Query 045865
Match_columns 225
No_of_seqs 134 out of 2125
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 06:18:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045865.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045865hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 2.1E-24 4.6E-29 194.6 14.4 206 3-222 53-280 (968)
2 PLN00113 leucine-rich repeat r 99.9 4.6E-21 1E-25 173.1 12.2 89 44-137 160-248 (968)
3 KOG4194 Membrane glycoprotein 99.7 4.7E-19 1E-23 144.5 1.6 190 19-222 124-337 (873)
4 KOG4194 Membrane glycoprotein 99.7 7.1E-19 1.5E-23 143.5 2.0 162 15-187 168-329 (873)
5 KOG0617 Ras suppressor protein 99.7 3E-20 6.5E-25 130.1 -5.7 162 44-220 29-191 (264)
6 KOG0617 Ras suppressor protein 99.7 3.6E-19 7.7E-24 124.8 -7.0 188 18-225 31-222 (264)
7 cd00116 LRR_RI Leucine-rich re 99.6 3E-15 6.4E-20 119.3 13.0 197 20-219 81-295 (319)
8 KOG0444 Cytoskeletal regulator 99.6 1.1E-17 2.4E-22 138.0 -1.0 174 25-216 131-305 (1255)
9 KOG4237 Extracellular matrix p 99.6 9.6E-17 2.1E-21 125.5 1.9 190 19-223 66-343 (498)
10 cd00116 LRR_RI Leucine-rich re 99.6 1.3E-14 2.7E-19 115.7 12.4 191 20-217 51-265 (319)
11 KOG0444 Cytoskeletal regulator 99.6 1.3E-16 2.8E-21 131.8 0.2 178 22-215 80-258 (1255)
12 KOG1909 Ran GTPase-activating 99.5 9E-14 2E-18 107.4 8.6 198 19-218 29-286 (382)
13 KOG0472 Leucine-rich repeat pr 99.5 2.1E-15 4.5E-20 118.6 -1.9 186 21-225 363-551 (565)
14 KOG0472 Leucine-rich repeat pr 99.5 2.9E-16 6.4E-21 123.3 -8.5 129 75-215 182-310 (565)
15 KOG4237 Extracellular matrix p 99.4 1.1E-14 2.5E-19 114.1 -2.3 187 19-215 90-359 (498)
16 KOG0618 Serine/threonine phosp 99.4 3.4E-14 7.3E-19 121.7 -0.2 130 75-213 358-487 (1081)
17 PLN03210 Resistant to P. syrin 99.4 8.8E-12 1.9E-16 114.5 12.4 127 20-162 611-737 (1153)
18 KOG0532 Leucine-rich repeat (L 99.3 2.5E-14 5.4E-19 116.9 -3.9 181 22-225 77-257 (722)
19 KOG0618 Serine/threonine phosp 99.3 4.5E-14 9.8E-19 120.9 -3.1 184 18-217 239-467 (1081)
20 KOG1909 Ran GTPase-activating 99.3 3E-12 6.4E-17 99.1 6.5 195 19-215 91-311 (382)
21 PF14580 LRR_9: Leucine-rich r 99.3 4.4E-12 9.4E-17 91.5 6.1 130 73-209 16-147 (175)
22 PRK15370 E3 ubiquitin-protein 99.3 1.9E-11 4.2E-16 106.5 10.6 165 20-216 199-381 (754)
23 PLN03210 Resistant to P. syrin 99.3 2.7E-11 5.8E-16 111.3 11.9 178 20-215 634-883 (1153)
24 PF14580 LRR_9: Leucine-rich r 99.3 1.5E-11 3.2E-16 88.7 7.3 127 20-158 19-148 (175)
25 PRK15387 E3 ubiquitin-protein 99.3 1E-11 2.2E-16 108.0 7.0 151 48-222 302-465 (788)
26 PLN03150 hypothetical protein; 99.3 4.9E-11 1.1E-15 103.0 10.7 119 9-136 403-526 (623)
27 KOG3207 Beta-tubulin folding c 99.2 5E-12 1.1E-16 100.5 3.8 193 16-217 142-341 (505)
28 PRK15370 E3 ubiquitin-protein 99.2 9.6E-12 2.1E-16 108.4 5.3 141 21-187 221-379 (754)
29 KOG3207 Beta-tubulin folding c 99.2 1E-11 2.2E-16 98.8 2.7 165 45-215 118-284 (505)
30 KOG2982 Uncharacterized conser 99.2 5.6E-11 1.2E-15 90.7 5.9 191 19-218 70-265 (418)
31 COG4886 Leucine-rich repeat (L 99.1 8.3E-11 1.8E-15 96.6 5.8 180 21-222 117-297 (394)
32 KOG1259 Nischarin, modulator o 99.0 4E-11 8.6E-16 91.7 0.4 132 76-218 284-415 (490)
33 PLN03150 hypothetical protein; 99.0 1.3E-09 2.8E-14 94.2 9.0 107 50-161 420-526 (623)
34 PRK15387 E3 ubiquitin-protein 99.0 1E-09 2.2E-14 95.7 8.2 12 176-187 343-354 (788)
35 KOG1259 Nischarin, modulator o 99.0 5.6E-11 1.2E-15 90.9 0.3 133 44-188 280-412 (490)
36 COG5238 RNA1 Ran GTPase-activa 99.0 7.4E-09 1.6E-13 78.3 9.6 197 20-218 30-288 (388)
37 KOG2120 SCF ubiquitin ligase, 99.0 1E-10 2.2E-15 89.3 -0.4 185 19-212 184-373 (419)
38 COG4886 Leucine-rich repeat (L 98.9 2E-09 4.3E-14 88.5 4.3 174 24-218 97-271 (394)
39 KOG0532 Leucine-rich repeat (L 98.8 4.9E-11 1.1E-15 98.0 -7.7 176 25-222 55-230 (722)
40 PF13855 LRR_8: Leucine rich r 98.8 3.9E-09 8.5E-14 62.9 2.5 23 39-61 16-38 (61)
41 PF13855 LRR_8: Leucine rich r 98.8 3.8E-09 8.1E-14 63.0 2.2 61 48-112 1-61 (61)
42 KOG2982 Uncharacterized conser 98.6 6.5E-08 1.4E-12 74.2 5.4 169 47-220 44-217 (418)
43 KOG4658 Apoptotic ATPase [Sign 98.6 2.5E-08 5.4E-13 88.8 3.5 91 38-134 561-651 (889)
44 KOG2120 SCF ubiquitin ligase, 98.5 1.3E-08 2.8E-13 78.0 -0.5 161 49-214 186-350 (419)
45 KOG0531 Protein phosphatase 1, 98.4 3.9E-08 8.4E-13 81.4 -0.5 175 22-216 74-269 (414)
46 KOG4658 Apoptotic ATPase [Sign 98.4 6.5E-07 1.4E-11 80.0 6.6 128 21-161 524-653 (889)
47 COG5238 RNA1 Ran GTPase-activa 98.4 4.6E-07 9.9E-12 68.9 4.5 197 19-216 91-317 (388)
48 KOG3665 ZYG-1-like serine/thre 98.3 5E-07 1.1E-11 78.7 4.1 142 76-220 122-268 (699)
49 KOG1859 Leucine-rich repeat pr 98.3 3.4E-08 7.4E-13 83.9 -3.4 129 50-190 166-294 (1096)
50 KOG3665 ZYG-1-like serine/thre 98.3 2.7E-06 5.8E-11 74.2 7.7 153 48-210 122-283 (699)
51 KOG0531 Protein phosphatase 1, 98.3 1.2E-07 2.5E-12 78.5 -1.0 130 45-187 69-198 (414)
52 KOG4579 Leucine-rich repeat (L 98.2 1.6E-07 3.5E-12 64.1 -1.1 105 23-138 30-136 (177)
53 KOG1859 Leucine-rich repeat pr 98.2 2.3E-07 4.9E-12 79.1 -0.6 105 100-216 164-268 (1096)
54 KOG4579 Leucine-rich repeat (L 98.2 1.3E-07 2.7E-12 64.6 -1.7 81 100-185 53-133 (177)
55 KOG1644 U2-associated snRNP A' 98.1 1.2E-06 2.6E-11 63.7 2.2 41 72-112 60-100 (233)
56 PF12799 LRR_4: Leucine Rich r 98.1 3.4E-06 7.3E-11 46.4 3.2 37 176-216 2-38 (44)
57 PF12799 LRR_4: Leucine Rich r 97.9 2.7E-05 6E-10 42.8 4.2 36 77-113 2-37 (44)
58 KOG1644 U2-associated snRNP A' 97.8 3.1E-05 6.7E-10 56.5 3.8 128 50-186 21-151 (233)
59 KOG2123 Uncharacterized conser 97.7 2.8E-06 6.1E-11 64.9 -2.2 83 75-163 18-101 (388)
60 KOG4341 F-box protein containi 97.7 2.5E-05 5.5E-10 62.8 2.6 188 20-213 138-331 (483)
61 KOG2739 Leucine-rich acidic nu 97.4 0.00012 2.5E-09 55.5 2.4 109 45-159 40-152 (260)
62 KOG4308 LRR-containing protein 97.3 1.3E-05 2.9E-10 67.1 -3.6 197 22-220 89-308 (478)
63 KOG2739 Leucine-rich acidic nu 97.3 0.00015 3.2E-09 54.9 2.3 64 121-185 61-126 (260)
64 PF13306 LRR_5: Leucine rich r 97.3 0.00016 3.5E-09 49.5 2.3 63 40-108 4-66 (129)
65 PRK15386 type III secretion pr 97.2 0.001 2.2E-08 54.5 6.4 55 46-110 50-104 (426)
66 KOG1947 Leucine rich repeat pr 97.2 0.00074 1.6E-08 56.8 5.6 116 44-162 184-307 (482)
67 KOG2123 Uncharacterized conser 97.1 6.2E-05 1.4E-09 57.7 -1.6 84 20-115 19-103 (388)
68 KOG1947 Leucine rich repeat pr 97.0 0.001 2.2E-08 56.0 5.1 140 72-212 184-331 (482)
69 PF13306 LRR_5: Leucine rich r 96.8 0.002 4.4E-08 44.0 3.9 102 19-134 11-112 (129)
70 PRK15386 type III secretion pr 96.7 0.0053 1.1E-07 50.4 6.5 126 64-212 40-187 (426)
71 KOG4308 LRR-containing protein 96.7 0.0002 4.3E-09 60.2 -2.1 194 19-214 114-330 (478)
72 KOG3864 Uncharacterized conser 96.1 0.0031 6.7E-08 46.3 1.7 82 77-159 102-185 (221)
73 KOG3864 Uncharacterized conser 96.0 0.0034 7.3E-08 46.1 1.4 82 126-211 102-185 (221)
74 PF00560 LRR_1: Leucine Rich R 95.9 0.004 8.8E-08 28.5 1.0 20 203-223 1-20 (22)
75 KOG4341 F-box protein containi 95.9 0.028 6.1E-07 45.9 6.2 140 73-214 291-438 (483)
76 PF13516 LRR_6: Leucine Rich r 95.6 0.0023 5E-08 30.0 -0.5 21 202-222 2-22 (24)
77 PF13504 LRR_7: Leucine rich r 94.9 0.021 4.5E-07 24.3 1.5 14 202-215 1-14 (17)
78 smart00370 LRR Leucine-rich re 94.7 0.034 7.3E-07 26.4 2.1 23 201-223 1-23 (26)
79 smart00369 LRR_TYP Leucine-ric 94.7 0.034 7.3E-07 26.4 2.1 23 201-223 1-23 (26)
80 smart00368 LRR_RI Leucine rich 92.5 0.053 1.1E-06 26.4 0.6 19 203-221 3-21 (28)
81 PF08263 LRRNT_2: Leucine rich 87.9 0.32 7E-06 26.2 1.3 12 5-16 32-43 (43)
82 smart00367 LRR_CC Leucine-rich 85.7 0.5 1.1E-05 22.3 1.1 11 175-185 2-12 (26)
83 smart00364 LRR_BAC Leucine-ric 85.4 0.59 1.3E-05 22.2 1.2 18 202-220 2-19 (26)
84 KOG3763 mRNA export factor TAP 84.0 1.5 3.3E-05 37.5 3.8 91 123-216 216-313 (585)
85 KOG0473 Leucine-rich repeat pr 83.6 0.034 7.3E-07 42.1 -5.2 81 21-112 43-123 (326)
86 KOG0473 Leucine-rich repeat pr 82.3 0.053 1.1E-06 41.1 -4.6 94 97-198 39-132 (326)
87 KOG3763 mRNA export factor TAP 79.4 3.6 7.7E-05 35.3 4.5 83 73-156 215-307 (585)
88 smart00365 LRR_SD22 Leucine-ri 79.1 2.1 4.5E-05 20.4 1.8 14 202-215 2-15 (26)
89 TIGR00864 PCC polycystin catio 33.3 27 0.00059 36.3 1.9 32 26-61 1-32 (2740)
90 smart00446 LRRcap occurring C- 21.4 57 0.0012 15.5 0.9 15 71-85 8-22 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=2.1e-24 Score=194.63 Aligned_cols=206 Identities=27% Similarity=0.471 Sum_probs=131.4
Q ss_pred CCCcccCCCceeecCCcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEE
Q 045865 3 GATDCCQWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLN 82 (225)
Q Consensus 3 ~~~~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~ 82 (225)
.+++||.|.|+.|.. .++|+.|+++++.+.. ..+..+..+++|+.|++++|.+.+..|.. .+..+.+|++|+
T Consensus 53 ~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~----~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~---~~~~l~~L~~L~ 124 (968)
T PLN00113 53 SSADVCLWQGITCNN-SSRVVSIDLSGKNISG----KISSAIFRLPYIQTINLSNNQLSGPIPDD---IFTTSSSLRYLN 124 (968)
T ss_pred CCCCCCcCcceecCC-CCcEEEEEecCCCccc----cCChHHhCCCCCCEEECCCCccCCcCChH---HhccCCCCCEEE
Confidence 457899999999984 5789999999998763 34556788888888888888887656653 233556666666
Q ss_pred CCCCCCC----------------------hhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHH
Q 045865 83 LSGNSFN----------------------NSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHIS 140 (225)
Q Consensus 83 l~~~~l~----------------------~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 140 (225)
+++|.++ +..|..+..+++|++|++++|.+.+..|. .+..+++|++|++++|.+.+.
T Consensus 125 Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~ 203 (968)
T PLN00113 125 LSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQ 203 (968)
T ss_pred CcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh-hhhhCcCCCeeeccCCCCcCc
Confidence 6655554 33444455555555555555555444443 455555566666665555544
Q ss_pred HHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccch
Q 045865 141 LLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSR 220 (225)
Q Consensus 141 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~ 220 (225)
.|..+.. +++|+.|++++|.+.+..|. .+.++++|++|++++| ...+.+|..++. +++|+.|++++|.+++..|.
T Consensus 204 ~p~~l~~-l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n--~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~ 278 (968)
T PLN00113 204 IPRELGQ-MKSLKWIYLGYNNLSGEIPY-EIGGLTSLNHLDLVYN--NLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPP 278 (968)
T ss_pred CChHHcC-cCCccEEECcCCccCCcCCh-hHhcCCCCCEEECcCc--eeccccChhHhC-CCCCCEEECcCCeeeccCch
Confidence 5555555 56666666666665555555 5566666666666666 334455666666 66666666666666666655
Q ss_pred hh
Q 045865 221 IL 222 (225)
Q Consensus 221 ~~ 222 (225)
.+
T Consensus 279 ~l 280 (968)
T PLN00113 279 SI 280 (968)
T ss_pred hH
Confidence 44
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=4.6e-21 Score=173.07 Aligned_cols=89 Identities=33% Similarity=0.488 Sum_probs=36.7
Q ss_pred hcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhcc
Q 045865 44 FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHN 123 (225)
Q Consensus 44 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 123 (225)
+..+++|++|++++|.+.+..|. .+..+++|++|++++|.+.+..|..+..+.+|+.|++.+|.+.+.+|. .+..
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~ 234 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPN----SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY-EIGG 234 (968)
T ss_pred HhcCCCCCEEECccCcccccCCh----hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh-hHhc
Confidence 34444444444444444433333 344444444444444444433344444444444444444443333332 3333
Q ss_pred CCCCceeecCCCCC
Q 045865 124 FTNLEYLTLESSSL 137 (225)
Q Consensus 124 l~~L~~l~l~~~~~ 137 (225)
+++|+.|++.+|.+
T Consensus 235 l~~L~~L~L~~n~l 248 (968)
T PLN00113 235 LTSLNHLDLVYNNL 248 (968)
T ss_pred CCCCCEEECcCcee
Confidence 33344444433333
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=4.7e-19 Score=144.54 Aligned_cols=190 Identities=21% Similarity=0.263 Sum_probs=119.2
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~ 98 (225)
.++++.|+|.+|-+. ++.++.+..++.|++||++.|.|...-.+ .|..-.++++|+|+.|.|+......|..
T Consensus 124 sghl~~L~L~~N~I~----sv~se~L~~l~alrslDLSrN~is~i~~~----sfp~~~ni~~L~La~N~It~l~~~~F~~ 195 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLIS----SVTSEELSALPALRSLDLSRNLISEIPKP----SFPAKVNIKKLNLASNRITTLETGHFDS 195 (873)
T ss_pred ccceeEEeeeccccc----cccHHHHHhHhhhhhhhhhhchhhcccCC----CCCCCCCceEEeeccccccccccccccc
Confidence 456788888888777 66667777777777777777776653222 3555566777777777666555556666
Q ss_pred CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCc------------------------HHHHHHHHhhCCCCCE
Q 045865 99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH------------------------ISLLQSIASIFPSLKN 154 (225)
Q Consensus 99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~------------------------~~~~~~~~~~~~~L~~ 154 (225)
+.+|..|.+++|+++ .+|...|.+++.|+.|+|.+|++. ...-..++. +.++++
T Consensus 196 lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~-l~kme~ 273 (873)
T KOG4194|consen 196 LNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG-LEKMEH 273 (873)
T ss_pred cchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceee-ecccce
Confidence 666666666666665 555545555666666666655543 111122232 566667
Q ss_pred EeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865 155 LSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL 222 (225)
Q Consensus 155 L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~ 222 (225)
|++..|++... ...++.+++.|+.|+++.|.| .+.-++.+.. +++|+.|+|++|+|+.-.+..|
T Consensus 274 l~L~~N~l~~v-n~g~lfgLt~L~~L~lS~NaI--~rih~d~Wsf-tqkL~~LdLs~N~i~~l~~~sf 337 (873)
T KOG4194|consen 274 LNLETNRLQAV-NEGWLFGLTSLEQLDLSYNAI--QRIHIDSWSF-TQKLKELDLSSNRITRLDEGSF 337 (873)
T ss_pred eecccchhhhh-hcccccccchhhhhccchhhh--heeecchhhh-cccceeEeccccccccCChhHH
Confidence 77777766533 333677777777888887744 3444556666 8888888888888876555443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.73 E-value=7.1e-19 Score=143.54 Aligned_cols=162 Identities=22% Similarity=0.304 Sum_probs=115.3
Q ss_pred ecCCcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHH
Q 045865 15 CSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILS 94 (225)
Q Consensus 15 ~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 94 (225)
|.+....++.|+|++|++. .+....|..+.+|.+|.++.|+++. .|.. .|+.+++|+.|+|..|.+...-..
