Query 045863
Match_columns 537
No_of_seqs 279 out of 1932
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 10:41:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f35_D Transporter, NADC famil 100.0 3.8E-45 1.3E-49 393.3 30.6 364 144-536 31-422 (449)
2 4f35_D Transporter, NADC famil 99.6 1E-13 3.5E-18 148.6 19.4 182 145-340 248-445 (449)
3 3ab3_B RHO guanine nucleotide 9.8 1E+02 0.0035 29.6 1.5 51 53-103 8-65 (246)
4 2fyu_K Ubiquinol-cytochrome C 4.9 5.5E+02 0.019 18.8 3.0 11 419-429 37-47 (56)
5 2lid_A Vitellogenin; lipid tra 6.8 1.6E+02 0.0053 18.9 0.0 17 101-117 6-22 (35)
6 2nx6_A Nematocyst outer WALL a 4.3 2.8E+02 0.0096 16.8 0.8 11 90-100 11-21 (27)
7 2enj_A NPKC-theta, protein kin 4.1 78 0.0027 27.8 -2.5 16 90-105 28-43 (138)
8 4g1u_A Hemin transport system 3.8 2.3E+03 0.079 21.1 7.9 57 219-276 235-296 (357)
9 3tds_E Formate/nitrite transpo 3.8 2.2E+03 0.075 20.3 7.4 35 417-451 101-135 (268)
10 3knv_A TNF receptor-associated 3.7 3.9E+02 0.013 22.8 1.7 12 87-99 27-38 (141)
No 1
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae}
Probab=100.00 E-value=3.8e-45 Score=393.29 Aligned_cols=364 Identities=17% Similarity=0.154 Sum_probs=278.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHH
Q 045863 144 QDLAMALLFGIGYTGIIFEESLAFNKSGVGLLMAVSLWIVRSIGAPSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVD 223 (537)
Q Consensus 144 ~~~~~l~IFv~~i~~ii~e~~l~ip~~~val~~~~~l~v~gvi~~~~~~~a~~~~~~~ls~~~~~I~li~g~~ii~~~l~ 223 (537)
+++..+++++.++++|++|+ +|.+++++++.+++.++|+. +++|+++++.+ +++++++|+|+++.+++
T Consensus 31 ~~~~~lai~~~~~~lw~te~---iP~~vtall~~~l~~l~gv~---~~~~a~~~~~~------~~i~li~g~~~la~al~ 98 (449)
T 4f35_D 31 NVVLGISMLAFIAVLWLTEA---LHVTVTAILVPVMAVFFGIF---ETQAALNNFAN------SIIFLFLGGFALAAAMH 98 (449)
T ss_dssp HHHHHHHHHHHHHHHHTTTS---SCSHHHHHHHHHHHHHTTSS---CHHHHHTTTTC------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHCCC---CHHHHHHHccC------HHHHHHHHHHHHHHHHH
Confidence 57889999999999999999 99999999999999999987 88999876654 99999999999999999
Q ss_pred HhChHHHHHHHHh---cCCchHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHh-----CCChh-HHHHHHHHHHHHHhh
Q 045863 224 AHQGFKLVTDNIT---TRKPRTLLWVIGFVTFFLSSILDNLTSTIVMVSLLRKL-----VPPSE-YRKLLGAVVVIAANA 294 (537)
Q Consensus 224 ~tGl~~ria~~l~---~~~~~~l~~~l~l~~~~lS~fl~N~ta~~im~PI~~~l-----~~p~~-~~~~~l~~va~aan~ 294 (537)
|+|++||+++++. +++++++.+.+++.++++|++++|++++++|.|++.++ .+|++ ..+.+++.+++++|+
T Consensus 99 ~tGl~~riA~~il~~~g~~~~~l~~~~~~~~~~lS~~isn~a~~~~~~Pi~~~i~~~~~~~~~~~~~~~lll~~~~aa~i 178 (449)
T 4f35_D 99 HQGLDKVIADKVLAMAQGKMSVAVFMLFGVTALLSMWISNTATAAMMLPLVLGVLSKVDADKQRSTYVFVLLGVAYSASI 178 (449)
T ss_dssp HHTHHHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHSCSCCCSSCCSSTTTTHHHHHHHHHH
T ss_pred HHCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhcchHHHHHhchHHHHHHHHHhhccchhHHHHHHHHHHHHHhh
Confidence 9999999999885 46889999999999999999999999999999998765 12322 222356899999999
Q ss_pred ccccccccchhhhhhHhcccCChHHHHHHhhHHHHHHHHHHHHHHHh-hccc-cCCCcCCccccccccCCchhHHHHHHH
Q 045863 295 GGAWTPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLAFLSL-TSEV-NGKGQESSNVLASEQMAPRGQLVFAVG 372 (537)
Q Consensus 295 Gg~~TpiG~~~Nll~~~~~~isf~~~~~~~~pp~lv~l~v~~~ll~~-~~~~-~~~~~~~~~l~~~~~i~~~~~~~~~l~ 372 (537)
||.+|++|+|+|++..+..+++|.||+..+.|+.++.+++.+.++++ +||. ++..|.. ++..+.+++++......
