BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045862
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 220 bits (561), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 126/300 (42%), Positives = 170/300 (56%), Gaps = 64/300 (21%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTD--ELLEMTS 58
MH+AE G+GP ILF++ FPEL YSW HQ + LA YRAVAPDL G+GDT L + +
Sbjct: 23 MHLAELGEGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYGDTTGAPLNDPSK 82
Query: 59 YTCFHVIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVF--- 115
++ H++GD++ L++ +APN+EK+FVV HD G +A LCLFR +++KALVNLSV F
Sbjct: 83 FSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSVHFSKR 142
Query: 116 NP--NTSE-----------------PGEIEAEFEQISTEIVIKEFLTLWTPDPIILPKGK 156
NP N E PGEIEAEF I + V+K+ LT P P PKGK
Sbjct: 143 NPKMNVVEGLKAIYGEDHYISRFQVPGEIEAEFAPIGAKSVLKKILTYRDPAPFYFPKGK 202
Query: 157 GYGQPPDAIIALPGWLSDED----------------VNTTRPIGTNYCDLTS-------- 192
G PDA +AL WLS+E+ VN R + N+ +LT+
Sbjct: 203 GLEAIPDAPVALSSWLSEEELDYYANKFEQTGFTGAVNYYRALPINW-ELTAPWTGAQVK 261
Query: 193 ---------------VCGVKEYIHKGEFRRDVPLLEEITIMEGVGHFINQEKGHQLETEI 237
+ G KEYIH G F++DVPLLEE+ ++EG HF++QE+ H++ I
Sbjct: 262 VPTKFIVGEFDLVYHIPGAKEYIHNGGFKKDVPLLEEVVVLEGAAHFVSQERPHEISKHI 321
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 220 bits (561), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 126/300 (42%), Positives = 170/300 (56%), Gaps = 64/300 (21%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTD--ELLEMTS 58
MH+AE G+GP ILF++ FPEL YSW HQ + LA YRAVAPDL G+GDT L + +
Sbjct: 23 MHLAELGEGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYGDTTGAPLNDPSK 82
Query: 59 YTCFHVIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVF--- 115
++ H++GD++ L++ +APN+EK+FVV HD G +A LCLFR +++KALVNLSV F
Sbjct: 83 FSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSVHFSKR 142
Query: 116 NP--NTSE-----------------PGEIEAEFEQISTEIVIKEFLTLWTPDPIILPKGK 156
NP N E PGEIEAEF I + V+K+ LT P P PKGK
Sbjct: 143 NPKMNVVEGLKAIFGEDHYISRFQVPGEIEAEFAPIGAKSVLKKILTYRDPAPFYFPKGK 202
Query: 157 GYGQPPDAIIALPGWLSDED----------------VNTTRPIGTNYCDLTS-------- 192
G PDA +AL WLS+E+ VN R + N+ +LT+
Sbjct: 203 GLEAIPDAPVALSSWLSEEELDYYANKFEQTGFTGAVNYYRALPINW-ELTAPWTGAQVK 261
Query: 193 ---------------VCGVKEYIHKGEFRRDVPLLEEITIMEGVGHFINQEKGHQLETEI 237
+ G KEYIH G F++DVPLLEE+ ++EG HF++QE+ H++ I
Sbjct: 262 VPTKFIVGEFDLVYHIPGAKEYIHNGGFKKDVPLLEEVVVLEGAAHFVSQERPHEISKHI 321
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 8 QGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYTCFHVIGD 67
QGP ++ L+ FPE YSW HQ ALA YR VA D G+G + + +Y ++GD
Sbjct: 32 QGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGD 91
Query: 68 LIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVF 115
++G++D + E+ FVVGHD G +A +R +V +SV F
Sbjct: 92 VVGVLD--SYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF 137
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 8 QGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYTCFHVIGD 67
QGP ++ L+ FPE YSW HQ ALA YR VA D G+G + + +Y ++GD
Sbjct: 26 QGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGD 85
Query: 68 LIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVF 115
++G++D + E+ FVVGHD G +A +R +V +SV F
Sbjct: 86 VVGVLD--SYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF 131
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 23/152 (15%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYT 60
+H E G GP + + FPE YSW +Q ALA YR +A D+ G+G++ E+ Y
Sbjct: 31 LHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYC 90
Query: 61 CFHVIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVF---NP 117
+ +++ +D + + + +GHD G + ++ LF R++A+ +L+ F NP
Sbjct: 91 MEVLCKEMVTFLDKLGLS--QAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANP 148
Query: 118 NTS------------------EPGEIEAEFEQ 131
N S EPG EAE EQ
Sbjct: 149 NMSPLESIKANPVFDYQLYFQEPGVAEAELEQ 180
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 23/152 (15%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYT 60
+H E G GP + + FPE YSW +Q ALA YR +A D+ G+G++ E+ Y
Sbjct: 46 LHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYC 105
Query: 61 CFHVIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVF---NP 117
+ +++ +D + + + +GHD G + ++ LF R++A+ +L+ F NP
Sbjct: 106 MEVLCKEMVTFLDKLGLS--QAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANP 163
Query: 118 NTS------------------EPGEIEAEFEQ 131
N S EPG EAE EQ
Sbjct: 164 NMSPLESIKANPVFDYQLYFQEPGVAEAELEQ 195
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 23/152 (15%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYT 60
+H E G GP + + FPE YSW +Q ALA YR +A D+ G+G++ E+ Y
Sbjct: 250 LHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYC 309
Query: 61 CFHVIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVF---NP 117
+ +++ +D + + + +GHD G + ++ LF R++A+ +L+ F NP