T Consensus 168 sfp~~~ni~~L~La~N~It----~l~~~~F~~lnsL~tlkLsrNritt-Lp~r---~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 168 SFPAKVNIKKLNLASNRIT----TLETGHFDSLNSLLTLKLSRNRITT-LPQR---SFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred CCCCCCCceEEeecccccc----ccccccccccchheeeecccCcccc-cCHH---Hhhhcchhhhhhccccceeeehhh
Confidence 3334467899999999998 7788889999999999999999988 4443 678899999999999988654466
Q ss_pred hhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCC
Q 045865 95 SLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHF 174 (225)
Q Consensus 95 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 174 (225)
.|.++++|+.|.+.+|++. .+....|..+.++++|+|..|++......+++. +.+|+.|++++|.|...-++ .+..+
T Consensus 240 tFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg-Lt~L~~L~lS~NaI~rih~d-~Wsft 316 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG-LTSLEQLDLSYNAIQRIHID-SWSFT 316 (873)
T ss_pred hhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccc-cchhhhhccchhhhheeecc-hhhhc
Confidence 7888888888888888886 444446667777777777777665433344444 56666666666655533233 55555
Q ss_pred CCCcEEEccCCcc
Q 045865 175 KSLEHFDMRFARI 187 (225)
Q Consensus 175 ~~L~~l~l~~n~i 187 (225)
.+|+.|+++.|+|
T Consensus 317 qkL~~LdLs~N~i 329 (873)
T KOG4194|consen 317 QKLKELDLSSNRI 329 (873)
T ss_pred ccceeEecccccc
Confidence 5555555555544
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.73 E-value=3e-20 Score=130.15 Aligned_cols=162 Identities=25% Similarity=0.363 Sum_probs=129.2
Q ss_pred hcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhcc
Q 045865 44 FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHN 123 (225)
Q Consensus 44 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 123 (225)
+..++.++.|.+++|.+.. .|+ .+..+.+|+.|++.+|+++. +|..++.++.|+.|+++.|++. ..|. .|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~-vpp----nia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lpr-gfgs 100 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTV-VPP----NIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPR-GFGS 100 (264)
T ss_pred ccchhhhhhhhcccCceee-cCC----cHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCcc-ccCC
Confidence 3456777888888888877 444 37788888888888888877 7778888888999998888886 7776 8888
Q ss_pred CCCCceeecCCCCCc-HHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCC
Q 045865 124 FTNLEYLTLESSSLH-ISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMP 202 (225)
Q Consensus 124 l~~L~~l~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~ 202 (225)
++-|+.|++..|.+. ..+|..++. +.-|+.|++++|.+. ..|. .++++++|+.+.+..|.+ -++|+.++. +.
T Consensus 101 ~p~levldltynnl~e~~lpgnff~-m~tlralyl~dndfe-~lp~-dvg~lt~lqil~lrdndl---l~lpkeig~-lt 173 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFY-MTTLRALYLGDNDFE-ILPP-DVGKLTNLQILSLRDNDL---LSLPKEIGD-LT 173 (264)
T ss_pred CchhhhhhccccccccccCCcchhH-HHHHHHHHhcCCCcc-cCCh-hhhhhcceeEEeeccCch---hhCcHHHHH-HH
Confidence 888899998887765 345677777 888888889888886 6666 788889999999888844 467888888 88
Q ss_pred CCcEEEccCCcCCCccch
Q 045865 203 SLKYLLLSYSTLGTNSSR 220 (225)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~ 220 (225)
.|+.|++.+|+++..+|+
T Consensus 174 ~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 174 RLRELHIQGNRLTVLPPE 191 (264)
T ss_pred HHHHHhcccceeeecChh
Confidence 899999999999855554
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=3.6e-19 Score=124.79 Aligned_cols=188 Identities=18% Similarity=0.250 Sum_probs=153.6
Q ss_pred CcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhh
Q 045865 18 TTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 97 (225)
Q Consensus 18 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~ 97 (225)
..+.+++|.+++|.+. . .+.-++.+.+|+.|++.+|.|.. .|. .++.+++|+.|+++.|.+.. +|..|+
T Consensus 31 ~~s~ITrLtLSHNKl~----~-vppnia~l~nlevln~~nnqie~-lp~----~issl~klr~lnvgmnrl~~-lprgfg 99 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT----V-VPPNIAELKNLEVLNLSNNQIEE-LPT----SISSLPKLRILNVGMNRLNI-LPRGFG 99 (264)
T ss_pred chhhhhhhhcccCcee----e-cCCcHHHhhhhhhhhcccchhhh-cCh----hhhhchhhhheecchhhhhc-CccccC
Confidence 3568899999999986 3 44456889999999999999988 666 58999999999999998865 788999
Q ss_pred cCCCCCEEEcCCCCCCCc-cchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCC
Q 045865 98 HLSSLRSLNLLWNRLEGS-IDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKS 176 (225)
Q Consensus 98 ~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 176 (225)
.++.|+.||+..|.+... +|. .|.-+..|+.|++++|.+. .+|..+++ +++|++|.+.+|.+. ..|. .++.+..
T Consensus 100 s~p~levldltynnl~e~~lpg-nff~m~tlralyl~dndfe-~lp~dvg~-lt~lqil~lrdndll-~lpk-eig~lt~ 174 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPG-NFFYMTTLRALYLGDNDFE-ILPPDVGK-LTNLQILSLRDNDLL-SLPK-EIGDLTR 174 (264)
T ss_pred CCchhhhhhccccccccccCCc-chhHHHHHHHHHhcCCCcc-cCChhhhh-hcceeEEeeccCchh-hCcH-HHHHHHH
Confidence 999999999999988743 555 7888899999999999986 67888998 999999999999876 6777 8999999
Q ss_pred CcEEEccCCccccchhHHHHHhhcCC---CCcEEEccCCcCCCccchhhccC
Q 045865 177 LEHFDMRFARIALNTSFLQIIGESMP---SLKYLLLSYSTLGTNSSRILHQG 225 (225)
Q Consensus 177 L~~l~l~~n~i~~~~~~~~~l~~~~~---~L~~L~l~~n~l~~~~~~~~~~~ 225 (225)
|+.+++.+|++ ..+|..++. +. +-+.+.+..|....++.+-|..|
T Consensus 175 lrelhiqgnrl---~vlppel~~-l~l~~~k~v~r~E~NPwv~pIaeQf~lG 222 (264)
T KOG0617|consen 175 LRELHIQGNRL---TVLPPELAN-LDLVGNKQVMRMEENPWVNPIAEQFLLG 222 (264)
T ss_pred HHHHhccccee---eecChhhhh-hhhhhhHHHHhhhhCCCCChHHHHHHhh
Confidence 99999999977 345665554 22 33456777777776766655443
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.65 E-value=3e-15 Score=119.30 Aligned_cols=197 Identities=22% Similarity=0.191 Sum_probs=99.1
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcC-CCCCEEECCCCCCCh----hhHH
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRL-NNLKMLNLSGNSFNN----SILS 94 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~~----~~~~ 94 (225)
.+++.|+++++.+.............. ++|+.|++++|.+...........+..+ ++|+.|++++|.+++ ..+.
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 356666666665542111111112222 3366666666655432222222234445 666666666666652 1233
Q ss_pred hhhcCCCCCEEEcCCCCCCCccch---hhhccCCCCceeecCCCCCcHHH----HHHHHhhCCCCCEEeccccccccccc
Q 045865 95 SLTHLSSLRSLNLLWNRLEGSIDV---KELHNFTNLEYLTLESSSLHISL----LQSIASIFPSLKNLSMSFCEVNGVVR 167 (225)
Q Consensus 95 ~l~~l~~L~~L~l~~n~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~ 167 (225)
.+..+..|++|++.+|.+.+.... ..+...++|+.|++++|.+.+.. ...+.. +++|+.|++++|.+++...
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~-~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS-LKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcc-cCCCCEEecCCCcCchHHH
Confidence 444555666666666665522110 12334456777777766665332 223333 5667777777766653211
Q ss_pred cCC----CCCCCCCcEEEccCCccccc--hhHHHHHhhcCCCCcEEEccCCcCCCccc
Q 045865 168 GQG----FPHFKSLEHFDMRFARIALN--TSFLQIIGESMPSLKYLLLSYSTLGTNSS 219 (225)
Q Consensus 168 ~~~----~~~~~~L~~l~l~~n~i~~~--~~~~~~l~~~~~~L~~L~l~~n~l~~~~~ 219 (225)
... ....+.|+.+++++|.+... ..+...+.. +++|+.+++++|.+++...
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~-~~~L~~l~l~~N~l~~~~~ 295 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAE-KESLLELDLRGNKFGEEGA 295 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhc-CCCccEEECCCCCCcHHHH
Confidence 101 11235677777777754321 234445555 6677777777777775543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.65 E-value=1.1e-17 Score=137.98 Aligned_cols=174 Identities=23% Similarity=0.328 Sum_probs=100.4
Q ss_pred eeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCE
Q 045865 25 LDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRS 104 (225)
Q Consensus 25 l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~ 104 (225)
|+|++|++. .++.+.|.++..|-.|++++|++.. .|+ .+..+.+|++|.|++|.+.......+..+.+|+.
T Consensus 131 LNLS~N~Ie----tIPn~lfinLtDLLfLDLS~NrLe~-LPP----Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~v 201 (1255)
T KOG0444|consen 131 LNLSYNNIE----TIPNSLFINLTDLLFLDLSNNRLEM-LPP----QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSV 201 (1255)
T ss_pred EEcccCccc----cCCchHHHhhHhHhhhccccchhhh-cCH----HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhh
Confidence 455555554 4555566666666666666666655 444 3566667777777777665444444444455555
Q ss_pred EEcCCCCCC-CccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEcc
Q 045865 105 LNLLWNRLE-GSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMR 183 (225)
Q Consensus 105 L~l~~n~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~ 183 (225)
|.++++.-+ ..+|. .+..+.+|..++++.|.+. ..|..++. +++|+.|++++|.|+ .... ..+.+.+|++|++|
T Consensus 202 Lhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp-~vPecly~-l~~LrrLNLS~N~it-eL~~-~~~~W~~lEtLNlS 276 (1255)
T KOG0444|consen 202 LHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLP-IVPECLYK-LRNLRRLNLSGNKIT-ELNM-TEGEWENLETLNLS 276 (1255)
T ss_pred hhcccccchhhcCCC-chhhhhhhhhccccccCCC-cchHHHhh-hhhhheeccCcCcee-eeec-cHHHHhhhhhhccc
Confidence 555554322 23444 5555666666666666654 45666666 777777777777766 3222 34455566666666
Q ss_pred CCccccchhHHHHHhhcCCCCcEEEccCCcCCC
Q 045865 184 FARIALNTSFLQIIGESMPSLKYLLLSYSTLGT 216 (225)
Q Consensus 184 ~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~ 216 (225)
.|.+ ..+|.++.+ +++|+.|++.+|+++.
T Consensus 277 rNQL---t~LP~avcK-L~kL~kLy~n~NkL~F 305 (1255)
T KOG0444|consen 277 RNQL---TVLPDAVCK-LTKLTKLYANNNKLTF 305 (1255)
T ss_pred cchh---ccchHHHhh-hHHHHHHHhccCcccc
Confidence 6633 345555665 6666666666665543
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.62 E-value=9.6e-17 Score=125.55 Aligned_cols=190 Identities=19% Similarity=0.273 Sum_probs=137.3
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCC-CCCChhhHH---
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSG-NSFNNSILS--- 94 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~--- 94 (225)
+...+++.|..|++. .+++.+|..+++|++|++++|.|....|. +|.+++.+..|.+.+ |.|+.....
T Consensus 66 P~~tveirLdqN~I~----~iP~~aF~~l~~LRrLdLS~N~Is~I~p~----AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 66 PPETVEIRLDQNQIS----SIPPGAFKTLHRLRRLDLSKNNISFIAPD----AFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred CCcceEEEeccCCcc----cCChhhccchhhhceecccccchhhcChH----hhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 456788999999998 89999999999999999999999998787 688888887777766 777653333
Q ss_pred ---------------------hhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCc------H--------
Q 045865 95 ---------------------SLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH------I-------- 139 (225)
Q Consensus 95 ---------------------~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~------~-------- 139 (225)
.|..++++..|.+.+|.+. .++...++.+..++.+.+..|.+- +
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence 3444556666666666665 333334555555555555444310 0
Q ss_pred -----------------------------------------------HHH-HHHHhhCCCCCEEeccccccccccccCCC
Q 045865 140 -----------------------------------------------SLL-QSIASIFPSLKNLSMSFCEVNGVVRGQGF 171 (225)
Q Consensus 140 -----------------------------------------------~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 171 (225)
..| ..+.. +++|+.|++++|.++..... +|
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~-L~~L~~lnlsnN~i~~i~~~-aF 294 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK-LPNLRKLNLSNNKITRIEDG-AF 294 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh-cccceEeccCCCccchhhhh-hh
Confidence 003 33455 89999999999999855445 89
Q ss_pred CCCCCCcEEEccCCccccchhHH-HHHhhcCCCCcEEEccCCcCCCccchhhc
Q 045865 172 PHFKSLEHFDMRFARIALNTSFL-QIIGESMPSLKYLLLSYSTLGTNSSRILH 223 (225)
Q Consensus 172 ~~~~~L~~l~l~~n~i~~~~~~~-~~l~~~~~~L~~L~l~~n~l~~~~~~~~~ 223 (225)
.....++.|.+..|+| ..+. ..+.. ++.|++|+|++|+|+...|..|-
T Consensus 295 e~~a~l~eL~L~~N~l---~~v~~~~f~~-ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 295 EGAAELQELYLTRNKL---EFVSSGMFQG-LSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred cchhhhhhhhcCcchH---HHHHHHhhhc-cccceeeeecCCeeEEEeccccc
Confidence 9999999999999966 2333 34444 99999999999999987776553
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.60 E-value=1.3e-14 Score=115.69 Aligned_cols=191 Identities=22% Similarity=0.195 Sum_probs=125.7
Q ss_pred CceEEeeccccccc--cchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcC---CCCCEEECCCCCCCh----
Q 045865 20 GRVIALDLSYIYSG--EYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRL---NNLKMLNLSGNSFNN---- 90 (225)
Q Consensus 20 ~~v~~l~l~~~~~~--~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l---~~L~~L~l~~~~l~~---- 90 (225)
..+++++++++.+. ...+...+..+..+++|+.|++++|.+....+. .+..+ ++|++|++++|.+..
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~~~~L~~L~ls~~~~~~~~~~ 126 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG----VLESLLRSSSLQELKLNNNGLGDRGLR 126 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH----HHHHHhccCcccEEEeeCCccchHHHH
Confidence 34778888887766 344555566777788888888888887654443 23333 458888888888863
Q ss_pred hhHHhhhcC-CCCCEEEcCCCCCCCccch---hhhccCCCCceeecCCCCCcHHH----HHHHHhhCCCCCEEecccccc
Q 045865 91 SILSSLTHL-SSLRSLNLLWNRLEGSIDV---KELHNFTNLEYLTLESSSLHISL----LQSIASIFPSLKNLSMSFCEV 162 (225)
Q Consensus 91 ~~~~~l~~l-~~L~~L~l~~n~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~ 162 (225)
.....+..+ ++|+.+++++|.+.+.... ..+..+.+|+.|++.+|.+.+.. +..+.. +++|+.|++++|.+
T Consensus 127 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i 205 (319)
T cd00116 127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKA-NCNLEVLDLNNNGL 205 (319)
T ss_pred HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHh-CCCCCEEeccCCcc
Confidence 223345556 7888899888887632111 14455667888899888877432 233444 56899999988887
Q ss_pred cccccc---CCCCCCCCCcEEEccCCccccchhHHHHHhhc----CCCCcEEEccCCcCCCc
Q 045865 163 NGVVRG---QGFPHFKSLEHFDMRFARIALNTSFLQIIGES----MPSLKYLLLSYSTLGTN 217 (225)
Q Consensus 163 ~~~~~~---~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~----~~~L~~L~l~~n~l~~~ 217 (225)
++.... ..+..+++|++|++++|++ .+.....+... .+.|+.|++++|.+++.
T Consensus 206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l--~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~ 265 (319)
T cd00116 206 TDEGASALAETLASLKSLEVLNLGDNNL--TDAGAAALASALLSPNISLLTLSLSCNDITDD 265 (319)
T ss_pred ChHHHHHHHHHhcccCCCCEEecCCCcC--chHHHHHHHHHHhccCCCceEEEccCCCCCcH
Confidence 633211 1466778899999999854 33223333321 36889999999988743
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.60 E-value=1.3e-16 Score=131.84 Aligned_cols=178 Identities=22% Similarity=0.225 Sum_probs=96.9
Q ss_pred eEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCC
Q 045865 22 VIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 101 (225)
Q Consensus 22 v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~ 101 (225)
++.+++..|++... -++..+.++..|+.|+++.|.+.. .|. .+...+++-.|+|++|.|..+.-.-+.++..
T Consensus 80 LRsv~~R~N~LKns---GiP~diF~l~dLt~lDLShNqL~E-vP~----~LE~AKn~iVLNLS~N~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNS---GIPTDIFRLKDLTILDLSHNQLRE-VPT----NLEYAKNSIVLNLSYNNIETIPNSLFINLTD 151 (1255)
T ss_pred hHHHhhhccccccC---CCCchhcccccceeeecchhhhhh-cch----hhhhhcCcEEEEcccCccccCCchHHHhhHh
Confidence 34445555554432 123344556666666666666655 444 3555566666666666666544444455666
Q ss_pred CCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccc-cccccCCCCCCCCCcEE
Q 045865 102 LRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN-GVVRGQGFPHFKSLEHF 180 (225)
Q Consensus 102 L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~l 180 (225)
|-.|+++.|++. .+|+ .+.++..|++|.|++|.+.......+.. +.+|..|++++..-+ .-+|. .+..+.+|..+
T Consensus 152 LLfLDLS~NrLe-~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPs-mtsL~vLhms~TqRTl~N~Pt-sld~l~NL~dv 227 (1255)
T KOG0444|consen 152 LLFLDLSNNRLE-MLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPS-MTSLSVLHMSNTQRTLDNIPT-SLDDLHNLRDV 227 (1255)
T ss_pred Hhhhccccchhh-hcCH-HHHHHhhhhhhhcCCChhhHHHHhcCcc-chhhhhhhcccccchhhcCCC-chhhhhhhhhc
Confidence 666666666665 5555 6666666666666666654333333333 445555555544322 12222 44455555666
Q ss_pred EccCCccccchhHHHHHhhcCCCCcEEEccCCcCC
Q 045865 181 DMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLG 215 (225)
Q Consensus 181 ~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~ 215 (225)
|+|.|.+ ..+|..+.+ +++|++|+|++|.|+
T Consensus 228 DlS~N~L---p~vPecly~-l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 228 DLSENNL---PIVPECLYK-LRNLRRLNLSGNKIT 258 (1255)
T ss_pred cccccCC---CcchHHHhh-hhhhheeccCcCcee
Confidence 6666543 344555555 555666666655554
No 12
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.50 E-value=9e-14 Score=107.41 Aligned_cols=198 Identities=20% Similarity=0.199 Sum_probs=107.0
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCC----------------------------------CCccEEEccCCcccCcc
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPF----------------------------------QQLESLDLTQNKIAGCV 64 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l----------------------------------~~L~~L~l~~n~i~~~~ 64 (225)
...++.++|++|.++.++....+..+.+. ++|++|++++|-+....
