Query 045865
Match_columns 225
No_of_seqs 134 out of 2125
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 10:43:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045865.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045865hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 3.8E-28 1.3E-32 192.0 7.9 208 4-223 30-265 (313)
2 4fcg_A Uncharacterized protein 99.9 1.9E-25 6.6E-30 177.5 8.5 205 2-224 55-299 (328)
3 2o6q_A Variable lymphocyte rec 99.9 4.5E-25 1.5E-29 170.8 10.3 201 4-218 1-221 (270)
4 4eco_A Uncharacterized protein 99.9 4.2E-25 1.4E-29 189.9 8.8 196 3-215 62-366 (636)
5 1ozn_A Reticulon 4 receptor; N 99.9 5.1E-24 1.7E-28 166.1 11.5 190 19-222 31-221 (285)
6 3rgz_A Protein brassinosteroid 99.9 5E-24 1.7E-28 186.8 8.9 189 20-221 466-723 (768)
7 4ecn_A Leucine-rich repeat pro 99.9 1.2E-23 4E-28 185.3 11.1 194 11-222 315-614 (876)
8 3m19_A Variable lymphocyte rec 99.9 1.2E-23 4.1E-28 161.1 9.2 192 6-217 3-194 (251)
9 1ogq_A PGIP-2, polygalacturona 99.9 3.2E-24 1.1E-28 169.5 5.7 186 20-221 101-287 (313)
10 1ozn_A Reticulon 4 receptor; N 99.9 5.6E-23 1.9E-27 160.2 12.2 187 19-219 55-242 (285)
11 3rgz_A Protein brassinosteroid 99.9 2E-23 7E-28 182.9 9.8 135 20-164 418-552 (768)
12 2z66_A Variable lymphocyte rec 99.9 2E-23 6.8E-28 164.3 8.5 201 8-222 7-243 (306)
13 2o6q_A Variable lymphocyte rec 99.9 1.4E-22 4.6E-27 156.9 11.3 183 23-222 19-201 (270)
14 2z80_A TOLL-like receptor 2, v 99.9 1E-22 3.4E-27 163.4 10.1 202 4-220 26-240 (353)
15 3rfs_A Internalin B, repeat mo 99.9 5.6E-22 1.9E-26 153.6 12.0 183 19-219 40-222 (272)
16 3zyj_A Leucine-rich repeat-con 99.9 5.2E-22 1.8E-26 163.7 11.3 188 20-223 64-276 (440)
17 3rfs_A Internalin B, repeat mo 99.9 3.1E-22 1.1E-26 155.0 8.9 182 19-223 62-243 (272)
18 3zyi_A Leucine-rich repeat-con 99.9 4.6E-22 1.6E-26 164.6 10.4 187 20-222 75-286 (452)
19 3v47_A TOLL-like receptor 5B a 99.9 5.7E-22 2E-26 163.9 10.5 141 20-168 30-172 (455)
20 3zyi_A Leucine-rich repeat-con 99.9 7.5E-22 2.6E-26 163.3 11.0 154 21-187 55-208 (452)
21 2z62_A TOLL-like receptor 4, v 99.9 1.9E-22 6.4E-27 156.5 6.5 187 20-219 28-241 (276)
22 3zyj_A Leucine-rich repeat-con 99.9 1.2E-21 4.1E-26 161.5 10.2 183 21-221 44-226 (440)
23 1p9a_G Platelet glycoprotein I 99.9 1.4E-21 4.6E-26 152.8 9.6 180 19-216 30-209 (290)
24 3v47_A TOLL-like receptor 5B a 99.9 4.3E-21 1.5E-25 158.6 12.5 87 21-113 80-167 (455)
25 2z81_A CD282 antigen, TOLL-lik 99.9 2.2E-21 7.7E-26 163.9 10.5 196 7-217 3-211 (549)
26 3o6n_A APL1; leucine-rich repe 99.8 3.8E-21 1.3E-25 156.1 11.2 135 20-164 45-179 (390)
27 2z66_A Variable lymphocyte rec 99.8 4.7E-22 1.6E-26 156.4 5.5 185 20-218 78-264 (306)
28 3m19_A Variable lymphocyte rec 99.8 7.6E-21 2.6E-25 145.5 11.5 190 19-221 34-227 (251)
29 1wwl_A Monocyte differentiatio 99.8 3.4E-21 1.2E-25 152.0 9.3 184 19-217 94-289 (312)
30 2z62_A TOLL-like receptor 4, v 99.8 4.6E-21 1.6E-25 148.6 9.6 161 19-189 51-238 (276)
31 2id5_A Lingo-1, leucine rich r 99.8 1.2E-21 4.2E-26 162.9 6.5 189 20-222 32-244 (477)
32 2ft3_A Biglycan; proteoglycan, 99.8 4.6E-21 1.6E-25 152.5 9.2 202 8-223 33-285 (332)
33 2id5_A Lingo-1, leucine rich r 99.8 8E-21 2.7E-25 158.0 10.9 189 21-223 81-269 (477)
34 1xku_A Decorin; proteoglycan, 99.8 9.1E-21 3.1E-25 150.6 10.3 190 19-223 75-284 (330)
35 2z80_A TOLL-like receptor 2, v 99.8 1.7E-21 5.6E-26 156.3 5.9 137 19-164 75-236 (353)
36 3t6q_A CD180 antigen; protein- 99.8 4.6E-21 1.6E-25 163.8 8.9 67 149-220 475-541 (606)
37 3o6n_A APL1; leucine-rich repe 99.8 1.6E-20 5.5E-25 152.4 11.6 62 149-215 247-308 (390)
38 1xku_A Decorin; proteoglycan, 99.8 2.2E-20 7.6E-25 148.4 12.0 197 8-222 31-259 (330)
39 3t6q_A CD180 antigen; protein- 99.8 1.4E-20 4.8E-25 160.8 11.2 186 21-220 255-443 (606)
40 2ca6_A RAN GTPase-activating p 99.8 7.3E-20 2.5E-24 148.4 14.6 196 19-219 93-320 (386)
41 4fcg_A Uncharacterized protein 99.8 2.3E-21 7.7E-26 154.1 5.3 180 20-216 127-315 (328)
42 2xwt_C Thyrotropin receptor; s 99.8 1.4E-21 4.9E-26 148.4 3.8 186 19-222 30-225 (239)
43 4glp_A Monocyte differentiatio 99.8 1.2E-20 4.2E-25 148.7 9.0 185 21-217 92-287 (310)
44 3oja_B Anopheles plasmodium-re 99.8 3E-20 1E-24 158.7 11.9 108 20-136 75-182 (597)
45 1p9a_G Platelet glycoprotein I 99.8 1.8E-20 6.1E-25 146.5 9.6 181 18-219 8-189 (290)
46 3oja_B Anopheles plasmodium-re 99.8 1.7E-20 5.8E-25 160.2 10.3 134 20-163 51-184 (597)
47 2o6s_A Variable lymphocyte rec 99.8 1.2E-20 4E-25 140.4 7.0 160 47-223 27-186 (208)
48 2o6s_A Variable lymphocyte rec 99.8 4.1E-21 1.4E-25 142.9 4.5 191 7-222 6-205 (208)
49 3vq2_A TLR4, TOLL-like recepto 99.8 8.7E-21 3E-25 162.1 7.1 163 44-216 395-559 (606)
50 2ast_B S-phase kinase-associat 99.8 3E-19 1E-23 142.0 15.2 185 20-217 93-286 (336)
51 3goz_A Leucine-rich repeat-con 99.8 2.6E-19 8.9E-24 144.0 14.5 202 19-222 21-245 (362)
52 3vq2_A TLR4, TOLL-like recepto 99.8 8.9E-21 3E-25 162.0 6.0 189 20-222 350-540 (606)
53 1wwl_A Monocyte differentiatio 99.8 1E-20 3.4E-25 149.3 5.8 181 18-217 119-311 (312)
54 1h6u_A Internalin H; cell adhe 99.8 2.6E-19 8.9E-24 141.0 13.7 169 20-216 63-231 (308)
55 2ca6_A RAN GTPase-activating p 99.8 3.2E-19 1.1E-23 144.6 14.4 196 19-217 31-259 (386)
56 3j0a_A TOLL-like receptor 5; m 99.8 9.2E-21 3.1E-25 167.7 4.8 200 9-223 15-225 (844)
57 2ast_B S-phase kinase-associat 99.8 5.3E-20 1.8E-24 146.3 8.7 161 44-213 89-258 (336)
58 1h6u_A Internalin H; cell adhe 99.8 1.5E-18 5.3E-23 136.6 16.5 173 19-219 40-212 (308)
59 4eco_A Uncharacterized protein 99.8 1E-20 3.4E-25 162.7 4.1 192 19-223 205-423 (636)
60 1ziw_A TOLL-like receptor 3; i 99.8 6.3E-20 2.2E-24 158.8 8.9 157 19-186 24-182 (680)
61 1h6t_A Internalin B; cell adhe 99.8 3.4E-19 1.2E-23 139.3 12.1 174 19-220 45-218 (291)
62 3oja_A Leucine-rich immune mol 99.8 3.4E-20 1.2E-24 154.7 6.8 183 20-221 34-232 (487)
63 1ziw_A TOLL-like receptor 3; i 99.8 2.1E-19 7.1E-24 155.5 11.1 143 73-222 451-604 (680)
64 3o53_A Protein LRIM1, AGAP0063 99.8 9.6E-21 3.3E-25 149.8 2.5 183 20-221 34-232 (317)
65 2z63_A TOLL-like receptor 4, v 99.8 4.3E-20 1.5E-24 156.5 6.3 189 19-220 346-536 (570)
66 4fmz_A Internalin; leucine ric 99.8 4.6E-18 1.6E-22 135.8 16.8 174 20-219 155-328 (347)
67 2z7x_B TOLL-like receptor 1, v 99.8 2E-18 7E-23 144.9 15.1 71 149-221 323-393 (520)
68 4glp_A Monocyte differentiatio 99.8 5E-20 1.7E-24 145.2 4.9 184 19-217 116-309 (310)
69 2z7x_B TOLL-like receptor 1, v 99.8 5.8E-19 2E-23 148.2 11.4 162 45-219 321-485 (520)
70 4fmz_A Internalin; leucine ric 99.8 1.4E-18 4.7E-23 138.8 12.8 172 18-215 175-346 (347)
71 2z63_A TOLL-like receptor 4, v 99.8 1.2E-19 4E-24 153.9 6.9 169 45-223 344-515 (570)
72 4ecn_A Leucine-rich repeat pro 99.8 1.1E-19 3.8E-24 160.1 6.9 188 19-220 447-662 (876)
73 1z7x_W Ribonuclease inhibitor; 99.8 9.7E-19 3.3E-23 144.7 11.2 198 21-221 200-417 (461)
74 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 8.5E-19 2.9E-23 148.7 10.5 161 45-219 350-514 (562)
75 1m9s_A Internalin B; cell inva 99.8 1.5E-18 5E-23 148.0 11.9 174 19-220 42-215 (605)
76 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.9E-18 9.8E-23 145.4 13.7 105 20-136 52-157 (562)
77 4ezg_A Putative uncharacterize 99.8 1.4E-18 4.7E-23 128.2 10.2 154 45-216 41-195 (197)
78 3o53_A Protein LRIM1, AGAP0063 99.8 8.3E-19 2.8E-23 138.6 9.5 183 21-220 11-209 (317)
79 2z81_A CD282 antigen, TOLL-lik 99.8 1.5E-18 5.1E-23 146.6 11.6 185 20-219 310-514 (549)
80 3j0a_A TOLL-like receptor 5; m 99.8 3.4E-19 1.2E-23 157.7 7.5 68 151-222 267-334 (844)
81 1z7x_W Ribonuclease inhibitor; 99.8 4.7E-18 1.6E-22 140.6 13.7 198 21-221 86-303 (461)
82 4g8a_A TOLL-like receptor 4; l 99.8 2.2E-19 7.5E-24 153.7 5.5 139 19-167 51-190 (635)
83 1o6v_A Internalin A; bacterial 99.8 1.7E-17 5.9E-22 137.6 15.8 106 97-216 284-389 (466)
84 2v9t_B SLIT homolog 2 protein 99.8 1.7E-18 5.9E-23 129.9 8.8 153 23-189 14-166 (220)
85 3oja_A Leucine-rich immune mol 99.8 4E-19 1.4E-23 148.2 5.7 188 19-222 57-258 (487)
86 1o6v_A Internalin A; bacterial 99.8 1.2E-17 4.3E-22 138.5 14.4 174 18-219 197-370 (466)
87 3e6j_A Variable lymphocyte rec 99.8 2.7E-18 9.2E-23 129.6 9.4 158 4-188 15-172 (229)
88 2v70_A SLIT-2, SLIT homolog 2 99.7 3.4E-18 1.2E-22 128.2 9.1 154 23-189 14-167 (220)
89 3goz_A Leucine-rich repeat-con 99.7 5.2E-18 1.8E-22 136.4 10.8 191 25-220 3-214 (362)
90 2v70_A SLIT-2, SLIT homolog 2 99.7 3.8E-18 1.3E-22 128.0 9.3 157 50-219 13-170 (220)
91 2ft3_A Biglycan; proteoglycan, 99.7 1E-18 3.6E-23 138.8 6.4 181 21-222 34-260 (332)
92 2xot_A Amphoterin-induced prot 99.7 1.5E-18 5E-23 139.6 7.3 178 23-217 21-204 (361)
93 2xwt_C Thyrotropin receptor; s 99.7 5.8E-19 2E-23 134.0 3.2 175 19-213 54-237 (239)
94 3e6j_A Variable lymphocyte rec 99.7 1.3E-17 4.5E-22 125.8 10.5 156 50-219 21-176 (229)
95 1xeu_A Internalin C; cellular 99.7 1.8E-18 6.1E-23 133.2 5.8 170 21-219 20-189 (263)
96 2v9t_B SLIT homolog 2 protein 99.7 9.2E-18 3.1E-22 125.9 8.1 154 51-217 14-167 (220)
97 4ezg_A Putative uncharacterize 99.7 1.3E-17 4.5E-22 122.9 8.4 150 19-187 43-193 (197)
98 4g8a_A TOLL-like receptor 4; l 99.7 6.6E-18 2.2E-22 144.5 7.6 169 48-222 52-221 (635)
99 1h6t_A Internalin B; cell adhe 99.7 4.1E-17 1.4E-21 127.4 11.1 151 45-217 43-193 (291)
100 4ay9_X Follicle-stimulating ho 99.7 1.8E-18 6.2E-23 138.5 2.1 201 8-222 9-222 (350)
101 2xot_A Amphoterin-induced prot 99.7 3.7E-17 1.3E-21 131.4 9.6 159 50-222 20-183 (361)
102 3bz5_A Internalin-J, INLJ; leu 99.7 1.7E-16 5.8E-21 131.4 12.9 171 19-221 63-252 (457)
103 3bz5_A Internalin-J, INLJ; leu 99.7 3.4E-16 1.2E-20 129.5 11.9 169 18-216 40-226 (457)
104 3cvr_A Invasion plasmid antige 99.7 6.6E-17 2.3E-21 136.7 7.7 177 9-223 49-251 (571)
105 1m9s_A Internalin B; cell inva 99.7 3.2E-16 1.1E-20 133.6 11.1 152 44-217 39-190 (605)
106 4b8c_D Glucose-repressible alc 99.6 2.9E-17 1E-21 142.9 2.6 193 8-222 163-361 (727)
107 2ell_A Acidic leucine-rich nuc 99.6 2.3E-16 7.8E-21 113.2 6.9 138 75-217 23-162 (168)
108 1xeu_A Internalin C; cellular 99.6 2.1E-15 7.3E-20 116.0 10.8 145 19-187 40-184 (263)
109 2je0_A Acidic leucine-rich nuc 99.6 1.4E-15 4.9E-20 106.9 8.3 130 76-211 17-149 (149)
110 1w8a_A SLIT protein; signaling 99.6 8.7E-16 3E-20 112.7 6.8 129 51-189 11-140 (192)
111 2je0_A Acidic leucine-rich nuc 99.6 1.3E-15 4.3E-20 107.2 6.9 89 44-138 38-126 (149)
112 3g06_A SSPH2 (leucine-rich rep 99.6 1.8E-15 6.1E-20 129.3 9.1 85 125-223 221-305 (622)
113 3cvr_A Invasion plasmid antige 99.6 1.6E-15 5.6E-20 128.2 8.2 113 48-186 59-171 (571)
114 2ell_A Acidic leucine-rich nuc 99.6 1.5E-15 5.1E-20 108.9 6.9 133 20-162 24-159 (168)
115 1w8a_A SLIT protein; signaling 99.6 1.2E-15 4E-20 112.0 6.2 131 23-165 11-141 (192)
116 3un9_A NLR family member X1; l 99.6 5.3E-15 1.8E-19 119.2 9.9 171 48-222 72-259 (372)
117 3ogk_B Coronatine-insensitive 99.6 1.1E-14 3.6E-19 124.0 11.6 147 73-223 375-534 (592)
118 1dce_A Protein (RAB geranylger 99.6 7.7E-16 2.7E-20 130.4 3.9 182 19-220 348-551 (567)
119 4b8c_D Glucose-repressible alc 99.6 9.7E-16 3.3E-20 133.4 4.5 160 48-223 173-337 (727)
120 3ogk_B Coronatine-insensitive 99.5 2.4E-14 8.2E-19 121.8 11.1 96 121-221 289-397 (592)
121 3un9_A NLR family member X1; l 99.5 1.1E-14 3.8E-19 117.3 8.0 191 19-217 71-285 (372)
122 2wfh_A SLIT homolog 2 protein 99.5 1.2E-14 4.2E-19 106.6 7.2 102 24-138 14-115 (193)
123 2o6r_A Variable lymphocyte rec 99.5 9E-14 3.1E-18 100.5 11.5 108 77-187 29-136 (177)
124 2o6r_A Variable lymphocyte rec 99.5 3.1E-14 1.1E-18 102.9 9.0 111 48-164 28-138 (177)
125 2wfh_A SLIT homolog 2 protein 99.5 5.2E-14 1.8E-18 103.3 10.1 128 51-189 13-140 (193)
126 1jl5_A Outer protein YOPM; leu 99.5 2.4E-14 8.3E-19 118.4 9.3 118 20-163 91-208 (454)
127 1jl5_A Outer protein YOPM; leu 99.5 2.8E-14 9.7E-19 117.9 9.4 119 21-163 132-250 (454)
128 1a9n_A U2A', U2A'; complex (nu 99.5 1.9E-14 6.5E-19 104.0 6.4 132 43-186 14-151 (176)
129 1a9n_A U2A', U2A'; complex (nu 99.5 9.8E-14 3.4E-18 100.2 8.8 132 18-163 17-153 (176)
130 1dce_A Protein (RAB geranylger 99.5 2.7E-15 9.3E-20 127.1 0.0 163 45-223 346-530 (567)
131 3g06_A SSPH2 (leucine-rich rep 99.5 9.4E-14 3.2E-18 118.7 8.8 21 201-222 260-280 (622)
132 1ds9_A Outer arm dynein; leuci 99.5 6.5E-16 2.2E-20 113.9 -4.0 160 45-216 15-186 (198)
133 4ay9_X Follicle-stimulating ho 99.5 6.9E-15 2.4E-19 117.7 1.6 178 19-212 53-233 (350)
134 2p1m_B Transport inhibitor res 99.4 2.2E-13 7.5E-18 115.9 9.2 188 20-218 289-522 (594)
135 3sb4_A Hypothetical leucine ri 99.4 2.9E-13 1E-17 107.3 5.9 194 19-224 48-319 (329)
136 2p1m_B Transport inhibitor res 99.4 2.6E-12 8.9E-17 109.3 12.0 38 123-160 287-324 (594)
137 3g39_A Variable lymphocyte rec 99.4 1.7E-12 5.8E-17 93.2 7.8 105 22-138 11-115 (170)
138 1ds9_A Outer arm dynein; leuci 99.3 4.4E-15 1.5E-19 109.4 -7.4 140 71-220 13-158 (198)
139 2r9u_A Variable lymphocyte rec 99.3 3.3E-12 1.1E-16 92.0 8.0 104 23-138 15-118 (174)
140 3g39_A Variable lymphocyte rec 99.3 3.9E-12 1.3E-16 91.3 6.5 121 77-204 10-134 (170)
141 2r9u_A Variable lymphocyte rec 99.3 7.9E-12 2.7E-16 90.0 6.5 106 77-188 13-118 (174)
142 3sb4_A Hypothetical leucine ri 99.3 1.8E-11 6E-16 97.0 8.7 188 20-223 25-294 (329)
143 2ifg_A High affinity nerve gro 99.1 1.6E-10 5.4E-15 92.1 8.8 102 25-138 13-116 (347)
144 1io0_A Tropomodulin; LRR prote 99.1 1.4E-09 4.9E-14 78.9 12.1 102 38-139 26-137 (185)
145 1io0_A Tropomodulin; LRR prote 99.1 7.3E-10 2.5E-14 80.5 9.1 121 19-139 35-165 (185)
146 4fdw_A Leucine rich hypothetic 99.0 4.7E-10 1.6E-14 91.2 6.6 180 21-220 158-363 (401)
147 2ifg_A High affinity nerve gro 99.0 6.9E-10 2.4E-14 88.4 7.4 88 96-187 27-115 (347)
148 2ra8_A Uncharacterized protein 99.0 2.9E-09 9.9E-14 85.3 10.1 193 20-222 107-327 (362)
149 2ra8_A Uncharacterized protein 99.0 9E-09 3.1E-13 82.4 12.4 169 48-223 107-300 (362)
150 4fdw_A Leucine rich hypothetic 98.9 1.5E-09 5E-14 88.3 6.8 101 21-135 136-236 (401)
151 3rw6_A Nuclear RNA export fact 98.6 2.4E-08 8.1E-13 76.4 5.0 82 73-156 167-257 (267)
152 3e4g_A ATP synthase subunit S, 98.6 6.9E-08 2.4E-12 68.9 6.1 102 101-205 62-170 (176)
153 3e4g_A ATP synthase subunit S, 98.5 2.2E-07 7.4E-12 66.4 5.2 83 49-136 62-150 (176)
154 1pgv_A TMD-1, tropomodulin TMD 98.4 6.1E-06 2.1E-10 59.9 11.4 76 38-113 31-111 (197)
155 1pgv_A TMD-1, tropomodulin TMD 98.3 2.7E-06 9.1E-11 61.8 8.9 118 19-137 40-169 (197)
156 3rw6_A Nuclear RNA export fact 98.3 1.9E-06 6.5E-11 65.8 7.6 83 45-132 167-258 (267)
157 4fs7_A Uncharacterized protein 97.8 3.7E-05 1.3E-09 62.1 6.1 85 95-185 292-376 (394)
158 4gt6_A Cell surface protein; l 97.6 0.00011 3.6E-09 59.4 6.4 131 71-214 260-390 (394)
159 4fs7_A Uncharacterized protein 97.5 9.1E-05 3.1E-09 59.8 5.2 102 71-180 292-393 (394)
160 4gt6_A Cell surface protein; l 97.5 0.00014 4.9E-09 58.6 6.0 135 38-186 255-389 (394)
161 4h09_A Hypothetical leucine ri 97.5 0.00018 6E-09 57.7 5.8 135 40-185 209-343 (379)
162 4h09_A Hypothetical leucine ri 97.4 0.00034 1.2E-08 56.0 6.6 154 44-212 190-343 (379)
163 3rfe_A Platelet glycoprotein I 96.1 0.011 3.7E-07 39.8 5.5 35 50-88 33-67 (130)
164 3rfe_A Platelet glycoprotein I 95.4 0.0074 2.5E-07 40.6 2.3 39 19-61 30-68 (130)
165 2lz0_A Uncharacterized protein 57.7 5.4 0.00018 25.0 1.9 44 38-86 10-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=3.8e-28 Score=192.00 Aligned_cols=208 Identities=22% Similarity=0.326 Sum_probs=144.2
Q ss_pred CCcccC--CCceeecCCc--CceEEeeccccccccchhHHhhhhhcCCCCccEEEccC-CcccCcchhhHHHHHhcCCCC
Q 045865 4 ATDCCQ--WERVECSNTT--GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQ-NKIAGCVENEGIERLSRLNNL 78 (225)
Q Consensus 4 ~~~~c~--~~~~~~~~~~--~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~~~~l~~L 78 (225)
++|||. |.|+.|.... ++|+.|+++++.+... ...+..+.++++|++|++++ |.+.+..|. .+..+++|
T Consensus 30 ~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~--~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~----~l~~l~~L 103 (313)
T 1ogq_A 30 TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP--YPIPSSLANLPYLNFLYIGGINNLVGPIPP----AIAKLTQL 103 (313)
T ss_dssp TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSC--EECCGGGGGCTTCSEEEEEEETTEESCCCG----GGGGCTTC
T ss_pred CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCC--cccChhHhCCCCCCeeeCCCCCcccccCCh----hHhcCCCC
Confidence 568999 9999998544 7999999999998730 03455778888888888884 777766676 57788888
Q ss_pred CEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCC-CCCEEec
Q 045865 79 KMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFP-SLKNLSM 157 (225)
Q Consensus 79 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~-~L~~L~l 157 (225)
++|++++|.+.+..|..+..+++|++|++++|.+.+..|. .+..+++|++|++++|.+.+..|..+.. ++ +|+.|++
T Consensus 104 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~~L~~L~L 181 (313)
T 1ogq_A 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMTI 181 (313)
T ss_dssp SEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCEEECCGGGGC-CCTTCCEEEC
T ss_pred CEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh-HHhcCCCCCeEECcCCcccCcCCHHHhh-hhhcCcEEEC
Confidence 8888888888766777777788888888888877655555 6777777777777777776555555555 55 6666666
Q ss_pred ccccccccccc----------------------CCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCC
Q 045865 158 SFCEVNGVVRG----------------------QGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLG 215 (225)
Q Consensus 158 ~~n~~~~~~~~----------------------~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~ 215 (225)
++|.+++..+. ..+..+++|+.|++++|++ .+..+. +.. +++|+.|++++|.++
T Consensus 182 ~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~-~~~-l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL--AFDLGK-VGL-SKNLNGLDLRNNRIY 257 (313)
T ss_dssp CSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE--CCBGGG-CCC-CTTCCEEECCSSCCE
T ss_pred cCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce--eeecCc-ccc-cCCCCEEECcCCccc
Confidence 66665543333 1455556666666666633 222222 445 667777777777777
Q ss_pred Cccchhhc
Q 045865 216 TNSSRILH 223 (225)
Q Consensus 216 ~~~~~~~~ 223 (225)
+.+|..+.
T Consensus 258 ~~~p~~l~ 265 (313)
T 1ogq_A 258 GTLPQGLT 265 (313)
T ss_dssp ECCCGGGG
T ss_pred CcCChHHh
Confidence 66666553
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.9e-25 Score=177.55 Aligned_cols=205 Identities=17% Similarity=0.171 Sum_probs=146.6
Q ss_pred CCCCcccCCCceeecC--------CcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHh
Q 045865 2 EGATDCCQWERVECSN--------TTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLS 73 (225)
Q Consensus 2 ~~~~~~c~~~~~~~~~--------~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ 73 (225)
....++|.|.|+.|.. ...+++.|+++++.+. .++. .+.++++|++|++++|.+. .+|. .+.
T Consensus 55 ~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~----~lp~-~l~~l~~L~~L~L~~n~l~-~lp~----~~~ 124 (328)
T 4fcg_A 55 SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP----QFPD-QAFRLSHLQHMTIDAAGLM-ELPD----TMQ 124 (328)
T ss_dssp TTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS----SCCS-CGGGGTTCSEEEEESSCCC-CCCS----CGG
T ss_pred cccccccccCCcchhhhHHHHhcccccceeEEEccCCCch----hcCh-hhhhCCCCCEEECCCCCcc-chhH----HHh
Confidence 3567899999999853 3468888888888876 4444 3455777777777777776 3554 466
Q ss_pred cCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCC--------------------------------ccchhhh
Q 045865 74 RLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEG--------------------------------SIDVKEL 121 (225)
Q Consensus 74 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~--------------------------------~~~~~~~ 121 (225)
.+++|++|++++|.+. .+|..+..+++|++|++++|.+.+ .+|. .+
T Consensus 125 ~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l 202 (328)
T 4fcg_A 125 QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA-SI 202 (328)
T ss_dssp GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG-GG
T ss_pred ccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH-hh
Confidence 6777777777777666 345556666666666665544332 3333 45
Q ss_pred ccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcC
Q 045865 122 HNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESM 201 (225)
Q Consensus 122 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~ 201 (225)
..+++|+.|++++|.+.+ ++..+.. +++|+.|++++|.+.+..+. .+..+++|+.|++++| ...+.+|..+.. +
T Consensus 203 ~~l~~L~~L~L~~N~l~~-l~~~l~~-l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n--~~~~~~p~~~~~-l 276 (328)
T 4fcg_A 203 ANLQNLKSLKIRNSPLSA-LGPAIHH-LPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDC--SNLLTLPLDIHR-L 276 (328)
T ss_dssp GGCTTCCEEEEESSCCCC-CCGGGGG-CTTCCEEECTTCTTCCBCCC-CTTCCCCCCEEECTTC--TTCCBCCTTGGG-C
T ss_pred cCCCCCCEEEccCCCCCc-Cchhhcc-CCCCCEEECcCCcchhhhHH-HhcCCCCCCEEECCCC--Cchhhcchhhhc-C
Confidence 566777777777777763 3445666 88888888888887777776 7888889999999988 445677777888 9
Q ss_pred CCCcEEEccCCcCCCccchhhcc
Q 045865 202 PSLKYLLLSYSTLGTNSSRILHQ 224 (225)
Q Consensus 202 ~~L~~L~l~~n~l~~~~~~~~~~ 224 (225)
++|+.|++++|.+.+.+|+.+..
T Consensus 277 ~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 277 TQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp TTCCEEECTTCTTCCCCCGGGGG
T ss_pred CCCCEEeCCCCCchhhccHHHhh
Confidence 99999999999999999987753
No 3
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=4.5e-25 Score=170.84 Aligned_cols=201 Identities=21% Similarity=0.275 Sum_probs=135.2
Q ss_pred CCcccCCCceeecCC--------------------cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCc
Q 045865 4 ATDCCQWERVECSNT--------------------TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGC 63 (225)
Q Consensus 4 ~~~~c~~~~~~~~~~--------------------~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~ 63 (225)
++++|.|.|..|.-. +..+++|++++|++. .+++..|.++++|++|++++|.+...
T Consensus 1 ~~~~C~~~~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~i 76 (270)
T 2o6q_A 1 NEALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLS----SLPSKAFHRLTKLRLLYLNDNKLQTL 76 (270)
T ss_dssp CCCCBGGGTCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCS----CCCTTSSSSCTTCCEEECCSSCCSCC
T ss_pred CCccCCCCCCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCC----eeCHHHhcCCCCCCEEECCCCccCee
Confidence 468999999887521 123566666666665 45555677777777888877777663
Q ss_pred chhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHH
Q 045865 64 VENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQ 143 (225)
Q Consensus 64 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~ 143 (225)
.+. .+..+++|++|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+....+.
T Consensus 77 ~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 151 (270)
T 2o6q_A 77 PAG----IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKG 151 (270)
T ss_dssp CTT----TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred Chh----hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHh
Confidence 333 3566777888888877777655666677777888888877776 44433667777788888887777643333
Q ss_pred HHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCcc
Q 045865 144 SIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNS 218 (225)
Q Consensus 144 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~ 218 (225)
.+.. +++|+.|++++|.++...+. .+.++++|+.|++++|++. ...+..+.. +++|+.|++++|++....
T Consensus 152 ~~~~-l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~--~~~~~~~~~-l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 152 VFDK-LTSLKELRLYNNQLKRVPEG-AFDKLTELKTLKLDNNQLK--RVPEGAFDS-LEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TTTT-CTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCCS--CCCTTTTTT-CTTCCEEECCSSCBCCSS
T ss_pred HccC-CcccceeEecCCcCcEeChh-HhccCCCcCEEECCCCcCC--cCCHHHhcc-ccCCCEEEecCCCeeCCC
Confidence 3455 77788888888877744333 6777788888888888552 222233555 778888888888776543
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=4.2e-25 Score=189.87 Aligned_cols=196 Identities=14% Similarity=0.224 Sum_probs=153.7
Q ss_pred CCCcccCC---CceeecCCcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcc-------------------
Q 045865 3 GATDCCQW---ERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKI------------------- 60 (225)
Q Consensus 3 ~~~~~c~~---~~~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i------------------- 60 (225)
.++|+|.| .|+.|.. .++|+.|+++++++.+ . .+..+.++++|++|++++|.+
T Consensus 62 ~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g---~-lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~ 136 (636)
T 4eco_A 62 FNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASG---R-VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136 (636)
T ss_dssp CSSCGGGTTCCTTEEECT-TCCEEEEECTTSCCEE---E-ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHH
T ss_pred CCCCcccccCCCCeEEcC-CCCEEEEEecCcccCC---c-CChHHhcCccceEEECcCCccccCCccccccccccCchHH
Confidence 46899999 9999984 4899999999999873 3 446789999999999998854
Q ss_pred -----------------------------------------------------------cCcchhhHHHHHhcCCCCCEE
Q 045865 61 -----------------------------------------------------------AGCVENEGIERLSRLNNLKML 81 (225)
Q Consensus 61 -----------------------------------------------------------~~~~~~~~~~~~~~l~~L~~L 81 (225)
.+ +|. .++.+++|++|
T Consensus 137 ~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~----~l~~l~~L~~L 211 (636)
T 4eco_A 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK----AVMRLTKLRQF 211 (636)
T ss_dssp HHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG----GGGGCTTCCEE
T ss_pred HHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCH----HHhcccCCCEE
Confidence 22 444 58899999999
Q ss_pred ECCCCCCChh-----------------hHHhhh--cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCC-CcH-H
Q 045865 82 NLSGNSFNNS-----------------ILSSLT--HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSS-LHI-S 140 (225)
Q Consensus 82 ~l~~~~l~~~-----------------~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~-~ 140 (225)
++++|.+++. +|..+. .+++|++|++++|.+.+.+|. .+..+++|+.|++++|. +.+ .