T Consensus 179 gg~~t~ig~~~N~i~~~~~~~~f~~~~~~~~p~~li~l~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 255 (449)
T 4f35_D 179 GGIATLVGSPPNAIAAAEVGLSFTDWMKFGLPTAMMMLPMAIAILYFLLKPTLNGMFELD---RAPVNWDKGKVVTLGIF 255 (449)
T ss_dssp HHSSSSSSSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CCCCCTHHHHHHHH
T ss_pred hhhcccCcCCCcccccccccccHHHhhhhcCchHHHHHHHHHHHHHHHhcccccccchhh---ccchhhhHHHHHHHHHH
Confidence 99999999999999888889999999999999999888877766666 4443 3222111 12223333333333222
Q ss_pred HHHHHHHHHHh-----hhcCC--ChHHHHHHHHHHHHHHhhhccccchhhccCCHHHHhhcCChHHHHHHHHHHHHHHHH
Q 045863 373 IGALIFVPVFK-----ALTGL--PPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRIDTQGALFFLGILLSVSSL 445 (537)
Q Consensus 373 l~~lill~i~~-----~~~gi--~~~~valiga~lLll~~~vl~~~~~~~~~i~~~~~l~~v~W~tLl~f~glf~l~~~L 445 (537)
...+ ++|++. ...+. +.+.+++.++.++...+ .++|||+.+++||+++++|+|++.+++++
T Consensus 256 ~l~i-~l~~~~~~l~~~~~~~~~~~~~val~~~~ll~~~~-----------~l~~~~~~~~i~W~~l~~~~g~~~l~~~l 323 (449)
T 4f35_D 256 GLTV-FLWIFSSPINAALGGFKSFDTLVALGAILMLSFAR-----------VVHWKEIQKTADWGVLLLFGGGLCLSNVL 323 (449)
T ss_dssp HHHH-HHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHTT-----------SSCHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHhhcccccccccccchhHHHHHHHHHHhhhhh-----------ccchhhhhcccCchHHHHhhhHHHHhHHH
Confidence 2222 223222 22233 34556665555554443 35899999999999999999999999999
Q ss_pred HHhcHHHHHHHHHHhhhhhh--HH----HHHHHHHHHHhHchHHHHHHHHhhhh-c---cCCCCChHHHHHHHHHHHHhh
Q 045863 446 EAAGLLREIANYLDAHISNI--DL----IASAIGVVSAVIDNVPLVAATMGMYD-L---TSFPQDSKFWQLIAYCAGTGG 515 (537)
Q Consensus 446 ~~tG~~~~la~~l~~~i~~~--~~----i~~i~~~lS~~isNtp~va~llpv~~-~---~~~~~~~~~~laLa~~a~iGg 515 (537)
+++|+.+|+++.+.+..++. .. +.+++.++|+|+||+|++++++|++. . .+.+ +....+.++++++. +
T Consensus 324 ~~sG~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~ls~f~sn~a~~~~l~Pi~~~~a~~~g~~-p~~~~~~~~~~~s~-~ 401 (449)
T 4f35_D 324 KQTGTSVFLANALSDMVSHMGIFVVILVVATFVVFLTEFASNTASAALLIPVFATVAEAFGMS-PVLLSVLIAVAASC-A 401 (449)
T ss_dssp HHHTHHHHHHHHHHHHHHTTCSHHHHHHHHHTTSEETEECCHHHHHHHHHHHHHHHHHHTTCC-SHHHHHHHHHHHHC-C
T ss_pred HhcCCHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHH-H
Confidence 99999999999998766432 11 23344667899999999999999973 1 3443 44555666777774 6
Q ss_pred hhhHHhHHHHHHHHhhcCccc
Q 045863 516 SMLIIGSAAGVAFMGMEKVDF 536 (537)
Q Consensus 516 ~lTpiGS~an~i~~g~~~~~f 536 (537)
++||+|+++|.+++|.++++|
T Consensus 402 ~~~p~~t~~n~i~~g~g~~~~ 422 (449)