Sbjct: 310 MEVLCKEMVTFLDKLGLS--QAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANP 367
Query: 118 NTS------------------EPGEIEAEFEQ 131
N S EPG EAE EQ
Sbjct: 368 NMSPLESIKANPVFDYQLYFQEPGVAEAELEQ 399
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYT 60
+H E G GP + + FPE +SW +Q ALA +R +A D+ G+GD+ E+ Y
Sbjct: 248 LHFVEMGSGPALCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSPPEIEEYA 307
Query: 61 CFHVIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVFNP 117
+ +++ +D + + +GHD M + LF R++A+ +L+ F P
Sbjct: 308 MELLCKEMVTFLDKLG--IPQAVFIGHDWAGVMVWNMALFYPERVRAVASLNTPFMP 362
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 10 PEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYTCFHVIGDLI 69
P +L ++ E +W + LA+ YR VAPDL G G + L +TSY+ + +
Sbjct: 27 PVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSHLEMVTSYSSLTFLAQID 86
Query: 70 GLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVFNPNTSEPGEIEAEF 129
+I + D+ + +VGH G +A + R +IK L+ +V P +E + E+
Sbjct: 87 RVIQELP--DQPLLLVGHSMGAMLATAIASVRPKKIKELI---LVELPLPAEESKKESAV 141
Query: 130 EQIST 134
Q++T
Sbjct: 142 NQLTT 146
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTD--ELLEMTS 58
+H +G GP +L L+ +P + W + I + Y + PDL GFGD++ +L +++
Sbjct: 21 IHYVREGAGPTLLLLHGWPGFWWEWS-KVIGPLAEHYDVIVPDLRGFGDSEKPDLNDLSK 79
Query: 59 YTCFHVIGDLIGLIDLVAPNDEKMFVVGHD-SGTYMACFLCLFRANRIKALVNLSVVFNP 117
Y+ D L+D A EK +VVGHD + + F+ + IKA +F+P
Sbjct: 80 YSLDKAADDQAALLD--ALGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKA-----AIFDP 132
Query: 118 NTSEPGEI 125
+ G +
Sbjct: 133 IQPDFGPV 140
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDEL-LEMTSY 59
+ VA KG GP +L L+ +P+ +W H+ + Y V DL G+G++ L E Y
Sbjct: 23 LRVAVKGSGPPLLLLHGYPQTHLAW-HRIAPRLAEDYSVVLADLRGYGESRALDEEGADY 81
Query: 60 TCFHVIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVV 114
+ + D + + + E+ V+GHD G + L L + A V+L+VV
Sbjct: 82 SKAALARDQLETMGQL--GFERFAVIGHDRGARVGYRLALDHPQAVAAFVSLTVV 134
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDE---LLEMT 57
+++ + G G +L L+ +P+ W H+ L + ++ VA DL G+GD+ +
Sbjct: 17 INLVKAGHGAPLLLLHGYPQTHVMW-HKIAPLLANNFTVVATDLRGYGDSSRPASVPHHI 75
Query: 58 SYTCFHVIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVV 114
+Y+ + D + ++ + E+ +VVGHD G +A L L +R+K L L +
Sbjct: 76 NYSKRVMAQDQVEVMSKLG--YEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDIA 130
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 5 EKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYTCFHV 64
++G G +LFL+ P Y W + + + YRAVAPDL G GD+ + Y
Sbjct: 25 DEGSGQPVLFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGXGDSAK--PDIEYRLQDH 82
Query: 65 IGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVFNPNTSEP 122
+ G ID + +D + + HD G+ + +R+ A+ + P P
Sbjct: 83 VAYXDGFIDALGLDDXVLVI--HDWGSVIGXRHARLNPDRVAAVAFXEALVPPALPXP 138
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 23 YSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKM 82
Y+ TI S YR +APD+ GFG TD E +Y+ + +IG++D A EK
Sbjct: 41 YANWRLTIPALSKFYRVIAPDMVGFGFTDR-PENYNYSKDSWVDHIIGIMD--ALEIEKA 97
Query: 83 FVVGHDSGTYMACFLCLFRANRIKALVNLSVV 114
+VG+ G +A L + R+ +V + V
Sbjct: 98 HIVGNSFGGGLAIATALRYSERVDRMVLMGAV 129
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYT 60
+H + GQGP ++ ++ F + Y W HQ + + + +APDL G G ++ T Y+
Sbjct: 22 LHYVKGGQGPLVMLVHGFGQTWYEW-HQLMPELAKRFTVIAPDLPGLGQSEP--PKTGYS 78
Query: 61 CFHVIGDLIGLIDLVAPNDEKMFVVGHDSGTY 92
V L L +P D +V HD G +
Sbjct: 79 GEQVAVYLHKLARQFSP-DRPFDLVAHDIGIW 109
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYT 60
+H + GQGP ++ ++ F + Y W HQ + + + +APDL G G ++ T Y+
Sbjct: 22 LHYVKGGQGPLVMLVHGFGQTWYEW-HQLMPELAKRFTVIAPDLPGLGQSEP--PKTGYS 78
Query: 61 CFHVIGDLIGLIDLVAPNDEKMFVVGHDSGTY 92
V L L +P D +V HD G +
Sbjct: 79 GEQVAVYLHKLARQFSP-DRPFDLVAHDIGIW 109
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYT 60
+H + GQGP ++ ++ F + Y W HQ + + + +APDL G G ++ T Y+
Sbjct: 22 LHYVKGGQGPLVMLVHGFGQTWYEW-HQLMPELAKRFTVIAPDLPGLGQSEP--PKTGYS 78
Query: 61 CFHVIGDLIGLIDLVAPNDEKMFVVGHDSGTY 92
V L L +P D +V HD G +
Sbjct: 79 GEQVAVYLHKLARQFSP-DRPFDLVAHDIGIW 109
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 23 YSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKM 82
Y+ TI S YR +APD+ GFG TD E +Y+ + +IG++D A EK
Sbjct: 41 YANWRLTIPALSKFYRVIAPDMVGFGFTDR-PENYNYSKDSWVDHIIGIMD--ALEIEKA 97
Query: 83 FVVGHDSGTYMACFLCLFRANRIKALV 109
+VG+ G +A L + R+ +V
Sbjct: 98 HIVGNAFGGGLAIATALRYSERVDRMV 124
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 13/134 (9%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYT 60
++ + G G ++ ++ FP +SW Q+ AL YR + D GFG + + Y
Sbjct: 16 LYYEDHGTGVPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDYD 75
Query: 61 CFHVIGDLIGLIDLVAPNDEKMFVVGHDSGT-YMACFLCLFRANRIKALVNLSVV----- 114
F DL +++ + D + VG GT +A ++ + RI A+ L+ +
Sbjct: 76 TF--AADLNTVLETLDLQDAVL--VGFSMGTGEVARYVSSYGTARIAAVAFLASLEPFLL 131
Query: 115 ---FNPNTSEPGEI 125
NP+ + P E
