BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045863
(537 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O07187|Y2685_MYCTU Uncharacterized transporter Rv2685/MT2759 OS=Mycobacterium
tuberculosis GN=Rv2685 PE=3 SV=1
Length = 428
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 154/358 (43%), Gaps = 54/358 (15%)
Query: 207 EIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRK---PRTLLWVIGFVTFFLSSILDNLTS 263
+++F LLG M IV ++ F+ V R P ++ ++ VT S++LDN+T+
Sbjct: 56 DVIFLLLGMMIIVSVLRHTGVFEYVAIWAVKRANAAPLRIMILLVLVTALGSALLDNVTT 115
Query: 264 TIVM--VSLL---RKLVPPSEYRKLLGAVVVIAANAGGAWTPIGDVTTTMLWIHGQISTL 318
+++ V+LL R V + + V A+N GGA T +GD ++ +
Sbjct: 116 VLLIAPVTLLVCDRLGVNSTPFL----VAEVFASNVGGAATLVGDPPNIIIASRAGL--- 168
Query: 319 PTMKSLFIPSAVS-LAVPLAFLSLT----SEVNGKGQESSNVLA---SEQMAPRGQLVFA 370
T I A + L V +A + L V + ++VL+ E + RG L+
Sbjct: 169 -TFNDFLIHMAPAVLVVMIALIGLLPWLLGSVTAEPDRVADVLSLNEREAIHDRGLLIKC 227
Query: 371 VGIGALIFVPVFKALTGLP-----PYMGILLGLGVLWILTDAIHYGESERQKLKVPQALS 425
++ V VF A P P + LLG GVL + + ER LS
Sbjct: 228 ----GVVLVLVFAAFIAHPVLHIQPSLVALLGAGVL------VRFSGLERSDY-----LS 272
Query: 426 RIDTQGALFFLGILLSVSSLEAAGLLREIANYLDA-----HISNIDLIASAIGVVSAVID 480
++ LFF G+ + V +L G++ ++A + + LI VS +ID
Sbjct: 273 SVEWDTLLFFAGLFVMVGALVKTGVVEQLARAATELTGGNELLTVGLILGISAPVSGIID 332
Query: 481 NVPLVAATMGMYD--LTSFP---QDSKFWQLIAYCAGTGGSMLIIGSAAGVAFMGMEK 533
N+P VA + + + P FW +A A GG++ + ++A V +G+ +
Sbjct: 333 NIPYVATMTPIVTELVAAMPGHVHPDTFWWALALSADFGGNLTAVAASANVVMLGIAR 390
>sp|P0A607|Y2703_MYCBO Uncharacterized transporter Mb2703 OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=Mb2703 PE=3 SV=1
Length = 429
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 167/364 (45%), Gaps = 66/364 (18%)
Query: 207 EIVFFLLGAMTIVEIVDAHQGFKLVTDNITTR---KPRTLLWVIGFVTFFLSSILDNLTS 263
+++F L+G M IV ++ F+ R P ++ ++ V+ S++LDN+T+
Sbjct: 56 DVIFLLVGMMIIVGVLRQTGVFEYTAIWAAKRARGSPLRIMILLVLVSALASALLDNVTT 115
Query: 264 TIVM--VSLL---RKLVPPSEYRKLLGAVVVIAANAGGAWTPIGDVTTTMLWIHGQISTL 318
+++ V+LL R + + + L+ V A+N GGA T +GD ++ ++
Sbjct: 116 VLLIAPVTLLVCDRLNINTTSF--LMAEV--FASNIGGAATLVGDPPNIIVASRAGLTFN 171
Query: 319 PTMKSL-----FIPSAVSLAVPLAFLSLTSEVNGKGQESSNVLA---SEQMAPRGQLVFA 370
M L + A+ +P F S+T E + ++V+A E + RG LV
Sbjct: 172 DFMLHLTPLVVIVLIALIAVLPRLFGSITVEAD----RIADVMALDEGEAIRDRGLLV-- 225
Query: 371 VGIGALIFVPVFKALTGLP-----PYMGILLGLGVLWILTDAIHYGESERQKLKVPQALS 425