T 4f35_D 402 FMLPVATPPNAIVFASGHIKQ 422 (449)
T ss_dssp CSSSSSSHHHHHHCSSGGGGT
T ss_pred hHhhhhhHHHHHHHhcCCCCH
Confidence 799999999999999999887
No 2
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae}
Probab=99.55 E-value=1e-13 Score=148.61 Aligned_cols=182 Identities=13% Similarity=0.220 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHHHhhc-------ccCcchHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhhhhccchhHHHHHHHHHH
Q 045863 145 DLAMALLFGIGYTGIIFEE-------SLAFNKSGVGLLMAVSLWIVRSIGAPSTEIAVSELSRASAEVSEIVFFLLGAMT 217 (537)
Q Consensus 145 ~~~~l~IFv~~i~~ii~e~-------~l~ip~~~val~~~~~l~v~gvi~~~~~~~a~~~~~~~ls~~~~~I~li~g~~i 217 (537)
.+....++..++.+|++.. ..+.+...+++.++.++...+++ +.+|+.++++| ++++++.|++.
T Consensus 248 ~~~~~~~~~l~i~l~~~~~~l~~~~~~~~~~~~~val~~~~ll~~~~~l---~~~~~~~~i~W------~~l~~~~g~~~ 318 (449)
T 4f35_D 248 KVVTLGIFGLTVFLWIFSSPINAALGGFKSFDTLVALGAILMLSFARVV---HWKEIQKTADW------GVLLLFGGGLC 318 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHTTSS---CHHHHHHHSCH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHhhhhhcc---chhhhhcccCc------hHHHHhhhHHH
Confidence 5556666666666665533 12233566777777777667765 88899888877 99999999999
Q ss_pred HHHHHHHhChHHHHHHHHhc----CCchHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHh-----CCChhHHHHHHHHH
Q 045863 218 IVEIVDAHQGFKLVTDNITT----RKPRTLLWVIGFVTFFLSSILDNLTSTIVMVSLLRKL-----VPPSEYRKLLGAVV 288 (537)
Q Consensus 218 i~~~l~~tGl~~ria~~l~~----~~~~~l~~~l~l~~~~lS~fl~N~ta~~im~PI~~~l-----~~p~~~~~~~l~~v 288 (537)
++.+++++|+.+++++.+.+ .+.......+.+.+.++|.|+||++++.+++|++..+ .+|.. +.+.+
T Consensus 319 l~~~l~~sG~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~ls~f~sn~a~~~~l~Pi~~~~a~~~g~~p~~----~~~~~ 394 (449)
T 4f35_D 319 LSNVLKQTGTSVFLANALSDMVSHMGIFVVILVVATFVVFLTEFASNTASAALLIPVFATVAEAFGMSPVL----LSVLI 394 (449)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHTTCSHHHHHHHHHTTSEETEECCHHHHHHHHHHHHHHHHHHTTCCSHH----HHHHH
T ss_pred HhHHHHhcCCHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHH----HHHHH
Confidence 99999999999999998742 3556666777777888999999999999999998554 34433 35678
Q ss_pred HHHHhhccccccccchhhhhhHhcccCChHHHHHHhhHHHHHHHHHHHHHHH
Q 045863 289 VIAANAGGAWTPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLAFLS 340 (537)
Q Consensus 289 a~aan~Gg~~TpiG~~~Nll~~~~~~isf~~~~~~~~pp~lv~l~v~~~ll~ 340 (537)
+++++. +.+||+|+|+|.++.+.+++++.||++.+.|..+++.++...+.+
T Consensus 395 ~~~~s~-~~~~p~~t~~n~i~~g~g~~~~~d~~k~G~~~~~~~~~v~~~~~~ 445 (449)