Sbjct: 132 KTDDNPDGAAPQEF 145
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 13/117 (11%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYT 60
++ ++G G ++ ++ +P +SW QT L + YR + D GFG + ++ Y
Sbjct: 15 LYYEDQGSGQPVVLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSSKVNTGYDYD 74
Query: 61 CF----HVIGDLIGLIDLVAPNDEKMFVVGHDSGT-YMACFLCLFRANRIKALVNLS 112
F H + + + L D+V +VG GT +A ++ + R+ L L+
Sbjct: 75 TFAADLHTVLETLDLRDVV--------LVGFSMGTGELARYVARYGHERVAKLAFLA 123
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYT 60
++ + G G +LF + +P W +Q L+S YR +A D GFG +D+ Y
Sbjct: 11 IYFKDWGSGKPVLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYD 70
Query: 61 CF-HVIGDLIGLIDLVAPNDEKMFVVGHD-SGTYMACFLCLFRANRIKALVNLSVV 114
F I LI +DL +++ +VG G +A ++ + R+ LV L V
Sbjct: 71 TFADDIAQLIEHLDL-----KEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAV 121
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYT 60
++ + G G +LF + +P W +Q L+S YR +A D GFG +D+ Y
Sbjct: 11 IYFKDWGSGKPVLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYD 70
Query: 61 CF-HVIGDLIGLIDLVAPNDEKMFVVGHD-SGTYMACFLCLFRANRIKALVNLSVV 114
F I LI +DL +++ +VG G +A ++ + R+ LV L V
Sbjct: 71 TFADDIAQLIEHLDL-----KEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAV 121
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 85/206 (41%), Gaps = 20/206 (9%)
Query: 7 GQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFG-----DTDELLEMTSYTC 61
G GP +L L+ FP+ W H+ + ++ + DL G+G ++DE + T YT
Sbjct: 31 GDGPPLLLLHGFPQTHVMW-HRVAPKLAERFKVIVADLPGYGWSDMPESDE--QHTPYTK 87
Query: 62 FHVIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVFNPNTSE 121
+ LI ++ + + GHD G ++ L L R+ L L ++ T E
Sbjct: 88 RAMAKQLIEAMEQL--GHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDIL---PTYE 142
Query: 122 PGEIEAEFEQISTEIVIKEFLTLWTPDPIILPKGKGYGQPPDAIIA-LPGWLSDEDVNTT 180
+++++ +K + + P LP+ G P + A L W D++
Sbjct: 143 ------YWQRMNRAYALKIYHWSFLAQPAPLPENLLGGDPDFYVKAKLASWTRAGDLSAF 196
Query: 181 RPIGTNYCDLTSVCGVKEYIHKGEFR 206
P + + ++ ++ ++R
Sbjct: 197 DPRAVEHYRIAFADPMRRHVMCEDYR 222
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 13/134 (9%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYT 60
++ + G G ++ ++ FP +SW Q+ AL YR + D GFG + + Y
Sbjct: 15 LYYEDHGTGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDYD 74
Query: 61 CFHVIGDLIGLIDLVAPNDEKMFVVGHDSGT-YMACFLCLFRANRIKALVNLSVV----- 114
F DL +++ + D + VG +GT +A ++ + RI + L+ +
Sbjct: 75 TF--AADLNTVLETLDLQDAVL--VGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLL 130
Query: 115 ---FNPNTSEPGEI 125
NP+ + P E
Sbjct: 131 KTDDNPDGAAPQEF 144
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 85/206 (41%), Gaps = 20/206 (9%)
Query: 7 GQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFG-----DTDELLEMTSYTC 61
G GP +L L+ FP+ W H+ + ++ + DL G+G ++DE + T YT
Sbjct: 31 GDGPPLLLLHGFPQTHVMW-HRVAPKLAERFKVIVADLPGYGWSDMPESDE--QHTPYTK 87
Query: 62 FHVIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVFNPNTSE 121
+ LI ++ + + GHD G ++ L L R+ L L ++ T E
Sbjct: 88 RAMAKQLIEAMEQL--GHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDIL---PTYE 142
Query: 122 PGEIEAEFEQISTEIVIKEFLTLWTPDPIILPKGKGYGQPPDAIIA-LPGWLSDEDVNTT 180
+++++ +K + + P LP+ G P + A L W D++
Sbjct: 143 ------YWQRMNRAYALKIYHWSFLAQPAPLPENLLGGDPDFYVKAKLASWTRAGDLSAF 196
Query: 181 RPIGTNYCDLTSVCGVKEYIHKGEFR 206
P + + ++ ++ ++R
Sbjct: 197 DPRAVEHYRIAFADPMRRHVMCEDYR 222
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 13/134 (9%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYT 60
++ + G G ++ ++ FP +SW Q+ AL YR + D GFG + + Y
Sbjct: 15 LYYEDHGAGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDYD 74
Query: 61 CFHVIGDLIGLIDLVAPNDEKMFVVGHDSGT-YMACFLCLFRANRIKALVNLSVV----- 114
F DL +++ + D + VG GT +A ++ + RI + L+ +
Sbjct: 75 TF--AADLNTVLETLDLQDAVL--VGFSMGTGEVARYVSSYGTARIAKVAFLASLEPFLL 130
Query: 115 ---FNPNTSEPGEI 125
NP+ + P E
Sbjct: 131 KTDDNPDGAAPKEF 144
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 13/134 (9%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYT 60
++ + G G ++ ++ FP +SW Q+ AL YR + D GFG + + Y
Sbjct: 15 LYYEDHGTGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDYD 74
Query: 61 CFHVIGDLIGLIDLVAPNDEKMFVVGHDSGT-YMACFLCLFRANRIKALVNLSVV----- 114
F DL +++ + D + VG GT +A ++ + RI + L+ +
Sbjct: 75 TF--AADLNTVLETLDLQDAVL--VGFSMGTGEVARYVSSYGTARIAKVAFLASLEPFLL 130
Query: 115 ---FNPNTSEPGEI 125
NP+ + P E
Sbjct: 131 KTDDNPDGAAPQEF 144
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 85/206 (41%), Gaps = 20/206 (9%)
Query: 7 GQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFG-----DTDELLEMTSYTC 61
G GP +L L+ FP+ W H+ + ++ + DL G+G ++DE + T YT
Sbjct: 31 GDGPPLLLLHGFPQTHVMW-HRVAPKLAERFKVIVADLPGYGWSDMPESDE--QHTPYTK 87
Query: 62 FHVIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVFNPNTSE 121
+ LI ++ + + GH+ G ++ L L R+ L L ++ T E
