLQWLDLSFNYLTS--STSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGN--LSTSLEYIYMPYCRRS 226 (508)
Q Consensus 152 ~~-~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~ 226 (508)
+. .+..+++|+.+++++|.... .+ .....+..++.|+.+++.++.+.+.....+.. ...+|++|++++|.+.
T Consensus 213 ~~~~~~~l~~L~~L~l~~n~~~~~~l~---~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 289 (562)
T 3a79_B 213 VNMSVNALGHLQLSNIKLNDENCQRLM---TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289 (562)
T ss_dssp CEEEESSEEEEEEEEEECCSTTHHHHH---HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEEC
T ss_pred hhhcccccceEEEecccccccccchHH---HHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEee
Confidence 44 35678899999999885211 11 12245677888999999887766432111111 1138999999999999
Q ss_pred ccCChhh-----hcCCCCcEEEcccCccccccC-cccc---CCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCcee
Q 045861 227 GRIPEEI-----GNLINLITMSLGINKLTGSIP-ISLG---KLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKL 297 (508)
Q Consensus 227 ~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~-~~l~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 297 (508)
+.+|..+ ..+..|+.+++..+.+ .+| ..+. ...+|++|++++|.+.... ....+++|++|++++|.+
T Consensus 290 ~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l 365 (562)
T 3a79_B 290 ERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVF 365 (562)
T ss_dssp SCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCC
T ss_pred ccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCcc
Confidence 8888776 5566666666666655 233 2222 2367999999999986432 126889999999999999
Q ss_pred eeeCCcccCCCCCCCEEEcCCCcccccC--CccccCccCCcEEEccCCccccccC-ccccCCCCCcEEECCCCcCCCccc
Q 045861 298 FGSIPACIGKLSPLRNLLLHSNVLTYVI--PSTFLSLRDILVFNFSSNSLNGSLP-LDIGNLKVVVGIDLSRNNLSDSIP 374 (508)
Q Consensus 298 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~ 374 (508)
.+..+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++.+| ..+..+++|++|++++|++++..+
T Consensus 366 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 445 (562)
T 3a79_B 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445 (562)
T ss_dssp CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh
Confidence 8888899999999999999999998754 3568899999999999999997444 458889999999999999987665
Q ss_pred hhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc
Q 045861 375 TVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 375 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 448 (508)
..+. ++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+.+|..
T Consensus 446 ~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 446 RCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp SSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred hhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 5433 79999999999998 67776779999999999999999655555999999999999999999776654
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.9e-40 Score=329.60 Aligned_cols=140 Identities=21% Similarity=0.247 Sum_probs=105.6
Q ss_pred CCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEEC
Q 045861 309 SPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSL 388 (508)
Q Consensus 309 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 388 (508)
++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 56777777777777666666777777777777777777666667777777777777777777666777777788888888
Q ss_pred cCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc
Q 045861 389 AYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 448 (508)
++|.+++..|..|..+++|++|++++|++++..++.+..+++|++|++++|++.+.+|..
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 888887766777777888888888888887766666777788888888888887766643
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.6e-40 Score=328.20 Aligned_cols=378 Identities=21% Similarity=0.252 Sum_probs=257.5
Q ss_pred eecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCC-CCCcccCCCCCCCeEEccCCc
Q 045861 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTG-LIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 2 ~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~ 80 (508)
+.++++++ .+|. + .++|++|++++|.+++..+..|..+++|++|++++|.+.+ ..+..|.++++|++|++++|+
T Consensus 16 ~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 16 ICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp ECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred CcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 45666776 6675 3 3678888888888876667777888888888888877753 445667778888888888887
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCCCCCCCCEEEccCCcccccCC--ccccCCCCCcEEEccCcccccccChh-hcC
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIP--SFIFNASKLSILGIRTNSFSGTIPST-IAN 157 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~~~~-~~~ 157 (508)
+.+..|..|.++++|++|++++|.+.+ ..+ ..+..+++|++|++++|.+.+..|.. +..
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 152 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDG------------------AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN 152 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBT------------------HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGG
T ss_pred cCccChhhccCcccCCEEeCCCCCCCc------------------cccCcccccCcccCCEEECCCCccCccCcccccCC
Confidence 776667777778888877777776652 111 12445555555555555555444443 455
Q ss_pred CCCCCEEeCCCCcCcCCCCCCcccccccCC--CCCCEEEccCccCccCCChhhh--------hcccccCeeEccCCcCcc
Q 045861 158 LRNLQWLDLSFNYLTSSTSELSFLSSLRNC--RNLKVIDLTGNQLHGILPSSMG--------NLSTSLEYIYMPYCRRSG 227 (508)
Q Consensus 158 l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~--------~~~~~L~~L~l~~~~~~~ 227 (508)
+++|++|++++|.+...... .+..+ .+|+.++++++.+.+..+..+. .. ++|++|++++|.+.+
T Consensus 153 l~~L~~L~L~~n~l~~~~~~-----~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~ 226 (455)
T 3v47_A 153 MRRFHVLDLTFNKVKSICEE-----DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN-TSITTLDLSGNGFKE 226 (455)
T ss_dssp CTTCCEEECTTCCBSCCCTT-----TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT-CEEEEEECTTSCCCH
T ss_pred CCcccEEeCCCCcccccChh-----hhhccccccccccccccCcccccchhhcccccccccccc-ceeeeEecCCCcccc
Confidence 55555555555555443221 11111 3455555555554433222211 11 144555555554444
Q ss_pred cCChhhhcC---CCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhh--CCCCCcEEEeeCceeeeeCC
Q 045861 228 RIPEEIGNL---INLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLC--NLGRLVELQFYDNKLFGSIP 302 (508)
Q Consensus 228 ~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~~~~~~~ 302 (508)
..|..+... .+|+.+++++|...+... ..+.+.+.....+. ..++|++|++++|.+.+..+
T Consensus 227 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp HHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred cchhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccch
Confidence 444333322 455566665554432110 01111111111222 24689999999999988888
Q ss_pred cccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCC
Q 045861 303 ACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSN 382 (508)
Q Consensus 303 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 382 (508)
..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++.+..|..|..+++
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence 88999999999999999999888888999999999999999999888888999999999999999999888889999999
Q ss_pred CCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCc
Q 045861 383 LAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIP 422 (508)
Q Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 422 (508)
|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 373 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 373 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999999997767778999999999999999997655
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.6e-38 Score=316.00 Aligned_cols=391 Identities=24% Similarity=0.300 Sum_probs=158.2
Q ss_pred CCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCC-------------CeEEccCCccccCCch
Q 045861 21 PRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSA-------------RALLLGNNNLIGEIPH 87 (508)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------~~L~L~~n~l~~~~~~ 87 (508)
.+|++|++++|.+ +.+|..+.++++|++|++++|++.+..|..++++.+| ++|++++|.+.+ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 4445555555554 3444445555555555555554444444444444432 455555554442 222
Q ss_pred hccCCCCCCEeeCccccCCCC--CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEe
Q 045861 88 EIGNLHNLEYLVLENNNFDGP--RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLD 165 (508)
Q Consensus 88 ~~~~l~~L~~L~L~~n~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 165 (508)
. .++|++|++++|.++++ ..++|++|++++|++++ ++.. .++|++|++++|++++ +| .|+.+++|++|+
T Consensus 89 ~---~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID 159 (454)
T ss_dssp C---CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred C---cCCCCEEEccCCcCCccccccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence 1 23455555555544443 22445555555554442 1111 1355555555555543 33 355555555555
Q ss_pred CCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcc
Q 045861 166 LSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLG 245 (508)
Q Consensus 166 l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 245 (508)
+++|.+..++.. ..+|++|++++|.+++ .| .+..++ +|++|++++|.+.+ +|.. .++|++|+++
T Consensus 160 l~~N~l~~lp~~---------~~~L~~L~L~~n~l~~-l~-~~~~l~-~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~ 223 (454)
T 1jl5_A 160 VDNNSLKKLPDL---------PPSLEFIAAGNNQLEE-LP-ELQNLP-FLTAIYADNNSLKK-LPDL---PLSLESIVAG 223 (454)
T ss_dssp CCSSCCSCCCCC---------CTTCCEEECCSSCCSS-CC-CCTTCT-TCCEEECCSSCCSS-CCCC---CTTCCEEECC
T ss_pred CCCCcCcccCCC---------cccccEEECcCCcCCc-Cc-cccCCC-CCCEEECCCCcCCc-CCCC---cCcccEEECc
Confidence 555554443221 1245555555555543 22 233333 55555555555443 2211 1355555555
Q ss_pred cCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccC
Q 045861 246 INKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVI 325 (508)
Q Consensus 246 ~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 325 (508)
+|.+. .+| .++.+++|++|++++|.+.+ ++. ..++|++|++++|.+.+ ++.. .++|+.|++++|.+++..
T Consensus 224 ~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~ 293 (454)
T 1jl5_A 224 NNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS 293 (454)
T ss_dssp SSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES
T ss_pred CCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc
Confidence 55555 333 25555555555555555552 222 12455566665555543 2221 255666666666555432
Q ss_pred CccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCC
Q 045861 326 PSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLR 405 (508)
Q Consensus 326 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 405 (508)
. ..++|++|++++|.+++ ++. ..++|++|++++|++.+ +|.. +++|++|++++|.++ .+|. .++
T Consensus 294 ~----~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~ 357 (454)
T 1jl5_A 294 E----LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQ 357 (454)
T ss_dssp C----CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCT
T ss_pred C----cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhh
Confidence 1 11456666666665553 111 11356666666666653 3322 456666666666665 3443 245
Q ss_pred CCCEEECCCCcccc--cCcccccCC-------------CCCCEEeCCCCccee--cCCCccccCCCCcccccCCCCCCCC
Q 045861 406 SLEFLDLSNNSFSG--FIPRSFEKL-------------LYLEYLNLSFNRLKG--EIPSGESFANFSDNSFMGNSFLCGS 468 (508)
Q Consensus 406 ~L~~L~L~~n~~~~--~~~~~l~~l-------------~~L~~L~l~~n~l~~--~~p~~~~~~~l~~l~l~~n~~~c~~ 468 (508)
+|++|++++|++++ .+|.++..+ ++|++|++++|++++ .+|. ++..+.+.+|.+.|.-
T Consensus 358 ~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~-----sl~~L~~~~~~~~~~~ 432 (454)
T 1jl5_A 358 NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE-----SVEDLRMNSERVVDPY 432 (454)
T ss_dssp TCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------------------------------
T ss_pred hccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh-----hHhheeCcCcccCCcc
Confidence 66666666666665 445555444 789999999999986 4543 4666777777665543
Q ss_pred C
Q 045861 469 P 469 (508)
Q Consensus 469 ~ 469 (508)
|
T Consensus 433 ~ 433 (454)
T 1jl5_A 433 E 433 (454)
T ss_dssp -
T ss_pred c
Confidence 3
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.8e-36 Score=303.97 Aligned_cols=356 Identities=28% Similarity=0.416 Sum_probs=238.3
Q ss_pred CCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCC
Q 045861 6 NTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEI 85 (508)
Q Consensus 6 n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 85 (508)
+.+.+.++.. .+++++.|+++++.+. .++ .+..+++|++|++++|.+++..+ +.++++|++|++++|++.+..
T Consensus 34 ~~~~~~i~~~---~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~ 106 (466)
T 1o6v_A 34 TNVTDTVSQT---DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT 106 (466)
T ss_dssp SSTTSEECHH---HHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred cccccccChh---HhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccCh
Confidence 3444444432 2567888888888877 344 37778888888888888875533 788888888888888887443
Q ss_pred chhccCCCCCCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEe
Q 045861 86 PHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLD 165 (508)
Q Consensus 86 ~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 165 (508)
+ +.++++|++|++++|.+. ..+ .+..+++|++|++++|.+.. ++ .+..+++|++|+
T Consensus 107 ~--~~~l~~L~~L~L~~n~l~-------------------~~~-~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~ 162 (466)
T 1o6v_A 107 P--LANLTNLTGLTLFNNQIT-------------------DID-PLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLS 162 (466)
T ss_dssp G--GTTCTTCCEEECCSSCCC-------------------CCG-GGTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEE
T ss_pred h--hcCCCCCCEEECCCCCCC-------------------CCh-HHcCCCCCCEEECCCCccCC-Ch-hhccCCcccEee
Confidence 3 778888888888877765 222 26777888888888887764 22 477788888888
Q ss_pred CCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcc
Q 045861 166 LSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLG 245 (508)
Q Consensus 166 l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 245 (508)
+++ .+... ..+..+++|+.|++++|.+... . .+..+++|++|+++
T Consensus 163 l~~-~~~~~-------~~~~~l~~L~~L~l~~n~l~~~--~-------------------------~l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 163 FGN-QVTDL-------KPLANLTTLERLDISSNKVSDI--S-------------------------VLAKLTNLESLIAT 207 (466)
T ss_dssp EEE-SCCCC-------GGGTTCTTCCEEECCSSCCCCC--G-------------------------GGGGCTTCSEEECC
T ss_pred cCC-cccCc-------hhhccCCCCCEEECcCCcCCCC--h-------------------------hhccCCCCCEEEec
Confidence 753 22221 2366677777777777766532 1 13344555555555
Q ss_pred cCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccC
Q 045861 246 INKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVI 325 (508)
Q Consensus 246 ~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 325 (508)
+|.+.+..+ ++.+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..
T Consensus 208 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~ 281 (466)
T 1o6v_A 208 NNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 281 (466)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG
T ss_pred CCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccc
Confidence 555543332 44455666666666655532 245566666666666666653332 566667777777777666543
Q ss_pred CccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCC
Q 045861 326 PSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLR 405 (508)
Q Consensus 326 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 405 (508)
+ +..+++|++|++++|++++..+ +..+++|+.|++++|++.+..+ +..+++|++|++++|.+++. ..+..++
T Consensus 282 ~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~ 353 (466)
T 1o6v_A 282 P--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLT 353 (466)
T ss_dssp G--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred c--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCC
Confidence 3 6667777777777777765433 5677778888888887776544 66778888888888887754 4577778
Q ss_pred CCCEEECCCCcccccCcccccCCCCCCEEeCCCCccee
Q 045861 406 SLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKG 443 (508)
Q Consensus 406 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 443 (508)
+|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 354 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 354 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 88888888888877665 7777888888888888774
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.5e-37 Score=308.98 Aligned_cols=388 Identities=24% Similarity=0.271 Sum_probs=274.6
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCC-------------cEEEcccCCCCCCCCcccCC
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQEL-------------IAISLSHNQLTGLIPRDIGN 67 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-------------~~L~L~~n~l~~~~~~~~~~ 67 (508)
|++++|++ |++|..+ +++++|++|++++|.+.+.+|..+..+.+| ++|++++|.+++. |..
T Consensus 16 L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p~~--- 89 (454)
T 1jl5_A 16 PLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-PEL--- 89 (454)
T ss_dssp --------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-CSC---
T ss_pred hhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-CCC---
Confidence 57889999 6999987 999999999999999998999999888764 9999999999854 432
Q ss_pred CCCCCeEEccCCccccCCchhccCCCCCCEeeCccccCCCC--CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCc
Q 045861 68 LTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGP--RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTN 145 (508)
Q Consensus 68 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 145 (508)
.++|++|++++|.+.+ +|.. +++|++|++++|.+.++ ..++|++|++++|++++ +| .+.++++|++|++++|
T Consensus 90 ~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 90 PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCC
Confidence 4789999999999985 6643 48999999999999876 23699999999999985 66 6999999999999999
Q ss_pred ccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcC
Q 045861 146 SFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRR 225 (508)
Q Consensus 146 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 225 (508)
++++ +|.. ..+|++|++++|.+..++ .+..+++|+.|++++|.+++. |. .+++|++|++++|.+
T Consensus 164 ~l~~-lp~~---~~~L~~L~L~~n~l~~l~-------~~~~l~~L~~L~l~~N~l~~l-~~----~~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 164 SLKK-LPDL---PPSLEFIAAGNNQLEELP-------ELQNLPFLTAIYADNNSLKKL-PD----LPLSLESIVAGNNIL 227 (454)
T ss_dssp CCSC-CCCC---CTTCCEEECCSSCCSSCC-------CCTTCTTCCEEECCSSCCSSC-CC----CCTTCCEEECCSSCC
T ss_pred cCcc-cCCC---cccccEEECcCCcCCcCc-------cccCCCCCCEEECCCCcCCcC-CC----CcCcccEEECcCCcC
Confidence 9984 5543 369999999999987743 377899999999999998863 32 234999999999988
Q ss_pred cccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCccc
Q 045861 226 SGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACI 305 (508)
Q Consensus 226 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 305 (508)
. .+|. +..+++|++|++++|.+.+ +|. .+++|++|++++|.+.+ ++.. .++|++|++++|.+.+. +.
T Consensus 228 ~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~-- 294 (454)
T 1jl5_A 228 E-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE-- 294 (454)
T ss_dssp S-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC--
T ss_pred C-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC--
Confidence 7 5664 8899999999999999985 443 34899999999999985 4433 47899999999998753 21
Q ss_pred CCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCE
Q 045861 306 GKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAF 385 (508)
Q Consensus 306 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 385 (508)
..++|+.|++++|.+++... ..++|++|++++|++++ +|.. +++|++|++++|.+++ +|. .+++|++
T Consensus 295 -~~~~L~~L~l~~N~l~~i~~----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~ 361 (454)
T 1jl5_A 295 -LPPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQ 361 (454)
T ss_dssp -CCTTCCEEECCSSCCSEECC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCE
T ss_pred -cCCcCCEEECcCCcCCcccC----CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccE
Confidence 12799999999999986431 23689999999999995 5543 5899999999999994 565 4789999
Q ss_pred EECcCCcccc--cCcccccCC-------------CCCCEEECCCCcccc--cCcccccCCCCCCEEeCCCCcceecCCCc
Q 045861 386 FSLAYNKLQG--SIPESLGDL-------------RSLEFLDLSNNSFSG--FIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 386 L~L~~n~l~~--~~~~~~~~l-------------~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 448 (508)
|++++|.+++ .+|..+..+ ++|+.|++++|++++ .+| ++++.|.+.+|.+.+.+|..
T Consensus 362 L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 362 LHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp EECCSSCCSSCCCCCTTCCEEECCC-------------------------------------------------------
T ss_pred EECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCccccC
Confidence 9999999997 677788777 889999999999996 333 34778889999988665543
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.4e-37 Score=310.67 Aligned_cols=329 Identities=20% Similarity=0.185 Sum_probs=243.4
Q ss_pred CCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhccccc
Q 045861 136 KLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSL 215 (508)
Q Consensus 136 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 215 (508)
++++|++++|++++..+..|..+++|++|++++|.+..+.. ..|.++++|++|++++|.++...+..+...+ +|
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L 106 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP-----GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS-NL 106 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECCSSCCCSCCTTSSTTCT-TC
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeCh-----hhhhCCccCCEEECCCCcCCccCcccccCCC-CC
Confidence 44555555555544444445555555555555554443221 2344445555555555555443333333333 55
Q ss_pred CeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCc
Q 045861 216 EYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDN 295 (508)
Q Consensus 216 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 295 (508)
++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence 55555555555555666777888888888888888777778888888899999888888766677888899999999999
Q ss_pred eeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccch
Q 045861 296 KLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPT 375 (508)
Q Consensus 296 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 375 (508)
.+.+..+..+..+++|+.|++++|......+.......+|++|++++|.++...+..+..+++|+.|++++|.+.+..+.
T Consensus 187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (477)
T 2id5_A 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266 (477)
T ss_dssp CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTT
T ss_pred cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChh
Confidence 88877777888889999999998877666665555666899999999999855556788899999999999999977777
Q ss_pred hhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccccCCCC
Q 045861 376 VIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFS 455 (508)
Q Consensus 376 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~ 455 (508)
.|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|++.+..+....+....
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~ 346 (477)
T 2id5_A 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRW 346 (477)
T ss_dssp SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTT
T ss_pred hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhh
Confidence 88899999999999999998888889999999999999999998887888899999999999999986555444444555
Q ss_pred cccccCCCCCCCCCC
Q 045861 456 DNSFMGNSFLCGSPN 470 (508)
Q Consensus 456 ~l~l~~n~~~c~~~~ 470 (508)
.+.+.++...|.+|.
T Consensus 347 ~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 347 RLNFNRQQPTCATPE 361 (477)
T ss_dssp SSCCTTCCCBEEESG
T ss_pred ccccCccCceeCCch
Confidence 567788888887763
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.4e-35 Score=295.75 Aligned_cols=339 Identities=27% Similarity=0.397 Sum_probs=219.2
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|+++++++. .+|. +..+++|++|++++|.+.+.. . +..+++|++|++++|.+.+..+ ++++++|++|++++|.
T Consensus 51 L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~ 123 (466)
T 1o6v_A 51 LQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 123 (466)
T ss_dssp EECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCch-h-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCC
Confidence 467889988 6774 478999999999999998554 3 8999999999999999986644 9999999999999999
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCC
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRN 160 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~ 160 (508)
+.+. + .+.++++|++|++++|.+.. . ..+..+++|++|++. +.+... ..+..+++
T Consensus 124 l~~~-~-~~~~l~~L~~L~l~~n~l~~-------------------~-~~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~ 178 (466)
T 1o6v_A 124 ITDI-D-PLKNLTNLNRLELSSNTISD-------------------I-SALSGLTSLQQLSFG-NQVTDL--KPLANLTT 178 (466)
T ss_dssp CCCC-G-GGTTCTTCSEEEEEEEEECC-------------------C-GGGTTCTTCSEEEEE-ESCCCC--GGGTTCTT
T ss_pred CCCC-h-HHcCCCCCCEEECCCCccCC-------------------C-hhhccCCcccEeecC-CcccCc--hhhccCCC
Confidence 9854 3 38899999999999988762 2 246778888888886 344422 23778888
Q ss_pred CCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCc
Q 045861 161 LQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLI 240 (508)
Q Consensus 161 L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 240 (508)
|++|++++|.+..+ ..+..+++|+.|++++|.+.+..+ +..+ ++|+.|++++|.+.+. ..+..+++|+
T Consensus 179 L~~L~l~~n~l~~~-------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~ 246 (466)
T 1o6v_A 179 LERLDISSNKVSDI-------SVLAKLTNLESLIATNNQISDITP--LGIL-TNLDELSLNGNQLKDI--GTLASLTNLT 246 (466)
T ss_dssp CCEEECCSSCCCCC-------GGGGGCTTCSEEECCSSCCCCCGG--GGGC-TTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred CCEEECcCCcCCCC-------hhhccCCCCCEEEecCCccccccc--cccc-CCCCEEECCCCCcccc--hhhhcCCCCC
Confidence 99999988887653 346677888888888887765433 2222 2555555555554432 2344555555
Q ss_pred EEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCc
Q 045861 241 TMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNV 320 (508)
Q Consensus 241 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 320 (508)
.|++++|.+.+..+ +..+++|++|++++|.+.+. .+ +..+++|+.|++++|.
T Consensus 247 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~------------------------~~--~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNI------------------------SP--LAGLTALTNLELNENQ 298 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC------------------------GG--GTTCTTCSEEECCSSC
T ss_pred EEECCCCccccchh--hhcCCCCCEEECCCCccCcc------------------------cc--ccCCCccCeEEcCCCc
Confidence 55555555543222 44445555555555544432 11 3444455555555554
Q ss_pred ccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCccc
Q 045861 321 LTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPES 400 (508)
Q Consensus 321 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 400 (508)
+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++.+. ..+..+++|++|++++|++++..|
T Consensus 299 l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-- 370 (466)
T 1o6v_A 299 LEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-- 370 (466)
T ss_dssp CSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--
T ss_pred ccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--
Confidence 443322 4455555555555555554333 44555666666666665543 245556666666666666654443
Q ss_pred ccCCCCCCEEECCCCcccc
Q 045861 401 LGDLRSLEFLDLSNNSFSG 419 (508)
Q Consensus 401 ~~~l~~L~~L~L~~n~~~~ 419 (508)
+..+++|+.|++++|.+++
T Consensus 371 ~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 371 LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GTTCTTCCEEECCCEEEEC
T ss_pred hhcCCCCCEEeccCCcccC
Confidence 5556666666666666654
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.5e-36 Score=301.28 Aligned_cols=321 Identities=19% Similarity=0.154 Sum_probs=200.0
Q ss_pred cEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCccc
Q 045861 24 QALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENN 103 (508)
Q Consensus 24 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 103 (508)
+.++.+++.++ .+|..+ .+++++|++++|++++..+..|.++++|++|+|++|.+.+..|.+|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 45566666555 344433 245666666666666555566666666666666666666555666666666666666666
Q ss_pred cCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCccccc
Q 045861 104 NFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSS 183 (508)
Q Consensus 104 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 183 (508)
.+.. ..+..+.++++|++|++++|++....+..|..+++|++|++++|.+..+.. ..
T Consensus 91 ~l~~------------------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~ 147 (477)
T 2id5_A 91 RLKL------------------IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-----RA 147 (477)
T ss_dssp CCCS------------------CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-----TS
T ss_pred cCCc------------------cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-----hh
Confidence 5542 112234445555555555555554445555555555555555555444322 23
Q ss_pred ccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCC
Q 045861 184 LRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKL 263 (508)
Q Consensus 184 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L 263 (508)
|..+++|+.|++++|.+++..+..+...+ +|+.|++++|.+.+..+..+..+++|+.|++++|...+..+.......+|
T Consensus 148 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLH-GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp STTCTTCCEEEEESCCCSSCCHHHHTTCT-TCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred ccCCCCCCEEECCCCcCcccChhHhcccC-CCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccc
Confidence 44555555555555555544444444443 56666666655555555556667777777777766655555555555677
Q ss_pred CcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCC
Q 045861 264 QGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSN 343 (508)
Q Consensus 264 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n 343 (508)
++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|
T Consensus 227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence 77777777777544456777777777777777777666667777777777777777777777777777777777777777
Q ss_pred ccccccCccccCCCCCcEEECCCCcCCC
Q 045861 344 SLNGSLPLDIGNLKVVVGIDLSRNNLSD 371 (508)
Q Consensus 344 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 371 (508)
.+++..+..+..+++|++|++++|++..
T Consensus 307 ~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 307 QLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred cCceeCHhHcCCCcccCEEEccCCCccC
Confidence 7776666666777777778887777764
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.5e-35 Score=293.28 Aligned_cols=342 Identities=20% Similarity=0.231 Sum_probs=205.0
Q ss_pred hCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCE
Q 045861 18 QHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEY 97 (508)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 97 (508)
.++++|++|++++|.+++. | .+..+++|++|++++|++++. | ++.+++|++|++++|++.+. + ++++++|++
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~ 110 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTY 110 (457)
T ss_dssp HHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred hHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCE
Confidence 6788999999999998854 5 588899999999999998865 3 88889999999999988853 3 788888999
Q ss_pred eeCccccCCCC---CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCC
Q 045861 98 LVLENNNFDGP---RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSS 174 (508)
Q Consensus 98 L~L~~n~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~ 174 (508)
|++++|.++.+ .+++|++|++++|++++. .+..+++|++|++++|...+.+ .+..+++|++|++++|.+..+
T Consensus 111 L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 111 LNCDTNKLTKLDVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp EECCSSCCSCCCCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred EECCCCcCCeecCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence 88888887754 344555555555555432 2445555555555555332222 244455555555555554432
Q ss_pred CCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccC
Q 045861 175 TSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIP 254 (508)
Q Consensus 175 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 254 (508)
+ +..+++|+.|++++|.+++. .+..+++|+.|++++|.+++ +|
T Consensus 186 ~--------l~~l~~L~~L~l~~N~l~~~----------------------------~l~~l~~L~~L~Ls~N~l~~-ip 228 (457)
T 3bz5_A 186 D--------VSQNKLLNRLNCDTNNITKL----------------------------DLNQNIQLTFLDCSSNKLTE-ID 228 (457)
T ss_dssp C--------CTTCTTCCEEECCSSCCSCC----------------------------CCTTCTTCSEEECCSSCCSC-CC
T ss_pred c--------cccCCCCCEEECcCCcCCee----------------------------ccccCCCCCEEECcCCcccc-cC
Confidence 1 33444555555555554432 13444555555555555543 22
Q ss_pred ccccCCCCCCcEEccCCcCccccchhhhCCCCCcEE----------EeeCceeeeeCCcccCCCCCCCEEEcCCCccccc
Q 045861 255 ISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVEL----------QFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYV 324 (508)
Q Consensus 255 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L----------~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 324 (508)
++.+++|++|++++|.+++.. +..+++|+.| ++++|...+.+| +..+++|+.|++++|...+.
T Consensus 229 --~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~ 301 (457)
T 3bz5_A 229 --VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYL 301 (457)
T ss_dssp --CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCE
T ss_pred --ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccce
Confidence 444555555555555554322 2233344444 444443333332 23455555555555544333
Q ss_pred CCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCC
Q 045861 325 IPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDL 404 (508)
Q Consensus 325 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 404 (508)
.+. ...+|+.+++ ..+++|++|++++|++++. + +..+++|+.|++++|++++ +
T Consensus 302 l~~---~~~~L~~L~l-------------~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l 354 (457)
T 3bz5_A 302 LDC---QAAGITELDL-------------SQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------F 354 (457)
T ss_dssp EEC---TTCCCSCCCC-------------TTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------C
T ss_pred ecc---CCCcceEech-------------hhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------c
Confidence 221 1223333332 3335777777777777753 2 6677778888888877764 2
Q ss_pred CCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc
Q 045861 405 RSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 405 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 448 (508)
+.|..|++++|.+.+. ..+..|..+++++|+++|.+|..