T 4f35_D 395 AVAASC-AFMLPVATPPNAIVFASGHIKQSEMMRVGLYLNIACIGLLTAIAM 445 (449)
T ss_dssp HHHHHC-CCSSSSSSHHHHHHCSSGGGGTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HhHhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888876 579999999999999988999999999999999887765444333
No 3
>3ab3_B RHO guanine nucleotide exchange factor 1; signal transduction, protein complex, GTP-binding, membrane, transducer, lipoprotein, nucleotide-binding; HET: GDP; 2.40A {Homo sapiens} PDB: 1shz_C*
Probab=9.75 E-value=1e+02 Score=29.58 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=8.0
Q ss_pred CCceeeecccccCC-CC-chhhhhccCCCChhhhhhc----c-CCCCCCCCCcccccC
Q 045863 53 NGVLARAEDKARES-SS-SIQQEAQQQPNNQKQFQEL----E-SSSGTCDPLCSLDET 103 (537)
Q Consensus 53 ~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~ 103 (537)
.|.++-.+|.++++ ++ +|+++..|++..-.++++. + ..-+.|.|.++++..
T Consensus 8 ~~~~~~~~~~~~~~~~~g~p~~~~~~~~IIg~EDddf~sd~e~~~~~q~g~Fqsle~L 65 (246)
T 3ab3_B 8 GGILVPMEDFARGAASPGPSRPGLVPVSIIGAEDEDFENELETNSEEQNSQFQSLEQV 65 (246)
T ss_dssp ---------------------------CCCCTTTTTTTTC-----------CCSGGGT
T ss_pred ccEEeehhhhcccCCCCCCCCCCCCCcccccccccccccccccCccccCCcccCHHHH
Confidence 47888899988887 33 2333445554443433332 1 113457776666544
No 4
>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 2ybb_K* 1l0n_K* 1qcr_K*
Probab=4.88 E-value=5.5e+02 Score=18.82 Aligned_cols=11 Identities=9% Similarity=-0.058 Sum_probs=8.9
Q ss_pred CHHHHhhcCCh
Q 045863 419 KVPQALSRIDT 429 (537)
Q Consensus 419 ~~~~~l~~v~W 429 (537)
+|+++++++|+
T Consensus 37 dwr~IL~~IP~ 47 (56)
T 2fyu_K 37 DWRLILDWVPY 47 (56)
T ss_dssp TCHHHHTSSSS
T ss_pred cHHHHHhhcCc
Confidence 68899888875
No 5
>2lid_A Vitellogenin; lipid transport; HET: SEP; NMR {Synthetic}
Probab=6.79 E-value=1.6e+02 Score=18.94 Aligned_cols=17 Identities=35% Similarity=0.519 Sum_probs=10.8
Q ss_pred ccCCchhhhcccccchh
Q 045863 101 DETSSSDFEANYQPKTD 117 (537)
Q Consensus 101 ~~~~~~~~~~~~~~~~~ 117 (537)
||..||.||++.....|
T Consensus 6 destsesfesiadnndd 22 (35)
T 2lid_A 6 DESTSESFESIADNNDD 22 (35)
Confidence 56666777776655544
No 6
>2nx6_A Nematocyst outer WALL antigen; disulfide rich, turns, structural protein; NMR {Hydra vulgaris}
Probab=4.30 E-value=2.8e+02 Score=16.79 Aligned_cols=11 Identities=45% Similarity=0.954 Sum_probs=7.5
Q ss_pred CCCCCCCCccc
Q 045863 90 SSGTCDPLCSL 100 (537)
Q Consensus 90 ~~~~~~~~~~~ 100 (537)
-|-+|.|-||-
T Consensus 11 cspscapqcsq 21 (27)