Sbjct: 88 RAMAKQLIEAMEQL--GHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDIL---PTYE 142
Query: 122 PGEIEAEFEQISTEIVIKEFLTLWTPDPIILPKGKGYGQPPDAIIA-LPGWLSDEDVNTT 180
+++++ +K + + P LP+ G P + A L W D++
Sbjct: 143 ------YWQRMNRAYALKIYHWSFLAQPAPLPENLLGGDPDFYVKAKLASWTRAGDLSAF 196
Query: 181 RPIGTNYCDLTSVCGVKEYIHKGEFR 206
P + + ++ ++ ++R
Sbjct: 197 DPRAVEHYRIAFADPMRRHVMCEDYR 222
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 74/161 (45%), Gaps = 17/161 (10%)
Query: 2 HVAEKGQGPEILFLYVFPELRYSWCHQTI--ALASLSYRAVAPDLSGFGDTDELLEMTSY 59
++ E E +FL + E +S+ ++ + A R +APD GFG +D+ ++ Y
Sbjct: 38 YLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDY 97
Query: 60 TCFHVIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSV------ 113
T L+ LI+ + + + +V D G ++ L + +R K L+ ++
Sbjct: 98 TFEFHRNFLLALIERL--DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDP 155
Query: 114 ----VFNPNTSEP--GEIEAEFEQIS-TEIVIKEFLTLWTP 147
F+ ++P G +++ ++ +++ + +F+ W P
Sbjct: 156 VTQPAFSAFVTQPADGWTAWKYDLVTPSDLRLDQFMKRWAP 196
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 7 GQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELL---EMTSYTCFH 63
G GP +L L+ FP+ + W LA+ Y V DL G+G + + + + +Y+
Sbjct: 23 GSGPALLLLHGFPQNLHMWARVAPLLAN-EYTVVCADLRGYGGSSKPVGAPDHANYSFRA 81
Query: 64 VIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVV 114
+ D L+ + E+ +VGHD G + L + + +L L ++
Sbjct: 82 MASDQRELMRTL--GFERFHLVGHDRGGRTGHRMALDHPDSVLSLAVLDII 130
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 12/153 (7%)
Query: 1 MHVAEKG--QGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTS 58
MH + G G +LFL+ P Y W I + S+R +APDL G G +D+ ++
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYLW-RNIIPHVAPSHRCIAPDLIGMGKSDK-PDLDY 79
Query: 59 YTCFHV--IGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVFN 116
+ HV + I + L E++ +V HD G+ + R+K + + +
Sbjct: 80 FFDDHVRYLDAFIEALGL-----EEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRP 134
Query: 117 -PNTSEPGEIEAEFEQISTEIVIKEFLTLWTPD 148
P E E EQ E + F T D
Sbjct: 135 IPTWDEFHHTEVAEEQDHAEAARETFQAFRTAD 167
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 12/153 (7%)
Query: 1 MHVAEKG--QGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTS 58
MH + G G +LFL+ P Y W I + S+R +APDL G G +D+ ++
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYLW-RNIIPHVAPSHRCIAPDLIGMGKSDK-PDLDY 79
Query: 59 YTCFHV--IGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVFN 116
+ HV + I + L E++ +V HD G+ + R+K + + +
Sbjct: 80 FFDDHVRYLDAFIEALGL-----EEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRP 134
Query: 117 -PNTSEPGEIEAEFEQISTEIVIKEFLTLWTPD 148
P E E EQ E + F T D
Sbjct: 135 IPTWDEFHHTEVAEEQDHAEAARETFQAFRTAD 167
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 75/164 (45%), Gaps = 23/164 (14%)
Query: 2 HVAEKGQGPEILFLYVFPELRYSWCHQTI--ALASLSYRAVAPDLSGFGDTDELLEMTSY 59
++ E E +FL + E +S+ ++ + A R +APD GFG +D+ ++ Y
Sbjct: 38 YLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDY 97
Query: 60 TC-FH--VIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSV--- 113
T FH + LI +DL + +V D G ++ L + +R K L+ ++
Sbjct: 98 TFEFHRNFLLALIERLDL-----RNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLM 152
Query: 114 -------VFNPNTSEP--GEIEAEFEQIS-TEIVIKEFLTLWTP 147
F+ ++P G +++ ++ +++ + +F+ W P
Sbjct: 153 TDPVTQPAFSAFVTQPADGFTAWKYDLVTPSDLRLDQFMKRWAP 196
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 74/161 (45%), Gaps = 17/161 (10%)
Query: 2 HVAEKGQGPEILFLYVFPELRYSWCHQTI--ALASLSYRAVAPDLSGFGDTDELLEMTSY 59
++ E E +FL + E +S+ ++ + A R +APD GFG +D+ ++ Y
Sbjct: 38 YLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDY 97
Query: 60 TCFHVIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSV------ 113
T L+ LI+ + + + +V D G ++ L + +R K L+ ++
Sbjct: 98 TFEFHRNFLLALIERL--DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDP 155
Query: 114 ----VFNPNTSEP--GEIEAEFEQIS-TEIVIKEFLTLWTP 147
F+ ++P G +++ ++ +++ + +F+ W P
Sbjct: 156 VTQPAFSAFVTQPADGFTAYKYDLVTPSDLRLDQFMKRWAP 196
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 74/161 (45%), Gaps = 17/161 (10%)
Query: 2 HVAEKGQGPEILFLYVFPELRYSWCHQTI--ALASLSYRAVAPDLSGFGDTDELLEMTSY 59
++ E E +FL + E +S+ ++ + A R +APD GFG +D+ ++ Y
Sbjct: 38 YLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDY 97
Query: 60 TCFHVIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSV------ 113
T L+ LI+ + + + +V D G ++ L + +R K L+ ++
Sbjct: 98 TFEFHRNFLLALIERL--DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDP 155
Query: 114 ----VFNPNTSEP--GEIEAEFEQIS-TEIVIKEFLTLWTP 147
F+ ++P G +++ ++ +++ + +F+ W P
Sbjct: 156 VTQPAFSAFVTQPADGFTAWKYDLVTPSDLRLDQFMKRWAP 196
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 74/161 (45%), Gaps = 17/161 (10%)
Query: 2 HVAEKGQGPEILFLYVFPELRYSWCHQTI--ALASLSYRAVAPDLSGFGDTDELLEMTSY 59
++ E E +FL + E +S+ ++ + A R +APD GFG +D+ ++ Y
Sbjct: 38 YLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDY 97