T Consensus 355 ~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 355 SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred cccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 4556667777777754 23456778888888888888875
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3e-34 Score=281.35 Aligned_cols=333 Identities=18% Similarity=0.148 Sum_probs=202.0
Q ss_pred CCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCC
Q 045861 112 NLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLK 191 (508)
Q Consensus 112 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~ 191 (508)
+++.|+++++.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+..++. ..+..+++|+
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~ 120 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQNVPLLT 120 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH-----HHhcCCCCCC
Confidence 33344444444432223335566677777777777765555666677777777777776655432 3355666677
Q ss_pred EEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCC
Q 045861 192 VIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKN 271 (508)
Q Consensus 192 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n 271 (508)
+|++++|.++...+..+...+ +|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+++++++|
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEECCCCccCcCCHHHhcCCC-CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence 777777666644333334443 666666666666655555566667777777777766643 2445666777777776
Q ss_pred cCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCc
Q 045861 272 KLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPL 351 (508)
Q Consensus 272 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 351 (508)
.+.. +...++|++|++++|.+..... ...++|+.|++++|.+++. ..+..+++|++|++++|.+++..+.
T Consensus 197 ~l~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 197 LLST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp CCSE-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccc-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence 6552 1233466777777776654322 2235677777777766643 3556667777777777777666666
Q ss_pred cccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCC
Q 045861 352 DIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYL 431 (508)
Q Consensus 352 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 431 (508)
.+..+++|++|++++|++++ ++..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++... +..+++|
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L 341 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTL 341 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCC
T ss_pred HccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccC
Confidence 66777777777777777763 4444556677777777777776 45555666677777777777776432 5556667
Q ss_pred CEEeCCCCcceecCCCccccCCCCcccccCCCCCCCCC
Q 045861 432 EYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 432 ~~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n~~~c~~~ 469 (508)
++|++++|++.+. .....+..+....+.+++..|.++
T Consensus 342 ~~L~l~~N~~~~~-~~~~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 342 KNLTLSHNDWDCN-SLRALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp SEEECCSSCEEHH-HHHHHTTTCCTTTBCCCCSCCCTT
T ss_pred CEEEcCCCCccch-hHHHHHHHHHhhcccccCceeccc
Confidence 7777777777632 222234555555666666666654
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5e-34 Score=283.87 Aligned_cols=347 Identities=19% Similarity=0.212 Sum_probs=282.6
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|++++|++++ +| . |..+++|++|++++|.+++. + +..+++|++|++++|++++. + ++++++|++|++++|+
T Consensus 47 L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~ 117 (457)
T 3bz5_A 47 LDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNK 117 (457)
T ss_dssp EECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSC
T ss_pred EEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCc
Confidence 5899999994 56 4 48999999999999999964 4 88999999999999999975 3 8999999999999999
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC---CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcC
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP---RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIAN 157 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~ 157 (508)
+.+ ++ ++.+++|++|++++|.++++ .+++|++|++++|+..+.+ .+..+++|++|++++|++++ ++ ++.
T Consensus 118 l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~ 189 (457)
T 3bz5_A 118 LTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQ 189 (457)
T ss_dssp CSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTT
T ss_pred CCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--ccc
Confidence 985 44 89999999999999999876 5789999999999655454 57889999999999999986 44 788
Q ss_pred CCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCC
Q 045861 158 LRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLI 237 (508)
Q Consensus 158 l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 237 (508)
+++|+.|++++|.+..+ .+..+++|+.|++++|.+++. | +...+ +|++|++++|.+.+.. ...++
T Consensus 190 l~~L~~L~l~~N~l~~~--------~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~-~L~~L~l~~N~l~~~~---~~~l~ 254 (457)
T 3bz5_A 190 NKLLNRLNCDTNNITKL--------DLNQNIQLTFLDCSSNKLTEI-D--VTPLT-QLTYFDCSVNPLTELD---VSTLS 254 (457)
T ss_dssp CTTCCEEECCSSCCSCC--------CCTTCTTCSEEECCSSCCSCC-C--CTTCT-TCSEEECCSSCCSCCC---CTTCT
T ss_pred CCCCCEEECcCCcCCee--------ccccCCCCCEEECcCCccccc-C--ccccC-CCCEEEeeCCcCCCcC---HHHCC
Confidence 99999999999998864 267889999999999999874 4 55554 8999999999888754 45677
Q ss_pred CCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcC
Q 045861 238 NLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLH 317 (508)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 317 (508)
+|+.++++.+ +|+.|++++|.+.+.+| +..+++|+.|++++|...+.++. ..++|+.|+++
T Consensus 255 ~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~ 315 (457)
T 3bz5_A 255 KLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLS 315 (457)
T ss_dssp TCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCT
T ss_pred CCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechh
Confidence 8888887654 46678888888766655 46788999999999976655553 34566666665
Q ss_pred CCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccC
Q 045861 318 SNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSI 397 (508)
Q Consensus 318 ~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 397 (508)
+| ++|++|++++|++++. .+..+++|+.|++++|++.+ ++.|..|.+++|.+.+.
T Consensus 316 ~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~- 370 (457)
T 3bz5_A 316 QN-------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE- 370 (457)
T ss_dssp TC-------------TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-
T ss_pred hc-------------ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-
Confidence 54 6889999999999863 37888999999999999885 35677778888888755
Q ss_pred cccccCCCCCCEEECCCCcccccCcccccC
Q 045861 398 PESLGDLRSLEFLDLSNNSFSGFIPRSFEK 427 (508)
Q Consensus 398 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~ 427 (508)
..+..|..+++++|++++.+|..+..
T Consensus 371 ----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 371 ----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp ----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred ----ceeeecCccccccCcEEEEcChhHhc
Confidence 34567888899999999888765533
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.1e-34 Score=279.11 Aligned_cols=315 Identities=17% Similarity=0.179 Sum_probs=274.0
Q ss_pred CCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcc
Q 045861 133 NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLS 212 (508)
Q Consensus 133 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 212 (508)
.+++++.++++++.+....+..|..+++|++|++++|.+..++. ..+..+++|++|++++|.+++..+..+..++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT-----YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECT-----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccCh-----hhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 46899999999999986666668899999999999999877543 4588899999999999999988888888776
Q ss_pred cccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEe
Q 045861 213 TSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQF 292 (508)
Q Consensus 213 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 292 (508)
+|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.+++
T Consensus 118 -~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l 193 (390)
T 3o6n_A 118 -LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV 193 (390)
T ss_dssp -TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEEC
T ss_pred -CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeec
Confidence 999999999999866666678999999999999999988888899999999999999999854 3667899999999
Q ss_pred eCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCc
Q 045861 293 YDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDS 372 (508)
Q Consensus 293 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 372 (508)
++|.+.+. ...++|++|++++|.+...... ..++|++|++++|.+++. ..+..+++|++|++++|.+.+.
T Consensus 194 ~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 194 SYNLLSTL-----AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI 263 (390)
T ss_dssp CSSCCSEE-----ECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE
T ss_pred cccccccc-----CCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCc
Confidence 99987542 3456899999999999876432 357999999999999854 5788999999999999999988
Q ss_pred cchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccccC
Q 045861 373 IPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFA 452 (508)
Q Consensus 373 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~ 452 (508)
.+..+..+++|++|++++|++++ ++..+..+++|++|++++|++. .+|..+..+++|++|++++|+++ .+| ...++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~-~~~~~ 339 (390)
T 3o6n_A 264 MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK-LSTHH 339 (390)
T ss_dssp ESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC-CCTTC
T ss_pred ChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc-eeC-chhhc
Confidence 89999999999999999999984 5666788999999999999999 56667888999999999999998 455 44678
Q ss_pred CCCcccccCCCCCCCCCC
Q 045861 453 NFSDNSFMGNSFLCGSPN 470 (508)
Q Consensus 453 ~l~~l~l~~n~~~c~~~~ 470 (508)
+|+.+++++|||.|+|..
T Consensus 340 ~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 340 TLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp CCSEEECCSSCEEHHHHH
T ss_pred cCCEEEcCCCCccchhHH
Confidence 999999999999999853
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.8e-34 Score=272.15 Aligned_cols=255 Identities=33% Similarity=0.520 Sum_probs=227.7
Q ss_pred ccCeeEccCCcCcc--cCChhhhcCCCCcEEEccc-CccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEE
Q 045861 214 SLEYIYMPYCRRSG--RIPEEIGNLINLITMSLGI-NKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVEL 290 (508)
Q Consensus 214 ~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 290 (508)
+++.|+++++.+.+ .+|..+..+++|++|++++ |.+.+..|..++.+++|++|++++|.+.+..|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 67777777777776 6777888888888888884 88887888888888999999999998887888888889999999
Q ss_pred EeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCcc-CCcEEEccCCccccccCccccCCCCCcEEECCCCcC
Q 045861 291 QFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLR-DILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNL 369 (508)
Q Consensus 291 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 369 (508)
++++|.+.+..|..+..+++|++|++++|.+++..+..+..++ +|++|++++|.+++..|..+..+. |++|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 9999998888888888899999999999999888888888887 899999999999988888888887 99999999999
Q ss_pred CCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCcc
Q 045861 370 SDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGE 449 (508)
Q Consensus 370 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~ 449 (508)
.+..+..+..+++|++|++++|.+++..+. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|...
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 988899999999999999999999866555 7889999999999999999999999999999999999999999999998
Q ss_pred ccCCCCcccccCCCCCCCCCC
Q 045861 450 SFANFSDNSFMGNSFLCGSPN 470 (508)
Q Consensus 450 ~~~~l~~l~l~~n~~~c~~~~ 470 (508)
.+++++.+++.+||++|+.|.
T Consensus 289 ~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp TGGGSCGGGTCSSSEEESTTS
T ss_pred cccccChHHhcCCCCccCCCC
Confidence 899999999999999999765
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7.5e-33 Score=267.11 Aligned_cols=307 Identities=23% Similarity=0.337 Sum_probs=207.2
Q ss_pred ccCCCCCCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCC
Q 045861 89 IGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSF 168 (508)
Q Consensus 89 ~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~ 168 (508)
+..+++|++|+++++.+. .++ .+..+++|++|++++|.++... . +..+++|++|++++
T Consensus 40 ~~~l~~L~~L~l~~~~i~-------------------~~~-~~~~~~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~L~~ 97 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-------------------SIQ-GIEYLTNLEYLNLNGNQITDIS-P-LSNLVKLTNLYIGT 97 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-------------------CCT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCS
T ss_pred chhcccccEEEEeCCccc-------------------cch-hhhhcCCccEEEccCCccccch-h-hhcCCcCCEEEccC
Confidence 345566666666666554 222 3666777888888887776433 2 77778888888887
Q ss_pred CcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCc
Q 045861 169 NYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINK 248 (508)
Q Consensus 169 n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 248 (508)
|.+..+ ..+..+++|++|++++|.+.+..+ +...+ +|++|++++|.....++. +..+++|++|++++|.
T Consensus 98 n~i~~~-------~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~-~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 98 NKITDI-------SALQNLTNLRELYLNEDNISDISP--LANLT-KMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK 166 (347)
T ss_dssp SCCCCC-------GGGTTCTTCSEEECTTSCCCCCGG--GTTCT-TCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CcccCc-------hHHcCCCcCCEEECcCCcccCchh--hccCC-ceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC
Confidence 776543 346677778888887777764432 44443 777777777755544443 6777778888887777
Q ss_pred cccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCcc
Q 045861 249 LTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPST 328 (508)
Q Consensus 249 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 328 (508)
+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.++...+
T Consensus 167 ~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 167 VKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred cCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence 764332 6677777788887777764322 6677777777777777654333 6667777777777777765543
Q ss_pred ccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCC
Q 045861 329 FLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLE 408 (508)
Q Consensus 329 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (508)
+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 66777777777777777643 3566777777777777777743 3466777777777777777766667777777777
Q ss_pred EEECCCCcccccCcccccCCCCCCEEeCCCCcce
Q 045861 409 FLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 409 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
+|++++|++++..| +..+++|++|++++|+++
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 77777777776554 667777777777777764
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.3e-33 Score=287.78 Aligned_cols=333 Identities=18% Similarity=0.149 Sum_probs=250.4
Q ss_pred CCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCC
Q 045861 112 NLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLK 191 (508)
Q Consensus 112 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~ 191 (508)
+++.++++++.+....+..+..+++|++|++++|.+.+..+..|+.+++|++|++++|.+..++. ..|..+++|+
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~ 126 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQNVPLLT 126 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH-----HHHcCCCCCC
Confidence 34444455555443444446677788888888888877666777778888888888887766543 3466777888
Q ss_pred EEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCC
Q 045861 192 VIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKN 271 (508)
Q Consensus 192 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n 271 (508)
.|++++|.++...+..+..++ +|++|++++|.+.+..|..+..+++|++|++++|.+.+. .++.+++|++|++++|
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEEeeCCCCCCCCHHHhccCC-CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccC
Confidence 888888877755555555554 788888888877777777788888888888888888754 2556788888888888
Q ss_pred cCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCc
Q 045861 272 KLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPL 351 (508)
Q Consensus 272 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 351 (508)
.+.+ +...++|+.|++++|.+....+.. .++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|.
T Consensus 203 ~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 203 LLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp CCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHH
Confidence 7763 234557888898888876443322 36899999999988864 5678888999999999999888888
Q ss_pred cccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCC
Q 045861 352 DIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYL 431 (508)
Q Consensus 352 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 431 (508)
.+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++.. +..+++|
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L 347 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTL 347 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCC
T ss_pred HhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCC
Confidence 88999999999999999985 5666677899999999999998 67777888899999999999988652 6677889
Q ss_pred CEEeCCCCcceecCCCccccCCCCcccccCCCCCCCCC
Q 045861 432 EYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 432 ~~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n~~~c~~~ 469 (508)
+.|++++|++.+... ...+..+....+.+++..|+.+
T Consensus 348 ~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 348 KNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp SEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCCCCCTT
T ss_pred CEEEeeCCCCCChhH-HHHHHHHhhhccccccccCCcc
Confidence 999999999885432 2235556666778888888763
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.6e-32 Score=264.85 Aligned_cols=308 Identities=26% Similarity=0.379 Sum_probs=224.0
Q ss_pred CCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCccccCCCCCCCCCCEEEcc
Q 045861 40 NLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLE 119 (508)
Q Consensus 40 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~ 119 (508)
.+..+++|++|+++++.+... +.+..+++|++|++++|++.+. +. +..+++|++|++++|.+.
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~------------- 101 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKIT------------- 101 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-------------
T ss_pred cchhcccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCccc-------------
Confidence 356788999999999988754 3588889999999999988743 33 888888888888888765
Q ss_pred CCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCcc
Q 045861 120 RNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQ 199 (508)
Q Consensus 120 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 199 (508)
.+ ..+..+++|++|++++|.+... +. +..+++|++|++++|..... ...+..+++|+.|+++++.
T Consensus 102 ------~~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~------~~~~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 102 ------DI-SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSD------LSPLSNMTGLNYLTVTESK 166 (347)
T ss_dssp ------CC-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCC------CGGGTTCTTCCEEECCSSC
T ss_pred ------Cc-hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccc------ccchhhCCCCcEEEecCCC
Confidence 22 3577888899999988888743 33 77888888888888854331 1336677777777777776
Q ss_pred CccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccch
Q 045861 200 LHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPD 279 (508)
Q Consensus 200 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 279 (508)
+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.+++++|.+.+..+
T Consensus 167 ~~~~~~---------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~- 216 (347)
T 4fmz_A 167 VKDVTP---------------------------IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP- 216 (347)
T ss_dssp CCCCGG---------------------------GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred cCCchh---------------------------hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch-
Confidence 653321 3455566666666666553222 5566667777777776664332
Q ss_pred hhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCC
Q 045861 280 SLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVV 359 (508)
Q Consensus 280 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 359 (508)
+..+++|++|++++|.+.+..+ +..+++|++|++++|.++.. ..+..+++|++|++++|.+++. ..+..+++|
T Consensus 217 -~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L 289 (347)
T 4fmz_A 217 -VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL 289 (347)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred -hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCC
Confidence 6667777777777777654332 66777788888887777654 3577788888888888888753 357788899
Q ss_pred cEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCccc
Q 045861 360 VGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFS 418 (508)
Q Consensus 360 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~ 418 (508)
+.|++++|++.+..+..+..+++|++|++++|++++..| +..+++|++|++++|.++
T Consensus 290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999999988888889999999999999999986555 778899999999999886
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.9e-33 Score=287.33 Aligned_cols=314 Identities=18% Similarity=0.184 Sum_probs=275.6
Q ss_pred CCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcc
Q 045861 133 NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLS 212 (508)
Q Consensus 133 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 212 (508)
.+.+++.++++++.+....+..|..+++|+.|++++|.+..++. ..|..+++|+.|++++|.+++..+..+..++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT-----YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECT-----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCCh-----HHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 35789999999999997777778999999999999999887543 4588899999999999999988888888776
Q ss_pred cccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEe
Q 045861 213 TSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQF 292 (508)
Q Consensus 213 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 292 (508)
+|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+. .+..+++|+.|++
T Consensus 124 -~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l 199 (597)
T 3oja_B 124 -LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV 199 (597)
T ss_dssp -TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEEC
T ss_pred -CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhhhhhhc
Confidence 999999999999977777789999999999999999988888899999999999999999854 2567889999999
Q ss_pred eCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCc
Q 045861 293 YDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDS 372 (508)
Q Consensus 293 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 372 (508)
++|.+.+ +...++|+.|++++|.+....... .++|++|++++|.+++ +..+..+++|+.|++++|.+.+.
T Consensus 200 ~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~ 269 (597)
T 3oja_B 200 SYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI 269 (597)
T ss_dssp CSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE
T ss_pred ccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCC
Confidence 9998764 334578999999999998765433 3689999999999985 36788999999999999999988
Q ss_pred cchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccccC
Q 045861 373 IPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFA 452 (508)
Q Consensus 373 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~ 452 (508)
.|..|..+++|+.|++++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|++|++++|++. .+| ...++
T Consensus 270 ~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~-~~~-~~~~~ 345 (597)
T 3oja_B 270 MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK-LSTHH 345 (597)
T ss_dssp ESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC-CCTTC
T ss_pred CHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC-CcC-hhhcC
Confidence 89999999999999999999995 5667788999999999999999 56777889999999999999998 444 34678
Q ss_pred CCCcccccCCCCCCCCC
Q 045861 453 NFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 453 ~l~~l~l~~n~~~c~~~ 469 (508)
+|+.+++++|||.|+|.
T Consensus 346 ~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 346 TLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp CCSEEECCSSCEEHHHH
T ss_pred CCCEEEeeCCCCCChhH
Confidence 99999999999999884
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=4e-31 Score=253.15 Aligned_cols=301 Identities=23% Similarity=0.278 Sum_probs=184.5
Q ss_pred CCchhhhhCCC-----CCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCC
Q 045861 11 SLPDDMCQHLP-----RLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEI 85 (508)
Q Consensus 11 ~l~~~~~~~~~-----~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 85 (508)
++|..+...+| +++.++++++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|++.+..
T Consensus 18 ~lp~~~~~~cp~~c~c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 94 (332)
T 2ft3_A 18 SLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH 94 (332)
T ss_dssp -------CCCCSSCEEETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred cCCCcccCCCCCCCcccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC
Confidence 56665544443 7999999999988 666655 478999999999999887888999999999999999998777
Q ss_pred chhccCCCCCCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEe
Q 045861 86 PHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLD 165 (508)
Q Consensus 86 ~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 165 (508)
|..|.++++|++|++++|.+. .+|..+. ++|++|++++|.+....+..|..+++|++|+
T Consensus 95 ~~~~~~l~~L~~L~L~~n~l~-------------------~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKNHLV-------------------EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153 (332)
T ss_dssp GGGSTTCTTCCEEECCSSCCC-------------------SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEE
T ss_pred HhHhhCcCCCCEEECCCCcCC-------------------ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEE
Confidence 889999999999999998876 3333333 6777777777777765556677777777777
Q ss_pred CCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcc
Q 045861 166 LSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLG 245 (508)
Q Consensus 166 l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 245 (508)
+++|.+...+... ..+..+ +|+.|++++|.+++. |..+. ++|++|++++|.+.+..
T Consensus 154 l~~n~l~~~~~~~---~~~~~l-~L~~L~l~~n~l~~l-~~~~~---~~L~~L~l~~n~i~~~~---------------- 209 (332)
T 2ft3_A 154 MGGNPLENSGFEP---GAFDGL-KLNYLRISEAKLTGI-PKDLP---ETLNELHLDHNKIQAIE---------------- 209 (332)
T ss_dssp CCSCCCBGGGSCT---TSSCSC-CCSCCBCCSSBCSSC-CSSSC---SSCSCCBCCSSCCCCCC----------------
T ss_pred CCCCccccCCCCc---ccccCC-ccCEEECcCCCCCcc-Ccccc---CCCCEEECCCCcCCccC----------------
Confidence 7777765321111 234444 666777777666542 22111 24444444444444333
Q ss_pred cCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccC
Q 045861 246 INKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVI 325 (508)
Q Consensus 246 ~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 325 (508)
+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.++...
T Consensus 210 --------~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 210 --------LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp --------TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred --------HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccC
Confidence 344444445555555555544444444455555555555555544 34444555555555555555555444
Q ss_pred CccccC------ccCCcEEEccCCccc--cccCccccCCCCCcEEECCCCc
Q 045861 326 PSTFLS------LRDILVFNFSSNSLN--GSLPLDIGNLKVVVGIDLSRNN 368 (508)
Q Consensus 326 ~~~~~~------~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~ 368 (508)
+..|.. ...|+.+++++|.+. +..+.++..++.|+.+++++|+
T Consensus 281 ~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 443332 245666666666665 4455666667777777776663
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1.4e-30 Score=249.18 Aligned_cols=291 Identities=22% Similarity=0.290 Sum_probs=180.1
Q ss_pred CCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCc
Q 045861 22 RLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLE 101 (508)
Q Consensus 22 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 101 (508)
+++.++++++.++ .+|..+ .+++++|++++|++++..+..|+++++|++|++++|++.+..|..|.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 7899999999888 566554 3789999999999998877789999999999999999987778899999999999999
Q ss_pred cccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCccc
Q 045861 102 NNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFL 181 (508)
Q Consensus 102 ~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 181 (508)
+|.++ .+|..+. ++|++|++++|.+....+..|..+++|++|++++|.+...+.. .
T Consensus 109 ~n~l~-------------------~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~ 164 (330)
T 1xku_A 109 KNQLK-------------------ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE---N 164 (330)
T ss_dssp SSCCS-------------------BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC---T
T ss_pred CCcCC-------------------ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcC---h
Confidence 98876 3333332 5777777777777766666677777777777777776532111 1
Q ss_pred ccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCC
Q 045861 182 SSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQ 261 (508)
Q Consensus 182 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 261 (508)
..+..+++|+.|++++|.++.. |..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..
T Consensus 165 ~~~~~l~~L~~L~l~~n~l~~l-~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----- 235 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTNITTI-PQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS----- 235 (330)
T ss_dssp TGGGGCTTCCEEECCSSCCCSC-CSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT-----
T ss_pred hhccCCCCcCEEECCCCccccC-Ccccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh-----
Confidence 4466667777777777766532 22111 24444444444444444444444444444444444444333334
Q ss_pred CCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccC------ccCC
Q 045861 262 KLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLS------LRDI 335 (508)
Q Consensus 262 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~------~~~L 335 (508)
+..+++|++|++++|.+. .+|..+..+++|++|++++|.++...+..|.. ...+
T Consensus 236 -------------------~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l 295 (330)
T 1xku_A 236 -------------------LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295 (330)
T ss_dssp -------------------GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC
T ss_pred -------------------ccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccc
Confidence 444444444444444443 33344444455555555555554444333322 2455
Q ss_pred cEEEccCCcccc--ccCccccCCCCCcEEECCCCc
Q 045861 336 LVFNFSSNSLNG--SLPLDIGNLKVVVGIDLSRNN 368 (508)
Q Consensus 336 ~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~ 368 (508)
+.+++++|.+.. ..|..+..+..++.+++++|+
T Consensus 296 ~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cceEeecCcccccccCccccccccceeEEEecccC
Confidence 666666665542 344566666667777776663
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=2.3e-31 Score=252.05 Aligned_cols=252 Identities=29% Similarity=0.455 Sum_probs=226.9
Q ss_pred CCCCEEEccCccCcc--CCChhhhhcccccCeeEccC-CcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCC
Q 045861 188 RNLKVIDLTGNQLHG--ILPSSMGNLSTSLEYIYMPY-CRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQ 264 (508)
Q Consensus 188 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 264 (508)
.+++.|+++++.+.+ ..|..+..++ +|++|++++ +.+.+.+|..+..+++|++|++++|.+.+..|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 468888888888887 7788888776 899999984 888888888899999999999999999888888999999999
Q ss_pred cEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCC-CCCEEEcCCCcccccCCccccCccCCcEEEccCC
Q 045861 265 GLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLS-PLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSN 343 (508)
Q Consensus 265 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n 343 (508)
+|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..++ +|++|++++|.+.+..+..+..+. |++|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 999999999888888999999999999999999888998898887 999999999999988888888887 999999999
Q ss_pred ccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcc
Q 045861 344 SLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPR 423 (508)
Q Consensus 344 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 423 (508)
.+++..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 99988899999999999999999999866655 78899999999999999989999999999999999999999988887
Q ss_pred cccCCCCCCEEeCCCCccee
Q 045861 424 SFEKLLYLEYLNLSFNRLKG 443 (508)
Q Consensus 424 ~l~~l~~L~~L~l~~n~l~~ 443 (508)
. ..+++|+.+++++|+..+
T Consensus 287 ~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp S-TTGGGSCGGGTCSSSEEE
T ss_pred C-ccccccChHHhcCCCCcc
Confidence 6 788999999999999553
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.9e-34 Score=289.56 Aligned_cols=387 Identities=20% Similarity=0.165 Sum_probs=198.7
Q ss_pred CCCcEEecCCCcCCCCCCcC-CcCCCCCcEEEcccCCCCCC----CCcccCCCCCCCeEEccCCccccCCchhc-cCCC-
Q 045861 21 PRLQALDINNNHVTGPVPRN-LWQCQELIAISLSHNQLTGL----IPRDIGNLTSARALLLGNNNLIGEIPHEI-GNLH- 93 (508)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~- 93 (508)
++|++|+++++.++...... +..+++|++|++++|+++.. ++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45666677666665332222 45566667777766666532 23445556666666666666554333222 2233
Q ss_pred ---CCCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhc-----CCCCCCEEe
Q 045861 94 ---NLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIA-----NLRNLQWLD 165 (508)
Q Consensus 94 ---~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~-----~l~~L~~L~ 165 (508)
+|++|++++|.+.... + ..++..+..+++|++|++++|.+....+..+. ..++|++|+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~-------------~-~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 148 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAG-------------C-GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148 (461)
T ss_dssp TTCCCCEEECTTSCCBGGG-------------H-HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred CCCceeEEEccCCCCCHHH-------------H-HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEE
Confidence 3555555544433100 0 13456677777888888888877654333332 245677888
Q ss_pred CCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhc----ccccCeeEccCCcCccc----CChhhhcCC
Q 045861 166 LSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNL----STSLEYIYMPYCRRSGR----IPEEIGNLI 237 (508)
Q Consensus 166 l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~----~~~~l~~l~ 237 (508)
+++|.+..... ..+...+..+++|++|++++|.++...+..+... .++|++|++++|.+.+. ++..+..++
T Consensus 149 L~~n~l~~~~~-~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 227 (461)
T 1z7x_W 149 LEYCSLSAASC-EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA 227 (461)
T ss_dssp CTTSCCBGGGH-HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT
T ss_pred CCCCCCCHHHH-HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCC
Confidence 87776654210 0112345556777777777777654433333221 12555555555554432 234444555
Q ss_pred CCcEEEcccCcccccc-----CccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCC
Q 045861 238 NLITMSLGINKLTGSI-----PISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLR 312 (508)
Q Consensus 238 ~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~ 312 (508)
+|++|++++|.+.... +..+..+++|++|++++|.+++.... .++..+..+++|+
T Consensus 228 ~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~--------------------~l~~~l~~~~~L~ 287 (461)
T 1z7x_W 228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG--------------------DLCRVLRAKESLK 287 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--------------------HHHHHHHHCTTCC
T ss_pred CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH--------------------HHHHHHhhCCCcc
Confidence 5555555555544221 11112344555555555544432000 0223333344555
Q ss_pred EEEcCCCcccccCCccc-----cCccCCcEEEccCCccccc----cCccccCCCCCcEEECCCCcCCCccchhhhc----
Q 045861 313 NLLLHSNVLTYVIPSTF-----LSLRDILVFNFSSNSLNGS----LPLDIGNLKVVVGIDLSRNNLSDSIPTVIGG---- 379 (508)
Q Consensus 313 ~L~l~~n~~~~~~~~~~-----~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---- 379 (508)
+|++++|.+.+.....+ ...++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+..