T Consensus 212 ~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~~l~~~~ 290 (636)
T 4eco_A 212 YMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQ 290 (636)
T ss_dssp EEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TTTTCSSCCEEECTTCTTSCHHH
T ss_pred ECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH-HHhcCCCCCEEECcCCCCCcccc
Confidence 9999999885 788888 999999999999998878886 88999999999999998 887 7
Q ss_pred HHHHHHhhC------CCCCEEecccccccccccc-CCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCc
Q 045865 141 LLQSIASIF------PSLKNLSMSFCEVNGVVRG-QGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYST 213 (225)
Q Consensus 141 ~~~~~~~~~------~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~ 213 (225)
+|..+.. + ++|+.|++++|.++ .+|. ..++++++|+.|++++|++ .+.+| .++. +++|+.|++++|+
T Consensus 291 lp~~~~~-L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l--~g~ip-~~~~-l~~L~~L~L~~N~ 364 (636)
T 4eco_A 291 LKDDWQA-LADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQL--EGKLP-AFGS-EIKLASLNLAYNQ 364 (636)
T ss_dssp HHHHHHH-HHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCC--EEECC-CCEE-EEEESEEECCSSE
T ss_pred chHHHHh-hhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcC--ccchh-hhCC-CCCCCEEECCCCc
Confidence 8877776 5 88888888888887 4432 2467777788888877744 33444 4444 4555555555555
Q ss_pred CC
Q 045865 214 LG 215 (225)
Q Consensus 214 l~ 215 (225)
++
T Consensus 365 l~ 366 (636)
T 4eco_A 365 IT 366 (636)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 5
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=5.1e-24 Score=166.05 Aligned_cols=190 Identities=19% Similarity=0.208 Sum_probs=133.5
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCC-CChhhHHhhh
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNS-FNNSILSSLT 97 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~ 97 (225)
...+++|+++++.+. .+++..+..+++|++|++++|.+....+. .+..+++|++|++++|. +....+..+.
T Consensus 31 ~~~l~~L~l~~n~i~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 31 PAASQRIFLHGNRIS----HVPAASFRACRNLTILWLHSNVLARIDAA----AFTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp CTTCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred CCCceEEEeeCCcCC----ccCHHHcccCCCCCEEECCCCccceeCHh----hcCCccCCCEEeCCCCCCccccCHHHhc
Confidence 457888888888887 56666778888888888888888775555 57778888888888886 6665567777
Q ss_pred cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCC
Q 045865 98 HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSL 177 (225)
Q Consensus 98 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 177 (225)
.+++|++|++++|.+. ..+...+..+++|+.|++++|.+....+..+.. +++|+.|++++|.+++. +...+..+++|
T Consensus 103 ~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~-~~~~~~~l~~L 179 (285)
T 1ozn_A 103 GLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-LGNLTHLFLHGNRISSV-PERAFRGLHSL 179 (285)
T ss_dssp TCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCEE-CTTTTTTCTTC
T ss_pred CCcCCCEEECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhcc-CCCccEEECCCCccccc-CHHHhcCcccc
Confidence 7888888888888776 333336677777888888777776443344555 77777777777777633 33257777777
Q ss_pred cEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865 178 EHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL 222 (225)
Q Consensus 178 ~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~ 222 (225)
+.|++++|++ .+..+..+.. +++|+.|++++|.+++..++.+
T Consensus 180 ~~L~l~~n~l--~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~ 221 (285)
T 1ozn_A 180 DRLLLHQNRV--AHVHPHAFRD-LGRLMTLYLFANNLSALPTEAL 221 (285)
T ss_dssp CEEECCSSCC--CEECTTTTTT-CTTCCEEECCSSCCSCCCHHHH
T ss_pred CEEECCCCcc--cccCHhHccC-cccccEeeCCCCcCCcCCHHHc
Confidence 7777777743 3333555666 7777777777777776655544
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=5e-24 Score=186.80 Aligned_cols=189 Identities=23% Similarity=0.294 Sum_probs=142.6
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 99 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 99 (225)
..+++|++++|++. ...+..+.++++|++|++++|.+.+..|. .+..+++|++|++++|.+.+..|..+..+
T Consensus 466 ~~L~~L~L~~N~l~----~~~p~~l~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 537 (768)
T 3rgz_A 466 KTLETLILDFNDLT----GEIPSGLSNCTNLNWISLSNNRLTGEIPK----WIGRLENLAILKLSNNSFSGNIPAELGDC 537 (768)
T ss_dssp TTCCEEECCSSCCC----SCCCGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred CCceEEEecCCccc----CcCCHHHhcCCCCCEEEccCCccCCcCCh----HHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 45666666666665 23445566777777777777777766666 56777777777777777777677777777
Q ss_pred CCCCEEEcCCCCCCCccchhh-----------------------------------------------------------
Q 045865 100 SSLRSLNLLWNRLEGSIDVKE----------------------------------------------------------- 120 (225)
Q Consensus 100 ~~L~~L~l~~n~~~~~~~~~~----------------------------------------------------------- 120 (225)
++|+.|++++|.+.+.+|...
T Consensus 538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence 888888887777654444311
Q ss_pred ----------hccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccc
Q 045865 121 ----------LHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALN 190 (225)
Q Consensus 121 ----------~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~ 190 (225)
+..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+++.+|. .++++++|+.|++++| .+.
T Consensus 618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~-l~~L~~L~Ls~N~l~g~ip~-~l~~L~~L~~LdLs~N--~l~ 693 (768)
T 3rgz_A 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPD-EVGDLRGLNILDLSSN--KLD 693 (768)
T ss_dssp CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG-CTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSS--CCE
T ss_pred ceecccCchhhhccccccEEECcCCcccccCCHHHhc-cccCCEEeCcCCccCCCCCh-HHhCCCCCCEEECCCC--ccc
Confidence 122456778888888888777888887 88899999999988888888 8888889999999999 556
Q ss_pred hhHHHHHhhcCCCCcEEEccCCcCCCccchh
Q 045865 191 TSFLQIIGESMPSLKYLLLSYSTLGTNSSRI 221 (225)
Q Consensus 191 ~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~ 221 (225)
+.+|..++. ++.|+.|++++|+++|.+|+.
T Consensus 694 g~ip~~l~~-l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 694 GRIPQAMSA-LTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp ECCCGGGGG-CCCCSEEECCSSEEEEECCSS
T ss_pred CcCChHHhC-CCCCCEEECcCCcccccCCCc
Confidence 778888888 889999999999998888864
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=1.2e-23 Score=185.29 Aligned_cols=194 Identities=15% Similarity=0.240 Sum_probs=153.8
Q ss_pred CceeecCCcCceEEeeccccccccchhHHhhhhhcCCCCccEEEc-cCCcccCc--------------------------
Q 045865 11 ERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDL-TQNKIAGC-------------------------- 63 (225)
Q Consensus 11 ~~~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l-~~n~i~~~-------------------------- 63 (225)
.|+.|.. .++|+.|+|+++++.. . .+..+.++++|+.|++ ++|.+.+.
T Consensus 315 ~GV~C~~-~~~V~~L~Ls~~~L~G---~-ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~ 389 (876)
T 4ecn_A 315 PGVDLDN-NGRVTGLSLAGFGAKG---R-VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK 389 (876)
T ss_dssp TTEEECT-TSCEEEEECTTTCCEE---E-ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHH
T ss_pred CceEecC-CCCEEEEECccCCCCC---c-CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhh
Confidence 9999984 6899999999999873 3 4467899999999999 66643221
Q ss_pred --------------------------------------------------chhhHHHHHhcCCCCCEEECCCCCCCh---
Q 045865 64 --------------------------------------------------VENEGIERLSRLNNLKMLNLSGNSFNN--- 90 (225)
Q Consensus 64 --------------------------------------------------~~~~~~~~~~~l~~L~~L~l~~~~l~~--- 90 (225)
+|. .+..+++|+.|++++|.+++
T Consensus 390 ~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~----~l~~L~~L~~L~Ls~N~Lsg~~i 465 (876)
T 4ecn_A 390 MFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK----AIQRLTKLQIIYFANSPFTYDNI 465 (876)
T ss_dssp HHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECG----GGGGCTTCCEEEEESCCCCGGGB
T ss_pred hhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhH----HHhcCCCCCEEECcCCcCCCCcc
Confidence 444 58899999999999999988
Q ss_pred --------------hhHHhhh--cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCC-CcH-HHHHHHHhhCC--
Q 045865 91 --------------SILSSLT--HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSS-LHI-SLLQSIASIFP-- 150 (225)
Q Consensus 91 --------------~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~-~~~~~~~~~~~-- 150 (225)
.+|..+. .+++|++|++++|.+.+.+|. .+..+++|+.|++++|. +.+ .+|..+.. ++
T Consensus 466 ~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~-L~~~ 543 (876)
T 4ecn_A 466 AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTR-LADD 543 (876)
T ss_dssp SSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGGGCSSCCEEECTTCTTSCHHHHHHHHHH-HHHC
T ss_pred cccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHhCCCCCCEEECcCCCCcccccchHHHHh-hhhc
Confidence 3787776 999999999999998878886 89999999999999998 887 77776665 54
Q ss_pred -----CCCEEecccccccccccc-CCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865 151 -----SLKNLSMSFCEVNGVVRG-QGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL 222 (225)
Q Consensus 151 -----~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~ 222 (225)
+|+.|++++|.++ .+|. ..+.++++|+.|++++|++. .+| .++. +++|+.|++++|.++ .+|..+
T Consensus 544 ~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~---~lp-~~~~-L~~L~~L~Ls~N~l~-~lp~~l 614 (876)
T 4ecn_A 544 EDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR---HLE-AFGT-NVKLTDLKLDYNQIE-EIPEDF 614 (876)
T ss_dssp TTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC---BCC-CCCT-TSEESEEECCSSCCS-CCCTTS
T ss_pred ccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc---cch-hhcC-CCcceEEECcCCccc-cchHHH
Confidence 8999999999887 4443 25777888888888888552 555 5666 777777777777777 555443
No 8
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=1.2e-23 Score=161.14 Aligned_cols=192 Identities=18% Similarity=0.245 Sum_probs=144.6
Q ss_pred cccCCCceeecCCcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCC
Q 045865 6 DCCQWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSG 85 (225)
Q Consensus 6 ~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~ 85 (225)
+||.|.|..|.. ..++++++++.+. .++... .+.++.|++++|.+....+. .+..+++|++|++++
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~----~~p~~~---~~~l~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~ 68 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD----SVPSGI---PADTEKLDLQSTGLATLSDA----TFRGLTKLTWLNLDY 68 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS----SCCSCC---CTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc----ccCCCC---CCCCCEEEccCCCcCccCHh----HhcCcccCCEEECCC
Confidence 578888888853 4557888888876 444432 25788888888888876665 578888899999988
Q ss_pred CCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccc
Q 045865 86 NSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGV 165 (225)
Q Consensus 86 ~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 165 (225)
|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+....+..+.. +++|+.|++++|.+++.
T Consensus 69 n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 69 NQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR-LTKLKELRLNTNQLQSI 146 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCC
T ss_pred CcCCccCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhcc-CCcccEEECcCCcCCcc
Confidence 8888877777888888999999888887 555446778888889999888887444444555 88888999988888744
Q ss_pred cccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCc
Q 045865 166 VRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTN 217 (225)
Q Consensus 166 ~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~ 217 (225)
.+. .+..+++|+.|++++|++ .+..+..+.. +++|+.|++++|+++..
T Consensus 147 ~~~-~~~~l~~L~~L~L~~N~l--~~~~~~~~~~-l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 147 PAG-AFDKLTNLQTLSLSTNQL--QSVPHGAFDR-LGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTT-TTTTCTTCCEEECCSSCC--SCCCTTTTTT-CTTCCEEECCSCCBCTT
T ss_pred CHH-HcCcCcCCCEEECCCCcC--CccCHHHHhC-CCCCCEEEeeCCceeCC
Confidence 443 788888899999998855 3333345666 88888999999888876
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=3.2e-24 Score=169.47 Aligned_cols=186 Identities=20% Similarity=0.238 Sum_probs=127.1
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 99 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 99 (225)
.+++.|++++|.+. ...+..+.++++|++|++++|.+.+..|. .+..+++|++|++++|.+++..|..+..+
T Consensus 101 ~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 172 (313)
T 1ogq_A 101 TQLHYLYITHTNVS----GAIPDFLSQIKTLVTLDFSYNALSGTLPP----SISSLPNLVGITFDGNRISGAIPDSYGSF 172 (313)
T ss_dssp TTCSEEEEEEECCE----EECCGGGGGCTTCCEEECCSSEEESCCCG----GGGGCTTCCEEECCSSCCEEECCGGGGCC
T ss_pred CCCCEEECcCCeeC----CcCCHHHhCCCCCCEEeCCCCccCCcCCh----HHhcCCCCCeEECcCCcccCcCCHHHhhh
Confidence 34555555555554 22333455566666666666666554554 45566666666666666655555566666
Q ss_pred C-CCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865 100 S-SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE 178 (225)
Q Consensus 100 ~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 178 (225)
+ .|++|++++|.+.+..|. .+..+. |+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+. +..+++|+
T Consensus 173 ~~~L~~L~L~~N~l~~~~~~-~~~~l~-L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~--~~~l~~L~ 247 (313)
T 1ogq_A 173 SKLFTSMTISRNRLTGKIPP-TFANLN-LAFVDLSRNMLEGDASVLFGS-DKNTQKIHLAKNSLAFDLGK--VGLSKNLN 247 (313)
T ss_dssp CTTCCEEECCSSEEEEECCG-GGGGCC-CSEEECCSSEEEECCGGGCCT-TSCCSEEECCSSEECCBGGG--CCCCTTCC
T ss_pred hhcCcEEECcCCeeeccCCh-HHhCCc-ccEEECcCCcccCcCCHHHhc-CCCCCEEECCCCceeeecCc--ccccCCCC
Confidence 5 666666666666544443 555554 777777777766555556666 88899999999988755444 78889999
Q ss_pred EEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchh
Q 045865 179 HFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRI 221 (225)
Q Consensus 179 ~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~ 221 (225)
+|++++|++ .+.+|..+.. +++|+.|++++|++++.+|..
T Consensus 248 ~L~Ls~N~l--~~~~p~~l~~-l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 248 GLDLRNNRI--YGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCSSCC--EECCCGGGGG-CTTCCEEECCSSEEEEECCCS
T ss_pred EEECcCCcc--cCcCChHHhc-CcCCCEEECcCCcccccCCCC
Confidence 999999954 5577888888 999999999999999988875
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=5.6e-23 Score=160.16 Aligned_cols=187 Identities=19% Similarity=0.205 Sum_probs=159.9
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCc-ccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhh
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNK-IAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 97 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~ 97 (225)
..+++.|++++|.+. .+.+..+..+++|++|++++|. +....+. .+..+++|++|++++|.+....+..+.
T Consensus 55 ~~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~ 126 (285)
T 1ozn_A 55 CRNLTILWLHSNVLA----RIDAAAFTGLALLEQLDLSDNAQLRSVDPA----TFHGLGRLHTLHLDRCGLQELGPGLFR 126 (285)
T ss_dssp CTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSCTTCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CCCCCEEECCCCccc----eeCHhhcCCccCCCEEeCCCCCCccccCHH----HhcCCcCCCEEECCCCcCCEECHhHhh
Confidence 468999999999987 5667788999999999999997 7765555 588999999999999999987788899
Q ss_pred cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCC
Q 045865 98 HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSL 177 (225)
Q Consensus 98 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 177 (225)
.+++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+. .+.++++|
T Consensus 127 ~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~-~~~~l~~L 203 (285)
T 1ozn_A 127 GLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG-LHSLDRLLLHQNRVAHVHPH-AFRDLGRL 203 (285)
T ss_dssp TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTT-TTTTCTTC
T ss_pred CCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccCHHHhcC-ccccCEEECCCCcccccCHh-HccCcccc
Confidence 9999999999999997 555546888999999999999988544445666 89999999999999866666 89999999
Q ss_pred cEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccc
Q 045865 178 EHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSS 219 (225)
Q Consensus 178 ~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~ 219 (225)
+.|++++|++ .+..+..+.. +++|+.|++++|+++...+
T Consensus 204 ~~L~l~~n~l--~~~~~~~~~~-l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 204 MTLYLFANNL--SALPTEALAP-LRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp CEEECCSSCC--SCCCHHHHTT-CTTCCEEECCSSCEECSGG
T ss_pred cEeeCCCCcC--CcCCHHHccc-CcccCEEeccCCCccCCCC
Confidence 9999999955 4444566888 9999999999999986544
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=2e-23 Score=182.93 Aligned_cols=135 Identities=26% Similarity=0.317 Sum_probs=82.8
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 99 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 99 (225)
..++.|++++|.+. ...+..+..+++|++|++++|.+.+..|. .+..+++|++|++++|.+.+..|..+..+
T Consensus 418 ~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 418 SELVSLHLSFNYLS----GTIPSSLGSLSKLRDLKLWLNMLEGEIPQ----ELMYVKTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp TTCCEEECCSSEEE----SCCCGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred CCCCEEECcCCccc----CcccHHHhcCCCCCEEECCCCcccCcCCH----HHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence 46777777777765 23444556666666666666666655555 45666666666666666665556666666
Q ss_pred CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEecccccccc
Q 045865 100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNG 164 (225)
Q Consensus 100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 164 (225)
++|++|++++|.+.+.+|. .+..+++|+.|++++|.+.+..|..+.. +++|+.|++++|.+++
T Consensus 490 ~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPK-WIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNG 552 (768)
T ss_dssp TTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCEEECCGGGGG-CTTCCEEECCSSEEES
T ss_pred CCCCEEEccCCccCCcCCh-HHhcCCCCCEEECCCCcccCcCCHHHcC-CCCCCEEECCCCccCC
Confidence 6666666666666545554 5555666666666666655555555555 5555555555555443
No 12
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=2e-23 Score=164.26 Aligned_cols=201 Identities=20% Similarity=0.253 Sum_probs=118.7
Q ss_pred cCCCceeecCC---------cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcc--hhhHHHHHhcCC
Q 045865 8 CQWERVECSNT---------TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCV--ENEGIERLSRLN 76 (225)
Q Consensus 8 c~~~~~~~~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~~~~~l~ 76 (225)
|.|.++.|... ...+++|++++|++. .++...|.++++|++|++++|.+.... +. .+..++
T Consensus 7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~~~~~ 78 (306)
T 2z66_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ----SDFGTT 78 (306)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCEEEEEEH----HHHSCS
T ss_pred eCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccC----ccCHhHhhccccCCEEECCCCccCcccCccc----cccccc
Confidence 77888888752 257899999999987 677777899999999999999887432 33 355677
Q ss_pred CCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHH---------------
Q 045865 77 NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISL--------------- 141 (225)
Q Consensus 77 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--------------- 141 (225)
+|++|++++|.+.. .+..+..+++|++|++++|.+....+...+..+++|+.|++++|.+.+..
T Consensus 79 ~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 79 SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp CCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred ccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence 88888887777654 33445555666666666665542221123444445555555544443322
Q ss_pred ----------HHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccC
Q 045865 142 ----------LQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSY 211 (225)
Q Consensus 142 ----------~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~ 211 (225)
+..+.. +++|+.|++++|.+++..+. .+..+++|+.|++++|++. +..+..+.. +++|+.|++++
T Consensus 158 ~~n~l~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~--~~~~~~~~~-l~~L~~L~L~~ 232 (306)
T 2z66_A 158 AGNSFQENFLPDIFTE-LRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMSHNNFF--SLDTFPYKC-LNSLQVLDYSL 232 (306)
T ss_dssp TTCEEGGGEECSCCTT-CTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCS--BCCSGGGTT-CTTCCEEECTT
T ss_pred CCCccccccchhHHhh-CcCCCEEECCCCCcCCcCHH-HhcCCCCCCEEECCCCccC--ccChhhccC-cccCCEeECCC
Confidence 233333 45555555555555433333 4555555555555555432 111122444 56666666666
Q ss_pred CcCCCccchhh
Q 045865 212 STLGTNSSRIL 222 (225)
Q Consensus 212 n~l~~~~~~~~ 222 (225)
|++++..|..+
T Consensus 233 N~l~~~~~~~~ 243 (306)
T 2z66_A 233 NHIMTSKKQEL 243 (306)
T ss_dssp SCCCBCSSSSC
T ss_pred CCCcccCHHHH
Confidence 66665555443
No 13
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.4e-22 Score=156.87 Aligned_cols=183 Identities=20% Similarity=0.261 Sum_probs=112.7
Q ss_pred EEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCC
Q 045865 23 IALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL 102 (225)
Q Consensus 23 ~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L 102 (225)
+.++++++++. .++... .+.+++|++++|.+....+. .+..+++|++|++++|.++...+..+..+++|
T Consensus 19 ~~l~~~~~~l~----~ip~~~---~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L 87 (270)
T 2o6q_A 19 NSVDCSSKKLT----AIPSNI---PADTKKLDLQSNKLSSLPSK----AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87 (270)
T ss_dssp TEEECTTSCCS----SCCSCC---CTTCSEEECCSSCCSCCCTT----SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC
T ss_pred CEEEccCCCCC----ccCCCC---CCCCCEEECcCCCCCeeCHH----HhcCCCCCCEEECCCCccCeeChhhhcCCCCC
Confidence 35666666665 333222 14566777777777664443 46667777777777777766555555667777
Q ss_pred CEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEc
Q 045865 103 RSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDM 182 (225)
Q Consensus 103 ~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l 182 (225)
++|++++|.+. .++...+..+++|+.|++++|.+....+..+.. +++|+.|++++|.+++. +...+..+++|+.|++
T Consensus 88 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 88 ETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS-LTKLTYLSLGYNELQSL-PKGVFDKLTSLKELRL 164 (270)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEEC
T ss_pred CEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCc-CcCCCEEECCCCcCCcc-CHhHccCCcccceeEe
Confidence 77777777766 444435666677777777777766443444445 67777777777776633 3325667777777777
Q ss_pred cCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865 183 RFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL 222 (225)
Q Consensus 183 ~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~ 222 (225)
++|++ ....+..+.. +++|+.|++++|++++..+..|
T Consensus 165 ~~n~l--~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~ 201 (270)
T 2o6q_A 165 YNNQL--KRVPEGAFDK-LTELKTLKLDNNQLKRVPEGAF 201 (270)
T ss_dssp CSSCC--SCCCTTTTTT-CTTCCEEECCSSCCSCCCTTTT
T ss_pred cCCcC--cEeChhHhcc-CCCcCEEECCCCcCCcCCHHHh
Confidence 77744 2222233555 6777777777777776555443
No 14
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=1e-22 Score=163.37 Aligned_cols=202 Identities=25% Similarity=0.296 Sum_probs=165.8
Q ss_pred CCcccCCCceeecCC-----------cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHH
Q 045865 4 ATDCCQWERVECSNT-----------TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERL 72 (225)
Q Consensus 4 ~~~~c~~~~~~~~~~-----------~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~ 72 (225)
...+|.|.++ |.-. ...+++|++++|++. .+++..+.++++|++|++++|.+....+. .+
T Consensus 26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~ 96 (353)
T 2z80_A 26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRIT----YISNSDLQRCVNLQALVLTSNGINTIEED----SF 96 (353)
T ss_dssp -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTT----TT
T ss_pred cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCc----ccCHHHhccCCCCCEEECCCCccCccCHh----hc
Confidence 3567888877 4421 247899999999997 66777889999999999999999886565 58
Q ss_pred hcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccch-hhhccCCCCceeecCCCC-CcHHHHHHHHhhCC
Q 045865 73 SRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDV-KELHNFTNLEYLTLESSS-LHISLLQSIASIFP 150 (225)
Q Consensus 73 ~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~ 150 (225)
..+++|++|++++|.++...+..+..+++|++|++++|.+. .++. ..+..+++|+.|++++|. +....+..+.. ++
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-l~ 174 (353)
T 2z80_A 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG-LT 174 (353)
T ss_dssp TTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT-CC
T ss_pred CCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccC-CC
Confidence 89999999999999999877777899999999999999997 5553 468889999999999984 55444456666 89
Q ss_pred CCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccch
Q 045865 151 SLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSR 220 (225)
Q Consensus 151 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~ 220 (225)
+|+.|++++|.+++..+. .+..+++|++|++++|++ ..++..+...+++|+.|++++|.+++..+.
T Consensus 175 ~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l---~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 240 (353)
T 2z80_A 175 FLEELEIDASDLQSYEPK-SLKSIQNVSHLILHMKQH---ILLLEIFVDVTSSVECLELRDTDLDTFHFS 240 (353)
T ss_dssp EEEEEEEEETTCCEECTT-TTTTCSEEEEEEEECSCS---TTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred CCCEEECCCCCcCccCHH-HHhccccCCeecCCCCcc---ccchhhhhhhcccccEEECCCCcccccccc
Confidence 999999999999866666 899999999999999965 455554433399999999999999986544
No 15
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=5.6e-22 Score=153.60 Aligned_cols=183 Identities=20% Similarity=0.285 Sum_probs=141.5
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~ 98 (225)
...++.|+++++.+. .+. .+..+++|++|++++|.+.. .+ .+..+++|++|++++|.+++..+..+..
T Consensus 40 l~~L~~L~l~~~~i~----~~~--~l~~l~~L~~L~l~~n~l~~-~~-----~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 107 (272)
T 3rfs_A 40 LNSIDQIIANNSDIK----SVQ--GIQYLPNVRYLALGGNKLHD-IS-----ALKELTNLTYLILTGNQLQSLPNGVFDK 107 (272)
T ss_dssp HTTCCEEECTTSCCC----CCT--TGGGCTTCCEEECTTSCCCC-CG-----GGTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred ccceeeeeeCCCCcc----ccc--ccccCCCCcEEECCCCCCCC-ch-----hhcCCCCCCEEECCCCccCccChhHhcC
Confidence 457888899888876 222 36778889999999988876 33 3788899999999999888777777788
Q ss_pred CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865 99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE 178 (225)
Q Consensus 99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 178 (225)
+++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+. .+..+++|+
T Consensus 108 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~ 184 (272)
T 3rfs_A 108 LTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK-LTNLTELDLSYNQLQSLPEG-VFDKLTQLK 184 (272)
T ss_dssp CTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTT-TTTTCTTCC
T ss_pred CcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhcc-CccCCEEECCCCCcCccCHH-HhcCCccCC
Confidence 899999999999887 444436788888999999998887544444555 88899999999988854444 778888999
Q ss_pred EEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccc
Q 045865 179 HFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSS 219 (225)
Q Consensus 179 ~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~ 219 (225)
.|++++|++ .+..+..+.. +++|+.|++++|++.+..|
T Consensus 185 ~L~L~~N~l--~~~~~~~~~~-l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 185 DLRLYQNQL--KSVPDGVFDR-LTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp EEECCSSCC--SCCCTTTTTT-CTTCCEEECCSSCBCCCTT
T ss_pred EEECCCCcC--CccCHHHHhC-CcCCCEEEccCCCccccCc
Confidence 999999955 3333445666 8899999999998887665
No 16
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=5.2e-22 Score=163.70 Aligned_cols=188 Identities=22% Similarity=0.262 Sum_probs=124.1
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 99 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 99 (225)
..++.|++++|++. .+.+..|.++++|++|++++|.+....+. .|..+++|++|++++|.++...+..+..+
T Consensus 64 ~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 135 (440)
T 3zyj_A 64 TNTRLLNLHENQIQ----IIKVNSFKHLRHLEILQLSRNHIRTIEIG----AFNGLANLNTLELFDNRLTTIPNGAFVYL 135 (440)
T ss_dssp TTCSEEECCSCCCC----EECTTTTSSCSSCCEEECCSSCCCEECGG----GGTTCSSCCEEECCSSCCSSCCTTTSCSC
T ss_pred CCCcEEEccCCcCC----eeCHHHhhCCCCCCEEECCCCcCCccChh----hccCCccCCEEECCCCcCCeeCHhHhhcc
Confidence 46778888888887 56666777888888888888887765444 57777788888888777776555566677
Q ss_pred CCCCEEEcCCCCCCCccchhhh-------------------------ccCCCCceeecCCCCCcHHHHHHHHhhCCCCCE
Q 045865 100 SSLRSLNLLWNRLEGSIDVKEL-------------------------HNFTNLEYLTLESSSLHISLLQSIASIFPSLKN 154 (225)
Q Consensus 100 ~~L~~L~l~~n~~~~~~~~~~~-------------------------~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 154 (225)
++|++|++++|.+. .++...+ ..+++|+.|++++|.+.. ++ .+.. +++|+.
T Consensus 136 ~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~-l~~L~~ 211 (440)
T 3zyj_A 136 SKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTP-LIKLDE 211 (440)
T ss_dssp SSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTT-CSSCCE
T ss_pred ccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCC-CcccCE
Confidence 77777777777665 3333233 444555555555555442 12 2333 566666
Q ss_pred EeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhhc
Q 045865 155 LSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRILH 223 (225)
Q Consensus 155 L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~~ 223 (225)
|++++|.+++..+. .|.++++|+.|++++|++ .+..+..+.. +++|+.|+|++|+|++..+..|.
T Consensus 212 L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~l--~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 212 LDLSGNHLSAIRPG-SFQGLMHLQKLWMIQSQI--QVIERNAFDN-LQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp EECTTSCCCEECTT-TTTTCTTCCEEECTTCCC--CEECTTSSTT-CTTCCEEECTTSCCCCCCTTTTS
T ss_pred EECCCCccCccChh-hhccCccCCEEECCCCce--eEEChhhhcC-CCCCCEEECCCCCCCccChhHhc
Confidence 77777766644444 677777777777777744 3333445666 78888888888888876665543
No 17
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=3.1e-22 Score=155.05 Aligned_cols=182 Identities=23% Similarity=0.210 Sum_probs=155.2
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~ 98 (225)
...++.|++++|.+.. + ..+..+++|++|++++|.+....+. .+..+++|++|++++|.+++..+..+..
T Consensus 62 l~~L~~L~l~~n~l~~----~--~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 131 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHD----I--SALKELTNLTYLILTGNQLQSLPNG----VFDKLTNLKELVLVENQLQSLPDGVFDK 131 (272)
T ss_dssp CTTCCEEECTTSCCCC----C--GGGTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred CCCCcEEECCCCCCCC----c--hhhcCCCCCCEEECCCCccCccChh----HhcCCcCCCEEECCCCcCCccCHHHhcc
Confidence 4689999999999873 2 3678999999999999999985555 5789999999999999999877777899
Q ss_pred CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865 99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE 178 (225)
Q Consensus 99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 178 (225)
+++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+. .+..+++|+
T Consensus 132 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~ 208 (272)
T 3rfs_A 132 LTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK-LTQLKDLRLYQNQLKSVPDG-VFDRLTSLQ 208 (272)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCSCCCTT-TTTTCTTCC
T ss_pred CCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcC-CccCCEEECCCCcCCccCHH-HHhCCcCCC
Confidence 999999999999998 555446788999999999999998655555566 89999999999999865554 789999999
Q ss_pred EEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhhc
Q 045865 179 HFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRILH 223 (225)
Q Consensus 179 ~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~~ 223 (225)
.+++++|++. +. +++|+.+++..|.++|.+|.++.
T Consensus 209 ~L~l~~N~~~---------~~-~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 209 YIWLHDNPWD---------CT-CPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp EEECCSSCBC---------CC-TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred EEEccCCCcc---------cc-CcHHHHHHHHHHhCCCcccCccc
Confidence 9999999652 33 78899999999999999998765
No 18
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=4.6e-22 Score=164.56 Aligned_cols=187 Identities=22% Similarity=0.212 Sum_probs=125.1
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 99 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 99 (225)
..++.|++++|++. .+.+..|.++++|++|++++|.+....+. .|..+++|++|++++|.++...+..+..+
T Consensus 75 ~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 146 (452)
T 3zyi_A 75 SNTRYLNLMENNIQ----MIQADTFRHLHHLEVLQLGRNSIRQIEVG----AFNGLASLNTLELFDNWLTVIPSGAFEYL 146 (452)
T ss_dssp TTCSEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCSBCCTTTSSSC
T ss_pred CCccEEECcCCcCc----eECHHHcCCCCCCCEEECCCCccCCcChh----hccCcccCCEEECCCCcCCccChhhhccc
Confidence 57899999999987 56677888899999999999988875555 57888888888888888887666677778
Q ss_pred CCCCEEEcCCCCCCCccchhhhccCCCCcee-------------------------ecCCCCCcHHHHHHHHhhCCCCCE
Q 045865 100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYL-------------------------TLESSSLHISLLQSIASIFPSLKN 154 (225)
Q Consensus 100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l-------------------------~l~~~~~~~~~~~~~~~~~~~L~~ 154 (225)
++|++|++++|.+. .++...+..+++|+.| ++++|.+.+. + .+.. +++|+.