GA + V VF A P P + LLG G+L +++ L + LS
Sbjct: 226 -KCGA-VLVLVFAAFVAHPVLHIQPSLVALLGAGMLIVVS-----------GLTRSEYLS 272
Query: 426 RIDTQGALFFLGILLSVSSLEAAGLLREIANYLDAHISNIDLIASA---IGV---VSAVI 479
++ LFF G+ + V +L G++ ++A ++ +++A+A +GV +S +I
Sbjct: 273 SVEWDTLLFFAGLFIMVGALVKTGVVNDLARA-ATQLTGGNIVATAFLILGVSAPISGII 331
Query: 480 DNVPLVA----------ATMGMYDLTSFPQDSKFWQLIAYCAGTGGSMLIIGSAAGVAFM 529
DN+P VA A MG T P W +A A GG++ IG++A V +
Sbjct: 332 DNIPYVATMTPLVAELVAVMGGQPSTDTP-----WWALALGADFGGNLTAIGASANVVML 386
Query: 530 GMEK 533
G+ +
Sbjct: 387 GIAR 390
>sp|P0A606|Y2684_MYCTU Uncharacterized transporter Rv2684/MT2758 OS=Mycobacterium
tuberculosis GN=Rv2684 PE=3 SV=1
Length = 429
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 167/364 (45%), Gaps = 66/364 (18%)
Query: 207 EIVFFLLGAMTIVEIVDAHQGFKLVTDNITTR---KPRTLLWVIGFVTFFLSSILDNLTS 263
+++F L+G M IV ++ F+ R P ++ ++ V+ S++LDN+T+
Sbjct: 56 DVIFLLVGMMIIVGVLRQTGVFEYTAIWAAKRARGSPLRIMILLVLVSALASALLDNVTT 115
Query: 264 TIVM--VSLL---RKLVPPSEYRKLLGAVVVIAANAGGAWTPIGDVTTTMLWIHGQISTL 318
+++ V+LL R + + + L+ V A+N GGA T +GD ++ ++
Sbjct: 116 VLLIAPVTLLVCDRLNINTTSF--LMAEV--FASNIGGAATLVGDPPNIIVASRAGLTFN 171
Query: 319 PTMKSL-----FIPSAVSLAVPLAFLSLTSEVNGKGQESSNVLA---SEQMAPRGQLVFA 370
M L + A+ +P F S+T E + ++V+A E + RG LV
Sbjct: 172 DFMLHLTPLVVIVLIALIAVLPRLFGSITVEAD----RIADVMALDEGEAIRDRGLLV-- 225
Query: 371 VGIGALIFVPVFKALTGLP-----PYMGILLGLGVLWILTDAIHYGESERQKLKVPQALS 425
GA + V VF A P P + LLG G+L +++ L + LS
Sbjct: 226 -KCGA-VLVLVFAAFVAHPVLHIQPSLVALLGAGMLIVVS-----------GLTRSEYLS 272
Query: 426 RIDTQGALFFLGILLSVSSLEAAGLLREIANYLDAHISNIDLIASA---IGV---VSAVI 479
++ LFF G+ + V +L G++ ++A ++ +++A+A +GV +S +I
Sbjct: 273 SVEWDTLLFFAGLFIMVGALVKTGVVNDLARA-ATQLTGGNIVATAFLILGVSAPISGII 331
Query: 480 DNVPLVA----------ATMGMYDLTSFPQDSKFWQLIAYCAGTGGSMLIIGSAAGVAFM 529
DN+P VA A MG T P W +A A GG++ IG++A V +
Sbjct: 332 DNIPYVATMTPLVAELVAVMGGQPSTDTP-----WWALALGADFGGNLTAIGASANVVML 386
Query: 530 GMEK 533
G+ +
Sbjct: 387 GIAR 390
>sp|O59712|YBH4_SCHPO Uncharacterized transporter C3B8.04c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC3B8.04c PE=3 SV=1
Length = 867
Score = 42.0 bits (97), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 209 VFFLLGAMTIVEIVDAHQGFKLVTDNITT---RKPRTLLWVIGFVTFFLSSILDNLTSTI 265
+ LLG TI + + K + +I RKPR++L FV F S + N+ + +
Sbjct: 495 IVLLLGGFTIAAALSKYHIAKRLATSILAHAGRKPRSVLLTNMFVAMFASMWISNVAAPV 554