Query: 60 TCFHVIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSV------ 113
T L+ LI+ + + + +V D G ++ L + +R K L+ ++
Sbjct: 98 TFEFHRNFLLALIERL--DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDP 155
Query: 114 ----VFNPNTSEP--GEIEAEFEQIS-TEIVIKEFLTLWTP 147
F+ ++P G +++ ++ +++ + +F+ W P
Sbjct: 156 VTQPAFSAFVTQPADGFTAWKYDLVTPSDLRLDQFMKRWAP 196
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 4 AEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYTCFH 63
+EK ++FL+ Y W H + ++ R + PDL G G + + SY
Sbjct: 38 SEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGN-GSYRLLD 95
Query: 64 VIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVFN--PNTSE 121
L +L+ +K+ VGHD G +A +RIKA+V++ V + + E
Sbjct: 96 HYKYLTAWFELLNL-PKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIESWDE 154
Query: 122 PGEIEAEFEQISTE 135
+IE + I +E
Sbjct: 155 WPDIEEDIALIKSE 168
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 9/146 (6%)
Query: 1 MHVAEKG--QGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTS 58
MH + G G +LFL+ P Y W I + S+R +APDL G G +D+ ++
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYLW-RNIIPHVAPSHRCIAPDLIGMGKSDK-PDLDY 79
Query: 59 YTCFHVIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVFN-P 117
+ HV L I+ V E++ +V HD G+ + R+K + + + P
Sbjct: 80 FFDDHV-RYLDAFIEAVG--LEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIP 136
Query: 118 NTSEPGEIEAE-FEQISTEIVIKEFL 142
E E E F+ T V +E +
Sbjct: 137 TWDEWPEFARETFQAFRTADVGRELI 162
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 4 AEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYTCFH 63
+EK ++FL+ Y W H + ++ R + PDL G G + + SY
Sbjct: 38 SEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGN-GSYRLLD 95
Query: 64 VIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVFN--PNTSE 121
L +L+ +K+ VGHD G +A +RIKA+V++ V + + E
Sbjct: 96 HYKYLTAWFELLNL-PKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIESWDE 154
Query: 122 PGEIEAEFEQISTE 135
+IE + I +E
Sbjct: 155 WPDIEEDIALIKSE 168
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 4 AEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYTCFH 63
+EK ++FL+ Y W H + ++ R + PDL G G + + SY
Sbjct: 39 SEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGN-GSYRLLD 96
Query: 64 VIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVFN--PNTSE 121
L +L+ +K+ VGHD G +A +RIKA+V++ V + + E
Sbjct: 97 HYKYLTAWFELLNL-PKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIESWDE 155
Query: 122 PGEIEAEFEQISTE 135
+IE + I +E
Sbjct: 156 WPDIEEDIALIKSE 169
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 84/206 (40%), Gaps = 20/206 (9%)
Query: 7 GQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFG-----DTDELLEMTSYTC 61
G GP +L L+ FP+ W H+ + ++ + DL G+G ++DE + T YT
Sbjct: 31 GDGPPLLLLHGFPQTHVMW-HRVAPKLAERFKVIVADLPGYGWSDMPESDE--QHTPYTK 87
Query: 62 FHVIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVFNPNTSE 121
+ LI ++ + + GH G ++ L L R+ L L ++ T E
Sbjct: 88 RAMAKQLIEAMEQL--GHVHFALAGHXRGARVSYRLALDSPGRLSKLAVLDIL---PTYE 142
Query: 122 PGEIEAEFEQISTEIVIKEFLTLWTPDPIILPKGKGYGQPPDAIIA-LPGWLSDEDVNTT 180
+++++ +K + + P LP+ G P + A L W D++
Sbjct: 143 ------YWQRMNRAYALKIYHWSFLAQPAPLPENLLGGDPDFYVKAKLASWTRAGDLSAF 196
Query: 181 RPIGTNYCDLTSVCGVKEYIHKGEFR 206
P + + ++ ++ ++R
Sbjct: 197 DPRAVEHYRIAFADPMRRHVMCEDYR 222
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 13/148 (8%)
Query: 1 MHVAEKG--QGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTS 58
MH + G G +LFL+ P Y W I + S+R +APDL G G +D+ ++
Sbjct: 19 MHYVDVGPRDGTPVLFLHGNPTSSYLW-RNIIPHVAPSHRCIAPDLIGMGKSDK-PDLDY 76
Query: 59 YTCFHV--IGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVFN 116
+ HV + I + L E++ +V HD G+ + R+K + + +
Sbjct: 77 FFDDHVRYLDAFIEALGL-----EEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRP 131
Query: 117 -PNTSEPGEIEAE-FEQISTEIVIKEFL 142
P E E E F+ T V +E +
Sbjct: 132 IPTWDEWPEFARETFQAFRTADVGRELI 159
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 4 AEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYTCFH 63
+EK ++FL+ Y W H + ++ R + PDL G G + + SY
Sbjct: 39 SEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGN-GSYRLLD 96
Query: 64 VIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVFN--PNTSE 121
L +L+ +K+ VGHD G +A +RIKA+V++ V + + E
Sbjct: 97 HYKYLTAWFELLNL-PKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIESWDE 155
Query: 122 PGEIEAEFEQISTE 135
+IE + I +E
Sbjct: 156 WPDIEEDIALIKSE 169
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 13/148 (8%)
Query: 1 MHVAEKG--QGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTS 58
MH + G G +LFL+ P Y W I + S+R +APDL G G +D+ ++
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYLW-RNIIPHVAPSHRCIAPDLIGMGKSDK-PDLDY 79
Query: 59 YTCFHV--IGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVFN 116
+ HV + I + L E++ +V HD G+ + R+K + + +
Sbjct: 80 FFDDHVRYLDAFIEALGL-----EEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRP 134