T Consensus 147 ~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~-l~~L~~ 222 (452)
T 3zyi_A 147 SKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTP-LVGLEE 222 (452)
T ss_dssp TTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTT-CTTCCE
T ss_pred CCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccc-cccccE
Confidence 88888888888776 4443344444444444 4444444321 1 2333 455666
Q ss_pred EeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865 155 LSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL 222 (225)
Q Consensus 155 L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~ 222 (225)
|++++|.+++..+. .|.++++|+.|++++|++ ....+..+.. +++|+.|++++|+|++..+..|
T Consensus 223 L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~l--~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 223 LEMSGNHFPEIRPG-SFHGLSSLKKLWVMNSQV--SLIERNAFDG-LASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp EECTTSCCSEECGG-GGTTCTTCCEEECTTSCC--CEECTTTTTT-CTTCCEEECCSSCCSCCCTTSS
T ss_pred EECcCCcCcccCcc-cccCccCCCEEEeCCCcC--ceECHHHhcC-CCCCCEEECCCCcCCccChHHh
Confidence 66666665544344 566666666666666643 2333445555 7777777777777776555544
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=5.7e-22 Score=163.88 Aligned_cols=141 Identities=23% Similarity=0.305 Sum_probs=115.6
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 99 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 99 (225)
.+++.|++++|.+. .+.+..+.++++|++|++++|.+....++. .|..+++|++|++++|.+.+..+..+..+
T Consensus 30 ~~l~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 102 (455)
T 3v47_A 30 AHVNYVDLSLNSIA----ELNETSFSRLQDLQFLKVEQQTPGLVIRNN---TFRGLSSLIILKLDYNQFLQLETGAFNGL 102 (455)
T ss_dssp TTCCEEECCSSCCC----EECTTTTSSCTTCCEEECCCCSTTCEECTT---TTTTCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred CccCEEEecCCccC----cCChhHhccCccccEEECcCCcccceECcc---cccccccCCEEeCCCCccCccChhhccCc
Confidence 57899999999997 566778899999999999999887545432 57889999999999999988778889999
Q ss_pred CCCCEEEcCCCCCCCccch-hhhccCCCCceeecCCCCCcHHHHHH-HHhhCCCCCEEecccccccccccc
Q 045865 100 SSLRSLNLLWNRLEGSIDV-KELHNFTNLEYLTLESSSLHISLLQS-IASIFPSLKNLSMSFCEVNGVVRG 168 (225)
Q Consensus 100 ~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~ 168 (225)
++|++|++++|.+.+..+. ..+..+++|+.|++++|.+.+..+.. +.. +++|+.|++++|.+++..+.
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~ 172 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN-MRRFHVLDLTFNKVKSICEE 172 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGG-CTTCCEEECTTCCBSCCCTT
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCC-CCcccEEeCCCCcccccChh
Confidence 9999999999998754333 13778899999999999987655554 555 89999999999988755443
No 20
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=7.5e-22 Score=163.29 Aligned_cols=154 Identities=18% Similarity=0.211 Sum_probs=114.9
Q ss_pred ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865 21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 100 (225)
Q Consensus 21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~ 100 (225)
....++.++..+. .++... .+.+++|++++|.+....+. .|..+++|++|++++|.+....+..+..++
T Consensus 55 ~~~~v~c~~~~l~----~iP~~~---~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 123 (452)
T 3zyi_A 55 QFSKVVCTRRGLS----EVPQGI---PSNTRYLNLMENNIQMIQAD----TFRHLHHLEVLQLGRNSIRQIEVGAFNGLA 123 (452)
T ss_dssp SSCEEECCSSCCS----SCCSCC---CTTCSEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCcEEEECCCCcC----ccCCCC---CCCccEEECcCCcCceECHH----HcCCCCCCCEEECCCCccCCcChhhccCcc
Confidence 3456777777776 444422 25789999999999986666 689999999999999999988888999999
Q ss_pred CCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEE
Q 045865 101 SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHF 180 (225)
Q Consensus 101 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l 180 (225)
+|++|++++|.+. .++...+..+++|+.|++++|.+....+..+.. +++|+.|++++|+..+.++...+.++++|+.|
T Consensus 124 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 124 SLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR-VPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp TCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTT-CTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred cCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhc-CCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 9999999999998 666557888999999999999987443334444 67777777776443334443355555555555
Q ss_pred EccCCcc
Q 045865 181 DMRFARI 187 (225)
Q Consensus 181 ~l~~n~i 187 (225)
++++|++
T Consensus 202 ~L~~n~l 208 (452)
T 3zyi_A 202 NLGMCNI 208 (452)
T ss_dssp ECTTSCC
T ss_pred ECCCCcc
Confidence 5555543
No 21
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=1.9e-22 Score=156.49 Aligned_cols=187 Identities=20% Similarity=0.259 Sum_probs=125.7
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 99 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 99 (225)
..+++|++++|++. .+++..+.++++|++|++++|.+....+. .+..+++|++|++++|.+....+..+..+
T Consensus 28 ~~l~~L~ls~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (276)
T 2z62_A 28 FSTKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (276)
T ss_dssp TTCCEEECTTCCCC----EECTTTTTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CCccEEECCCCccc----ccCHhHhccccCCcEEECCCCcCCccCHH----HccCCcCCCEEECCCCccCccChhhhcCC
Confidence 46888888888887 55666777888888888888888765444 46778888888888888877666677777
Q ss_pred CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHH-HHHHHHhhCCCCCEEecccccccccccc----------
Q 045865 100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHIS-LLQSIASIFPSLKNLSMSFCEVNGVVRG---------- 168 (225)
Q Consensus 100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~---------- 168 (225)
++|++|++.+|.+. .++...+..+++|+.|++++|.+.+. .+..+.. +++|+.|++++|.+++..+.
T Consensus 100 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 100 SSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp TTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-CTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred ccccEEECCCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhcc-CCCCCEEECCCCCCCcCCHHHhhhhhhccc
Confidence 77777777777776 33322466667777777777766532 3445555 67777777777766532211
Q ss_pred ----------------CCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccc
Q 045865 169 ----------------QGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSS 219 (225)
Q Consensus 169 ----------------~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~ 219 (225)
.......+|+.|++++|++ .+..+..+.. +++|+.|++++|+++...|
T Consensus 178 l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~~-l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 178 LNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQL--KSVPDGIFDR-LTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCC--SCCCTTTTTT-CCSCCEEECCSSCBCCCTT
T ss_pred cceeeecCCCcccccCccccCCCcccEEECCCCce--eecCHhHhcc-cccccEEEccCCcccccCC
Confidence 0112223678888888855 2222233466 8888888888888887665
No 22
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=161.55 Aligned_cols=183 Identities=18% Similarity=0.200 Sum_probs=131.4
Q ss_pred ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865 21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 100 (225)
Q Consensus 21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~ 100 (225)
....++.++..+. .++... .+.++.|++++|.+....+. .|..+++|++|++++|.+....+..|..++
T Consensus 44 ~~~~v~c~~~~l~----~iP~~~---~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~ 112 (440)
T 3zyj_A 44 QFSKVICVRKNLR----EVPDGI---STNTRLLNLHENQIQIIKVN----SFKHLRHLEILQLSRNHIRTIEIGAFNGLA 112 (440)
T ss_dssp TSCEEECCSCCCS----SCCSCC---CTTCSEEECCSCCCCEECTT----TTSSCSSCCEEECCSSCCCEECGGGGTTCS
T ss_pred CCCEEEeCCCCcC----cCCCCC---CCCCcEEEccCCcCCeeCHH----HhhCCCCCCEEECCCCcCCccChhhccCCc
Confidence 3456777777776 455433 25788999999999886655 689999999999999999988888999999
Q ss_pred CCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEE
Q 045865 101 SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHF 180 (225)
Q Consensus 101 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l 180 (225)
+|++|++++|.+. .++...+..+++|+.|++++|.+....+..+.. +++|+.|++++|+....++...|.++++|+.|
T Consensus 113 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~-l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 113 NLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR-IPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp SCCEEECCSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTT-CTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred cCCEEECCCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhh-CcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 9999999999998 666557889999999999999987544444555 77788888877544334444456666666666
Q ss_pred EccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchh
Q 045865 181 DMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRI 221 (225)
Q Consensus 181 ~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~ 221 (225)
++++|++. .+| .+.. +++|+.|++++|.+++..|..
T Consensus 191 ~L~~n~l~---~~~-~~~~-l~~L~~L~Ls~N~l~~~~~~~ 226 (440)
T 3zyj_A 191 NLAMCNLR---EIP-NLTP-LIKLDELDLSGNHLSAIRPGS 226 (440)
T ss_dssp ECTTSCCS---SCC-CCTT-CSSCCEEECTTSCCCEECTTT
T ss_pred cCCCCcCc---ccc-ccCC-CcccCEEECCCCccCccChhh
Confidence 66666442 222 1333 555555555555555444443
No 23
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.4e-21 Score=152.80 Aligned_cols=180 Identities=18% Similarity=0.202 Sum_probs=145.5
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~ 98 (225)
...++.|++++|.+. .+.+..+..+++|++|++++|.+.. .+. ...+++|++|++++|.+.. +|..+..
T Consensus 30 ~~~l~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~n~l~~-~~~-----~~~l~~L~~L~Ls~N~l~~-l~~~~~~ 98 (290)
T 1p9a_G 30 PKDTTILHLSENLLY----TFSLATLMPYTRLTQLNLDRAELTK-LQV-----DGTLPVLGTLDLSHNQLQS-LPLLGQT 98 (290)
T ss_dssp CTTCCEEECTTSCCS----EEEGGGGTTCTTCCEEECTTSCCCE-EEC-----CSCCTTCCEEECCSSCCSS-CCCCTTT
T ss_pred CCCCCEEEcCCCcCC----ccCHHHhhcCCCCCEEECCCCccCc-ccC-----CCCCCcCCEEECCCCcCCc-Cchhhcc
Confidence 357889999999887 5667788899999999999999876 333 3678899999999999875 5667778
Q ss_pred CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865 99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE 178 (225)
Q Consensus 99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 178 (225)
+++|++|++++|.+. .++...+..+++|+.|++++|.+....+..+.. +++|+.|++++|.++ ..+...+..+++|+
T Consensus 99 l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 99 LPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTP-TPKLEKLSLANNNLT-ELPAGLLNGLENLD 175 (290)
T ss_dssp CTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECTTSCCS-CCCTTTTTTCTTCC
T ss_pred CCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhccc-ccCCCEEECCCCcCC-ccCHHHhcCcCCCC
Confidence 899999999999987 555447888899999999999887544444555 889999999999988 44544788899999
Q ss_pred EEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCC
Q 045865 179 HFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGT 216 (225)
Q Consensus 179 ~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~ 216 (225)
.|++++|++ ..+|..+.. +++|+.+++.+|++.-
T Consensus 176 ~L~L~~N~l---~~ip~~~~~-~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 176 TLLLQENSL---YTIPKGFFG-SHLLPFAFLHGNPWLC 209 (290)
T ss_dssp EEECCSSCC---CCCCTTTTT-TCCCSEEECCSCCBCC
T ss_pred EEECCCCcC---CccChhhcc-cccCCeEEeCCCCccC
Confidence 999999976 366777777 8889999999998864
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=4.3e-21 Score=158.63 Aligned_cols=87 Identities=28% Similarity=0.393 Sum_probs=41.7
Q ss_pred ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHh-hhcC
Q 045865 21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSS-LTHL 99 (225)
Q Consensus 21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~-l~~l 99 (225)
++++|++++|++. .+.+..+.++++|++|++++|.+.+..+.. ..+..+++|++|++++|.+.+..|.. +..+
T Consensus 80 ~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 153 (455)
T 3v47_A 80 SLIILKLDYNQFL----QLETGAFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153 (455)
T ss_dssp TCCEEECTTCTTC----EECTTTTTTCTTCCEEECTTSCCBTHHHHS--STTTTCTTCCEEECCSSBCCSCCCCGGGGGC
T ss_pred cCCEEeCCCCccC----ccChhhccCcccCCEEeCCCCCCCccccCc--ccccCcccCCEEECCCCccCccCcccccCCC
Confidence 4444555554443 333344445555555555555544322210 01445555555555555555443333 4555
Q ss_pred CCCCEEEcCCCCCC
Q 045865 100 SSLRSLNLLWNRLE 113 (225)
Q Consensus 100 ~~L~~L~l~~n~~~ 113 (225)
++|++|++++|.+.
T Consensus 154 ~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 154 RRFHVLDLTFNKVK 167 (455)
T ss_dssp TTCCEEECTTCCBS
T ss_pred CcccEEeCCCCccc
Confidence 56666666665554
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=2.2e-21 Score=163.87 Aligned_cols=196 Identities=23% Similarity=0.339 Sum_probs=163.4
Q ss_pred ccCCCceeecCC-----------cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcC
Q 045865 7 CCQWERVECSNT-----------TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRL 75 (225)
Q Consensus 7 ~c~~~~~~~~~~-----------~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l 75 (225)
.|.|.++ |+.. ...+++|++++|.+. .+.+..|.++++|++|++++|.+....+. .|..+
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l 73 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKIT----YIGHGDLRACANLQVLILKSSRINTIEGD----AFYSL 73 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCC----EECSSTTSSCTTCCEEECTTSCCCEECTT----TTTTC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccC----ccChhhhhcCCcccEEECCCCCcCccChh----hcccc
Confidence 4888887 6532 247999999999987 56677889999999999999999986665 58999
Q ss_pred CCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCc-cchhhhccCCCCceeecCCCCCcHHHH-HHHHhhCCCCC
Q 045865 76 NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGS-IDVKELHNFTNLEYLTLESSSLHISLL-QSIASIFPSLK 153 (225)
Q Consensus 76 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~~L~ 153 (225)
++|++|++++|.+.+..+..+..+++|++|++++|.+... .+. .+..+++|+.|++++|...+..+ ..+.. +++|+
T Consensus 74 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~-l~~L~ 151 (549)
T 2z81_A 74 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAG-LTSLN 151 (549)
T ss_dssp TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTT-CCEEE
T ss_pred ccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhc-ccccC
Confidence 9999999999999998888899999999999999998742 333 78889999999999998433443 45666 99999
Q ss_pred EEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCc
Q 045865 154 NLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTN 217 (225)
Q Consensus 154 ~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~ 217 (225)
+|++++|.+++..+. .+..+++|+.++++.|.+ ..++..+...+++|+.|++++|.+++.
T Consensus 152 ~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~---~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 152 ELEIKALSLRNYQSQ-SLKSIRDIHHLTLHLSES---AFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp EEEEEETTCCEECTT-TTTTCSEEEEEEEECSBS---TTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred eeeccCCcccccChh-hhhccccCceEecccCcc---cccchhhHhhcccccEEEccCCccccc
Confidence 999999999877777 899999999999999965 345555443389999999999999874
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=3.8e-21 Score=156.13 Aligned_cols=135 Identities=20% Similarity=0.193 Sum_probs=101.0
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 99 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 99 (225)
..++.++++++.+. .+++..+..+++|++|++++|.+....+. .+..+++|++|++++|.+....+..+..+
T Consensus 45 ~~l~~l~l~~~~l~----~l~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp CCCSEEEEESCEES----EECTHHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCceEEEecCCchh----hCChhHhcccccCcEEECCCCcccccChh----hccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 46677888888776 66777778888888888888888765444 47778888888888888877667777788
Q ss_pred CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEecccccccc
Q 045865 100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNG 164 (225)
Q Consensus 100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 164 (225)
++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++
T Consensus 117 ~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 117 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA-TTSLQNLQLSSNRLTH 179 (390)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSS-CTTCCEEECCSSCCSB
T ss_pred CCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccC-CCCCCEEECCCCcCCc
Confidence 88888888888876 555535677788888888888776544445555 7778888887777653
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=4.7e-22 Score=156.37 Aligned_cols=185 Identities=24% Similarity=0.257 Sum_probs=145.3
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 99 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 99 (225)
..++.|++++|.+. .++ ..+..+++|++|++++|.+....+.. .+..+++|++|++++|.+....+..+..+
T Consensus 78 ~~L~~L~Ls~n~i~----~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 149 (306)
T 2z66_A 78 TSLKYLDLSFNGVI----TMS-SNFLGLEQLEHLDFQHSNLKQMSEFS---VFLSLRNLIYLDISHTHTRVAFNGIFNGL 149 (306)
T ss_dssp SCCCEEECCSCSEE----EEE-EEEETCTTCCEEECTTSEEESSTTTT---TTTTCTTCCEEECTTSCCEECSTTTTTTC
T ss_pred cccCEEECCCCccc----cCh-hhcCCCCCCCEEECCCCcccccccch---hhhhccCCCEEECCCCcCCccchhhcccC
Confidence 34555666665554 222 23667888888888888887644311 47788999999999999887777888889
Q ss_pred CCCCEEEcCCCCCCC-ccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865 100 SSLRSLNLLWNRLEG-SIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE 178 (225)
Q Consensus 100 ~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 178 (225)
++|++|++++|.+.+ ..+. .+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+. .+..+++|+
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~ 226 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTF-PYKCLNSLQ 226 (306)
T ss_dssp TTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTSCCSBCCSG-GGTTCTTCC
T ss_pred cCCCEEECCCCccccccchh-HHhhCcCCCEEECCCCCcCCcCHHHhcC-CCCCCEEECCCCccCccChh-hccCcccCC
Confidence 999999999998874 2444 7888999999999999998665667777 99999999999999865444 788999999
Q ss_pred EEEccCCccccchhHHHHHhhcC-CCCcEEEccCCcCCCcc
Q 045865 179 HFDMRFARIALNTSFLQIIGESM-PSLKYLLLSYSTLGTNS 218 (225)
Q Consensus 179 ~l~l~~n~i~~~~~~~~~l~~~~-~~L~~L~l~~n~l~~~~ 218 (225)
.|++++|++ .+..+..+.. + ++|+.|++++|++++..
T Consensus 227 ~L~L~~N~l--~~~~~~~~~~-~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 227 VLDYSLNHI--MTSKKQELQH-FPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp EEECTTSCC--CBCSSSSCCC-CCTTCCEEECTTCCEECSG
T ss_pred EeECCCCCC--cccCHHHHHh-hhccCCEEEccCCCeeccc
Confidence 999999954 4555666776 7 49999999999998764
No 28
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=7.6e-21 Score=145.50 Aligned_cols=190 Identities=22% Similarity=0.240 Sum_probs=147.3
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~ 98 (225)
+..++.|++++|.+. .+.+..+.++++|++|++++|.+....+. .+..+++|++|++++|.++...+..+..
T Consensus 34 ~~~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 105 (251)
T 3m19_A 34 PADTEKLDLQSTGLA----TLSDATFRGLTKLTWLNLDYNQLQTLSAG----VFDDLTELGTLGLANNQLASLPLGVFDH 105 (251)
T ss_dssp CTTCCEEECTTSCCC----CCCTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred CCCCCEEEccCCCcC----ccCHhHhcCcccCCEEECCCCcCCccCHh----HhccCCcCCEEECCCCcccccChhHhcc
Confidence 357899999999998 66777889999999999999999986665 5889999999999999999877788899
Q ss_pred CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865 99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE 178 (225)
Q Consensus 99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 178 (225)
+++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+. .+..+++|+
T Consensus 106 l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~ 182 (251)
T 3m19_A 106 LTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK-LTNLQTLSLSTNQLQSVPHG-AFDRLGKLQ 182 (251)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCSCCCTT-TTTTCTTCC
T ss_pred cCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCc-CcCCCEEECCCCcCCccCHH-HHhCCCCCC
Confidence 999999999999998 556546788999999999999998554445666 89999999999999855444 889999999
Q ss_pred EEEccCCccccc-h---hHHHHHhhcCCCCcEEEccCCcCCCccchh
Q 045865 179 HFDMRFARIALN-T---SFLQIIGESMPSLKYLLLSYSTLGTNSSRI 221 (225)
Q Consensus 179 ~l~l~~n~i~~~-~---~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~ 221 (225)
.+++++|++... . .++.++.. . ..+..+..++.+.+.++..
T Consensus 183 ~L~l~~N~~~c~~~~~~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 227 (251)
T 3m19_A 183 TITLFGNQFDCSRCEILYLSQWIRE-N-SNKVKDGTGQNLHESPDGV 227 (251)
T ss_dssp EEECCSCCBCTTSTTHHHHHHHHHH-S-GGGBCC-------CCGGGC
T ss_pred EEEeeCCceeCCccccHHHHHHHHh-c-ccceeeccCcccccCCCcC
Confidence 999999976433 1 24444443 1 2233344555555544443
No 29
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=3.4e-21 Score=152.04 Aligned_cols=184 Identities=20% Similarity=0.222 Sum_probs=139.8
Q ss_pred cCceEEeeccccccccchhHHhhhhh-cCCCCccEEEccCCcccCcchhhHHHHHhcC-----CCCCEEECCCCCCChhh
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLF-TPFQQLESLDLTQNKIAGCVENEGIERLSRL-----NNLKMLNLSGNSFNNSI 92 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l-----~~L~~L~l~~~~l~~~~ 92 (225)
..++++|++++|++.. .++...+ ..+++|++|++++|.+.+. |. .+..+ ++|++|++++|.+.+..
T Consensus 94 l~~L~~L~L~~n~l~~---~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~----~~~~l~~~~~~~L~~L~L~~N~l~~~~ 165 (312)
T 1wwl_A 94 ISGLQELTLENLEVTG---TAPPPLLEATGPDLNILNLRNVSWATR-DA----WLAELQQWLKPGLKVLSIAQAHSLNFS 165 (312)
T ss_dssp TSCCCEEEEEEEBCBS---CCCCCSSSCCSCCCSEEEEESCBCSSS-SS----HHHHHHTTCCTTCCEEEEESCSCCCCC
T ss_pred cCCccEEEccCCcccc---hhHHHHHHhcCCCccEEEccCCCCcch-hH----HHHHHHHhhcCCCcEEEeeCCCCccch
Confidence 4578899999998863 2333332 7889999999999999885 54 34544 89999999999998877
Q ss_pred HHhhhcCCCCCEEEcCCCCCCCcc--chhhh--ccCCCCceeecCCCCCcH--HHHHHHHhhCCCCCEEecccccccccc
Q 045865 93 LSSLTHLSSLRSLNLLWNRLEGSI--DVKEL--HNFTNLEYLTLESSSLHI--SLLQSIASIFPSLKNLSMSFCEVNGVV 166 (225)
Q Consensus 93 ~~~l~~l~~L~~L~l~~n~~~~~~--~~~~~--~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~ 166 (225)
+..+..+++|++|++++|.+.+.. +. .+ ..+++|+.|++++|.+.. ..+..+...+++|+.|++++|.+++..
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGERGLIS-ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHHHHHH-HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred HHHhccCCCCCEEECCCCCcCcchHHHH-HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 788899999999999999876432 22 33 678899999999999872 333343333899999999999998766
Q ss_pred ccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCc
Q 045865 167 RGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTN 217 (225)
Q Consensus 167 ~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~ 217 (225)
+...+..+++|+.|++++|++. .+|..+. ++|+.|++++|+|++.
T Consensus 245 ~~~~~~~l~~L~~L~Ls~N~l~---~ip~~~~---~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNLSFTGLK---QVPKGLP---AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp CCSCCCCCTTCCEEECTTSCCS---SCCSSCC---SEEEEEECCSSCCCSC
T ss_pred chhhhhhcCCCCEEECCCCccC---hhhhhcc---CCceEEECCCCCCCCC
Confidence 4436677889999999999662 4554432 5788889999988876
No 30
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=4.6e-21 Score=148.63 Aligned_cols=161 Identities=22% Similarity=0.228 Sum_probs=118.5
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~ 98 (225)
...++.|++++|.+. .+.+..+.++++|++|++++|.+....+. .+..+++|++|++++|.+....+..+..
T Consensus 51 l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 122 (276)
T 2z62_A 51 FPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLASLENFPIGH 122 (276)
T ss_dssp CTTCSEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTSCCCCSTTCCCTT
T ss_pred ccCCcEEECCCCcCC----ccCHHHccCCcCCCEEECCCCccCccChh----hhcCCccccEEECCCCCccccCchhccc
Confidence 457888899988887 56666788888888899888888775544 5778888888888888887755556777
Q ss_pred CCCCCEEEcCCCCCCCc-cchhhhccCCCCceeecCCCCCcHHHH---HHHHh-----------------------hCCC
Q 045865 99 LSSLRSLNLLWNRLEGS-IDVKELHNFTNLEYLTLESSSLHISLL---QSIAS-----------------------IFPS 151 (225)
Q Consensus 99 l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~---~~~~~-----------------------~~~~ 151 (225)
+++|++|++++|.+... +|. .+..+++|+.|++++|.+.+..+ ..+.. ...+
T Consensus 123 l~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~ 201 (276)
T 2z62_A 123 LKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201 (276)
T ss_dssp CTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCC
T ss_pred CCCCCEEECcCCccceecCch-hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCc
Confidence 88888888888887632 344 77778888888888887653221 11221 0226
Q ss_pred CCEEeccccccccccccCCCCCCCCCcEEEccCCcccc
Q 045865 152 LKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIAL 189 (225)
Q Consensus 152 L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~ 189 (225)
|+.|++++|.+++. +...+..+++|+.+++++|++..
T Consensus 202 L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 202 LKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp EEEEECCSSCCSCC-CTTTTTTCCSCCEEECCSSCBCC
T ss_pred ccEEECCCCceeec-CHhHhcccccccEEEccCCcccc
Confidence 77888888888744 44378899999999999997643
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=1.2e-21 Score=162.94 Aligned_cols=189 Identities=20% Similarity=0.216 Sum_probs=113.4
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 99 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 99 (225)
..++.|++++|++. .+.+..|.++++|++|++++|.+....+. .|..+++|++|++++|.+....+..+..+
T Consensus 32 ~~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 103 (477)
T 2id5_A 32 TETRLLDLGKNRIK----TLNQDEFASFPHLEELELNENIVSAVEPG----AFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103 (477)
T ss_dssp TTCSEEECCSSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCSCCTTSSTTC
T ss_pred CCCcEEECCCCccc----eECHhHccCCCCCCEEECCCCccCEeChh----hhhCCccCCEEECCCCcCCccCcccccCC
Confidence 46788888888877 55666777788888888888777765555 46777777777777777766555556666
Q ss_pred CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCc------------------------HHHHHHHHhhCCCCCEE
Q 045865 100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH------------------------ISLLQSIASIFPSLKNL 155 (225)
Q Consensus 100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~------------------------~~~~~~~~~~~~~L~~L 155 (225)
++|++|++++|.+....+ ..+..+++|+.|++.+|.+. ...+..+.. +++|+.|
T Consensus 104 ~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L 181 (477)
T 2id5_A 104 SNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH-LHGLIVL 181 (477)
T ss_dssp TTCCEEECTTSCCCEECT-TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTT-CTTCCEE
T ss_pred CCCCEEECCCCccccCCh-hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcc-cCCCcEE
Confidence 777777777766652222 24445555555555555443 322333444 5555555
Q ss_pred eccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865 156 SMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL 222 (225)
Q Consensus 156 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~ 222 (225)
++++|.+.+..+. .+..+++|+.|++++|+ ..+.++..... ..+|+.|++++|.+++..+..+
T Consensus 182 ~l~~n~i~~~~~~-~~~~l~~L~~L~l~~~~--~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~ 244 (477)
T 2id5_A 182 RLRHLNINAIRDY-SFKRLYRLKVLEISHWP--YLDTMTPNCLY-GLNLTSLSITHCNLTAVPYLAV 244 (477)
T ss_dssp EEESCCCCEECTT-CSCSCTTCCEEEEECCT--TCCEECTTTTT-TCCCSEEEEESSCCCSCCHHHH
T ss_pred eCCCCcCcEeChh-hcccCcccceeeCCCCc--cccccCccccc-CccccEEECcCCcccccCHHHh
Confidence 5555555433222 55566666666666652 22333433333 4467777777777775544433
No 32
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=4.6e-21 Score=152.46 Aligned_cols=202 Identities=18% Similarity=0.278 Sum_probs=127.7
Q ss_pred cCCCceeecCC---------cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCC
Q 045865 8 CQWERVECSNT---------TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNL 78 (225)
Q Consensus 8 c~~~~~~~~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L 78 (225)
|.+..+.|... ...++.|++++|.+. .+++..+.++++|++|++++|.+....+. .+..+++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L 104 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS----ELRKDDFKGLQHLYALVLVNNKISKIHEK----AFSPLRKL 104 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECGG----GSTTCTTC
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCC----ccCHhHhhCCCCCcEEECCCCccCccCHh----HhhCcCCC
Confidence 56666666542 247889999999887 56667788899999999999988876566 57888888
Q ss_pred CEEECCCCCCChhh---------------------HHhhhcCCCCCEEEcCCCCCCC-ccchhhhccC------------
Q 045865 79 KMLNLSGNSFNNSI---------------------LSSLTHLSSLRSLNLLWNRLEG-SIDVKELHNF------------ 124 (225)
Q Consensus 79 ~~L~l~~~~l~~~~---------------------~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~l------------ 124 (225)
++|++++|.+.... +..+..+++|+.|++++|.+.. ......+..+
T Consensus 105 ~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l 184 (332)
T 2ft3_A 105 QKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184 (332)
T ss_dssp CEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBC
T ss_pred CEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCC
Confidence 88888888776421 1223444455555555554421 0110011111
Q ss_pred --------CCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHH
Q 045865 125 --------TNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQI 196 (225)
Q Consensus 125 --------~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~ 196 (225)
++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+. .+..+++|+.|++++|++ ..+|..
T Consensus 185 ~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~-l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l---~~lp~~ 259 (332)
T 2ft3_A 185 TGIPKDLPETLNELHLDHNKIQAIELEDLLR-YSKLYRLGLGHNQIRMIENG-SLSFLPTLRELHLDNNKL---SRVPAG 259 (332)
T ss_dssp SSCCSSSCSSCSCCBCCSSCCCCCCTTSSTT-CTTCSCCBCCSSCCCCCCTT-GGGGCTTCCEEECCSSCC---CBCCTT
T ss_pred CccCccccCCCCEEECCCCcCCccCHHHhcC-CCCCCEEECCCCcCCcCChh-HhhCCCCCCEEECCCCcC---eecChh
Confidence 23444444444444333334444 66777777777776644333 566777788888888855 255666
Q ss_pred HhhcCCCCcEEEccCCcCCCccchhhc
Q 045865 197 IGESMPSLKYLLLSYSTLGTNSSRILH 223 (225)
Q Consensus 197 l~~~~~~L~~L~l~~n~l~~~~~~~~~ 223 (225)
+.. +++|+.|++++|++++..+..|+
T Consensus 260 l~~-l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 260 LPD-LKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp GGG-CTTCCEEECCSSCCCBCCTTSSS
T ss_pred hhc-CccCCEEECCCCCCCccChhHcc
Confidence 777 88888888888888876665553
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=8e-21 Score=158.03 Aligned_cols=189 Identities=22% Similarity=0.246 Sum_probs=128.6
Q ss_pred ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865 21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 100 (225)
Q Consensus 21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~ 100 (225)
+++.|++++|.+. .++...|.++++|++|++++|.+....+. .+..+++|++|++++|.+....+..+..++
T Consensus 81 ~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 152 (477)
T 2id5_A 81 NLRTLGLRSNRLK----LIPLGVFTGLSNLTKLDISENKIVILLDY----MFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152 (477)
T ss_dssp TCCEEECCSSCCC----SCCTTSSTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEEECCTTCCEECTTSSTTCT
T ss_pred cCCEEECCCCcCC----ccCcccccCCCCCCEEECCCCccccCChh----HccccccCCEEECCCCccceeChhhccCCC
Confidence 4444444444444 33444445555555555555555443333 355556666666666666555555666667
Q ss_pred CCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEE
Q 045865 101 SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHF 180 (225)
Q Consensus 101 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l 180 (225)
+|+.|++++|.+. .++...+..+++|+.|++.+|.+....+..+.. +++|+.|++++|...+..+. ......+|+.|
T Consensus 153 ~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L 229 (477)
T 2id5_A 153 SLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR-LYRLKVLEISHWPYLDTMTP-NCLYGLNLTSL 229 (477)
T ss_dssp TCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCS-CTTCCEEEEECCTTCCEECT-TTTTTCCCSEE
T ss_pred CCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhccc-CcccceeeCCCCccccccCc-ccccCccccEE
Confidence 7777777777765 445446778889999999999887554555666 89999999999987777776 45555689999
Q ss_pred EccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhhc
Q 045865 181 DMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRILH 223 (225)
Q Consensus 181 ~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~~ 223 (225)
++++|++ ...-+..+.. +++|+.|++++|.+++..+..|.