T Consensus 288 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 367 (461)
T 1z7x_W 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 367 (461)
T ss_dssp EEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred eEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcC
Confidence 55555554433221111 1124555556655555533 3344455566666666666666544433332
Q ss_pred -CCCCCEEECcCCcccc----cCcccccCCCCCCEEECCCCcccccCccccc-----CCCCCCEEeCCCCcce
Q 045861 380 -LSNLAFFSLAYNKLQG----SIPESLGDLRSLEFLDLSNNSFSGFIPRSFE-----KLLYLEYLNLSFNRLK 442 (508)
Q Consensus 380 -l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~l~ 442 (508)
.++|++|++++|.+++ .++..+..+++|++|++++|++++.....+. ....|+.|++.++...
T Consensus 368 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 368 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 5567777777777664 4555566667777777777766643222221 1235666666666554
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=8.9e-34 Score=284.64 Aligned_cols=380 Identities=16% Similarity=0.122 Sum_probs=249.5
Q ss_pred CCCcEEEcccCCCCCCCCcc-cCCCCCCCeEEccCCcccc----CCchhccCCCCCCEeeCccccCCCCCCCCCCEEEcc
Q 045861 45 QELIAISLSHNQLTGLIPRD-IGNLTSARALLLGNNNLIG----EIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLE 119 (508)
Q Consensus 45 ~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~ 119 (508)
++|++|++++++++...... +..+++|++|++++|.+.. .++..+..+++|++|++++|.+..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~------------ 70 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD------------ 70 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH------------
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh------------
Confidence 45677777777765433222 5566777777777776653 234455666666666666665431
Q ss_pred CCcccccCCccc-cCCC----CCcEEEccCccccc----ccChhhcCCCCCCEEeCCCCcCcCCCCCCccccc-ccCCCC
Q 045861 120 RNNFSGTIPSFI-FNAS----KLSILGIRTNSFSG----TIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSS-LRNCRN 189 (508)
Q Consensus 120 ~~~~~~~~~~~~-~~l~----~L~~L~l~~~~i~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-l~~~~~ 189 (508)
..+..+ ..++ +|++|++++|.++. .++..+..+++|++|++++|.+...... .+... ....++
T Consensus 71 ------~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~-~l~~~l~~~~~~ 143 (461)
T 1z7x_W 71 ------VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ-LLCEGLLDPQCR 143 (461)
T ss_dssp ------HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH-HHHHHHTSTTCC
T ss_pred ------HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH-HHHHHHhcCCCc
Confidence 111111 1222 56667776666653 3455566666666666666665431100 00000 112334
Q ss_pred CCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCcccc-----CCCCCC
Q 045861 190 LKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLG-----KLQKLQ 264 (508)
Q Consensus 190 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~ 264 (508)
|++|++++|.+++.... .++..+..+++|++|++++|.+....+..+. ..++|+
T Consensus 144 L~~L~L~~n~l~~~~~~---------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~ 202 (461)
T 1z7x_W 144 LEKLQLEYCSLSAASCE---------------------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202 (461)
T ss_dssp CCEEECTTSCCBGGGHH---------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCC
T ss_pred ceEEECCCCCCCHHHHH---------------------HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCce
Confidence 55555555554432211 1234456677788888888877644333332 356888
Q ss_pred cEEccCCcCccc----cchhhhCCCCCcEEEeeCceeeeeC-----CcccCCCCCCCEEEcCCCccccc----CCccccC
Q 045861 265 GLYLYKNKLEGS----IPDSLCNLGRLVELQFYDNKLFGSI-----PACIGKLSPLRNLLLHSNVLTYV----IPSTFLS 331 (508)
Q Consensus 265 ~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~-----~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~ 331 (508)
+|++++|.+++. ++..+..+++|++|++++|.+.... +..+..+++|++|++++|.++.. .+..+..
T Consensus 203 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 282 (461)
T 1z7x_W 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 282 (461)
T ss_dssp EEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred EEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhh
Confidence 888888888753 4666777889999999998875432 23334689999999999998864 3445667
Q ss_pred ccCCcEEEccCCccccccCcccc-----CCCCCcEEECCCCcCCCc----cchhhhcCCCCCEEECcCCcccccCccccc
Q 045861 332 LRDILVFNFSSNSLNGSLPLDIG-----NLKVVVGIDLSRNNLSDS----IPTVIGGLSNLAFFSLAYNKLQGSIPESLG 402 (508)
Q Consensus 332 ~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 402 (508)
+++|++|++++|.++...+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.
T Consensus 283 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 362 (461)
T 1z7x_W 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHH
Confidence 89999999999998754433332 236999999999999865 456677889999999999999866554443
Q ss_pred C-----CCCCCEEECCCCcccc----cCcccccCCCCCCEEeCCCCcceec--------CCCccccCCCCcccccCCCCC
Q 045861 403 D-----LRSLEFLDLSNNSFSG----FIPRSFEKLLYLEYLNLSFNRLKGE--------IPSGESFANFSDNSFMGNSFL 465 (508)
Q Consensus 403 ~-----l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~--------~p~~~~~~~l~~l~l~~n~~~ 465 (508)
. .++|++|++++|.+++ .++..+..+++|++|++++|++... +|. ....++.+.+.++.+.
T Consensus 363 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~--~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ--PGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTS--TTCCCCEEECTTCCCC
T ss_pred HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhcc--CCcchhheeecccccC
Confidence 2 6799999999999996 6778888999999999999998743 222 2345777777777554
Q ss_pred C
Q 045861 466 C 466 (508)
Q Consensus 466 c 466 (508)
+
T Consensus 441 ~ 441 (461)
T 1z7x_W 441 E 441 (461)
T ss_dssp H
T ss_pred H
Confidence 3
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=9.7e-30 Score=243.33 Aligned_cols=269 Identities=19% Similarity=0.225 Sum_probs=141.1
Q ss_pred CCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccc
Q 045861 135 SKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTS 214 (508)
Q Consensus 135 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 214 (508)
+++++|++++|++++..+..|+.+++|++|++++|.+..+.. ..+..+++|++|++++|.++.. |..+. ++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~l~~l-~~~~~---~~ 122 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-----GAFAPLVKLERLYLSKNQLKEL-PEKMP---KT 122 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT-----TTTTTCTTCCEEECCSSCCSBC-CSSCC---TT
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH-----HHhcCCCCCCEEECCCCcCCcc-Chhhc---cc
Confidence 355555555555554444455555555555555555544321 2344555555555555554421 11111 24
Q ss_pred cCeeEccCCcCcccCChhhhcCCCCcEEEcccCcccc--ccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEe
Q 045861 215 LEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTG--SIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQF 292 (508)
Q Consensus 215 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 292 (508)
|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+.++++|++|++++|.+..
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~----------------- 185 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT----------------- 185 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-----------------
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-----------------
Confidence 4444444444444444444455555555555555432 233344444444444444444442
Q ss_pred eCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCc
Q 045861 293 YDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDS 372 (508)
Q Consensus 293 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 372 (508)
++..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++. .
T Consensus 186 --------l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 254 (330)
T 1xku_A 186 --------IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254 (330)
T ss_dssp --------CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-S
T ss_pred --------CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-c
Confidence 222111 45555555555555555555555555555555555555444445556666666666666666 4
Q ss_pred cchhhhcCCCCCEEECcCCcccccCcccccC------CCCCCEEECCCCcccc--cCcccccCCCCCCEEeCCCCc
Q 045861 373 IPTVIGGLSNLAFFSLAYNKLQGSIPESLGD------LRSLEFLDLSNNSFSG--FIPRSFEKLLYLEYLNLSFNR 440 (508)
Q Consensus 373 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~ 440 (508)
+|..+..+++|++|++++|.+++..+..|.. .+.++.|++++|.+.. ..|..|..+++++.+++++|+
T Consensus 255 lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 5555666666666666666666544444432 3567777777777653 455677777777777777764
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=8.1e-30 Score=244.04 Aligned_cols=268 Identities=20% Similarity=0.217 Sum_probs=156.6
Q ss_pred CCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccc
Q 045861 135 SKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTS 214 (508)
Q Consensus 135 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 214 (508)
+++++|++++|.+....+..|..+++|++|++++|.+..+.. ..+..+++|++|++++|.++.. |..+. ++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~l-~~~~~---~~ 124 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-----KAFSPLRKLQKLYISKNHLVEI-PPNLP---SS 124 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG-----GGSTTCTTCCEEECCSSCCCSC-CSSCC---TT
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH-----hHhhCcCCCCEEECCCCcCCcc-Ccccc---cc
Confidence 456666666666655555555666666666666665544221 3355555666666665555422 22111 24
Q ss_pred cCeeEccCCcCcccCChhhhcCCCCcEEEcccCcccc--ccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEe
Q 045861 215 LEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTG--SIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQF 292 (508)
Q Consensus 215 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 292 (508)
|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+ +|++|++++|.+++ +|
T Consensus 125 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~-------------- 188 (332)
T 2ft3_A 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IP-------------- 188 (332)
T ss_dssp CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CC--------------
T ss_pred CCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cC--------------
Confidence 5555555555444444445555666666666665532 333444444 55555555555542 22
Q ss_pred eCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCc
Q 045861 293 YDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDS 372 (508)
Q Consensus 293 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 372 (508)
..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++. .
T Consensus 189 ----------~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 255 (332)
T 2ft3_A 189 ----------KDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255 (332)
T ss_dssp ----------SSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-B
T ss_pred ----------cccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-e
Confidence 2111 45666666666666555556666666666666666666555556667777777777777776 5
Q ss_pred cchhhhcCCCCCEEECcCCcccccCcccccC------CCCCCEEECCCCccc--ccCcccccCCCCCCEEeCCCCc
Q 045861 373 IPTVIGGLSNLAFFSLAYNKLQGSIPESLGD------LRSLEFLDLSNNSFS--GFIPRSFEKLLYLEYLNLSFNR 440 (508)
Q Consensus 373 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~~~--~~~~~~l~~l~~L~~L~l~~n~ 440 (508)
+|..+..+++|++|++++|.+++..+..|.. .+.|+.|++++|.+. +..+.+|..+++|+.+++++|+
T Consensus 256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 6666777777777777777777655555543 356788888888776 5667778888888888888774
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.5e-31 Score=275.43 Aligned_cols=405 Identities=15% Similarity=0.110 Sum_probs=248.9
Q ss_pred CCchhhhhCCCCCcEEecCCCcCC---CCCCcCCc------------CCCCCcEEEcccCCCCCCCCcccCC-CC-CCCe
Q 045861 11 SLPDDMCQHLPRLQALDINNNHVT---GPVPRNLW------------QCQELIAISLSHNQLTGLIPRDIGN-LT-SARA 73 (508)
Q Consensus 11 ~l~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~------------~~~~L~~L~L~~n~l~~~~~~~~~~-l~-~L~~ 73 (508)
..|..++.++++|++|+++++... +.+|..+. .+++|++|+|++|.+++..+..+.. ++ +|++
T Consensus 63 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 63 ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLET 142 (592)
T ss_dssp SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCE
T ss_pred cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcE
Confidence 456777789999999999886421 22332222 6899999999999887655556655 34 4999
Q ss_pred EEccCCcc-cc-CCchhccCCCCCCEeeCccccCCCC----------CCCCCCEEEccCCccc----ccCCccccCCCCC
Q 045861 74 LLLGNNNL-IG-EIPHEIGNLHNLEYLVLENNNFDGP----------RHSNLERLYLERNNFS----GTIPSFIFNASKL 137 (508)
Q Consensus 74 L~L~~n~l-~~-~~~~~~~~l~~L~~L~L~~n~~~~~----------~~~~L~~L~l~~~~~~----~~~~~~~~~l~~L 137 (508)
|++++|.- .. .++.....+++|++|++++|.+.+. .+++|++|++++|.++ ..++..+.++++|
T Consensus 143 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L 222 (592)
T 3ogk_B 143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222 (592)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred EECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence 99998862 21 1233345789999999999987654 4688999999998876 2344455678899
Q ss_pred cEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCe
Q 045861 138 SILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEY 217 (508)
Q Consensus 138 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 217 (508)
++|++++|.+.+ ++..+..+++|++|+++...... ........+..+++|+.+.+++... ...+..+...+ +|++
T Consensus 223 ~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~-~L~~ 297 (592)
T 3ogk_B 223 VSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDI--GMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAA-QIRK 297 (592)
T ss_dssp CEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCT--TCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGG-GCCE
T ss_pred cEEeccCccHHH-HHHHHhhhhHHHhhccccccccc--chHHHHHHhhccccccccCccccch-hHHHHHHhhcC-CCcE
Confidence 999999988874 66778888999999987532211 1112225567778888888877532 23444444444 8888
Q ss_pred eEccCCcCcccCC-hhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccC-----------CcCccc-cchhhhCC
Q 045861 218 IYMPYCRRSGRIP-EEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYK-----------NKLEGS-IPDSLCNL 284 (508)
Q Consensus 218 L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-----------n~l~~~-~~~~~~~l 284 (508)
|++++|.+.+... ..+..+++|++|+++++......+..+..+++|++|++++ +.+++. +...+..+
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 8888877543322 3356777888888773322222333345667788888773 344432 22224457
Q ss_pred CCCcEEEeeCceeeeeCCcccCC-CCCCCEEEcC----CCccccc-----CCccccCccCCcEEEccCCc--cccccCcc
Q 045861 285 GRLVELQFYDNKLFGSIPACIGK-LSPLRNLLLH----SNVLTYV-----IPSTFLSLRDILVFNFSSNS--LNGSLPLD 352 (508)
Q Consensus 285 ~~L~~L~L~~n~~~~~~~~~~~~-~~~L~~L~l~----~n~~~~~-----~~~~~~~~~~L~~L~L~~n~--l~~~~~~~ 352 (508)
++|++|+++.+.+++.....+.. +++|++|+++ .+.+++. .+..+..+++|++|+++.|. ++......
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 77777777666665544444443 6677777775 3344432 11223445666666665433 33222222
Q ss_pred c-cCCCCCcEEECCCCcCCCc-cchhhhcCCCCCEEECcCCccccc-CcccccCCCCCCEEECCCCccccc
Q 045861 353 I-GNLKVVVGIDLSRNNLSDS-IPTVIGGLSNLAFFSLAYNKLQGS-IPESLGDLRSLEFLDLSNNSFSGF 420 (508)
Q Consensus 353 ~-~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~ 420 (508)
+ ..+++|++|++++|++++. .+..+.++++|++|++++|.+++. ++..+..+++|++|++++|+++..
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 2 2355566666666665542 233345556666666666665433 222234455666666666665543
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.2e-28 Score=243.25 Aligned_cols=250 Identities=21% Similarity=0.262 Sum_probs=161.7
Q ss_pred CCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEcc
Q 045861 190 LKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLY 269 (508)
Q Consensus 190 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 269 (508)
...++..+..++ .+|..+ ++.++.|++++|.+.+..+..+..+++|++|++++|.+....+..+.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 456666666665 333322 2367777777777776666667777777777777777766666667777777777777
Q ss_pred CCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCC-CcccccCCccccCccCCcEEEccCCccccc
Q 045861 270 KNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHS-NVLTYVIPSTFLSLRDILVFNFSSNSLNGS 348 (508)
Q Consensus 270 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 348 (508)
+|.++...+..|..+++|++|++++|.+....+..+..+++|++|++++ +.+....+..|..+++|++|++++|.++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 7777655555666777777777777776666666666777777777776 3344444455666667777777777666 3
Q ss_pred cCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCC
Q 045861 349 LPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKL 428 (508)
Q Consensus 349 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l 428 (508)
+| .+..+++|++|++++|++.+..+..|..+++|++|++++|.+++..+..|..+++|+.|+|++|++++..++.|..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 33 35556666666666666665556666666666666666666665556666666666666666666665555566666
Q ss_pred CCCCEEeCCCCcceecC
Q 045861 429 LYLEYLNLSFNRLKGEI 445 (508)
Q Consensus 429 ~~L~~L~l~~n~l~~~~ 445 (508)
++|+.|++++|++.+..
T Consensus 279 ~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 279 HHLERIHLHHNPWNCNC 295 (440)
T ss_dssp TTCCEEECCSSCEECSS
T ss_pred cCCCEEEcCCCCccCCC
Confidence 66666666666665433
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.8e-28 Score=243.39 Aligned_cols=251 Identities=20% Similarity=0.247 Sum_probs=172.0
Q ss_pred CCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEcc
Q 045861 190 LKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLY 269 (508)
Q Consensus 190 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 269 (508)
...++.++..++. +|.. .++++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|+++
T Consensus 56 ~~~v~c~~~~l~~-iP~~---~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQG---IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSS-CCSC---CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCc-cCCC---CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4566666666653 3332 23477777887777777777777777777777777777776666777777777777777
Q ss_pred CCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCC-CcccccCCccccCccCCcEEEccCCccccc
Q 045861 270 KNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHS-NVLTYVIPSTFLSLRDILVFNFSSNSLNGS 348 (508)
Q Consensus 270 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 348 (508)
+|.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++ +.+....+..|..+++|++|++++|.+++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 7777765556677777777777777777666666677777777777776 344445555666777777777777777633
Q ss_pred cCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCC
Q 045861 349 LPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKL 428 (508)
Q Consensus 349 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l 428 (508)
| .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|+.|+|++|++++..++.+..+
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 3 35666677777777777776666667777777777777777766666666667777777777777776666666666
Q ss_pred CCCCEEeCCCCcceecCC
Q 045861 429 LYLEYLNLSFNRLKGEIP 446 (508)
Q Consensus 429 ~~L~~L~l~~n~l~~~~p 446 (508)
++|+.|++++|++.+...
T Consensus 290 ~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TTCCEEECCSSCEECSTT
T ss_pred cCCCEEEccCCCcCCCCC
Confidence 777777777776664333
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2e-28 Score=231.69 Aligned_cols=255 Identities=20% Similarity=0.178 Sum_probs=160.0
Q ss_pred ccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccc--cCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEE
Q 045861 214 SLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGS--IPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQ 291 (508)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 291 (508)
++++|++++|.+....+..+..+++|++|++++|.+... .+..+..+++|++|++++|.+. .++..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence 444444444444433333355566666666666665522 2344555666666666666665 3444566666777777
Q ss_pred eeCceeeeeCC-cccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCcccc-ccCccccCCCCCcEEECCCCcC
Q 045861 292 FYDNKLFGSIP-ACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNG-SLPLDIGNLKVVVGIDLSRNNL 369 (508)
Q Consensus 292 L~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l 369 (508)
+++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 77776654433 456666777777777777766666666677777777777777764 4566677777777777777777
Q ss_pred CCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCC-CCCEEeCCCCcceecCCCc
Q 045861 370 SDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLL-YLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 370 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~p~~ 448 (508)
.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..++ +|++|++++|++.+..+..
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~ 267 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 267 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGH
T ss_pred CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChH
Confidence 766666677777777777777777765555667777777777777777777777777663 7777777777776443322
Q ss_pred cc---cCCCCcccccCCCCCCCCC
Q 045861 449 ES---FANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 449 ~~---~~~l~~l~l~~n~~~c~~~ 469 (508)
.. +...+.+....+...|..|
T Consensus 268 ~~~~~l~~~~~~~~~~~~~~C~~p 291 (306)
T 2z66_A 268 SFLQWIKDQRQLLVEVERMECATP 291 (306)
T ss_dssp HHHHHHHHTGGGBSCGGGCBEEES
T ss_pred HHHHHHHhhhhhhccccccccCCc
Confidence 11 1223334445555566544
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=5.2e-29 Score=240.55 Aligned_cols=255 Identities=16% Similarity=0.162 Sum_probs=168.3
Q ss_pred ccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEee
Q 045861 214 SLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFY 293 (508)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 293 (508)
++++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 55555555555554444456666677777777777666556666677777777777777765444446677777777777
Q ss_pred CceeeeeCC-cccCCCCCCCEEEcCCC-cccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCC
Q 045861 294 DNKLFGSIP-ACIGKLSPLRNLLLHSN-VLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSD 371 (508)
Q Consensus 294 ~n~~~~~~~-~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 371 (508)
+|.+..... ..+..+++|++|++++| .+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 776653333 35666777777777776 3555556667777777777777777776667777777777777777777764
Q ss_pred ccchhhhcCCCCCEEECcCCcccccCcccc---cCCCCCCEEECCCCcccc----cCcccccCCCCCCEEeCCCCcceec
Q 045861 372 SIPTVIGGLSNLAFFSLAYNKLQGSIPESL---GDLRSLEFLDLSNNSFSG----FIPRSFEKLLYLEYLNLSFNRLKGE 444 (508)
Q Consensus 372 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~ 444 (508)
.....+..+++|++|++++|.+++..+..+ ...+.++.++++++.+.+ .+|+.+..+++|++|++++|+++ .
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~ 291 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-S 291 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-C
T ss_pred chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-c
Confidence 333344557777777777777765433322 234567777777777665 34556677777777888777777 5
Q ss_pred CCCc--cccCCCCcccccCCCCCCCCC
Q 045861 445 IPSG--ESFANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 445 ~p~~--~~~~~l~~l~l~~n~~~c~~~ 469 (508)
+|.. ..+++|+.+++++||+.|+||
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 6654 356677777778888888776
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=8.9e-28 Score=227.20 Aligned_cols=279 Identities=19% Similarity=0.250 Sum_probs=208.7
Q ss_pred cEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCe
Q 045861 138 SILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEY 217 (508)
Q Consensus 138 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 217 (508)
+.++.+++.++ .+|..+ .+++++|++++|.+..++. ..|..+++|++|++++|.++..
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~-----~~~~~l~~L~~L~L~~n~l~~~-------------- 67 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPH-----GVFDKLTQLTKLSLSSNGLSFK-------------- 67 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCT-----TTTTTCTTCSEEECCSSCCCEE--------------
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCH-----hHhhccccCCEEECCCCccCcc--------------
Confidence 34555555555 333322 2456666666666554332 2245555566666655554421
Q ss_pred eEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccc-hhhhCCCCCcEEEeeCce
Q 045861 218 IYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIP-DSLCNLGRLVELQFYDNK 296 (508)
Q Consensus 218 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~ 296 (508)
+..+..+..+++|++|++++|.+. .++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.
T Consensus 68 ---------~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 68 ---------GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137 (306)
T ss_dssp ---------EEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC
T ss_pred ---------cCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc
Confidence 112344556778888888888877 456668888889999998888875544 568888999999999998
Q ss_pred eeeeCCcccCCCCCCCEEEcCCCcccc-cCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccch
Q 045861 297 LFGSIPACIGKLSPLRNLLLHSNVLTY-VIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPT 375 (508)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 375 (508)
+.+..+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+.
T Consensus 138 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence 888888888889999999999999886 5677888999999999999999987788899999999999999999977777
Q ss_pred hhhcCCCCCEEECcCCcccccCcccccCCC-CCCEEECCCCcccccCc--ccccCCCCCCEEeCCCCcceecCCCc
Q 045861 376 VIGGLSNLAFFSLAYNKLQGSIPESLGDLR-SLEFLDLSNNSFSGFIP--RSFEKLLYLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 376 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~--~~l~~l~~L~~L~l~~n~l~~~~p~~ 448 (508)
.+..+++|++|++++|.+++..+..+..++ +|++|++++|.+...-+ .....+...+.+.+..+.+.+..|..
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence 889999999999999999988888888884 99999999999986322 11233445666777788888777765
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=3.7e-28 Score=227.32 Aligned_cols=233 Identities=22% Similarity=0.215 Sum_probs=138.6
Q ss_pred CCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCce-eeeeCCcccCCCCCCCEEE
Q 045861 237 INLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNK-LFGSIPACIGKLSPLRNLL 315 (508)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L~ 315 (508)
+++++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 345555555555554444445555555555555555554445555555555555555554 4444455555566666666
Q ss_pred cCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccc
Q 045861 316 LHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQG 395 (508)
Q Consensus 316 l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 395 (508)
+++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 66666665555556666666666666666665555556666666666666666665444456666677777777777666
Q ss_pred cCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccccCCCCcccccCCCCCCCCC
Q 045861 396 SIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 396 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n~~~c~~~ 469 (508)
..+..+..+++|+.|++++|++++..++.+..+++|++|++++|++.+..+.......++.+....+.+.|.-|
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEES
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCc
Confidence 66666666677777777777776655566666777777777777766544443333444445555555555544
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1e-30 Score=270.91 Aligned_cols=397 Identities=15% Similarity=0.110 Sum_probs=278.1
Q ss_pred CcCCcCCCCCcEEEcccCCCC---CCCCcccC------------CCCCCCeEEccCCccccCCchhccC-CC-CCCEeeC
Q 045861 38 PRNLWQCQELIAISLSHNQLT---GLIPRDIG------------NLTSARALLLGNNNLIGEIPHEIGN-LH-NLEYLVL 100 (508)
Q Consensus 38 ~~~~~~~~~L~~L~L~~n~l~---~~~~~~~~------------~l~~L~~L~L~~n~l~~~~~~~~~~-l~-~L~~L~L 100 (508)
+..+..+++|++|+++++... +..|..++ .+++|++|+|++|.+.+..+..+.. ++ +|++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 344567889999999886431 22333333 6889999999999887666666665 34 4999999
Q ss_pred cccc-CCCC-------CCCCCCEEEccCCcccccC----CccccCCCCCcEEEccCcccc----cccChhhcCCCCCCEE
Q 045861 101 ENNN-FDGP-------RHSNLERLYLERNNFSGTI----PSFIFNASKLSILGIRTNSFS----GTIPSTIANLRNLQWL 164 (508)
Q Consensus 101 ~~n~-~~~~-------~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~i~----~~~~~~~~~l~~L~~L 164 (508)
++|. +... .+++|++|++++|.+++.. +.....+++|++|++++|.++ ..++..+..+++|++|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 9886 2211 5789999999999876553 234456789999999998886 3444556678999999
Q ss_pred eCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCc---cCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcE
Q 045861 165 DLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLH---GILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLIT 241 (508)
Q Consensus 165 ~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 241 (508)
++++|.+..++ ..+..+++|+.|.++..... ......+... ++|+.+.+.++. ...+|..+..+++|++
T Consensus 226 ~L~~~~~~~l~------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~-~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 226 KVGDFEILELV------GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP-RKLCRLGLSYMG-PNEMPILFPFAAQIRK 297 (592)
T ss_dssp ECSSCBGGGGH------HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC-TTCCEEEETTCC-TTTGGGGGGGGGGCCE
T ss_pred eccCccHHHHH------HHHhhhhHHHhhcccccccccchHHHHHHhhcc-ccccccCccccc-hhHHHHHHhhcCCCcE
Confidence 99998766532 45677888999998753222 1222333333 388888887753 3356677778889999
Q ss_pred EEcccCccccccC-ccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeC-----------ceeeee-CCcccCCC
Q 045861 242 MSLGINKLTGSIP-ISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYD-----------NKLFGS-IPACIGKL 308 (508)
Q Consensus 242 L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-----------n~~~~~-~~~~~~~~ 308 (508)
|++++|.+..... ..+..+++|++|+++++.....++..+..+++|++|++++ +.++.. .......+
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 9999988654333 3467889999999984433333444556788999999994 344432 22223457
Q ss_pred CCCCEEEcCCCcccccCCccccC-ccCCcEEEcc----CCccccc-----cCccccCCCCCcEEECCCCc--CCCccchh
Q 045861 309 SPLRNLLLHSNVLTYVIPSTFLS-LRDILVFNFS----SNSLNGS-----LPLDIGNLKVVVGIDLSRNN--LSDSIPTV 376 (508)
Q Consensus 309 ~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~~~~ 376 (508)
++|++|+++.+.+++.....+.. +++|++|+++ .+.+++. ++..+..+++|+.|+++.|. +++..+..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 89999999888887655544444 7889999996 5566642 33346678899999997654 66555554
Q ss_pred hh-cCCCCCEEECcCCccccc-CcccccCCCCCCEEECCCCccccc-CcccccCCCCCCEEeCCCCcce
Q 045861 377 IG-GLSNLAFFSLAYNKLQGS-IPESLGDLRSLEFLDLSNNSFSGF-IPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 377 ~~-~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
+. .+++|++|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|+++
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 44 488999999999998763 345557789999999999998754 3344467899999999999976
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.1e-28 Score=235.13 Aligned_cols=257 Identities=17% Similarity=0.146 Sum_probs=168.0
Q ss_pred CCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEcc
Q 045861 190 LKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLY 269 (508)
Q Consensus 190 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 269 (508)
|++|++++|.+++..+..+...+ +|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus 54 L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 54 VKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred CcEEECCCCcCcccCHHHhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 44444444444433333333332 44444444444444444455566666666666666664444446666677777777
Q ss_pred CCcCccccc-hhhhCCCCCcEEEeeCc-eeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCcccc
Q 045861 270 KNKLEGSIP-DSLCNLGRLVELQFYDN-KLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNG 347 (508)
Q Consensus 270 ~n~l~~~~~-~~~~~l~~L~~L~L~~n-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 347 (508)
+|.+.+... ..+..+++|++|++++| .+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 776663332 35666777777777776 3555555666777777777777777777666777777777777777777764
Q ss_pred ccCccccCCCCCcEEECCCCcCCCccchhh---hcCCCCCEEECcCCcccc----cCcccccCCCCCCEEECCCCccccc
Q 045861 348 SLPLDIGNLKVVVGIDLSRNNLSDSIPTVI---GGLSNLAFFSLAYNKLQG----SIPESLGDLRSLEFLDLSNNSFSGF 420 (508)
Q Consensus 348 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~~ 420 (508)
.....+..+++|+.|++++|.+.+..+..+ ...+.++.++++++.+++ .+|..+..+++|++|++++|+++..