Query: 117 -PNTSEPGEIEAE-FEQISTEIVIKEFL 142
P E E E F+ T V +E +
Sbjct: 135 IPTWDEWPEFARETFQAFRTADVGRELI 162
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 13/148 (8%)
Query: 1 MHVAEKG--QGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTS 58
MH + G G +LFL+ P Y W I + S+R +APDL G G +D+ ++
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYLW-RNIIPHVAPSHRCIAPDLIGMGKSDK-PDLDY 79
Query: 59 YTCFHV--IGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVFN 116
+ HV + I + L E++ +V HD G+ + R+K + + +
Sbjct: 80 FFDDHVRYLDAFIEALGL-----EEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRP 134
Query: 117 -PNTSEPGEIEAE-FEQISTEIVIKEFL 142
P E E E F+ T V +E +
Sbjct: 135 IPTWDEWPEFARETFQAFRTADVGRELI 162
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 13/148 (8%)
Query: 1 MHVAEKG--QGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTS 58
MH + G G +LFL+ P Y W I + S+R +APDL G G +D+ ++
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYLW-RNIIPHVAPSHRCIAPDLIGMGKSDK-PDLDY 79
Query: 59 YTCFHV--IGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVFN 116
+ HV + I + L E++ +V HD G+ + R+K + + +
Sbjct: 80 FFDDHVRYLDAFIEALGL-----EEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRP 134
Query: 117 -PNTSEPGEIEAE-FEQISTEIVIKEFL 142
P E E E F+ T V +E +
Sbjct: 135 FPTWDEWPEFARETFQAFRTADVGRELI 162
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 13/148 (8%)
Query: 1 MHVAEKG--QGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTS 58
MH + G G +LFL+ P Y W I + S+R +APDL G G +D+ ++
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYLW-RNIIPHVAPSHRCIAPDLIGMGKSDK-PDLDY 79
Query: 59 YTCFHV--IGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVFN 116
+ HV + I + L E++ +V HD G+ + R+K + + +
Sbjct: 80 FFDDHVRYLDAFIEALGL-----EEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRP 134
Query: 117 -PNTSEPGEIEAE-FEQISTEIVIKEFL 142
P E E E F+ T V +E +
Sbjct: 135 FPTWDEWPEFARETFQAFRTADVGRELI 162
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYT 60
++ + G G ++ ++ +P SW +Q AL YR + D GFG + + E Y
Sbjct: 19 IYYEDHGTGKPVVLIHGWPLSGRSWEYQVPALVEAGYRVITYDRRGFGKSSQPWEGYEYD 78
Query: 61 CF 62
F
Sbjct: 79 TF 80
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 13/148 (8%)
Query: 1 MHVAEKG--QGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTS 58
MH + G G +LFL+ P Y W I + S+R +APDL G G +D+ ++
Sbjct: 19 MHYVDVGPRDGTPVLFLHGNPTSSYLW-RNIIPHVAPSHRCIAPDLIGMGKSDK-PDLDY 76
Query: 59 YTCFHV--IGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVFN 116
+ HV + I + L E++ +V HD G+ + R+K + + +
Sbjct: 77 FFDDHVRYLDAFIEALGL-----EEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRP 131
Query: 117 -PNTSEPGEIEAE-FEQISTEIVIKEFL 142
P E E E F+ T V +E +
Sbjct: 132 FPTWDEWPEFARETFQAFRTADVGRELI 159
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 13/148 (8%)
Query: 1 MHVAEKG--QGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTS 58
MH + G G +LFL+ P Y W I + S+R +APDL G G +D+ ++
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYLW-RNIIPHVAPSHRCIAPDLIGMGKSDK-PDLDY 79
Query: 59 YTCFHV--IGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVFN 116
+ HV + I + L E++ +V HD G+ + R+K + + +
Sbjct: 80 FFDDHVRYLDAFIEALGL-----EEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRP 134
Query: 117 -PNTSEPGEIEAE-FEQISTEIVIKEFL 142
P E E E F+ T V +E +
Sbjct: 135 FPTWDEWPEFARETFQAFRTADVGRELI 162
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 13/148 (8%)
Query: 1 MHVAEKG--QGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTS 58
MH + G G +LFL+ P Y W I + S+R +APDL G G +D+ ++
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYLW-RNIIPHVAPSHRCIAPDLIGMGKSDK-PDLDY 79
Query: 59 YTCFHV--IGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVFN 116
+ HV + I + L E++ +V HD G+ + R+K + + +
Sbjct: 80 FFDDHVRYLDAFIEALGL-----EEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRP 134
Query: 117 -PNTSEPGEIEAE-FEQISTEIVIKEFL 142
P E E E F+ T V +E +
Sbjct: 135 IPTWDEWPEFARELFQAFRTADVGRELI 162
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYT 60
++ + G G +LF + + W +Q L+S YR +A D GFG +D+ Y
Sbjct: 11 IYFKDWGSGKPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYD 70
Query: 61 CF-HVIGDLIGLIDLVAPNDEKMFVVGHD-SGTYMACFLCLFRANRIKALVNLSVV 114
F I LI +DL +++ +VG G +A ++ + R+ LV L V
Sbjct: 71 TFADDIAQLIEHLDL-----KEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAV 121
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYT 60
++ + G G +LF + + W +Q L+S YR +A D GFG +D+ Y
Sbjct: 11 IYFKDWGSGKPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYD 70
Query: 61 CF-HVIGDLIGLIDLVAPNDEKMFVVGHD-SGTYMACFLCLFRANRIKALVNLSVV 114
F I LI +DL +++ +VG G +A ++ + R+ LV L V
Sbjct: 71 TFADDIAQLIEHLDL-----KEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAV 121
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYT 60
++ + G G +LF + + W +Q L+S YR +A D GFG +D+ Y