T Consensus 230 ~l~~n~l--~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~ 269 (477)
T 2id5_A 230 SITHCNL--TAVPYLAVRH-LVYLRFLNLSYNPISTIEGSMLH 269 (477)
T ss_dssp EEESSCC--CSCCHHHHTT-CTTCCEEECCSSCCCEECTTSCT
T ss_pred ECcCCcc--cccCHHHhcC-ccccCeeECCCCcCCccChhhcc
Confidence 9999965 3322356777 99999999999999987776553
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=9.1e-21 Score=150.59 Aligned_cols=190 Identities=15% Similarity=0.221 Sum_probs=122.5
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhH------------------HHHHhcCCCCCE
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEG------------------IERLSRLNNLKM 80 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~------------------~~~~~~l~~L~~ 80 (225)
...+++|++++|.+. .+.+..+.++++|++|++++|.+.. .|... ...+..+++|++
T Consensus 75 l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 149 (330)
T 1xku_A 75 LKNLHTLILINNKIS----KISPGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 149 (330)
T ss_dssp CTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSSCCSB-CCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCE
T ss_pred CCCCCEEECCCCcCC----eeCHHHhcCCCCCCEEECCCCcCCc-cChhhcccccEEECCCCcccccCHhHhcCCccccE
Confidence 357888899988887 5556677888888888888887764 33210 012344444444
Q ss_pred EECCCCCCCh--hhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEecc
Q 045865 81 LNLSGNSFNN--SILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMS 158 (225)
Q Consensus 81 L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 158 (225)
|++++|.+.. ..+..+..+++|++|++++|.+. .+|. .+ .++|+.|++++|.+.+..+..+.. +++|+.|+++
T Consensus 150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~-~~--~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls 224 (330)
T 1xku_A 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ-GL--PPSLTELHLDGNKITKVDAASLKG-LNNLAKLGLS 224 (330)
T ss_dssp EECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCS-SC--CTTCSEEECTTSCCCEECTGGGTT-CTTCCEEECC
T ss_pred EECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCc-cc--cccCCEEECCCCcCCccCHHHhcC-CCCCCEEECC
Confidence 4444444432 22334444455555555555443 2332 11 156667777777766544556666 8888888888
Q ss_pred ccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhhc
Q 045865 159 FCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRILH 223 (225)
Q Consensus 159 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~~ 223 (225)
+|.+++..+. .+..+++|+.|++++|++ ..+|..+.. +++|+.|++++|++++..+..|+
T Consensus 225 ~n~l~~~~~~-~~~~l~~L~~L~L~~N~l---~~lp~~l~~-l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 225 FNSISAVDNG-SLANTPHLRELHLNNNKL---VKVPGGLAD-HKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp SSCCCEECTT-TGGGSTTCCEEECCSSCC---SSCCTTTTT-CSSCCEEECCSSCCCCCCTTSSS
T ss_pred CCcCceeChh-hccCCCCCCEEECCCCcC---ccCChhhcc-CCCcCEEECCCCcCCccChhhcC
Confidence 8888755444 677888888899888866 356666777 88899999999998877766653
No 35
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=1.7e-21 Score=156.28 Aligned_cols=137 Identities=23% Similarity=0.269 Sum_probs=83.0
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhH-Hhhh
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSIL-SSLT 97 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~ 97 (225)
..+++.|++++|.+. .+.+..+.++++|++|++++|.+....+. .+..+++|++|++++|.+..... ..+.
T Consensus 75 l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 146 (353)
T 2z80_A 75 CVNLQALVLTSNGIN----TIEEDSFSSLGSLEHLDLSYNYLSNLSSS----WFKPLSSLTFLNLLGNPYKTLGETSLFS 146 (353)
T ss_dssp CTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCSSCCHH----HHTTCTTCSEEECTTCCCSSSCSSCSCT
T ss_pred CCCCCEEECCCCccC----ccCHhhcCCCCCCCEEECCCCcCCcCCHh----HhCCCccCCEEECCCCCCcccCchhhhc
Confidence 456778888888776 45566677778888888888877764333 46777888888888777765333 3566
Q ss_pred cCCCCCEEEcCCCCCCCccchhhhccC------------------------CCCceeecCCCCCcHHHHHHHHhhCCCCC
Q 045865 98 HLSSLRSLNLLWNRLEGSIDVKELHNF------------------------TNLEYLTLESSSLHISLLQSIASIFPSLK 153 (225)
Q Consensus 98 ~l~~L~~L~l~~n~~~~~~~~~~~~~l------------------------~~L~~l~l~~~~~~~~~~~~~~~~~~~L~ 153 (225)
.+++|++|++++|.....++...+..+ ++|+.|++++|.+.. .+..+...+++|+
T Consensus 147 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~ 225 (353)
T 2z80_A 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVE 225 (353)
T ss_dssp TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEE
T ss_pred cCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc-chhhhhhhccccc
Confidence 667777777776632223332244444 445555555555432 2322222266666
Q ss_pred EEecccccccc
Q 045865 154 NLSMSFCEVNG 164 (225)
Q Consensus 154 ~L~l~~n~~~~ 164 (225)
.|++++|.+++
T Consensus 226 ~L~L~~n~l~~ 236 (353)
T 2z80_A 226 CLELRDTDLDT 236 (353)
T ss_dssp EEEEESCBCTT
T ss_pred EEECCCCcccc
Confidence 66666666653
No 36
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=4.6e-21 Score=163.78 Aligned_cols=67 Identities=22% Similarity=0.480 Sum_probs=30.7
Q ss_pred CCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccch
Q 045865 149 FPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSR 220 (225)
Q Consensus 149 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~ 220 (225)
+++|+.|++++|.+++..+. .+.++++|+.|++++|+ +.+..|..+.. ++.| .|++++|++++.+|.
T Consensus 475 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~--l~~~~~~~l~~-l~~L-~L~L~~N~l~~~~~~ 541 (606)
T 3t6q_A 475 LGRLEILVLSFCDLSSIDQH-AFTSLKMMNHVDLSHNR--LTSSSIEALSH-LKGI-YLNLASNHISIILPS 541 (606)
T ss_dssp CTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSC--CCGGGGGGGTT-CCSC-EEECCSSCCCCCCGG
T ss_pred CCCccEEECCCCccCccChh-hhccccCCCEEECCCCc--cCcCChhHhCc-cccc-EEECcCCcccccCHh
Confidence 44444444444444433233 44445555555555552 23333444444 5555 555555555544444
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=1.6e-20 Score=152.45 Aligned_cols=62 Identities=24% Similarity=0.368 Sum_probs=30.5
Q ss_pred CCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCC
Q 045865 149 FPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLG 215 (225)
Q Consensus 149 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~ 215 (225)
+++|+.|++++|.+++..+. .+..+++|+.|++++|++. .++..+.. +++|+.|++++|+++
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~---~~~~~~~~-l~~L~~L~L~~n~l~ 308 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLV---ALNLYGQP-IPTLKVLDLSHNHLL 308 (390)
T ss_dssp CTTCSEEECCSSCCCEEESG-GGTTCSSCCEEECCSSCCC---EEECSSSC-CTTCCEEECCSSCCC
T ss_pred CCCccEEECCCCcCCCcChh-HccccccCCEEECCCCcCc---ccCcccCC-CCCCCEEECCCCcce
Confidence 55666666666665544343 5555555555555555431 11222223 444555555555444
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=2.2e-20 Score=148.35 Aligned_cols=197 Identities=19% Similarity=0.259 Sum_probs=125.5
Q ss_pred cCCCceeecCC---------cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCC
Q 045865 8 CQWERVECSNT---------TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNL 78 (225)
Q Consensus 8 c~~~~~~~~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L 78 (225)
|.+..+.|... ...++.|++++|.+. .+++..+.++++|++|++++|.+....+. .+..+++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L 102 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT----EIKDGDFKNLKNLHTLILINNKISKISPG----AFAPLVKL 102 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSSCCCCBCTT----TTTTCTTC
T ss_pred CCCeEEEecCCCccccCccCCCCCeEEECCCCcCC----EeChhhhccCCCCCEEECCCCcCCeeCHH----HhcCCCCC
Confidence 45555666531 357889999999987 56777889999999999999999886676 58899999
Q ss_pred CEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcH--HHHHHHHhhCCCCC---
Q 045865 79 KMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHI--SLLQSIASIFPSLK--- 153 (225)
Q Consensus 79 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~L~--- 153 (225)
++|++++|.++. .|..+. ++|++|++++|.+. .++...+..+++|+.|++++|.+.. ..+..+.. +++|+
T Consensus 103 ~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~L~~L~ 177 (330)
T 1xku_A 103 ERLYLSKNQLKE-LPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG-MKKLSYIR 177 (330)
T ss_dssp CEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG-CTTCCEEE
T ss_pred CEEECCCCcCCc-cChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccC-CCCcCEEE
Confidence 999999988764 222221 45666666666655 3333345555566666666555532 12233333 44444
Q ss_pred ------------------EEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCC
Q 045865 154 ------------------NLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLG 215 (225)
Q Consensus 154 ------------------~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~ 215 (225)
.|++++|.+++..+. .+..+++|+.|++++|++ .+..+..+.. +++|+.|++++|+++
T Consensus 178 l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~-l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 178 IADTNITTIPQGLPPSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSI--SAVDNGSLAN-TPHLRELHLNNNKLV 253 (330)
T ss_dssp CCSSCCCSCCSSCCTTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCC--CEECTTTGGG-STTCCEEECCSSCCS
T ss_pred CCCCccccCCccccccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcC--ceeChhhccC-CCCCCEEECCCCcCc
Confidence 455555555433333 566667777777777744 2222334555 777777777777777
Q ss_pred Cccchhh
Q 045865 216 TNSSRIL 222 (225)
Q Consensus 216 ~~~~~~~ 222 (225)
.+|..+
T Consensus 254 -~lp~~l 259 (330)
T 1xku_A 254 -KVPGGL 259 (330)
T ss_dssp -SCCTTT
T ss_pred -cCChhh
Confidence 444443
No 39
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=1.4e-20 Score=160.82 Aligned_cols=186 Identities=27% Similarity=0.328 Sum_probs=114.3
Q ss_pred ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865 21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 100 (225)
Q Consensus 21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~ 100 (225)
.++.+++++|.+. .+++..|..+++|++|++++|.+.. .|. .+..+++|++|++++|.+....+..+..++
T Consensus 255 ~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~-lp~----~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 325 (606)
T 3t6q_A 255 SVESINLQKHYFF----NISSNTFHCFSGLQELDLTATHLSE-LPS----GLVGLSTLKKLVLSANKFENLCQISASNFP 325 (606)
T ss_dssp EEEEEECTTCCCS----SCCTTTTTTCTTCSEEECTTSCCSC-CCS----SCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred ceeEEEeecCccC----ccCHHHhccccCCCEEeccCCccCC-CCh----hhcccccCCEEECccCCcCcCchhhhhccC
Confidence 6788888888876 5666777888888888888888775 555 467788888888888888776677777777
Q ss_pred CCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHH--HHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865 101 SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISL--LQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE 178 (225)
Q Consensus 101 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 178 (225)
+|++|++++|.+...++...+..+++|+.|++++|.+.+.. +..+.. +++|+.|++++|.+.+..+. .+.++++|+
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~ 403 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN-LSHLQSLNLSYNEPLSLKTE-AFKECPQLE 403 (606)
T ss_dssp TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTT-CTTCCEEECCSCSCEEECTT-TTTTCTTCS
T ss_pred cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhccc-CCCCCEEECCCCcCCcCCHH-HhcCCccCC
Confidence 77777777777654555434566666666666666655332 333444 55666666666655533333 455555555
Q ss_pred EEEccCCccccchhHHH-HHhhcCCCCcEEEccCCcCCCccch
Q 045865 179 HFDMRFARIALNTSFLQ-IIGESMPSLKYLLLSYSTLGTNSSR 220 (225)
Q Consensus 179 ~l~l~~n~i~~~~~~~~-~l~~~~~~L~~L~l~~n~l~~~~~~ 220 (225)
.+++++|++ .+..+. .+.. +++|+.|++++|.+++..|.
T Consensus 404 ~L~l~~n~l--~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~ 443 (606)
T 3t6q_A 404 LLDLAFTRL--KVKDAQSPFQN-LHLLKVLNLSHSLLDISSEQ 443 (606)
T ss_dssp EEECTTCCE--ECCTTCCTTTT-CTTCCEEECTTCCCBTTCTT
T ss_pred eEECCCCcC--CCcccchhhhC-cccCCEEECCCCccCCcCHH
Confidence 555555532 111111 1333 44444444444444444443
No 40
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=7.3e-20 Score=148.40 Aligned_cols=196 Identities=18% Similarity=0.271 Sum_probs=138.2
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcC---------CCCCEEECCCCCCC
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRL---------NNLKMLNLSGNSFN 89 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l---------~~L~~L~l~~~~l~ 89 (225)
..+++.|++++|.+...+....+..+..+++|++|++++|.+....+......+..+ ++|++|++++|.++
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 357778888888777544445555667788888888888877643333222234444 78888888888886
Q ss_pred -hhhH---HhhhcCCCCCEEEcCCCCCCCc----cchhhhccCCCCceeecCCCCCc----HHHHHHHHhhCCCCCEEec
Q 045865 90 -NSIL---SSLTHLSSLRSLNLLWNRLEGS----IDVKELHNFTNLEYLTLESSSLH----ISLLQSIASIFPSLKNLSM 157 (225)
Q Consensus 90 -~~~~---~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~l~l~~~~~~----~~~~~~~~~~~~~L~~L~l 157 (225)
...+ ..+..+++|++|++++|.+... +....+..+++|+.|++++|.+. ..++..+.. +++|+.|++
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~-~~~L~~L~L 251 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS-WPNLRELGL 251 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG-CTTCCEEEC
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc-CCCcCEEEC
Confidence 2233 4566778888888888877621 11115667788999999998886 345666666 889999999
Q ss_pred cccccccc----cccCCC--CCCCCCcEEEccCCccccch----hHHHHH-hhcCCCCcEEEccCCcCCCccc
Q 045865 158 SFCEVNGV----VRGQGF--PHFKSLEHFDMRFARIALNT----SFLQII-GESMPSLKYLLLSYSTLGTNSS 219 (225)
Q Consensus 158 ~~n~~~~~----~~~~~~--~~~~~L~~l~l~~n~i~~~~----~~~~~l-~~~~~~L~~L~l~~n~l~~~~~ 219 (225)
++|.+++. ++. .+ +.+++|+.|++++|++ .. .++..+ .. +++|+.|++++|++++..+
T Consensus 252 ~~n~i~~~~~~~l~~-~l~~~~~~~L~~L~L~~n~i--~~~g~~~l~~~l~~~-l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 252 NDCLLSARGAAAVVD-AFSKLENIGLQTLRLQYNEI--ELDAVRTLKTVIDEK-MPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TTCCCCHHHHHHHHH-HHHTCSSCCCCEEECCSSCC--BHHHHHHHHHHHHHH-CTTCCEEECTTSBSCTTSH
T ss_pred CCCCCchhhHHHHHH-HHhhccCCCeEEEECcCCcC--CHHHHHHHHHHHHhc-CCCceEEEccCCcCCcchh
Confidence 99988754 233 34 4488899999999955 34 477777 55 8999999999999998774
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=2.3e-21 Score=154.08 Aligned_cols=180 Identities=19% Similarity=0.222 Sum_probs=142.9
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHh---------cCCCCCEEECCCCCCCh
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLS---------RLNNLKMLNLSGNSFNN 90 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~---------~l~~L~~L~l~~~~l~~ 90 (225)
.+++.|++++|.+. .+ +..+.++++|++|++++|.+.+..|. .+. .+++|++|++++|.++
T Consensus 127 ~~L~~L~Ls~n~l~----~l-p~~l~~l~~L~~L~L~~n~~~~~~p~----~~~~~~~~~~~~~l~~L~~L~L~~n~l~- 196 (328)
T 4fcg_A 127 AGLETLTLARNPLR----AL-PASIASLNRLRELSIRACPELTELPE----PLASTDASGEHQGLVNLQSLRLEWTGIR- 196 (328)
T ss_dssp TTCSEEEEESCCCC----CC-CGGGGGCTTCCEEEEEEETTCCCCCS----CSEEEC-CCCEEESTTCCEEEEEEECCC-
T ss_pred CCCCEEECCCCccc----cC-cHHHhcCcCCCEEECCCCCCccccCh----hHhhccchhhhccCCCCCEEECcCCCcC-
Confidence 45666666666654 23 23456667777777776655554554 232 3777777777777777
Q ss_pred hhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCC
Q 045865 91 SILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQG 170 (225)
Q Consensus 91 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 170 (225)
.+|..+..+++|++|++++|.+. .++. .+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+.+..|. .
T Consensus 197 ~lp~~l~~l~~L~~L~L~~N~l~-~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~~~~p~-~ 272 (328)
T 4fcg_A 197 SLPASIANLQNLKSLKIRNSPLS-ALGP-AIHHLPKLEELDLRGCTALRNYPPIFGG-RAPLKRLILKDCSNLLTLPL-D 272 (328)
T ss_dssp CCCGGGGGCTTCCEEEEESSCCC-CCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTC-CCCCCEEECTTCTTCCBCCT-T
T ss_pred cchHhhcCCCCCCEEEccCCCCC-cCch-hhccCCCCCEEECcCCcchhhhHHHhcC-CCCCCEEECCCCCchhhcch-h
Confidence 46777889999999999999998 5666 7889999999999999888777777777 99999999999998888887 7
Q ss_pred CCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCC
Q 045865 171 FPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGT 216 (225)
Q Consensus 171 ~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~ 216 (225)
+.++++|+.|++++| ...+.+|..+++ +++|+.+++..+.+..
T Consensus 273 ~~~l~~L~~L~L~~n--~~~~~iP~~l~~-L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 273 IHRLTQLEKLDLRGC--VNLSRLPSLIAQ-LPANCIILVPPHLQAQ 315 (328)
T ss_dssp GGGCTTCCEEECTTC--TTCCCCCGGGGG-SCTTCEEECCGGGSCC
T ss_pred hhcCCCCCEEeCCCC--CchhhccHHHhh-ccCceEEeCCHHHHHH
Confidence 899999999999999 556788999999 9999999999887764
No 42
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=1.4e-21 Score=148.45 Aligned_cols=186 Identities=11% Similarity=0.157 Sum_probs=152.8
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCc-ccCcchhhHHHHHhcCCCCCEEECCC-CCCChhhHHhh
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNK-IAGCVENEGIERLSRLNNLKMLNLSG-NSFNNSILSSL 96 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~l 96 (225)
+..++.|++++|++. .+++..|..+++|++|++++|. +....+. .|..+++|++|++++ |.++...+..+
T Consensus 30 ~~~l~~L~l~~n~l~----~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 30 PPSTQTLKLIETHLR----TIPSHAFSNLPNISRIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp CTTCCEEEEESCCCS----EECTTTTTTCTTCCEEEEECCSSCCEECTT----TEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred CCcccEEEEeCCcce----EECHHHccCCCCCcEEeCCCCCCcceeCHh----HcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 457899999999998 6777789999999999999997 8775444 588999999999998 99988777788
Q ss_pred hcCCCCCEEEcCCCCCCCccchhhhccCCCCc---eeecCCC-CCcHHHHHHHHhhCCCCC-EEeccccccccccccCCC
Q 045865 97 THLSSLRSLNLLWNRLEGSIDVKELHNFTNLE---YLTLESS-SLHISLLQSIASIFPSLK-NLSMSFCEVNGVVRGQGF 171 (225)
Q Consensus 97 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~---~l~l~~~-~~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~ 171 (225)
..+++|++|++++|.+. .+| .+..+.+|+ .|++++| .+....+..+.. +++|+ .|++++|.++ .++...+
T Consensus 102 ~~l~~L~~L~l~~n~l~-~lp--~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~-l~~L~~~L~l~~n~l~-~i~~~~~ 176 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLK-MFP--DLTKVYSTDIFFILEITDNPYMTSIPVNAFQG-LCNETLTLKLYNNGFT-SVQGYAF 176 (239)
T ss_dssp ECCTTCCEEEEEEECCC-SCC--CCTTCCBCCSEEEEEEESCTTCCEECTTTTTT-TBSSEEEEECCSCCCC-EECTTTT
T ss_pred CCCCCCCEEeCCCCCCc-ccc--ccccccccccccEEECCCCcchhhcCcccccc-hhcceeEEEcCCCCCc-ccCHhhc
Confidence 89999999999999987 465 377777787 9999999 887544445666 89999 9999999998 6666456
Q ss_pred CCCCCCcEEEccCCc-cccchhH-HHHHhhcC-CCCcEEEccCCcCCCccchhh
Q 045865 172 PHFKSLEHFDMRFAR-IALNTSF-LQIIGESM-PSLKYLLLSYSTLGTNSSRIL 222 (225)
Q Consensus 172 ~~~~~L~~l~l~~n~-i~~~~~~-~~~l~~~~-~~L~~L~l~~n~l~~~~~~~~ 222 (225)
.. ++|+.+++++|+ +. .+ +..+.. + ++|+.|++++|++++.++..|
T Consensus 177 ~~-~~L~~L~L~~n~~l~---~i~~~~~~~-l~~~L~~L~l~~N~l~~l~~~~~ 225 (239)
T 2xwt_C 177 NG-TKLDAVYLNKNKYLT---VIDKDAFGG-VYSGPSLLDVSQTSVTALPSKGL 225 (239)
T ss_dssp TT-CEEEEEECTTCTTCC---EECTTTTTT-CSBCCSEEECTTCCCCCCCCTTC
T ss_pred CC-CCCCEEEcCCCCCcc---cCCHHHhhc-cccCCcEEECCCCccccCChhHh
Confidence 66 899999999994 52 33 345666 8 999999999999997665544
No 43
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=148.66 Aligned_cols=185 Identities=19% Similarity=0.142 Sum_probs=140.4
Q ss_pred ceEEeeccccccccchhHHhhhhh--cCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865 21 RVIALDLSYIYSGEYSWYLNASLF--TPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98 (225)
Q Consensus 21 ~v~~l~l~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~ 98 (225)
++++|++++|.+. ...+..+ ..+++|++|++++|.+....+......+..+++|++|++++|.+....+..+..
T Consensus 92 ~L~~L~l~~n~l~----~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 92 RLKELTLEDLKIT----GTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp CCCEEEEESCCCB----SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred ceeEEEeeCCEec----cchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 4888899998876 3344444 788999999999999886544222124567999999999999998877888889
Q ss_pred CCCCCEEEcCCCCCCCc--cch-hhhccCCCCceeecCCCCCcH--HHHHH-HHhhCCCCCEEeccccccccccccCCCC
Q 045865 99 LSSLRSLNLLWNRLEGS--IDV-KELHNFTNLEYLTLESSSLHI--SLLQS-IASIFPSLKNLSMSFCEVNGVVRGQGFP 172 (225)
Q Consensus 99 l~~L~~L~l~~n~~~~~--~~~-~~~~~l~~L~~l~l~~~~~~~--~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 172 (225)
+++|++|++++|.+.+. ++. ..+..+++|++|++++|.+.. ..+.. +.. +++|++|++++|.+++..|. .+.
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~-l~~L~~L~Ls~N~l~~~~p~-~~~ 245 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA-GVQPHSLDLSHNSLRATVNP-SAP 245 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH-TCCCSSEECTTSCCCCCCCS-CCS
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc-CCCCCEEECCCCCCCccchh-hHH
Confidence 99999999999987532 221 123578899999999999872 22233 345 89999999999999876565 555
Q ss_pred CC---CCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCc
Q 045865 173 HF---KSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTN 217 (225)
Q Consensus 173 ~~---~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~ 217 (225)
.+ ++|++|++++|++. .+|..+ .++|+.|++++|+|++.
T Consensus 246 ~~~~~~~L~~L~Ls~N~l~---~lp~~~---~~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 246 RCMWSSALNSLNLSFAGLE---QVPKGL---PAKLRVLDLSSNRLNRA 287 (310)
T ss_dssp SCCCCTTCCCEECCSSCCC---SCCSCC---CSCCSCEECCSCCCCSC
T ss_pred hccCcCcCCEEECCCCCCC---chhhhh---cCCCCEEECCCCcCCCC
Confidence 55 69999999999663 555544 46899999999999873
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=3e-20 Score=158.72 Aligned_cols=108 Identities=20% Similarity=0.200 Sum_probs=57.6
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 99 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 99 (225)
..++.|++++|.+. .+++..|..+++|++|++++|.+....+. .|..+++|++|++++|.++...+..+..+
T Consensus 75 ~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 146 (597)
T 3oja_B 75 RQVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNT 146 (597)
T ss_dssp CCCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcEEECCCCCCC----CCChHHhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhccC
Confidence 35666666666665 44444556666666666666666554443 34555666666666665554434444555
Q ss_pred CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCC
Q 045865 100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSS 136 (225)
Q Consensus 100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~ 136 (225)
++|++|++++|.+.+..+ ..+..+++|+.|++++|.
T Consensus 147 ~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 147 PKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp TTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSC
T ss_pred CCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCC
Confidence 555555555555542222 234444444444444443
No 45
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=1.8e-20 Score=146.45 Aligned_cols=181 Identities=18% Similarity=0.189 Sum_probs=148.3
Q ss_pred CcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhh
Q 045865 18 TTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 97 (225)
Q Consensus 18 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~ 97 (225)
....+++++++++++. .++... .+.++.|++++|.+....+. .+..+++|++|++++|.++...+ ..
T Consensus 8 ~l~~l~~l~~~~~~l~----~ip~~~---~~~l~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~--~~ 74 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT----ALPPDL---PKDTTILHLSENLLYTFSLA----TLMPYTRLTQLNLDRAELTKLQV--DG 74 (290)
T ss_dssp CSTTCCEEECTTSCCS----SCCSCC---CTTCCEEECTTSCCSEEEGG----GGTTCTTCCEEECTTSCCCEEEC--CS
T ss_pred ccCCccEEECCCCCCC----cCCCCC---CCCCCEEEcCCCcCCccCHH----HhhcCCCCCEEECCCCccCcccC--CC
Confidence 3457899999999987 555433 26789999999999886665 68999999999999999987433 26
Q ss_pred cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCC
Q 045865 98 HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSL 177 (225)
Q Consensus 98 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 177 (225)
.+++|++|++++|.+. .+|. .+..+++|+.|++++|.+....+..+.. +++|+.|++++|.++...+. .|..+++|
T Consensus 75 ~l~~L~~L~Ls~N~l~-~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~-~~~~l~~L 150 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPG-LLTPTPKL 150 (290)
T ss_dssp CCTTCCEEECCSSCCS-SCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTT-CTTCCEEECTTSCCCCCCTT-TTTTCTTC
T ss_pred CCCcCCEEECCCCcCC-cCch-hhccCCCCCEEECCCCcCcccCHHHHcC-CCCCCEEECCCCCCCccChh-hcccccCC
Confidence 8899999999999997 6775 7788999999999999998554456666 99999999999999854444 88999999
Q ss_pred cEEEccCCccccchhHHH-HHhhcCCCCcEEEccCCcCCCccc
Q 045865 178 EHFDMRFARIALNTSFLQ-IIGESMPSLKYLLLSYSTLGTNSS 219 (225)
Q Consensus 178 ~~l~l~~n~i~~~~~~~~-~l~~~~~~L~~L~l~~n~l~~~~~ 219 (225)
+.|++++|++. .++. .+.. +++|+.|++++|+|+..++
T Consensus 151 ~~L~L~~N~l~---~l~~~~~~~-l~~L~~L~L~~N~l~~ip~ 189 (290)
T 1p9a_G 151 EKLSLANNNLT---ELPAGLLNG-LENLDTLLLQENSLYTIPK 189 (290)
T ss_dssp CEEECTTSCCS---CCCTTTTTT-CTTCCEEECCSSCCCCCCT
T ss_pred CEEECCCCcCC---ccCHHHhcC-cCCCCEEECCCCcCCccCh
Confidence 99999999663 3443 4566 9999999999999995443
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.7e-20 Score=160.21 Aligned_cols=134 Identities=20% Similarity=0.198 Sum_probs=90.9
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 99 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 99 (225)
..++.++++++.+. .+++..+..+++|++|++++|.+....+. .|..+++|++|++++|.+.+..+..+..+
T Consensus 51 ~~l~~l~l~~~~l~----~lp~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 51 NNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp CCCSEEEESSCEES----EECTHHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCceEEEeeCCCCC----CcCHHHHccCCCCcEEECCCCCCCCCChH----HhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 34566777777665 56666677777777777777777765444 46777777777777777777666666777
Q ss_pred CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccc
Q 045865 100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163 (225)
Q Consensus 100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 163 (225)
++|++|++++|.+. .+|...+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.++
T Consensus 123 ~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 123 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA-TTSLQNLQLSSNRLT 184 (597)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT-CTTCCEEECTTSCCS
T ss_pred CCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhc-CCcCcEEECcCCCCC
Confidence 77777777777776 555435567777777777777766544445555 666666666666554
No 47
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.2e-20 Score=140.44 Aligned_cols=160 Identities=23% Similarity=0.241 Sum_probs=119.3
Q ss_pred CCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCC
Q 045865 47 FQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTN 126 (225)
Q Consensus 47 l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 126 (225)
.+++++|++++|.+....+. .+..+++|++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~ 101 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNG----VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQ 101 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred CCCCcEEEcCCCccCcCChh----hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccC
Confidence 34678888888888764444 4677888888888888887765666777888888888888877 445435677888
Q ss_pred CceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcE
Q 045865 127 LEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKY 206 (225)
Q Consensus 127 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~ 206 (225)
|+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+. .+..+++|+.+++++|++ . +. +++|+.
T Consensus 102 L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~~--~-------~~-~~~l~~ 169 (208)
T 2o6s_A 102 LKELALNTNQLQSLPDGVFDK-LTQLKDLRLYQNQLKSVPDG-VFDRLTSLQYIWLHDNPW--D-------CT-CPGIRY 169 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSCCB--C-------CC-TTTTHH
T ss_pred CCEEEcCCCcCcccCHhHhcc-CCcCCEEECCCCccceeCHH-HhccCCCccEEEecCCCe--e-------cC-CCCHHH
Confidence 888888888877544444555 88888888888888744333 678888889999888854 2 23 777888
Q ss_pred EEccCCcCCCccchhhc
Q 045865 207 LLLSYSTLGTNSSRILH 223 (225)
Q Consensus 207 L~l~~n~l~~~~~~~~~ 223 (225)
|+++.|.++|.+|+.+.
T Consensus 170 L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 170 LSEWINKHSGVVRNSAG 186 (208)
T ss_dssp HHHHHHHCTTTBBCTTS
T ss_pred HHHHHHhCCceeeccCc
Confidence 88888888888887654
No 48
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=4.1e-21 Score=142.93 Aligned_cols=191 Identities=19% Similarity=0.199 Sum_probs=153.2
Q ss_pred ccCCCceeecCC---------cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCC
Q 045865 7 CCQWERVECSNT---------TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNN 77 (225)
Q Consensus 7 ~c~~~~~~~~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~ 77 (225)
.|.|.++.|... ..+++.|++++|++. .+++..+..+++|++|++++|.+....+. .+..+++
T Consensus 6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~ 77 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLK----SLPNGVFDELTSLTQLYLGGNKLQSLPNG----VFNKLTS 77 (208)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTT----TTTTCTT
T ss_pred EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccC----cCChhhhcccccCcEEECCCCccCccChh----hcCCCCC
Confidence 477888888753 346899999999997 66777889999999999999999875444 4788999
Q ss_pred CCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEec
Q 045865 78 LKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSM 157 (225)
Q Consensus 78 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l 157 (225)
|++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+.. +++|+.|++
T Consensus 78 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L~l 155 (208)
T 2o6s_A 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR-LTSLQYIWL 155 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT-CTTCCEEEC
T ss_pred cCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhcc-CCCccEEEe
Confidence 999999999999876777889999999999999998 555546888999999999999988544444666 899999999
Q ss_pred cccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865 158 SFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL 222 (225)
Q Consensus 158 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~ 222 (225)
++|.+. +.+++|+.++++.| ...+.+|..++. ++. ++..|...+..+..+
T Consensus 156 ~~N~~~--------~~~~~l~~L~~~~n--~~~g~ip~~~~~-l~~----~~~~C~~~~~~~~~~ 205 (208)
T 2o6s_A 156 HDNPWD--------CTCPGIRYLSEWIN--KHSGVVRNSAGS-VAP----DSAKCSGSGKPVRSI 205 (208)
T ss_dssp CSCCBC--------CCTTTTHHHHHHHH--HCTTTBBCTTSS-BCT----TCSBBTTTCCBGGGC
T ss_pred cCCCee--------cCCCCHHHHHHHHH--hCCceeeccCcc-ccC----CccccccCCCcceee
Confidence 999765 34567899999999 556777877766 554 556666665555543
No 49
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.82 E-value=8.7e-21 Score=162.07 Aligned_cols=163 Identities=22% Similarity=0.310 Sum_probs=79.8
Q ss_pred hcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCc-cchhhhc
Q 045865 44 FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGS-IDVKELH 122 (225)
Q Consensus 44 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~ 122 (225)
+..+++|++|++++|.+.+..+.. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+. .+.
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~ 470 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRVTEFS---AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN-VFA 470 (606)
T ss_dssp CTTCTTCCEEECTTSEEESTTTTT---TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-CCT
T ss_pred ccCCCCCCeeECCCCccCCccChh---hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH-hhc
Confidence 344444444444444444433211 244455555555555555444444455555555555555554432 222 444
Q ss_pred cCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCC
Q 045865 123 NFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMP 202 (225)
Q Consensus 123 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~ 202 (225)
.+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+. .+.++++|+.|++++|++ ..+|..+.. ++
T Consensus 471 ~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~N~l---~~~p~~~~~-l~ 544 (606)
T 3vq2_A 471 NTTNLTFLDLSKCQLEQISWGVFDT-LHRLQLLNMSHNNLLFLDSS-HYNQLYSLSTLDCSFNRI---ETSKGILQH-FP 544 (606)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCSCEEGG-GTTTCTTCCEEECTTSCC---CCEESCGGG-SC
T ss_pred cCCCCCEEECCCCcCCccChhhhcc-cccCCEEECCCCcCCCcCHH-HccCCCcCCEEECCCCcC---cccCHhHhh-hc
Confidence 5555555555555554433344444 55555555555555544444 555555555555555543 133333444 44
Q ss_pred -CCcEEEccCCcCCC
Q 045865 203 -SLKYLLLSYSTLGT 216 (225)
Q Consensus 203 -~L~~L~l~~n~l~~ 216 (225)
+|+.|++++|++..