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 45678888888888765545555544444 45555555555554444
Q ss_pred hhhHHHHHhcCCCCCEEECCCCCCChhhHHh-------------hhcCCCCCEEEcCCCCCCCccc---hhhhccCCCCc
Q 045865 65 ENEGIERLSRLNNLKMLNLSGNSFNNSILSS-------------LTHLSSLRSLNLLWNRLEGSID---VKELHNFTNLE 128 (225)
Q Consensus 65 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~-------------l~~l~~L~~L~l~~n~~~~~~~---~~~~~~l~~L~ 128 (225)
+..+.+.+..+..|++|.+.+|.+....... ...-+.|+++...+|++...-. ...++..+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 4433334444555555555555543211111 1123456666666665542110 01445556666
Q ss_pred eeecCCCCCcH----HHHHHHHhhCCCCCEEeccccccccc----cccCCCCCCCCCcEEEccCCccccch--hHHHHHh
Q 045865 129 YLTLESSSLHI----SLLQSIASIFPSLKNLSMSFCEVNGV----VRGQGFPHFKSLEHFDMRFARIALNT--SFLQIIG 198 (225)
Q Consensus 129 ~l~l~~~~~~~----~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~l~l~~n~i~~~~--~~~~~l~ 198 (225)
.+.+..|+|.. .....+.+ +++|+.|++.+|.++.. +.. .++.+++|+.+++++|.+...+ .+.+++.
T Consensus 189 evr~~qN~I~~eG~~al~eal~~-~~~LevLdl~DNtft~egs~~Lak-aL~s~~~L~El~l~dcll~~~Ga~a~~~al~ 266 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEH-CPHLEVLDLRDNTFTLEGSVALAK-ALSSWPHLRELNLGDCLLENEGAIAFVDALK 266 (382)
T ss_pred eEEEecccccCchhHHHHHHHHh-CCcceeeecccchhhhHHHHHHHH-HhcccchheeecccccccccccHHHHHHHHh
Confidence 66666666541 12344555 77777777777766522 112 4556666777777776554433 3455555
Q ss_pred hcCCCCcEEEccCCcCCCcc
Q 045865 199 ESMPSLKYLLLSYSTLGTNS 218 (225)
Q Consensus 199 ~~~~~L~~L~l~~n~l~~~~ 218 (225)
...|.|+++.+.+|.++...
T Consensus 267 ~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 267 ESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred ccCCCCceeccCcchhHHHH
Confidence 55667777777777665443
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.48 E-value=2.1e-15 Score=118.59 Aligned_cols=186 Identities=23% Similarity=0.335 Sum_probs=139.6
Q ss_pred ceEEeeccccccccchhHHhhhhhcCCC--CccEEEccCCcccCcchhhHHHHHhcCCCCCE-EECCCCCCChhhHHhhh
Q 045865 21 RVIALDLSYIYSGEYSWYLNASLFTPFQ--QLESLDLTQNKIAGCVENEGIERLSRLNNLKM-LNLSGNSFNNSILSSLT 97 (225)
Q Consensus 21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~--~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~-L~l~~~~l~~~~~~~l~ 97 (225)
+.++|++++-++. .++.+.|+.-+ -++.++++.|.+.+ .|. .+..+..+.+ +.+++|.+. ..|..++
T Consensus 363 ~tkiL~~s~~qlt----~VPdEVfea~~~~~Vt~VnfskNqL~e-lPk----~L~~lkelvT~l~lsnn~is-fv~~~l~ 432 (565)
T KOG0472|consen 363 TTKILDVSDKQLT----LVPDEVFEAAKSEIVTSVNFSKNQLCE-LPK----RLVELKELVTDLVLSNNKIS-FVPLELS 432 (565)
T ss_pred hhhhhcccccccc----cCCHHHHHHhhhcceEEEecccchHhh-hhh----hhHHHHHHHHHHHhhcCccc-cchHHHH
Confidence 4566777777776 55666655443 26678888888776 554 3333333333 344555544 4788888
Q ss_pred cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCC
Q 045865 98 HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSL 177 (225)
Q Consensus 98 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 177 (225)
.+++|..|++++|.+. .+|. .+..+-.|+.++++.|++. ..|..+.. ..-++.+-.+.|.+. ..+.+.+.++.+|
T Consensus 433 ~l~kLt~L~L~NN~Ln-~LP~-e~~~lv~Lq~LnlS~NrFr-~lP~~~y~-lq~lEtllas~nqi~-~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 433 QLQKLTFLDLSNNLLN-DLPE-EMGSLVRLQTLNLSFNRFR-MLPECLYE-LQTLETLLASNNQIG-SVDPSGLKNMRNL 507 (565)
T ss_pred hhhcceeeecccchhh-hcch-hhhhhhhhheecccccccc-cchHHHhh-HHHHHHHHhcccccc-ccChHHhhhhhhc
Confidence 9999999999999987 8887 7778888999999999886 67777776 666777766777776 5555478999999
Q ss_pred cEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhhccC
Q 045865 178 EHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRILHQG 225 (225)
Q Consensus 178 ~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 225 (225)
.++|+..|.+ ..+|+.+++ |.+|+.|.+.+|+|.-+...++.+|
T Consensus 508 ~tLDL~nNdl---q~IPp~Lgn-mtnL~hLeL~gNpfr~Pr~~iLmkg 551 (565)
T KOG0472|consen 508 TTLDLQNNDL---QQIPPILGN-MTNLRHLELDGNPFRQPRHQILMKG 551 (565)
T ss_pred ceeccCCCch---hhCChhhcc-ccceeEEEecCCccCCCHHHHhccC
Confidence 9999999966 678999999 9999999999999996666666554
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.45 E-value=2.9e-16 Score=123.27 Aligned_cols=129 Identities=24% Similarity=0.295 Sum_probs=57.9
Q ss_pred CCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCE
Q 045865 75 LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKN 154 (225)
Q Consensus 75 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 154 (225)
++.|++||...|-++. +|..++.+.+|+-|++.+|++. .+| .|..+..|+.++++.|.+. .+|.....+++++..
T Consensus 182 m~~L~~ld~~~N~L~t-lP~~lg~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLET-LPPELGGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLV 256 (565)
T ss_pred HHHHHhcccchhhhhc-CChhhcchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHH-hhHHHHhccccccee
Confidence 4444444444443332 3444444444444444444443 333 3444444444444444443 333333322445555
Q ss_pred EeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCC
Q 045865 155 LSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLG 215 (225)
Q Consensus 155 L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~ 215 (225)
|++.+|.++ +.|+ .+.-+++|+++|+++|.| +.+|-.++. + +|+.|-+.||++.
T Consensus 257 LDLRdNklk-e~Pd-e~clLrsL~rLDlSNN~i---s~Lp~sLgn-l-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 257 LDLRDNKLK-EVPD-EICLLRSLERLDLSNNDI---SSLPYSLGN-L-HLKFLALEGNPLR 310 (565)
T ss_pred eeccccccc-cCch-HHHHhhhhhhhcccCCcc---ccCCccccc-c-eeeehhhcCCchH
Confidence 555555544 4444 444445555555555533 334444444 4 4555555555443
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.41 E-value=1.1e-14 Score=114.09 Aligned_cols=187 Identities=21% Similarity=0.243 Sum_probs=130.1
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEcc-CCcccCcchhhHH---------------------HHHhcCC
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLT-QNKIAGCVENEGI---------------------ERLSRLN 76 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~-~n~i~~~~~~~~~---------------------~~~~~l~ 76 (225)
-.++++|||++|++. .+.+.+|.+++.+.+|-+- +|+|.. ++...| +.|..++
T Consensus 90 l~~LRrLdLS~N~Is----~I~p~AF~GL~~l~~Lvlyg~NkI~~-l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~ 164 (498)
T KOG4237|consen 90 LHRLRRLDLSKNNIS----FIAPDAFKGLASLLSLVLYGNNKITD-LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLP 164 (498)
T ss_pred hhhhceecccccchh----hcChHhhhhhHhhhHHHhhcCCchhh-hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhh
Confidence 357899999999987 6777777888777665544 366665 333222 3567778
Q ss_pred CCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCC-------------------------------------------
Q 045865 77 NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLE------------------------------------------- 113 (225)
Q Consensus 77 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~------------------------------------------- 113 (225)
+++.|.+.+|.+....-..+..+..++.+.+..|.+-
T Consensus 165 ~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf 244 (498)
T KOG4237|consen 165 SLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKF 244 (498)
T ss_pred hcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhh
Confidence 8888888888765533335555555666555555411
Q ss_pred ------------------CccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCC
Q 045865 114 ------------------GSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFK 175 (225)
Q Consensus 114 ------------------~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 175 (225)
...|...|..+++|+.|++++|.++..-..++.. ...+++|.+..|.+...... .|.++.
T Consensus 245 ~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~-~a~l~eL~L~~N~l~~v~~~-~f~~ls 322 (498)
T KOG4237|consen 245 LCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG-AAELQELYLTRNKLEFVSSG-MFQGLS 322 (498)
T ss_pred hhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc-hhhhhhhhcCcchHHHHHHH-hhhccc
Confidence 0111134566889999999999998665566665 88899999999988744344 888899
Q ss_pred CCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCC
Q 045865 176 SLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLG 215 (225)
Q Consensus 176 ~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~ 215 (225)
+|+.|++.+|+| +...|.+|.. +..|.+|++-+|++-
T Consensus 323 ~L~tL~L~~N~i--t~~~~~aF~~-~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 323 GLKTLSLYDNQI--TTVAPGAFQT-LFSLSTLNLLSNPFN 359 (498)
T ss_pred cceeeeecCCee--EEEecccccc-cceeeeeehccCccc
Confidence 999999999955 4444666666 888889988888763
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.40 E-value=3.4e-14 Score=121.69 Aligned_cols=130 Identities=25% Similarity=0.390 Sum_probs=93.8
Q ss_pred CCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCE
Q 045865 75 LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKN 154 (225)
Q Consensus 75 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 154 (225)
++.|+.|.+.+|.+++.....+..+..|+.|+++.|++. .+|...+.++..|+.|+|++|++. .+|..+.. ++.|+.
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~-~~~L~t 434 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVAN-LGRLHT 434 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHh-hhhhHH
Confidence 446677777788887777777777888888888888886 666667778888888888888876 56677777 788888
Q ss_pred EeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCc
Q 045865 155 LSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYST 213 (225)
Q Consensus 155 L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~ 213 (225)
|....|.+. ..| .+..++.|+.+|+++|+++. ..++... . -++|+.||++||.
T Consensus 435 L~ahsN~l~-~fP--e~~~l~qL~~lDlS~N~L~~-~~l~~~~-p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 435 LRAHSNQLL-SFP--ELAQLPQLKVLDLSCNNLSE-VTLPEAL-P-SPNLKYLDLSGNT 487 (1081)
T ss_pred HhhcCCcee-ech--hhhhcCcceEEecccchhhh-hhhhhhC-C-CcccceeeccCCc
Confidence 888888776 555 37778888888888885421 1223322 2 3678888888885
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.35 E-value=8.8e-12 Score=114.47 Aligned_cols=127 Identities=20% Similarity=0.159 Sum_probs=81.5
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 99 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 99 (225)
..+++|+++++.+. .+.. .+..+++|+.|+++++......|. +..+++|++|++.+|.....+|..+..+
T Consensus 611 ~~L~~L~L~~s~l~----~L~~-~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 611 ENLVKLQMQGSKLE----KLWD-GVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred cCCcEEECcCcccc----cccc-ccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhcc
Confidence 46677777777665 3322 346678888888887654443554 6778888888888877666677888888
Q ss_pred CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEecccccc
Q 045865 100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEV 162 (225)
Q Consensus 100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 162 (225)
++|+.|++.+|.....+|. .+ .+.+|+.|++.+|.....+|.. ..+|+.|++.+|.+
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~-~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i 737 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPT-GI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAI 737 (1153)
T ss_pred CCCCEEeCCCCCCcCccCC-cC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcc
Confidence 8888888888754446664 32 5667777777766433222211 23455555555544
No 18
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.35 E-value=2.5e-14 Score=116.87 Aligned_cols=181 Identities=24% Similarity=0.300 Sum_probs=143.5
Q ss_pred eEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCC
Q 045865 22 VIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 101 (225)
Q Consensus 22 v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~ 101 (225)
...+|++-|++.+ .+..+..+-.|+.+.+..|.|.. +|. .++.+..|..++|+.|++.. +|..+..++
T Consensus 77 t~~aDlsrNR~~e-----lp~~~~~f~~Le~liLy~n~~r~-ip~----~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp- 144 (722)
T KOG0532|consen 77 TVFADLSRNRFSE-----LPEEACAFVSLESLILYHNCIRT-IPE----AICNLEALTFLDLSSNQLSH-LPDGLCDLP- 144 (722)
T ss_pred hhhhhcccccccc-----CchHHHHHHHHHHHHHHhcccee-cch----hhhhhhHHHHhhhccchhhc-CChhhhcCc-
Confidence 4557788887753 23334445567777888888776 555 57888899999999998876 566666664
Q ss_pred CCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEE
Q 045865 102 LRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFD 181 (225)
Q Consensus 102 L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~ 181 (225)
|+.|-+++|++. .+|. .+....+|..++.+.|.+. ..+..+++ +.+|+.|.+..|... ..|. .+..++ |..||
T Consensus 145 Lkvli~sNNkl~-~lp~-~ig~~~tl~~ld~s~nei~-slpsql~~-l~slr~l~vrRn~l~-~lp~-El~~Lp-Li~lD 217 (722)
T KOG0532|consen 145 LKVLIVSNNKLT-SLPE-EIGLLPTLAHLDVSKNEIQ-SLPSQLGY-LTSLRDLNVRRNHLE-DLPE-ELCSLP-LIRLD 217 (722)
T ss_pred ceeEEEecCccc-cCCc-ccccchhHHHhhhhhhhhh-hchHHhhh-HHHHHHHHHhhhhhh-hCCH-HHhCCc-eeeee
Confidence 889999999987 7776 6667788999999999986 56777777 899999999999887 5566 556444 99999
Q ss_pred ccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhhccC
Q 045865 182 MRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRILHQG 225 (225)
Q Consensus 182 l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 225 (225)
+++|+| ..+|..+.+ |++|++|-|.+|.|+.+++.++-+|
T Consensus 218 fScNki---s~iPv~fr~-m~~Lq~l~LenNPLqSPPAqIC~kG 257 (722)
T KOG0532|consen 218 FSCNKI---SYLPVDFRK-MRHLQVLQLENNPLQSPPAQICEKG 257 (722)
T ss_pred cccCce---eecchhhhh-hhhheeeeeccCCCCCChHHHHhcc
Confidence 999987 678999999 9999999999999998888887665
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.34 E-value=4.5e-14 Score=120.92 Aligned_cols=184 Identities=27% Similarity=0.330 Sum_probs=114.6
Q ss_pred CcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhh
Q 045865 18 TTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 97 (225)
Q Consensus 18 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~ 97 (225)
.+..++.++++.+++. .++ .-+..+..|+.+....|.+.. .|. ++....+|+.|....|.+.. +|....
T Consensus 239 ~p~nl~~~dis~n~l~----~lp-~wi~~~~nle~l~~n~N~l~~-lp~----ri~~~~~L~~l~~~~nel~y-ip~~le 307 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLS----NLP-EWIGACANLEALNANHNRLVA-LPL----RISRITSLVSLSAAYNELEY-IPPFLE 307 (1081)
T ss_pred ccccceeeecchhhhh----cch-HHHHhcccceEecccchhHHh-hHH----HHhhhhhHHHHHhhhhhhhh-CCCccc
Confidence 3456777777777775 344 666777777777777777743 444 34555566666666655554 344555
Q ss_pred cCCCCCEEEcCCCCCCCccchhhh-------------------------ccCCCCceeecCCCCCcHHHHHHHHhhCCCC
Q 045865 98 HLSSLRSLNLLWNRLEGSIDVKEL-------------------------HNFTNLEYLTLESSSLHISLLQSIASIFPSL 152 (225)
Q Consensus 98 ~l~~L~~L~l~~n~~~~~~~~~~~-------------------------~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L 152 (225)
++..|++|++..|.+. .+|...+ ..+..|+.|++.+|.+++.....+-. +++|
T Consensus 308 ~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~-~~hL 385 (1081)
T KOG0618|consen 308 GLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN-FKHL 385 (1081)
T ss_pred ccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc-ccce
Confidence 5666777777777664 4333111 11234566677777776555555555 7778
Q ss_pred CEEeccccccccccccCCCCCCCCCcEEEccCCccccc--------------------hhHHHHHhhcCCCCcEEEccCC
Q 045865 153 KNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALN--------------------TSFLQIIGESMPSLKYLLLSYS 212 (225)
Q Consensus 153 ~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~--------------------~~~~~~l~~~~~~L~~L~l~~n 212 (225)
+.|++++|++. .+|...+.++..|+.|++|+|+++.. ..+| .+.+ ++.|+++|++.|
T Consensus 386 KVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~-l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 386 KVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQ-LPQLKVLDLSCN 462 (1081)
T ss_pred eeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhh-cCcceEEecccc
Confidence 88888888776 55655777777788888888865211 1244 4556 677777777777
Q ss_pred cCCCc
Q 045865 213 TLGTN 217 (225)
Q Consensus 213 ~l~~~ 217 (225)
.|+..
T Consensus 463 ~L~~~ 467 (1081)
T KOG0618|consen 463 NLSEV 467 (1081)
T ss_pred hhhhh
Confidence 77643
No 20
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.33 E-value=3e-12 Score=99.14 Aligned_cols=195 Identities=19% Similarity=0.234 Sum_probs=144.3
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhH---------HHHHhcCCCCCEEECCCCCCC
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEG---------IERLSRLNNLKMLNLSGNSFN 89 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~---------~~~~~~l~~L~~L~l~~~~l~ 89 (225)
+++++.++||.|-++..+..-....+.++..|+.|.+.+|.+.......+ .+....-+.||++...+|.+.
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 45899999999999875555555677788999999999998864322211 112345679999999999885
Q ss_pred h----hhHHhhhcCCCCCEEEcCCCCCCCc---cchhhhccCCCCceeecCCCCCcHH----HHHHHHhhCCCCCEEecc
Q 045865 90 N----SILSSLTHLSSLRSLNLLWNRLEGS---IDVKELHNFTNLEYLTLESSSLHIS----LLQSIASIFPSLKNLSMS 158 (225)
Q Consensus 90 ~----~~~~~l~~l~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~~L~~L~l~ 158 (225)
. .....+..++.|+.+.++.|.+... .....+..+++|+.|+|.+|.++.. +...+.. |++|+.++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s-~~~L~El~l~ 249 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS-WPHLRELNLG 249 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc-cchheeeccc
Confidence 3 3456777889999999999988632 1223677889999999999998733 3455666 8899999999
Q ss_pred cccccccccc----CCCCCCCCCcEEEccCCccccch--hHHHHHhhcCCCCcEEEccCCcCC
Q 045865 159 FCEVNGVVRG----QGFPHFKSLEHFDMRFARIALNT--SFLQIIGESMPSLKYLLLSYSTLG 215 (225)
Q Consensus 159 ~n~~~~~~~~----~~~~~~~~L~~l~l~~n~i~~~~--~~~~~l~~~~~~L~~L~l~~n~l~ 215 (225)
+|.+...-.. ..-...++|+.+.+.+|.|.... .+...+.. .+.|..|+|++|++.