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i 292 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV 292 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC
T ss_pred chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc
Confidence 433344457777888888887775443332 346778888888888775 4567788899999999999999965
Q ss_pred CcccccCCCCCCEEeCCCCcceecCCC
Q 045861 421 IPRSFEKLLYLEYLNLSFNRLKGEIPS 447 (508)
Q Consensus 421 ~~~~l~~l~~L~~L~l~~n~l~~~~p~ 447 (508)
.+..|..+++|++|++++|++.+.+|.
T Consensus 293 ~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 293 PDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 555568999999999999999876663
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=7.4e-27 Score=233.12 Aligned_cols=228 Identities=21% Similarity=0.176 Sum_probs=117.4
Q ss_pred CCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEE
Q 045861 188 RNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLY 267 (508)
Q Consensus 188 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 267 (508)
++++.|++++|.+++..+..+..++ +|++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 3455555555555544444444443 555555555555544445555555555555555555544444455555555555
Q ss_pred ccCCcCccccchhhhCCCCCcEEEeeCc-eeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccc
Q 045861 268 LYKNKLEGSIPDSLCNLGRLVELQFYDN-KLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLN 346 (508)
Q Consensus 268 l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~ 346 (508)
+++|.+....+..|..+++|++|++++| .+....+..+..+++|++|++++|.+... ..+..+++|++|++++|.++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCc
Confidence 5555555444444555555555555553 23323333445555555555555555433 12444555555555555555
Q ss_pred cccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCccc
Q 045861 347 GSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFS 418 (508)
Q Consensus 347 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~ 418 (508)
+..+..+..+++|+.|++++|++.+..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|.+.
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 444555555555555555555555444555555555555555555555444444455555555555555543
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=7.7e-27 Score=232.17 Aligned_cols=231 Identities=21% Similarity=0.207 Sum_probs=117.8
Q ss_pred CCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEc
Q 045861 237 INLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLL 316 (508)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l 316 (508)
++++.|++++|.+....+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.++...+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 34555555555555444445555555555555555555444445555555555555555554444444555555555555
Q ss_pred CCCcccccCCccccCccCCcEEEccCC-ccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccc
Q 045861 317 HSNVLTYVIPSTFLSLRDILVFNFSSN-SLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQG 395 (508)
Q Consensus 317 ~~n~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 395 (508)
++|.+....+..|..+++|++|++++| .+....+..+..+++|++|++++|.++ .+| .+..+++|++|++++|.+++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence 555555554445555555555555553 233222334455555555555555555 222 24445555555555555554
Q ss_pred cCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc-cccCCCCcccccCCCCCCCCC
Q 045861 396 SIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 396 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~l~l~~n~~~c~~~ 469 (508)
..+..|..+++|+.|++++|++++..+..|.++++|++|++++|++++..+.. ..+.+|+.+++++|||.|+|.
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 44555555555555555555555555555555555555555555555222221 234445555555555555554
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=3.3e-27 Score=224.76 Aligned_cols=224 Identities=20% Similarity=0.260 Sum_probs=151.0
Q ss_pred ccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEee
Q 045861 214 SLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFY 293 (508)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 293 (508)
.++.|+++++.+. .+|..+..+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..+..+++|++|+++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 5556666665555 44555556666666666666666 55666666666666666666666 556666666666666666
Q ss_pred CceeeeeCCcccC---------CCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEEC
Q 045861 294 DNKLFGSIPACIG---------KLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDL 364 (508)
Q Consensus 294 ~n~~~~~~~~~~~---------~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 364 (508)
+|.+.+.+|..+. .+++|++|++++|.++ ..+..+..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEEC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEEC
Confidence 6655555555443 3677777777777766 44455666777777777777776 34555667777777777
Q ss_pred CCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcce
Q 045861 365 SRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 365 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|+.+..+++|+.+++..+.+.
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 777777677777777777777777777777677777777777777777777777777777777777777777766554
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=4.8e-27 Score=219.74 Aligned_cols=234 Identities=22% Similarity=0.233 Sum_probs=164.8
Q ss_pred ccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCc-CccccchhhhCCCCCcEEEe
Q 045861 214 SLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNK-LEGSIPDSLCNLGRLVELQF 292 (508)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L 292 (508)
++++|+++++.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|. +....+..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 45555555555554444556666677777777777666556667777777777777775 55555666777777777777
Q ss_pred eCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCc
Q 045861 293 YDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDS 372 (508)
Q Consensus 293 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 372 (508)
++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 77777666666677777788888887777776666677778888888888887766666677788888888888888877
Q ss_pred cchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc
Q 045861 373 IPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 373 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 448 (508)
.+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+.. .....++.+..+.+.+.+..|..
T Consensus 193 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 7777888888888888888888666667788888888888888877532211 01122444556677777777765
No 62
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=1.2e-29 Score=263.05 Aligned_cols=427 Identities=13% Similarity=0.113 Sum_probs=262.9
Q ss_pred CCCchhhhhCCCCCcEEecCCCcCCC---CCCc------------CCcCCCCCcEEEcccCCCCCCCCcccC-CCCCCCe
Q 045861 10 GSLPDDMCQHLPRLQALDINNNHVTG---PVPR------------NLWQCQELIAISLSHNQLTGLIPRDIG-NLTSARA 73 (508)
Q Consensus 10 ~~l~~~~~~~~~~L~~L~l~~~~~~~---~~~~------------~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~ 73 (508)
+..|..++.++++|++|+++++.... ..|. .+..+++|++|++++|.+++..+..+. .+++|++
T Consensus 55 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~ 134 (594)
T 2p1m_B 55 AVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKV 134 (594)
T ss_dssp SSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCE
T ss_pred ccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcE
Confidence 45677778899999999999875321 1111 123678999999999988766555565 6899999
Q ss_pred EEccCC-ccccC-CchhccCCCCCCEeeCccccCCCC----------CCCCCCEEEccCCc--cccc-CCccccCCCCCc
Q 045861 74 LLLGNN-NLIGE-IPHEIGNLHNLEYLVLENNNFDGP----------RHSNLERLYLERNN--FSGT-IPSFIFNASKLS 138 (508)
Q Consensus 74 L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~----------~~~~L~~L~l~~~~--~~~~-~~~~~~~l~~L~ 138 (508)
|++++| .+... ++..+.++++|++|++++|.+++. .+++|++|++++|. +... +...+..+++|+
T Consensus 135 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~ 214 (594)
T 2p1m_B 135 LVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214 (594)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCC
T ss_pred EeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCc
Confidence 999998 44432 444556899999999999986543 46688999988886 2211 112234568899
Q ss_pred EEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCC-CCcccccccCCCCCCEE-EccCccCccCCChhhhhcccccC
Q 045861 139 ILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTS-ELSFLSSLRNCRNLKVI-DLTGNQLHGILPSSMGNLSTSLE 216 (508)
Q Consensus 139 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~l~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~L~ 216 (508)
+|++++|.....++..+..+++|++|+++.+...-... .......+.++++|+.+ .+.+... ..++..+... ++|+
T Consensus 215 ~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~-~~L~ 292 (594)
T 2p1m_B 215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVC-SRLT 292 (594)
T ss_dssp EEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHH-TTCC
T ss_pred EEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhh-CCCC
Confidence 99998883323466777788888888876553210000 00011346677888887 3333221 2233333333 3888
Q ss_pred eeEccCCcCcccC-ChhhhcCCCCcEEEcccCccccc-cCccccCCCCCCcEEccC---------CcCccccchhh-hCC
Q 045861 217 YIYMPYCRRSGRI-PEEIGNLINLITMSLGINKLTGS-IPISLGKLQKLQGLYLYK---------NKLEGSIPDSL-CNL 284 (508)
Q Consensus 217 ~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~---------n~l~~~~~~~~-~~l 284 (508)
+|++++|.+.+.. ...+..+++|++|++++| +... .+.....+++|++|++.+ +.+++.....+ ..+
T Consensus 293 ~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~ 371 (594)
T 2p1m_B 293 TLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC 371 (594)
T ss_dssp EEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHC
T ss_pred EEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhc
Confidence 8888888754322 223457788888888877 3321 222233477888888833 34443222222 347
Q ss_pred CCCcEEEeeCceeeeeCCcccC-CCCCCCEEEcC--C----CcccccC-----CccccCccCCcEEEccCCccccccCcc
Q 045861 285 GRLVELQFYDNKLFGSIPACIG-KLSPLRNLLLH--S----NVLTYVI-----PSTFLSLRDILVFNFSSNSLNGSLPLD 352 (508)
Q Consensus 285 ~~L~~L~L~~n~~~~~~~~~~~-~~~~L~~L~l~--~----n~~~~~~-----~~~~~~~~~L~~L~L~~n~l~~~~~~~ 352 (508)
++|++|.+..+.+++.....+. .+++|+.|+++ + +.++... ...+..+++|++|++++ .++......
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~ 450 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY 450 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence 7888887777776544433333 46788888887 3 3343211 11245567788888866 454433333
Q ss_pred ccC-CCCCcEEECCCCcCCCccchhh-hcCCCCCEEECcCCcccccCcc-cccCCCCCCEEECCCCcccccCcccc-cCC
Q 045861 353 IGN-LKVVVGIDLSRNNLSDSIPTVI-GGLSNLAFFSLAYNKLQGSIPE-SLGDLRSLEFLDLSNNSFSGFIPRSF-EKL 428 (508)
Q Consensus 353 ~~~-l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l-~~l 428 (508)
+.. +++|+.|++++|.+++.....+ .++++|++|++++|.+++.... ....+++|+.|++++|+++......+ ..+
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l 530 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKM 530 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHC
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhC
Confidence 433 6778888888877765555444 5677888888888877644332 33446778888888887754333333 445
Q ss_pred CCCCEEeCCCCc
Q 045861 429 LYLEYLNLSFNR 440 (508)
Q Consensus 429 ~~L~~L~l~~n~ 440 (508)
|.|+...+..+.
T Consensus 531 p~l~i~~~~~~~ 542 (594)
T 2p1m_B 531 PKLNVEVIDERG 542 (594)
T ss_dssp TTEEEEEECSSS
T ss_pred CCCEEEEecCCC
Confidence 666655555544
No 63
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=4.4e-26 Score=216.98 Aligned_cols=227 Identities=18% Similarity=0.197 Sum_probs=157.9
Q ss_pred CCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCC
Q 045861 158 LRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLI 237 (508)
Q Consensus 158 l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 237 (508)
.++++.|++++|.+..++. .+..+++|++|++++|.+. .+|.. +..++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~------~l~~l~~L~~L~L~~n~l~-~lp~~-------------------------~~~l~ 127 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPD------QAFRLSHLQHMTIDAAGLM-ELPDT-------------------------MQQFA 127 (328)
T ss_dssp STTCCEEEEESSCCSSCCS------CGGGGTTCSEEEEESSCCC-CCCSC-------------------------GGGGT
T ss_pred ccceeEEEccCCCchhcCh------hhhhCCCCCEEECCCCCcc-chhHH-------------------------HhccC
Confidence 3556666666665554332 2334555555555555555 34444 44444
Q ss_pred CCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhh---------hCCCCCcEEEeeCceeeeeCCcccCCC
Q 045861 238 NLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSL---------CNLGRLVELQFYDNKLFGSIPACIGKL 308 (508)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~L~~n~~~~~~~~~~~~~ 308 (508)
+|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+. .+|..+..+
T Consensus 128 ~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l 205 (328)
T 4fcg_A 128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL 205 (328)
T ss_dssp TCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGC
T ss_pred CCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCC
Confidence 5555555555444 344445555555555555544444444333 34778888888888776 666777778
Q ss_pred CCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEEC
Q 045861 309 SPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSL 388 (508)
Q Consensus 309 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 388 (508)
++|++|++++|.+.+. +..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus 206 ~~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 206 QNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp TTCCEEEEESSCCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred CCCCEEEccCCCCCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence 8888888888888754 345778888888888888888888888888899999999998888888888889999999999
Q ss_pred cCCcccccCcccccCCCCCCEEECCCCcccc
Q 045861 389 AYNKLQGSIPESLGDLRSLEFLDLSNNSFSG 419 (508)
Q Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 419 (508)
++|.+.+.+|..+..+++|+.+++..+.+..
T Consensus 285 ~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 285 RGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp TTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred CCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 9998888899999999999999988776664
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2e-27 Score=225.05 Aligned_cols=248 Identities=20% Similarity=0.182 Sum_probs=167.7
Q ss_pred ccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCc-ccCChhhh-------cCCCCcEEEcccCccccccCc
Q 045861 184 LRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRS-GRIPEEIG-------NLINLITMSLGINKLTGSIPI 255 (508)
Q Consensus 184 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~ 255 (508)
+...++|+.+++++|.+ ..|..+.. .++.|+++++.+. ..++..+. .+++|++|++++|.+.+..|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 33445677777777777 45555543 3777777777763 34555444 678888888888888877777
Q ss_pred cc--cCCCCCCcEEccCCcCccccchhhhCC-----CCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCccccc--CC
Q 045861 256 SL--GKLQKLQGLYLYKNKLEGSIPDSLCNL-----GRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYV--IP 326 (508)
Q Consensus 256 ~l--~~~~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~ 326 (508)
.+ ..+++|++|++++|.+.+. +..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 65 7788888888888888765 6666665 7888888888888766667777788888888888876543 11
Q ss_pred c--cccCccCCcEEEccCCcccc---ccCccccCCCCCcEEECCCCcCCCccc-hhhhcCCCCCEEECcCCcccccCccc
Q 045861 327 S--TFLSLRDILVFNFSSNSLNG---SLPLDIGNLKVVVGIDLSRNNLSDSIP-TVIGGLSNLAFFSLAYNKLQGSIPES 400 (508)
Q Consensus 327 ~--~~~~~~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~ 400 (508)
. .+..+++|++|++++|++++ .....+..+++|++|++++|++.+..| ..+..+++|++|++++|.++ .+|..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 1 23666777777777777762 112233456677777777777775543 34455677777777777776 55555
Q ss_pred ccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcce
Q 045861 401 LGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 401 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
+. ++|++|++++|++++. |. +..+++|++|++++|+++
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 54 6677777777777754 43 666777777777777765
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.4e-25 Score=208.70 Aligned_cols=208 Identities=24% Similarity=0.321 Sum_probs=125.1
Q ss_pred CCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEcc
Q 045861 262 KLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFS 341 (508)
Q Consensus 262 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 341 (508)
++++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555665555554444455556666666666665555555555666666666666666665555556666666666666
Q ss_pred CCccccccCccccCCCCCcEEECCCCcCCCc-cchhhhcCCCCCEEECcCCcccccCcccccCCCCCC----EEECCCCc
Q 045861 342 SNSLNGSLPLDIGNLKVVVGIDLSRNNLSDS-IPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLE----FLDLSNNS 416 (508)
Q Consensus 342 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~L~~n~ 416 (508)
+|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|++++..+..+..+++|+ .|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 6666655444566666666666666666642 356666666666666666666655555555555555 66677776
Q ss_pred ccccCcccccCCCCCCEEeCCCCcceecCCCc--cccCCCCcccccCCCCCCCCCCC
Q 045861 417 FSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG--ESFANFSDNSFMGNSFLCGSPNL 471 (508)
Q Consensus 417 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~--~~~~~l~~l~l~~n~~~c~~~~~ 471 (508)
+++..+..+.. .+|++|++++|++++ +|.. ..+.+++.+++++||+.|+||.+
T Consensus 189 l~~~~~~~~~~-~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 189 MNFIQPGAFKE-IRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CCEECTTSSCS-CCEEEEECCSSCCSC-CCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred ccccCccccCC-CcccEEECCCCceee-cCHhHhcccccccEEEccCCcccccCCch
Confidence 66554444433 366777777777663 3332 34566666777777777777643
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.6e-26 Score=217.96 Aligned_cols=257 Identities=16% Similarity=0.127 Sum_probs=194.7
Q ss_pred CCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEc
Q 045861 189 NLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYL 268 (508)
Q Consensus 189 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 268 (508)
.++..+++.+.+.......+ ...+++++|++++|.+.+..|..+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLR-QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHH-TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHh-ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 35555666665543333333 334489999999998888777888899999999999998875543 888899999999
Q ss_pred cCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccc
Q 045861 269 YKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGS 348 (508)
Q Consensus 269 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 348 (508)
++|.+++.. ..++|++|++++|.+.+..+. .+++|++|++++|.+....+..+..+++|++|++++|.+++.
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 999887422 347899999999988765443 357899999999998888777888888999999999988876
Q ss_pred cCccc-cCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccC
Q 045861 349 LPLDI-GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEK 427 (508)
Q Consensus 349 ~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~ 427 (508)
.+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|.+++ ++..+..+++|+.|++++|++++ +|..+..
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~ 235 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRF 235 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhc
Confidence 66665 4678899999999988854 32 3348889999999999884 44458888899999999998884 5667888
Q ss_pred CCCCCEEeCCCCcce-ecCCCc-cccCCCCccccc
Q 045861 428 LLYLEYLNLSFNRLK-GEIPSG-ESFANFSDNSFM 460 (508)
Q Consensus 428 l~~L~~L~l~~n~l~-~~~p~~-~~~~~l~~l~l~ 460 (508)
+++|+.|++++|++. +.+|.. ..++.++.+++.
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 889999999999987 444443 234556666666
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=2e-25 Score=208.50 Aligned_cols=207 Identities=26% Similarity=0.257 Sum_probs=135.7
Q ss_pred ccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCc
Q 045861 257 LGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDIL 336 (508)
Q Consensus 257 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 336 (508)
+..++++++++++++.++ .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.++..... ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 344455555555555554 2332221 3556666666665555555566666666666666666554332 4566677
Q ss_pred EEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCc
Q 045861 337 VFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNS 416 (508)
Q Consensus 337 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 416 (508)
+|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 7777777666 555566677777777777777776666667777777777777777776656667777778888888887
Q ss_pred ccccCcccccCCCCCCEEeCCCCcceecCCCc-cccCCCCcccccCCCCCCCCCC
Q 045861 417 FSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFANFSDNSFMGNSFLCGSPN 470 (508)
Q Consensus 417 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~l~l~~n~~~c~~~~ 470 (508)
+++..+..|..+++|++|++++|+++ .+|.. .....++.+.+.+|||.|+|..
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence 77666666777777888888888777 55554 3455677777888888887753
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=5.2e-25 Score=203.96 Aligned_cols=183 Identities=28% Similarity=0.371 Sum_probs=106.6
Q ss_pred CCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECC
Q 045861 286 RLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLS 365 (508)
Q Consensus 286 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 365 (508)
++++|++++|.+.+..+..+..+++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 45555555555544444445555555555555555555544455555556666666665554444455556666666666
Q ss_pred CCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecC
Q 045861 366 RNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEI 445 (508)
Q Consensus 366 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 445 (508)
+|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|++++ +
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~ 196 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-V 196 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-C
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-C
Confidence 666665555555666666666666666664444455666666666666666665555556666666666666666653 3
Q ss_pred CCc--cccCCCCcccccCCCCCCCCC
Q 045861 446 PSG--ESFANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 446 p~~--~~~~~l~~l~l~~n~~~c~~~ 469 (508)
|.. ..+.+|+.+++++|||.|+|+
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CHHHhccccCCCEEEecCCCeeCCCc
Confidence 332 234566666666666667665
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.3e-26 Score=220.04 Aligned_cols=241 Identities=20% Similarity=0.182 Sum_probs=150.1
Q ss_pred cCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCC
Q 045861 185 RNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQ 264 (508)
Q Consensus 185 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 264 (508)
..+++|++|++++|.+++..+..+..++ +|++|++++|.+.+..+ +..+++|++|++++|.+++.. ..++|+
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~ 102 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIE 102 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCT-TCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCC-cCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcC
Confidence 3445667777777766665556665554 67777777766655443 566667777777777665322 236677
Q ss_pred cEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccc-cCccCCcEEEccCC
Q 045861 265 GLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTF-LSLRDILVFNFSSN 343 (508)
Q Consensus 265 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~L~~n 343 (508)
+|++++|.+.+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+ ..+++|++|++++|
T Consensus 103 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp EEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 777777766643322 34566777777776665555566666677777777776666555444 35666777777777
Q ss_pred ccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCccc-ccCc
Q 045861 344 SLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFS-GFIP 422 (508)
Q Consensus 344 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~ 422 (508)
.+++.. ....+++|++|++++|.+++ ++..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+. +..+
T Consensus 180 ~l~~~~--~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~ 255 (317)
T 3o53_A 180 FIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (317)
T ss_dssp CCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred cCcccc--cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHH
Confidence 666432 22236667777777777663 3334666677777777777766 45555666667777777777666 4555
Q ss_pred ccccCCCCCCEEeCCCCc
Q 045861 423 RSFEKLLYLEYLNLSFNR 440 (508)
Q Consensus 423 ~~l~~l~~L~~L~l~~n~ 440 (508)
..+..++.|+.+++++|+
T Consensus 256 ~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 256 DFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp HHHHTCHHHHHHHHHHHH
T ss_pred HHHhccccceEEECCCch
Confidence 666666666666666443
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.1e-28 Score=255.83 Aligned_cols=395 Identities=12% Similarity=0.096 Sum_probs=277.6
Q ss_pred hhhCCCCCcEEecCCCcCCCCCCcCCc-CCCCCcEEEcccC-CCCCC-CCcccCCCCCCCeEEccCCccccCCchhc---
Q 045861 16 MCQHLPRLQALDINNNHVTGPVPRNLW-QCQELIAISLSHN-QLTGL-IPRDIGNLTSARALLLGNNNLIGEIPHEI--- 89 (508)
Q Consensus 16 ~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--- 89 (508)
++..+++|++|+++++.+.+..+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+.+..+..+
T Consensus 100 l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred HHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 446789999999999998765555554 6899999999998 55432 33344579999999999999876554444
Q ss_pred -cCCCCCCEeeCcccc--CCCC-------CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCc-------ccccccC
Q 045861 90 -GNLHNLEYLVLENNN--FDGP-------RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTN-------SFSGTIP 152 (508)
Q Consensus 90 -~~l~~L~~L~L~~n~--~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-------~i~~~~~ 152 (508)
..+++|++|++++|. +... .+++|++|++++|.....++..+..+++|++|++..+ .+. .++
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~ 258 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLS 258 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHH
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHH
Confidence 367899999999987 2211 4699999999998433346777888999999996554 333 344
Q ss_pred hhhcCCCCCCEE-eCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCCh
Q 045861 153 STIANLRNLQWL-DLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPE 231 (508)
Q Consensus 153 ~~~~~l~~L~~L-~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 231 (508)
..+..+++|+.+ .+.+..... ....+..+++|+.|++++|.++......+....++|+.|++.+|.....++.
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~~~------l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~ 332 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVPAY------LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV 332 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCGGG------GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH
T ss_pred HHHhcCCCcccccCCcccchhh------HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHH
Confidence 568899999999 343322111 1123446789999999999876543333333345999999998822222333
Q ss_pred hhhcCCCCcEEEccc---------CccccccCccc-cCCCCCCcEEccCCcCccccchhhh-CCCCCcEEEee--C----
Q 045861 232 EIGNLINLITMSLGI---------NKLTGSIPISL-GKLQKLQGLYLYKNKLEGSIPDSLC-NLGRLVELQFY--D---- 294 (508)
Q Consensus 232 ~l~~l~~L~~L~l~~---------~~~~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~--~---- 294 (508)
....+++|++|++.+ +.++......+ ..+++|++|.+..+.+++.....+. .+++|+.|+++ +
T Consensus 333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 412 (594)
T 2p1m_B 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP 412 (594)
T ss_dssp HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC
T ss_pred HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCc
Confidence 344689999999944 33432222223 3489999999988888765555554 58999999999 3
Q ss_pred ceeee-----eCCcccCCCCCCCEEEcCCCcccccCCccccC-ccCCcEEEccCCccccccCccc-cCCCCCcEEECCCC
Q 045861 295 NKLFG-----SIPACIGKLSPLRNLLLHSNVLTYVIPSTFLS-LRDILVFNFSSNSLNGSLPLDI-GNLKVVVGIDLSRN 367 (508)
Q Consensus 295 n~~~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n 367 (508)
+.++. .++..+..+++|+.|++++ .+++.....+.. +++|++|++++|.+++.....+ ..+++|++|++++|
T Consensus 413 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp CTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESC
T ss_pred ccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCC
Confidence 33331 1122356688999999987 555443334443 7899999999999875544444 66899999999999
Q ss_pred cCCCccch-hhhcCCCCCEEECcCCcccccCcccc-cCCCCCCEEECCCCccc
Q 045861 368 NLSDSIPT-VIGGLSNLAFFSLAYNKLQGSIPESL-GDLRSLEFLDLSNNSFS 418 (508)
Q Consensus 368 ~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~~~ 418 (508)
++++.... ....+++|++|++++|+++......+ ..+++++...+..+...
T Consensus 492 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 492 PFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp SCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred CCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence 99755444 34568999999999999975544444 55678877777665433
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.7e-26 Score=229.25 Aligned_cols=245 Identities=16% Similarity=0.135 Sum_probs=192.1
Q ss_pred ccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEee
Q 045861 214 SLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFY 293 (508)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 293 (508)
+|++|++++|.+.+..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 67777777777776666777888888888888888875544 778888888888888877432 23788899999
Q ss_pred CceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCcccc-CCCCCcEEECCCCcCCCc
Q 045861 294 DNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIG-NLKVVVGIDLSRNNLSDS 372 (508)
Q Consensus 294 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~ 372 (508)
+|.+.+..+. .+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 8888765543 357899999999999988888888899999999999999887777775 789999999999999855
Q ss_pred cchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcce-ecCCCc-cc
Q 045861 373 IPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK-GEIPSG-ES 450 (508)
Q Consensus 373 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~p~~-~~ 450 (508)
+. ...+++|++|++++|.+++. |..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|.. ..
T Consensus 185 -~~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 -KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp -EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred -cc-cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 32 33589999999999999854 4448889999999999999995 5667888999999999999987 344432 23
Q ss_pred cCCCCccccc-------CCCCCCCCCCCC
Q 045861 451 FANFSDNSFM-------GNSFLCGSPNLQ 472 (508)
Q Consensus 451 ~~~l~~l~l~-------~n~~~c~~~~~~ 472 (508)
+..+..+.+. ++++.|+|+...
T Consensus 261 l~~L~~l~~~~~~~~~~~~~~~c~~~~~~ 289 (487)
T 3oja_A 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLG 289 (487)
T ss_dssp CHHHHHHHHHHHHHHTSSSSCCCSSTTCE
T ss_pred CCCCcEEeccccccccCCCcccccCCccc
Confidence 4455556665 889999987543
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.1e-26 Score=220.01 Aligned_cols=243 Identities=21% Similarity=0.238 Sum_probs=204.5
Q ss_pred ccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccc-cccCcccc-------CCCCCCcEEccCCcCccccchhh--hC
Q 045861 214 SLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLT-GSIPISLG-------KLQKLQGLYLYKNKLEGSIPDSL--CN 283 (508)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~l~-------~~~~L~~L~l~~n~l~~~~~~~~--~~ 283 (508)
+++++++.++.+ .+|..+... |+.|++++|.+. ...+..+. ++++|++|++++|.+.+..|..+ ..
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 899999999988 677666554 889999999984 34555554 78999999999999998888765 89
Q ss_pred CCCCcEEEeeCceeeeeCCcccCCC-----CCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccc--cCccc--c
Q 045861 284 LGRLVELQFYDNKLFGSIPACIGKL-----SPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGS--LPLDI--G 354 (508)
Q Consensus 284 l~~L~~L~L~~n~~~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~--~ 354 (508)
+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|++.+. .+..+ .
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 99999999999999866 7766666 9999999999999999889999999999999999998754 23333 7
Q ss_pred CCCCCcEEECCCCcCCCc---cchhhhcCCCCCEEECcCCcccccCc-ccccCCCCCCEEECCCCcccccCcccccCCCC
Q 045861 355 NLKVVVGIDLSRNNLSDS---IPTVIGGLSNLAFFSLAYNKLQGSIP-ESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLY 430 (508)
Q Consensus 355 ~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 430 (508)
.+++|++|++++|++.+. ....+..+++|++|++++|.+++..| ..+..+++|++|++++|+++ .+|..+. ++
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~ 275 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AK 275 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SE
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CC
Confidence 899999999999999832 22445688999999999999997664 55677899999999999999 6666665 89
Q ss_pred CCEEeCCCCcceecCCCccccCCCCcccccCCCCC
Q 045861 431 LEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFL 465 (508)
Q Consensus 431 L~~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n~~~ 465 (508)
|++|++++|++++ +|....+++|+.+++++|++.
T Consensus 276 L~~L~Ls~N~l~~-~p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 276 LSVLDLSYNRLDR-NPSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EEEEECCSSCCCS-CCCTTTSCEEEEEECTTCTTT
T ss_pred ceEEECCCCCCCC-ChhHhhCCCCCEEeccCCCCC
Confidence 9999999999985 477667888999999999764
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.8e-25 Score=224.19 Aligned_cols=221 Identities=23% Similarity=0.223 Sum_probs=193.5
Q ss_pred cCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEE
Q 045861 235 NLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNL 314 (508)
Q Consensus 235 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L 314 (508)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 34589999999999998888899999999999999999986555 8999999999999999975432 3899999
Q ss_pred EcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhh-cCCCCCEEECcCCcc
Q 045861 315 LLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIG-GLSNLAFFSLAYNKL 393 (508)
Q Consensus 315 ~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l 393 (508)
++++|.+.+..+. .+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..|..+. .+++|++|++++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999999877654 457899999999999988888999999999999999999988888776 799999999999999
Q ss_pred cccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc-cccCCCCcccccCCCCCCCCC
Q 045861 394 QGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 394 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~l~l~~n~~~c~~~ 469 (508)
++..+ ...+++|+.|++++|.+++.++ .+..+++|+.|++++|.+++ +|.. ..++++..+++++|++.|+++
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred ccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcch
Confidence 96532 4468999999999999997655 48899999999999999995 5654 457889999999999998874
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=7.3e-24 Score=216.84 Aligned_cols=115 Identities=27% Similarity=0.311 Sum_probs=68.0
Q ss_pred CCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCc
Q 045861 22 RLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLE 101 (508)
Q Consensus 22 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 101 (508)
+++.|+++++.++ .+|..+. ++|++|++++|+++.+ |. .+++|++|++++|++. .+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 5777777777777 5565543 6777777777777743 33 4677777777777766 3443 45666666666
Q ss_pred cccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcC
Q 045861 102 NNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTS 173 (508)
Q Consensus 102 ~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 173 (508)
+|.++ .++. .+++|+.|++++|+++. +|.. +++|++|++++|.+..