T Consensus 545 ~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 545 KSLAFFNLTNNSVAC 559 (606)
T ss_dssp TTCCEEECCSCCCCC
T ss_pred ccCcEEEccCCCccc
Confidence 35555555555554
No 50
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=3e-19 Score=141.97 Aligned_cols=185 Identities=24% Similarity=0.310 Sum_probs=136.3
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCC-CCChh-hHHhhh
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGN-SFNNS-ILSSLT 97 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~-~~~~l~ 97 (225)
.+++.|++++|.+.. ...+..+..+++|++|++++|.+....+. .+..+++|++|++++| .+++. .+..+.
T Consensus 93 ~~L~~L~L~~~~l~~---~~~~~~~~~~~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~L~~~~~l~~~~l~~~~~ 165 (336)
T 2ast_B 93 FRVQHMDLSNSVIEV---STLHGILSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEFALQTLLS 165 (336)
T ss_dssp BCCCEEECTTCEECH---HHHHHHHTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred CCCCEEEccCCCcCH---HHHHHHHhhCCCCCEEeCcCcccCHHHHH----HHhcCCCCCEEECCCCCCCCHHHHHHHHh
Confidence 577888888887753 22445677888899999998887654554 5778899999999988 67753 566677
Q ss_pred cCCCCCEEEcCCC-CCCCc-cchhhhccCC-CCceeecCCC--CCc-HHHHHHHHhhCCCCCEEeccccc-cccccccCC
Q 045865 98 HLSSLRSLNLLWN-RLEGS-IDVKELHNFT-NLEYLTLESS--SLH-ISLLQSIASIFPSLKNLSMSFCE-VNGVVRGQG 170 (225)
Q Consensus 98 ~l~~L~~L~l~~n-~~~~~-~~~~~~~~l~-~L~~l~l~~~--~~~-~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~ 170 (225)
.+++|++|++++| .+.+. ++. .+..++ +|+.|++++| .++ ..++..+.. +++|+.|++++|. +++..+. .
T Consensus 166 ~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~-~ 242 (336)
T 2ast_B 166 SCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLVRR-CPNLVHLDLSDSVMLKNDCFQ-E 242 (336)
T ss_dssp HCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH-CTTCSEEECTTCTTCCGGGGG-G
T ss_pred cCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeCCCcccCCHHHHHHHHhh-CCCCCEEeCCCCCcCCHHHHH-H
Confidence 8889999999988 77633 333 677788 8999999888 455 344555666 8999999999988 6655555 6
Q ss_pred CCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCc
Q 045865 171 FPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTN 217 (225)
Q Consensus 171 ~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~ 217 (225)
+.++++|+.|++++|. .........+++ +++|+.|++++| ++..
T Consensus 243 l~~l~~L~~L~l~~~~-~~~~~~~~~l~~-~~~L~~L~l~~~-i~~~ 286 (336)
T 2ast_B 243 FFQLNYLQHLSLSRCY-DIIPETLLELGE-IPTLKTLQVFGI-VPDG 286 (336)
T ss_dssp GGGCTTCCEEECTTCT-TCCGGGGGGGGG-CTTCCEEECTTS-SCTT
T ss_pred HhCCCCCCEeeCCCCC-CCCHHHHHHHhc-CCCCCEEeccCc-cCHH
Confidence 7788889999999884 223333345677 888888888888 5543
No 51
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=2.6e-19 Score=144.01 Aligned_cols=202 Identities=23% Similarity=0.250 Sum_probs=148.3
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCC-CccEEEccCCcccCcchhhHHHHHhcC-CCCCEEECCCCCCChhhHHh-
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQ-QLESLDLTQNKIAGCVENEGIERLSRL-NNLKMLNLSGNSFNNSILSS- 95 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~~~~~~~- 95 (225)
...+++|++++|.+...........+..++ +|++|++++|.+....+......+... ++|++|++++|.++...+..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 456999999999988543333447788888 899999999999886666433344444 99999999999997655554
Q ss_pred ---hhcC-CCCCEEEcCCCCCCCccchhhh----cc-CCCCceeecCCCCCcH----HHHHHHHhhCC-CCCEEeccccc
Q 045865 96 ---LTHL-SSLRSLNLLWNRLEGSIDVKEL----HN-FTNLEYLTLESSSLHI----SLLQSIASIFP-SLKNLSMSFCE 161 (225)
Q Consensus 96 ---l~~l-~~L~~L~l~~n~~~~~~~~~~~----~~-l~~L~~l~l~~~~~~~----~~~~~~~~~~~-~L~~L~l~~n~ 161 (225)
+..+ ++|++|++++|.+. ..+...+ .. ..+|+.|++++|.+.+ .++..+.. ++ +|+.|++++|.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~-~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFS-SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAA-IPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGG-GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHT-SCTTCCEEECTTSC
T ss_pred HHHHHhCCCCccEEECcCCcCC-cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhc-CCccccEeeecCCC
Confidence 4444 89999999999987 3333233 33 3589999999999874 34455555 55 99999999999
Q ss_pred ccccccc---CCCCCC-CCCcEEEccCCccccc--hhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865 162 VNGVVRG---QGFPHF-KSLEHFDMRFARIALN--TSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL 222 (225)
Q Consensus 162 ~~~~~~~---~~~~~~-~~L~~l~l~~n~i~~~--~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~ 222 (225)
+++..+. ..+..+ ++|+.|++++|++... ..++..+....++|+.|++++|.+++..++.+
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 245 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL 245 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHH
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHH
Confidence 8755442 123345 5899999999976332 13677777624599999999999998776443
No 52
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=8.9e-21 Score=162.03 Aligned_cols=189 Identities=20% Similarity=0.188 Sum_probs=133.9
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhH-Hhhhc
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSIL-SSLTH 98 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~ 98 (225)
..++.|++++|.+... ...+..+..++.|++|++++|.+.. .+. .+..+++|++|++++|.+.+..+ ..+..
T Consensus 350 ~~L~~L~ls~n~l~~~--~~~~~~~~~~~~L~~L~L~~n~l~~-~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 422 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFS--GCCSYSDLGTNSLRHLDLSFNGAII-MSA----NFMGLEELQHLDFQHSTLKRVTEFSAFLS 422 (606)
T ss_dssp TTCCEEECCSSCEEEE--EECCHHHHCCSCCCEEECCSCSEEE-ECC----CCTTCTTCCEEECTTSEEESTTTTTTTTT
T ss_pred CCCCEEECcCCccCCC--cchhhhhccCCcccEeECCCCcccc-chh----hccCCCCCCeeECCCCccCCccChhhhhc
Confidence 4566777777766521 1113455667777777777777665 333 46777888888888887766555 56777
Q ss_pred CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHH-HHHHHHhhCCCCCEEeccccccccccccCCCCCCCCC
Q 045865 99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHIS-LLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSL 177 (225)
Q Consensus 99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 177 (225)
+++|++|++++|.+....+. .+..+++|+.|++++|.+.+. .+..+.. +++|+.|++++|.+++..+. .+.++++|
T Consensus 423 l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L 499 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDFDG-IFLGLTSLNTLKMAGNSFKDNTLSNVFAN-TTNLTFLDLSKCQLEQISWG-VFDTLHRL 499 (606)
T ss_dssp CTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTT-CTTCCEEECTTSCCCEECTT-TTTTCTTC
T ss_pred cccCCEEECcCCCCCccchh-hhcCCCCCCEEECCCCcCCCcchHHhhcc-CCCCCEEECCCCcCCccChh-hhcccccC
Confidence 88888888888887644444 677788888888888887653 4555566 78888888888888765555 78888888
Q ss_pred cEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865 178 EHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL 222 (225)
Q Consensus 178 ~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~ 222 (225)
+.|++++|++ .+..|..+.. +++|+.|++++|+++ .+|..+
T Consensus 500 ~~L~Ls~N~l--~~~~~~~~~~-l~~L~~L~l~~N~l~-~~p~~~ 540 (606)
T 3vq2_A 500 QLLNMSHNNL--LFLDSSHYNQ-LYSLSTLDCSFNRIE-TSKGIL 540 (606)
T ss_dssp CEEECCSSCC--SCEEGGGTTT-CTTCCEEECTTSCCC-CEESCG
T ss_pred CEEECCCCcC--CCcCHHHccC-CCcCCEEECCCCcCc-ccCHhH
Confidence 8888888844 4445667777 888888888888888 444433
No 53
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=1e-20 Score=149.33 Aligned_cols=181 Identities=20% Similarity=0.221 Sum_probs=143.6
Q ss_pred CcCceEEeeccccccccchhHHhhhhhcCC-----CCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChh-
Q 045865 18 TTGRVIALDLSYIYSGEYSWYLNASLFTPF-----QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNS- 91 (225)
Q Consensus 18 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~- 91 (225)
....++.|++++|++.. + +..+..+ ++|++|++++|.+.+..+. .+..+++|++|++++|.+.+.
T Consensus 119 ~l~~L~~L~Ls~N~l~~----~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~ 189 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWAT----R-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE----QVRVFPALSTLDLSDNPELGER 189 (312)
T ss_dssp CSCCCSEEEEESCBCSS----S-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT----TCCCCSSCCEEECCSCTTCHHH
T ss_pred cCCCccEEEccCCCCcc----h-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH----HhccCCCCCEEECCCCCcCcch
Confidence 35689999999999974 3 3344444 8999999999999986656 588999999999999998764
Q ss_pred -hHHhh--hcCCCCCEEEcCCCCCCC--ccchhhhccCCCCceeecCCCCCcHHHH-HHHHhhCCCCCEEeccccccccc
Q 045865 92 -ILSSL--THLSSLRSLNLLWNRLEG--SIDVKELHNFTNLEYLTLESSSLHISLL-QSIASIFPSLKNLSMSFCEVNGV 165 (225)
Q Consensus 92 -~~~~l--~~l~~L~~L~l~~n~~~~--~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~ 165 (225)
.+..+ ..+++|++|++++|.+.. ..+...+..+++|+.|++++|.+.+..+ ..+.. +++|+.|++++|.++ .
T Consensus 190 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-l~~L~~L~Ls~N~l~-~ 267 (312)
T 1wwl_A 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW-PSQLNSLNLSFTGLK-Q 267 (312)
T ss_dssp HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC-CTTCCEEECTTSCCS-S
T ss_pred HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh-cCCCCEEECCCCccC-h
Confidence 34444 789999999999999872 2222244577899999999999886543 23334 789999999999998 6
Q ss_pred cccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCc
Q 045865 166 VRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTN 217 (225)
Q Consensus 166 ~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~ 217 (225)
+|. .+. ++|+.|++++|++.. +|. +.. +++|+.|++++|++++.
T Consensus 268 ip~-~~~--~~L~~L~Ls~N~l~~---~p~-~~~-l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 268 VPK-GLP--AKLSVLDLSYNRLDR---NPS-PDE-LPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCS-SCC--SEEEEEECCSSCCCS---CCC-TTT-SCEEEEEECTTCTTTCC
T ss_pred hhh-hcc--CCceEEECCCCCCCC---Chh-Hhh-CCCCCEEeccCCCCCCC
Confidence 666 444 899999999997632 254 777 99999999999999864
No 54
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=2.6e-19 Score=141.01 Aligned_cols=169 Identities=20% Similarity=0.315 Sum_probs=95.4
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 99 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 99 (225)
.+++.|++++|.+. .+++ +..+++|++|++++|.+.. .+ .+..+++|++|++++|.+.... .+..+
T Consensus 63 ~~L~~L~L~~n~i~----~~~~--~~~l~~L~~L~L~~n~l~~-~~-----~~~~l~~L~~L~l~~n~l~~~~--~l~~l 128 (308)
T 1h6u_A 63 NNLIGLELKDNQIT----DLAP--LKNLTKITELELSGNPLKN-VS-----AIAGLQSIKTLDLTSTQITDVT--PLAGL 128 (308)
T ss_dssp TTCCEEECCSSCCC----CCGG--GTTCCSCCEEECCSCCCSC-CG-----GGTTCTTCCEEECTTSCCCCCG--GGTTC
T ss_pred CCCCEEEccCCcCC----CChh--HccCCCCCEEEccCCcCCC-ch-----hhcCCCCCCEEECCCCCCCCch--hhcCC
Confidence 45566666666554 2232 5556666666666666554 22 2556666666666666665532 25566
Q ss_pred CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcE
Q 045865 100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEH 179 (225)
Q Consensus 100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 179 (225)
++|++|++++|.+. .++ .+..+++|+.|++++|.+.+..+ +.. +++|+.|++++|.+++. +. +..+++|+.
T Consensus 129 ~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~-l~~L~~L~l~~n~l~~~-~~--l~~l~~L~~ 199 (308)
T 1h6u_A 129 SNLQVLYLDLNQIT-NIS--PLAGLTNLQYLSIGNAQVSDLTP--LAN-LSKLTTLKADDNKISDI-SP--LASLPNLIE 199 (308)
T ss_dssp TTCCEEECCSSCCC-CCG--GGGGCTTCCEEECCSSCCCCCGG--GTT-CTTCCEEECCSSCCCCC-GG--GGGCTTCCE
T ss_pred CCCCEEECCCCccC-cCc--cccCCCCccEEEccCCcCCCChh--hcC-CCCCCEEECCCCccCcC-hh--hcCCCCCCE
Confidence 66666666666655 333 25556666666666666553222 444 66666666666666532 21 455666666
Q ss_pred EEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCC
Q 045865 180 FDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGT 216 (225)
Q Consensus 180 l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~ 216 (225)
|++++|++... + .+.. +++|+.|++++|++++
T Consensus 200 L~L~~N~l~~~---~-~l~~-l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 200 VHLKNNQISDV---S-PLAN-TSNLFIVTLTNQTITN 231 (308)
T ss_dssp EECTTSCCCBC---G-GGTT-CTTCCEEEEEEEEEEC
T ss_pred EEccCCccCcc---c-cccC-CCCCCEEEccCCeeec
Confidence 66666654222 1 2455 6666666666666654
No 55
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=3.2e-19 Score=144.64 Aligned_cols=196 Identities=17% Similarity=0.180 Sum_probs=129.0
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCccc---CcchhhH---HHHHhcCCCCCEEECCCCCCCh--
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIA---GCVENEG---IERLSRLNNLKMLNLSGNSFNN-- 90 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~---~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~-- 90 (225)
...++.|++++|++........+..+..+++|++|++++|.+. +..|... ...+..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 3568889999888875433334455778888888888886543 2233321 2234678888888888888876
Q ss_pred --hhHHhhhcCCCCCEEEcCCCCCCCccch---hhhccC---------CCCceeecCCCCCcH-HHH---HHHHhhCCCC
Q 045865 91 --SILSSLTHLSSLRSLNLLWNRLEGSIDV---KELHNF---------TNLEYLTLESSSLHI-SLL---QSIASIFPSL 152 (225)
Q Consensus 91 --~~~~~l~~l~~L~~L~l~~n~~~~~~~~---~~~~~l---------~~L~~l~l~~~~~~~-~~~---~~~~~~~~~L 152 (225)
.++..+..+++|++|++++|.+....+. ..+..+ ++|+.|++++|.+.. ..+ ..+.. +++|
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L 189 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS-HRLL 189 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh-CCCc
Confidence 4666777888888888888877522111 022223 678888888887762 222 34555 7788
Q ss_pred CEEecccccccc-----ccccCCCCCCCCCcEEEccCCccccc--hhHHHHHhhcCCCCcEEEccCCcCCCc
Q 045865 153 KNLSMSFCEVNG-----VVRGQGFPHFKSLEHFDMRFARIALN--TSFLQIIGESMPSLKYLLLSYSTLGTN 217 (225)
Q Consensus 153 ~~L~l~~n~~~~-----~~~~~~~~~~~~L~~l~l~~n~i~~~--~~~~~~l~~~~~~L~~L~l~~n~l~~~ 217 (225)
+.|++++|.++. ..+. .+.++++|+.|++++|.+... ..++..+.. +++|+.|++++|.+++.
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~-~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~-~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLE-GLAYCQELKVLDLQDNTFTHLGSSALAIALKS-WPNLRELGLNDCLLSAR 259 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHT-TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG-CTTCCEEECTTCCCCHH
T ss_pred CEEECcCCCCCHhHHHHHHHH-HhhcCCCccEEECcCCCCCcHHHHHHHHHHcc-CCCcCEEECCCCCCchh
Confidence 888888887762 1222 566777788888888744211 445666676 77777777777777765
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=9.2e-21 Score=167.71 Aligned_cols=200 Identities=20% Similarity=0.213 Sum_probs=160.7
Q ss_pred CCCceeecCCcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcc-hhhHHHHHhcCCCCCEEECCCCC
Q 045865 9 QWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCV-ENEGIERLSRLNNLKMLNLSGNS 87 (225)
Q Consensus 9 ~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~~~~~l~~L~~L~l~~~~ 87 (225)
++..+.. .+..++.|++++|.+. .+.+..|.++++|++|++++|.+...+ +. .|..+++|++|++++|.
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~i~----~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~----~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNYIR----TVTASSFPFLEQLQLLELGSQYTPLTIDKE----AFRNLPNLRILDLGSSK 84 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCCCC----EECSSSCSSCCSCSEEEECTTCCCCEECTT----TTSSCTTCCEEECTTCC
T ss_pred CCCCCCC--CCCCcCEEECCCCcCC----ccChhHCcccccCeEEeCCCCCCccccCHH----HhcCCCCCCEEECCCCc
Confidence 3444444 4578999999999997 677788999999999999999665545 44 68999999999999999
Q ss_pred CChhhHHhhhcCCCCCEEEcCCCCCCCccch-hhhccCCCCceeecCCCCCcHHHH-HHHHhhCCCCCEEeccccccccc
Q 045865 88 FNNSILSSLTHLSSLRSLNLLWNRLEGSIDV-KELHNFTNLEYLTLESSSLHISLL-QSIASIFPSLKNLSMSFCEVNGV 165 (225)
Q Consensus 88 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~ 165 (225)
+....|..+..+++|++|++++|.+.+..+. ..+..+++|+.|++++|.+.+..+ ..+.. +++|+.|++++|.+++.
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~-L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK-LNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT-CSSCCEEEEESSCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh-CCCCCEEECCCCcCCee
Confidence 9998899999999999999999999854543 238889999999999999875443 45666 99999999999999866
Q ss_pred cccCCCCCC--CCCcEEEccCCccccchhHHHHHhhcCCC------CcEEEccCCcCCCccchhhc
Q 045865 166 VRGQGFPHF--KSLEHFDMRFARIALNTSFLQIIGESMPS------LKYLLLSYSTLGTNSSRILH 223 (225)
Q Consensus 166 ~~~~~~~~~--~~L~~l~l~~n~i~~~~~~~~~l~~~~~~------L~~L~l~~n~l~~~~~~~~~ 223 (225)
.+. .+..+ ++|+.++++.|.+ .+..+..++. +++ |+.|++++|.+++..|..+.
T Consensus 164 ~~~-~l~~l~~~~L~~L~L~~n~l--~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 225 (844)
T 3j0a_A 164 CEH-ELEPLQGKTLSFFSLAANSL--YSRVSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFS 225 (844)
T ss_dssp CSG-GGHHHHHCSSCCCEECCSBS--CCCCCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred CHH-HcccccCCccceEECCCCcc--ccccccchhh-cCCccccCceeEEecCCCcCchhHHHHHH
Confidence 555 66666 7899999999954 3444443444 444 99999999999988877664
No 57
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=5.3e-20 Score=146.34 Aligned_cols=161 Identities=20% Similarity=0.230 Sum_probs=112.6
Q ss_pred hcCCCCccEEEccCCcccCc-chhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCC-CCCCc-cchhh
Q 045865 44 FTPFQQLESLDLTQNKIAGC-VENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWN-RLEGS-IDVKE 120 (225)
Q Consensus 44 ~~~l~~L~~L~l~~n~i~~~-~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~~ 120 (225)
+..+++|++|++++|.+... .+. .+..+++|++|++++|.+++..+..+..+++|++|++++| .+.+. ++. .
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~ 163 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-L 163 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-H
T ss_pred hccCCCCCEEEccCCCcCHHHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-H
Confidence 34567788888888876543 333 4677888888888888887777777778888888888888 45432 332 5
Q ss_pred hccCCCCceeecCCC-CCcHH-HHHHHHhhCC-CCCEEecccc--ccc-cccccCCCCCCCCCcEEEccCCccccchhHH
Q 045865 121 LHNFTNLEYLTLESS-SLHIS-LLQSIASIFP-SLKNLSMSFC--EVN-GVVRGQGFPHFKSLEHFDMRFARIALNTSFL 194 (225)
Q Consensus 121 ~~~l~~L~~l~l~~~-~~~~~-~~~~~~~~~~-~L~~L~l~~n--~~~-~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~ 194 (225)
+..+++|+.|++++| .+.+. .+..+.. ++ +|+.|++++| .++ +..+. .+.++++|+.|++++|.. .++..+
T Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-l~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~-l~~~~~ 240 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAH-VSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVM-LKNDCF 240 (336)
T ss_dssp HHHCTTCCEEECCCCTTCCHHHHHHHHHH-SCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTT-CCGGGG
T ss_pred HhcCCCCCEEcCCCCCCcChHHHHHHHHh-cccCCCEEEeCCCcccCCHHHHHH-HHhhCCCCCEEeCCCCCc-CCHHHH
Confidence 667788888888888 77754 3455555 77 8888888888 344 23333 556778888888888841 344555
Q ss_pred HHHhhcCCCCcEEEccCCc
Q 045865 195 QIIGESMPSLKYLLLSYST 213 (225)
Q Consensus 195 ~~l~~~~~~L~~L~l~~n~ 213 (225)
..+++ +++|+.|++++|.
T Consensus 241 ~~l~~-l~~L~~L~l~~~~ 258 (336)
T 2ast_B 241 QEFFQ-LNYLQHLSLSRCY 258 (336)
T ss_dssp GGGGG-CTTCCEEECTTCT
T ss_pred HHHhC-CCCCCEeeCCCCC
Confidence 56777 8888888888884
No 58
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=1.5e-18 Score=136.56 Aligned_cols=173 Identities=20% Similarity=0.292 Sum_probs=144.3
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~ 98 (225)
..+++.|+++++.+. .++ .+..+++|++|++++|.+.. .+. +..+++|++|++++|.+... ..+..
T Consensus 40 l~~L~~L~l~~~~i~----~l~--~~~~l~~L~~L~L~~n~i~~-~~~-----~~~l~~L~~L~L~~n~l~~~--~~~~~ 105 (308)
T 1h6u_A 40 LDGITTLSAFGTGVT----TIE--GVQYLNNLIGLELKDNQITD-LAP-----LKNLTKITELELSGNPLKNV--SAIAG 105 (308)
T ss_dssp HHTCCEEECTTSCCC----CCT--TGGGCTTCCEEECCSSCCCC-CGG-----GTTCCSCCEEECCSCCCSCC--GGGTT
T ss_pred cCCcCEEEeeCCCcc----Cch--hhhccCCCCEEEccCCcCCC-Chh-----HccCCCCCEEEccCCcCCCc--hhhcC
Confidence 457899999999887 333 47889999999999999987 333 78899999999999999874 36888
Q ss_pred CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865 99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE 178 (225)
Q Consensus 99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 178 (225)
+++|++|++++|.+. .++ .+..+++|+.|++++|.+.+..+ +.. +++|+.|++++|.+++. +. +..+++|+
T Consensus 106 l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~-l~~L~~L~l~~n~l~~~-~~--l~~l~~L~ 176 (308)
T 1h6u_A 106 LQSIKTLDLTSTQIT-DVT--PLAGLSNLQVLYLDLNQITNISP--LAG-LTNLQYLSIGNAQVSDL-TP--LANLSKLT 176 (308)
T ss_dssp CTTCCEEECTTSCCC-CCG--GGTTCTTCCEEECCSSCCCCCGG--GGG-CTTCCEEECCSSCCCCC-GG--GTTCTTCC
T ss_pred CCCCCEEECCCCCCC-Cch--hhcCCCCCCEEECCCCccCcCcc--ccC-CCCccEEEccCCcCCCC-hh--hcCCCCCC
Confidence 999999999999997 454 58889999999999999875433 666 99999999999999853 33 78899999
Q ss_pred EEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccc
Q 045865 179 HFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSS 219 (225)
Q Consensus 179 ~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~ 219 (225)
.|++++|++... +. +.. +++|+.|++++|++++..|
T Consensus 177 ~L~l~~n~l~~~---~~-l~~-l~~L~~L~L~~N~l~~~~~ 212 (308)
T 1h6u_A 177 TLKADDNKISDI---SP-LAS-LPNLIEVHLKNNQISDVSP 212 (308)
T ss_dssp EEECCSSCCCCC---GG-GGG-CTTCCEEECTTSCCCBCGG
T ss_pred EEECCCCccCcC---hh-hcC-CCCCCEEEccCCccCcccc
Confidence 999999976332 22 677 9999999999999997664
No 59
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.80 E-value=1e-20 Score=162.71 Aligned_cols=192 Identities=13% Similarity=0.214 Sum_probs=145.3
Q ss_pred cCceEEeeccccccccc-------------hhHHhhhhhc--CCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEEC
Q 045865 19 TGRVIALDLSYIYSGEY-------------SWYLNASLFT--PFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNL 83 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~-------------~~~~~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l 83 (225)
..+++.|++++|.+... .....+..+. ++++|++|++++|.+.+..|. .+..+++|++|++
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L 280 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT----FLKALPEMQLINV 280 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT----TTTTCSSCCEEEC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH----HHhcCCCCCEEEC
Confidence 46889999999998730 0001445666 899999999999998887887 6889999999999
Q ss_pred CCCC-CCh-hhHHhhhcC------CCCCEEEcCCCCCCCccch-hhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCE
Q 045865 84 SGNS-FNN-SILSSLTHL------SSLRSLNLLWNRLEGSIDV-KELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKN 154 (225)
Q Consensus 84 ~~~~-l~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 154 (225)
++|. +++ ..|..+..+ ++|++|++++|.+. .+|. ..+..+++|+.|++++|.+.+.+| .+.. +++|+.
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~-l~~L~~ 357 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS-EIKLAS 357 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE-EEEESE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCC-CCCCCE
Confidence 9998 887 788888776 89999999999987 6663 257888899999999998876666 5555 778888
Q ss_pred EeccccccccccccCCCCCCCC-CcEEEccCCccccchhHHHHHhhcCC--CCcEEEccCCcCCCccchhhc
Q 045865 155 LSMSFCEVNGVVRGQGFPHFKS-LEHFDMRFARIALNTSFLQIIGESMP--SLKYLLLSYSTLGTNSSRILH 223 (225)
Q Consensus 155 L~l~~n~~~~~~~~~~~~~~~~-L~~l~l~~n~i~~~~~~~~~l~~~~~--~L~~L~l~~n~l~~~~~~~~~ 223 (225)
|++++|.++ .+|. .+.++++ |+.|++++|++ . .+|..+.. ++ +|+.|++++|.+++.+|+.+.
T Consensus 358 L~L~~N~l~-~lp~-~l~~l~~~L~~L~Ls~N~l--~-~lp~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 358 LNLAYNQIT-EIPA-NFCGFTEQVENLSFAHNKL--K-YIPNIFDA-KSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp EECCSSEEE-ECCT-TSEEECTTCCEEECCSSCC--S-SCCSCCCT-TCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred EECCCCccc-cccH-hhhhhcccCcEEEccCCcC--c-ccchhhhh-cccCccCEEECcCCcCCCcchhhhc
Confidence 888888777 5565 6777777 88888888754 2 45554443 33 677777777777776666554
No 60
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=6.3e-20 Score=158.76 Aligned_cols=157 Identities=23% Similarity=0.268 Sum_probs=110.0
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~ 98 (225)
+.+++.|++++|.+. .+++..|.++++|++|++++|.+.+..+. .+..+++|++|++++|.+....+..+..
T Consensus 24 ~~~l~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 24 PTNITVLNLTHNQLR----RLPAANFTRYSQLTSLDVGFNTISKLEPE----LCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp CTTCSEEECCSSCCC----CCCGGGGGGGTTCSEEECCSSCCCCCCTT----HHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCcEEECCCCCCC----CcCHHHHhCCCcCcEEECCCCccCccCHH----HHhcccCcCEEECCCCccCccChhhhcc
Confidence 357899999999887 56777788888899999988888876666 5778888888888888887755556778
Q ss_pred CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCC--CCCCC
Q 045865 99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGF--PHFKS 176 (225)
Q Consensus 99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~~ 176 (225)
+++|++|++++|.+. .+++..+..+++|++|++++|.+.+..+..+.. +++|++|++++|.+++..+. .+ ..+++
T Consensus 96 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~ 172 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSE-ELDIFANSS 172 (680)
T ss_dssp CTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSC-CTTCCEEECCSSCCCCBCHH-HHGGGTTCE
T ss_pred CCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcc-cccCCEEEccCCcccccCHH-Hhhcccccc
Confidence 888888888888776 444336677777777777777665444444444 66677777777666543322 22 23455
Q ss_pred CcEEEccCCc
Q 045865 177 LEHFDMRFAR 186 (225)
Q Consensus 177 L~~l~l~~n~ 186 (225)
|+.|++++|+
T Consensus 173 L~~L~L~~n~ 182 (680)
T 1ziw_A 173 LKKLELSSNQ 182 (680)
T ss_dssp ESEEECTTCC
T ss_pred ccEEECCCCc
Confidence 5566665553
No 61
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=3.4e-19 Score=139.26 Aligned_cols=174 Identities=20% Similarity=0.232 Sum_probs=144.2
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~ 98 (225)
..+++.|+++++.+. .++ .+..+++|++|++++|.+.. .++ +..+++|++|++++|.+... ..+..
T Consensus 45 l~~L~~L~l~~~~i~----~~~--~~~~l~~L~~L~L~~n~l~~-~~~-----l~~l~~L~~L~l~~n~l~~~--~~l~~ 110 (291)
T 1h6t_A 45 LNSIDQIIANNSDIK----SVQ--GIQYLPNVTKLFLNGNKLTD-IKP-----LANLKNLGWLFLDENKVKDL--SSLKD 110 (291)
T ss_dssp HHTCCEEECTTSCCC----CCT--TGGGCTTCCEEECCSSCCCC-CGG-----GTTCTTCCEEECCSSCCCCG--GGGTT
T ss_pred cCcccEEEccCCCcc----cCh--hHhcCCCCCEEEccCCccCC-Ccc-----cccCCCCCEEECCCCcCCCC--hhhcc
Confidence 357899999999887 332 37889999999999999987 333 68899999999999999873 34889
Q ss_pred CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865 99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE 178 (225)
Q Consensus 99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 178 (225)
+++|++|++++|.+. .++ .+..+++|+.|++++|.+.+. ..+.. +++|+.|++++|.+++..+ +..+++|+
T Consensus 111 l~~L~~L~L~~n~i~-~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~-l~~L~~L~L~~N~l~~~~~---l~~l~~L~ 181 (291)
T 1h6t_A 111 LKKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNNKITDI--TVLSR-LTKLDTLSLEDNQISDIVP---LAGLTKLQ 181 (291)
T ss_dssp CTTCCEEECTTSCCC-CCG--GGGGCTTCCEEECCSSCCCCC--GGGGG-CTTCSEEECCSSCCCCCGG---GTTCTTCC
T ss_pred CCCCCEEECCCCcCC-CCh--hhcCCCCCCEEEccCCcCCcc--hhhcc-CCCCCEEEccCCccccchh---hcCCCccC
Confidence 999999999999987 443 688899999999999998754 45666 9999999999999985432 78899999
Q ss_pred EEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccch
Q 045865 179 HFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSR 220 (225)
Q Consensus 179 ~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~ 220 (225)
.|++++|++.. ++ .+.. +++|+.|++++|+++.....
T Consensus 182 ~L~L~~N~i~~---l~-~l~~-l~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 182 NLYLSKNHISD---LR-ALAG-LKNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp EEECCSSCCCB---CG-GGTT-CTTCSEEEEEEEEEECCCEE
T ss_pred EEECCCCcCCC---Ch-hhcc-CCCCCEEECcCCcccCCccc
Confidence 99999997743 33 3777 99999999999999865443
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=3.4e-20 Score=154.66 Aligned_cols=183 Identities=20% Similarity=0.281 Sum_probs=126.2
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHH-----
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILS----- 94 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~----- 94 (225)
.+++.|++++|.+. .+++..|..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+.