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCccccc
Confidence 9998643322 11224689999999999764433 23445666 899999999999993
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.31 E-value=4.4e-12 Score=91.49 Aligned_cols=130 Identities=22% Similarity=0.321 Sum_probs=45.5
Q ss_pred hcCCCCCEEECCCCCCChhhHHhhh-cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCC
Q 045865 73 SRLNNLKMLNLSGNSFNNSILSSLT-HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPS 151 (225)
Q Consensus 73 ~~l~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~ 151 (225)
.....+++|++.+|.|+.. +.+. .+.+|+.|++++|.+. .+. .+..++.|+.|++++|.+... ...+...+++
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~ 89 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN 89 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence 3445667777777777542 2343 4567777888888776 444 566677888888888887643 2233222788
Q ss_pred CCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhH-HHHHhhcCCCCcEEEc
Q 045865 152 LKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSF-LQIIGESMPSLKYLLL 209 (225)
Q Consensus 152 L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~-~~~l~~~~~~L~~L~l 209 (225)
|++|++++|.|........+..+++|+.|++.+|++...... .-.+.. +|+|+.||-
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~-lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYK-LPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH--TT-SEETT
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHH-cChhheeCC
Confidence 888888888876432223566788888888888876433332 233555 888888753
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.30 E-value=1.9e-11 Score=106.54 Aligned_cols=165 Identities=21% Similarity=0.309 Sum_probs=86.0
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 99 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 99 (225)
..++.|++++|.+. .++...+ ++|++|++++|.+.. +|. .+ ..+|+.|++++|.+.. +|..+.
T Consensus 199 ~~L~~L~Ls~N~Lt----sLP~~l~---~nL~~L~Ls~N~Lts-LP~----~l--~~~L~~L~Ls~N~L~~-LP~~l~-- 261 (754)
T PRK15370 199 EQITTLILDNNELK----SLPENLQ---GNIKTLYANSNQLTS-IPA----TL--PDTIQEMELSINRITE-LPERLP-- 261 (754)
T ss_pred cCCcEEEecCCCCC----cCChhhc---cCCCEEECCCCcccc-CCh----hh--hccccEEECcCCccCc-CChhHh--
Confidence 45677777777776 4444332 356777777776664 343 12 2356666666666553 333332
Q ss_pred CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHH------------------hhCCCCCEEeccccc
Q 045865 100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIA------------------SIFPSLKNLSMSFCE 161 (225)
Q Consensus 100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~------------------~~~~~L~~L~l~~n~ 161 (225)
.+|+.|+++.|.+. .+|. .+ ..+|+.|++++|.+.. +|..+. ...++|+.|++++|.
T Consensus 262 s~L~~L~Ls~N~L~-~LP~-~l--~~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~ 336 (754)
T PRK15370 262 SALQSLDLFHNKIS-CLPE-NL--PEELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA 336 (754)
T ss_pred CCCCEEECcCCccC-cccc-cc--CCCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCc
Confidence 34566666665554 3332 12 1245555555554431 111000 002456666666666
Q ss_pred cccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCC
Q 045865 162 VNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGT 216 (225)
Q Consensus 162 ~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~ 216 (225)
++ .+|. .+ .++|+.|++++|++ ..+|..+ .++|+.|+|++|.|+.
T Consensus 337 Lt-~LP~-~l--~~sL~~L~Ls~N~L---~~LP~~l---p~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 337 LT-SLPA-SL--PPELQVLDVSKNQI---TVLPETL---PPTITTLDVSRNALTN 381 (754)
T ss_pred cc-cCCh-hh--cCcccEEECCCCCC---CcCChhh---cCCcCEEECCCCcCCC
Confidence 55 2333 22 24677777777754 2344433 3467777777777764
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.29 E-value=2.7e-11 Score=111.33 Aligned_cols=178 Identities=21% Similarity=0.201 Sum_probs=95.7
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 99 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 99 (225)
.+++.++++++.... .++ .+..+++|++|++++|......|. .+..+++|+.|++++|.....+|..+ .+
T Consensus 634 ~~Lk~L~Ls~~~~l~---~ip--~ls~l~~Le~L~L~~c~~L~~lp~----si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 634 TGLRNIDLRGSKNLK---EIP--DLSMATNLETLKLSDCSSLVELPS----SIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred CCCCEEECCCCCCcC---cCC--ccccCCcccEEEecCCCCccccch----hhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 467777777654321 232 255667777777777654444555 46667777777777654333233322 34
Q ss_pred CCCCEEEcC---------------------CCCCCCccchh-----------------------------hhccCCCCce
Q 045865 100 SSLRSLNLL---------------------WNRLEGSIDVK-----------------------------ELHNFTNLEY 129 (225)
Q Consensus 100 ~~L~~L~l~---------------------~n~~~~~~~~~-----------------------------~~~~l~~L~~ 129 (225)
.+|+.|+++ +|.+. .+|.. .....++|+.
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred CCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence 444444444 44432 22210 0001235666
Q ss_pred eecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccC---------------------Cccc
Q 045865 130 LTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRF---------------------ARIA 188 (225)
Q Consensus 130 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~---------------------n~i~ 188 (225)
|++++|.....+|..+.. +++|+.|++++|.....+|. .+ ++++|+.|++++ |.+
T Consensus 783 L~Ls~n~~l~~lP~si~~-L~~L~~L~Ls~C~~L~~LP~-~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i- 858 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQN-LHKLEHLEIENCINLETLPT-GI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI- 858 (1153)
T ss_pred eeCCCCCCccccChhhhC-CCCCCEEECCCCCCcCeeCC-CC-CccccCEEECCCCCccccccccccccCEeECCCCCC-
Confidence 667666554456666766 88888888887753334443 22 344444444444 432
Q ss_pred cchhHHHHHhhcCCCCcEEEccCC-cCC
Q 045865 189 LNTSFLQIIGESMPSLKYLLLSYS-TLG 215 (225)
Q Consensus 189 ~~~~~~~~l~~~~~~L~~L~l~~n-~l~ 215 (225)
..+|..+.. +++|+.|++.+| .++
T Consensus 859 --~~iP~si~~-l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 859 --EEVPWWIEK-FSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred --ccChHHHhc-CCCCCEEECCCCCCcC
Confidence 245555666 666777777663 444
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.27 E-value=1.5e-11 Score=88.74 Aligned_cols=127 Identities=28% Similarity=0.321 Sum_probs=50.3
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 99 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 99 (225)
-++++|++.++++. .+.. .-..+.+|+.|++++|.|.. +.. +..++.|++|++++|.++.........+
T Consensus 19 ~~~~~L~L~~n~I~----~Ie~-L~~~l~~L~~L~Ls~N~I~~-l~~-----l~~L~~L~~L~L~~N~I~~i~~~l~~~l 87 (175)
T PF14580_consen 19 VKLRELNLRGNQIS----TIEN-LGATLDKLEVLDLSNNQITK-LEG-----LPGLPRLKTLDLSNNRISSISEGLDKNL 87 (175)
T ss_dssp ---------------------S---TT-TT--EEE-TTS--S---TT---------TT--EEE--SS---S-CHHHHHH-
T ss_pred cccccccccccccc----cccc-hhhhhcCCCEEECCCCCCcc-ccC-----ccChhhhhhcccCCCCCCccccchHHhC
Confidence 36788999999886 3322 22357889999999999886 333 6778999999999999987433333468
Q ss_pred CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHH--HH-HHHHhhCCCCCEEecc
Q 045865 100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHIS--LL-QSIASIFPSLKNLSMS 158 (225)
Q Consensus 100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~--~~-~~~~~~~~~L~~L~l~ 158 (225)
++|+.|++++|.+...-....+..+++|+.|++.+|.+... .. ..+.. +|+|+.|+-.
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~-lP~Lk~LD~~ 148 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYK-LPSLKVLDGQ 148 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH--TT-SEETTE
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHH-cChhheeCCE
Confidence 89999999999887333334677788999999999887632 22 33444 8899988753
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.26 E-value=1e-11 Score=108.04 Aligned_cols=151 Identities=21% Similarity=0.170 Sum_probs=88.3
Q ss_pred CCccEEEccCCcccCcchhhHH------------HHHhcC-CCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCC
Q 045865 48 QQLESLDLTQNKIAGCVENEGI------------ERLSRL-NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEG 114 (225)
Q Consensus 48 ~~L~~L~l~~n~i~~~~~~~~~------------~~~~~l-~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 114 (225)
+.|+.|++++|.+.. +|.... ..+..+ .+|+.|++++|.+.. +|.. ..+|+.|++++|.+.
T Consensus 302 ~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~- 375 (788)
T PRK15387 302 PGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT- 375 (788)
T ss_pred cccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccCC-CCCC---Ccccceehhhccccc-
Confidence 567788888877765 222000 000000 134444444444433 1211 123444444444443
Q ss_pred ccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHH
Q 045865 115 SIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFL 194 (225)
Q Consensus 115 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~ 194 (225)
.+|. ...+|+.|++++|.+.. +|. . .++|+.|++++|.++ .+|. . ..+|+.|++++|++ ..+|
T Consensus 376 ~LP~----l~~~L~~LdLs~N~Lt~-LP~---l-~s~L~~LdLS~N~Ls-sIP~-l---~~~L~~L~Ls~NqL---t~LP 438 (788)
T PRK15387 376 SLPA----LPSGLKELIVSGNRLTS-LPV---L-PSELKELMVSGNRLT-SLPM-L---PSGLLSLSVYRNQL---TRLP 438 (788)
T ss_pred cCcc----cccccceEEecCCcccC-CCC---c-ccCCCEEEccCCcCC-CCCc-c---hhhhhhhhhccCcc---cccC
Confidence 2332 12356777777777652 222 1 356777888888776 3443 2 24577888888866 4678
Q ss_pred HHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865 195 QIIGESMPSLKYLLLSYSTLGTNSSRIL 222 (225)
Q Consensus 195 ~~l~~~~~~L~~L~l~~n~l~~~~~~~~ 222 (225)
..+.. +++|+.|++++|+|++..|..+
T Consensus 439 ~sl~~-L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 439 ESLIH-LSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hHHhh-ccCCCeEECCCCCCCchHHHHH
Confidence 88888 9999999999999999887765
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.25 E-value=4.9e-11 Score=102.96 Aligned_cols=119 Identities=29% Similarity=0.399 Sum_probs=88.4
Q ss_pred CCCceeecCCc----CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECC
Q 045865 9 QWERVECSNTT----GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLS 84 (225)
Q Consensus 9 ~~~~~~~~~~~----~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~ 84 (225)
.|.|+.|.... ..++.|+|+++.+. ...+..+.++++|+.|++++|.+.+..|. .+..+++|+.|+++
T Consensus 403 ~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~----g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs 474 (623)
T PLN03150 403 PWSGADCQFDSTKGKWFIDGLGLDNQGLR----GFIPNDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLS 474 (623)
T ss_pred ccccceeeccCCCCceEEEEEECCCCCcc----ccCCHHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECC
Confidence 79999996321 24788888888876 33445677888888888888888877776 57888888888888
Q ss_pred CCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhcc-CCCCceeecCCCC
Q 045865 85 GNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHN-FTNLEYLTLESSS 136 (225)
Q Consensus 85 ~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~-l~~L~~l~l~~~~ 136 (225)
+|.+.+..|..+..+++|+.|++++|.+.+.+|. .+.. ..++..+++.+|.
T Consensus 475 ~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 475 YNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA-ALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCCCCCCchHHhcCCCCCEEECcCCcccccCCh-HHhhccccCceEEecCCc
Confidence 8888887888888888888888888888777775 3433 2345566666554
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=5e-12 Score=100.53 Aligned_cols=193 Identities=21% Similarity=0.220 Sum_probs=141.4
Q ss_pred cCCcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChh-hHH
Q 045865 16 SNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNS-ILS 94 (225)
Q Consensus 16 ~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~ 94 (225)
.....+++.||++.|-+. -|....+..+.+++|+.|+++.|.+.-..... .-..+++|+.|.++.|+++.. +..
T Consensus 142 ~k~~~~v~~LdLS~NL~~--nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~---~~~~l~~lK~L~l~~CGls~k~V~~ 216 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFH--NWFPVLKIAEQLPSLENLNLSSNRLSNFISSN---TTLLLSHLKQLVLNSCGLSWKDVQW 216 (505)
T ss_pred hhhCCcceeecchhhhHH--hHHHHHHHHHhcccchhcccccccccCCcccc---chhhhhhhheEEeccCCCCHHHHHH
Confidence 334568999999999875 35667788899999999999999876433322 234688999999999999753 345
Q ss_pred hhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHH-HHHHHhhCCCCCEEeccccccccccccCC---
Q 045865 95 SLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISL-LQSIASIFPSLKNLSMSFCEVNGVVRGQG--- 170 (225)
Q Consensus 95 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~--- 170 (225)
.+..+|+|+.|++..|........ ....++.|+.|+|++|.+.+.- ...... ++.|+.|+++.+.+...-....
T Consensus 217 ~~~~fPsl~~L~L~~N~~~~~~~~-~~~i~~~L~~LdLs~N~li~~~~~~~~~~-l~~L~~Lnls~tgi~si~~~d~~s~ 294 (505)
T KOG3207|consen 217 ILLTFPSLEVLYLEANEIILIKAT-STKILQTLQELDLSNNNLIDFDQGYKVGT-LPGLNQLNLSSTGIASIAEPDVESL 294 (505)
T ss_pred HHHhCCcHHHhhhhcccccceecc-hhhhhhHHhhccccCCccccccccccccc-ccchhhhhccccCcchhcCCCccch
Confidence 566789999999999952212111 4445678999999999876332 244555 8999999999998863211111
Q ss_pred --CCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCc
Q 045865 171 --FPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTN 217 (225)
Q Consensus 171 --~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~ 217 (225)
....++|+.|++..|+|..+.++- .+.. +++|+.|.+..|.|+.+
T Consensus 295 ~kt~~f~kL~~L~i~~N~I~~w~sl~-~l~~-l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 295 DKTHTFPKLEYLNISENNIRDWRSLN-HLRT-LENLKHLRITLNYLNKE 341 (505)
T ss_pred hhhcccccceeeecccCccccccccc-hhhc-cchhhhhhccccccccc
Confidence 346789999999999875565543 3455 88899999999988754
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.23 E-value=9.6e-12 Score=108.41 Aligned_cols=141 Identities=21% Similarity=0.263 Sum_probs=67.5
Q ss_pred ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865 21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 100 (225)
Q Consensus 21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~ 100 (225)
+++.|++++|.+. .++.... +.|+.|++++|.+.. +|. .+. .+|+.|++++|.+.. +|..+. .
T Consensus 221 nL~~L~Ls~N~Lt----sLP~~l~---~~L~~L~Ls~N~L~~-LP~----~l~--s~L~~L~Ls~N~L~~-LP~~l~--~ 283 (754)
T PRK15370 221 NIKTLYANSNQLT----SIPATLP---DTIQEMELSINRITE-LPE----RLP--SALQSLDLFHNKISC-LPENLP--E 283 (754)
T ss_pred CCCEEECCCCccc----cCChhhh---ccccEEECcCCccCc-CCh----hHh--CCCCEEECcCCccCc-cccccC--C
Confidence 5667777777665 3333221 245556666665553 333 121 345555555555543 233221 2
Q ss_pred CCCEEEcCCCCCCCccchhh-------------h-----ccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEecccccc
Q 045865 101 SLRSLNLLWNRLEGSIDVKE-------------L-----HNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEV 162 (225)
Q Consensus 101 ~L~~L~l~~n~~~~~~~~~~-------------~-----~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 162 (225)
+|+.|++++|.+. .+|... + ...++|+.|++.+|.++. +|..+ .++|+.|++++|.+
T Consensus 284 sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l---~~sL~~L~Ls~N~L 358 (754)
T PRK15370 284 ELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASL---PPELQVLDVSKNQI 358 (754)
T ss_pred CCcEEECCCCccc-cCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhh---cCcccEEECCCCCC
Confidence 4555555555443 222100 0 011345666666665542 33222 24666777776666
Q ss_pred ccccccCCCCCCCCCcEEEccCCcc
Q 045865 163 NGVVRGQGFPHFKSLEHFDMRFARI 187 (225)
Q Consensus 163 ~~~~~~~~~~~~~~L~~l~l~~n~i 187 (225)
+ .+|. .+ .++|+.|++++|++
T Consensus 359 ~-~LP~-~l--p~~L~~LdLs~N~L 379 (754)
T PRK15370 359 T-VLPE-TL--PPTITTLDVSRNAL 379 (754)
T ss_pred C-cCCh-hh--cCCcCEEECCCCcC
Confidence 5 3343 22 23566666666643
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1e-11 Score=98.79 Aligned_cols=165 Identities=26% Similarity=0.312 Sum_probs=111.9
Q ss_pred cCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCCh--hhHHhhhcCCCCCEEEcCCCCCCCccchhhhc
Q 045865 45 TPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNN--SILSSLTHLSSLRSLNLLWNRLEGSIDVKELH 122 (225)
Q Consensus 45 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 122 (225)
.++.+|+++.+.++.+....... ....+++++.||+++|-+.. .+......+|+|+.|+++.|++.-......-.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~---~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEE---YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred hhHHhhhheeecCccccccchhh---hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence 45788999999988877644321 46789999999999997753 34566678999999999999987333332333
Q ss_pred cCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCC
Q 045865 123 NFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMP 202 (225)
Q Consensus 123 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~ 202 (225)
.++.|+.|.++.|++++.....+...+|+|+.|.+..|........ ....+..|+.||+++|++.....++ ..+. ++
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~-~~~i~~~L~~LdLs~N~li~~~~~~-~~~~-l~ 271 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT-STKILQTLQELDLSNNNLIDFDQGY-KVGT-LP 271 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc-hhhhhhHHhhccccCCccccccccc-cccc-cc
Confidence 5678999999999998776655544489999999998842212112 3344566777777777553333222 2344 55
Q ss_pred CCcEEEccCCcCC
Q 045865 203 SLKYLLLSYSTLG 215 (225)
Q Consensus 203 ~L~~L~l~~n~l~ 215 (225)
.|..|+++.+.++
T Consensus 272 ~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 272 GLNQLNLSSTGIA 284 (505)
T ss_pred chhhhhccccCcc
Confidence 6666666665554
No 30
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=5.6e-11 Score=90.66 Aligned_cols=191 Identities=21% Similarity=0.256 Sum_probs=140.8
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHH-hcCCCCCEEECCCCCCChhhH-Hhh
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERL-SRLNNLKMLNLSGNSFNNSIL-SSL 96 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~-~~l 96 (225)
..+|+++||.+|.+. .|+-++..+.+++.|++|+++.|.+...+.. + ....+|+.|.+.+.++..... ..+
T Consensus 70 ~~~v~elDL~~N~iS--dWseI~~ile~lP~l~~LNls~N~L~s~I~~-----lp~p~~nl~~lVLNgT~L~w~~~~s~l 142 (418)
T KOG2982|consen 70 VTDVKELDLTGNLIS--DWSEIGAILEQLPALTTLNLSCNSLSSDIKS-----LPLPLKNLRVLVLNGTGLSWTQSTSSL 142 (418)
T ss_pred hhhhhhhhcccchhc--cHHHHHHHHhcCccceEeeccCCcCCCcccc-----CcccccceEEEEEcCCCCChhhhhhhh
Confidence 458899999999885 6788999999999999999999998764433 2 345699999999998875433 445
Q ss_pred hcCCCCCEEEcCCCCCCCc-cchhhhcc-CCCCceeecCCCCCc-HHHHHHHHhhCCCCCEEeccccccccccccCCCCC
Q 045865 97 THLSSLRSLNLLWNRLEGS-IDVKELHN-FTNLEYLTLESSSLH-ISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPH 173 (225)
Q Consensus 97 ~~l~~L~~L~l~~n~~~~~-~~~~~~~~-l~~L~~l~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 173 (225)
..+|.++.|.++.|.+... ...+.... .+.+++++..+|... +.....+...+|++..+.+..|+++.......+..