T Consensus 110 ~N~l~-------------------~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 110 SNPLT-------------------HLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS 155 (622)
T ss_dssp SCCCC-------------------CCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC
T ss_pred CCcCC-------------------CCCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC
Confidence 66554 2222 34555666666655552 3321 2555555555555544
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.9e-24 Score=201.03 Aligned_cols=211 Identities=20% Similarity=0.190 Sum_probs=178.0
Q ss_pred CCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEc
Q 045861 237 INLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLL 316 (508)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l 316 (508)
+++++|++++|.+++..+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46788888888887666667788888888888888887666667888888999999888888777788888999999999
Q ss_pred CCCcccccCCccccCccCCcEEEccCCccccc-cCccccCCCCCcEEECCCCcCCCccchhhhcCCCCC----EEECcCC
Q 045861 317 HSNVLTYVIPSTFLSLRDILVFNFSSNSLNGS-LPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLA----FFSLAYN 391 (508)
Q Consensus 317 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~----~L~L~~n 391 (508)
++|.+....+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99998887777788899999999999999864 588899999999999999999977777777766666 9999999
Q ss_pred cccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc
Q 045861 392 KLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 392 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 448 (508)
.+++..+..+. ..+|+.|++++|++++..+..+..+++|++|++++|++.+..|..
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 99966555554 458999999999999887778899999999999999999777654
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.2e-23 Score=215.36 Aligned_cols=258 Identities=26% Similarity=0.303 Sum_probs=162.8
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|++++|+++ .+|..++ ++|+.|++++|.++ .+|. .+++|++|++++|+++.+ |. .+++|++|++++|+
T Consensus 45 L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 45 LNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIFSNP 112 (622)
T ss_dssp EECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEECSCC
T ss_pred EEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEECcCCc
Confidence 578999999 9998773 89999999999998 5565 579999999999999854 44 78999999999999
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC--CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCC
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP--RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANL 158 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l 158 (508)
+.+ +|. .+++|++|++++|.++.+ .+++|++|++++|.+++ ++. .+.+|+.|++++|.++. +| ..+
T Consensus 113 l~~-l~~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~ 180 (622)
T 3g06_A 113 LTH-LPA---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLP 180 (622)
T ss_dssp CCC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCC
T ss_pred CCC-CCC---CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccC
Confidence 884 444 678899999999988754 23555666665555542 222 12455555555555552 33 234
Q ss_pred CCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCC
Q 045861 159 RNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLIN 238 (508)
Q Consensus 159 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 238 (508)
++|+.|++++|.+..++.. .++|+.|++++|.++. +|. .+++
T Consensus 181 ~~L~~L~Ls~N~l~~l~~~---------~~~L~~L~L~~N~l~~--------------------------l~~---~~~~ 222 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPTL---------PSELYKLWAYNNRLTS--------------------------LPA---LPSG 222 (622)
T ss_dssp TTCCEEECCSSCCSCCCCC---------CTTCCEEECCSSCCSS--------------------------CCC---CCTT
T ss_pred CCCcEEECCCCCCCCCCCc---------cchhhEEECcCCcccc--------------------------cCC---CCCC
Confidence 5555555555555443221 1345555555554442 221 1245
Q ss_pred CcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCC
Q 045861 239 LITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHS 318 (508)
Q Consensus 239 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~ 318 (508)
|++|++++|.+++ +| ..+++|++|++++|.++ .+|. .+++|+.|++++|.+. .+|..+..+++|+.|++++
T Consensus 223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCS
T ss_pred CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecC
Confidence 6666666665553 23 33455666666666665 2333 4456666666666665 4455566666666666666
Q ss_pred CcccccCCccc
Q 045861 319 NVLTYVIPSTF 329 (508)
Q Consensus 319 n~~~~~~~~~~ 329 (508)
|++.+..+..+
T Consensus 294 N~l~~~~~~~l 304 (622)
T 3g06_A 294 NPLSERTLQAL 304 (622)
T ss_dssp CCCCHHHHHHH
T ss_pred CCCCCcCHHHH
Confidence 66665544433
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=7.7e-24 Score=196.10 Aligned_cols=207 Identities=24% Similarity=0.253 Sum_probs=170.3
Q ss_pred CCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcC
Q 045861 238 NLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLH 317 (508)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 317 (508)
..++++++++.++. +|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 45677777777763 444333 568888888888876666678888888888888888876666667788888888888
Q ss_pred CCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccC
Q 045861 318 SNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSI 397 (508)
Q Consensus 318 ~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 397 (508)
+|.+....+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.++...
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 88888877777888889999999999998777777888999999999999998766667889999999999999999777
Q ss_pred cccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCC
Q 045861 398 PESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447 (508)
Q Consensus 398 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 447 (508)
+..|..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 77788899999999999999987777888999999999999999865553
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.4e-22 Score=189.12 Aligned_cols=206 Identities=24% Similarity=0.212 Sum_probs=166.5
Q ss_pred hhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCC
Q 045861 233 IGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLR 312 (508)
Q Consensus 233 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~ 312 (508)
+..++++++++++++.++ .+|..+. +.++.|++++|.+.+..+..|..+++|++|++++|.+++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 456677888888888877 3444443 6788888888888877777888888888888888888654332 6788899
Q ss_pred EEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCc
Q 045861 313 NLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNK 392 (508)
Q Consensus 313 ~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 392 (508)
+|++++|.+.. .+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 99999988874 45567788899999999999987777788889999999999999987777778889999999999999
Q ss_pred ccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecC
Q 045861 393 LQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEI 445 (508)
Q Consensus 393 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 445 (508)
++...+..|..+++|+.|++++|+++ .+|..+...++|+.+++++|++.+..
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 98666667788899999999999998 56667777788999999999987543
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.8e-23 Score=192.43 Aligned_cols=205 Identities=22% Similarity=0.239 Sum_probs=156.8
Q ss_pred hhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCC
Q 045861 233 IGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLR 312 (508)
Q Consensus 233 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~ 312 (508)
...+++|+.|+++++.+.. ...+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 4567778888888877763 23467778888888888887742 3677788888888888887766666677788888
Q ss_pred EEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCc
Q 045861 313 NLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNK 392 (508)
Q Consensus 313 ~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 392 (508)
+|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 88888888887777777788888888888888876666667778888888888888886666667778888888888888
Q ss_pred ccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc
Q 045861 393 LQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 393 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 448 (508)
+++..+..+..+++|+.|++++|.+.+. +++|+++++..|.+++.+|..
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 8876666777888888888888877642 556788888888888877774
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2.3e-22 Score=186.29 Aligned_cols=201 Identities=21% Similarity=0.281 Sum_probs=164.3
Q ss_pred EEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCc
Q 045861 241 TMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNV 320 (508)
Q Consensus 241 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 320 (508)
.+++..+.+... .....+++|+.|++++|.+.. + ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.
T Consensus 23 ~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 23 KANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQ 96 (272)
T ss_dssp HHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSC
T ss_pred HHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCc
Confidence 344444444422 335667889999999998873 2 3578899999999999988642 467888999999999999
Q ss_pred ccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCccc
Q 045861 321 LTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPES 400 (508)
Q Consensus 321 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 400 (508)
+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..
T Consensus 97 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 176 (272)
T 3rfs_A 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH
Confidence 98888778888999999999999998777777888899999999999998777777888899999999999998777777
Q ss_pred ccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCC
Q 045861 401 LGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447 (508)
Q Consensus 401 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 447 (508)
+..+++|++|++++|++++..+..+..+++|++|++++|++.+.+|.
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 78889999999999999988877888899999999999988866553
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=4.3e-22 Score=180.85 Aligned_cols=195 Identities=15% Similarity=0.174 Sum_probs=84.9
Q ss_pred CCcEEccCCcCccccchhhhCCCCCcEEEeeCce-eeeeCCcccCCCCCCCEEEcCC-CcccccCCccccCccCCcEEEc
Q 045861 263 LQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNK-LFGSIPACIGKLSPLRNLLLHS-NVLTYVIPSTFLSLRDILVFNF 340 (508)
Q Consensus 263 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~L 340 (508)
+++|++++|.+++..+..|..+++|++|++++|. +....+..|..+++|++|++++ |.++...+..|..+++|++|++
T Consensus 33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l 112 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112 (239)
T ss_dssp CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEE
T ss_pred ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeC
Confidence 3344444444333333333344444444444443 3333333344444444444444 4444443344444444444444
Q ss_pred cCCccccccCccccCCCCCc---EEECCCC-cCCCccchhhhcCCCCC-EEECcCCcccccCcccccCCCCCCEEECCCC
Q 045861 341 SSNSLNGSLPLDIGNLKVVV---GIDLSRN-NLSDSIPTVIGGLSNLA-FFSLAYNKLQGSIPESLGDLRSLEFLDLSNN 415 (508)
Q Consensus 341 ~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 415 (508)
++|.+++ +|. +..+++|+ +|++++| .+.+..+..|..+++|+ +|++++|.++...+..|.. ++|+.|++++|
T Consensus 113 ~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n 189 (239)
T 2xwt_C 113 FNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKN 189 (239)
T ss_dssp EEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTC
T ss_pred CCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCC
Confidence 4444442 222 33444444 4555554 44433333444455555 5555555554222222322 44555555555
Q ss_pred c-ccccCcccccCC-CCCCEEeCCCCcceecCCCccccCCCCcccccCC
Q 045861 416 S-FSGFIPRSFEKL-LYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGN 462 (508)
Q Consensus 416 ~-~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n 462 (508)
+ +++..+..|.++ ++|++|++++|+++ .+|.. .+.+++.+.+.++
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK-GLEHLKELIARNT 236 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT-TCTTCSEEECTTC
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccc-cCChh-HhccCceeeccCc
Confidence 2 544444445555 55555555555554 33333 3444555544443
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2e-22 Score=183.05 Aligned_cols=198 Identities=17% Similarity=0.171 Sum_probs=172.5
Q ss_pred CCCcEEEcccCccccccCccccCCCCCCcEEccCCc-CccccchhhhCCCCCcEEEeeC-ceeeeeCCcccCCCCCCCEE
Q 045861 237 INLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNK-LEGSIPDSLCNLGRLVELQFYD-NKLFGSIPACIGKLSPLRNL 314 (508)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~~~~L~~L 314 (508)
+++++|++++|.+++..+..+.++++|++|++++|. ++...+..|..+++|++|++++ |.+.+..+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 489999999999997777789999999999999997 8866667899999999999998 89987777889999999999
Q ss_pred EcCCCcccccCCccccCccCCc---EEEccCC-ccccccCccccCCCCCc-EEECCCCcCCCccchhhhcCCCCCEEECc
Q 045861 315 LLHSNVLTYVIPSTFLSLRDIL---VFNFSSN-SLNGSLPLDIGNLKVVV-GIDLSRNNLSDSIPTVIGGLSNLAFFSLA 389 (508)
Q Consensus 315 ~l~~n~~~~~~~~~~~~~~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 389 (508)
++++|.++... . +..+++|+ +|++++| .+++..+..+..+++|+ +|++++|++....+..|.. ++|++|+++
T Consensus 111 ~l~~n~l~~lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKMFP-D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCSCC-C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcccc-c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 99999998744 3 88888888 9999999 99977777899999999 9999999999544445555 899999999
Q ss_pred CCc-ccccCcccccCC-CCCCEEECCCCcccccCcccccCCCCCCEEeCCCCc
Q 045861 390 YNK-LQGSIPESLGDL-RSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNR 440 (508)
Q Consensus 390 ~n~-l~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 440 (508)
+|+ ++...+..|..+ ++|+.|++++|++++..+. .+++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 995 987777889999 9999999999999965444 57789999999874
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=2.2e-22 Score=190.32 Aligned_cols=201 Identities=19% Similarity=0.128 Sum_probs=123.9
Q ss_pred CCCCcEEEcccCccccccCccc--cCCCCCCcEEccCCcCccccc----hhhhCCCCCcEEEeeCceeeeeCCcccCCCC
Q 045861 236 LINLITMSLGINKLTGSIPISL--GKLQKLQGLYLYKNKLEGSIP----DSLCNLGRLVELQFYDNKLFGSIPACIGKLS 309 (508)
Q Consensus 236 l~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~ 309 (508)
+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4557778888877776666666 777888888888887775433 2334677777777777777666666777777
Q ss_pred CCCEEEcCCCccccc---C-CccccCccCCcEEEccCCccccccCc----cccCCCCCcEEECCCCcCCCccchhhhcC-
Q 045861 310 PLRNLLLHSNVLTYV---I-PSTFLSLRDILVFNFSSNSLNGSLPL----DIGNLKVVVGIDLSRNNLSDSIPTVIGGL- 380 (508)
Q Consensus 310 ~L~~L~l~~n~~~~~---~-~~~~~~~~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l- 380 (508)
+|++|++++|.+.+. . ...+..+++|++|++++|.++. ++. .+..+++|++|++++|++.+..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 777777777765431 1 1223455666666666666652 221 23455666666666666665545444433
Q ss_pred --CCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcce
Q 045861 381 --SNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 381 --~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|+++
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 46666666666666 4444443 5666666666666643 22 455566666666666654
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.3e-21 Score=179.05 Aligned_cols=178 Identities=21% Similarity=0.217 Sum_probs=117.6
Q ss_pred CcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCC
Q 045861 264 QGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSN 343 (508)
Q Consensus 264 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n 343 (508)
++++++++.+. .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 17 ~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 17 KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 34455555444 2332222 35556666666555555555666666666666666666665556666666677777777
Q ss_pred ccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcc
Q 045861 344 SLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPR 423 (508)
Q Consensus 344 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 423 (508)
.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 66655556666777777777777777755555667777777777777777755555677777788888888887776666
Q ss_pred cccCCCCCCEEeCCCCcceec
Q 045861 424 SFEKLLYLEYLNLSFNRLKGE 444 (508)
Q Consensus 424 ~l~~l~~L~~L~l~~n~l~~~ 444 (508)
.+..+++|++|++++|++.+.
T Consensus 174 ~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTCTTCCEEECCSCCBCTT
T ss_pred HHhCCCCCCEEEeeCCceeCC
Confidence 777777888888888877644
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=4.3e-23 Score=197.80 Aligned_cols=251 Identities=21% Similarity=0.208 Sum_probs=135.2
Q ss_pred CCEEEccCccCccCCChhhhhc-ccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccc-cCccccCCCCCCcEE
Q 045861 190 LKVIDLTGNQLHGILPSSMGNL-STSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGS-IPISLGKLQKLQGLY 267 (508)
Q Consensus 190 L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~ 267 (508)
++.++++++.+. +..+... .+.++.+++.++.+.+..+. +..+++|++|++++|.+... .+..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 555666655444 2223322 12566666666655544443 34566666666666665533 455556666666666
Q ss_pred ccCCcCccccchhhhCCCCCcEEEeeCc-eeee-eCCcccCCCCCCCEEEcCCC-ccccc-CCccccCcc-CCcEEEccC
Q 045861 268 LYKNKLEGSIPDSLCNLGRLVELQFYDN-KLFG-SIPACIGKLSPLRNLLLHSN-VLTYV-IPSTFLSLR-DILVFNFSS 342 (508)
Q Consensus 268 l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~-~~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~~~~~~-~L~~L~L~~ 342 (508)
+++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|++|++++| .+++. .+..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 6666666555555666666666666666 3433 13444555666666666666 55543 233345555 666666666
Q ss_pred Cc--cc-cccCccccCCCCCcEEECCCCc-CCCccchhhhcCCCCCEEECcCCc-ccccCcccccCCCCCCEEECCCCcc
Q 045861 343 NS--LN-GSLPLDIGNLKVVVGIDLSRNN-LSDSIPTVIGGLSNLAFFSLAYNK-LQGSIPESLGDLRSLEFLDLSNNSF 417 (508)
Q Consensus 343 n~--l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~~ 417 (508)
|. ++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. ++......+..+++|+.|++++| +
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 62 33 2334445556666666666666 454555555666666666666663 32222224555666666666666 3
Q ss_pred cccCcccccCC-CCCCEEeCCCCcceecCCCc
Q 045861 418 SGFIPRSFEKL-LYLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 418 ~~~~~~~l~~l-~~L~~L~l~~n~l~~~~p~~ 448 (508)
.. +.+..+ ..++.|++++|++++..|..
T Consensus 284 ~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 284 PD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp CT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred CH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 32 122222 22444556666666555543
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2.4e-23 Score=201.32 Aligned_cols=251 Identities=14% Similarity=0.135 Sum_probs=167.4
Q ss_pred EEccCccCccCCChhhhhcccccCeeEccCCcCcccCC----hhhhcCC-CCcEEEcccCccccccCccccCC-----CC
Q 045861 193 IDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIP----EEIGNLI-NLITMSLGINKLTGSIPISLGKL-----QK 262 (508)
Q Consensus 193 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~~-----~~ 262 (508)
+.++.+.+++..|..+. .+.+|++|++++|.+.+..+ ..+..++ +|++|++++|.+....+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 34555555554444333 23256666666666655544 5566666 77788888777776555555443 77
Q ss_pred CCcEEccCCcCccccchh----hhCC-CCCcEEEeeCceeeeeCCcc----cCC-CCCCCEEEcCCCcccccCCc----c
Q 045861 263 LQGLYLYKNKLEGSIPDS----LCNL-GRLVELQFYDNKLFGSIPAC----IGK-LSPLRNLLLHSNVLTYVIPS----T 328 (508)
Q Consensus 263 L~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~~~~~~~~~----~~~-~~~L~~L~l~~n~~~~~~~~----~ 328 (508)
|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+.. +.. .++|++|++++|.+.+.... .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 888888888877555543 3334 78888888888876544433 333 35888888888888754332 2
Q ss_pred ccCcc-CCcEEEccCCccccccCcc----ccCC-CCCcEEECCCCcCCCc----cchhhhc-CCCCCEEECcCCcccccC
Q 045861 329 FLSLR-DILVFNFSSNSLNGSLPLD----IGNL-KVVVGIDLSRNNLSDS----IPTVIGG-LSNLAFFSLAYNKLQGSI 397 (508)
Q Consensus 329 ~~~~~-~L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~L~~n~l~~~~ 397 (508)
+...+ +|++|++++|.+++..+.. +... ++|++|++++|.+.+. ++..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 33444 8888888888887655443 3444 5899999999988863 3445555 458999999999988644
Q ss_pred c----ccccCCCCCCEEECCCCcccccC-------cccccCCCCCCEEeCCCCcceec
Q 045861 398 P----ESLGDLRSLEFLDLSNNSFSGFI-------PRSFEKLLYLEYLNLSFNRLKGE 444 (508)
Q Consensus 398 ~----~~~~~l~~L~~L~L~~n~~~~~~-------~~~l~~l~~L~~L~l~~n~l~~~ 444 (508)
+ ..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|++...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3 44567788999999999855433 33566788899999999998754
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.3e-21 Score=179.09 Aligned_cols=182 Identities=24% Similarity=0.283 Sum_probs=162.0
Q ss_pred CCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEEC
Q 045861 285 GRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDL 364 (508)
Q Consensus 285 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 364 (508)
...++++++++.+. .+|..+. +.++.|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 35788999998876 5555444 68999999999999998889999999999999999999888888999999999999
Q ss_pred CCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceec
Q 045861 365 SRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGE 444 (508)
Q Consensus 365 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 444 (508)
++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99999987778899999999999999999977777789999999999999999988888899999999999999999955
Q ss_pred CCCc-cccCCCCcccccCCCCCCC-CC
Q 045861 445 IPSG-ESFANFSDNSFMGNSFLCG-SP 469 (508)
Q Consensus 445 ~p~~-~~~~~l~~l~l~~n~~~c~-~~ 469 (508)
.+.. ..+.+|+.+++++|+|.|+ |.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCCccc
Confidence 5433 4678899999999999999 54
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.7e-23 Score=204.50 Aligned_cols=188 Identities=23% Similarity=0.227 Sum_probs=118.9
Q ss_pred cCCCCCCcEEccCCcCcc----ccchhhhCCCCCcEEEeeCceeeeeCCcc----cCCC---------CCCCEEEcCCCc
Q 045861 258 GKLQKLQGLYLYKNKLEG----SIPDSLCNLGRLVELQFYDNKLFGSIPAC----IGKL---------SPLRNLLLHSNV 320 (508)
Q Consensus 258 ~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~----~~~~---------~~L~~L~l~~n~ 320 (508)
..+++|++|++++|.+.+ .++..+..+++|++|++++|.++...+.. +..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 456666666666666654 24445566666666666666654322222 2222 677777777777
Q ss_pred cccc-CC---ccccCccCCcEEEccCCcccc-----ccCccccCCCCCcEEECCCCcCC----CccchhhhcCCCCCEEE
Q 045861 321 LTYV-IP---STFLSLRDILVFNFSSNSLNG-----SLPLDIGNLKVVVGIDLSRNNLS----DSIPTVIGGLSNLAFFS 387 (508)
Q Consensus 321 ~~~~-~~---~~~~~~~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~ 387 (508)
+... .+ ..+..+++|++|++++|.++. ..+..+..+++|+.|++++|.++ ..++..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 6522 22 234556677777777777652 23335667777777777777775 34566677777888888
Q ss_pred CcCCccccc----Ccccc--cCCCCCCEEECCCCcccc----cCcccc-cCCCCCCEEeCCCCcceecC
Q 045861 388 LAYNKLQGS----IPESL--GDLRSLEFLDLSNNSFSG----FIPRSF-EKLLYLEYLNLSFNRLKGEI 445 (508)
Q Consensus 388 L~~n~l~~~----~~~~~--~~l~~L~~L~L~~n~~~~----~~~~~l-~~l~~L~~L~l~~n~l~~~~ 445 (508)
+++|.+++. ++..+ +.+++|+.|+|++|.+++ .++..+ .++++|++|++++|++++..
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 888877654 34455 237778888888888776 355555 55778888888888877443
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=4.9e-22 Score=187.87 Aligned_cols=223 Identities=17% Similarity=0.207 Sum_probs=180.3
Q ss_pred CCcEEEcccCccccccC---ccccCCCCCCcEEccCCcCccccchhh--hCCCCCcEEEeeCceeeeeCC----cccCCC
Q 045861 238 NLITMSLGINKLTGSIP---ISLGKLQKLQGLYLYKNKLEGSIPDSL--CNLGRLVELQFYDNKLFGSIP----ACIGKL 308 (508)
Q Consensus 238 ~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~----~~~~~~ 308 (508)
.++.+.+.++.+..... ..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 46666776666542111 112234679999999999998888877 889999999999999876443 334578
Q ss_pred CCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccc--c--CccccCCCCCcEEECCCCcCCCccch----hhhcC
Q 045861 309 SPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGS--L--PLDIGNLKVVVGIDLSRNNLSDSIPT----VIGGL 380 (508)
Q Consensus 309 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l 380 (508)
++|++|++++|.+....+..+..+++|++|++++|++.+. . +..+..+++|++|++++|+++. .+. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence 9999999999999988889999999999999999997642 2 2334788999999999999973 333 35788
Q ss_pred CCCCEEECcCCcccccCcccccCC---CCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccccCCCCcc
Q 045861 381 SNLAFFSLAYNKLQGSIPESLGDL---RSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDN 457 (508)
Q Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~l 457 (508)
++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|+++ .+|....+++|+.+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~-~~~~~~~l~~L~~L 299 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN-RAPQPDELPEVDNL 299 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC-SCCCTTSCCCCSCE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC-CCchhhhCCCccEE
Confidence 999999999999998777777766 69999999999999 5566653 79999999999998 55666678999999
Q ss_pred cccCCCCC
Q 045861 458 SFMGNSFL 465 (508)
Q Consensus 458 ~l~~n~~~ 465 (508)
++++|++.
T Consensus 300 ~L~~N~l~ 307 (310)
T 4glp_A 300 TLDGNPFL 307 (310)
T ss_dssp ECSSTTTS
T ss_pred ECcCCCCC
Confidence 99999864
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=2.2e-23 Score=203.64 Aligned_cols=190 Identities=19% Similarity=0.227 Sum_probs=124.2
Q ss_pred hhcCCCCcEEEcccCcccc----ccCccccCCCCCCcEEccCCcCccccchhh----hCC---------CCCcEEEeeCc
Q 045861 233 IGNLINLITMSLGINKLTG----SIPISLGKLQKLQGLYLYKNKLEGSIPDSL----CNL---------GRLVELQFYDN 295 (508)
Q Consensus 233 l~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~----~~l---------~~L~~L~L~~n 295 (508)
+..+++|++|++++|.+.. .++..+..+++|++|++++|.+++..+..+ ..+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 3445555555555555553 234445555666666666665543222222 222 66666666666
Q ss_pred eee-eeCC---cccCCCCCCCEEEcCCCcccc-----cCCccccCccCCcEEEccCCccc----cccCccccCCCCCcEE
Q 045861 296 KLF-GSIP---ACIGKLSPLRNLLLHSNVLTY-----VIPSTFLSLRDILVFNFSSNSLN----GSLPLDIGNLKVVVGI 362 (508)
Q Consensus 296 ~~~-~~~~---~~~~~~~~L~~L~l~~n~~~~-----~~~~~~~~~~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L 362 (508)
.++ ...+ ..+..+++|++|++++|.+.. ..+..+..+++|++|+|++|.++ ..++..+..+++|+.|
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 654 2222 244556677777777776652 22335667778888888888875 4567777888889999
Q ss_pred ECCCCcCCCc----cchhhhc--CCCCCEEECcCCcccc----cCcccc-cCCCCCCEEECCCCcccccCc
Q 045861 363 DLSRNNLSDS----IPTVIGG--LSNLAFFSLAYNKLQG----SIPESL-GDLRSLEFLDLSNNSFSGFIP 422 (508)
Q Consensus 363 ~l~~n~l~~~----~~~~~~~--l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~L~~n~~~~~~~ 422 (508)
++++|.+++. ++..+.. +++|++|++++|.+++ .++..+ .++++|+.|++++|.+++..+
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 9999988865 4555543 8899999999999986 366666 557899999999999987653
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.6e-21 Score=182.37 Aligned_cols=193 Identities=25% Similarity=0.330 Sum_probs=121.6
Q ss_pred hcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCE
Q 045861 234 GNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRN 313 (508)
Q Consensus 234 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 313 (508)
..+++|++|+++++.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 345566666666666553 22 45556666666666666653322 66666666666666665432 24566666777
Q ss_pred EEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcc
Q 045861 314 LLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKL 393 (508)
Q Consensus 314 L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 393 (508)
|++++|.+.+.. .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 777776666542 26666777777777777664333 5666777777777777764333 66677777777777777
Q ss_pred cccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcce
Q 045861 394 QGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 394 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
++..+ +..+++|+.|++++|++++.. .+..+++|+.|++++|+++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 64322 666777777777777777544 2667777777777777775
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=4.8e-23 Score=199.21 Aligned_cols=251 Identities=16% Similarity=0.117 Sum_probs=195.7
Q ss_pred eeEccCCcCcccCChhhhcCCCCcEEEcccCccccccC----ccccCCC-CCCcEEccCCcCccccchhhhCC-----CC
Q 045861 217 YIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIP----ISLGKLQ-KLQGLYLYKNKLEGSIPDSLCNL-----GR 286 (508)
Q Consensus 217 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~n~l~~~~~~~~~~l-----~~ 286 (508)
+++++++.+.+.+|..+....+|++|++++|.+....+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788888888888877777789999999999987665 6788888 89999999999997777777664 99
Q ss_pred CcEEEeeCceeeeeCCcc----cCCC-CCCCEEEcCCCcccccCCccc----cC-ccCCcEEEccCCccccc----cCcc
Q 045861 287 LVELQFYDNKLFGSIPAC----IGKL-SPLRNLLLHSNVLTYVIPSTF----LS-LRDILVFNFSSNSLNGS----LPLD 352 (508)
Q Consensus 287 L~~L~L~~n~~~~~~~~~----~~~~-~~L~~L~l~~n~~~~~~~~~~----~~-~~~L~~L~L~~n~l~~~----~~~~ 352 (508)
|++|++++|.+++..+.. +..+ ++|++|++++|.+.......+ .. .++|++|++++|.++.. ++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999987655543 4444 899999999999987765443 33 46999999999999853 3334
Q ss_pred ccCCC-CCcEEECCCCcCCCccchhh----hcC-CCCCEEECcCCccccc----CcccccC-CCCCCEEECCCCcccccC
Q 045861 353 IGNLK-VVVGIDLSRNNLSDSIPTVI----GGL-SNLAFFSLAYNKLQGS----IPESLGD-LRSLEFLDLSNNSFSGFI 421 (508)
Q Consensus 353 ~~~l~-~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~L~~n~~~~~~ 421 (508)
+...+ +|++|++++|++++..+..+ ..+ ++|++|++++|.+++. ++..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 45555 99999999999987776544 445 5999999999999863 3445554 459999999999999765
Q ss_pred c----ccccCCCCCCEEeCCCCcceecCC--------CccccCCCCcccccCCCCCCC
Q 045861 422 P----RSFEKLLYLEYLNLSFNRLKGEIP--------SGESFANFSDNSFMGNSFLCG 467 (508)
Q Consensus 422 ~----~~l~~l~~L~~L~l~~n~l~~~~p--------~~~~~~~l~~l~l~~n~~~c~ 467 (508)
+ ..+..+++|+.|++++|.+....+ .......++.+++++|+....