Query: 266 VMVS----LLRKLVPPSEYRKLLGAVVVIAANAGGAWTPI 301
+ S LLR L S++ K+L + +A+N GG +PI
Sbjct: 555 LCFSIIQPLLRNLPAESDFAKILIVGIALASNVGGIASPI 594
>sp|P46838|AG45_MYCLE 46 kDa membrane protein OS=Mycobacterium leprae (strain TN) GN=ag45
PE=3 SV=2
Length = 429
Score = 40.4 bits (93), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 157/354 (44%), Gaps = 45/354 (12%)
Query: 207 EIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRTLLWVIGFVTFFL---SSILDNLTS 263
E++F LL M IV ++ F+ V R + L ++ + + S++LDN+T+
Sbjct: 56 EVIFLLLSMMIIVSVLRQTGVFEYVAIWTAKRSHGSPLRILLLLVLVMALGSALLDNVTT 115
Query: 264 TIVM--VSLL---RKLVPPSEYRKLLGAVVVIAANAGGAWTPIGDVTTTMLWIHGQIST- 317
+++ V+LL R + + + L+ V A+N GGA T +GD ++ S
Sbjct: 116 VLLIAPVTLLVCERLTINAAPF--LMAEV--FASNIGGAATLVGDPPNIIIASRAGFSFN 171
Query: 318 --LPTMKSLFIPSAVSLAVPLAFLSLTSEVNGKGQESSNVLASEQMAPRGQ-LVFAVGIG 374
L + + I V L+ L L + + + + +E+ A R + L+ G+
Sbjct: 172 DFLIHLTPIVIIVTVVLSALLPRLFRGAFAVDPERVADIMSLNEREAIRDRWLLIKCGVV 231
Query: 375 ALIFVPVFKALTGLP-----PYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRIDT 429
L+ VF A P P + +LG G+L +++ KL+ LS +
Sbjct: 232 LLL---VFVAFIAHPVLHTGPSLVGMLGAGILIVIS-----------KLERSDYLSSVKW 277
Query: 430 QGALFFLGILLSVSSLEAAGLLREIANYLDAHISNIDL--IASAIGV---VSAVIDNVPL 484
+ LFF G+ + V +L ++ ++A +L + +GV VS++IDN+P
Sbjct: 278 ETLLFFAGLFIMVGALVKTDVVNQLARATTTLTGGHELLTVVLTLGVSTLVSSIIDNIPY 337
Query: 485 VAATMGMYD--LTSFPQDSK---FWQLIAYCAGTGGSMLIIGSAAGVAFMGMEK 533
VA + + S P S W +A A GG++ +G++A V + + K
Sbjct: 338 VATMTPIVSELVASMPDQSHTDILWWALALGADFGGNLTAVGASANVVMLEIAK 391
>sp|P27514|PHO91_YEAST Low-affinity phosphate transporter PHO91 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PHO91 PE=1
SV=2
Length = 894
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 206 SEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTR---KPRTLLWVIGFVTFFLSSILDNLT 262
S ++ LLG T+ + + K+++ +I P +L FV F+S + N+
Sbjct: 518 SSVIMLLLGGFTLAAALSKYNIAKVLSTHILASAGTNPHFILLTNMFVALFVSMWVSNVA 577
Query: 263 STIVMVS----LLRKLVPPSEYRKLLGAVVVIAANAGGAWTPIG 302
+ ++ S LLR L Y K L + +A+N GG +PI
Sbjct: 578 APVLCYSIVQPLLRTLPRNCSYAKALILGIALASNIGGMSSPIA 621
>sp|Q7VF76|SYD_HELHP Aspartate--tRNA ligase OS=Helicobacter hepaticus (strain ATCC 51449
/ 3B1) GN=aspS PE=3 SV=1
Length = 581
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 191 TEIAVSEL-SRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTD-NITTRKPRTLLWVIG 248