T Consensus 34 ~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~~~~~L~~ 103 (487)
T 3oja_A 34 WNVKELDLSGNPLS----QISAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELLVGPSIET 103 (487)
T ss_dssp GGCCEEECCSSCCC----CCCGGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEEEEECTTCCE
T ss_pred CCccEEEeeCCcCC----CCCHHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCCCCCCCCcCE
Confidence 37888888888887 5666778888888888888888875332 56677777777777765432110
Q ss_pred -----------hhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccc
Q 045865 95 -----------SLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163 (225)
Q Consensus 95 -----------~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 163 (225)
....+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.+..+..+...+++|+.|++++|.++
T Consensus 104 L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 104 LHAANNNISRVSCSRGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp EECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred EECcCCcCCCCCccccCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 011345677777777777644343 66777888888888888876556555522788888888888887
Q ss_pred cccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchh
Q 045865 164 GVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRI 221 (225)
Q Consensus 164 ~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~ 221 (225)
+. +. ...+++|+.|++++|++. .+|..+.. +++|+.|++++|.|++ +|..
T Consensus 183 ~~-~~--~~~l~~L~~L~Ls~N~l~---~~~~~~~~-l~~L~~L~Ls~N~l~~-lp~~ 232 (487)
T 3oja_A 183 DV-KG--QVVFAKLKTLDLSSNKLA---FMGPEFQS-AAGVTWISLRNNKLVL-IEKA 232 (487)
T ss_dssp EE-EC--CCCCTTCCEEECCSSCCC---EECGGGGG-GTTCSEEECTTSCCCE-ECTT
T ss_pred cc-cc--cccCCCCCEEECCCCCCC---CCCHhHcC-CCCccEEEecCCcCcc-cchh
Confidence 44 22 345788888888888652 34444666 8888888888888885 4443
No 63
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=2.1e-19 Score=155.52 Aligned_cols=143 Identities=19% Similarity=0.249 Sum_probs=83.1
Q ss_pred hcCCCCCEEECCCCCCC--hhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHH-------
Q 045865 73 SRLNNLKMLNLSGNSFN--NSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQ------- 143 (225)
Q Consensus 73 ~~l~~L~~L~l~~~~l~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~------- 143 (225)
..++.|+.|++.+|.+. +..|..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+.+....
T Consensus 451 ~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 529 (680)
T 1ziw_A 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529 (680)
T ss_dssp TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCC
T ss_pred hcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcc
Confidence 33444444444444332 234455566667777777777766 44433566677777777777766532111
Q ss_pred -HHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHH-HHhhcCCCCcEEEccCCcCCCccchh
Q 045865 144 -SIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQ-IIGESMPSLKYLLLSYSTLGTNSSRI 221 (225)
Q Consensus 144 -~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~-~l~~~~~~L~~L~l~~n~l~~~~~~~ 221 (225)
.+.. +++|+.|++++|.++ .++...|.++++|+.+++++|++. .++. .+.. +++|+.|++++|++++..|..
T Consensus 530 ~~~~~-l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~---~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~~ 603 (680)
T 1ziw_A 530 YFLKG-LSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLN---TLPASVFNN-QVSLKSLNLQKNLITSVEKKV 603 (680)
T ss_dssp CTTTT-CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTT-CTTCCEEECTTSCCCBCCHHH
T ss_pred hhhcC-CCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCC---cCCHhHhCC-CCCCCEEECCCCcCCccChhH
Confidence 1334 667777777777766 444435677777777777777542 2332 3344 677777777777777666654
Q ss_pred h
Q 045865 222 L 222 (225)
Q Consensus 222 ~ 222 (225)
+
T Consensus 604 ~ 604 (680)
T 1ziw_A 604 F 604 (680)
T ss_dssp H
T ss_pred h
Confidence 3
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=9.6e-21 Score=149.76 Aligned_cols=183 Identities=20% Similarity=0.276 Sum_probs=113.5
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHH-----
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILS----- 94 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~----- 94 (225)
.++++|++++|.+. .+.+..+.++++|++|++++|.+.+.. + +..+++|++|++++|.+++..+.
T Consensus 34 ~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~-----~~~l~~L~~L~Ls~n~l~~l~~~~~L~~ 103 (317)
T 3o53_A 34 WNVKELDLSGNPLS----QISAADLAPFTKLELLNLSSNVLYETL-D-----LESLSTLRTLDLNNNYVQELLVGPSIET 103 (317)
T ss_dssp GGCSEEECTTSCCC----CCCHHHHTTCTTCCEEECTTSCCEEEE-E-----ETTCTTCCEEECCSSEEEEEEECTTCCE
T ss_pred CCCCEEECcCCccC----cCCHHHhhCCCcCCEEECCCCcCCcch-h-----hhhcCCCCEEECcCCccccccCCCCcCE
Confidence 36777888888776 455566777777777777777776522 2 45666777776666655431100
Q ss_pred -----------hhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccc
Q 045865 95 -----------SLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163 (225)
Q Consensus 95 -----------~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 163 (225)
....+++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+...+++|+.|++++|.++
T Consensus 104 L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 104 LHAANNNISRVSCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp EECCSSCCSEEEECCCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred EECCCCccCCcCccccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 0112455666666666665 3333356667778888888887775544444322677888888888776
Q ss_pred cccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchh
Q 045865 164 GVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRI 221 (225)
Q Consensus 164 ~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~ 221 (225)
+. +. ...+++|+.|++++|++. .++..+.. +++|+.|++++|++++ +|..
T Consensus 183 ~~-~~--~~~l~~L~~L~Ls~N~l~---~l~~~~~~-l~~L~~L~L~~N~l~~-l~~~ 232 (317)
T 3o53_A 183 DV-KG--QVVFAKLKTLDLSSNKLA---FMGPEFQS-AAGVTWISLRNNKLVL-IEKA 232 (317)
T ss_dssp EE-EC--CCCCTTCCEEECCSSCCC---EECGGGGG-GTTCSEEECTTSCCCE-ECTT
T ss_pred cc-cc--ccccccCCEEECCCCcCC---cchhhhcc-cCcccEEECcCCcccc-hhhH
Confidence 43 22 334677777777777552 33334555 7777777777777773 3433
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=4.3e-20 Score=156.54 Aligned_cols=189 Identities=18% Similarity=0.185 Sum_probs=126.8
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhH-Hhhh
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSIL-SSLT 97 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~ 97 (225)
...++.|++++|.+... ...+..+..+++|++|++++|.+... +. .+..+++|++|++++|.+.+..+ ..+.
T Consensus 346 ~~~L~~L~l~~n~l~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~-~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 418 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFK--GCCSQSDFGTTSLKYLDLSFNGVITM-SS----NFLGLEQLEHLDFQHSNLKQMSEFSVFL 418 (570)
T ss_dssp CTTCCEEECCSSCCBEE--EEEEHHHHTCSCCCEEECCSCSEEEE-EE----EEETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred CCCCCEEeCcCCccCcc--ccccccccccCccCEEECCCCccccc-cc----cccccCCCCEEEccCCccccccchhhhh
Confidence 34666777777766521 01134456677777777777776653 22 25667777777777777655433 3566
Q ss_pred cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCc-HHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCC
Q 045865 98 HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH-ISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKS 176 (225)
Q Consensus 98 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 176 (225)
.+++|++|++++|.+....+. .+..+++|+.|++.+|.+. +..|..+.. +++|+.|++++|.+++..+. .+.++++
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~p~~~~~-l~~L~~L~l~~n~l~~~~~~-~~~~l~~ 495 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTE-LRNLTFLDLSQCQLEQLSPT-AFNSLSS 495 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTT-CTTCCEEECTTSCCCEECTT-TTTTCTT
T ss_pred cCCCCCEEeCcCCcccccchh-hhhcCCcCcEEECcCCcCccccchhhhhc-ccCCCEEECCCCccccCChh-hhhcccC
Confidence 777788888888877644443 6677778888888888765 334555555 78888888888887755555 7778888
Q ss_pred CcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccch
Q 045865 177 LEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSR 220 (225)
Q Consensus 177 L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~ 220 (225)
|+.|++++|++ .+..+..+.. +++|+.|++++|++++..|.
T Consensus 496 L~~L~l~~n~l--~~~~~~~~~~-l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 496 LQVLNMASNQL--KSVPDGIFDR-LTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCEEECCSSCC--SCCCTTTTTT-CTTCCEEECCSSCBCCCTTT
T ss_pred CCEEeCCCCcC--CCCCHHHhhc-ccCCcEEEecCCcccCCCcc
Confidence 88888888854 3333445666 88888888888888877663
No 66
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=4.6e-18 Score=135.76 Aligned_cols=174 Identities=17% Similarity=0.293 Sum_probs=118.8
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 99 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 99 (225)
..++.|+++++.+.. +.+ +..+++|++|++++|.+.. .+. +..+++|+.|++++|.+....+ +..+
T Consensus 155 ~~L~~L~l~~~~~~~----~~~--~~~l~~L~~L~l~~n~l~~-~~~-----~~~l~~L~~L~l~~n~l~~~~~--~~~~ 220 (347)
T 4fmz_A 155 TGLNYLTVTESKVKD----VTP--IANLTDLYSLSLNYNQIED-ISP-----LASLTSLHYFTAYVNQITDITP--VANM 220 (347)
T ss_dssp TTCCEEECCSSCCCC----CGG--GGGCTTCSEEECTTSCCCC-CGG-----GGGCTTCCEEECCSSCCCCCGG--GGGC
T ss_pred CCCcEEEecCCCcCC----chh--hccCCCCCEEEccCCcccc-ccc-----ccCCCccceeecccCCCCCCch--hhcC
Confidence 345555555555442 111 4556666666666666654 222 4566666666666666655333 6677
Q ss_pred CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcE
Q 045865 100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEH 179 (225)
Q Consensus 100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 179 (225)
++|++|++++|.+. ..+ .+..+++|+.|++++|.+.+. ..+.. +++|+.|++++|.+++. . .+..+++|+.
T Consensus 221 ~~L~~L~l~~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~-l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~ 291 (347)
T 4fmz_A 221 TRLNSLKIGNNKIT-DLS--PLANLSQLTWLEIGTNQISDI--NAVKD-LTKLKMLNVGSNQISDI--S-VLNNLSQLNS 291 (347)
T ss_dssp TTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCCCC--GGGTT-CTTCCEEECCSSCCCCC--G-GGGGCTTCSE
T ss_pred CcCCEEEccCCccC-CCc--chhcCCCCCEEECCCCccCCC--hhHhc-CCCcCEEEccCCccCCC--h-hhcCCCCCCE
Confidence 78888888888776 444 266778888888888877642 34555 78888888888888743 2 5778888999
Q ss_pred EEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccc
Q 045865 180 FDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSS 219 (225)
Q Consensus 180 l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~ 219 (225)
|++++|+ ..+..+..++. +++|+.|++++|++++..|
T Consensus 292 L~L~~n~--l~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 292 LFLNNNQ--LGNEDMEVIGG-LTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp EECCSSC--CCGGGHHHHHT-CTTCSEEECCSSSCCCCGG
T ss_pred EECcCCc--CCCcChhHhhc-cccCCEEEccCCccccccC
Confidence 9999994 45566777888 9999999999999988766
No 67
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=2e-18 Score=144.93 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=53.6
Q ss_pred CCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchh
Q 045865 149 FPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRI 221 (225)
Q Consensus 149 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~ 221 (225)
+++|+.|++++|.+++..+. .+.++++|+.|++++|++.....+|..++. +++|+.|++++|.+++.+|..
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-l~~L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQ-MKSLQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTT-CTTCCEEECCSSCCBCCGGGC
T ss_pred CCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCccCccccchHHHhh-CCCCCEEECCCCcCCcccccc
Confidence 56677777777777755555 777888888888888866443467777888 899999999999998755543
No 68
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=5e-20 Score=145.16 Aligned_cols=184 Identities=18% Similarity=0.169 Sum_probs=143.6
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChh--hH--H
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNS--IL--S 94 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~--~~--~ 94 (225)
...+++|++++|.+......+....+..+++|++|++++|.+....+. .+..+++|++|++++|.+.+. .+ .
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 191 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCE----QVRAFPALTSLDLSDNPGLGERGLMAAL 191 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTT----SCCCCTTCCEEECCSCTTCHHHHHHTTS
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHH----HhccCCCCCEEECCCCCCccchhhhHHH
Confidence 457899999999987532223445556899999999999999886665 588999999999999998653 22 2
Q ss_pred hhhcCCCCCEEEcCCCCCCCccchh---hhccCCCCceeecCCCCCcHHHHHHHHhhC---CCCCEEecccccccccccc
Q 045865 95 SLTHLSSLRSLNLLWNRLEGSIDVK---ELHNFTNLEYLTLESSSLHISLLQSIASIF---PSLKNLSMSFCEVNGVVRG 168 (225)
Q Consensus 95 ~l~~l~~L~~L~l~~n~~~~~~~~~---~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~ 168 (225)
.+..+++|++|++++|.+. .++.. .+..+++|+.|++++|.+.+..|..+.. + ++|+.|++++|.++ .+|.
T Consensus 192 ~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~-~~~~~~L~~L~Ls~N~l~-~lp~ 268 (310)
T 4glp_A 192 CPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR-CMWSSALNSLNLSFAGLE-QVPK 268 (310)
T ss_dssp CTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS-CCCCTTCCCEECCSSCCC-SCCS
T ss_pred hhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh-ccCcCcCCEEECCCCCCC-chhh
Confidence 2357899999999999996 44321 2467899999999999998665555555 5 69999999999998 6666
Q ss_pred CCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCc
Q 045865 169 QGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTN 217 (225)
Q Consensus 169 ~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~ 217 (225)
.+. ++|+.|++++|++. .+|. +.. +++|+.|++++|+++++
T Consensus 269 -~~~--~~L~~L~Ls~N~l~---~~~~-~~~-l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 269 -GLP--AKLRVLDLSSNRLN---RAPQ-PDE-LPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp -CCC--SCCSCEECCSCCCC---SCCC-TTS-CCCCSCEECSSTTTSCC
T ss_pred -hhc--CCCCEEECCCCcCC---CCch-hhh-CCCccEEECcCCCCCCC
Confidence 443 79999999999763 2232 456 99999999999999864
No 69
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=5.8e-19 Score=148.24 Aligned_cols=162 Identities=17% Similarity=0.229 Sum_probs=136.4
Q ss_pred cCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCCh--hhHHhhhcCCCCCEEEcCCCCCCCccchhhhc
Q 045865 45 TPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNN--SILSSLTHLSSLRSLNLLWNRLEGSIDVKELH 122 (225)
Q Consensus 45 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 122 (225)
..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+.+|...+.
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFE----NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTT----TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred hhCCcccEEEeECCccChhhhh----hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 6789999999999999886676 58899999999999999986 45678899999999999999998557765678
Q ss_pred cCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHH-HhhcC
Q 045865 123 NFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQI-IGESM 201 (225)
Q Consensus 123 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~-l~~~~ 201 (225)
.+++|+.|++++|.+.+..+..+ .++|+.|++++|.++ .+|. .+..+++|+.+++++|++. .+|.. +.. +
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l---~~~L~~L~Ls~N~l~-~ip~-~~~~l~~L~~L~L~~N~l~---~l~~~~~~~-l 467 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCL---PPRIKVLDLHSNKIK-SIPK-QVVKLEALQELNVASNQLK---SVPDGIFDR-L 467 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSC---CTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCC---CCCTTTTTT-C
T ss_pred cCccCCEEECcCCCCCcchhhhh---cccCCEEECCCCccc-ccch-hhhcCCCCCEEECCCCcCC---ccCHHHhcc-C
Confidence 88999999999999976554322 268999999999998 6676 5569999999999999763 45554 677 9
Q ss_pred CCCcEEEccCCcCCCccc
Q 045865 202 PSLKYLLLSYSTLGTNSS 219 (225)
Q Consensus 202 ~~L~~L~l~~n~l~~~~~ 219 (225)
++|+.|++++|+++...+
T Consensus 468 ~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 468 TSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TTCCEEECCSSCBCCCHH
T ss_pred CcccEEECcCCCCcccCC
Confidence 999999999999998765
No 70
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.78 E-value=1.4e-18 Score=138.81 Aligned_cols=172 Identities=14% Similarity=0.202 Sum_probs=141.8
Q ss_pred CcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhh
Q 045865 18 TTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 97 (225)
Q Consensus 18 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~ 97 (225)
....+++|++++|.+. .+.+ +..+++|+.|++++|.+... +. +..+++|++|++++|.++...+ +.
T Consensus 175 ~l~~L~~L~l~~n~l~----~~~~--~~~l~~L~~L~l~~n~l~~~-~~-----~~~~~~L~~L~l~~n~l~~~~~--~~ 240 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIE----DISP--LASLTSLHYFTAYVNQITDI-TP-----VANMTRLNSLKIGNNKITDLSP--LA 240 (347)
T ss_dssp GCTTCSEEECTTSCCC----CCGG--GGGCTTCCEEECCSSCCCCC-GG-----GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred cCCCCCEEEccCCccc----cccc--ccCCCccceeecccCCCCCC-ch-----hhcCCcCCEEEccCCccCCCcc--hh
Confidence 3468999999999987 3333 78899999999999998863 32 6789999999999999987544 88
Q ss_pred cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCC
Q 045865 98 HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSL 177 (225)
Q Consensus 98 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 177 (225)
.+++|++|++++|.+. .++ .+..+++|+.|++++|.+.+. ..+.. +++|+.|++++|.+++..+. .+..+++|
T Consensus 241 ~l~~L~~L~l~~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~-l~~L~~L~L~~n~l~~~~~~-~l~~l~~L 313 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQIS-DIN--AVKDLTKLKMLNVGSNQISDI--SVLNN-LSQLNSLFLNNNQLGNEDME-VIGGLTNL 313 (347)
T ss_dssp TCTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCCCC--GGGGG-CTTCSEEECCSSCCCGGGHH-HHHTCTTC
T ss_pred cCCCCCEEECCCCccC-CCh--hHhcCCCcCEEEccCCccCCC--hhhcC-CCCCCEEECcCCcCCCcChh-HhhccccC
Confidence 9999999999999987 443 688899999999999998753 34566 99999999999999866666 78899999
Q ss_pred cEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCC
Q 045865 178 EHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLG 215 (225)
Q Consensus 178 ~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~ 215 (225)
+.+++++|++ .+..| +.. +++|+.|++++|+|+
T Consensus 314 ~~L~L~~n~l--~~~~~--~~~-l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 314 TTLFLSQNHI--TDIRP--LAS-LSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSSC--CCCGG--GGG-CTTCSEESSSCC---
T ss_pred CEEEccCCcc--ccccC--hhh-hhccceeehhhhccc
Confidence 9999999965 33333 777 999999999999986
No 71
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.78 E-value=1.2e-19 Score=153.90 Aligned_cols=169 Identities=19% Similarity=0.232 Sum_probs=138.7
Q ss_pred cCCCCccEEEccCCcccCcc--hhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhc
Q 045865 45 TPFQQLESLDLTQNKIAGCV--ENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELH 122 (225)
Q Consensus 45 ~~l~~L~~L~l~~n~i~~~~--~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 122 (225)
..+++|++|++++|.+.... +. .+..+++|++|++++|.+....+. +..+++|++|++++|.+.+..+...+.
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~ 418 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQ----SDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL 418 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEH----HHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred ccCCCCCEEeCcCCccCccccccc----cccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhh
Confidence 56788889999988887643 34 578899999999999988774444 888999999999999887554434678
Q ss_pred cCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccc-cccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcC
Q 045865 123 NFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN-GVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESM 201 (225)
Q Consensus 123 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~ 201 (225)
.+++|+.|++++|.+.+..+..+.. +++|+.|++++|.++ +..|. .+..+++|+.|++++|++ .+..|..+.. +
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l--~~~~~~~~~~-l 493 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQL--EQLSPTAFNS-L 493 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTT-CTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCC--CEECTTTTTT-C
T ss_pred cCCCCCEEeCcCCcccccchhhhhc-CCcCcEEECcCCcCccccchh-hhhcccCCCEEECCCCcc--ccCChhhhhc-c
Confidence 8899999999999987666666777 999999999999987 45666 899999999999999954 4555777888 9
Q ss_pred CCCcEEEccCCcCCCccchhhc
Q 045865 202 PSLKYLLLSYSTLGTNSSRILH 223 (225)
Q Consensus 202 ~~L~~L~l~~n~l~~~~~~~~~ 223 (225)
++|+.|++++|++++.+|..|.
T Consensus 494 ~~L~~L~l~~n~l~~~~~~~~~ 515 (570)
T 2z63_A 494 SSLQVLNMASNQLKSVPDGIFD 515 (570)
T ss_dssp TTCCEEECCSSCCSCCCTTTTT
T ss_pred cCCCEEeCCCCcCCCCCHHHhh
Confidence 9999999999999998887664
No 72
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=1.1e-19 Score=160.09 Aligned_cols=188 Identities=14% Similarity=0.259 Sum_probs=144.2
Q ss_pred cCceEEeeccccccccch----h---------HHhhhhhc--CCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEEC
Q 045865 19 TGRVIALDLSYIYSGEYS----W---------YLNASLFT--PFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNL 83 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~----~---------~~~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l 83 (225)
..+++.|++++|.+.... | ...+..+. ++++|++|++++|.+.+..|. .+..+++|+.|++
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~----~l~~L~~L~~L~L 522 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD----FLYDLPELQSLNI 522 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG----GGGGCSSCCEEEC
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH----HHhCCCCCCEEEC
Confidence 467899999999987310 0 01334444 899999999999998887887 6899999999999
Q ss_pred CCCC-CCh-hhHHhhhcCC-------CCCEEEcCCCCCCCccch-hhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCC
Q 045865 84 SGNS-FNN-SILSSLTHLS-------SLRSLNLLWNRLEGSIDV-KELHNFTNLEYLTLESSSLHISLLQSIASIFPSLK 153 (225)
Q Consensus 84 ~~~~-l~~-~~~~~l~~l~-------~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~ 153 (225)
++|. +++ .+|..+..+. +|+.|++++|.+. .+|. ..+..+++|+.|++++|.+. .+| .+.. +++|+
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~-L~~L~ 598 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGT-NVKLT 598 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCT-TSEES
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcC-CCcce
Confidence 9998 887 6777666554 9999999999987 6663 36788899999999999887 555 5666 88899
Q ss_pred EEeccccccccccccCCCCCCCC-CcEEEccCCccccchhHHHHHhhcCC--CCcEEEccCCcCCCccch
Q 045865 154 NLSMSFCEVNGVVRGQGFPHFKS-LEHFDMRFARIALNTSFLQIIGESMP--SLKYLLLSYSTLGTNSSR 220 (225)
Q Consensus 154 ~L~l~~n~~~~~~~~~~~~~~~~-L~~l~l~~n~i~~~~~~~~~l~~~~~--~L~~L~l~~n~l~~~~~~ 220 (225)
.|++++|.++ .+|. .+.++++ |+.|++++|++. .+|..+.. ++ +|+.|++++|++++.+|.
T Consensus 599 ~L~Ls~N~l~-~lp~-~l~~l~~~L~~L~Ls~N~L~---~lp~~~~~-~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 599 DLKLDYNQIE-EIPE-DFCAFTDQVEGLGFSHNKLK---YIPNIFNA-KSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp EEECCSSCCS-CCCT-TSCEECTTCCEEECCSSCCC---SCCSCCCT-TCSSCEEEEECCSSCTTTTSSS
T ss_pred EEECcCCccc-cchH-HHhhccccCCEEECcCCCCC---cCchhhhc-cccCCCCEEECcCCcCCCcccc
Confidence 9999999887 6676 6888888 999999988652 55554444 43 377777777777776554
No 73
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=9.7e-19 Score=144.68 Aligned_cols=198 Identities=20% Similarity=0.094 Sum_probs=115.4
Q ss_pred ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHH-hcCCCCCEEECCCCCCChh----hHHh
Q 045865 21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERL-SRLNNLKMLNLSGNSFNNS----ILSS 95 (225)
Q Consensus 21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~----~~~~ 95 (225)
.+++|++++|.+...++...+..+..+++|++|++++|.+...........+ ..+++|++|++++|.++.. ++..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 4555555555554332233344455566666666666655432221111111 2356666777766666553 3445
Q ss_pred hhcCCCCCEEEcCCCCCCCccchhhhc-----cCCCCceeecCCCCCcHH----HHHHHHhhCCCCCEEecccccccccc
Q 045865 96 LTHLSSLRSLNLLWNRLEGSIDVKELH-----NFTNLEYLTLESSSLHIS----LLQSIASIFPSLKNLSMSFCEVNGVV 166 (225)
Q Consensus 96 l~~l~~L~~L~l~~n~~~~~~~~~~~~-----~l~~L~~l~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~ 166 (225)
+..+++|++|++++|.+.+..+. .+. ..++|+.|++++|.+.+. ++..+.. +++|+.|++++|.+++..
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~ 357 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGAR-LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ-NRFLLELQISNNRLEDAG 357 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHH-HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH-CSSCCEEECCSSBCHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHH-HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh-CCCccEEEccCCcccccc
Confidence 55567777777777766422111 221 124677777777776643 3455555 788888888888776443
Q ss_pred cc---CCCC-CCCCCcEEEccCCccccc--hhHHHHHhhcCCCCcEEEccCCcCCCccchh
Q 045865 167 RG---QGFP-HFKSLEHFDMRFARIALN--TSFLQIIGESMPSLKYLLLSYSTLGTNSSRI 221 (225)
Q Consensus 167 ~~---~~~~-~~~~L~~l~l~~n~i~~~--~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~ 221 (225)
+. ..+. ..++|+.|++++|++... ..++..+.. +++|+.|++++|++++.....
T Consensus 358 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~N~i~~~~~~~ 417 (461)
T 1z7x_W 358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA-NHSLRELDLSNNCLGDAGILQ 417 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CCCCCEEECCSSSCCHHHHHH
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh-CCCccEEECCCCCCCHHHHHH
Confidence 32 0122 256888888888855221 166777888 889999999999888764433
No 74
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.77 E-value=8.5e-19 Score=148.68 Aligned_cols=161 Identities=20% Similarity=0.267 Sum_probs=134.2
Q ss_pred cCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCCh--hhHHhhhcCCCCCEEEcCCCCCCCccchhhhc
Q 045865 45 TPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNN--SILSSLTHLSSLRSLNLLWNRLEGSIDVKELH 122 (225)
Q Consensus 45 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 122 (225)
..+++|++|++++|.+.+..+. .+..+++|++|++++|.+++ ..+..+..+++|++|++++|.+.+.++...+.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 425 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQ----GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTT----TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred cCCCCceEEECCCCccccchhh----hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence 5778999999999999886666 58899999999999999986 34677889999999999999998547765678
Q ss_pred cCCCCceeecCCCCCcHHHHHHHHhhC-CCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHH-Hhhc
Q 045865 123 NFTNLEYLTLESSSLHISLLQSIASIF-PSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQI-IGES 200 (225)
Q Consensus 123 ~l~~L~~l~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~-l~~~ 200 (225)
.+++|+.|++++|.+.+..+.. + ++|+.|++++|.++ .+|. .+.++++|+.|++++|++. .+|.. +..
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~~----l~~~L~~L~L~~N~l~-~ip~-~~~~l~~L~~L~L~~N~l~---~l~~~~~~~- 495 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFRC----LPPKVKVLDLHNNRIM-SIPK-DVTHLQALQELNVASNQLK---SVPDGVFDR- 495 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGSS----CCTTCSEEECCSSCCC-CCCT-TTTSSCCCSEEECCSSCCC---CCCTTSTTT-
T ss_pred CcccCCEEECCCCCCCcchhhh----hcCcCCEEECCCCcCc-ccCh-hhcCCCCCCEEECCCCCCC---CCCHHHHhc-
Confidence 8899999999999987654432 4 68999999999998 6676 5559999999999999663 45655 777
Q ss_pred CCCCcEEEccCCcCCCccc
Q 045865 201 MPSLKYLLLSYSTLGTNSS 219 (225)
Q Consensus 201 ~~~L~~L~l~~n~l~~~~~ 219 (225)
+++|+.|++++|++++..+
T Consensus 496 l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 496 LTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CTTCCCEECCSCCBCCCHH
T ss_pred CCCCCEEEecCCCcCCCcc
Confidence 9999999999999998665
No 75
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=1.5e-18 Score=147.96 Aligned_cols=174 Identities=20% Similarity=0.242 Sum_probs=145.6
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~ 98 (225)
...++.|+++++.+. .++ .+..+++|+.|++++|.+.. .++ +..+++|+.|++++|.+... ..+..
T Consensus 42 L~~L~~L~l~~n~i~----~l~--~l~~l~~L~~L~Ls~N~l~~-~~~-----l~~l~~L~~L~Ls~N~l~~l--~~l~~ 107 (605)
T 1m9s_A 42 LNSIDQIIANNSDIK----SVQ--GIQYLPNVTKLFLNGNKLTD-IKP-----LTNLKNLGWLFLDENKIKDL--SSLKD 107 (605)
T ss_dssp HTTCCCCBCTTCCCC----CCT--TGGGCTTCCEEECTTSCCCC-CGG-----GGGCTTCCEEECCSSCCCCC--TTSTT
T ss_pred CCCCCEEECcCCCCC----CCh--HHccCCCCCEEEeeCCCCCC-Chh-----hccCCCCCEEECcCCCCCCC--hhhcc
Confidence 467899999999987 343 47889999999999999987 333 78999999999999999773 36888
Q ss_pred CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865 99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE 178 (225)
Q Consensus 99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 178 (225)
+++|+.|++++|.+. .++ .+..+++|+.|+|++|.+.+. ..+.. +++|+.|++++|.+.+..+ +..+++|+
T Consensus 108 l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~-l~~L~~L~Ls~N~l~~~~~---l~~l~~L~ 178 (605)
T 1m9s_A 108 LKKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNNKITDI--TVLSR-LTKLDTLSLEDNQISDIVP---LAGLTKLQ 178 (605)
T ss_dssp CTTCCEEECTTSCCC-CCG--GGGGCTTCSEEECCSSCCCCC--GGGGS-CTTCSEEECCSSCCCCCGG---GTTCTTCC
T ss_pred CCCCCEEEecCCCCC-CCc--cccCCCccCEEECCCCccCCc--hhhcc-cCCCCEEECcCCcCCCchh---hccCCCCC
Confidence 999999999999997 443 688899999999999998754 45666 9999999999999985543 78899999
Q ss_pred EEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccch
Q 045865 179 HFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSR 220 (225)
Q Consensus 179 ~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~ 220 (225)
.|++++|+|.. + ..+.. +++|+.|+|++|++++.+..
T Consensus 179 ~L~Ls~N~i~~---l-~~l~~-l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 179 NLYLSKNHISD---L-RALAG-LKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp EEECCSSCCCB---C-GGGTT-CTTCSEEECCSEEEECCCCC
T ss_pred EEECcCCCCCC---C-hHHcc-CCCCCEEEccCCcCcCCccc
Confidence 99999997643 3 34777 99999999999999876443
No 76
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.77 E-value=2.9e-18 Score=145.44 Aligned_cols=105 Identities=28% Similarity=0.324 Sum_probs=71.0
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 99 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 99 (225)
..+++|++++|.+. .+++..|.++++|++|++++|.+....+. .|..+++|++|++++|.++. +|.. .+
T Consensus 52 ~~L~~L~Ls~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~-lp~~--~l 120 (562)
T 3a79_B 52 PRTKALSLSQNSIS----ELRMPDISFLSELRVLRLSHNRIRSLDFH----VFLFNQDLEYLDVSHNRLQN-ISCC--PM 120 (562)
T ss_dssp TTCCEEECCSSCCC----CCCGGGTTTCTTCCEEECCSCCCCEECTT----TTTTCTTCCEEECTTSCCCE-ECSC--CC
T ss_pred CCcCEEECCCCCcc----ccChhhhccCCCccEEECCCCCCCcCCHH----HhCCCCCCCEEECCCCcCCc-cCcc--cc
Confidence 57888889888887 56667788888888888888888875555 57778888888888887764 3332 56
Q ss_pred CCCCEEEcCCCCCCCc-cchhhhccCCCCceeecCCCC
Q 045865 100 SSLRSLNLLWNRLEGS-IDVKELHNFTNLEYLTLESSS 136 (225)
Q Consensus 100 ~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~l~l~~~~ 136 (225)
++|++|++++|.+... .|. .+..+++|+.|++++|.