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 5 345677999999999999542111 123456678899999986554
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=8.4e-22 Score=188.78 Aligned_cols=242 Identities=17% Similarity=0.169 Sum_probs=198.7
Q ss_pred ccCeeEccCCcCcccCChhhhcC--CCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccc-cchhhhCCCCCcEE
Q 045861 214 SLEYIYMPYCRRSGRIPEEIGNL--INLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGS-IPDSLCNLGRLVEL 290 (508)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L 290 (508)
.++.++++++.+. +..+..+ ++++.++++++.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 5889999988765 4556666 8999999999999876554 56799999999999998765 77788999999999
Q ss_pred EeeCceeeeeCCcccCCCCCCCEEEcCCC-ccccc-CCccccCccCCcEEEccCC-ccccc-cCccccCCC-CCcEEECC
Q 045861 291 QFYDNKLFGSIPACIGKLSPLRNLLLHSN-VLTYV-IPSTFLSLRDILVFNFSSN-SLNGS-LPLDIGNLK-VVVGIDLS 365 (508)
Q Consensus 291 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~~~~~~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~l~ 365 (508)
++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 99999988777888889999999999999 57653 4555778999999999999 88754 566788899 99999999
Q ss_pred CC--cCC-CccchhhhcCCCCCEEECcCCc-ccccCcccccCCCCCCEEECCCCc-ccccCcccccCCCCCCEEeCCCCc
Q 045861 366 RN--NLS-DSIPTVIGGLSNLAFFSLAYNK-LQGSIPESLGDLRSLEFLDLSNNS-FSGFIPRSFEKLLYLEYLNLSFNR 440 (508)
Q Consensus 366 ~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~n~ 440 (508)
+| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 99 565 4567778899999999999999 777778889999999999999995 43333346888999999999999
Q ss_pred ceecCCCc--ccc-CCCCcccccCCCC
Q 045861 441 LKGEIPSG--ESF-ANFSDNSFMGNSF 464 (508)
Q Consensus 441 l~~~~p~~--~~~-~~l~~l~l~~n~~ 464 (508)
++.. ..+ ..+..+++++|..
T Consensus 283 ----i~~~~~~~l~~~l~~L~l~~n~l 305 (336)
T 2ast_B 283 ----VPDGTLQLLKEALPHLQINCSHF 305 (336)
T ss_dssp ----SCTTCHHHHHHHSTTSEESCCCS
T ss_pred ----cCHHHHHHHHhhCcceEEecccC
Confidence 3443 223 3477788877754
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=6.3e-21 Score=179.79 Aligned_cols=195 Identities=21% Similarity=0.329 Sum_probs=168.3
Q ss_pred ccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCc
Q 045861 257 LGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDIL 336 (508)
Q Consensus 257 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 336 (508)
...+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 4567899999999999984 44 68899999999999999875444 89999999999999999875 3688999999
Q ss_pred EEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCc
Q 045861 337 VFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNS 416 (508)
Q Consensus 337 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 416 (508)
+|++++|.+++. + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. +. +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCc
Confidence 999999999854 3 38899999999999999996544 88999999999999999854 33 8899999999999999
Q ss_pred ccccCcccccCCCCCCEEeCCCCcceecCCCccccCCCCcccccCCCCCC
Q 045861 417 FSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLC 466 (508)
Q Consensus 417 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n~~~c 466 (508)
+++..+ +..+++|++|++++|++.+ ++....+++|+.+++++|++.+
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCB-CGGGTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCc-cccccCCCCCCEEEccCCeeec
Confidence 996544 8899999999999999984 5556678899999999998754
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.4e-20 Score=180.87 Aligned_cols=198 Identities=15% Similarity=0.108 Sum_probs=87.7
Q ss_pred EEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccC-ccccCCCCCCc-EEcc
Q 045861 192 VIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIP-ISLGKLQKLQG-LYLY 269 (508)
Q Consensus 192 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~-L~l~ 269 (508)
+++.+++.++ .+|..+ ++++++|++++|.+....+..|.++++|++|++++|.+.+.++ .+|.+++++.+ +.+.
T Consensus 13 ~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 4555555555 233322 2355555555555554444445555555555555555433222 23444444443 2333
Q ss_pred CCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCC-CcccccCCccccCcc-CCcEEEccCCcccc
Q 045861 270 KNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHS-NVLTYVIPSTFLSLR-DILVFNFSSNSLNG 347 (508)
Q Consensus 270 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~-~L~~L~L~~n~l~~ 347 (508)
.|.+....+..|..+++|++|++++|.+....+..+....++..+++.+ +.+.......|..+. .+++|++++|+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 3444444444455555555555555554433333333444444444433 334433333343332 34445555555542
Q ss_pred ccCccccCCCCCcEEECCC-CcCCCccchhhhcCCCCCEEECcCCccc
Q 045861 348 SLPLDIGNLKVVVGIDLSR-NNLSDSIPTVIGGLSNLAFFSLAYNKLQ 394 (508)
Q Consensus 348 ~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 394 (508)
. +.......+|+++++.+ |.++...+++|.++++|++|++++|+++
T Consensus 169 i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 169 I-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp E-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred C-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 2 22222233444444442 3333222233444445555555555444
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=6.2e-20 Score=163.91 Aligned_cols=152 Identities=19% Similarity=0.316 Sum_probs=84.2
Q ss_pred cEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCC
Q 045861 288 VELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRN 367 (508)
Q Consensus 288 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 367 (508)
+.++++++.++ .+|..+. ++++.|++++|.+....+..|..+++|++|+|++|++++..+..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45555555543 2333222 45666666666666555555555566666666666665555555555555555555555
Q ss_pred cCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcce
Q 045861 368 NLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 368 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
+++...+..|.++++|++|++++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 555444444555555555555555555554555555555555555555555555455555555555555555554
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=7.6e-20 Score=162.20 Aligned_cols=174 Identities=21% Similarity=0.224 Sum_probs=91.6
Q ss_pred eecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCcc
Q 045861 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNL 81 (508)
Q Consensus 2 ~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (508)
++++++++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++
T Consensus 13 ~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 13 ECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp ECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 34455555 445433 34555666666555544444455555566666665555544444455555555555555555
Q ss_pred ccCCchhccCCCCCCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCC
Q 045861 82 IGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNL 161 (508)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L 161 (508)
.+..+..|.++++|++|++++|.+. +..+..+..+++|++|++++|.+++..+..|..+++|
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQ------------------SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred CccCHhHhcCccCCCEEEcCCCcCc------------------ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence 5443444555555555555555443 1223334555666666666666654444445556666
Q ss_pred CEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhh
Q 045861 162 QWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMG 209 (508)
Q Consensus 162 ~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 209 (508)
++|++++|.+.+ .++.|+.|+++.+.+++.+|..++
T Consensus 151 ~~L~l~~N~~~~------------~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 151 QYIWLHDNPWDC------------TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp CEEECCSCCBCC------------CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred cEEEecCCCeec------------CCCCHHHHHHHHHhCCceeeccCc
Confidence 666666654432 234455555555555555554443
No 98
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=4.8e-20 Score=177.92 Aligned_cols=176 Identities=23% Similarity=0.256 Sum_probs=95.5
Q ss_pred CcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccC-CCCCCCEEEcCCCcccccCCccccCccCCcEEEccC
Q 045861 264 QGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIG-KLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSS 342 (508)
Q Consensus 264 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 342 (508)
+.++++++.+. .+|..+. +.++.|++++|.+++..+..+. .+++|+.|++++|.+....+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45666666665 3343322 2456666666666655555554 566666666666666655555566666666666666
Q ss_pred CccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccc---cCCCCCCEEECCCCcccc
Q 045861 343 NSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESL---GDLRSLEFLDLSNNSFSG 419 (508)
Q Consensus 343 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~~~~ 419 (508)
|+++...+..+..+++|+.|++++|++.+..+..|..+++|+.|+|++|.++...+..| ..+++|+.|+|++|++++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 66654444455555555555555555554445555555555555555555553322333 335555555555555554
Q ss_pred cCcccccCCCC--CCEEeCCCCcce
Q 045861 420 FIPRSFEKLLY--LEYLNLSFNRLK 442 (508)
Q Consensus 420 ~~~~~l~~l~~--L~~L~l~~n~l~ 442 (508)
..+..+..++. ++.|++++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 44444444444 244555555554
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=8.9e-20 Score=162.87 Aligned_cols=156 Identities=22% Similarity=0.252 Sum_probs=104.7
Q ss_pred CEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCC
Q 045861 312 RNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYN 391 (508)
Q Consensus 312 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 391 (508)
+.++++++.++.+... + .+++++|++++|.+++..+..+..+++|+.|++++|++.+..+..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~-l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSS-C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCc-c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 4566666666644332 1 256777777777777656666777777777777777777666667777777777777777
Q ss_pred cccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc-cccCCCCcccccCCCCCCCCCC
Q 045861 392 KLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFANFSDNSFMGNSFLCGSPN 470 (508)
Q Consensus 392 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~l~l~~n~~~c~~~~ 470 (508)
.++...+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+.. ..+.+++.+++++|||.|+|++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 777554555667777777777777777666677777777777777777776443332 3456677777777777777764
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=9.3e-20 Score=162.76 Aligned_cols=157 Identities=25% Similarity=0.269 Sum_probs=111.5
Q ss_pred cEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCC-ccccCccCCcEEEccCCccccccCccccCCCCCcEEECCC
Q 045861 288 VELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIP-STFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSR 366 (508)
Q Consensus 288 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 366 (508)
+.+++++|.++ .+|..+ .+.+++|++++|.+....+ ..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 35555555554 233322 2345667777776666533 4466777777777777777766666777777788888888
Q ss_pred CcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCC
Q 045861 367 NNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIP 446 (508)
Q Consensus 367 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 446 (508)
|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|++++|++.+..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 88877667777778888888888888887777778888888888888888887777788888888888888888775544
Q ss_pred C
Q 045861 447 S 447 (508)
Q Consensus 447 ~ 447 (508)
.
T Consensus 171 l 171 (220)
T 2v70_A 171 L 171 (220)
T ss_dssp G
T ss_pred h
Confidence 3
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=160.77 Aligned_cols=157 Identities=18% Similarity=0.190 Sum_probs=138.6
Q ss_pred CEEEcCCCcccccCCccccCccCCcEEEccCCccccccC-ccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcC
Q 045861 312 RNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLP-LDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAY 390 (508)
Q Consensus 312 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 390 (508)
+.+++++|.++.+.. .+ ...+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~-~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCcc-CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 589999999986543 22 3467899999999997644 4588999999999999999987777899999999999999
Q ss_pred CcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc-cccCCCCcccccCCCCCCCCC
Q 045861 391 NKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 391 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~l~l~~n~~~c~~~ 469 (508)
|.+++..+..|..+++|++|++++|++++..|..|..+++|++|++++|++++..|.. ..+.+|+.+++++|||.|+|+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9999888888999999999999999999988999999999999999999999766654 457889999999999999998
Q ss_pred CC
Q 045861 470 NL 471 (508)
Q Consensus 470 ~~ 471 (508)
..
T Consensus 171 l~ 172 (220)
T 2v70_A 171 LA 172 (220)
T ss_dssp GH
T ss_pred hH
Confidence 53
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=2.5e-19 Score=158.90 Aligned_cols=156 Identities=22% Similarity=0.247 Sum_probs=95.4
Q ss_pred CCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECC
Q 045861 286 RLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLS 365 (508)
Q Consensus 286 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 365 (508)
++++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 45555555555544344444555555555555555555544455556666666666666664444455666666666666
Q ss_pred CCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecC
Q 045861 366 RNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEI 445 (508)
Q Consensus 366 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 445 (508)
+|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+++|++|+++.|.+++.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence 666665555556667777777777777765555556667777777777776553 2456777777777777777
Q ss_pred CCc
Q 045861 446 PSG 448 (508)
Q Consensus 446 p~~ 448 (508)
|..
T Consensus 182 p~~ 184 (208)
T 2o6s_A 182 RNS 184 (208)
T ss_dssp BCT
T ss_pred ecc
Confidence 654
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=7.2e-19 Score=168.97 Aligned_cols=241 Identities=21% Similarity=0.114 Sum_probs=158.8
Q ss_pred CEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCC-hhhhcCCCCc
Q 045861 162 QWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIP-EEIGNLINLI 240 (508)
Q Consensus 162 ~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~ 240 (508)
++++.+++.++.+|.+++ +++++|++++|.++...+..|..++ +|++|++++|.+.+.++ ..|.+++++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--------~~l~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--------RNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLH 82 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--------TTCSEEEEESCCCSEECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred CEEEecCCCCCccCcCcC--------CCCCEEEccCCcCCCcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhh
Confidence 566777777776665432 4677888888877766556666665 78888888887765444 4566777766
Q ss_pred E-EEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCc-eeeeeCCcccCCCC-CCCEEEcC
Q 045861 241 T-MSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDN-KLFGSIPACIGKLS-PLRNLLLH 317 (508)
Q Consensus 241 ~-L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~~~~~~~~~~~-~L~~L~l~ 317 (508)
. +.+..|.+....+..+..+++|++|++++|.+....+..+....++..+++.++ .+....+..|..++ .++.|+++
T Consensus 83 ~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 83 EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162 (350)
T ss_dssp EEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred hhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence 4 445567777666777777888888888888777655556666667777777653 55545555555553 57778888
Q ss_pred CCcccccCCccccCccCCcEEEccC-CccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCccccc
Q 045861 318 SNVLTYVIPSTFLSLRDILVFNFSS-NSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGS 396 (508)
Q Consensus 318 ~n~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 396 (508)
+|.++.+.+..|. ..+|+++++.+ |.++...+..|..+++|++|++++|+++...+. .+.+|+.|.+.++.-...
T Consensus 163 ~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~~~l~~ 238 (350)
T 4ay9_X 163 KNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRARSTYNLKK 238 (350)
T ss_dssp SSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTCTTCCC
T ss_pred cccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhhhccCCCcCc
Confidence 8887766555553 45677777764 556644445677778888888888887743332 345666666655543335
Q ss_pred CcccccCCCCCCEEECCCCc
Q 045861 397 IPESLGDLRSLEFLDLSNNS 416 (508)
Q Consensus 397 ~~~~~~~l~~L~~L~L~~n~ 416 (508)
+|. +..+++|+.++++++.
T Consensus 239 lP~-l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 239 LPT-LEKLVALMEASLTYPS 257 (350)
T ss_dssp CCC-TTTCCSCCEEECSCHH
T ss_pred CCC-chhCcChhhCcCCCCc
Confidence 553 6677778888877654
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.2e-18 Score=156.70 Aligned_cols=156 Identities=25% Similarity=0.270 Sum_probs=100.2
Q ss_pred CcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCC
Q 045861 287 LVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSR 366 (508)
Q Consensus 287 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 366 (508)
-+.++.+++.+. .+|..+ .++|++|++++|.+....+..|..+++|++|+|++|.++...+..+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 355666666554 333322 26677777777777766666666677777777777777655555566666777777777
Q ss_pred CcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCC
Q 045861 367 NNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIP 446 (508)
Q Consensus 367 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 446 (508)
|++++..+..|..+++|++|++++|.++ .+|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 7766555555666667777777777666 556666666667777777776665555566666666666666666664443
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.8e-18 Score=155.54 Aligned_cols=152 Identities=24% Similarity=0.249 Sum_probs=77.6
Q ss_pred CcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCcc
Q 045861 23 LQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLEN 102 (508)
Q Consensus 23 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 102 (508)
-+.++.+++.+. .+|..+ .++|++|++++|++++..|..|.++++|++|++++|++....+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 345555555555 344333 25566666666666655555566666666666666665544344455566666655555
Q ss_pred ccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccc
Q 045861 103 NNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLS 182 (508)
Q Consensus 103 n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 182 (508)
|.++. ..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+..++. .
T Consensus 98 N~l~~------------------l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~-----~ 153 (229)
T 3e6j_A 98 NQLTV------------------LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH-----G 153 (229)
T ss_dssp SCCCC------------------CCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT-----T
T ss_pred CcCCc------------------cChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH-----H
Confidence 55542 11223344455555555555554 344444455555555555555444332 2
Q ss_pred cccCCCCCCEEEccCccCc
Q 045861 183 SLRNCRNLKVIDLTGNQLH 201 (508)
Q Consensus 183 ~l~~~~~L~~L~l~~~~~~ 201 (508)
.+..+++|+.|++++|.+.
T Consensus 154 ~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTCTTCCEEECTTSCBC
T ss_pred HHhCCCCCCEEEeeCCCcc
Confidence 2444455555555555444
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=9.9e-19 Score=168.71 Aligned_cols=176 Identities=24% Similarity=0.169 Sum_probs=111.5
Q ss_pred cEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhh-CCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCC
Q 045861 240 ITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLC-NLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHS 318 (508)
Q Consensus 240 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~ 318 (508)
+.++++++.+.. +|..+. +.++.|++++|.+++..+..|. .+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 456666666653 443332 3466677777776655555555 667777777777776666666666677777777777
Q ss_pred CcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhh---hcCCCCCEEECcCCcccc
Q 045861 319 NVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVI---GGLSNLAFFSLAYNKLQG 395 (508)
Q Consensus 319 n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~ 395 (508)
|.+....+..|..+++|++|+|++|.++...+..+..+++|+.|++++|.+.+..+..| ..+++|+.|+|++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 77766666666667777777777777766666666667777777777777765444444 456677777777777764
Q ss_pred cCcccccCCCC--CCEEECCCCccc
Q 045861 396 SIPESLGDLRS--LEFLDLSNNSFS 418 (508)
Q Consensus 396 ~~~~~~~~l~~--L~~L~L~~n~~~ 418 (508)
..+..+..++. ++.|++++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 44455555554 366777777665
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.5e-18 Score=161.92 Aligned_cols=171 Identities=25% Similarity=0.325 Sum_probs=88.9
Q ss_pred hcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCE
Q 045861 234 GNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRN 313 (508)
Q Consensus 234 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 313 (508)
..+++|+.|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l---------------- 102 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV---------------- 102 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC----------------
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC----------------
Confidence 3455555666655555432 2 24455555555555555553222 44555555555555544
Q ss_pred EEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcc
Q 045861 314 LLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKL 393 (508)
Q Consensus 314 L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 393 (508)
... ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+
T Consensus 103 --------~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 103 --------KDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp --------CCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred --------CCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence 332 1244445555555555555432 2344555555555555555532 3455566666666666666
Q ss_pred cccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcce
Q 045861 394 QGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 394 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
++..+ +..+++|+.|++++|.+++. + .+..+++|+.|++++|++.
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred ccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 53322 55566666666666666543 2 3555666666666666654
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=2.6e-18 Score=173.70 Aligned_cols=182 Identities=23% Similarity=0.257 Sum_probs=120.3
Q ss_pred CCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcC
Q 045861 238 NLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLH 317 (508)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 317 (508)
+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 66777777776664 44433 256777777777776 444 345677777777777664 444 433 77777777
Q ss_pred CCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccC
Q 045861 318 SNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSI 397 (508)
Q Consensus 318 ~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 397 (508)
+|.++++.. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+
T Consensus 129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 777776333 56777777777777774 443 45677777777777775 454 44 77788888887777 55
Q ss_pred cccccCCCCC-------CEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCC
Q 045861 398 PESLGDLRSL-------EFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447 (508)
Q Consensus 398 ~~~~~~l~~L-------~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 447 (508)
|. +.. +| +.|++++|+++ .+|..+..+++|+.|++++|++++.+|.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 55 443 56 77888888877 4566666677888888888887766554
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.1e-18 Score=161.01 Aligned_cols=168 Identities=27% Similarity=0.385 Sum_probs=110.9
Q ss_pred ccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEee
Q 045861 214 SLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFY 293 (508)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 293 (508)
+++.|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ + ..+..+++|++|+++
T Consensus 47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECT
T ss_pred cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECC
Confidence 899999999988754 3 48889999999999999986544 8999999999999999985 3 347778888888888
Q ss_pred CceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCcc
Q 045861 294 DNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSI 373 (508)
Q Consensus 294 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 373 (508)
+|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|++| ++++|++.+..
T Consensus 121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L------------------------~L~~N~l~~~~ 172 (291)
T 1h6t_A 121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL------------------------SLEDNQISDIV 172 (291)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEE------------------------ECCSSCCCCCG
T ss_pred CCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEE------------------------EccCCccccch
Confidence 8877542 3455566666666666665543 334444444444 44444444332
Q ss_pred chhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccc
Q 045861 374 PTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSG 419 (508)
Q Consensus 374 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 419 (508)
+ +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++..
T Consensus 173 ~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 173 P--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp G--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred h--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 2 4445555555555555542 22 24555555555555555543
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=4.4e-18 Score=171.98 Aligned_cols=188 Identities=23% Similarity=0.306 Sum_probs=121.8
Q ss_pred ccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEee
Q 045861 214 SLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFY 293 (508)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 293 (508)
+++.|+++++.+.+ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 44555555554443 33322 245666666666665 334 335666667776666664 444 333 67777777
Q ss_pred CceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCcc
Q 045861 294 DNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSI 373 (508)
Q Consensus 294 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 373 (508)
+|.+++ +|. .+++|+.|++++|.++++.. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 776654 443 46777777777777765332 45677777777777774 444 44 77888888888777 45
Q ss_pred chhhhcCCCC-------CEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCC
Q 045861 374 PTVIGGLSNL-------AFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLL 429 (508)
Q Consensus 374 ~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 429 (508)
|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|++++.+|..+..++
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 54 433 56 89999999988 5777777788999999999999888887776643
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=4.6e-18 Score=149.16 Aligned_cols=150 Identities=17% Similarity=0.223 Sum_probs=88.7
Q ss_pred CCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEEC
Q 045861 285 GRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDL 364 (508)
Q Consensus 285 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 364 (508)
++|++|++++|.+. .++ .+..+++|++|++++|.+... ..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 34444444444443 222 234444455555554433322 24455566666666666666555566666677777777
Q ss_pred CCCcCCCccchhhhcCCCCCEEECcCCc-ccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcce
Q 045861 365 SRNNLSDSIPTVIGGLSNLAFFSLAYNK-LQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 365 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|.+++.. .+..+++|++|++++|++.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 7777766566667777777777777776 54 334 4667777777777777777532 5667777777777777764
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=1.2e-17 Score=145.65 Aligned_cols=155 Identities=24% Similarity=0.268 Sum_probs=98.1
Q ss_pred CEEEcCCCcccccCCccccCccCCcEEEccCCccccccCc-cccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcC
Q 045861 312 RNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPL-DIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAY 390 (508)
Q Consensus 312 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 390 (508)
+.++++++.++.+... + ..++++|++++|.+++..+. .+..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~-~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-I--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSC-C--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccC-C--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 4566666666543322 1 12666677777766644443 366677777777777777766667777777777777777
Q ss_pred CcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccccCCCCcccccCCCCCCCCC
Q 045861 391 NKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 391 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n~~~c~~~ 469 (508)
|++++..+..|..+++|++|++++|++++..|..+..+++|++|++++|++.+..+.......++...+.++...|+-|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 7777666666777777777777777777777777777777777777777777555443222223333444444555544
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.7e-17 Score=145.58 Aligned_cols=154 Identities=18% Similarity=0.223 Sum_probs=104.5
Q ss_pred cCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcE
Q 045861 258 GKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILV 337 (508)
Q Consensus 258 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 337 (508)
..+++|++|++++|.+. .++ .+..+++|++|++++|.+. ....+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34455666666666655 333 4556666666666666442 2235666777777777777777666666777777777
Q ss_pred EEccCCccccccCccccCCCCCcEEECCCCc-CCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCc
Q 045861 338 FNFSSNSLNGSLPLDIGNLKVVVGIDLSRNN-LSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNS 416 (508)
Q Consensus 338 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 416 (508)
|++++|.+++..+..+..+++|++|++++|+ +. .++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 7777777776666777788888888888887 55 344 57788888888888888874 33 57778888888888888
Q ss_pred ccc
Q 045861 417 FSG 419 (508)
Q Consensus 417 ~~~ 419 (508)
+.+
T Consensus 193 i~~ 195 (197)
T 4ezg_A 193 IGG 195 (197)
T ss_dssp ---
T ss_pred cCC
Confidence 763
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=2.7e-17 Score=168.11 Aligned_cols=173 Identities=22% Similarity=0.340 Sum_probs=92.9
Q ss_pred hhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCC
Q 045861 233 IGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLR 312 (508)
Q Consensus 233 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~ 312 (508)
+..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+ + ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCC
Confidence 34566666666666666532 2 45666666666666666664332 5666666666666666542 2 2455556666
Q ss_pred EEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCc
Q 045861 313 NLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNK 392 (508)
Q Consensus 313 ~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 392 (508)
.|++++|.+... ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 666666655543 2344555555555555555532 344455555555555555554333 4455555555555555
Q ss_pred ccccCcccccCCCCCCEEECCCCcccc
Q 045861 393 LQGSIPESLGDLRSLEFLDLSNNSFSG 419 (508)
Q Consensus 393 l~~~~~~~~~~l~~L~~L~L~~n~~~~ 419 (508)
+++. ..+..+++|+.|+|++|.+..
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcC
Confidence 5432 234445555555555555543
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=2.6e-17 Score=168.24 Aligned_cols=171 Identities=23% Similarity=0.338 Sum_probs=86.6
Q ss_pred cCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcE
Q 045861 258 GKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILV 337 (508)
Q Consensus 258 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 337 (508)
..++.|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|++++|.+.... .+..+++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCE
Confidence 344555555555555542 22 34555555555555555543222 445555555555555554321 3445555555
Q ss_pred EEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcc
Q 045861 338 FNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSF 417 (508)
Q Consensus 338 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 417 (508)
|+|++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.+
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 55555555432 2344555555555555555532 344555555555555555553333 45555555555555555
Q ss_pred cccCcccccCCCCCCEEeCCCCcce
Q 045861 418 SGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 418 ~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
++. ..+..+++|+.|++++|++.
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEEE
T ss_pred CCC--hHHccCCCCCEEEccCCcCc
Confidence 532 23455555555555555554
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=4.6e-17 Score=141.94 Aligned_cols=133 Identities=23% Similarity=0.335 Sum_probs=118.9
Q ss_pred cEEEccCCccccccCccccCCCCCcEEECCCCcCCCccch-hhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCC
Q 045861 336 LVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPT-VIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSN 414 (508)
Q Consensus 336 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (508)
++++++++.++ .+|..+. ..+++|++++|.+.+..+. .|..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 78999999997 5666543 3899999999999976654 489999999999999999988899999999999999999
Q ss_pred CcccccCcccccCCCCCCEEeCCCCcceecCCCc-cccCCCCcccccCCCCCCCCCCC
Q 045861 415 NSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFANFSDNSFMGNSFLCGSPNL 471 (508)
Q Consensus 415 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~l~l~~n~~~c~~~~~ 471 (508)
|++++..+..|.++++|++|++++|++++..|.. ..+.+++.+++++|+|.|+|+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 145 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch
Confidence 9999998889999999999999999999887765 45788999999999999999853
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=5.5e-17 Score=141.40 Aligned_cols=128 Identities=25% Similarity=0.404 Sum_probs=70.8
Q ss_pred EEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCc
Q 045861 337 VFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNS 416 (508)
Q Consensus 337 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 416 (508)
.++++++.++ .+|..+ .+++++|++++|.++ .+|..|..+++|++|++++|.+++..+..|.++++|++|++++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4455555554 333322 235555566666555 344555556666666666666655545555566666666666666
Q ss_pred ccccCcccccCCCCCCEEeCCCCcceecCCCc--cccCCCCcccccCCCCCCCCC
Q 045861 417 FSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG--ESFANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 417 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~--~~~~~l~~l~l~~n~~~c~~~ 469 (508)
+++..+.+|..+++|++|++++|+++ .+|.. ..+.+++.+++++|||.|+|.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCeecCCc
Confidence 66555555666666666666666665 33332 234555666666666666665
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=2.8e-17 Score=150.90 Aligned_cols=166 Identities=23% Similarity=0.322 Sum_probs=81.3
Q ss_pred CCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcC
Q 045861 238 NLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLH 317 (508)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 317 (508)
+++.++++++.+.+.. .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3444555555554322 34555566666666665552 22 45555555555555555543222 4555555555555
Q ss_pred CCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccC
Q 045861 318 SNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSI 397 (508)
Q Consensus 318 ~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 397 (508)
+|.+.+.... .. ++|+.|++++|++++. ..+..+++|++|++++|++++.
T Consensus 94 ~N~l~~l~~~--------------------------~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~- 143 (263)
T 1xeu_A 94 RNRLKNLNGI--------------------------PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI- 143 (263)
T ss_dssp SSCCSCCTTC--------------------------CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-
T ss_pred CCccCCcCcc--------------------------cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-
Confidence 5555443221 11 4444455555544431 1244455555555555555432
Q ss_pred cccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcce
Q 045861 398 PESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 398 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
+ .+..+++|+.|++++|++++. ..+..+++|+.|++++|++.