+E A++EL SR AEV +I+FF GA IV K+ D + LWV+
Sbjct: 371 SESALNELVSRVKAEVGDIIFFGAGAKKIVWDYMGRLRLKVAEDMKLINENEYKFLWVVD 430
Query: 249 FVTF 252
F F
Sbjct: 431 FPMF 434
>sp|P39535|PHO90_YEAST Low-affinity phosphate transporter PHO90 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PHO90 PE=1
SV=1
Length = 881
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 239 KPRTLLWVIGFVTFFLSSILDNLTSTIVMVSLLRKLVP----PSEYRKLLGAVVVIAANA 294
KPR +L + V FFLS + N+ + ++ SLL L+ S + + L V +AAN
Sbjct: 535 KPRNVLLMAMCVVFFLSMWISNVAAPVLTYSLLSPLLDAMDADSPFAQALVLGVALAANI 594
Query: 295 GGAWTPI 301
GG +PI
Sbjct: 595 GGMSSPI 601
>sp|C6E2H7|ERA_GEOSM GTPase Era OS=Geobacter sp. (strain M21) GN=era PE=3 SV=1
Length = 297
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Query: 400 VLWILTDAIHYGESERQKLKVPQALSRIDTQGALFFLGILLSVSSLEAAGLLREIANYLD 459
+++I T IH +S K V +ALS + + FL + +V + AG+++E+ + +D
Sbjct: 58 IVFIDTPGIHRAKSRLNKFMVDEALSSVQGVDLILFL-VDGAVDPEKEAGMIKEVLSGVD 116
Query: 460 AHISNIDLIASAIGVVSAVIDNVPLVAATMGMYDLTSFPQDSKFWQLIAYCAGTG 514
A V V++ + LV + ++ + F ++I AGTG
Sbjct: 117 AP-------------VILVMNKIDLVPKGELLERMSCYGDTYPFKEIIPVSAGTG 158
>sp|P15878|QCRB_MYCLE Ubiquinol-cytochrome c reductase cytochrome b subunit
OS=Mycobacterium leprae (strain TN) GN=qcrB PE=3 SV=3
Length = 551
Score = 33.5 bits (75), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 88/235 (37%), Gaps = 58/235 (24%)
Query: 197 ELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITT-----------RKPRTLLW 245
E+SRA +I F + G + + +I H + T I R+PR W
Sbjct: 88 EMSRAYQSTLDISFEVRGGLFVRQI--HHWAALMFTAAIMVHLARIFFTGAFRRPRETNW 145
Query: 246 VIG--------FVTFFLSSILDNLTSTIVMVSLLRKLVPPSEYRKLLGAVVVIAANAGGA 297
VIG F +F S+ D+L S I + + L + LG V+ G
Sbjct: 146 VIGSLLLILAMFEGYFGYSMPDDLLSGIGLRAALSSIT--------LGIPVI------GT 191
Query: 298 WTPI----GDVTTTMLWIHGQISTLPTMKSLFIPSA----VSLAVPLAFLSLTSEVNGKG 349
W GD T+L I L + L IP + L + L + ++ G G
Sbjct: 192 WLHWALFGGDFPGTIL-----IPRLYALHILLIPGVILALIGLHLALVWFQKHTQFPGPG 246
Query: 350 QESSNVLASEQMAPRGQLVFAVGIGALIFVPVFKALTGLPPYMGILLGLGVLWIL 404
+ NV+ M VFA GA F A+ G+ MG L + +W L
Sbjct: 247 RTEYNVVGVRVMP-----VFAFKSGAF-----FAAIVGVLGLMGGFLQINPIWNL 291
>sp|A2X6E6|SUT5_ORYSI Sucrose transport protein SUT5 OS=Oryza sativa subsp. indica
GN=SUT5 PE=3 SV=1
Length = 535
Score = 33.1 bits (74), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 21/125 (16%)
Query: 372 GIGALIFVPVFKALTGLPPYMGILLGL-GVLWI------------LTDAIHYGESE--RQ 416