T Consensus 143 ~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~ 222 (418)
T KOG2982|consen 143 DDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEP 222 (418)
T ss_pred hcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCC
Confidence 5688899999988854311 11111222 236777888877643 23333444448999999999999876666557777
Q ss_pred CCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCcc
Q 045865 174 FKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNS 218 (225)
Q Consensus 174 ~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~ 218 (225)
.+.+.-|+++.++|..+.+ ..++.+ ++.|..|.+..+++.+.+
T Consensus 223 ~p~~~~LnL~~~~idswas-vD~Ln~-f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 223 FPSLSCLNLGANNIDSWAS-VDALNG-FPQLVDLRVSENPLSDPL 265 (418)
T ss_pred CCcchhhhhcccccccHHH-HHHHcC-CchhheeeccCCcccccc
Confidence 8888999999998866655 356788 999999999999987643
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=8.3e-11 Score=96.61 Aligned_cols=180 Identities=28% Similarity=0.402 Sum_probs=120.7
Q ss_pred ceEEeeccccccccchhHHhhhhhcCCC-CccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865 21 RVIALDLSYIYSGEYSWYLNASLFTPFQ-QLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 99 (225)
Q Consensus 21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 99 (225)
.++.+++.++++. .+++ ....++ .|+.|++++|.+.. .+. .+..++.|+.|+++.|++.. .+......
T Consensus 117 ~l~~L~l~~n~i~----~i~~-~~~~~~~nL~~L~l~~N~i~~-l~~----~~~~l~~L~~L~l~~N~l~~-l~~~~~~~ 185 (394)
T COG4886 117 NLTSLDLDNNNIT----DIPP-LIGLLKSNLKELDLSDNKIES-LPS----PLRNLPNLKNLDLSFNDLSD-LPKLLSNL 185 (394)
T ss_pred ceeEEecCCcccc----cCcc-ccccchhhcccccccccchhh-hhh----hhhccccccccccCCchhhh-hhhhhhhh
Confidence 4667777777765 3333 224443 67777888877765 322 36777888888888887766 33333366
Q ss_pred CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcE
Q 045865 100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEH 179 (225)
Q Consensus 100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 179 (225)
+.|+.|++++|.+. .+|. .......|+.+.+++|.+. ..+..+.. +.++..+.+..|.+.. .+. .++.+..++.
T Consensus 186 ~~L~~L~ls~N~i~-~l~~-~~~~~~~L~~l~~~~N~~~-~~~~~~~~-~~~l~~l~l~~n~~~~-~~~-~~~~l~~l~~ 259 (394)
T COG4886 186 SNLNNLDLSGNKIS-DLPP-EIELLSALEELDLSNNSII-ELLSSLSN-LKNLSGLELSNNKLED-LPE-SIGNLSNLET 259 (394)
T ss_pred hhhhheeccCCccc-cCch-hhhhhhhhhhhhhcCCcce-ecchhhhh-cccccccccCCceeee-ccc-hhccccccce
Confidence 77888888888776 5554 3334455777888877432 23444555 6777777777777652 233 6778888999
Q ss_pred EEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865 180 FDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL 222 (225)
Q Consensus 180 l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~ 222 (225)
+++++|.+ ..++. ++. ..+++.|++++|.++...|...
T Consensus 260 L~~s~n~i---~~i~~-~~~-~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 260 LDLSNNQI---SSISS-LGS-LTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred eccccccc---ccccc-ccc-cCccCEEeccCccccccchhhh
Confidence 99999966 23333 666 8899999999999987766544
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=4e-11 Score=91.71 Aligned_cols=132 Identities=25% Similarity=0.360 Sum_probs=99.0
Q ss_pred CCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEE
Q 045865 76 NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNL 155 (225)
Q Consensus 76 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L 155 (225)
+.|.++|+++|.|+. ..++..-.|.++.|+++.|.+. .+. .++.+++|..|++++|.+. ....+-.. +-+++.|
T Consensus 284 q~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~K-LGNIKtL 357 (490)
T KOG1259|consen 284 QELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLK-LGNIKTL 357 (490)
T ss_pred hhhhhccccccchhh-hhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhH-hhhhhHhh-hcCEeee
Confidence 367888888888865 3455556788999999999886 444 5778888999999998875 33333334 7788899
Q ss_pred eccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCcc
Q 045865 156 SMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNS 218 (225)
Q Consensus 156 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~ 218 (225)
.++.|.+... +.++.+-+|..||+++|+|...++ ...+++ +|.|+.+.+.+|++.+.+
T Consensus 358 ~La~N~iE~L---SGL~KLYSLvnLDl~~N~Ie~lde-V~~IG~-LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 358 KLAQNKIETL---SGLRKLYSLVNLDLSSNQIEELDE-VNHIGN-LPCLETLRLTGNPLAGSV 415 (490)
T ss_pred ehhhhhHhhh---hhhHhhhhheeccccccchhhHHH-hccccc-ccHHHHHhhcCCCccccc
Confidence 9999887522 257778889999999998754443 456788 999999999999988654
No 33
>PLN03150 hypothetical protein; Provisional
Probab=99.02 E-value=1.3e-09 Score=94.21 Aligned_cols=107 Identities=29% Similarity=0.447 Sum_probs=52.9
Q ss_pred ccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCce
Q 045865 50 LESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEY 129 (225)
Q Consensus 50 L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 129 (225)
++.|++++|.+.+..|. .+..+++|+.|++++|.+.+..|..+..++.|+.|++++|.+.+.+|. .+..+++|+.
T Consensus 420 v~~L~L~~n~L~g~ip~----~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPN----DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLRI 494 (623)
T ss_pred EEEEECCCCCccccCCH----HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCCE
Confidence 44455555555544444 345555555555555555544555555555555555555555444443 4455555555
Q ss_pred eecCCCCCcHHHHHHHHhhCCCCCEEeccccc
Q 045865 130 LTLESSSLHISLLQSIASIFPSLKNLSMSFCE 161 (225)
Q Consensus 130 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 161 (225)
|++++|.+.+.+|..+.....++..+++.+|.
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCCc
Confidence 55555555544444443312234444444443
No 34
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.02 E-value=1e-09 Score=95.74 Aligned_cols=12 Identities=8% Similarity=0.277 Sum_probs=8.7
Q ss_pred CCcEEEccCCcc
Q 045865 176 SLEHFDMRFARI 187 (225)
Q Consensus 176 ~L~~l~l~~n~i 187 (225)
+|+.|++++|++
T Consensus 343 ~Lq~LdLS~N~L 354 (788)
T PRK15387 343 GLQELSVSDNQL 354 (788)
T ss_pred ccceEecCCCcc
Confidence 577777777755
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=5.6e-11 Score=90.91 Aligned_cols=133 Identities=23% Similarity=0.273 Sum_probs=107.7
Q ss_pred hcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhcc
Q 045865 44 FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHN 123 (225)
Q Consensus 44 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 123 (225)
+..++.|+++++++|.|.. +.. .+.-.|.++.|+++.|.+... ..+..+++|+.||+++|.+. .... --..
T Consensus 280 ~dTWq~LtelDLS~N~I~~-iDE----SvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~G-wh~K 350 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQ-IDE----SVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVG-WHLK 350 (490)
T ss_pred cchHhhhhhccccccchhh-hhh----hhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhh-hHhh
Confidence 3446789999999999987 444 577889999999999999653 44888999999999999887 4443 3346
Q ss_pred CCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccc
Q 045865 124 FTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIA 188 (225)
Q Consensus 124 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~ 188 (225)
+.+++.|.+.+|.+. ....+.. +.+|..|++.+|+|........+++++.|+++.+.+|.+.
T Consensus 351 LGNIKtL~La~N~iE--~LSGL~K-LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIE--TLSGLRK-LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hcCEeeeehhhhhHh--hhhhhHh-hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 789999999999885 3456777 8889999999999975544458999999999999999763
No 36
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.95 E-value=7.4e-09 Score=78.35 Aligned_cols=197 Identities=17% Similarity=0.143 Sum_probs=96.8
Q ss_pred CceEEeeccccccccchhHHhhhhhc----------------------------------CCCCccEEEccCCcccCcch
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFT----------------------------------PFQQLESLDLTQNKIAGCVE 65 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~----------------------------------~l~~L~~L~l~~n~i~~~~~ 65 (225)
..+++++||||.+++.+..-....+. +|++++.+++++|-|....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 46788999999888643333333333 44555555555555554444
Q ss_pred hhHHHHHhcCCCCCEEECCCCCCCh----hhHHh---------hhcCCCCCEEEcCCCCCCCccch----hhhccCCCCc
Q 045865 66 NEGIERLSRLNNLKMLNLSGNSFNN----SILSS---------LTHLSSLRSLNLLWNRLEGSIDV----KELHNFTNLE 128 (225)
Q Consensus 66 ~~~~~~~~~l~~L~~L~l~~~~l~~----~~~~~---------l~~l~~L~~L~l~~n~~~~~~~~----~~~~~l~~L~ 128 (225)
+.+...++....|.+|.+++|.+.. .+... ...-|.|+...+.+|++. ..+. ..+.....|+
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk 188 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLK 188 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCce
Confidence 4444444555555555555554421 11111 112244555555555543 2111 1222334556
Q ss_pred eeecCCCCCcHH-----HHHHHHhhCCCCCEEeccccccccccc---cCCCCCCCCCcEEEccCCccccch--hHHHHHh
Q 045865 129 YLTLESSSLHIS-----LLQSIASIFPSLKNLSMSFCEVNGVVR---GQGFPHFKSLEHFDMRFARIALNT--SFLQIIG 198 (225)
Q Consensus 129 ~l~l~~~~~~~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~L~~l~l~~n~i~~~~--~~~~~l~ 198 (225)
.+.+..|.|+.. ....+.+ +.+|+.|++++|.++.... ...+..++.|+.|.+..|-++..+ ++.+.+.
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 666666655522 1123444 5667777777776652111 124555666666666666332221 2222221
Q ss_pred -hcCCCCcEEEccCCcCCCcc
Q 045865 199 -ESMPSLKYLLLSYSTLGTNS 218 (225)
Q Consensus 199 -~~~~~L~~L~l~~n~l~~~~ 218 (225)
.-.|+|+.|...+|.+.+.+
T Consensus 268 e~~~p~l~~L~~~Yne~~~~~ 288 (388)
T COG5238 268 EKFVPNLMPLPGDYNERRGGI 288 (388)
T ss_pred hhcCCCccccccchhhhcCce
Confidence 11556667777766665543
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1e-10 Score=89.26 Aligned_cols=185 Identities=24% Similarity=0.232 Sum_probs=112.4
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCC-CChh-hHHhh
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNS-FNNS-ILSSL 96 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~-~~~~l 96 (225)
.++++.+||+.-.+... + .-..+..+++|+-|++.++.+.+.+.. .+.+..+|+.|+++++. ++.. ..-.+
T Consensus 184 rsRlq~lDLS~s~it~s--t-l~~iLs~C~kLk~lSlEg~~LdD~I~~----~iAkN~~L~~lnlsm~sG~t~n~~~ll~ 256 (419)
T KOG2120|consen 184 RSRLQHLDLSNSVITVS--T-LHGILSQCSKLKNLSLEGLRLDDPIVN----TIAKNSNLVRLNLSMCSGFTENALQLLL 256 (419)
T ss_pred hhhhHHhhcchhheeHH--H-HHHHHHHHHhhhhccccccccCcHHHH----HHhccccceeeccccccccchhHHHHHH
Confidence 35688889998877642 2 233667788999999999888765554 68889999999998874 4432 33456
Q ss_pred hcCCCCCEEEcCCCCCCCccchhhhccC-CCCceeecCCCCCc--HHHHHHHHhhCCCCCEEeccccccccccccCCCCC
Q 045865 97 THLSSLRSLNLLWNRLEGSIDVKELHNF-TNLEYLTLESSSLH--ISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPH 173 (225)
Q Consensus 97 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~l~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 173 (225)
..+..|+.|+++++....+.-...+... .+|+.|++++++-. ......+...+++|.+|++++|........+.|.+
T Consensus 257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence 6788999999999987633221122222 35677777765421 12233333337777777777764321112225556
Q ss_pred CCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCC
Q 045865 174 FKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYS 212 (225)
Q Consensus 174 ~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n 212 (225)
++.|+++.++.|- .+..+..-.+.. +|.|..|++-++
T Consensus 337 f~~L~~lSlsRCY-~i~p~~~~~l~s-~psl~yLdv~g~ 373 (419)
T KOG2120|consen 337 FNYLQHLSLSRCY-DIIPETLLELNS-KPSLVYLDVFGC 373 (419)
T ss_pred cchheeeehhhhc-CCChHHeeeecc-CcceEEEEeccc
Confidence 6666777666662 111222223344 666666666554
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.87 E-value=2e-09 Score=88.48 Aligned_cols=174 Identities=28% Similarity=0.399 Sum_probs=128.8
Q ss_pred EeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCC-CCCEEECCCCCCChhhHHhhhcCCCC
Q 045865 24 ALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLN-NLKMLNLSGNSFNNSILSSLTHLSSL 102 (225)
Q Consensus 24 ~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~l~~l~~L 102 (225)
.++...+.+.. ....+..++.++.|++.+|.+... ++ ....+. +|+.|++++|.+.. .+..+..++.|
T Consensus 97 ~l~~~~~~~~~-----~~~~~~~~~~l~~L~l~~n~i~~i-~~----~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L 165 (394)
T COG4886 97 SLDLNLNRLRS-----NISELLELTNLTSLDLDNNNITDI-PP----LIGLLKSNLKELDLSDNKIES-LPSPLRNLPNL 165 (394)
T ss_pred eeecccccccc-----CchhhhcccceeEEecCCcccccC-cc----ccccchhhcccccccccchhh-hhhhhhccccc
Confidence 35555555421 222334557899999999999874 43 245553 89999999999876 44677889999
Q ss_pred CEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEc
Q 045865 103 RSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDM 182 (225)
Q Consensus 103 ~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l 182 (225)
+.|+++.|.+. .++. .......|+.+++++|.+. .++..... ...|+++.++.|.+. ..+. .+.++..+..+.+
T Consensus 166 ~~L~l~~N~l~-~l~~-~~~~~~~L~~L~ls~N~i~-~l~~~~~~-~~~L~~l~~~~N~~~-~~~~-~~~~~~~l~~l~l 239 (394)
T COG4886 166 KNLDLSFNDLS-DLPK-LLSNLSNLNNLDLSGNKIS-DLPPEIEL-LSALEELDLSNNSII-ELLS-SLSNLKNLSGLEL 239 (394)
T ss_pred cccccCCchhh-hhhh-hhhhhhhhhheeccCCccc-cCchhhhh-hhhhhhhhhcCCcce-ecch-hhhhccccccccc
Confidence 99999999997 6664 4447889999999999987 44544443 566999999999643 3344 6788888899888
Q ss_pred cCCccccchhHHHHHhhcCCCCcEEEccCCcCCCcc
Q 045865 183 RFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNS 218 (225)
Q Consensus 183 ~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~ 218 (225)
..|++. .++..++. +++++.|++++|.++...
T Consensus 240 ~~n~~~---~~~~~~~~-l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 240 SNNKLE---DLPESIGN-LSNLETLDLSNNQISSIS 271 (394)
T ss_pred CCceee---eccchhcc-ccccceeccccccccccc
Confidence 999652 22556677 889999999999998554
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.78 E-value=4.9e-11 Score=97.98 Aligned_cols=176 Identities=22% Similarity=0.259 Sum_probs=133.7
Q ss_pred eeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCE
Q 045865 25 LDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRS 104 (225)
Q Consensus 25 l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~ 104 (225)
|.|++-++... ...+.. ..+......+++.|++.. +|. .++.+..|..+.++.|.+-. .|..+..+..|.+
T Consensus 55 l~Ls~rrlk~f--pr~a~~-~~ltdt~~aDlsrNR~~e-lp~----~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~ 125 (722)
T KOG0532|consen 55 LLLSGRRLKEF--PRGAAS-YDLTDTVFADLSRNRFSE-LPE----EACAFVSLESLILYHNCIRT-IPEAICNLEALTF 125 (722)
T ss_pred cccccchhhcC--CCcccc-ccccchhhhhcccccccc-Cch----HHHHHHHHHHHHHHhcccee-cchhhhhhhHHHH
Confidence 55555555421 112222 345566678899999887 565 46667788888888887754 6788889999999
Q ss_pred EEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccC
Q 045865 105 LNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRF 184 (225)
Q Consensus 105 L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~ 184 (225)
++++.|.+. .+|. .+..++ |+.+.+++|++. .+|..++. ...|..|+.+.|.+. ..+. -++++.+|+.+.+..
T Consensus 126 l~ls~NqlS-~lp~-~lC~lp-Lkvli~sNNkl~-~lp~~ig~-~~tl~~ld~s~nei~-slps-ql~~l~slr~l~vrR 198 (722)
T KOG0532|consen 126 LDLSSNQLS-HLPD-GLCDLP-LKVLIVSNNKLT-SLPEEIGL-LPTLAHLDVSKNEIQ-SLPS-QLGYLTSLRDLNVRR 198 (722)
T ss_pred hhhccchhh-cCCh-hhhcCc-ceeEEEecCccc-cCCccccc-chhHHHhhhhhhhhh-hchH-HhhhHHHHHHHHHhh
Confidence 999999997 7776 665554 899999999886 56777775 889999999999986 5565 688999999999999
Q ss_pred CccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865 185 ARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL 222 (225)
Q Consensus 185 n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~ 222 (225)
|++ ..+|..+.. ++ |.+||++.|+++. +|..|
T Consensus 199 n~l---~~lp~El~~-Lp-Li~lDfScNkis~-iPv~f 230 (722)
T KOG0532|consen 199 NHL---EDLPEELCS-LP-LIRLDFSCNKISY-LPVDF 230 (722)
T ss_pred hhh---hhCCHHHhC-Cc-eeeeecccCceee-cchhh
Confidence 976 677888875 65 8899999999994 44443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=3.9e-09 Score=62.93 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=9.4
Q ss_pred HhhhhhcCCCCccEEEccCCccc
Q 045865 39 LNASLFTPFQQLESLDLTQNKIA 61 (225)
Q Consensus 39 ~~~~~~~~l~~L~~L~l~~n~i~ 61 (225)
+++..|.++++|++|++++|.+.