T Consensus 144 ~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 144 V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 2 344455555555555555543 34445555555555555554
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=1.2e-17 Score=158.94 Aligned_cols=288 Identities=12% Similarity=0.084 Sum_probs=136.6
Q ss_pred CCCCcEEecCCCcCCCCCCcCCcC-CCCCcEEEcccCCCC--CCCCcccCCCCCCCeEEccCCccccCCchhccC-----
Q 045861 20 LPRLQALDINNNHVTGPVPRNLWQ-CQELIAISLSHNQLT--GLIPRDIGNLTSARALLLGNNNLIGEIPHEIGN----- 91 (508)
Q Consensus 20 ~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----- 91 (508)
+++++.|.++++--. .--..+.. +++|++|||++|++. ..... .++.++.+.+..+.+ ...+|.+
T Consensus 24 ~~~l~~L~l~g~i~~-~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKLNA-EDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEECH-HHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred hCceeEEEEeccccH-HHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhccccccc
Confidence 345666666653211 10111222 566777777777665 22111 222244555544432 2344555
Q ss_pred ---CCCCCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCC
Q 045861 92 ---LHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSF 168 (508)
Q Consensus 92 ---l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~ 168 (508)
+++|+.+++.+ .++ .....+|.++++|+.|++.+|.+....+.+|..+.++..+....
T Consensus 97 ~~g~~~L~~l~L~~-~i~------------------~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIK------------------NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp EEECTTCCC-CBCT-TCC------------------EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred ccccCCCcEEECCc-ccc------------------chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 66666666655 443 24445677777888888887777766677777666666665544
Q ss_pred CcCcCCCCCCcccccccCCCCCC-EEEccCccCccCCChhhhhc---ccccCeeEccCCcCcccCChhhhcCCCCcEEEc
Q 045861 169 NYLTSSTSELSFLSSLRNCRNLK-VIDLTGNQLHGILPSSMGNL---STSLEYIYMPYCRRSGRIPEEIGNLINLITMSL 244 (508)
Q Consensus 169 n~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 244 (508)
.........+ ....|..+..|+ .+.+.... .++..+... ..+++++.+.+.-....... +.
T Consensus 158 ~~~~~~~~~i-~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~-l~---------- 222 (329)
T 3sb4_A 158 SDAYRFKNRW-EHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKL-IR---------- 222 (329)
T ss_dssp THHHHTSTTT-TTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHH-HH----------
T ss_pred hhhhhccccc-cccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHH-HH----------
Confidence 2210000000 002344555555 34333211 111111111 12333333333211100000 11
Q ss_pred ccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCC-EEEcCCCcccc
Q 045861 245 GINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLR-NLLLHSNVLTY 323 (508)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~-~L~l~~n~~~~ 323 (508)
..+++|+.+++++|.++.....+|.++++|+++++.+| +.......|..+++|+ .+++.+ .++.
T Consensus 223 -------------~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~ 287 (329)
T 3sb4_A 223 -------------DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA 287 (329)
T ss_dssp -------------HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE
T ss_pred -------------HhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE
Confidence 12444555555555444444444555555555555554 4444444555555555 555555 4554
Q ss_pred cCCccccCccCCcEEEccCCccccccCccccCCCCCcEEE
Q 045861 324 VIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGID 363 (508)
Q Consensus 324 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 363 (508)
+.+..|..+++|+.+++.+|.++...+.+|.++++|+.++
T Consensus 288 I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 288 IEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 5555555556666666555555545555555555555554
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=6.9e-17 Score=148.26 Aligned_cols=165 Identities=22% Similarity=0.323 Sum_probs=111.6
Q ss_pred CCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCc
Q 045861 22 RLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLE 101 (508)
Q Consensus 22 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 101 (508)
+++.++++.+.+++. + .+..+++|++|++++|+++.. + .+..+++|++|++++|++.+..+ +.++++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 444555566655532 2 355566666666666666533 2 45566666666666666653322 5666666666666
Q ss_pred cccCCCC---CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCC
Q 045861 102 NNNFDGP---RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSEL 178 (508)
Q Consensus 102 ~n~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 178 (508)
+|.++.. ..++|++|++++|++++ + ..+..+++|++|++++|++++. + .++.+++|++|++++|.+...
T Consensus 94 ~N~l~~l~~~~~~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~---- 165 (263)
T 1xeu_A 94 RNRLKNLNGIPSACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT---- 165 (263)
T ss_dssp SSCCSCCTTCCCSSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC----
T ss_pred CCccCCcCccccCcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch----
Confidence 6665543 22567777777777664 2 4688899999999999999854 3 688899999999999988764
Q ss_pred cccccccCCCCCCEEEccCccCccC
Q 045861 179 SFLSSLRNCRNLKVIDLTGNQLHGI 203 (508)
Q Consensus 179 ~~~~~l~~~~~L~~L~l~~~~~~~~ 203 (508)
..+..+++|+.|++++|.+...
T Consensus 166 ---~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 ---GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ---TTSTTCCCCCEEEEEEEEEECC
T ss_pred ---HHhccCCCCCEEeCCCCcccCC
Confidence 4477889999999999988755
No 121
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.69 E-value=2.2e-15 Score=147.11 Aligned_cols=335 Identities=12% Similarity=0.076 Sum_probs=162.7
Q ss_pred CCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCccccCCCCCCCC
Q 045861 33 VTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSN 112 (508)
Q Consensus 33 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 112 (508)
++.+-..+|.+|.+|+.+.+.. .++.+...+|.++.+|+.+++..+ +..+...+|.++.+|+.+.+..+- ..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l-~~----- 130 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLML-KS----- 130 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTC-CE-----
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCce-ee-----
Confidence 3334455677778888888764 366666677778888888888654 444555677777777776665431 10
Q ss_pred CCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCE
Q 045861 113 LERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKV 192 (508)
Q Consensus 113 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~ 192 (508)
....+|.++..++...... .......+|..+.+|+.+.+..+. ..++. ..|.++.+|+.
T Consensus 131 -------------i~~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~-----~~F~~c~~L~~ 189 (394)
T 4fs7_A 131 -------------IGVEAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHN-----GLFSGCGKLKS 189 (394)
T ss_dssp -------------ECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECT-----TTTTTCTTCCB
T ss_pred -------------ecceeeecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceecc-----ccccCCCCceE
Confidence 1122333332222222111 111233445555666666554332 22221 33555555555
Q ss_pred EEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCc
Q 045861 193 IDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNK 272 (508)
Q Consensus 193 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 272 (508)
+.+..+ +.......+.... .|+.+.+..+ ... ..........|+.+.+....
T Consensus 190 i~l~~~-~~~I~~~~F~~~~-~L~~i~~~~~------------------------~~~--i~~~~~~~~~l~~i~ip~~~ 241 (394)
T 4fs7_A 190 IKLPRN-LKIIRDYCFAECI-LLENMEFPNS------------------------LYY--LGDFALSKTGVKNIIIPDSF 241 (394)
T ss_dssp CCCCTT-CCEECTTTTTTCT-TCCBCCCCTT------------------------CCE--ECTTTTTTCCCCEEEECTTC
T ss_pred EEcCCC-ceEeCchhhcccc-ccceeecCCC------------------------ceE--eehhhcccCCCceEEECCCc
Confidence 555332 2211112222211 2222222211 110 01111122333333333221
Q ss_pred CccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCcc
Q 045861 273 LEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLD 352 (508)
Q Consensus 273 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 352 (508)
.......|..+..++.+.+..+.. ......|..++.++.+......+ ....|..+.+|+.+.+.++ ++.....+
T Consensus 242 -~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~a 315 (394)
T 4fs7_A 242 -TELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEA 315 (394)
T ss_dssp -CEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTT
T ss_pred -eecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceee---ccccccccccccccccccc-cceechhh
Confidence 112223344444444444443321 13333444455555554443322 2234555556666655543 33344445
Q ss_pred ccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCC
Q 045861 353 IGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLE 432 (508)
Q Consensus 353 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 432 (508)
|..+.+|+.+++..+ ++.....+|.+|++|+.+++..+ ++.+...+|.++++|+.+++..+ +. .+..+|.++++|+
T Consensus 316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK 391 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence 666666666666543 44444566777777777777665 55455677777777777777654 22 2345677777766
Q ss_pred EE
Q 045861 433 YL 434 (508)
Q Consensus 433 ~L 434 (508)
++
T Consensus 392 ~I 393 (394)
T 4fs7_A 392 WI 393 (394)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1.9e-19 Score=182.91 Aligned_cols=190 Identities=23% Similarity=0.220 Sum_probs=127.0
Q ss_pred cCCCCcEEEcccCccccccCccccCCCCCCcEEccCCc-------------CccccchhhhCCCCCcEEE-eeCceeeee
Q 045861 235 NLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNK-------------LEGSIPDSLCNLGRLVELQ-FYDNKLFGS 300 (508)
Q Consensus 235 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~~~~~ 300 (508)
.+++|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..+..+..+++|+.|+ ++.|.+
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~--- 422 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL--- 422 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH---
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc---
Confidence 4555666666666655 455556666666666654443 2233444445555555554 333321
Q ss_pred CCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcC
Q 045861 301 IPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGL 380 (508)
Q Consensus 301 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 380 (508)
..|+.+.+.+|.+....+ ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+
T Consensus 423 --------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 423 --------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp --------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred --------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC
Confidence 123333344444443221 247888888888884 554 788888888888888888 677888888
Q ss_pred CCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccC-cccccCCCCCCEEeCCCCcceecCCC
Q 045861 381 SNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFI-PRSFEKLLYLEYLNLSFNRLKGEIPS 447 (508)
Q Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~p~ 447 (508)
++|+.|+|++|.+++ +| .+..+++|+.|+|++|++++.. |..+..+++|+.|++++|++++..|.
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 888888888888884 55 6888888888888888888776 88888888888888888888855443
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=139.33 Aligned_cols=131 Identities=24% Similarity=0.321 Sum_probs=111.5
Q ss_pred CEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCC
Q 045861 312 RNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYN 391 (508)
Q Consensus 312 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 391 (508)
+.++++++.++.+.... .++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 56777777777554322 257888999999888 66788889999999999999999877888999999999999999
Q ss_pred cccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCC
Q 045861 392 KLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIP 446 (508)
Q Consensus 392 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 446 (508)
.++...+..|..+++|+.|+|++|.++...+..|..+++|+.|++++|++.+..+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 9998878889999999999999999998777789999999999999999986444
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=2.6e-16 Score=134.16 Aligned_cols=138 Identities=22% Similarity=0.251 Sum_probs=110.1
Q ss_pred CCCCCEEEcCCCccc-ccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEE
Q 045861 308 LSPLRNLLLHSNVLT-YVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFF 386 (508)
Q Consensus 308 ~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 386 (508)
.++|+.|++++|.+. +..+..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 367777777777776 34455567778888888888888754 667788889999999999887678888889999999
Q ss_pred ECcCCcccccC-cccccCCCCCCEEECCCCcccccCc---ccccCCCCCCEEeCCCCcceecCCCc
Q 045861 387 SLAYNKLQGSI-PESLGDLRSLEFLDLSNNSFSGFIP---RSFEKLLYLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 387 ~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~l~~n~l~~~~p~~ 448 (508)
++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+. .+|.+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 99999998532 2678889999999999999986655 47888999999999999987 56653
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=2.6e-16 Score=149.74 Aligned_cols=250 Identities=14% Similarity=0.072 Sum_probs=141.1
Q ss_pred CCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCc--ccCChhhhcCCCCcEEEcccCccccccCccccC-----
Q 045861 187 CRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRS--GRIPEEIGNLINLITMSLGINKLTGSIPISLGK----- 259 (508)
Q Consensus 187 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~----- 259 (508)
+.+++.|.++++- .......+....++|+.|++++|++. ...+..+ +.+..+.+..+.+ ...+|.+
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---PAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccccc---CHHHhccccccc
Confidence 3457777777641 11111223332336777777777665 2111111 1123333333322 2334455
Q ss_pred ---CCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcc----cccCCccccCc
Q 045861 260 ---LQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVL----TYVIPSTFLSL 332 (508)
Q Consensus 260 ---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~----~~~~~~~~~~~ 332 (508)
+++|+++++.+ .+......+|.++++|+++++.+|.+....+..|..+.++..+....... .......|..+
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 77888888877 66655666777788888888887777666667777766666665554221 11222233333
Q ss_pred cCCc-EEEc-------------------------cCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEE
Q 045861 333 RDIL-VFNF-------------------------SSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFF 386 (508)
Q Consensus 333 ~~L~-~L~L-------------------------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 386 (508)
..|+ .+.+ .++-...........+++|+++++++|+++.....+|.++++|+++
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 3333 2222 2111000000000125677777777777776556667777777777
Q ss_pred ECcCCcccccCcccccCCCCCC-EEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCC
Q 045861 387 SLAYNKLQGSIPESLGDLRSLE-FLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447 (508)
Q Consensus 387 ~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 447 (508)
++.+| ++.+...+|.++++|+ .+++.+ .++...+.+|.+|++|+.+++++|.+. .++.
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~ 314 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGD 314 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECT
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccch
Confidence 77776 6556667777777777 777777 666566677777777777777777776 4444
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=4.6e-16 Score=132.66 Aligned_cols=139 Identities=18% Similarity=0.154 Sum_probs=113.5
Q ss_pred CCCCCcEEecCCCcCC-CCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCE
Q 045861 19 HLPRLQALDINNNHVT-GPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEY 97 (508)
Q Consensus 19 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 97 (508)
..++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++.+..|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3578999999999987 56787788899999999999998866 78889999999999999998667888888899999
Q ss_pred eeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccC---hhhcCCCCCCEEeCCCCcCcCC
Q 045861 98 LVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIP---STIANLRNLQWLDLSFNYLTSS 174 (508)
Q Consensus 98 L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~---~~~~~l~~L~~L~l~~n~~~~~ 174 (508)
|++++|.++.. ..+..+..+++|++|++++|.+++..+ ..+..+++|+.|++.+|.+...
T Consensus 100 L~Ls~N~l~~~-----------------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 100 LNLSGNKLKDI-----------------STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp EECBSSSCCSS-----------------GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred EeccCCccCcc-----------------hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 98888877621 112577888999999999999885554 4788889999999998887765
Q ss_pred CC
Q 045861 175 TS 176 (508)
Q Consensus 175 ~~ 176 (508)
+.
T Consensus 163 ~~ 164 (168)
T 2ell_A 163 PD 164 (168)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=8.7e-15 Score=142.19 Aligned_cols=247 Identities=11% Similarity=0.119 Sum_probs=169.6
Q ss_pred cccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCC
Q 045861 183 SLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQK 262 (508)
Q Consensus 183 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 262 (508)
+|.++ +|+.+.+..+ ++.....+|... +|+.+.+.. .+...-+..|..|.+|+.+++..+.++.....+|. +.+
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~--~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~ 204 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS--TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAG 204 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTTC--CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCC
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCCC--CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecc
Confidence 34443 4666665443 333444444442 566666654 33334445677788888888888777755555555 578
Q ss_pred CCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccC
Q 045861 263 LQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSS 342 (508)
Q Consensus 263 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 342 (508)
|+.+.+..+ +......+|.++++|+.+++.++ +.......|.. .+|+.+.+. +.++.+....|..+++|+.+++.+
T Consensus 205 L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 205 IEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEES
T ss_pred cCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCC
Confidence 888888744 55455667888888888888765 34455556665 788888884 456667777888888888888887
Q ss_pred Cccc-----cccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcc
Q 045861 343 NSLN-----GSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSF 417 (508)
Q Consensus 343 n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 417 (508)
+.+. .....+|.++++|+.+++.+ .+......+|.++++|+.+++..+ ++.+...+|.++ +|+.+++++|..
T Consensus 281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred ccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 7654 35566778888888888884 466566677888888888888655 555667788888 888888888887
Q ss_pred cccCcccccCCC-CCCEEeCCCCcce
Q 045861 418 SGFIPRSFEKLL-YLEYLNLSFNRLK 442 (508)
Q Consensus 418 ~~~~~~~l~~l~-~L~~L~l~~n~l~ 442 (508)
....+..|.+++ .++.|++..+.+.
T Consensus 358 ~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 358 PQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cccccccccCCCCCccEEEeCHHHHH
Confidence 777777777774 6778877776654
No 128
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.65 E-value=1.2e-14 Score=141.94 Aligned_cols=318 Identities=10% Similarity=0.016 Sum_probs=212.5
Q ss_pred CCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCC
Q 045861 57 LTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASK 136 (508)
Q Consensus 57 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 136 (508)
++.+...+|.++.+|+.+.+..+ +..+...+|.++++|+.+++..+ +. .....+|.++.+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~------------------~I~~~aF~~c~~ 118 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK------------------MIGRCTFSGCYA 118 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC------------------EECTTTTTTCTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce------------------Eccchhhccccc
Confidence 34455566777777777777643 55455666777777777776543 22 123345666666
Q ss_pred CcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccC
Q 045861 137 LSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLE 216 (508)
Q Consensus 137 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 216 (508)
|+.+.+..+ +......+|..+..++....... ..+.. .+|.++++|+.+.+..+. .
T Consensus 119 L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~--~~i~~-----~aF~~c~~L~~i~l~~~~-~--------------- 174 (394)
T 4fs7_A 119 LKSILLPLM-LKSIGVEAFKGCDFKEITIPEGV--TVIGD-----EAFATCESLEYVSLPDSM-E--------------- 174 (394)
T ss_dssp CCCCCCCTT-CCEECTTTTTTCCCSEEECCTTC--CEECT-----TTTTTCTTCCEEECCTTC-C---------------
T ss_pred chhhcccCc-eeeecceeeecccccccccCccc--cccch-----hhhcccCCCcEEecCCcc-c---------------
Confidence 666655433 33344445555433222221111 11111 346666666666654321 1
Q ss_pred eeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCce
Q 045861 217 YIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNK 296 (508)
Q Consensus 217 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 296 (508)
......|..+.+|+.+++..+ +......++.++..|+.+.+..+... ....+....+|+.+.+....
T Consensus 175 ----------~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~ 241 (394)
T 4fs7_A 175 ----------TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF 241 (394)
T ss_dssp ----------EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC
T ss_pred ----------eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc
Confidence 112234566777777777654 33345567888889998888776432 23344556789999987653
Q ss_pred eeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchh
Q 045861 297 LFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTV 376 (508)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 376 (508)
.......+..+..++.+.+..+.. ......|..+..++.+......+. ..++..+.+|+.+.+.++ +......+
T Consensus 242 -~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~a 315 (394)
T 4fs7_A 242 -TELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEA 315 (394)
T ss_dssp -CEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTT
T ss_pred -eecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhh
Confidence 335566788899999999987644 467778999999999998876543 456788899999999765 66566778
Q ss_pred hhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCC
Q 045861 377 IGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFN 439 (508)
Q Consensus 377 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 439 (508)
|.++++|+.+++..+ ++.+...+|.++++|+.+++..+ ++.....+|.+|++|+.+++..+
T Consensus 316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 999999999999765 66567789999999999999877 77677789999999999998654
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=6.6e-16 Score=128.79 Aligned_cols=128 Identities=21% Similarity=0.250 Sum_probs=91.7
Q ss_pred CCCCEEEcCCCccc-ccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEE
Q 045861 309 SPLRNLLLHSNVLT-YVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFS 387 (508)
Q Consensus 309 ~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 387 (508)
++|+.|++++|.+. +..+..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666666665 34455556666777777777776644 5567777888888888888766777777788888888
Q ss_pred CcCCccccc-CcccccCCCCCCEEECCCCcccccCc---ccccCCCCCCEEeCCC
Q 045861 388 LAYNKLQGS-IPESLGDLRSLEFLDLSNNSFSGFIP---RSFEKLLYLEYLNLSF 438 (508)
Q Consensus 388 L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~l~~ 438 (508)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888888753 23667778888888888888886655 4677788888887763
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=9.7e-19 Score=177.73 Aligned_cols=217 Identities=19% Similarity=0.123 Sum_probs=142.4
Q ss_pred cCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCC
Q 045861 185 RNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQ 264 (508)
Q Consensus 185 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 264 (508)
..++.|+.|++++|.+. .+|..+..+. +|+.|+++++......+..+ ..+...+..|..++.+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~-~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCK-ELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHH-HHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHH-HHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhcc
Confidence 44556666666666554 4455555554 56665554432111111000 01113334566667777777
Q ss_pred cEE-ccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCC
Q 045861 265 GLY-LYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSN 343 (508)
Q Consensus 265 ~L~-l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n 343 (508)
.|+ ++.+.+. .|..+.+.+|.+....+ ..|+.|++++|.+++. +. +..+++|++|+|++|
T Consensus 413 ~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N 473 (567)
T 1dce_A 413 AVDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHN 473 (567)
T ss_dssp HHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSS
T ss_pred cCcchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCCC-cC-ccccccCcEeecCcc
Confidence 776 5544332 23344444554432111 2477788888887764 33 778888888888888
Q ss_pred ccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccC-cccccCCCCCCEEECCCCcccccCc
Q 045861 344 SLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSI-PESLGDLRSLEFLDLSNNSFSGFIP 422 (508)
Q Consensus 344 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~ 422 (508)
.++ .+|..+..+++|+.|++++|.+++ +| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|++++.++
T Consensus 474 ~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 474 RLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred ccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 888 777888888999999999999885 56 7888999999999999998765 8888899999999999999987655
Q ss_pred cc---ccCCCCCCEEeC
Q 045861 423 RS---FEKLLYLEYLNL 436 (508)
Q Consensus 423 ~~---l~~l~~L~~L~l 436 (508)
.. +..+++|+.|++
T Consensus 551 ~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 551 IQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTHHHHHCTTCSEEEC
T ss_pred HHHHHHHHCcccCccCC
Confidence 32 344788888864
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=1.4e-15 Score=130.75 Aligned_cols=133 Identities=23% Similarity=0.203 Sum_probs=86.6
Q ss_pred CCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcC
Q 045861 311 LRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAY 390 (508)
Q Consensus 311 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 390 (508)
.+.++++++.++..... ..++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 35667777766654322 225677777777777655555566677777777777777655555566677777777777
Q ss_pred CcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCC
Q 045861 391 NKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIP 446 (508)
Q Consensus 391 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 446 (508)
|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++.+.+|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 77765555556666777777777777775555556666777777777777665444
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=1e-15 Score=127.59 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=105.9
Q ss_pred CCCCCcEEecCCCcCC-CCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCE
Q 045861 19 HLPRLQALDINNNHVT-GPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEY 97 (508)
Q Consensus 19 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 97 (508)
..++++.|++++|.+. +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|.+.+.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3578999999999988 67788888999999999999999866 77889999999999999998667888888889999
Q ss_pred eeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccC---hhhcCCCCCCEEeCC
Q 045861 98 LVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIP---STIANLRNLQWLDLS 167 (508)
Q Consensus 98 L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~---~~~~~l~~L~~L~l~ 167 (508)
|++++|.+++. ..+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~-----------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDL-----------------STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSH-----------------HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCCh-----------------HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888877621 123667788888899998888886555 467788888888775
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=3.3e-15 Score=128.47 Aligned_cols=131 Identities=26% Similarity=0.370 Sum_probs=97.6
Q ss_pred CcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCC
Q 045861 335 ILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSN 414 (508)
Q Consensus 335 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (508)
.+.++++++.++ .+|..+ .++|++|++++|++.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467778888777 344332 36788888888888866666677788888888888888766566677788888888888
Q ss_pred CcccccCcccccCCCCCCEEeCCCCcceecCCCc--cccCCCCcccccCCCCCCCCC
Q 045861 415 NSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG--ESFANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 415 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~--~~~~~l~~l~l~~n~~~c~~~ 469 (508)
|++++..+..+..+++|++|++++|+++ .+|.. ..+.+++.+++++|++.|+||
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8888777677778888888888888887 44443 346778888888888888876
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=9.5e-14 Score=134.89 Aligned_cols=249 Identities=10% Similarity=0.086 Sum_probs=141.3
Q ss_pred CccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChh
Q 045861 128 PSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSS 207 (508)
Q Consensus 128 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 207 (508)
..+|.++ +|+.+.+..+ ++.....+|..+ +|+.+.+.. .+..++. .+|.+|.+|+.+++..+.++......
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~-----~aF~~c~~L~~l~l~~n~l~~I~~~a 199 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKE-----DIFYYCYNLKKADLSKTKITKLPAST 199 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECS-----STTTTCTTCCEEECTTSCCSEECTTT
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehH-----HHhhCcccCCeeecCCCcceEechhh
Confidence 3444443 5666666544 444445555553 466666654 3333322 34566666666666655554333333
Q ss_pred hhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCC
Q 045861 208 MGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRL 287 (508)
Q Consensus 208 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 287 (508)
|. +.+|+.+.+..+ +......+|.++++|+.+.+..+ +...-..+|.+ .+|
T Consensus 200 F~--------------------------~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L 250 (401)
T 4fdw_A 200 FV--------------------------YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGI 250 (401)
T ss_dssp TT--------------------------TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCC
T ss_pred Ee--------------------------ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCc
Confidence 32 244445544422 33334445555555666665543 33233344444 456
Q ss_pred cEEEeeCceeeeeCCcccCCCCCCCEEEcCCCccc-----ccCCccccCccCCcEEEccCCccccccCccccCCCCCcEE
Q 045861 288 VELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLT-----YVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGI 362 (508)
Q Consensus 288 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 362 (508)
+.+.+.+ .+.......|..+++|+.+++.++.+. .+....|..|++|+.+++.+ .++.....+|.++.+|+.+
T Consensus 251 ~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 251 TTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQL 328 (401)
T ss_dssp SEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEE
T ss_pred cEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEE
Confidence 6666633 233444555666666666666655443 45556677777777777773 3554556667777777777
Q ss_pred ECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCC-CCCEEECCCCccc
Q 045861 363 DLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLR-SLEFLDLSNNSFS 418 (508)
Q Consensus 363 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~~~ 418 (508)
.+..+ ++.....+|.++ +|+.+++.+|.+.......|.+++ .++.|++..+.+.
T Consensus 329 ~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 329 TIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp EECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 77544 554556667777 788888887777655566676664 6777877776654
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=5.9e-16 Score=162.26 Aligned_cols=219 Identities=21% Similarity=0.212 Sum_probs=110.4
Q ss_pred CCCCcEEecCCCcCCCCCCcCCcCCCCCcEEE-----cccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCC
Q 045861 20 LPRLQALDINNNHVTGPVPRNLWQCQELIAIS-----LSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHN 94 (508)
Q Consensus 20 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~-----L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 94 (508)
-+.++.|++.++.+.. .+..+.....|+.+. ++.|.+. ..++.+..+..|++|+|++|.+. .+|..+.++++
T Consensus 172 ~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 172 TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CCccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 3567778887777763 333332333333322 2223333 44667788888888888888877 66666667788
Q ss_pred CCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCC
Q 045861 95 LEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSS 174 (508)
Q Consensus 95 L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~ 174 (508)
|++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..|+.+++|++|++++|.+..+
T Consensus 249 L~~L~Ls~N~l~-------------------~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~l 308 (727)
T 4b8c_D 249 LTRLYLNGNSLT-------------------ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTL 308 (727)
T ss_dssp CSCCBCTTSCCS-------------------CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCC
T ss_pred CCEEEeeCCcCc-------------------ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCcc
Confidence 888887777766 67788888899999999999988 6788888889999999999988755
Q ss_pred CCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccC-------
Q 045861 175 TSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGIN------- 247 (508)
Q Consensus 175 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~------- 247 (508)
+ ..|..+++|+.|++++|.+++..|..+.........+++.+|.+.+.+|.. |..|+++.|
T Consensus 309 p------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~ 376 (727)
T 4b8c_D 309 P------WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREY 376 (727)
T ss_dssp C------SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------------------
T ss_pred C------hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeeccccccccc
Confidence 4 337788889999999999888888777665434445678888887777653 445555555
Q ss_pred -ccccccCccccCCCCCCcEEccCCcC
Q 045861 248 -KLTGSIPISLGKLQKLQGLYLYKNKL 273 (508)
Q Consensus 248 -~~~~~~~~~l~~~~~L~~L~l~~n~l 273 (508)
.+.+..+..+..+..+....++.|.+
T Consensus 377 ~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 377 DSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp -------------------------CC
T ss_pred CCccccccchhhcccccceeeeecccc
Confidence 22222233334444455555555554
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.58 E-value=5.8e-16 Score=162.34 Aligned_cols=180 Identities=25% Similarity=0.270 Sum_probs=86.7
Q ss_pred cCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCc
Q 045861 253 IPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSL 332 (508)
Q Consensus 253 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 332 (508)
.+..+..++.|+.|+|++|.+. .++..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.++ ..|..+..+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3455566666666666666665 44444456666666666666665 55566666666666666666666 335556666
Q ss_pred cCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCC-CCCEEECcCCcccccCcccccCCCCCCEEE
Q 045861 333 RDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLS-NLAFFSLAYNKLQGSIPESLGDLRSLEFLD 411 (508)
Q Consensus 333 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 411 (508)
++|++|+|++|.++ .+|..+..+++|+.|+|++|.+.+..|..+..+. .+..+++++|.+++.+|. .|+.|+
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~ 365 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIE 365 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeE
Confidence 67777777777666 5555666677777777777777766666554321 122356666666654443 344555
Q ss_pred CCCC--------cccccCcccccCCCCCCEEeCCCCcce
Q 045861 412 LSNN--------SFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 412 L~~n--------~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
+++| .+.+..+..+..++.+....+++|-+.