T 2nx6_A 11 CSPSCAPQCSQ 21 (27)
T ss_dssp CCGGGTTTTCH
T ss_pred CCCccchHHHH
Confidence 45678888764
No 7
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}
Probab=4.09 E-value=78 Score=27.84 Aligned_cols=16 Identities=13% Similarity=0.358 Sum_probs=11.0
Q ss_pred CCCCCCCCcccccCCc
Q 045863 90 SSGTCDPLCSLDETSS 105 (537)
Q Consensus 90 ~~~~~~~~~~~~~~~~ 105 (537)
.+..+||.|.+|=-++
T Consensus 28 ~~~~lDPY~aV~VdE~ 43 (138)
T 2enj_A 28 QGEAVNPYCAVLVKEY 43 (138)
T ss_dssp CCCCCCCEEEEEEEEE
T ss_pred ccccCCceEEEEeeee
Confidence 3557999998764443
No 8
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=3.81 E-value=2.3e+03 Score=21.09 Aligned_cols=57 Identities=9% Similarity=-0.074 Sum_probs=28.2
Q ss_pred HHHHHHhChHHHHHHHHhcCCchHHHHHH----HHHHHHHHhhccchhHHHHHHHHH-HHhCC
Q 045863 219 VEIVDAHQGFKLVTDNITTRKPRTLLWVI----GFVTFFLSSILDNLTSTIVMVSLL-RKLVP 276 (537)
Q Consensus 219 ~~~l~~tGl~~ria~~l~~~~~~~l~~~l----~l~~~~lS~fl~N~ta~~im~PI~-~~l~~ 276 (537)
.+-++--.++|..|..+ +-+.++.-+.+ .++++...++.....-..++.|=+ |.+..
T Consensus 235 ~r~L~~l~lGe~~A~sL-Gv~v~~~r~~~l~l~all~a~ava~vG~I~FVGLivPhiaR~l~g 296 (357)
T 4g1u_A 235 ARQLNLLQLGDEEAHYL-GVNVRQAKLRLLLLSAILIGAAVAVSGVIGFIGLVVPHLIRMRIG 296 (357)
T ss_dssp HHHHHHGGGCHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSTTTHHHHHHHTTSC
T ss_pred HHhhHHHcCCHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44455555556666554 22344333333 333333444445555556778865 55543
No 9
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=3.75 E-value=2.2e+03 Score=20.33 Aligned_cols=35 Identities=11% Similarity=0.061 Sum_probs=24.6
Q ss_pred cCCHHHHhhcCChHHHHHHHHHHHHHHHHHHhcHH
Q 045863 417 KLKVPQALSRIDTQGALFFLGILLSVSSLEAAGLL 451 (537)
Q Consensus 417 ~i~~~~~l~~v~W~tLl~f~glf~l~~~L~~tG~~ 451 (537)
+.+|++.++.--|-.+-=+.|.+.++..+..+|..
T Consensus 101 ~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~sg~~ 135 (268)
T 3tds_E 101 GVSIKDTSKIWAYSWVGNLIGALVLGIIFVGTGLV 135 (268)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 46899998875555565567777777777777754
No 10
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=3.68 E-value=3.9e+02 Score=22.83 Aligned_cols=12 Identities=17% Similarity=0.368 Sum_probs=6.0
Q ss_pred ccCCCCCCCCCcc
Q 045863 87 LESSSGTCDPLCS 99 (537)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (537)
-.++...| |+|-
T Consensus 27 ~l~~~~~C-~IC~ 38 (141)
T 3knv_A 27 KLEAKYLC-SACR 38 (141)
T ss_dssp GCCGGGBC-TTTC
T ss_pred cCCcCcCC-CCCC
Confidence 33445556 5663
Done!