T Consensus 16 i~~~~f~~l~~L~~L~l~~N~l~ 38 (61)
T PF13855_consen 16 IPPDSFSNLPNLETLDLSNNNLT 38 (61)
T ss_dssp ECTTTTTTGTTESEEEETSSSES
T ss_pred cCHHHHcCCCCCCEeEccCCccC
Confidence 33334444444444444444443
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=3.8e-09 Score=63.01 Aligned_cols=61 Identities=38% Similarity=0.518 Sum_probs=54.6
Q ss_pred CCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCC
Q 045865 48 QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRL 112 (225)
Q Consensus 48 ~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~ 112 (225)
++|++|++++|.+....+. .|..+++|++|++++|.+....+..|..+++|+++++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~----~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPD----SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTT----TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHH----HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999875444 688999999999999999988888999999999999999974
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=6.5e-08 Score=74.22 Aligned_cols=169 Identities=21% Similarity=0.207 Sum_probs=116.5
Q ss_pred CCCccEEEccCCcccCcchhhHHHHHh-cCCCCCEEECCCCCCCh--hhHHhhhcCCCCCEEEcCCCCCCCccchhhhcc
Q 045865 47 FQQLESLDLTQNKIAGCVENEGIERLS-RLNNLKMLNLSGNSFNN--SILSSLTHLSSLRSLNLLWNRLEGSIDVKELHN 123 (225)
Q Consensus 47 l~~L~~L~l~~n~i~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 123 (225)
.+.++.+-+.++.|....... .|+ .+..++.+|+.+|.+++ .+...+.++|.|+.|+++.|.+.+.+.. ....
T Consensus 44 ~ra~ellvln~~~id~~gd~~---~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~-lp~p 119 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVM---LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS-LPLP 119 (418)
T ss_pred ccchhhheecCCCCCcchhHH---HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc-Cccc
Confidence 344556666777765433322 333 57899999999999974 3445566899999999999998755543 2246
Q ss_pred CCCCceeecCCCCCcHHHHHHHHhhCCCCCEEecccccccccccc-CCCCC-CCCCcEEEccCCccccchhHHHHHhhcC
Q 045865 124 FTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRG-QGFPH-FKSLEHFDMRFARIALNTSFLQIIGESM 201 (225)
Q Consensus 124 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~-~~~L~~l~l~~n~i~~~~~~~~~l~~~~ 201 (225)
..+|+++.|+++.+.+.....+...+|.+++|+++.|.......+ ..... .+.+.++++..|....+....+.-.. +
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~-F 198 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI-F 198 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh-c
Confidence 779999999999988776655544489999999999954311111 11222 23677888888866666665554444 8
Q ss_pred CCCcEEEccCCcCCCccch
Q 045865 202 PSLKYLLLSYSTLGTNSSR 220 (225)
Q Consensus 202 ~~L~~L~l~~n~l~~~~~~ 220 (225)
+++..+.+..|++.....+
T Consensus 199 pnv~sv~v~e~PlK~~s~e 217 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSE 217 (418)
T ss_pred ccchheeeecCcccchhhc
Confidence 8999999999988765443
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.61 E-value=2.5e-08 Score=88.77 Aligned_cols=91 Identities=26% Similarity=0.312 Sum_probs=43.7
Q ss_pred HHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccc
Q 045865 38 YLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSID 117 (225)
Q Consensus 38 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 117 (225)
.++...|..++.|.+||+++|.=....|. .++.+-+||+|+++++.+.. +|..+..+..|.+|++..+.....++
T Consensus 561 ~is~~ff~~m~~LrVLDLs~~~~l~~LP~----~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 561 EISGEFFRSLPLLRVLDLSGNSSLSKLPS----SIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred hcCHHHHhhCcceEEEECCCCCccCcCCh----HHhhhhhhhcccccCCCccc-cchHHHHHHhhheecccccccccccc
Confidence 33444455555555555554433333444 35555555555555555543 45555555555555555544332222
Q ss_pred hhhhccCCCCceeecCC
Q 045865 118 VKELHNFTNLEYLTLES 134 (225)
Q Consensus 118 ~~~~~~l~~L~~l~l~~ 134 (225)
. ....+++|++|.+..
T Consensus 636 ~-i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 636 G-ILLELQSLRVLRLPR 651 (889)
T ss_pred c-hhhhcccccEEEeec
Confidence 1 333355555555543
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.3e-08 Score=78.03 Aligned_cols=161 Identities=23% Similarity=0.188 Sum_probs=103.0
Q ss_pred CccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccc-hhhhccCCCC
Q 045865 49 QLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSID-VKELHNFTNL 127 (225)
Q Consensus 49 ~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L 127 (225)
.++.||++...|+...-.. .+..+.+|+.|.+.++.+.+.+...++.-..|+.++++.+.-..... .-.+..++.|
T Consensus 186 Rlq~lDLS~s~it~stl~~---iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHG---ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHHHH---HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 3666777776665322221 35667788888888888877667777777788888887764221222 1145567778
Q ss_pred ceeecCCCCCcHHHH-HHHHhhCCCCCEEecccccc--ccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCC
Q 045865 128 EYLTLESSSLHISLL-QSIASIFPSLKNLSMSFCEV--NGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSL 204 (225)
Q Consensus 128 ~~l~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~--~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L 204 (225)
..|++++|....... ..+.+.-++|..|+++++.- ...-.......+++|.+||+++|. .+......++.+ ++.|
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v-~l~~~~~~~~~k-f~~L 340 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV-MLKNDCFQEFFK-FNYL 340 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc-ccCchHHHHHHh-cchh
Confidence 888888876543322 22333235677777777641 111111134578899999999885 455577778888 9999
Q ss_pred cEEEccCCcC
Q 045865 205 KYLLLSYSTL 214 (225)
Q Consensus 205 ~~L~l~~n~l 214 (225)
+.|+++.|..
T Consensus 341 ~~lSlsRCY~ 350 (419)
T KOG2120|consen 341 QHLSLSRCYD 350 (419)
T ss_pred eeeehhhhcC
Confidence 9999988854
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.41 E-value=3.9e-08 Score=81.39 Aligned_cols=175 Identities=24% Similarity=0.268 Sum_probs=97.6
Q ss_pred eEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCC
Q 045865 22 VIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 101 (225)
Q Consensus 22 v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~ 101 (225)
+..+++..|.+. + ....+..+++++.|++.+|.|...... +..+++|++|++++|.|+.. ..+..+..
T Consensus 74 l~~l~l~~n~i~----~-~~~~l~~~~~l~~l~l~~n~i~~i~~~-----l~~~~~L~~L~ls~N~I~~i--~~l~~l~~ 141 (414)
T KOG0531|consen 74 LKELNLRQNLIA----K-ILNHLSKLKSLEALDLYDNKIEKIENL-----LSSLVNLQVLDLSFNKITKL--EGLSTLTL 141 (414)
T ss_pred HHhhccchhhhh----h-hhcccccccceeeeeccccchhhcccc-----hhhhhcchheeccccccccc--cchhhccc
Confidence 344555555543 1 223356677777777777777653321 45677777777777777653 23344555
Q ss_pred CCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEecccccccccccc-------------
Q 045865 102 LRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRG------------- 168 (225)
Q Consensus 102 L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~------------- 168 (225)
|+.|++.+|.+. .+. .+..+..|+.+++++|.+.......... +.+++.+.+.+|.+......
T Consensus 142 L~~L~l~~N~i~-~~~--~~~~l~~L~~l~l~~n~i~~ie~~~~~~-~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~ 217 (414)
T KOG0531|consen 142 LKELNLSGNLIS-DIS--GLESLKSLKLLDLSYNRIVDIENDELSE-LISLEELDLGGNSIREIEGLDLLKKLVLLSLLD 217 (414)
T ss_pred hhhheeccCcch-hcc--CCccchhhhcccCCcchhhhhhhhhhhh-ccchHHHhccCCchhcccchHHHHHHHHhhccc
Confidence 777777777775 333 4444667777777777765332200233 66677777777765411100
Q ss_pred ------CCCCCCCC--CcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCC
Q 045865 169 ------QGFPHFKS--LEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGT 216 (225)
Q Consensus 169 ------~~~~~~~~--L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~ 216 (225)
..+..... |+.+++++|++. ..+..+.. +..+..+++.+|+++.
T Consensus 218 n~i~~~~~l~~~~~~~L~~l~l~~n~i~---~~~~~~~~-~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 218 NKISKLEGLNELVMLHLRELYLSGNRIS---RSPEGLEN-LKNLPVLDLSSNRISN 269 (414)
T ss_pred ccceeccCcccchhHHHHHHhcccCccc---cccccccc-cccccccchhhccccc
Confidence 01111111 566666666542 22233444 6667777777776653
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.39 E-value=6.5e-07 Score=79.96 Aligned_cols=128 Identities=25% Similarity=0.254 Sum_probs=87.8
Q ss_pred ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCc--ccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865 21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNK--IAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98 (225)
Q Consensus 21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~--i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~ 98 (225)
.++++++-++.+. .+.. . ...+.|++|-+..|. +...... -|..+|.|+.||+++|.-...+|..++.
T Consensus 524 ~~rr~s~~~~~~~----~~~~-~-~~~~~L~tLll~~n~~~l~~is~~----ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE----HIAG-S-SENPKLRTLLLQRNSDWLLEISGE----FFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred heeEEEEeccchh----hccC-C-CCCCccceEEEeecchhhhhcCHH----HHhhCcceEEEECCCCCccCcCChHHhh
Confidence 5566666666553 2211 1 234467777777775 3332222 3677888888888887766668888888
Q ss_pred CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccc
Q 045865 99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCE 161 (225)
Q Consensus 99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 161 (225)
+.+|++|+++++.+. .+|. .+..+..|.+|++..+......+..... +.+|+.|.+....
T Consensus 594 Li~LryL~L~~t~I~-~LP~-~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~-L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGIS-HLPS-GLGNLKKLIYLNLEVTGRLESIPGILLE-LQSLRVLRLPRSA 653 (889)
T ss_pred hhhhhcccccCCCcc-ccch-HHHHHHhhheeccccccccccccchhhh-cccccEEEeeccc
Confidence 888888888888886 7777 8888888888888876654444555555 7888888776654
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.38 E-value=4.6e-07 Score=68.86 Aligned_cols=197 Identities=16% Similarity=0.147 Sum_probs=131.8
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHH---------HHHhcCCCCCEEECCCCCCC
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGI---------ERLSRLNNLKMLNLSGNSFN 89 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~---------~~~~~l~~L~~L~l~~~~l~ 89 (225)
+++++.++||.|-++..+.......+++-..|..|.+++|.+.......+. +....-|.|+..+...|.+.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 468999999999998765555666777888899999999987543222111 12345689999999999885
Q ss_pred h----hhHHhhhcCCCCCEEEcCCCCCCCc----cchhhhccCCCCceeecCCCCCcHH----HHHHHHhhCCCCCEEec
Q 045865 90 N----SILSSLTHLSSLRSLNLLWNRLEGS----IDVKELHNFTNLEYLTLESSSLHIS----LLQSIASIFPSLKNLSM 157 (225)
Q Consensus 90 ~----~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~~L~~L~l 157 (225)
. .....+.....|+.+.+..|.+... +.-..+.-+++|+.|++.+|.++-. +...+.. |+.|++|.+
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~-W~~lrEL~l 249 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE-WNLLRELRL 249 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc-cchhhhccc
Confidence 3 2233444556899999999988633 1111344567999999999988732 3455666 888999999
Q ss_pred cccccccccccCC---CC--CCCCCcEEEccCCcccc----chhHHHHHhhcCCCCcEEEccCCcCCC
Q 045865 158 SFCEVNGVVRGQG---FP--HFKSLEHFDMRFARIAL----NTSFLQIIGESMPSLKYLLLSYSTLGT 216 (225)
Q Consensus 158 ~~n~~~~~~~~~~---~~--~~~~L~~l~l~~n~i~~----~~~~~~~l~~~~~~L~~L~l~~n~l~~ 216 (225)
.+|.++....... |. ..++|..|...+|.+.. +..++......+|-|..|.+.+|+|..
T Consensus 250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred cchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 9998764332212 22 24567777777774311 122444444447788888888888864
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.32 E-value=5e-07 Score=78.67 Aligned_cols=142 Identities=23% Similarity=0.266 Sum_probs=76.8
Q ss_pred CCCCEEECCCCCCC-hhhHHhhh-cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCC
Q 045865 76 NNLKMLNLSGNSFN-NSILSSLT-HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLK 153 (225)
Q Consensus 76 ~~L~~L~l~~~~l~-~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~ 153 (225)
.+|++|++++...- ...+..++ -+|.|+.|.+.+-.+...-......++++|..||++++.+... .++.. +++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~-LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISR-LKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhc-cccHH
Confidence 46777777665442 22233333 3577777777665543222222555667777777777766532 45555 67777
Q ss_pred EEeccccccccccccCCCCCCCCCcEEEccCCccccchhHH-H--HHhhcCCCCcEEEccCCcCCCccch
Q 045865 154 NLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFL-Q--IIGESMPSLKYLLLSYSTLGTNSSR 220 (225)
Q Consensus 154 ~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~-~--~l~~~~~~L~~L~l~~n~l~~~~~~ 220 (225)
.|.+.+-.+.....-..+.++++|+.||+|..+......+. . +-+..+|+|+.||.+++.+.+..-+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 77666655542111124556777777777765321111111 1 1123367777777777766654443
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.30 E-value=3.4e-08 Score=83.90 Aligned_cols=129 Identities=23% Similarity=0.314 Sum_probs=85.7
Q ss_pred ccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCce
Q 045865 50 LESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEY 129 (225)
Q Consensus 50 L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 129 (225)
|.+.+++.|.+.. ... .+.-++.++.|+|+.|+++.. ..+..++.|++||++.|.+. .+|.-....+ .|..
T Consensus 166 L~~a~fsyN~L~~-mD~----SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~ 236 (1096)
T KOG1859|consen 166 LATASFSYNRLVL-MDE----SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQL 236 (1096)
T ss_pred HhhhhcchhhHHh-HHH----HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hhee
Confidence 4444455555443 222 466678888888888888763 37778888888888888876 5553122222 4888
Q ss_pred eecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccc
Q 045865 130 LTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALN 190 (225)
Q Consensus 130 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~ 190 (225)
|.+.+|-++ ....+.+ +.+|+.|++++|-+.+..-...+..+..|+.|.+.+|.+...
T Consensus 237 L~lrnN~l~--tL~gie~-LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 237 LNLRNNALT--TLRGIEN-LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred eeecccHHH--hhhhHHh-hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 888888764 3456666 888888888888776543333455667788888888866443
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.28 E-value=2.7e-06 Score=74.23 Aligned_cols=153 Identities=20% Similarity=0.279 Sum_probs=102.8
Q ss_pred CCccEEEccCCccc-CcchhhHHHHH-hcCCCCCEEECCCCCCCh-hhHHhhhcCCCCCEEEcCCCCCCCccchhhhccC
Q 045865 48 QQLESLDLTQNKIA-GCVENEGIERL-SRLNNLKMLNLSGNSFNN-SILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNF 124 (225)
Q Consensus 48 ~~L~~L~l~~n~i~-~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l 124 (225)
.+|+.|++++...- ...+. .+ .-+|.|+.|.+++-.+.. .......++|+|..||++++.+. .+. .+..+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~----kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl~--GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPK----KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NLS--GISRL 194 (699)
T ss_pred HhhhhcCccccchhhccHHH----HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-CcH--HHhcc
Confidence 45777788765432 21222 23 358999999999877743 33445567899999999999887 443 78888
Q ss_pred CCCceeecCCCCCcH-HHHHHHHhhCCCCCEEecccccccccc--cc---CCCCCCCCCcEEEccCCccccchhHHHHHh
Q 045865 125 TNLEYLTLESSSLHI-SLLQSIASIFPSLKNLSMSFCEVNGVV--RG---QGFPHFKSLEHFDMRFARIALNTSFLQIIG 198 (225)
Q Consensus 125 ~~L~~l~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~---~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~ 198 (225)
++|+.|.+.+=.+.. .....++. +++|+.|+++........ .. +.-..++.|+.||.|++ .....+.+.+-
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT--di~~~~le~ll 271 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT--DINEEILEELL 271 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc--chhHHHHHHHH
Confidence 999999887755542 34567787 999999999987654221 11 12335789999999999 55566555544
Q ss_pred hcCCCCcEEEcc
Q 045865 199 ESMPSLKYLLLS 210 (225)
Q Consensus 199 ~~~~~L~~L~l~ 210 (225)
..=++|+.+.+-
T Consensus 272 ~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 272 NSHPNLQQIAAL 283 (699)
T ss_pred HhCccHhhhhhh
Confidence 435566665544
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.26 E-value=1.2e-07 Score=78.53 Aligned_cols=130 Identities=28% Similarity=0.415 Sum_probs=99.1
Q ss_pred cCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccC
Q 045865 45 TPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNF 124 (225)
Q Consensus 45 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l 124 (225)
..+..++.+++..|.+..... .+..+.+|..|++.+|.+... ...+..+++|++|+++.|.+. .+. .+..+
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~-----~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~--~l~~l 139 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILN-----HLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLE--GLSTL 139 (414)
T ss_pred HHhHhHHhhccchhhhhhhhc-----ccccccceeeeeccccchhhc-ccchhhhhcchheeccccccc-ccc--chhhc
Confidence 456677777888888865222 378899999999999999763 222678999999999999997 443 56677
Q ss_pred CCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCcc
Q 045865 125 TNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARI 187 (225)
Q Consensus 125 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i 187 (225)
..|+.|++.+|.+... ..+.. ++.|+.+++++|.+....... ...+.+++.+.+..|.+
T Consensus 140 ~~L~~L~l~~N~i~~~--~~~~~-l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 140 TLLKELNLSGNLISDI--SGLES-LKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred cchhhheeccCcchhc--cCCcc-chhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 7799999999998632 34444 788999999999987442211 47788888899999865
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.21 E-value=1.6e-07 Score=64.14 Aligned_cols=105 Identities=22% Similarity=0.285 Sum_probs=79.4
Q ss_pred EEeeccccccccchhHHhh--hhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865 23 IALDLSYIYSGEYSWYLNA--SLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 100 (225)
Q Consensus 23 ~~l~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~ 100 (225)
-.++|+.+++. ++.. ..+.+..+|+..++++|.+.. .|.. -..+++.+..|++++|.+.+ +|..+..++
T Consensus 30 h~ldLssc~lm----~i~davy~l~~~~el~~i~ls~N~fk~-fp~k---ft~kf~t~t~lNl~~neisd-vPeE~Aam~ 100 (177)
T KOG4579|consen 30 HFLDLSSCQLM----YIADAVYMLSKGYELTKISLSDNGFKK-FPKK---FTIKFPTATTLNLANNEISD-VPEELAAMP 100 (177)
T ss_pred hhcccccchhh----HHHHHHHHHhCCceEEEEecccchhhh-CCHH---Hhhccchhhhhhcchhhhhh-chHHHhhhH
Confidence 35788888776 4433 244556678888999999887 4542 23467789999999999987 677799999
Q ss_pred CCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCc
Q 045865 101 SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH 138 (225)
Q Consensus 101 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 138 (225)
.|+.+++..|.+. ..|. .+..+.++-.|+..+|.+.