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~-~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCK-EFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCG-GGGGCTTCCEEEEECSB
T ss_pred ccCCEEECCCCCccccCchH-hhcccCcccEEecCCCc
Confidence 6666666666666521 122 45555555555544443
No 77
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=1.4e-18 Score=128.20 Aligned_cols=154 Identities=18% Similarity=0.333 Sum_probs=126.4
Q ss_pred cCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccC
Q 045865 45 TPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNF 124 (225)
Q Consensus 45 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l 124 (225)
..+++|+.|++++|.+.. .+. +..+++|++|++++|.++. +..+..+++|++|++++|.+.+..+. .+..+
T Consensus 41 ~~l~~L~~L~l~~n~i~~-l~~-----l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l 111 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD-LTG-----IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIP-NLSGL 111 (197)
T ss_dssp HHHHTCCEEEEESSCCSC-CTT-----GGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSC-CCTTC
T ss_pred hhcCCccEEeccCCCccC-hHH-----HhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccCh-hhcCC
Confidence 446789999999999985 443 7889999999999997765 34788899999999999999754554 78889
Q ss_pred CCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccc-cccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCC
Q 045865 125 TNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCE-VNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPS 203 (225)
Q Consensus 125 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~ 203 (225)
++|+.|++++|.+.+..+..+.. +++|+.|++++|. ++ ..+ .+.++++|+.|++++|++.. ++ .+.. +++
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~-l~~L~~L~L~~n~~i~-~~~--~l~~l~~L~~L~l~~n~i~~---~~-~l~~-l~~ 182 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINT-LPKVNSIDLSYNGAIT-DIM--PLKTLPELKSLNIQFDGVHD---YR-GIED-FPK 182 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTT-CSSCCEEECCSCTBCC-CCG--GGGGCSSCCEEECTTBCCCC---CT-TGGG-CSS
T ss_pred CCCCEEEecCCccCcHhHHHHhh-CCCCCEEEccCCCCcc-ccH--hhcCCCCCCEEECCCCCCcC---hH-Hhcc-CCC
Confidence 99999999999998777888888 9999999999998 65 443 58889999999999997633 33 5777 999
Q ss_pred CcEEEccCCcCCC
Q 045865 204 LKYLLLSYSTLGT 216 (225)
Q Consensus 204 L~~L~l~~n~l~~ 216 (225)
|+.|++++|++.+
T Consensus 183 L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 183 LNQLYAFSQTIGG 195 (197)
T ss_dssp CCEEEECBC----
T ss_pred CCEEEeeCcccCC
Confidence 9999999999874
No 78
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=8.3e-19 Score=138.62 Aligned_cols=183 Identities=21% Similarity=0.171 Sum_probs=142.1
Q ss_pred ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865 21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 100 (225)
Q Consensus 21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~ 100 (225)
.++..+++.+.+. +.....+..+++|++|++++|.+....+. .+..+++|++|++++|.+++..+ +..++
T Consensus 11 ~l~i~~ls~~~l~----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~ 80 (317)
T 3o53_A 11 RYKIEKVTDSSLK----QALASLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYETLD--LESLS 80 (317)
T ss_dssp EEEEESCCTTTHH----HHHHHHHTTGGGCSEEECTTSCCCCCCHH----HHTTCTTCCEEECTTSCCEEEEE--ETTCT
T ss_pred ceeEeeccccchh----hhHHHHhccCCCCCEEECcCCccCcCCHH----HhhCCCcCCEEECCCCcCCcchh--hhhcC
Confidence 4566778887776 66777778889999999999999986666 68999999999999999976544 78889
Q ss_pred CCCEEEcCCCCCCCccch-h---------------hhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEecccccccc
Q 045865 101 SLRSLNLLWNRLEGSIDV-K---------------ELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNG 164 (225)
Q Consensus 101 ~L~~L~l~~n~~~~~~~~-~---------------~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 164 (225)
+|++|++++|.+. .++. . ....+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++
T Consensus 81 ~L~~L~Ls~n~l~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 81 TLRTLDLNNNYVQ-ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDT 158 (317)
T ss_dssp TCCEEECCSSEEE-EEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGG-GSSEEEEECTTSCCCE
T ss_pred CCCEEECcCCccc-cccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhc-cCCCCEEECCCCCCCc
Confidence 9999999988775 2221 0 1123567888899999887655556666 8999999999999986
Q ss_pred ccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccch
Q 045865 165 VVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSR 220 (225)
Q Consensus 165 ~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~ 220 (225)
..+...+..+++|+.|++++|++... + .... +++|+.|++++|++++.++.
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~---~-~~~~-l~~L~~L~Ls~N~l~~l~~~ 209 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDV---K-GQVV-FAKLKTLDLSSNKLAFMGPE 209 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEE---E-CCCC-CTTCCEEECCSSCCCEECGG
T ss_pred ccHHHHhhccCcCCEEECCCCcCccc---c-cccc-cccCCEEECCCCcCCcchhh
Confidence 65552335789999999999976332 2 2334 89999999999999976554
No 79
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.77 E-value=1.5e-18 Score=146.56 Aligned_cols=185 Identities=18% Similarity=0.200 Sum_probs=104.3
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhH--Hhhh
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSIL--SSLT 97 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~--~~l~ 97 (225)
+.+++|++++|.+. .++...+.++++|++|++++|.+.+..+.. ...+..+++|++|++++|.++...+ ..+.
T Consensus 310 ~~L~~L~l~~n~l~----~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 384 (549)
T 2z81_A 310 EKVKRITVENSKVF----LVPCSFSQHLKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384 (549)
T ss_dssp TTCCEEEEESSCCC----CCCHHHHHHCTTCCEEECCSSCCCHHHHHH-HTCTTSSTTCCEEECTTSCCCCHHHHHHHGG
T ss_pred ccceEEEeccCccc----cCCHHHHhcCccccEEEccCCccccccccc-hhhhhccccCcEEEccCCcccccccchhhhh
Confidence 35666677766665 445555556777777777777776533320 0024566777777777777765432 4466
Q ss_pred cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHH------------------HhhCCCCCEEeccc
Q 045865 98 HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSI------------------ASIFPSLKNLSMSF 159 (225)
Q Consensus 98 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~------------------~~~~~~L~~L~l~~ 159 (225)
.+++|++|++++|.+. .+|. .+..+++|+.|++++|.+.. ++..+ .. +++|+.|++++
T Consensus 385 ~l~~L~~L~Ls~N~l~-~lp~-~~~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~-l~~L~~L~Ls~ 460 (549)
T 2z81_A 385 TLKNLTSLDISRNTFH-PMPD-SCQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLF-LPRLQELYISR 460 (549)
T ss_dssp GCTTCCEEECTTCCCC-CCCS-CCCCCTTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCC-CTTCCEEECCS
T ss_pred cCCCCCEEECCCCCCc-cCCh-hhcccccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhccc-CChhcEEECCC
Confidence 6777777777777765 5554 45555666666666665542 11110 12 45555555555
Q ss_pred cccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccc
Q 045865 160 CEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSS 219 (225)
Q Consensus 160 n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~ 219 (225)
|.++ .+|. ...+++|+.|++++|++ .+..+..+.. +++|+.|++++|++++..|
T Consensus 461 N~l~-~ip~--~~~l~~L~~L~Ls~N~l--~~~~~~~~~~-l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 461 NKLK-TLPD--ASLFPVLLVMKISRNQL--KSVPDGIFDR-LTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SCCS-SCCC--GGGCTTCCEEECCSSCC--CCCCTTGGGG-CTTCCEEECCSSCBCCCHH
T ss_pred CccC-cCCC--cccCccCCEEecCCCcc--CCcCHHHHhc-CcccCEEEecCCCccCCCc
Confidence 5554 3333 23455566666666633 2333334555 6666666666666665555
No 80
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=3.4e-19 Score=157.68 Aligned_cols=68 Identities=25% Similarity=0.305 Sum_probs=36.3
Q ss_pred CCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865 151 SLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL 222 (225)
Q Consensus 151 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~ 222 (225)
+|+.|++++|.+.+..+. .+..+++|+.|++++|++ .+..+..+.. +++|+.|++++|.+++..|..|
T Consensus 267 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i--~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~ 334 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSR-VFETLKDLKVLNLAYNKI--NKIADEAFYG-LDNLQVLNLSYNLLGELYSSNF 334 (844)
T ss_dssp CCCEEECTTCCCCEECSC-CSSSCCCCCEEEEESCCC--CEECTTTTTT-CSSCCEEEEESCCCSCCCSCSC
T ss_pred CccEEECCCCcccccChh-hhhcCCCCCEEECCCCcC--CCCChHHhcC-CCCCCEEECCCCCCCccCHHHh
Confidence 455555555554433333 555666666666666643 2233344555 6666666666666665555443
No 81
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=4.7e-18 Score=140.57 Aligned_cols=198 Identities=21% Similarity=0.171 Sum_probs=108.8
Q ss_pred ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHH-hcCCCCCEEECCCCCCChh----hHHh
Q 045865 21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERL-SRLNNLKMLNLSGNSFNNS----ILSS 95 (225)
Q Consensus 21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~----~~~~ 95 (225)
++++|++++|++...++...+..+..+++|++|++++|.+....+......+ ...++|++|++++|.++.. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 4666666666666444444555666666777777776666543333211111 1244566666666666542 2444
Q ss_pred hhcCCCCCEEEcCCCCCCCccchhhhc-----cCCCCceeecCCCCCcHH----HHHHHHhhCCCCCEEecccccccccc
Q 045865 96 LTHLSSLRSLNLLWNRLEGSIDVKELH-----NFTNLEYLTLESSSLHIS----LLQSIASIFPSLKNLSMSFCEVNGVV 166 (225)
Q Consensus 96 l~~l~~L~~L~l~~n~~~~~~~~~~~~-----~l~~L~~l~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~ 166 (225)
+..+++|++|++++|.+.+..+. .+. ..++|+.|++++|.+.+. ++..+.. +++|++|++++|.+++..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVR-VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS-KASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHH-HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHH-CTTCCEEECCSSBCHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHH-HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHh-CCCccEEeccCCcCChHH
Confidence 55566677777766665422111 221 234666777776666542 3445555 677777777777665321
Q ss_pred c----cCCCCCCCCCcEEEccCCccccch--hHHHHHhhcCCCCcEEEccCCcCCCccchh
Q 045865 167 R----GQGFPHFKSLEHFDMRFARIALNT--SFLQIIGESMPSLKYLLLSYSTLGTNSSRI 221 (225)
Q Consensus 167 ~----~~~~~~~~~L~~l~l~~n~i~~~~--~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~ 221 (225)
. ...+..+++|+.|++++|++...+ .++..+.. +++|+.|++++|.+++..+..
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CTTCCEEECTTCCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhh-CCCcceEECCCCCCchHHHHH
Confidence 1 112334666777777777442211 15556666 777777777777766544433
No 82
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=2.2e-19 Score=153.70 Aligned_cols=139 Identities=23% Similarity=0.307 Sum_probs=113.5
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~ 98 (225)
+..+++|+|++|++. .+++..|.++++|++|++++|.|....+. .|..+++|++|++++|.++...+..|..
T Consensus 51 p~~~~~LdLs~N~i~----~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~----~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp CTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred CcCCCEEEeeCCCCC----CCCHHHHhCCCCCCEEECCCCcCCCcChh----HhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 357889999999987 77888889999999999999998875555 5888999999999999998877778889
Q ss_pred CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHH-HHHHHHhhCCCCCEEeccccccccccc
Q 045865 99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHIS-LLQSIASIFPSLKNLSMSFCEVNGVVR 167 (225)
Q Consensus 99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~ 167 (225)
+.+|++|++++|.+. .++...+..+++|+.|++++|.+... .+..+.. +++|+.|++++|.+++..+
T Consensus 123 L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 123 LSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-CTTCCEEECCSSCCCEECG
T ss_pred CCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhcc-chhhhhhcccCcccccccc
Confidence 999999999999887 55544688889999999999887642 3455666 8899999999998875433
No 83
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.76 E-value=1.7e-17 Score=137.64 Aligned_cols=106 Identities=22% Similarity=0.291 Sum_probs=49.5
Q ss_pred hcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCC
Q 045865 97 THLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKS 176 (225)
Q Consensus 97 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 176 (225)
..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+.+..+ +.. +++|+.|++++|.+++. . .+.++++
T Consensus 284 ~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~L~~n~l~~~~~--~~~-l~~L~~L~l~~n~l~~~--~-~l~~l~~ 354 (466)
T 1o6v_A 284 AGLTALTNLELNENQLE-DIS--PISNLKNLTYLTLYFNNISDISP--VSS-LTKLQRLFFYNNKVSDV--S-SLANLTN 354 (466)
T ss_dssp TTCTTCSEEECCSSCCS-CCG--GGGGCTTCSEEECCSSCCSCCGG--GGG-CTTCCEEECCSSCCCCC--G-GGTTCTT
T ss_pred cCCCccCeEEcCCCccc-Cch--hhcCCCCCCEEECcCCcCCCchh--hcc-CccCCEeECCCCccCCc--h-hhccCCC
Confidence 33444444444444433 121 13344445555555554443322 233 45555555555554432 1 3455555
Q ss_pred CcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCC
Q 045865 177 LEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGT 216 (225)
Q Consensus 177 L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~ 216 (225)
|+.+++++|++ .+..| +.. +++|+.|++++|++++
T Consensus 355 L~~L~l~~n~l--~~~~~--~~~-l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 355 INWLSAGHNQI--SDLTP--LAN-LTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCEEECCSSCC--CBCGG--GTT-CTTCCEEECCCEEEEC
T ss_pred CCEEeCCCCcc--Cccch--hhc-CCCCCEEeccCCcccC
Confidence 66666666633 22222 444 6666666666666655
No 84
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=1.7e-18 Score=129.88 Aligned_cols=153 Identities=17% Similarity=0.233 Sum_probs=128.2
Q ss_pred EEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCC
Q 045865 23 IALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL 102 (225)
Q Consensus 23 ~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L 102 (225)
+.++.+++++. .++... .+.+++|++++|.+....+. .|..+++|++|++++|.+....+..|..+++|
T Consensus 14 ~~v~c~~~~l~----~iP~~l---~~~l~~L~l~~n~i~~i~~~----~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L 82 (220)
T 2v9t_B 14 NIVDCRGKGLT----EIPTNL---PETITEIRLEQNTIKVIPPG----AFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82 (220)
T ss_dssp TEEECTTSCCS----SCCSSC---CTTCCEEECCSSCCCEECTT----SSTTCTTCCEEECCSSCCCEECTTTTTTCSSC
T ss_pred CEEEcCCCCcC----cCCCcc---CcCCCEEECCCCcCCCcCHh----HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC
Confidence 46788888776 444432 25789999999999875554 58889999999999999998888999999999
Q ss_pred CEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEc
Q 045865 103 RSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDM 182 (225)
Q Consensus 103 ~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l 182 (225)
++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+. .+..+++|+.+++
T Consensus 83 ~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L 159 (220)
T 2v9t_B 83 NSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD-LHNLNLLSLYDNKLQTIAKG-TFSPLRAIQTMHL 159 (220)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEEC
T ss_pred CEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCC-CCCCCEEECCCCcCCEECHH-HHhCCCCCCEEEe
Confidence 99999999998 666656788999999999999998666666777 99999999999999855544 7899999999999
Q ss_pred cCCcccc
Q 045865 183 RFARIAL 189 (225)
Q Consensus 183 ~~n~i~~ 189 (225)
++|++..
T Consensus 160 ~~N~~~c 166 (220)
T 2v9t_B 160 AQNPFIC 166 (220)
T ss_dssp CSSCEEC
T ss_pred CCCCcCC
Confidence 9997644
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=4e-19 Score=148.20 Aligned_cols=188 Identities=18% Similarity=0.119 Sum_probs=137.1
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHH------------HHHhcCCCCCEEECCCC
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGI------------ERLSRLNNLKMLNLSGN 86 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~------------~~~~~l~~L~~L~l~~~ 86 (225)
...++.|++++|.+.. .++ +..+++|++|++++|.+.+..+..-. .....+++|+.|++++|
T Consensus 57 l~~L~~L~Ls~N~l~~----~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N 130 (487)
T 3oja_A 57 FTKLELLNLSSNVLYE----TLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN 130 (487)
T ss_dssp CTTCCEEECTTSCCEE----EEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSS
T ss_pred CCCCCEEEeeCCCCCC----Ccc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCC
Confidence 4567778888877752 222 56667777777766665432110000 00123578889999999
Q ss_pred CCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhc-cCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccc
Q 045865 87 SFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELH-NFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGV 165 (225)
Q Consensus 87 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 165 (225)
.+++..+..+..+++|+.|++++|.+.+..+. .+. .+++|+.|++++|.+.+. + .... +++|+.|++++|.+++
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~-l~~L~~L~Ls~N~l~~- 205 (487)
T 3oja_A 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-ELAASSDTLEHLNLQYNFIYDV-K-GQVV-FAKLKTLDLSSNKLAF- 205 (487)
T ss_dssp CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG-GGGGGTTTCCEEECTTSCCCEE-E-CCCC-CTTCCEEECCSSCCCE-
T ss_pred CCCCCCchhhcCCCCCCEEECCCCCCCCcChH-HHhhhCCcccEEecCCCccccc-c-cccc-CCCCCEEECCCCCCCC-
Confidence 99887787888899999999999999855554 554 789999999999998754 2 2234 7899999999999985
Q ss_pred cccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCC-Cccchhh
Q 045865 166 VRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLG-TNSSRIL 222 (225)
Q Consensus 166 ~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~-~~~~~~~ 222 (225)
.+. .+..+++|+.|++++|++. .+|..++. +++|+.|++++|+++ +.+|.++
T Consensus 206 ~~~-~~~~l~~L~~L~Ls~N~l~---~lp~~l~~-l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 206 MGP-EFQSAAGVTWISLRNNKLV---LIEKALRF-SQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp ECG-GGGGGTTCSEEECTTSCCC---EECTTCCC-CTTCCEEECTTCCBCHHHHHHHH
T ss_pred CCH-hHcCCCCccEEEecCCcCc---ccchhhcc-CCCCCEEEcCCCCCcCcchHHHH
Confidence 455 4888999999999999663 46767777 899999999999998 5555554
No 86
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.76 E-value=1.2e-17 Score=138.48 Aligned_cols=174 Identities=18% Similarity=0.271 Sum_probs=145.4
Q ss_pred CcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhh
Q 045865 18 TTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 97 (225)
Q Consensus 18 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~ 97 (225)
....++.|++++|.+.. +.+ +..+++|++|++++|.+... + .+..+++|++|++++|.+.+..+ +.
T Consensus 197 ~l~~L~~L~l~~n~l~~----~~~--~~~l~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 197 KLTNLESLIATNNQISD----ITP--LGILTNLDELSLNGNQLKDI-G-----TLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp GCTTCSEEECCSSCCCC----CGG--GGGCTTCCEEECCSSCCCCC-G-----GGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred cCCCCCEEEecCCcccc----ccc--ccccCCCCEEECCCCCcccc-h-----hhhcCCCCCEEECCCCccccchh--hh
Confidence 45689999999999873 333 67799999999999998873 3 37899999999999999987544 88
Q ss_pred cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCC
Q 045865 98 HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSL 177 (225)
Q Consensus 98 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 177 (225)
.+++|+.|++++|.+. ..+ .+..+++|+.|++++|.+.+..+ +.. +++|+.|++++|.+++..+ +..+++|
T Consensus 263 ~l~~L~~L~l~~n~l~-~~~--~~~~l~~L~~L~L~~n~l~~~~~--~~~-l~~L~~L~L~~n~l~~~~~---~~~l~~L 333 (466)
T 1o6v_A 263 GLTKLTELKLGANQIS-NIS--PLAGLTALTNLELNENQLEDISP--ISN-LKNLTYLTLYFNNISDISP---VSSLTKL 333 (466)
T ss_dssp TCTTCSEEECCSSCCC-CCG--GGTTCTTCSEEECCSSCCSCCGG--GGG-CTTCSEEECCSSCCSCCGG---GGGCTTC
T ss_pred cCCCCCEEECCCCccC-ccc--cccCCCccCeEEcCCCcccCchh--hcC-CCCCCEEECcCCcCCCchh---hccCccC
Confidence 8999999999999987 444 37788999999999999875433 566 9999999999999986543 6789999
Q ss_pred cEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccc
Q 045865 178 EHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSS 219 (225)
Q Consensus 178 ~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~ 219 (225)
+.|++++|++... ..+.. +++|+.|++++|++++..|
T Consensus 334 ~~L~l~~n~l~~~----~~l~~-l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 334 QRLFFYNNKVSDV----SSLAN-LTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp CEEECCSSCCCCC----GGGTT-CTTCCEEECCSSCCCBCGG
T ss_pred CEeECCCCccCCc----hhhcc-CCCCCEEeCCCCccCccch
Confidence 9999999976332 35777 9999999999999998877
No 87
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=2.7e-18 Score=129.61 Aligned_cols=158 Identities=20% Similarity=0.243 Sum_probs=125.1
Q ss_pred CCcccCCCceeecCCcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEEC
Q 045865 4 ATDCCQWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNL 83 (225)
Q Consensus 4 ~~~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l 83 (225)
.++.|.|.++.|. ++++. .++... .++|++|++++|.+....+. .+..+++|++|++
T Consensus 15 ~~~~Cs~~~v~c~------------~~~l~----~ip~~~---~~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L 71 (229)
T 3e6j_A 15 SQCSCSGTTVDCR------------SKRHA----SVPAGI---PTNAQILYLHDNQITKLEPG----VFDSLINLKELYL 71 (229)
T ss_dssp TTCEEETTEEECT------------TSCCS----SCCSCC---CTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEEC
T ss_pred CCCEEeCCEeEcc------------CCCcC----ccCCCC---CCCCCEEEcCCCccCccCHH----HhhCccCCcEEEC
Confidence 4556666666665 44444 333322 26788999999999886666 5888999999999
Q ss_pred CCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccc
Q 045865 84 SGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163 (225)
Q Consensus 84 ~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 163 (225)
++|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+. .+|..+.. +++|+.|++++|.++
T Consensus 72 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 72 GSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIER-LTHLTHLALDQNQLK 148 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGG-CTTCSEEECCSSCCC
T ss_pred CCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccc-ccCccccc-CCCCCEEECCCCcCC
Confidence 999998766677888999999999999987 555546788999999999999987 55666676 999999999999998
Q ss_pred cccccCCCCCCCCCcEEEccCCccc
Q 045865 164 GVVRGQGFPHFKSLEHFDMRFARIA 188 (225)
Q Consensus 164 ~~~~~~~~~~~~~L~~l~l~~n~i~ 188 (225)
.. +...+..+++|+.+++++|++.
T Consensus 149 ~~-~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 149 SI-PHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CC-CTTTTTTCTTCCEEECTTSCBC
T ss_pred cc-CHHHHhCCCCCCEEEeeCCCcc
Confidence 44 4337899999999999999764
No 88
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=3.4e-18 Score=128.24 Aligned_cols=154 Identities=20% Similarity=0.235 Sum_probs=128.3
Q ss_pred EEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCC
Q 045865 23 IALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL 102 (225)
Q Consensus 23 ~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L 102 (225)
+.++++++.+. .++... .+.+++|++++|.+....+.. .+..+++|++|++++|.++...+..+..+++|
T Consensus 14 ~~l~~s~n~l~----~iP~~~---~~~~~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 14 TTVDCSNQKLN----KIPEHI---PQYTAELRLNNNEFTVLEATG---IFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83 (220)
T ss_dssp TEEECCSSCCS----SCCSCC---CTTCSEEECCSSCCCEECCCC---CGGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CEeEeCCCCcc----cCccCC---CCCCCEEEcCCCcCCccCchh---hhccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence 47899999887 454432 235689999999998754432 47889999999999999998777789999999
Q ss_pred CEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEc
Q 045865 103 RSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDM 182 (225)
Q Consensus 103 ~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l 182 (225)
++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+. .+..+++|+.+++
T Consensus 84 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L 160 (220)
T 2v70_A 84 NEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG-LSSVRLLSLYDNQITTVAPG-AFDTLHSLSTLNL 160 (220)
T ss_dssp CEEECCSSCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTT-CTTCSEEECTTSCCCCBCTT-TTTTCTTCCEEEC
T ss_pred CEEECCCCccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCC-CccCCEEECCCCcCCEECHH-HhcCCCCCCEEEe
Confidence 99999999997 555547889999999999999998666666777 99999999999999866666 8999999999999
Q ss_pred cCCcccc
Q 045865 183 RFARIAL 189 (225)
Q Consensus 183 ~~n~i~~ 189 (225)
++|++..
T Consensus 161 ~~N~l~c 167 (220)
T 2v70_A 161 LANPFNC 167 (220)
T ss_dssp CSCCEEC
T ss_pred cCcCCcC
Confidence 9997643
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.75 E-value=5.2e-18 Score=136.40 Aligned_cols=191 Identities=19% Similarity=0.177 Sum_probs=140.8
Q ss_pred eeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCC-CCCEEECCCCCCChhhHHhhhcC----
Q 045865 25 LDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLN-NLKMLNLSGNSFNNSILSSLTHL---- 99 (225)
Q Consensus 25 l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~l~~l---- 99 (225)
..++++++. ...+..+...++|++|++++|.+....+...++.+..++ +|++|++++|.+....+..+..+
T Consensus 3 ~~ls~n~~~----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHPGS----NPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EECCCCTTC----CHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred cccccccch----HHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 567788776 455556666777999999999999877655555788898 99999999999987666666654
Q ss_pred -CCCCEEEcCCCCCCCccchh---hhccC-CCCceeecCCCCCcHHHHHHHHhh----CCCCCEEecccccccccccc--
Q 045865 100 -SSLRSLNLLWNRLEGSIDVK---ELHNF-TNLEYLTLESSSLHISLLQSIASI----FPSLKNLSMSFCEVNGVVRG-- 168 (225)
Q Consensus 100 -~~L~~L~l~~n~~~~~~~~~---~~~~l-~~L~~l~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~n~~~~~~~~-- 168 (225)
++|++|++++|.+.+..+.. .+..+ ++|+.|++++|.+.+..+..+... .++|+.|++++|.+++....
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 89999999999987433321 23344 799999999999886555444331 25999999999998743322
Q ss_pred -CCCCCCC-CCcEEEccCCccccch--hHHHHHhhcC-CCCcEEEccCCcCCCccch
Q 045865 169 -QGFPHFK-SLEHFDMRFARIALNT--SFLQIIGESM-PSLKYLLLSYSTLGTNSSR 220 (225)
Q Consensus 169 -~~~~~~~-~L~~l~l~~n~i~~~~--~~~~~l~~~~-~~L~~L~l~~n~l~~~~~~ 220 (225)
..+...+ +|+.|++++|++...+ .+...+.. + ++|+.|++++|.+++....
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~~L~~L~Ls~N~i~~~~~~ 214 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS-IPASVTSLDLSANLLGLKSYA 214 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHT-SCTTCCEEECTTSCGGGSCHH
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHh-CCCCCCEEECCCCCCChhHHH
Confidence 1334454 8999999999663322 33445555 6 5999999999999975443
No 90
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=128.00 Aligned_cols=157 Identities=18% Similarity=0.209 Sum_probs=130.4
Q ss_pred ccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhH-HhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCc
Q 045865 50 LESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSIL-SSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLE 128 (225)
Q Consensus 50 L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 128 (225)
-++++++++.+.. +|. .+ .+.+++|++++|.++...+ ..+..+++|++|++++|.+. .++...+..+++|+
T Consensus 13 ~~~l~~s~n~l~~-iP~----~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~ 84 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPE----HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVN 84 (220)
T ss_dssp TTEEECCSSCCSS-CCS----CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCC
T ss_pred CCEeEeCCCCccc-Ccc----CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCC
Confidence 3589999999877 554 22 4577999999999988644 45789999999999999998 55555889999999
Q ss_pred eeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEE
Q 045865 129 YLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLL 208 (225)
Q Consensus 129 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~ 208 (225)
.|++++|.+.+..+..+.. +++|+.|++++|.+++..+. .+..+++|+.|++++|++ .+..|..+.. +++|+.|+
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l--~~~~~~~~~~-l~~L~~L~ 159 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKG-LESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQI--TTVAPGAFDT-LHSLSTLN 159 (220)
T ss_dssp EEECCSSCCCCCCGGGGTT-CSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCC--CCBCTTTTTT-CTTCCEEE
T ss_pred EEECCCCccCccCHhHhcC-CcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcC--CEECHHHhcC-CCCCCEEE
Confidence 9999999998665566666 99999999999999966666 899999999999999955 4444677888 99999999
Q ss_pred ccCCcCCCccc
Q 045865 209 LSYSTLGTNSS 219 (225)
Q Consensus 209 l~~n~l~~~~~ 219 (225)
+++|+++...+
T Consensus 160 L~~N~l~c~c~ 170 (220)
T 2v70_A 160 LLANPFNCNCY 170 (220)
T ss_dssp CCSCCEECSGG
T ss_pred ecCcCCcCCCc
Confidence 99999987654
No 91
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=1e-18 Score=138.84 Aligned_cols=181 Identities=16% Similarity=0.172 Sum_probs=120.6
Q ss_pred ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865 21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 100 (225)
Q Consensus 21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~ 100 (225)
+++.++++++.+. .++... .+++++|++++|.+....+. .+..+++|++|++++|.++...+..+..++
T Consensus 34 ~l~~l~~~~~~l~----~ip~~~---~~~l~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 102 (332)
T 2ft3_A 34 HLRVVQCSDLGLK----AVPKEI---SPDTTLLDLQNNDISELRKD----DFKGLQHLYALVLVNNKISKIHEKAFSPLR 102 (332)
T ss_dssp ETTEEECCSSCCS----SCCSCC---CTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECGGGSTTCT
T ss_pred cCCEEECCCCCcc----ccCCCC---CCCCeEEECCCCcCCccCHh----HhhCCCCCcEEECCCCccCccCHhHhhCcC
Confidence 5678999999886 455433 36899999999999876565 589999999999999999988788999999
Q ss_pred CCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEecccccc------------------
Q 045865 101 SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEV------------------ 162 (225)
Q Consensus 101 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~------------------ 162 (225)
+|++|++++|.+. .+|. .+. ++|++|++++|.+....+..+.. +++|+.|++++|.+
T Consensus 103 ~L~~L~L~~n~l~-~l~~-~~~--~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L 177 (332)
T 2ft3_A 103 KLQKLYISKNHLV-EIPP-NLP--SSLVELRIHDNRIRKVPKGVFSG-LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL 177 (332)
T ss_dssp TCCEEECCSSCCC-SCCS-SCC--TTCCEEECCSSCCCCCCSGGGSS-CSSCCEEECCSCCCBGGGSCTTSSCSCCCSCC
T ss_pred CCCEEECCCCcCC-ccCc-ccc--ccCCEEECCCCccCccCHhHhCC-CccCCEEECCCCccccCCCCcccccCCccCEE
Confidence 9999999999886 4443 111 44555555555544222222333 44444444444443
Q ss_pred ----------------------------ccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcC
Q 045865 163 ----------------------------NGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTL 214 (225)
Q Consensus 163 ----------------------------~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l 214 (225)
++..+. .+..+++|+.|++++|++ .+..+..+.. +++|+.|++++|++
T Consensus 178 ~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~L~~N~l--~~~~~~~~~~-l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 178 RISEAKLTGIPKDLPETLNELHLDHNKIQAIELE-DLLRYSKLYRLGLGHNQI--RMIENGSLSF-LPTLRELHLDNNKL 253 (332)
T ss_dssp BCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTT-SSTTCTTCSCCBCCSSCC--CCCCTTGGGG-CTTCCEEECCSSCC
T ss_pred ECcCCCCCccCccccCCCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcC--CcCChhHhhC-CCCCCEEECCCCcC
Confidence 322222 455666777777777744 2222334566 77788888888877
Q ss_pred CCccchhh
Q 045865 215 GTNSSRIL 222 (225)
Q Consensus 215 ~~~~~~~~ 222 (225)
+ .+|..+
T Consensus 254 ~-~lp~~l 260 (332)
T 2ft3_A 254 S-RVPAGL 260 (332)
T ss_dssp C-BCCTTG
T ss_pred e-ecChhh
Confidence 7 455444
No 92
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=1.5e-18 Score=139.62 Aligned_cols=178 Identities=21% Similarity=0.212 Sum_probs=134.9
Q ss_pred EEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHh-cCCCCCEEECCCCCCChhhHHhhhcCCC
Q 045865 23 IALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLS-RLNNLKMLNLSGNSFNNSILSSLTHLSS 101 (225)
Q Consensus 23 ~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~l~~l~~ 101 (225)
+.++.+++++. .++... .+.++.|++++|.+....+. .+. .+++|++|++++|.+....+..|..+++
T Consensus 21 ~~l~c~~~~l~----~iP~~~---~~~l~~L~Ls~N~l~~l~~~----~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~ 89 (361)
T 2xot_A 21 NILSCSKQQLP----NVPQSL---PSYTALLDLSHNNLSRLRAE----WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89 (361)
T ss_dssp TEEECCSSCCS----SCCSSC---CTTCSEEECCSSCCCEECTT----SSSSCCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CEEEeCCCCcC----ccCccC---CCCCCEEECCCCCCCccChh----hhhhcccccCEEECCCCcCCccChhhccCCCC
Confidence 46888888876 444432 23578899999998875554 455 8899999999999998877778888999
Q ss_pred CCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCC---CCCCCCc
Q 045865 102 LRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGF---PHFKSLE 178 (225)
Q Consensus 102 L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~---~~~~~L~ 178 (225)
|++|++++|.+. .++...+..+++|+.|++++|.+....+..+.. +++|+.|++++|.++. ++...+ ..+++|+
T Consensus 90 L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~-l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 90 LRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED-MAQLQKLYLSQNQISR-FPVELIKDGNKLPKLM 166 (361)
T ss_dssp CCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCS-CCGGGTC----CTTCC
T ss_pred CCEEECCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCC-cccCCEEECCCCcCCe-eCHHHhcCcccCCcCC
Confidence 999999999987 555547888899999999999987655666766 8999999999999884 444255 5688999
Q ss_pred EEEccCCccccchhHHHHHhhcCCC--CcEEEccCCcCCCc
Q 045865 179 HFDMRFARIALNTSFLQIIGESMPS--LKYLLLSYSTLGTN 217 (225)
Q Consensus 179 ~l~l~~n~i~~~~~~~~~l~~~~~~--L~~L~l~~n~l~~~ 217 (225)
.|++++|+|. ..-+..+.. ++. ++.|++.+|++.-.