T Consensus 366 l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 366 INTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ------------------------------------CCC
T ss_pred eecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 5555 223233333444455555555666553
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=6.8e-15 Score=126.29 Aligned_cols=133 Identities=18% Similarity=0.173 Sum_probs=89.7
Q ss_pred CCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCE
Q 045861 306 GKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAF 385 (508)
Q Consensus 306 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 385 (508)
..+++|+.|++++|.+... +......++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 4455666666666666643 22222233677777777777643 45677777788888888777554455677888888
Q ss_pred EECcCCcccccCcc--cccCCCCCCEEECCCCcccccCcc---cccCCCCCCEEeCCCCcce
Q 045861 386 FSLAYNKLQGSIPE--SLGDLRSLEFLDLSNNSFSGFIPR---SFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 386 L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~~---~l~~l~~L~~L~l~~n~l~ 442 (508)
|++++|.++ .+|. .+..+++|+.|++++|.+....+. .+..+++|++|++++|...
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888876 4444 677778888888888888743322 3777888888888888765
No 138
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.53 E-value=1.2e-12 Score=127.75 Aligned_cols=132 Identities=10% Similarity=0.111 Sum_probs=78.6
Q ss_pred hhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCC
Q 045861 279 DSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKV 358 (508)
Q Consensus 279 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 358 (508)
.+|..+..|+.+.+.++.. ......|..+++|+.+.+. +.+..+....|..+.+|+.+++..+ ++..-..+|.++.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 4555666666666654432 2444556666777777765 3455566667777777777777654 44345567777778
Q ss_pred CcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcc
Q 045861 359 VVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSF 417 (508)
Q Consensus 359 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 417 (508)
|+.+.+..+ ++.....+|.+|++|+.+++.++... . .++....+|+.+.+..+.+
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~--~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W--NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H--HTCBCCCCC----------
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-h--hhhhccCCCCEEEeCCCCE
Confidence 888877654 55555677888888888888877554 2 4566677888887776654
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=2.1e-14 Score=123.23 Aligned_cols=130 Identities=22% Similarity=0.227 Sum_probs=84.2
Q ss_pred hCCCCCcEEecCCCcCCCCCCcCCcCC-CCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCC
Q 045861 18 QHLPRLQALDINNNHVTGPVPRNLWQC-QELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLE 96 (508)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 96 (508)
..+++|+.|++++|.++. ++. +..+ ++|++|++++|.+++. ..|..+++|++|++++|.+.+..+..+..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 456777777777777773 343 3343 3777777777777754 5677777777777777777744444456777777
Q ss_pred EeeCccccCCCCCCCCCCEEEccCCcccccCCc--cccCCCCCcEEEccCcccccccCh----hhcCCCCCCEEeCCCCc
Q 045861 97 YLVLENNNFDGPRHSNLERLYLERNNFSGTIPS--FIFNASKLSILGIRTNSFSGTIPS----TIANLRNLQWLDLSFNY 170 (508)
Q Consensus 97 ~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~~~~----~~~~l~~L~~L~l~~n~ 170 (508)
+|++++|.+. .++. .+..+++|++|++++|.+. ..|. .+..+++|+.|++++|.
T Consensus 92 ~L~L~~N~i~-------------------~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLV-------------------ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCC-------------------CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCC-------------------cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 7777777664 3333 5566667777777777666 3343 25666666666666654
Q ss_pred C
Q 045861 171 L 171 (508)
Q Consensus 171 ~ 171 (508)
.
T Consensus 152 ~ 152 (176)
T 1a9n_A 152 L 152 (176)
T ss_dssp H
T ss_pred H
Confidence 4
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=1.5e-13 Score=116.96 Aligned_cols=109 Identities=23% Similarity=0.230 Sum_probs=84.9
Q ss_pred CcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCC
Q 045861 335 ILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSN 414 (508)
Q Consensus 335 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (508)
.+.+++++|.++ .+|..+ .+.+++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467777777777 455444 36788888888888877777788888888888888888866666778888888888888
Q ss_pred CcccccCcccccCCCCCCEEeCCCCcceecCC
Q 045861 415 NSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIP 446 (508)
Q Consensus 415 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 446 (508)
|++++..+..|..+++|++|++++|++.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 88887777778888888888888888875444
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=1.7e-13 Score=116.66 Aligned_cols=102 Identities=28% Similarity=0.337 Sum_probs=83.4
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
+++++|+++ .+|..+ .++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|.++++|++|+|++|+
T Consensus 14 l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 14 VDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 477888888 688766 4788888888888887777788888888888888888887777778888888888888888
Q ss_pred cccCCchhccCCCCCCEeeCccccCC
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFD 106 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~ 106 (508)
+.+..+..|..+++|++|++++|.+.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 88666667888888888888888765
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=4.8e-16 Score=136.33 Aligned_cols=153 Identities=20% Similarity=0.203 Sum_probs=78.1
Q ss_pred CCCCCCcEEccCCcCccccch------hhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCc
Q 045861 259 KLQKLQGLYLYKNKLEGSIPD------SLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSL 332 (508)
Q Consensus 259 ~~~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 332 (508)
....++.++++.+.+.+..+. .+..+++|++|++++|.+.+ ++ .+..+++|
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L--------------------- 72 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENL--------------------- 72 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTC---------------------
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCC---------------------
Confidence 344555555555555444333 45555555555555555443 22 34444444
Q ss_pred cCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCc-ccccCCCCCCEEE
Q 045861 333 RDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIP-ESLGDLRSLEFLD 411 (508)
Q Consensus 333 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ 411 (508)
++|++++|.++ .+|..+..+++|++|++++|++.+ ++ .+..+++|++|++++|.+++..+ ..+..+++|+.|+
T Consensus 73 ---~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 73 ---RILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp ---CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred ---CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence 44444444444 333344444555555555555553 23 35555666666666666653221 3455566666666
Q ss_pred CCCCcccccCcc----------cccCCCCCCEEeCCCCcce
Q 045861 412 LSNNSFSGFIPR----------SFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 412 L~~n~~~~~~~~----------~l~~l~~L~~L~l~~n~l~ 442 (508)
+++|.+.+..|. .+..+++|+.|+ +|+++
T Consensus 147 l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp ECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 666666544332 255666677665 55544
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.46 E-value=2.1e-11 Score=118.79 Aligned_cols=149 Identities=9% Similarity=0.107 Sum_probs=107.2
Q ss_pred CCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECC
Q 045861 286 RLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLS 365 (508)
Q Consensus 286 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 365 (508)
.+..+.+.+ .+.......|..++.|+.+.+..+.. .+....|..+..|+.+.+.. .++.....+|.++.+|+.+++.
T Consensus 243 ~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp 319 (394)
T 4gt6_A 243 EDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIP 319 (394)
T ss_dssp CCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECC
T ss_pred ccceEEcCC-cceEcccceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeC
Confidence 445555443 23445667789999999999976543 46778899999999999974 4554667788999999999998
Q ss_pred CCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcce
Q 045861 366 RNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 366 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
.+ ++.....+|.+|.+|+.+.+..+ ++.+...+|.++++|+.+++.++.... .++..+.+|+.+.+..+.+.
T Consensus 320 ~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 320 EG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred Cc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence 65 66566778999999999999765 665667899999999999999986542 46778889999988777543
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=3.7e-13 Score=114.88 Aligned_cols=105 Identities=25% Similarity=0.263 Sum_probs=82.2
Q ss_pred cEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCC
Q 045861 336 LVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNN 415 (508)
Q Consensus 336 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 415 (508)
+.+++++|.++ .+|..+. +.|+.|++++|.+.+..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777776 4555443 67888888888888777777888888888888888888655566778888888888888
Q ss_pred cccccCcccccCCCCCCEEeCCCCccee
Q 045861 416 SFSGFIPRSFEKLLYLEYLNLSFNRLKG 443 (508)
Q Consensus 416 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 443 (508)
++++..+..|..+++|++|++++|++.+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 8887666678888888888888888874
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=3.2e-13 Score=115.24 Aligned_cols=102 Identities=27% Similarity=0.302 Sum_probs=78.3
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
+++++|+++ ++|..+ .++|++|++++|.+++..|..|..+++|++|+|++|+++++.+..|.++++|++|+|++|+
T Consensus 17 l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 17 VNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 467778876 777766 3778888888888887777778888888888888888887666667788888888888888
Q ss_pred cccCCchhccCCCCCCEeeCccccCC
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFD 106 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~ 106 (508)
+.+..+..|..+++|++|++++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 87555555778888888888887765
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=2.2e-15 Score=132.16 Aligned_cols=155 Identities=23% Similarity=0.234 Sum_probs=100.6
Q ss_pred hhcCCCCcEEEcccCccccccCc------cccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccC
Q 045861 233 IGNLINLITMSLGINKLTGSIPI------SLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIG 306 (508)
Q Consensus 233 l~~l~~L~~L~l~~~~~~~~~~~------~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 306 (508)
+.....++.++++.+.+.+..+. .+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+. .++..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 55667777778888887766665 88999999999999999986 56 8899999999999999986 4555555
Q ss_pred CCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccc-hhhhcCCCCCE
Q 045861 307 KLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIP-TVIGGLSNLAF 385 (508)
Q Consensus 307 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~ 385 (508)
.+++|++|++++|.+.+.. .+..+++|++| ++++|.+.+..+ ..+..+++|++
T Consensus 91 ~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L------------------------~l~~N~i~~~~~~~~l~~l~~L~~ 144 (198)
T 1ds9_A 91 VADTLEELWISYNQIASLS--GIEKLVNLRVL------------------------YMSNNKITNWGEIDKLAALDKLED 144 (198)
T ss_dssp HHHHCSEEEEEEEECCCHH--HHHHHHHSSEE------------------------EESEEECCCHHHHHHHTTTTTCSE
T ss_pred cCCcCCEEECcCCcCCcCC--ccccCCCCCEE------------------------ECCCCcCCchhHHHHHhcCCCCCE
Confidence 5566666666666665431 24444444444 444444442211 24455555666
Q ss_pred EECcCCcccccCcc----------cccCCCCCCEEECCCCccc
Q 045861 386 FSLAYNKLQGSIPE----------SLGDLRSLEFLDLSNNSFS 418 (508)
Q Consensus 386 L~L~~n~l~~~~~~----------~~~~l~~L~~L~L~~n~~~ 418 (508)
|++++|.+++..|. .+..+++|+.|| ++.++
T Consensus 145 L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 145 LLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 66666655443332 245566666665 45444
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.34 E-value=2.6e-12 Score=123.07 Aligned_cols=132 Identities=17% Similarity=0.152 Sum_probs=104.0
Q ss_pred cEEEccCC-ccccccCccccCCCCCcEEECCC-CcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECC
Q 045861 336 LVFNFSSN-SLNGSLPLDIGNLKVVVGIDLSR-NNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLS 413 (508)
Q Consensus 336 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 413 (508)
..++++++ .++ .+|. +..+.+|+.|+|++ |.+.+..+..|.++++|+.|+|++|.+++..+..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688888 888 5676 88899999999996 99997777889999999999999999998888889999999999999
Q ss_pred CCcccccCcccccCCCCCCEEeCCCCcceecCCCccc--cCCCCcccccCCCCCCCCCC
Q 045861 414 NNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGES--FANFSDNSFMGNSFLCGSPN 470 (508)
Q Consensus 414 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~--~~~l~~l~l~~n~~~c~~~~ 470 (508)
+|++++..+..+..++ |+.|++.+|++.+..+.... ........+..+.+.|..|.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG 146 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence 9999977777777766 99999999999854332211 11122344556678887664
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=4.9e-14 Score=135.59 Aligned_cols=93 Identities=22% Similarity=0.232 Sum_probs=48.4
Q ss_pred cCCcEEEccCCcccc----ccCccccCCCCCcEEECCCCcCCCcc----chhhhcCCCCCEEECcCCccccc----Cccc
Q 045861 333 RDILVFNFSSNSLNG----SLPLDIGNLKVVVGIDLSRNNLSDSI----PTVIGGLSNLAFFSLAYNKLQGS----IPES 400 (508)
Q Consensus 333 ~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~ 400 (508)
++|++|+|++|.++. .++..+...++|++|++++|.+++.. +..+...++|++|+|++|.+++. ++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 445555555555432 12223344555666666666655322 33445556666666666666542 2233
Q ss_pred ccCCCCCCEEECCCCcccccCcccc
Q 045861 401 LGDLRSLEFLDLSNNSFSGFIPRSF 425 (508)
Q Consensus 401 ~~~l~~L~~L~L~~n~~~~~~~~~l 425 (508)
+...++|++|+|++|.+++.....+
T Consensus 235 L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHhCCCCCEEeccCCCCCHHHHHHH
Confidence 3345666667777666665433333
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=1.5e-13 Score=132.22 Aligned_cols=134 Identities=22% Similarity=0.199 Sum_probs=97.7
Q ss_pred CCCCEEEcCCCcccccCCc-cccCccCCcEEEccCCccccccCccc-----cCCCCCcEEECCCCcCCCc----cchhhh
Q 045861 309 SPLRNLLLHSNVLTYVIPS-TFLSLRDILVFNFSSNSLNGSLPLDI-----GNLKVVVGIDLSRNNLSDS----IPTVIG 378 (508)
Q Consensus 309 ~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~~ 378 (508)
++|++|++++|.+...... ....+++|++|+|++|.++......+ ...+.|++|++++|.+++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 4566666666665433222 22344578888888888864433333 3467899999999999753 344557
Q ss_pred cCCCCCEEECcCCcccccC----cccccCCCCCCEEECCCCccccc----CcccccCCCCCCEEeCCCCcce
Q 045861 379 GLSNLAFFSLAYNKLQGSI----PESLGDLRSLEFLDLSNNSFSGF----IPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 379 ~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
..++|++|+|++|.+++.. +..+...++|++|+|++|.+++. ++..+...++|++|++++|++.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 8899999999999998533 56667788999999999999863 3345556799999999999986
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=7.1e-12 Score=120.09 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=81.6
Q ss_pred CEEEcCCC-cccccCCccccCccCCcEEEccC-CccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECc
Q 045861 312 RNLLLHSN-VLTYVIPSTFLSLRDILVFNFSS-NSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLA 389 (508)
Q Consensus 312 ~~L~l~~n-~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 389 (508)
..++.+++ .++.+ |. +..+.+|++|+|++ |.+++..+..|..+++|+.|+|++|++.+..+..|..+++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34677776 67754 44 77888888888886 88887777778888888888888888887777788888888888888
Q ss_pred CCcccccCcccccCCCCCCEEECCCCcccc
Q 045861 390 YNKLQGSIPESLGDLRSLEFLDLSNNSFSG 419 (508)
Q Consensus 390 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 419 (508)
+|.+++..+..|..++ |+.|+|++|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8888865555565555 8888888888874
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.27 E-value=7.5e-10 Score=107.30 Aligned_cols=145 Identities=10% Similarity=0.080 Sum_probs=78.8
Q ss_pred hhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCc
Q 045861 281 LCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVV 360 (508)
Q Consensus 281 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 360 (508)
+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++.+....|..+.+|+.+.+..+ +......+|..+.+|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 334444444444332 12233334445555555555443 34444455555566666655443 3323444556666666
Q ss_pred EEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCC
Q 045861 361 GIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLY 430 (508)
Q Consensus 361 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 430 (508)
.+.+.++.+......+|.++.+|+.+++..+ ++.+...+|.++++|+.+.+..+ ++.....+|.+++.
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 6666666665555566677777777777544 44455566777777777777544 44455556666543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.25 E-value=2.3e-09 Score=103.80 Aligned_cols=147 Identities=8% Similarity=0.014 Sum_probs=92.2
Q ss_pred ccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccC
Q 045861 255 ISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRD 334 (508)
Q Consensus 255 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 334 (508)
..+..+..++.+.+..+ +.......|..+..|+.+.+..+ ++......|..+.+|+.+.+..+ +.......|..+.+
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 34455556666666443 22233445666667777776554 33444556666777777777543 44455666777777
Q ss_pred CcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCC
Q 045861 335 ILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRS 406 (508)
Q Consensus 335 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (508)
|+.+.+.++.++.....+|.++.+|+.+.+..+ ++.....+|.+|++|+++.+..+ ++.+...+|.++..
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 777777777666555667777777777777654 55455567788888888888654 55455567766643
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=5.2e-10 Score=106.56 Aligned_cols=159 Identities=13% Similarity=0.143 Sum_probs=80.5
Q ss_pred cchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCcccc--CccCCcEEEccC--Cccccc----
Q 045861 277 IPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFL--SLRDILVFNFSS--NSLNGS---- 348 (508)
Q Consensus 277 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~L~~--n~l~~~---- 348 (508)
+...+..+|+|+.|.+++|.-. .++. + .+++|+.|++..|.+.......+. .+++|+.|+|+. +...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 3345566777777777766211 1222 2 256777777776665433222222 466777776642 111100
Q ss_pred -cCccc--cCCCCCcEEECCCCcCCCccchhhh---cCCCCCEEECcCCcccccC----cccccCCCCCCEEECCCCccc
Q 045861 349 -LPLDI--GNLKVVVGIDLSRNNLSDSIPTVIG---GLSNLAFFSLAYNKLQGSI----PESLGDLRSLEFLDLSNNSFS 418 (508)
Q Consensus 349 -~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~~~ 418 (508)
+...+ ..+++|+.|++.+|.+.+..+..+. .+++|++|+|+.|.+++.. +..+..+++|+.|++++|.++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 11111 2356666666666666543333332 3556666666666665432 222334566666666666665
Q ss_pred ccCcccccC-CCCCCEEeCCCCc
Q 045861 419 GFIPRSFEK-LLYLEYLNLSFNR 440 (508)
Q Consensus 419 ~~~~~~l~~-l~~L~~L~l~~n~ 440 (508)
......+.. + ...+++++++
T Consensus 321 d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 321 DEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHHHc--CCEEEecCCc
Confidence 433333332 2 2445565555
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=3.4e-09 Score=100.94 Aligned_cols=156 Identities=18% Similarity=0.198 Sum_probs=84.7
Q ss_pred ccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCccc--CCCCCCCEEEcCCC--ccccc-----CCc
Q 045861 257 LGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACI--GKLSPLRNLLLHSN--VLTYV-----IPS 327 (508)
Q Consensus 257 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~--~~~~~L~~L~l~~n--~~~~~-----~~~ 327 (508)
+..+|+|+.|.++++.-. .++. + ..++|+.|++..|.+.......+ ..+|+|+.|+++.+ ...+. ...
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 344455555555554211 1111 1 24556666665555432222222 24566666665421 11000 001
Q ss_pred cc--cCccCCcEEEccCCccccccCccc---cCCCCCcEEECCCCcCCCccchh----hhcCCCCCEEECcCCcccccCc
Q 045861 328 TF--LSLRDILVFNFSSNSLNGSLPLDI---GNLKVVVGIDLSRNNLSDSIPTV----IGGLSNLAFFSLAYNKLQGSIP 398 (508)
Q Consensus 328 ~~--~~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~ 398 (508)
.+ ..+++|++|++.+|.+....+..+ ..++.|++|+++.|.+.+..+.. +..+++|+.|++++|.+++...
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 11 246788888888777764322222 24778999999988888644333 3457899999999998876544
Q ss_pred ccccCCCCCCEEECCCCc
Q 045861 399 ESLGDLRSLEFLDLSNNS 416 (508)
Q Consensus 399 ~~~~~l~~L~~L~L~~n~ 416 (508)
..+... -...+++++++
T Consensus 325 ~~l~~a-lg~~~~~~~~~ 341 (362)
T 2ra8_A 325 KELQKS-LPMKIDVSDSQ 341 (362)
T ss_dssp HHHHHH-CCSEEECCSBC
T ss_pred HHHHHH-cCCEEEecCCc
Confidence 444421 14668888887
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.66 E-value=1.4e-08 Score=87.24 Aligned_cols=114 Identities=16% Similarity=0.134 Sum_probs=70.6
Q ss_pred ccCccCCcEEEccCC-cccc----ccCccccCCCCCcEEECCCCcCCCcc----chhhhcCCCCCEEECcCCccccc---
Q 045861 329 FLSLRDILVFNFSSN-SLNG----SLPLDIGNLKVVVGIDLSRNNLSDSI----PTVIGGLSNLAFFSLAYNKLQGS--- 396 (508)
Q Consensus 329 ~~~~~~L~~L~L~~n-~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~--- 396 (508)
+...++|++|+|++| .+.. .+...+...+.|++|++++|.+.+.. ...+...++|++|+|++|.+++.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 334455555555555 4432 12334455566777777777776432 33445567788888888877643
Q ss_pred -CcccccCCCCCCEEEC--CCCccccc----CcccccCCCCCCEEeCCCCcce
Q 045861 397 -IPESLGDLRSLEFLDL--SNNSFSGF----IPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 397 -~~~~~~~l~~L~~L~L--~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
+..++...++|++|+| ++|.+... +.+.+...++|++|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455566677888888 77877653 3344555677888888888764
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.53 E-value=3.2e-08 Score=84.94 Aligned_cols=88 Identities=13% Similarity=0.103 Sum_probs=51.1
Q ss_pred CccCCcEEEccCCccccc----cCccccCCCCCcEEECCCCcCCCc----cchhhhcCCCCCEEEC--cCCccccc----
Q 045861 331 SLRDILVFNFSSNSLNGS----LPLDIGNLKVVVGIDLSRNNLSDS----IPTVIGGLSNLAFFSL--AYNKLQGS---- 396 (508)
Q Consensus 331 ~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L--~~n~l~~~---- 396 (508)
..++|++|+|++|.+... +...+...+.|++|++++|.+.+. +..++...++|++|++ ++|.+++.
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~ 142 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 142 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence 344455555555554321 233344455677777777776643 2344555667777777 66777643
Q ss_pred CcccccCCCCCCEEECCCCccc
Q 045861 397 IPESLGDLRSLEFLDLSNNSFS 418 (508)
Q Consensus 397 ~~~~~~~l~~L~~L~L~~n~~~ 418 (508)
+...+...++|++|++++|.+.
T Consensus 143 l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCcCEEeccCCCCC
Confidence 2344455577778888777765
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.42 E-value=6.5e-08 Score=80.78 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=42.8
Q ss_pred CCcEEECCCCcCCCccchhhhcCCCCCEEECcCCc-ccccCcccccCC----CCCCEEECCCCc-ccccCcccccCCCCC
Q 045861 358 VVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNK-LQGSIPESLGDL----RSLEFLDLSNNS-FSGFIPRSFEKLLYL 431 (508)
Q Consensus 358 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-~~~~~~~~l~~l~~L 431 (508)
.|+.||+++|.+++.....+.++++|+.|+|++|. +++..-..+..+ ++|++|+|++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555554444445555556666665553 444333334332 246666666653 554333444555666
Q ss_pred CEEeCCCCc
Q 045861 432 EYLNLSFNR 440 (508)
Q Consensus 432 ~~L~l~~n~ 440 (508)
++|++++|+
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666654
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=1.5e-07 Score=84.89 Aligned_cols=62 Identities=26% Similarity=0.430 Sum_probs=27.5
Q ss_pred CCCCcEEECCCCcCCC--ccchhhhcCCCCCEEECcCCcccccCcccccCCC--CCCEEECCCCcccc
Q 045861 356 LKVVVGIDLSRNNLSD--SIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLR--SLEFLDLSNNSFSG 419 (508)
Q Consensus 356 l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~~~~ 419 (508)
++.|++|+|++|.+.+ .++..+..+++|+.|+|++|.+++. ..+..+. +|++|+|++|.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 4445555555555543 2223344455555555555555432 1122222 45555555555443
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.29 E-value=2.1e-07 Score=83.91 Aligned_cols=80 Identities=21% Similarity=0.317 Sum_probs=48.8
Q ss_pred hCCCCCcEEecCCCcCCC--CCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCC--CCCeEEccCCccccCCc-------
Q 045861 18 QHLPRLQALDINNNHVTG--PVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLT--SARALLLGNNNLIGEIP------- 86 (508)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~------- 86 (508)
.++++|+.|+|++|.+++ .++..+..+++|++|+|++|++++. ..+..+. +|++|+|++|.+.+..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456777777777777765 2334455677777777777777644 2233333 67777777777664333
Q ss_pred hhccCCCCCCEee
Q 045861 87 HEIGNLHNLEYLV 99 (508)
Q Consensus 87 ~~~~~l~~L~~L~ 99 (508)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2355666666665
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.25 E-value=4.5e-07 Score=75.67 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=57.9
Q ss_pred cCCcEEEccCCccccccCccccCCCCCcEEECCCCc-CCCccchhhhcC----CCCCEEECcCCc-ccccCcccccCCCC
Q 045861 333 RDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNN-LSDSIPTVIGGL----SNLAFFSLAYNK-LQGSIPESLGDLRS 406 (508)
Q Consensus 333 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~ 406 (508)
..|++|++++|.++..--..+..+++|+.|+|++|. +++.....+..+ ++|++|+|++|. +|+.....+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356777777776665444456677777777777774 665555555553 468888888874 77665566677788
Q ss_pred CCEEECCCCc
Q 045861 407 LEFLDLSNNS 416 (508)
Q Consensus 407 L~~L~L~~n~ 416 (508)
|+.|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888888885
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.85 E-value=2.5e-05 Score=62.20 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=17.4
Q ss_pred CCCEEECCCCcccccCcccccCCCCCCEEeCCCCc
Q 045861 406 SLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNR 440 (508)
Q Consensus 406 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 440 (508)
+|+.|+|++|+|+...++.|..+++|+.|+|++|+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 45555555555554444445555555544444333
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.72 E-value=3.2e-05 Score=65.76 Aligned_cols=111 Identities=19% Similarity=0.133 Sum_probs=69.4
Q ss_pred CccCCcEEEccCC-cccc----ccCccccCCCCCcEEECCCCcCCCcc----chhhhcCCCCCEEECcCCccccc----C
Q 045861 331 SLRDILVFNFSSN-SLNG----SLPLDIGNLKVVVGIDLSRNNLSDSI----PTVIGGLSNLAFFSLAYNKLQGS----I 397 (508)
Q Consensus 331 ~~~~L~~L~L~~n-~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~ 397 (508)
.-+.|++|+|+++ .+.. .+..++..-..|+.|+|++|.+.+.. .+++..-+.|++|+|++|.|++. +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3455666666654 4432 23444556667777777777777433 34455667788888888887743 3
Q ss_pred cccccCCCCCCEEECCCC---cccc----cCcccccCCCCCCEEeCCCCcc
Q 045861 398 PESLGDLRSLEFLDLSNN---SFSG----FIPRSFEKLLYLEYLNLSFNRL 441 (508)
Q Consensus 398 ~~~~~~l~~L~~L~L~~n---~~~~----~~~~~l~~l~~L~~L~l~~n~l 441 (508)
.+++...+.|++|+|++| .+.. .+.+.+..-+.|+.|+++.|..
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 355566677888888765 3332 2334556667888888877654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.19 E-value=0.00033 Score=59.56 Aligned_cols=92 Identities=15% Similarity=0.073 Sum_probs=70.6
Q ss_pred CccccCCCCCcEEECCCC-cCCCc----cchhhhcCCCCCEEECcCCcccccC----cccccCCCCCCEEECCCCccccc
Q 045861 350 PLDIGNLKVVVGIDLSRN-NLSDS----IPTVIGGLSNLAFFSLAYNKLQGSI----PESLGDLRSLEFLDLSNNSFSGF 420 (508)
Q Consensus 350 ~~~~~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~~~~~ 420 (508)
...+..-+.|++|+|++| .+.+. +.+++..-+.|++|+|++|.+.+.. .+.+...+.|++|+|++|.|...
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 334566789999999996 88754 3455667789999999999998543 34455678999999999999863
Q ss_pred ----CcccccCCCCCCEEeCCCCcc
Q 045861 421 ----IPRSFEKLLYLEYLNLSFNRL 441 (508)
Q Consensus 421 ----~~~~l~~l~~L~~L~l~~n~l 441 (508)
+.+++..-+.|++|++++|..
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~ 138 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQ 138 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred HHHHHHHHHhhCCceeEEECCCCcC
Confidence 345566678899999997643
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.70 E-value=0.0021 Score=50.89 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=44.1
Q ss_pred cEEecCCCcCC-CCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccc
Q 045861 24 QALDINNNHVT-GPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLI 82 (508)
Q Consensus 24 ~~L~l~~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 82 (508)
+.++.+++.++ ..+|..+ .++|++|+|++|+|+.+.+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46788888876 2455433 356899999999998777778888999999999988765
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=84.31 E-value=2.5 Score=31.13 Aligned_cols=47 Identities=9% Similarity=0.114 Sum_probs=21.8
Q ss_pred CCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEccc
Q 045861 6 NTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSH 54 (508)
Q Consensus 6 n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 54 (508)
.+++ .|....|.+|.+|+.+.+-.+- +.+-..+|.+|.+|+.+.+.+
T Consensus 6 ~~vt-~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVV-GMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCC-SSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred CccC-EecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence 3444 4444555555555555554432 223334455555555555443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=78.01 E-value=8 Score=28.31 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=33.3
Q ss_pred CcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCC
Q 045861 31 NHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNN 79 (508)
Q Consensus 31 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 79 (508)
..++.+-..+|.+|..|+.+.|-.+ ++.+...+|.++.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3445555567777888888877764 55566677778888888877654
Done!