T Consensus 101 aLr~lNl~~N~l~-~~p~-vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 101 ALRSLNLRFNPLN-AEPR-VIAPLIKLDMLDSPENARA 136 (177)
T ss_pred HhhhcccccCccc-cchH-HHHHHHhHHHhcCCCCccc
Confidence 9999999999987 5555 5555888888888888765
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.20 E-value=2.3e-07 Score=79.11 Aligned_cols=105 Identities=27% Similarity=0.369 Sum_probs=72.9
Q ss_pred CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcE
Q 045865 100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEH 179 (225)
Q Consensus 100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 179 (225)
..|...+++.|.+. .+.. .++-++.++.|+|+.|++... .++.. +++|++|++++|.+. .+|...-..++ |..
T Consensus 164 n~L~~a~fsyN~L~-~mD~-SLqll~ale~LnLshNk~~~v--~~Lr~-l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~ 236 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDE-SLQLLPALESLNLSHNKFTKV--DNLRR-LPKLKHLDLSYNCLR-HVPQLSMVGCK-LQL 236 (1096)
T ss_pred hhHhhhhcchhhHH-hHHH-HHHHHHHhhhhccchhhhhhh--HHHHh-cccccccccccchhc-cccccchhhhh-hee
Confidence 34555666666654 4444 677788899999999998643 47777 899999999999886 44542333455 888
Q ss_pred EEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCC
Q 045865 180 FDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGT 216 (225)
Q Consensus 180 l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~ 216 (225)
|.+++|.+ + . ...+.+ +.+|+-||+++|-|.+
T Consensus 237 L~lrnN~l--~-t-L~gie~-LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 237 LNLRNNAL--T-T-LRGIEN-LKSLYGLDLSYNLLSE 268 (1096)
T ss_pred eeecccHH--H-h-hhhHHh-hhhhhccchhHhhhhc
Confidence 88888854 1 2 334566 7778888888887754
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.20 E-value=1.3e-07 Score=64.63 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=35.4
Q ss_pred CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcE
Q 045865 100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEH 179 (225)
Q Consensus 100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 179 (225)
..|...++++|.+. .+|......++.++.+++..|.++ .+|..+.. |+.|+.++++.|.+. ..|. .+..+.++..
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa-m~aLr~lNl~~N~l~-~~p~-vi~~L~~l~~ 127 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAA-MPALRSLNLRFNPLN-AEPR-VIAPLIKLDM 127 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhh-hHHhhhcccccCccc-cchH-HHHHHHhHHH
Confidence 33444444444443 333322333334445555555544 23333444 555555555555544 2233 3333444555
Q ss_pred EEccCC
Q 045865 180 FDMRFA 185 (225)
Q Consensus 180 l~l~~n 185 (225)
|+...|
T Consensus 128 Lds~~n 133 (177)
T KOG4579|consen 128 LDSPEN 133 (177)
T ss_pred hcCCCC
Confidence 554444
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.15 E-value=1.2e-06 Score=63.70 Aligned_cols=41 Identities=29% Similarity=0.272 Sum_probs=17.8
Q ss_pred HhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCC
Q 045865 72 LSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRL 112 (225)
Q Consensus 72 ~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~ 112 (225)
|..++.|.+|.+++|.|+.+.|.--.-+++|..|.+.+|.+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 34444445555555544443333222334444444444444
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.12 E-value=3.4e-06 Score=46.42 Aligned_cols=37 Identities=27% Similarity=0.441 Sum_probs=22.8
Q ss_pred CCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCC
Q 045865 176 SLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGT 216 (225)
Q Consensus 176 ~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~ 216 (225)
+|++|++++|+| ..++..+++ +++|+.|++++|+|+.
T Consensus 2 ~L~~L~l~~N~i---~~l~~~l~~-l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQI---TDLPPELSN-LPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS----SSHGGHGTT-CTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCC---cccCchHhC-CCCCCEEEecCCCCCC
Confidence 566777777755 345555666 7777777777777763
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=2.7e-05 Score=42.75 Aligned_cols=36 Identities=36% Similarity=0.542 Sum_probs=16.1
Q ss_pred CCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCC
Q 045865 77 NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLE 113 (225)
Q Consensus 77 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~ 113 (225)
+|++|++++|.++. ++..+..+++|+.|++++|.+.
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34455555555443 2333445555555555555444
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.76 E-value=3.1e-05 Score=56.49 Aligned_cols=128 Identities=27% Similarity=0.268 Sum_probs=90.3
Q ss_pred ccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCce
Q 045865 50 LESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEY 129 (225)
Q Consensus 50 L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 129 (225)
=+++++.+..+.....- -........+||++|.+-. ...|..++.|.+|.+..|++. .+.+..-..+++|..
T Consensus 21 e~e~~LR~lkip~ienl-----g~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~ 92 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENL-----GATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKT 92 (233)
T ss_pred ccccccccccccchhhc-----cccccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccce
Confidence 35677777776542211 1234577888999998743 356678889999999999998 555424556678999
Q ss_pred eecCCCCCcHHH-HHHHHhhCCCCCEEeccccccccccc--cCCCCCCCCCcEEEccCCc
Q 045865 130 LTLESSSLHISL-LQSIASIFPSLKNLSMSFCEVNGVVR--GQGFPHFKSLEHFDMRFAR 186 (225)
Q Consensus 130 l~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~L~~l~l~~n~ 186 (225)
|.+.+|.+.... ..-+.. +|+|+.|.+-+|+++..-. .-.+..+++|+.||+..-.
T Consensus 93 L~LtnNsi~~l~dl~pLa~-~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 93 LILTNNSIQELGDLDPLAS-CPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred EEecCcchhhhhhcchhcc-CCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 999999886321 234555 8999999999998864311 1256688999999998864
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=2.8e-06 Score=64.87 Aligned_cols=83 Identities=27% Similarity=0.330 Sum_probs=47.1
Q ss_pred CCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHH-HHHHHhhCCCCC
Q 045865 75 LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISL-LQSIASIFPSLK 153 (225)
Q Consensus 75 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~L~ 153 (225)
+.+.++|++.+|.++++ .....++.|+.|.++-|++. .+. .+..+++|+.|+|..|.|.+.- ...+.+ +|+|+
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~--pl~rCtrLkElYLRkN~I~sldEL~YLkn-lpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLA--PLQRCTRLKELYLRKNCIESLDELEYLKN-LPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cch--hHHHHHHHHHHHHHhcccccHHHHHHHhc-Cchhh
Confidence 44556666666666542 33345666666666666665 333 4556666666666666665322 223344 66666
Q ss_pred EEeccccccc
Q 045865 154 NLSMSFCEVN 163 (225)
Q Consensus 154 ~L~l~~n~~~ 163 (225)
.|.+..|+-.
T Consensus 92 ~LWL~ENPCc 101 (388)
T KOG2123|consen 92 TLWLDENPCC 101 (388)
T ss_pred hHhhccCCcc
Confidence 6666666543
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.69 E-value=2.5e-05 Score=62.79 Aligned_cols=188 Identities=19% Similarity=0.163 Sum_probs=111.9
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHH-hcCCCCCEEECCCCC-CChhhHHh-h
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERL-SRLNNLKMLNLSGNS-FNNSILSS-L 96 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~-~~l~~L~~L~l~~~~-l~~~~~~~-l 96 (225)
+.+++|+++|++--.. .-.......+++++.|.+.++.. +.+.-+..+ ..++.|++|++..|. ++...... .
T Consensus 138 g~lk~LSlrG~r~v~~--sslrt~~~~CpnIehL~l~gc~~---iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGD--SSLRTFASNCPNIEHLALYGCKK---ITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred cccccccccccccCCc--chhhHHhhhCCchhhhhhhccee---ccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 5678888888764321 22333456788888888877752 222222233 468899999998854 55544443 3
Q ss_pred hcCCCCCEEEcCCCCC-CCccchhhhccCCCCceeecCCCC-CcHHHHHHHHhhCCCCCEEeccccc-cccccccCCCCC
Q 045865 97 THLSSLRSLNLLWNRL-EGSIDVKELHNFTNLEYLTLESSS-LHISLLQSIASIFPSLKNLSMSFCE-VNGVVRGQGFPH 173 (225)
Q Consensus 97 ~~l~~L~~L~l~~n~~-~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~ 173 (225)
..+++|.+++++++.- .+.--....+....++.+.+.+|. ............+.-+..+++..|. +++.....+-..
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 4688999999999863 221111133445556666665543 2112222222224556666655664 444333334556
Q ss_pred CCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCc
Q 045865 174 FKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYST 213 (225)
Q Consensus 174 ~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~ 213 (225)
+..|+.++.+++. ..++.+..++++++++|+.+-+.+++
T Consensus 293 c~~lq~l~~s~~t-~~~d~~l~aLg~~~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 293 CHALQVLCYSSCT-DITDEVLWALGQHCHNLQVLELSGCQ 331 (483)
T ss_pred hhHhhhhcccCCC-CCchHHHHHHhcCCCceEEEeccccc
Confidence 7788888888774 34556666777778888888888885
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.38 E-value=0.00012 Score=55.52 Aligned_cols=109 Identities=25% Similarity=0.315 Sum_probs=68.0
Q ss_pred cCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCC--CCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhc
Q 045865 45 TPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGN--SFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELH 122 (225)
Q Consensus 45 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~--~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 122 (225)
..+..|+.+++.+..++... .+..+++|++|.++.| ++....+.....+|+|++++++.|++...-......
T Consensus 40 d~~~~le~ls~~n~gltt~~------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred ccccchhhhhhhccceeecc------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence 44455666666666554321 3677889999999998 555434444445699999999999886321112455
Q ss_pred cCCCCceeecCCCCCcH--HHHHHHHhhCCCCCEEeccc
Q 045865 123 NFTNLEYLTLESSSLHI--SLLQSIASIFPSLKNLSMSF 159 (225)
Q Consensus 123 ~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~ 159 (225)
.+.+|..|++..|.... .....++..+++|+.|+-..
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 66778888888876542 12233333367787775443
No 62
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.31 E-value=1.3e-05 Score=67.09 Aligned_cols=197 Identities=21% Similarity=0.193 Sum_probs=129.6
Q ss_pred eEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcC-CCCCEEECCCCCCCh----hhHHhh
Q 045865 22 VIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRL-NNLKMLNLSGNSFNN----SILSSL 96 (225)
Q Consensus 22 v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~~----~~~~~l 96 (225)
+..+++.+|++..+..+.....+..+.+|..|++++|.+.........+.+... +.+++|.+..|.++. .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 566788888888877777888888889999999999988754444333444443 677778888887754 344555
Q ss_pred hcCCCCCEEEcCCCCCCCc---cchhhhc----cCCCCceeecCCCCCcHHHH----HHHHhhCCC-CCEEecccccccc
Q 045865 97 THLSSLRSLNLLWNRLEGS---IDVKELH----NFTNLEYLTLESSSLHISLL----QSIASIFPS-LKNLSMSFCEVNG 164 (225)
Q Consensus 97 ~~l~~L~~L~l~~n~~~~~---~~~~~~~----~l~~L~~l~l~~~~~~~~~~----~~~~~~~~~-L~~L~l~~n~~~~ 164 (225)
.....++.+++..|.+... .....+. ...+++++.+..+.++.... ..+.. .+. +..+++..|.+.+
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~-~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLAS-GESLLRELDLASNKLGD 247 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhc-cchhhHHHHHHhcCcch
Confidence 5667788888888877411 1111222 45678888898888764322 22233 344 6668888887653
Q ss_pred cccc---CCCCCC-CCCcEEEccCCccccc--hhHHHHHhhcCCCCcEEEccCCcCCCccch
Q 045865 165 VVRG---QGFPHF-KSLEHFDMRFARIALN--TSFLQIIGESMPSLKYLLLSYSTLGTNSSR 220 (225)
Q Consensus 165 ~~~~---~~~~~~-~~L~~l~l~~n~i~~~--~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~ 220 (225)
.... ..+... ..++.++++.|.|... ..+.+.+.. ++.++.+.+++|.+.....+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~-~~~l~~l~l~~n~l~~~~~~ 308 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVS-CRQLEELSLSNNPLTDYGVE 308 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhh-hHHHHHhhcccCccccHHHH
Confidence 3111 133444 5678889998865332 245566666 88889999999988765443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.30 E-value=0.00015 Score=54.92 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=27.2
Q ss_pred hccCCCCceeecCCC--CCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCC
Q 045865 121 LHNFTNLEYLTLESS--SLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFA 185 (225)
Q Consensus 121 ~~~l~~L~~l~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n 185 (225)
+..+++|+.|.++.| ++.+.+..-... +|+|+++++++|.|....-..-+..+.+|..|++..|
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 334445555555555 333222222222 4555555555555442111112334444555555554
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.29 E-value=0.00016 Score=49.53 Aligned_cols=63 Identities=24% Similarity=0.309 Sum_probs=23.5
Q ss_pred hhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcC
Q 045865 40 NASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLL 108 (225)
Q Consensus 40 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 108 (225)
...+|.++++|+.+.+.. .+...... .|..++.|+.+.+..+ +.......+..++.++.+.+.
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~----~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGEN----AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TT----TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChh----hccccccccccccccc-ccccceeeeeccccccccccc
Confidence 334555555666666553 23332222 3445555555555543 333233344444445555553
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.22 E-value=0.001 Score=54.47 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=29.2
Q ss_pred CCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCC
Q 045865 46 PFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWN 110 (225)
Q Consensus 46 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n 110 (225)
.+++++.|++++|.+.. .|. + .++|++|.+.+|.-...+|..+ ..+|+.|.+.+|
T Consensus 50 ~~~~l~~L~Is~c~L~s-LP~-----L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIES-LPV-----L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCcc-cCC-----C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 35667777777665554 221 1 2357777776643322233333 135666666666
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.18 E-value=0.00074 Score=56.82 Aligned_cols=116 Identities=29% Similarity=0.265 Sum_probs=64.2
Q ss_pred hcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCC-CC-Ch---hhHHhhhcCCCCCEEEcCCCC-CCCccc
Q 045865 44 FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGN-SF-NN---SILSSLTHLSSLRSLNLLWNR-LEGSID 117 (225)
Q Consensus 44 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~-~l-~~---~~~~~l~~l~~L~~L~l~~n~-~~~~~~ 117 (225)
...++.|+.+.+..+.-..... .......++.|+.|+++++ .. .. ........+.+|+.++++.+. +. ...
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is-d~~ 260 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT-DIG 260 (482)
T ss_pred HhhCchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC-chh
Confidence 3346777777776653222111 1113556778888887763 11 11 112233445777777777776 43 222
Q ss_pred hhhhc-cCCCCceeecCCCC-CcHHHHHHHHhhCCCCCEEecccccc
Q 045865 118 VKELH-NFTNLEYLTLESSS-LHISLLQSIASIFPSLKNLSMSFCEV 162 (225)
Q Consensus 118 ~~~~~-~l~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~ 162 (225)
...+. .+++|+.|.+..+. +++.....+...++.|++|+++++..
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 21222 35677777776666 56555555554477788888877754
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=6.2e-05 Score=57.70 Aligned_cols=84 Identities=32% Similarity=0.269 Sum_probs=50.9
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChh-hHHhhhc
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNS-ILSSLTH 98 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~l~~ 98 (225)
..|+.|+..|+++. ..+...+|+.|++|.|+-|.|....| +..|+.|++|.|..|.|... -...+.+
T Consensus 19 ~~vkKLNcwg~~L~------DIsic~kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN~I~sldEL~YLkn 86 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD------DISICEKMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKNCIESLDELEYLKN 86 (388)
T ss_pred HHhhhhcccCCCcc------HHHHHHhcccceeEEeeccccccchh------HHHHHHHHHHHHHhcccccHHHHHHHhc
Confidence 35666777777665 22345567777777777777765322 55666777777777766542 2345556
Q ss_pred CCCCCEEEcCCCCCCCc
Q 045865 99 LSSLRSLNLLWNRLEGS 115 (225)
Q Consensus 99 l~~L~~L~l~~n~~~~~ 115 (225)
+++|+.|-+..|...+.
T Consensus 87 lpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGE 103 (388)
T ss_pred CchhhhHhhccCCcccc
Confidence 66666666666665533
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.04 E-value=0.001 Score=56.02 Aligned_cols=140 Identities=24% Similarity=0.178 Sum_probs=91.4
Q ss_pred HhcCCCCCEEECCCCCC-Chh-hHHhhhcCCCCCEEEcCCC-CCCCccc---hhhhccCCCCceeecCCCC-CcHHHHHH
Q 045865 72 LSRLNNLKMLNLSGNSF-NNS-ILSSLTHLSSLRSLNLLWN-RLEGSID---VKELHNFTNLEYLTLESSS-LHISLLQS 144 (225)
Q Consensus 72 ~~~l~~L~~L~l~~~~l-~~~-~~~~l~~l~~L~~L~l~~n-~~~~~~~---~~~~~~l~~L~~l~l~~~~-~~~~~~~~ 144 (225)
...++.|+.+.+.++.- +.. .......++.|+.|++..+ ......+ ......+.+|+.+++..+. +++.....
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 34578999999888743 321 3345557889999999873 2111111 1134455788899998887 77666677
Q ss_pred HHhhCCCCCEEeccccc-cccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCC
Q 045865 145 IASIFPSLKNLSMSFCE-VNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYS 212 (225)
Q Consensus 145 ~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n 212 (225)
+...+++|+.|.+..+. +++.........++.|+.++++.+..-....+...... +++++.+.+...
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~-c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN-CPNLRELKLLSL 331 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh-Ccchhhhhhhhc
Confidence 76658899999987776 55443333555788899999998853223334444444 888777665544
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.76 E-value=0.002 Score=43.99 Aligned_cols=102 Identities=14% Similarity=0.285 Sum_probs=59.6
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~ 98 (225)
...++.+.+.. .+. .+....|..++.++.+.+..+ +...... .|..++.++.+.+.. .+.......+..
T Consensus 11 ~~~l~~i~~~~-~~~----~I~~~~F~~~~~l~~i~~~~~-~~~i~~~----~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 11 CSNLESITFPN-TIK----KIGENAFSNCTSLKSINFPNN-LTSIGDN----AFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp -TT--EEEETS-T------EE-TTTTTT-TT-SEEEESST-TSCE-TT----TTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred CCCCCEEEECC-Cee----EeChhhccccccccccccccc-cccccee----eeecccccccccccc-cccccccccccc
Confidence 34677788774 344 678888999999999999875 5553333 578888999999976 554444556777
Q ss_pred CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCC
Q 045865 99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLES 134 (225)
Q Consensus 99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~ 134 (225)
+.+++.+.+..+ +. .++...+... .++.+.+..