Sbjct: 11 IYFKDWGSGKPVLFSHGWILDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYD 70
Query: 61 CF-HVIGDLIGLIDLVAPNDEKMFVVGHD-SGTYMACFLCLFRANRIKALVNLSVV 114
F I LI +DL +++ +VG G +A ++ + R+ LV L V
Sbjct: 71 TFADDIAQLIEHLDL-----KEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAV 121
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 11/139 (7%)
Query: 9 GPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYTCFHVIGDL 68
P +LFL+ P + W + L S +APDL GFG + + +Y F + L
Sbjct: 29 APVVLFLHGNPTSSHIW-RNILPLVSPVAHCIAPDLIGFGQSGK--PDIAYRFFDHVRYL 85
Query: 69 IGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVFNPNTSEPGEIEAE 128
I+ ++V D GT +A L R + ++ L + + P +
Sbjct: 86 DAFIEQRGVT--SAYLVAQDWGTALAFHLAARRPDFVRGLAFMEFI------RPMPTWQD 137
Query: 129 FEQISTEIVIKEFLTLWTP 147
F Q E F TP
Sbjct: 138 FHQDHAEAARAVFRKFRTP 156
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 7 GQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELL---EMTSYTCFH 63
G GP +L L+ FP+ + W LA+ Y V DL G+G + + + + +Y+
Sbjct: 23 GSGPALLLLHGFPQNLHMWARVAPLLAN-EYTVVCADLRGYGGSSKPVGAPDHANYSFRA 81
Query: 64 VIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVV 114
+ D L+ + E+ +VGH G + L + + +L L ++
Sbjct: 82 MASDQRELMRTL--GFERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDII 130
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 33.9 bits (76), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 1 MHVAEKG-QGPEILFLYVFPELRYSWCHQTI--ALASLSYRAVAPDLSGFGDTDELLEMT 57
MH ++G + E FL + E +S+ ++ + + R VAPDL GFG +D+ +
Sbjct: 35 MHYVDEGPRDAEHTFLCLHGEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKPTDDA 94
Query: 58 SYTCFHVIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVFNP 117
YT L+ +D A E++ +V D G + L + R + L+ ++
Sbjct: 95 VYTFGFHRRSLLAFLD--ALQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTALAV 152
Query: 118 NTSEPGE 124
S PG+
Sbjct: 153 GLS-PGK 158
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 32/161 (19%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 2 HVAEKGQGPEILFLYVFPELRYSWCHQTI--ALASLSYRAVAPDLSGFGDTDELLEMTSY 59
++ E E +FL + E +S+ ++ + A R +APD GFG +D+ ++ Y
Sbjct: 38 YLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDY 97
Query: 60 TCFHVIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSV------ 113
T L+ LI+ + + + +V G ++ L + +R K L+ ++
Sbjct: 98 TFEFHRNFLLALIERL--DLRNITLVVQXWGGFLGLTLPMADPSRFKRLIIMNACLMTDP 155
Query: 114 ----VFNPNTSEP--GEIEAEFEQIS-TEIVIKEFLTLWTP 147
F+ ++P G +++ ++ +++ + +F+ W P
Sbjct: 156 VTQPAFSAFVTQPADGFTAWKYDLVTPSDLRLDQFMKRWAP 196
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 6/140 (4%)
Query: 9 GPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYTCFHVIGDL 68
P +LFL+ P + W + L S +APDL GFG + + +Y F + L
Sbjct: 29 APVVLFLHGNPTSSHIW-RNILPLVSPVAHCIAPDLIGFGQSGK--PDIAYRFFDHVRYL 85
Query: 69 IGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVF-NPNTSEPGEIEA 127
I+ ++V D GT +A L R + ++ L + + P + E
Sbjct: 86 DAFIEQRGVT--SAYLVAQDWGTALAFHLAARRPDFVRGLAFMEFIRPMPTWQDFHHTEV 143
Query: 128 EFEQISTEIVIKEFLTLWTP 147
EQ E F TP
Sbjct: 144 AEEQDHAEAARAVFRKFRTP 163
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 6/140 (4%)
Query: 9 GPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYTCFHVIGDL 68
P +LFL+ P + W + L S +APDL GFG + + +Y F + L
Sbjct: 29 APVVLFLHGNPTSSHIW-RNILPLVSPVAHCIAPDLIGFGQSGK--PDIAYRFFDHVRYL 85
Query: 69 IGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVF-NPNTSEPGEIEA 127
I+ ++V D GT +A L R + ++ L + + P + E
Sbjct: 86 DAFIEQRGVT--SAYLVAQDWGTALAFHLAARRPDFVRGLAFMEFIRPMPTWQDFHHTEV 143
Query: 128 EFEQISTEIVIKEFLTLWTP 147
EQ E F TP
Sbjct: 144 AEEQDHAEAARAVFRKFRTP 163
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 7 GQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYTCF 62
GQG ++F++ +P +W Q A+ YR +A D G G + + + + F
Sbjct: 17 GQGRPVVFIHGWPLNGDAWQDQLKAVVDAGYRGIAHDRRGHGHSTPVWDGYDFDTF 72
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYT 60
++ + G G I+F + +P SW Q I LA+ YR +A D G G + +
Sbjct: 11 IYYKDWGSGQPIVFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHGRSSQPWSGNDMD 70
Query: 61 CFHVIGDLIGLIDLVAPNDEKMF 83
+ DL LI+ + D +F
Sbjct: 71 TY--ADDLAQLIEHLDLRDAVLF 91
>pdb|1IZ7|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26 At
1.6 A Resolution
pdb|1IZ8|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26
With 1,3-Propanediol, A Product Of Debromidation Of
Dibrompropane, At 2.0a Resolution
pdb|1K5P|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.8a Resolution
pdb|1K63|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis With Ut26
2-Bromo-2-Propene-1-Ol At 1.8a Resolution
pdb|1K6E|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 With 1,2-Propanediol
(Product Of Dehalogenation Of 1,2-Dibromopropane) At
1.85a
Length = 295
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDEL----LEM 56
M ++G G ILF + P Y W + A L R +A DL G GD+D+L E