G G +FV +FK+L LPP M +L + V W+ + I++GE +
Sbjct: 285 GGGCAVFVDLFKSLRNLPPAMFKVLAVTAVTWLSWFPFIQYNTDWMGREIYHGEPQGTAA 344
Query: 417 KLKVPQALSRIDTQGALFFLGILLSVSSLEAAGLLREIANYLDAHISNIDLIA-----SA 471
K V A R G L F + L V+S L R + + + ISN + A A
Sbjct: 345 KADVYDAGVREGAMG-LLFCSVALGVTSFVIPKLCRRLTSKVVWSISNFLVFALMAVMVA 403
Query: 472 IGVVS 476
+G+VS
Sbjct: 404 VGMVS 408
>sp|Q04671|P_HUMAN P protein OS=Homo sapiens GN=OCA2 PE=1 SV=2
Length = 838
Score = 33.1 bits (74), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 90/206 (43%), Gaps = 33/206 (16%)
Query: 344 EVNGKGQESSNVLASEQMAPRGQLVFAVGIGALIFVPVFKALTGLPPYMGILLGLGVLWI 403
E+ K + S +L ++ + G ++F + + FVP G+ +G + LG +W+
Sbjct: 610 ELQKKHRISDGILLAKCLTVLGFVIFMFFLNS--FVP------GIHLDLGWIAILGAIWL 661
Query: 404 LTDA-IHYGESERQKLKVPQALSRIDTQGALFFLGILLSVSSL----------EAAGLLR 452
L A IH E L R++ LFF + + + +L E LL
Sbjct: 662 LILADIHDFEI---------ILHRVEWATLLFFAALFVLMEALAHLHLIEYVGEQTALLI 712
Query: 453 EIANYLDAHISNIDLIASAIGVVSAVIDNVPLVAATMG-MYDLTSFPQ----DSKFWQLI 507
++ I+ I L+ + S++IDN+P A + + +L+ P+ +
Sbjct: 713 KMVPEEQRLIAAIVLVVWVSALASSLIDNIPFTATMIPVLLNLSHDPEVGLPAPPLMYAL 772
Query: 508 AYCAGTGGSMLIIGSAAGVAFMGMEK 533
A+ A GG+ +IG++A V G+ +
Sbjct: 773 AFGACLGGNGTLIGASANVVCAGIAE 798
>sp|Q69JW3|SUT5_ORYSJ Sucrose transport protein SUT5 OS=Oryza sativa subsp. japonica
GN=SUT5 PE=1 SV=1
Length = 535
Score = 33.1 bits (74), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 21/125 (16%)
Query: 372 GIGALIFVPVFKALTGLPPYMGILLGL-GVLWI------------LTDAIHYGESE--RQ 416
G G +FV +FK+L LPP M +L + V W+ + I++GE +
Sbjct: 285 GGGCAVFVDLFKSLRNLPPAMFKVLAVTAVTWLSWFPFIQYNTDWMGREIYHGEPQGTAA 344
Query: 417 KLKVPQALSRIDTQGALFFLGILLSVSSLEAAGLLREIANYLDAHISNIDLIA-----SA 471
K V A R G L F + L V+S L R + + + ISN + A A
Sbjct: 345 KADVYDAGVREGAMG-LLFCSVALGVTSFVIPKLCRRLTSKVVWSISNFLVFALMAVMVA 403
Query: 472 IGVVS 476
+G+VS
Sbjct: 404 VGMVS 408
>sp|Q39593|SAC1_CHLRE Putative sulfur deprivation response regulator OS=Chlamydomonas
reinhardtii GN=SAC1 PE=2 SV=1
Length = 585
Score = 32.7 bits (73), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 452 REIANYLDAHISNIDLIASAIGVVSAVIDNVPLVAATMGMYD---LTSFPQDSKFWQLIA 508
RE L HI A+ VSAV++N PLVA + + + + S+F ++
Sbjct: 71 REWVGQLRMHI--------AVASVSAVMNNTPLVAVMIPVVESWCRNNNHHPSRFMMPLS 122
Query: 509 YCAGTGGSMLIIGSAAGVAFMGMEKVD 535
Y A GG IIG++ + G+ + D
Sbjct: 123 YSAILGGLCTIIGTSTNLIARGLAQQD 149