T Consensus 80 ~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc-cc-EEchhhhcCC-CceEEEECC
Confidence 888999998765 43 4554456665 777777765
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.72 E-value=0.0053 Score=50.41 Aligned_cols=126 Identities=14% Similarity=0.135 Sum_probs=74.3
Q ss_pred chhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC-CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCC-CCcHHH
Q 045865 64 VENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL-SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESS-SLHISL 141 (225)
Q Consensus 64 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~-~~~~~~ 141 (225)
...+++.++..+.+++.|++++|.+.. +| .+ .+|+.|.+.++.-...+|. .+ ..+|+.|.+++| .+. .+
T Consensus 40 ~r~~a~~r~~~~~~l~~L~Is~c~L~s-LP----~LP~sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~Cs~L~-sL 110 (426)
T PRK15386 40 IRSEITPQIEEARASGRLYIKDCDIES-LP----VLPNELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHCPEIS-GL 110 (426)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCCCcc-cC----CCCCCCcEEEccCCCCcccCCc-hh--hhhhhheEccCccccc-cc
Confidence 334445567778999999999998766 34 23 4699999988654435553 22 357899999987 332 22
Q ss_pred HHHHHhhCCCCCEEeccccccc--cccccCCCCC-----------------C-CCCcEEEccCCccccchhHHHHHhhcC
Q 045865 142 LQSIASIFPSLKNLSMSFCEVN--GVVRGQGFPH-----------------F-KSLEHFDMRFARIALNTSFLQIIGESM 201 (225)
Q Consensus 142 ~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~~-----------------~-~~L~~l~l~~n~i~~~~~~~~~l~~~~ 201 (225)
.+.|+.|.+..+... ...|. .+.. + .+|++|++++|.. . ..|..+ -
T Consensus 111 -------P~sLe~L~L~~n~~~~L~~LPs-sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~--i-~LP~~L---P 176 (426)
T PRK15386 111 -------PESVRSLEIKGSATDSIKNVPN-GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN--I-ILPEKL---P 176 (426)
T ss_pred -------ccccceEEeCCCCCcccccCcc-hHhheeccccccccccccccccCCcccEEEecCCCc--c-cCcccc---c
Confidence 234666666554321 12222 1111 1 3677777777632 1 223333 2
Q ss_pred CCCcEEEccCC
Q 045865 202 PSLKYLLLSYS 212 (225)
Q Consensus 202 ~~L~~L~l~~n 212 (225)
.+|+.|+++.+
T Consensus 177 ~SLk~L~ls~n 187 (426)
T PRK15386 177 ESLQSITLHIE 187 (426)
T ss_pred ccCcEEEeccc
Confidence 37778877765
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.66 E-value=0.0002 Score=60.16 Aligned_cols=194 Identities=20% Similarity=0.130 Sum_probs=128.2
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCC-CCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCCh----hhH
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPF-QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNN----SIL 93 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~----~~~ 93 (225)
...+.+|++++|.++..+.......+... +.+++|.+..|.+.........+.+....+++.+++..|.+.. ..+
T Consensus 114 ~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~ 193 (478)
T KOG4308|consen 114 LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLS 193 (478)
T ss_pred cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHh
Confidence 45778899999998865445555555544 6688899999998876666666677789999999999998732 223
Q ss_pred Hhhh----cCCCCCEEEcCCCCCCCccch----hhhccCCC-CceeecCCCCCcHHHHHHHHhh---C-CCCCEEecccc
Q 045865 94 SSLT----HLSSLRSLNLLWNRLEGSIDV----KELHNFTN-LEYLTLESSSLHISLLQSIASI---F-PSLKNLSMSFC 160 (225)
Q Consensus 94 ~~l~----~l~~L~~L~l~~n~~~~~~~~----~~~~~l~~-L~~l~l~~~~~~~~~~~~~~~~---~-~~L~~L~l~~n 160 (225)
..+. ...++++|.+.++.+... .. ..+..... +..+++..|.+.+.....+... + +.++.++++.|
T Consensus 194 ~~l~~~~~~~~~le~L~L~~~~~t~~-~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n 272 (478)
T KOG4308|consen 194 QALESAASPLSSLETLKLSRCGVTSS-SCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRN 272 (478)
T ss_pred hhhhhhhcccccHHHHhhhhcCcChH-HHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcC
Confidence 3333 467899999999987622 11 13444455 6669999998875533333222 3 46689999999
Q ss_pred cccccccc---CCCCCCCCCcEEEccCCccccch--hHHHHHhhcCCCCcEEEccCCcC
Q 045865 161 EVNGVVRG---QGFPHFKSLEHFDMRFARIALNT--SFLQIIGESMPSLKYLLLSYSTL 214 (225)
Q Consensus 161 ~~~~~~~~---~~~~~~~~L~~l~l~~n~i~~~~--~~~~~l~~~~~~L~~L~l~~n~l 214 (225)
.++..... ..+..++.++.+.++.|.+.... .+.+.+.. ...+..+.+.++..
T Consensus 273 si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~-~~~~~~~~l~~~~~ 330 (478)
T KOG4308|consen 273 SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALER-KTPLLHLVLGGTGK 330 (478)
T ss_pred CccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhh-cccchhhhccccCc
Confidence 98754332 25667789999999999653222 23344444 44455555554433
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.0031 Score=46.28 Aligned_cols=82 Identities=20% Similarity=0.195 Sum_probs=44.4
Q ss_pred CCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhc-cCCCCceeecCCCC-CcHHHHHHHHhhCCCCCE
Q 045865 77 NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELH-NFTNLEYLTLESSS-LHISLLQSIASIFPSLKN 154 (225)
Q Consensus 77 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~ 154 (225)
.++.+|-+++.|.......+..++.++.|.+.+++..+....+.+. ..++|+.|++++|. |++.....+.+ +++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhHH
Confidence 4455666666665555556666666666666666544332222222 23466666666543 55444555555 666666
Q ss_pred Eeccc
Q 045865 155 LSMSF 159 (225)
Q Consensus 155 L~l~~ 159 (225)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 65544
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.0034 Score=46.09 Aligned_cols=82 Identities=20% Similarity=0.239 Sum_probs=47.9
Q ss_pred CCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccc-cccccccCCCC-CCCCCcEEEccCCccccchhHHHHHhhcCCC
Q 045865 126 NLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCE-VNGVVRGQGFP-HFKSLEHFDMRFARIALNTSFLQIIGESMPS 203 (225)
Q Consensus 126 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~-~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~ 203 (225)
.++.++.++..|..+....+.. ++.++.|.+.+|. +.+.... -++ -.++|+.|++++|. .+++.-...+.+ +++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~-~l~~~~~~L~~L~lsgC~-rIT~~GL~~L~~-lkn 177 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLE-RLGGLAPSLQDLDLSGCP-RITDGGLACLLK-LKN 177 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhc-cchhhhheeccccchhhHHHH-HhcccccchheeeccCCC-eechhHHHHHHH-hhh
Confidence 4666777777766666666666 6677777666664 2222111 222 34567777777664 344444555666 777
Q ss_pred CcEEEccC
Q 045865 204 LKYLLLSY 211 (225)
Q Consensus 204 L~~L~l~~ 211 (225)
|+.|.+.+
T Consensus 178 Lr~L~l~~ 185 (221)
T KOG3864|consen 178 LRRLHLYD 185 (221)
T ss_pred hHHHHhcC
Confidence 77666654
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.91 E-value=0.004 Score=28.46 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=15.2
Q ss_pred CCcEEEccCCcCCCccchhhc
Q 045865 203 SLKYLLLSYSTLGTNSSRILH 223 (225)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~ 223 (225)
+|+.|++++|+|+ .+|..|.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 4788888888888 6666664
No 75
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.89 E-value=0.028 Score=45.86 Aligned_cols=140 Identities=21% Similarity=0.219 Sum_probs=83.8
Q ss_pred hcCCCCCEEECCCCC-CChhhHHhhh-cCCCCCEEEcCCCCCCCccchh-hhccCCCCceeecCCCCCc-HHHHHHHHhh
Q 045865 73 SRLNNLKMLNLSGNS-FNNSILSSLT-HLSSLRSLNLLWNRLEGSIDVK-ELHNFTNLEYLTLESSSLH-ISLLQSIASI 148 (225)
Q Consensus 73 ~~l~~L~~L~l~~~~-l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~l~l~~~~~~-~~~~~~~~~~ 148 (225)
..+..|+.|+.+++. +++.....+. +.++|+.+.+..+...+..... .-.+...|+.+++.++... +.....+..+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 456777777776653 3443333343 4678888888887643232211 2234567888888776532 2223334444
Q ss_pred CCCCCEEeccccc-cccccc---cCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcC
Q 045865 149 FPSLKNLSMSFCE-VNGVVR---GQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTL 214 (225)
Q Consensus 149 ~~~L~~L~l~~n~-~~~~~~---~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l 214 (225)
++.|+.+.++.+. +++..- ...-.+...|+.+-+++++ ..++.....+.. +++|+++++.+++-
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p-~i~d~~Le~l~~-c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP-LITDATLEHLSI-CRNLERIELIDCQD 438 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC-CchHHHHHHHhh-Ccccceeeeechhh
Confidence 7888888888775 332211 1122345677888888886 345566666777 88888888877753
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.60 E-value=0.0023 Score=29.96 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=9.8
Q ss_pred CCCcEEEccCCcCCCccchhh
Q 045865 202 PSLKYLLLSYSTLGTNSSRIL 222 (225)
Q Consensus 202 ~~L~~L~l~~n~l~~~~~~~~ 222 (225)
++|+.|+|++|.|++..++.+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 445555555555555544444
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.91 E-value=0.021 Score=24.26 Aligned_cols=14 Identities=43% Similarity=0.517 Sum_probs=7.7
Q ss_pred CCCcEEEccCCcCC
Q 045865 202 PSLKYLLLSYSTLG 215 (225)
Q Consensus 202 ~~L~~L~l~~n~l~ 215 (225)
++|+.|+|++|+|+
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 35777777777776
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.71 E-value=0.034 Score=26.38 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=17.5
Q ss_pred CCCCcEEEccCCcCCCccchhhc
Q 045865 201 MPSLKYLLLSYSTLGTNSSRILH 223 (225)
Q Consensus 201 ~~~L~~L~l~~n~l~~~~~~~~~ 223 (225)
+++|+.|++++|+|+..++..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 45788889999988877666654
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.71 E-value=0.034 Score=26.38 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=17.5
Q ss_pred CCCCcEEEccCCcCCCccchhhc
Q 045865 201 MPSLKYLLLSYSTLGTNSSRILH 223 (225)
Q Consensus 201 ~~~L~~L~l~~n~l~~~~~~~~~ 223 (225)
+++|+.|++++|+|+..++..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 45788889999988877666654
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=92.55 E-value=0.053 Score=26.35 Aligned_cols=19 Identities=42% Similarity=0.508 Sum_probs=9.0
Q ss_pred CCcEEEccCCcCCCccchh
Q 045865 203 SLKYLLLSYSTLGTNSSRI 221 (225)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~ 221 (225)
+|+.|+|++|.|.......
T Consensus 3 ~L~~LdL~~N~i~~~G~~~ 21 (28)
T smart00368 3 SLRELDLSNNKLGDEGARA 21 (28)
T ss_pred ccCEEECCCCCCCHHHHHH
Confidence 4455555555554444333
No 81
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=87.93 E-value=0.32 Score=26.18 Aligned_cols=12 Identities=42% Similarity=1.207 Sum_probs=9.6
Q ss_pred CcccCCCceeec
Q 045865 5 TDCCQWERVECS 16 (225)
Q Consensus 5 ~~~c~~~~~~~~ 16 (225)
+++|+|.||.|+
T Consensus 32 ~~~C~W~GV~Cd 43 (43)
T PF08263_consen 32 SDPCSWSGVTCD 43 (43)
T ss_dssp S-CCCSTTEEE-
T ss_pred CCCeeeccEEeC
Confidence 799999999995
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.72 E-value=0.5 Score=22.29 Aligned_cols=11 Identities=18% Similarity=0.295 Sum_probs=6.2
Q ss_pred CCCcEEEccCC
Q 045865 175 KSLEHFDMRFA 185 (225)
Q Consensus 175 ~~L~~l~l~~n 185 (225)
++|+.|+++.|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555555555
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.42 E-value=0.59 Score=22.22 Aligned_cols=18 Identities=39% Similarity=0.396 Sum_probs=12.9
Q ss_pred CCCcEEEccCCcCCCccch
Q 045865 202 PSLKYLLLSYSTLGTNSSR 220 (225)
Q Consensus 202 ~~L~~L~l~~n~l~~~~~~ 220 (225)
++|+.|++++|+|+ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35778888888887 5554
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=84.03 E-value=1.5 Score=37.45 Aligned_cols=91 Identities=22% Similarity=0.291 Sum_probs=51.6
Q ss_pred cCCCCceeecCCCCCcHHH-HHHHHhhCCCCCEEecccc--ccccccccCCCCCCCCCcEEEccCCccccc----hhHHH
Q 045865 123 NFTNLEYLTLESSSLHISL-LQSIASIFPSLKNLSMSFC--EVNGVVRGQGFPHFKSLEHFDMRFARIALN----TSFLQ 195 (225)
Q Consensus 123 ~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~n--~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~----~~~~~ 195 (225)
+.+.+..+++++|++.... ...+....|+|..|+|++| .+........++.+ .|+.|-+.+|++..+ .+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCccccchhhhHHHHH
Confidence 4567778888888865221 1233333789999999998 33211111123333 488899999976332 23334
Q ss_pred HHhhcCCCCcEEEccCCcCCC
Q 045865 196 IIGESMPSLKYLLLSYSTLGT 216 (225)
Q Consensus 196 ~l~~~~~~L~~L~l~~n~l~~ 216 (225)
++....|+|. .|.|..+..
T Consensus 295 ~i~~~FPKL~--~LDG~ev~~ 313 (585)
T KOG3763|consen 295 AIRELFPKLL--RLDGVEVQP 313 (585)
T ss_pred HHHHhcchhe--eecCcccCc
Confidence 4444477664 444555543
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.62 E-value=0.034 Score=42.06 Aligned_cols=81 Identities=19% Similarity=0.083 Sum_probs=38.0
Q ss_pred ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865 21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 100 (225)
Q Consensus 21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~ 100 (225)
+++.||++.+++- -...-|+.++.+..|+++.|.+.. .|. .++.+..++.+++..|..+. .|.++...+
T Consensus 43 r~tvld~~s~r~v-----n~~~n~s~~t~~~rl~~sknq~~~-~~~----d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~ 111 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-----NLGKNFSILTRLVRLDLSKNQIKF-LPK----DAKQQRETVNAASHKNNHSQ-QPKSQKKEP 111 (326)
T ss_pred eeeeehhhhhHHH-----hhccchHHHHHHHHHhccHhhHhh-Chh----hHHHHHHHHHHHhhccchhh-CCccccccC
Confidence 4555555555542 112223334445555555555443 222 34444445555555554443 444555555
Q ss_pred CCCEEEcCCCCC
Q 045865 101 SLRSLNLLWNRL 112 (225)
Q Consensus 101 ~L~~L~l~~n~~ 112 (225)
.+++++.-.+.+
T Consensus 112 ~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 112 HPKKNEQKKTEF 123 (326)
T ss_pred CcchhhhccCcc
Confidence 555555555544
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.34 E-value=0.053 Score=41.06 Aligned_cols=94 Identities=12% Similarity=0.062 Sum_probs=63.7
Q ss_pred hcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCC
Q 045865 97 THLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKS 176 (225)
Q Consensus 97 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 176 (225)
........||++.|.+. .+.. .++.++.+..++++.|.+. ..|....+ ...+..+.+..|+.. ..|. .++..+.
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~-n~s~~t~~~rl~~sknq~~-~~~~d~~q-~~e~~~~~~~~n~~~-~~p~-s~~k~~~ 112 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGK-NFSILTRLVRLDLSKNQIK-FLPKDAKQ-QRETVNAASHKNNHS-QQPK-SQKKEPH 112 (326)
T ss_pred hccceeeeehhhhhHHH-hhcc-chHHHHHHHHHhccHhhHh-hChhhHHH-HHHHHHHHhhccchh-hCCc-cccccCC
Confidence 34556677787777765 4443 6677778888888888765 44555555 566677777777765 6676 8888888
Q ss_pred CcEEEccCCccccchhHHHHHh
Q 045865 177 LEHFDMRFARIALNTSFLQIIG 198 (225)
Q Consensus 177 L~~l~l~~n~i~~~~~~~~~l~ 198 (225)
++++++..+ .+...+....+
T Consensus 113 ~k~~e~k~~--~~~~~~~~~v~ 132 (326)
T KOG0473|consen 113 PKKNEQKKT--EFFRKLFGFVW 132 (326)
T ss_pred cchhhhccC--cchHHHHhHhh
Confidence 999998888 44444444333
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=79.39 E-value=3.6 Score=35.30 Aligned_cols=83 Identities=24% Similarity=0.345 Sum_probs=47.6
Q ss_pred hcCCCCCEEECCCCCCChh--hHHhhhcCCCCCEEEcCCC--CCCCccchhhhccCCCCceeecCCCCCcHH------HH
Q 045865 73 SRLNNLKMLNLSGNSFNNS--ILSSLTHLSSLRSLNLLWN--RLEGSIDVKELHNFTNLEYLTLESSSLHIS------LL 142 (225)
Q Consensus 73 ~~l~~L~~L~l~~~~l~~~--~~~~l~~l~~L~~L~l~~n--~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~------~~ 142 (225)
.+.+.+..+.|++|.+... ........|.|..|+|++| .+...... .......|++|.+.+|.+... ..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el-~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESEL-DKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhh-hhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 3567777888888877431 2222334678888888888 33322111 112334578888888876532 22
Q ss_pred HHHHhhCCCCCEEe
Q 045865 143 QSIASIFPSLKNLS 156 (225)
Q Consensus 143 ~~~~~~~~~L~~L~ 156 (225)
..+...+|+|..|+
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 34444467776553
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.14 E-value=2.1 Score=20.36 Aligned_cols=14 Identities=29% Similarity=0.256 Sum_probs=10.3
Q ss_pred CCCcEEEccCCcCC
Q 045865 202 PSLKYLLLSYSTLG 215 (225)
Q Consensus 202 ~~L~~L~l~~n~l~ 215 (225)
.+|+.|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46777888888775
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=33.32 E-value=27 Score=36.29 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=27.8
Q ss_pred eccccccccchhHHhhhhhcCCCCccEEEccCCccc
Q 045865 26 DLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIA 61 (225)
Q Consensus 26 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~ 61 (225)
||++|++. .++...|..+++|+.|+|++|++.
T Consensus 1 DLSnN~Ls----tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS----TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC----ccChHHhccCCCceEEEeeCCccc
Confidence 57889988 788889999999999999998764
No 90
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=21.41 E-value=57 Score=15.48 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=10.3
Q ss_pred HHhcCCCCCEEECCC
Q 045865 71 RLSRLNNLKMLNLSG 85 (225)
Q Consensus 71 ~~~~l~~L~~L~l~~ 85 (225)
.+..+|+|+.||...
T Consensus 8 Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 8 VIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHCCccceecccc
Confidence 466778888887543
Done!