Sbjct: 20 MAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGDSDKLDPSGPER 78
Query: 57 TSYTCFHVIGD-LIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVF 115
+Y D L +DL +++ +V HD G+ + R++ + + +
Sbjct: 79 YAYAEHRDYLDALWEALDL----GDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIA 134
Query: 116 NP 117
P
Sbjct: 135 MP 136
>pdb|1G5F|A Chain A, Structure Of Linb Complexed With 1,2-Dichloroethane
pdb|1G4H|A Chain A, Linb Complexed With Butan-1-Ol
pdb|1G42|A Chain A, Structure Of 1,3,4,6-Tetrachloro-1,4-Cyclohexadiene
Hydrolase (Linb) From Sphingomonas Paucimobilis
Complexed With 1,2-Dichloropropane
Length = 296
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDEL----LEM 56
M ++G G ILF + P Y W + A L R +A DL G GD+D+L E
Sbjct: 21 MAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGDSDKLDPSGPER 79
Query: 57 TSYTCFHVIGD-LIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVF 115
+Y D L +DL +++ +V HD G+ + R++ + + +
Sbjct: 80 YAYAEHRDYLDALWEALDL----GDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIA 135
Query: 116 NP 117
P
Sbjct: 136 MP 137
>pdb|1MJ5|A Chain A, Linb (Haloalkane Dehalogenase) From Sphingomonas
Paucimobilis Ut26 At Atomic Resolution
Length = 302
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDEL----LEM 56
M ++G G ILF + P Y W + A L R +A DL G GD+D+L E
Sbjct: 21 MAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGDSDKLDPSGPER 79
Query: 57 TSYTCFHVIGD-LIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVF 115
+Y D L +DL +++ +V HD G+ + R++ + + +
Sbjct: 80 YAYAEHRDYLDALWEALDL----GDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIA 135
Query: 116 NP 117
P
Sbjct: 136 MP 137
>pdb|1CV2|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.6 A Resolution
pdb|1D07|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 With 1,3-Propanediol, A Product Of
Debromidation Of Dibrompropane, At 2.0a Resolution
pdb|2BFN|A Chain A, The Crystal Structure Of The Complex Of The Haloalkane
Dehalogenase Linb With The Product Of Dehalogenation
Reaction 1,2-Dichloropropane
Length = 296
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Query: 1 MHVAEKGQGPEILFLYVFPELRYSWCHQTIALASLSYRAVAPDLSGFGDTDEL----LEM 56
M ++G G ILF + P Y W + A L R +A DL G GD+D+L E
Sbjct: 21 MAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGDSDKLDPSGPER 79
Query: 57 TSYTCFHVIGD-LIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALVNLSVVF 115
+Y D L +DL +++ +V HD G+ + R++ + + +
Sbjct: 80 YAYAEHRDYLDALWEALDL----GDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIA 135
Query: 116 NP 117
P
Sbjct: 136 MP 137
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 32 LASLSYRAVAPDLSGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPND--EKMFVVGHDS 89
L + + D+ G G +D E +T F + +++ ++D D +++ GH
Sbjct: 52 LNEIGVATLRADMYGHGKSDGKFE--DHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQ 109
Query: 90 GTYMACFLCLFRANRIKALVNLS-VVFNPNTSEPGEI 125
G + IKAL+ LS P + GE+
Sbjct: 110 GGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGEL 146
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 5 EKGQGPEILFLYVFPELRY---SWCHQTIALASLSYRAVAPDLSGFGDTDE-LLEMTSYT 60
E G+G ++ ++ +W I + + YR +A D+ GFG T + +E T
Sbjct: 32 EAGKGQPVILIHGGGAGAESEGNW-RNVIPILARHYRVIAMDMLGFGKTAKPDIEYTQDR 90
Query: 61 CFHVIGDLIGLIDLVAPNDEKMFVVGHDSGTYMACFLCLFRANRIKALV 109
+ D I ++ D K+ +VG+ G + + + + ALV
Sbjct: 91 RIRHLHDFIKAMNF----DGKVSIVGNSMGGATGLGVSVLHSELVNALV 135
>pdb|3CMQ|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanine
Trna Synthetase
pdb|3HFV|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanyl-Trna
Synthetase Complexed With M-Tyrosine
pdb|3TEG|A Chain A, Bacterial And Eukaryotic Phenylalanyl-Trna Synthetases
Catalyze Misaminoacylation Of Trnaphe With
3,4-Dihydroxy-L-Phenylalanine (L- Dopa)
pdb|3TUP|A Chain A, Crystal Structure Of Human Mitochondrial Phers Complexed
With Trnaphe In The Active Open State
Length = 415
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 16/79 (20%)
Query: 13 LFLYVFPELRYSWC--------------HQTIALASLS-YRAVAPDLSGFGDTDELLEMT 57
+ LY P++R WC +Q + LS Y AV D+S + ++ E
Sbjct: 285 MILYDIPDIRLFWCEDERFLKQFCVSNINQKVKFQPLSKYPAVINDISFWLPSENYAEND 344
Query: 58 SYTCFHVI-GDLIGLIDLV 75
Y I GDL+ +DL+
Sbjct: 345 FYDLVRTIGGDLVEKVDLI 363
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 5 EKGQGPEILFLYVFPELRYSW-CHQTIALASLSYRAVAPDLSGFGDTDELLEMTSYTCFH 63
+ G G ++F+ +W HQ A + YR + D G G T+ T+ T
Sbjct: 39 DNGTGDPVVFIAGRGGAGRTWHPHQVPAFLAAGYRCITFDNRGIGATENAEGFTTQTMVA 98
Query: 64 VIGDLIGLIDLVAPNDEKMFVVGHDSGTYMA 94
LI +D +AP VVG G ++A
Sbjct: 99 DTAALIETLD-IAPAR----VVGVSMGAFIA 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,829,667
Number of Sequences: 62578
Number of extensions: 381819
Number of successful extensions: 790
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 741
Number of HSP's gapped (non-prelim): 88
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)