>sp|P74635|Y753_SYNY3 Uncharacterized transporter slr0753 OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=slr0753 PE=3 SV=1
Length = 449
Score = 32.3 bits (72), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 413 SERQKLKVPQALSRIDTQGALFFLGILLSVSSLEAAGLLREIANYLDAHI-SNID----L 467
S+ + V L +D +FF+ I + + SLE G+ +A L + NI +
Sbjct: 266 SQSKIDTVHNILRDVDWSTLIFFMSIFVIIGSLEKTGVTASLAQLLAVVVGQNIAFGAIV 325
Query: 468 IASAIGVVSAVIDNVPLVAA 487
+ +G++S+V+ N+PLV A
Sbjct: 326 LVFTVGLLSSVVPNIPLVVA 345
>sp|Q57898|Y456_METJA Uncharacterized transporter MJ0456 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0456 PE=3 SV=1
Length = 352
Score = 32.3 bits (72), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 209 VFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRTLLWVIGFVTFFLSSILDNLTSTIVMV 268
+F L M I+ I+ + ++ I + R + +I F+T FLSS++ N S V++
Sbjct: 38 IFSLFYLMVIINIMRDTKFLDYISLKILKKSKRIFIALI-FLTLFLSSLITNDVSLFVII 96
Query: 269 SLLRKL-----VPPSEYRKLL---GAVVVIAANAGGAWTPIGDVTTTMLWIHGQISTL 318
L + +P + KL+ G ++AN G TPIG+ L+ I TL
Sbjct: 97 PLTLIIHRYTNMPFKDLEKLIIFEG----VSANIGSGLTPIGNPQNLFLFHFYNIGTL 150
>sp|P52137|YFJV_ECOLI Putative arsenical pump membrane protein (Fragment) OS=Escherichia
coli (strain K12) GN=yfjV PE=5 SV=1
Length = 338
Score = 32.3 bits (72), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 7/142 (4%)
Query: 207 EIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRTLLWV----IGFVTFFLSSILDNLT 262
+IV F LG M IV + GF + LW GF+T FLSS+++N+
Sbjct: 190 QIVIFSLG-MYIVVYGLRNAGFTEYLSGVLNLLADKGLWAATFGTGFLTAFLSSVMNNMP 248
Query: 263 STIVMVSLLRKLVPPSEYRKLLGAVVVIAANAGGAWTPIGDVTTTMLWIHGQISTLPTMK 322
+ ++ + ++ + VI + G TPIG + T+LW+H T+
Sbjct: 249 TVLIGALSIDGSTATGVVKEAMIYANVIGCDLGPKITPIGSL-ATLLWLHVLAQKNMTIT 307
Query: 323 -SLFIPSAVSLAVPLAFLSLTS 343
+ + + + VP+ F++L +
Sbjct: 308 WGYYFRTGIVMTVPVLFVTLAA 329
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,775,149
Number of Sequences: 539616
Number of extensions: 7006183
Number of successful extensions: 27953
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 27883
Number of HSP's gapped (non-prelim): 103
length of query: 537
length of database: 191,569,459
effective HSP length: 122
effective length of query: 415
effective length of database: 125,736,307
effective search space: 52180567405
effective search space used: 52180567405
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)