T Consensus 167 ~L~L~~N~l~--~l~~~~~~~-l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 167 LLDLSSNKLK--KLPLTDLQK-LPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp EEECCSSCCC--CCCHHHHHH-SCHHHHTTEECCSSCEECC
T ss_pred EEECCCCCCC--ccCHHHhhh-ccHhhcceEEecCCCccCC
Confidence 9999999663 222345666 766 47899999988643
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=5.8e-19 Score=133.99 Aligned_cols=175 Identities=15% Similarity=0.167 Sum_probs=143.1
Q ss_pred cCceEEeeccccc-cccchhHHhhhhhcCCCCccEEEccC-CcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhh
Q 045865 19 TGRVIALDLSYIY-SGEYSWYLNASLFTPFQQLESLDLTQ-NKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL 96 (225)
Q Consensus 19 ~~~v~~l~l~~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l 96 (225)
..+++.|++++|. +. .+++..|.++++|++|++++ |.+....+. .|..+++|++|++++|.+++ .|. +
T Consensus 54 l~~L~~L~l~~n~~l~----~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~----~f~~l~~L~~L~l~~n~l~~-lp~-~ 123 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQ----QLESHSFYNLSKVTHIEIRNTRNLTYIDPD----ALKELPLLKFLGIFNTGLKM-FPD-L 123 (239)
T ss_dssp CTTCCEEEEECCSSCC----EECTTTEESCTTCCEEEEEEETTCCEECTT----SEECCTTCCEEEEEEECCCS-CCC-C
T ss_pred CCCCcEEeCCCCCCcc----eeCHhHcCCCcCCcEEECCCCCCeeEcCHH----HhCCCCCCCEEeCCCCCCcc-ccc-c
Confidence 4689999999997 76 67777899999999999998 999875544 57899999999999999987 444 7
Q ss_pred hcCCCCC---EEEcCCC-CCCCccchhhhccCCCCc-eeecCCCCCcHHHHHHHHhhCCCCCEEeccccc-cccccccCC
Q 045865 97 THLSSLR---SLNLLWN-RLEGSIDVKELHNFTNLE-YLTLESSSLHISLLQSIASIFPSLKNLSMSFCE-VNGVVRGQG 170 (225)
Q Consensus 97 ~~l~~L~---~L~l~~n-~~~~~~~~~~~~~l~~L~-~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~ 170 (225)
..+++|+ +|++++| .+. .++...+..+++|+ .+++++|.+. .++..... .++|+.|++++|. ++ .++...
T Consensus 124 ~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~-~~~L~~L~L~~n~~l~-~i~~~~ 199 (239)
T 2xwt_C 124 TKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFN-GTKLDAVYLNKNKYLT-VIDKDA 199 (239)
T ss_dssp TTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCC-EECTTTTT-TCEEEEEECTTCTTCC-EECTTT
T ss_pred ccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCc-ccCHhhcC-CCCCCEEEcCCCCCcc-cCCHHH
Confidence 7888888 9999999 886 66655788999999 9999999987 45555555 5789999999995 87 444448
Q ss_pred CCCC-CCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCc
Q 045865 171 FPHF-KSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYST 213 (225)
Q Consensus 171 ~~~~-~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~ 213 (225)
|..+ ++|+.+++++|++. .+|.. . +++|+.|++.++.
T Consensus 200 ~~~l~~~L~~L~l~~N~l~---~l~~~--~-~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 200 FGGVYSGPSLLDVSQTSVT---ALPSK--G-LEHLKELIARNTW 237 (239)
T ss_dssp TTTCSBCCSEEECTTCCCC---CCCCT--T-CTTCSEEECTTC-
T ss_pred hhccccCCcEEECCCCccc---cCChh--H-hccCceeeccCcc
Confidence 8999 99999999999763 33432 3 8899999998863
No 94
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=1.3e-17 Score=125.81 Aligned_cols=156 Identities=19% Similarity=0.205 Sum_probs=117.2
Q ss_pred ccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCce
Q 045865 50 LESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEY 129 (225)
Q Consensus 50 L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 129 (225)
.+.++.+++.+.. +|. .-.++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.
T Consensus 21 ~~~v~c~~~~l~~-ip~------~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~ 92 (229)
T 3e6j_A 21 GTTVDCRSKRHAS-VPA------GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTV 92 (229)
T ss_dssp TTEEECTTSCCSS-CCS------CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCEeEccCCCcCc-cCC------CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCE
Confidence 4567888777765 444 22378888899888888877778888888899999888886 555546778888888
Q ss_pred eecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEc
Q 045865 130 LTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLL 209 (225)
Q Consensus 130 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l 209 (225)
|++++|.+....+..+.. +++|+.|++++|.++ .+|. .+..+++|+.|++++|++. ...+..+.. +++|+.|++
T Consensus 93 L~Ls~N~l~~l~~~~~~~-l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~--~~~~~~~~~-l~~L~~L~l 166 (229)
T 3e6j_A 93 LDLGTNQLTVLPSAVFDR-LVHLKELFMCCNKLT-ELPR-GIERLTHLTHLALDQNQLK--SIPHGAFDR-LSSLTHAYL 166 (229)
T ss_dssp EECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCC-SCCT-TGGGCTTCSEEECCSSCCC--CCCTTTTTT-CTTCCEEEC
T ss_pred EECCCCcCCccChhHhCc-chhhCeEeccCCccc-ccCc-ccccCCCCCEEECCCCcCC--ccCHHHHhC-CCCCCEEEe
Confidence 889888887544444555 888888998888887 5666 6788888889999888653 222244666 888888999
Q ss_pred cCCcCCCccc
Q 045865 210 SYSTLGTNSS 219 (225)
Q Consensus 210 ~~n~l~~~~~ 219 (225)
.+|+++...+
T Consensus 167 ~~N~~~c~c~ 176 (229)
T 3e6j_A 167 FGNPWDCECR 176 (229)
T ss_dssp TTSCBCTTBG
T ss_pred eCCCccCCcc
Confidence 8888887654
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=1.8e-18 Score=133.23 Aligned_cols=170 Identities=18% Similarity=0.224 Sum_probs=130.3
Q ss_pred ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865 21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 100 (225)
Q Consensus 21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~ 100 (225)
.++.++++++.+. .+. .+..+++|++|++++|.+.. .+. +..+++|++|++++|.+++..+ +..++
T Consensus 20 ~l~~l~l~~~~i~----~~~--~~~~l~~L~~L~l~~n~i~~-l~~-----l~~l~~L~~L~L~~N~i~~~~~--l~~l~ 85 (263)
T 1xeu_A 20 NAVKQNLGKQSVT----DLV--SQKELSGVQNFNGDNSNIQS-LAG-----MQFFTNLKELHLSHNQISDLSP--LKDLT 85 (263)
T ss_dssp HHHHHHHTCSCTT----SEE--CHHHHTTCSEEECTTSCCCC-CTT-----GGGCTTCCEEECCSSCCCCCGG--GTTCS
T ss_pred HHHHHHhcCCCcc----ccc--chhhcCcCcEEECcCCCccc-chH-----HhhCCCCCEEECCCCccCCChh--hccCC
Confidence 3455677777765 233 35678889999999998876 343 7888999999999999987544 88899
Q ss_pred CCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEE
Q 045865 101 SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHF 180 (225)
Q Consensus 101 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l 180 (225)
+|++|++++|.+. .++. +.. .+|+.|++++|.+.+. ..+.. +++|+.|++++|.+++. + .+..+++|+.|
T Consensus 86 ~L~~L~L~~N~l~-~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~-l~~L~~L~Ls~N~i~~~-~--~l~~l~~L~~L 155 (263)
T 1xeu_A 86 KLEELSVNRNRLK-NLNG--IPS-ACLSRLFLDNNELRDT--DSLIH-LKNLEILSIRNNKLKSI-V--MLGFLSKLEVL 155 (263)
T ss_dssp SCCEEECCSSCCS-CCTT--CCC-SSCCEEECCSSCCSBS--GGGTT-CTTCCEEECTTSCCCBC-G--GGGGCTTCCEE
T ss_pred CCCEEECCCCccC-CcCc--ccc-CcccEEEccCCccCCC--hhhcC-cccccEEECCCCcCCCC-h--HHccCCCCCEE
Confidence 9999999999887 4442 223 8899999999988753 34566 89999999999998754 2 57788999999
Q ss_pred EccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccc
Q 045865 181 DMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSS 219 (225)
Q Consensus 181 ~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~ 219 (225)
++++|++... ..+.. +++|+.|++++|+++....
T Consensus 156 ~L~~N~i~~~----~~l~~-l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 156 DLHGNEITNT----GGLTR-LKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp ECTTSCCCBC----TTSTT-CCCCCEEEEEEEEEECCCE
T ss_pred ECCCCcCcch----HHhcc-CCCCCEEeCCCCcccCCcc
Confidence 9999966333 45677 8999999999999886643
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=9.2e-18 Score=125.91 Aligned_cols=154 Identities=12% Similarity=0.185 Sum_probs=126.6
Q ss_pred cEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCcee
Q 045865 51 ESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYL 130 (225)
Q Consensus 51 ~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l 130 (225)
+.++.+++.+.. +|. .+ .++++.|++++|.+....+..+..+++|+.|++++|.+. .+.+..+..+++|+.|
T Consensus 14 ~~v~c~~~~l~~-iP~----~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L 85 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPT----NL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSL 85 (220)
T ss_dssp TEEECTTSCCSS-CCS----SC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEE
T ss_pred CEEEcCCCCcCc-CCC----cc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEE
Confidence 578888888876 454 22 378999999999999877778999999999999999998 5444489999999999
Q ss_pred ecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEcc
Q 045865 131 TLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLS 210 (225)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~ 210 (225)
++++|.+....+..+.. +++|+.|++++|.+++..+. .|..+++|+.|++++|++ .+..+..+.. +++|+.|+++
T Consensus 86 ~Ls~N~l~~l~~~~f~~-l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l--~~~~~~~~~~-l~~L~~L~L~ 160 (220)
T 2v9t_B 86 VLYGNKITELPKSLFEG-LFSLQLLLLNANKINCLRVD-AFQDLHNLNLLSLYDNKL--QTIAKGTFSP-LRAIQTMHLA 160 (220)
T ss_dssp ECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCC--SCCCTTTTTT-CTTCCEEECC
T ss_pred ECCCCcCCccCHhHccC-CCCCCEEECCCCCCCEeCHH-HcCCCCCCCEEECCCCcC--CEECHHHHhC-CCCCCEEEeC
Confidence 99999998443344555 99999999999999866566 899999999999999966 3333445777 9999999999
Q ss_pred CCcCCCc
Q 045865 211 YSTLGTN 217 (225)
Q Consensus 211 ~n~l~~~ 217 (225)
+|++...
T Consensus 161 ~N~~~c~ 167 (220)
T 2v9t_B 161 QNPFICD 167 (220)
T ss_dssp SSCEECS
T ss_pred CCCcCCC
Confidence 9998653
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=1.3e-17 Score=122.89 Aligned_cols=150 Identities=19% Similarity=0.321 Sum_probs=125.4
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~ 98 (225)
..+++.|+++++.+. .++ .+..+++|++|++++|.+.. .+ .+..+++|++|++++|.++...+..+..
T Consensus 43 l~~L~~L~l~~n~i~----~l~--~l~~l~~L~~L~l~~n~~~~-~~-----~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 43 MNSLTYITLANINVT----DLT--GIEYAHNIKDLTINNIHATN-YN-----PISGLSNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HHTCCEEEEESSCCS----CCT--TGGGCTTCSEEEEESCCCSC-CG-----GGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred cCCccEEeccCCCcc----ChH--HHhcCCCCCEEEccCCCCCc-ch-----hhhcCCCCCEEEeECCccCcccChhhcC
Confidence 347899999999987 344 47889999999999997765 33 3788999999999999998877888999
Q ss_pred CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCC-CcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCC
Q 045865 99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSS-LHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSL 177 (225)
Q Consensus 99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 177 (225)
+++|++|++++|.+.+..+. .+..+++|+.|++++|. +.. .+ .+.. +++|+.|++++|.+++. + .+..+++|
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~-~~-~l~~-l~~L~~L~l~~n~i~~~-~--~l~~l~~L 183 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITD-IM-PLKT-LPELKSLNIQFDGVHDY-R--GIEDFPKL 183 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCCC-CG-GGGG-CSSCCEEECTTBCCCCC-T--TGGGCSSC
T ss_pred CCCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCCccc-cH-hhcC-CCCCCEEECCCCCCcCh-H--HhccCCCC
Confidence 99999999999999854554 88899999999999998 664 33 5666 99999999999999853 2 57889999
Q ss_pred cEEEccCCcc
Q 045865 178 EHFDMRFARI 187 (225)
Q Consensus 178 ~~l~l~~n~i 187 (225)
+.|++++|+|
T Consensus 184 ~~L~l~~N~i 193 (197)
T 4ezg_A 184 NQLYAFSQTI 193 (197)
T ss_dssp CEEEECBC--
T ss_pred CEEEeeCccc
Confidence 9999999965
No 98
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.72 E-value=6.6e-18 Score=144.53 Aligned_cols=169 Identities=19% Similarity=0.192 Sum_probs=131.6
Q ss_pred CCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCC
Q 045865 48 QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNL 127 (225)
Q Consensus 48 ~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 127 (225)
+.+++|++++|.|....+. .|..+++|++|++++|.++...+..|..+++|++|++++|.+. .++...+..+++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~----~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTC
T ss_pred cCCCEEEeeCCCCCCCCHH----HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCC
Confidence 3689999999999885555 6899999999999999999877888999999999999999997 6676578999999
Q ss_pred ceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccc-hhHHHHHhhcCCCCcE
Q 045865 128 EYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALN-TSFLQIIGESMPSLKY 206 (225)
Q Consensus 128 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~-~~~~~~l~~~~~~L~~ 206 (225)
++|++++|.+.+..+..+.. +++|+.|++++|.++.......+..+++|++|++++|++... ......+.+.......
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~-L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 205 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTT-CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCE
T ss_pred CEEECCCCcCCCCChhhhhc-CcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhh
Confidence 99999999987544445666 999999999999987543233778899999999999966321 1112233331223457
Q ss_pred EEccCCcCCCccchhh
Q 045865 207 LLLSYSTLGTNSSRIL 222 (225)
Q Consensus 207 L~l~~n~l~~~~~~~~ 222 (225)
++++.|.++...+..+
T Consensus 206 ~~ls~n~l~~i~~~~~ 221 (635)
T 4g8a_A 206 LDLSLNPMNFIQPGAF 221 (635)
T ss_dssp EECTTCCCCEECTTTT
T ss_pred hhcccCcccccCcccc
Confidence 8899998886655443
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=4.1e-17 Score=127.42 Aligned_cols=151 Identities=18% Similarity=0.309 Sum_probs=127.7
Q ss_pred cCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccC
Q 045865 45 TPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNF 124 (225)
Q Consensus 45 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l 124 (225)
..+++|++|++++|.+... +. +..+++|++|++++|.+++..+ +..+++|++|++++|.+. .++ .+..+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~~-----~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~--~l~~l 111 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-QG-----IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLS--SLKDL 111 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-TT-----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGG--GGTTC
T ss_pred hhcCcccEEEccCCCcccC-hh-----HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CCh--hhccC
Confidence 4577899999999999863 43 7889999999999999988544 889999999999999987 444 58889
Q ss_pred CCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCC
Q 045865 125 TNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSL 204 (225)
Q Consensus 125 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L 204 (225)
++|+.|++++|.+.+. ..+.. +++|+.|++++|.+++. . .+..+++|+.|++++|++... +. +.. +++|
T Consensus 112 ~~L~~L~L~~n~i~~~--~~l~~-l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~N~l~~~---~~-l~~-l~~L 180 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDI--NGLVH-LPQLESLYLGNNKITDI--T-VLSRLTKLDTLSLEDNQISDI---VP-LAG-LTKL 180 (291)
T ss_dssp TTCCEEECTTSCCCCC--GGGGG-CTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCCC---GG-GTT-CTTC
T ss_pred CCCCEEECCCCcCCCC--hhhcC-CCCCCEEEccCCcCCcc--h-hhccCCCCCEEEccCCccccc---hh-hcC-CCcc
Confidence 9999999999998753 45666 99999999999999854 3 688999999999999976332 22 777 9999
Q ss_pred cEEEccCCcCCCc
Q 045865 205 KYLLLSYSTLGTN 217 (225)
Q Consensus 205 ~~L~l~~n~l~~~ 217 (225)
+.|++++|.+++.
T Consensus 181 ~~L~L~~N~i~~l 193 (291)
T 1h6t_A 181 QNLYLSKNHISDL 193 (291)
T ss_dssp CEEECCSSCCCBC
T ss_pred CEEECCCCcCCCC
Confidence 9999999999964
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=1.8e-18 Score=138.49 Aligned_cols=201 Identities=13% Similarity=0.140 Sum_probs=144.9
Q ss_pred cCCCceeecCC---------cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCC
Q 045865 8 CQWERVECSNT---------TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNL 78 (225)
Q Consensus 8 c~~~~~~~~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L 78 (225)
|++..+.|... +..+++|++++|++. .+++.+|.++++|++|++++|.+.+.++.. .|..++++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~----~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~---~f~~L~~l 81 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR----VIQKGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLPKL 81 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS----EECTTSSTTCTTCCEEEEECCTTCCEECTT---SBCSCTTC
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC----CcCHHHHcCCCCCCEEECcCCCCCCccChh---Hhhcchhh
Confidence 66777888642 256899999999998 788889999999999999999987655543 46788888
Q ss_pred CE-EECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCC-CCCcHHHHHHHHhhCCCCCEEe
Q 045865 79 KM-LNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLES-SSLHISLLQSIASIFPSLKNLS 156 (225)
Q Consensus 79 ~~-L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~~~~L~~L~ 156 (225)
++ +.+..|.+....+..|..+++|++|++++|.+. .++...+.....+..+++.+ +.+.......+......++.|+
T Consensus 82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~ 160 (350)
T 4ay9_X 82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160 (350)
T ss_dssp CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred hhhhcccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhc
Confidence 76 556678898877888999999999999999987 44433555556677777755 3444222223333124678888
Q ss_pred ccccccccccccCCCCCCCCCcEEEccC-CccccchhHHH-HHhhcCCCCcEEEccCCcCCCccchhh
Q 045865 157 MSFCEVNGVVRGQGFPHFKSLEHFDMRF-ARIALNTSFLQ-IIGESMPSLKYLLLSYSTLGTNSSRIL 222 (225)
Q Consensus 157 l~~n~~~~~~~~~~~~~~~~L~~l~l~~-n~i~~~~~~~~-~l~~~~~~L~~L~l~~n~l~~~~~~~~ 222 (225)
+++|.++ .++. ......+|+.++++. |.+ ..+|. ++.. +++|+.|++++|+|+..++..|
T Consensus 161 L~~N~i~-~i~~-~~f~~~~L~~l~l~~~n~l---~~i~~~~f~~-l~~L~~LdLs~N~l~~lp~~~~ 222 (350)
T 4ay9_X 161 LNKNGIQ-EIHN-SAFNGTQLDELNLSDNNNL---EELPNDVFHG-ASGPVILDISRTRIHSLPSYGL 222 (350)
T ss_dssp CCSSCCC-EECT-TSSTTEEEEEEECTTCTTC---CCCCTTTTTT-EECCSEEECTTSCCCCCCSSSC
T ss_pred ccccccc-CCCh-hhccccchhHHhhccCCcc---cCCCHHHhcc-CcccchhhcCCCCcCccChhhh
Confidence 9998887 4555 333456788888875 433 44443 4566 8888999999998886655444
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=3.7e-17 Score=131.41 Aligned_cols=159 Identities=24% Similarity=0.263 Sum_probs=128.9
Q ss_pred ccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhh-cCCCCCEEEcCCCCCCCccchhhhccCCCCc
Q 045865 50 LESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT-HLSSLRSLNLLWNRLEGSIDVKELHNFTNLE 128 (225)
Q Consensus 50 L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 128 (225)
-+.++++++.+.. +|. .+ .+.++.|++++|.++...+..+. .+++|+.|++++|.+. .++...+..+++|+
T Consensus 20 ~~~l~c~~~~l~~-iP~----~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 20 SNILSCSKQQLPN-VPQ----SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLR 91 (361)
T ss_dssp TTEEECCSSCCSS-CCS----SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCC
T ss_pred CCEEEeCCCCcCc-cCc----cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCC
Confidence 3578999998877 554 12 45799999999999987777777 8999999999999998 55554789999999
Q ss_pred eeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHH----hhcCCCC
Q 045865 129 YLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQII----GESMPSL 204 (225)
Q Consensus 129 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l----~~~~~~L 204 (225)
.|++++|.+....+..+.. +++|+.|++++|.++...+. .|.++++|+.|++++|++. .+|..+ .. +++|
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~L~~N~l~---~l~~~~~~~~~~-l~~L 165 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSD-LQALEVLLLYNNHIVVVDRN-AFEDMAQLQKLYLSQNQIS---RFPVELIKDGNK-LPKL 165 (361)
T ss_dssp EEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCC---SCCGGGTC-----CTTC
T ss_pred EEECCCCcCCcCCHHHhCC-CcCCCEEECCCCcccEECHH-HhCCcccCCEEECCCCcCC---eeCHHHhcCccc-CCcC
Confidence 9999999998554455666 99999999999999865555 8999999999999999763 333332 45 8999
Q ss_pred cEEEccCCcCCCccchhh
Q 045865 205 KYLLLSYSTLGTNSSRIL 222 (225)
Q Consensus 205 ~~L~l~~n~l~~~~~~~~ 222 (225)
+.|+|++|+|++..+..+
T Consensus 166 ~~L~L~~N~l~~l~~~~~ 183 (361)
T 2xot_A 166 MLLDLSSNKLKKLPLTDL 183 (361)
T ss_dssp CEEECCSSCCCCCCHHHH
T ss_pred CEEECCCCCCCccCHHHh
Confidence 999999999997765544
No 102
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.70 E-value=1.7e-16 Score=131.36 Aligned_cols=171 Identities=18% Similarity=0.166 Sum_probs=106.4
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~ 98 (225)
...++.|++++|.+.. ++ +..+++|++|++++|.+.+. + +..+++|++|++++|.+++. + +..
T Consensus 63 l~~L~~L~Ls~n~l~~----~~---~~~l~~L~~L~Ls~N~l~~~--~-----~~~l~~L~~L~L~~N~l~~l-~--~~~ 125 (457)
T 3bz5_A 63 LTGLTKLICTSNNITT----LD---LSQNTNLTYLACDSNKLTNL--D-----VTPLTKLTYLNCDTNKLTKL-D--VSQ 125 (457)
T ss_dssp CTTCSEEECCSSCCSC----CC---CTTCTTCSEEECCSSCCSCC--C-----CTTCTTCCEEECCSSCCSCC-C--CTT
T ss_pred cCCCCEEEccCCcCCe----Ec---cccCCCCCEEECcCCCCcee--e-----cCCCCcCCEEECCCCcCCee-c--CCC
Confidence 3467777777777652 21 56667777777777766652 1 45666667777766666552 2 555
Q ss_pred CCCCCEEEcCCCCCCCccchh-------------------hhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccc
Q 045865 99 LSSLRSLNLLWNRLEGSIDVK-------------------ELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSF 159 (225)
Q Consensus 99 l~~L~~L~l~~n~~~~~~~~~-------------------~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 159 (225)
+++|++|++++|.+.+ ++.. .+..+++|+.|++++|.+.+. + +.. +++|+.|++++
T Consensus 126 l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l-~--l~~-l~~L~~L~l~~ 200 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTE-IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL-D--VSQ-NKLLNRLNCDT 200 (457)
T ss_dssp CTTCCEEECTTSCCSC-CCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC-C--CTT-CTTCCEEECCS
T ss_pred CCcCCEEECCCCccce-eccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee-c--ccc-CCCCCEEECcC
Confidence 6666666666666542 2100 233455666666666666542 2 444 66777777777
Q ss_pred cccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchh
Q 045865 160 CEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRI 221 (225)
Q Consensus 160 n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~ 221 (225)
|.+++. .+..+++|+.|++++|++. + +| ++. +++|+.|++++|++++..+..
T Consensus 201 N~l~~~----~l~~l~~L~~L~Ls~N~l~--~-ip--~~~-l~~L~~L~l~~N~l~~~~~~~ 252 (457)
T 3bz5_A 201 NNITKL----DLNQNIQLTFLDCSSNKLT--E-ID--VTP-LTQLTYFDCSVNPLTELDVST 252 (457)
T ss_dssp SCCSCC----CCTTCTTCSEEECCSSCCS--C-CC--CTT-CTTCSEEECCSSCCSCCCCTT
T ss_pred CcCCee----ccccCCCCCEEECcCCccc--c-cC--ccc-cCCCCEEEeeCCcCCCcCHHH
Confidence 766643 3667788888888888552 2 44 666 888888888888888765543
No 103
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.67 E-value=3.4e-16 Score=129.54 Aligned_cols=169 Identities=21% Similarity=0.163 Sum_probs=118.0
Q ss_pred CcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhh
Q 045865 18 TTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 97 (225)
Q Consensus 18 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~ 97 (225)
...+++.|+++++.+. .++ .+..+++|++|++++|.+.+. + +..+++|++|++++|.+++. + +.
T Consensus 40 ~l~~L~~L~Ls~n~l~----~~~--~l~~l~~L~~L~Ls~n~l~~~-~------~~~l~~L~~L~Ls~N~l~~~-~--~~ 103 (457)
T 3bz5_A 40 QLATLTSLDCHNSSIT----DMT--GIEKLTGLTKLICTSNNITTL-D------LSQNTNLTYLACDSNKLTNL-D--VT 103 (457)
T ss_dssp HHTTCCEEECCSSCCC----CCT--TGGGCTTCSEEECCSSCCSCC-C------CTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred HcCCCCEEEccCCCcc----cCh--hhcccCCCCEEEccCCcCCeE-c------cccCCCCCEEECcCCCCcee-e--cC
Confidence 3468999999999987 333 578899999999999999873 2 67899999999999999874 2 88
Q ss_pred cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEecccccccccccc---------
Q 045865 98 HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRG--------- 168 (225)
Q Consensus 98 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--------- 168 (225)
.+++|++|++++|.+.+ ++ +..+++|+.|++++|.+.+. + +.. +++|+.|++++|...+..+.
T Consensus 104 ~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l-~--l~~-l~~L~~L~l~~n~~~~~~~~~~l~~L~~L 175 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI-D--VSH-NTQLTELDCHLNKKITKLDVTPQTQLTTL 175 (457)
T ss_dssp TCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC-C--CTT-CTTCCEEECTTCSCCCCCCCTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee-c--ccc-CCcCCEEECCCCCcccccccccCCcCCEE
Confidence 89999999999999873 43 67788899999998887653 1 344 66666666666632222200
Q ss_pred ---------CCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCC
Q 045865 169 ---------QGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGT 216 (225)
Q Consensus 169 ---------~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~ 216 (225)
..+..+++|+.+++++|++... .++. +++|+.|++++|++++
T Consensus 176 ~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~-----~l~~-l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 176 DCSFNKITELDVSQNKLLNRLNCDTNNITKL-----DLNQ-NIQLTFLDCSSNKLTE 226 (457)
T ss_dssp ECCSSCCCCCCCTTCTTCCEEECCSSCCSCC-----CCTT-CTTCSEEECCSSCCSC
T ss_pred ECCCCccceeccccCCCCCEEECcCCcCCee-----cccc-CCCCCEEECcCCcccc
Confidence 0133444555555555533211 1444 6666666666666665
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.67 E-value=6.6e-17 Score=136.67 Aligned_cols=177 Identities=22% Similarity=0.234 Sum_probs=99.1
Q ss_pred CCCce-eecCCcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCC
Q 045865 9 QWERV-ECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNS 87 (225)
Q Consensus 9 ~~~~~-~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~ 87 (225)
.|.++ .|. ..+++.|++++|.+. .++... .++|++|++++|.+.. +| ..+++|+.|++++|.
T Consensus 49 ~~~~l~~C~--~~~L~~L~Ls~n~L~----~lp~~l---~~~L~~L~Ls~N~l~~-ip-------~~l~~L~~L~Ls~N~ 111 (571)
T 3cvr_A 49 AVSLLKECL--INQFSELQLNRLNLS----SLPDNL---PPQITVLEITQNALIS-LP-------ELPASLEYLDACDNR 111 (571)
T ss_dssp HHHHHHHHH--HTTCSEEECCSSCCS----CCCSCC---CTTCSEEECCSSCCSC-CC-------CCCTTCCEEECCSSC
T ss_pred hhhhccccc--cCCccEEEeCCCCCC----ccCHhH---cCCCCEEECcCCCCcc-cc-------cccCCCCEEEccCCC
Confidence 35555 454 236677777777665 333322 2456666666666553 22 124555555555555
Q ss_pred CChhhHHhhh------------------cCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhC
Q 045865 88 FNNSILSSLT------------------HLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIF 149 (225)
Q Consensus 88 l~~~~~~~l~------------------~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~ 149 (225)
+++ +|. +. .+++|+.|++++|.+. .+|. .+++|+.|++++|.+.+ +|. + .
T Consensus 112 l~~-ip~-l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l---~ 179 (571)
T 3cvr_A 112 LST-LPE-LPASLKHLDVDNNQLTMLPELPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-L---P 179 (571)
T ss_dssp CSC-CCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-C---C
T ss_pred CCC-cch-hhcCCCEEECCCCcCCCCCCcCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-h---h
Confidence 544 222 22 2344444555544444 2332 33455555665555543 222 1 2
Q ss_pred CCCCEEeccccccccccccCCCCCCCCC-------cEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865 150 PSLKNLSMSFCEVNGVVRGQGFPHFKSL-------EHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRIL 222 (225)
Q Consensus 150 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L-------~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~ 222 (225)
++|+.|++++|.++ .+|. +.. +| +.|++++|+| ..+|..+.. +++|+.|++++|+|++.+|..+
T Consensus 180 ~~L~~L~Ls~N~L~-~lp~--~~~--~L~~~~~~L~~L~Ls~N~l---~~lp~~l~~-l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 180 ESLEALDVSTNLLE-SLPA--VPV--RNHHSEETEIFFRCRENRI---THIPENILS-LDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp TTCCEEECCSSCCS-SCCC--CC----------CCEEEECCSSCC---CCCCGGGGG-SCTTEEEECCSSSCCHHHHHHH
T ss_pred CCCCEEECcCCCCC-chhh--HHH--hhhcccccceEEecCCCcc---eecCHHHhc-CCCCCEEEeeCCcCCCcCHHHH
Confidence 55666666666665 3333 222 55 8888888865 356777888 9999999999999998888766
Q ss_pred c
Q 045865 223 H 223 (225)
Q Consensus 223 ~ 223 (225)
.
T Consensus 251 ~ 251 (571)
T 3cvr_A 251 S 251 (571)
T ss_dssp H
T ss_pred H
Confidence 4
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=3.2e-16 Score=133.60 Aligned_cols=152 Identities=19% Similarity=0.317 Sum_probs=128.4
Q ss_pred hcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhcc
Q 045865 44 FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHN 123 (225)
Q Consensus 44 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 123 (225)
+..+++|+.|++++|.+.. .+. +..+++|+.|+|++|.+.+..+ +..+++|+.|++++|.+. .++ .+..
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~~-----l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~--~l~~ 107 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQG-----IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS--SLKD 107 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CTT-----GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT--TSTT
T ss_pred hhcCCCCCEEECcCCCCCC-ChH-----HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh--hhcc
Confidence 3457788999999999876 343 7899999999999999988554 889999999999999987 444 6888
Q ss_pred CCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCC
Q 045865 124 FTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPS 203 (225)
Q Consensus 124 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~ 203 (225)
+++|+.|+|++|.+.+. ..+.. +++|+.|++++|.+++. . .+..+++|+.|++++|++ .+..+ +.. +++
T Consensus 108 l~~L~~L~Ls~N~l~~l--~~l~~-l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l--~~~~~--l~~-l~~ 176 (605)
T 1m9s_A 108 LKKLKSLSLEHNGISDI--NGLVH-LPQLESLYLGNNKITDI--T-VLSRLTKLDTLSLEDNQI--SDIVP--LAG-LTK 176 (605)
T ss_dssp CTTCCEEECTTSCCCCC--GGGGG-CTTCSEEECCSSCCCCC--G-GGGSCTTCSEEECCSSCC--CCCGG--GTT-CTT
T ss_pred CCCCCEEEecCCCCCCC--ccccC-CCccCEEECCCCccCCc--h-hhcccCCCCEEECcCCcC--CCchh--hcc-CCC
Confidence 99999999999998753 34666 99999999999999854 3 688999999999999965 33333 777 999
Q ss_pred CcEEEccCCcCCCc
Q 045865 204 LKYLLLSYSTLGTN 217 (225)
Q Consensus 204 L~~L~l~~n~l~~~ 217 (225)
|+.|+|++|+|++.
T Consensus 177 L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 177 LQNLYLSKNHISDL 190 (605)
T ss_dssp CCEEECCSSCCCBC
T ss_pred CCEEECcCCCCCCC
Confidence 99999999999975
No 106
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=2.9e-17 Score=142.94 Aligned_cols=193 Identities=21% Similarity=0.156 Sum_probs=114.8
Q ss_pred cCCCceeecCCcCceEEeeccccccccchhHHhhhhhcCCCCccE-----EEccCCcccCcchhhHHHHHhcCCCCCEEE
Q 045865 8 CQWERVECSNTTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLES-----LDLTQNKIAGCVENEGIERLSRLNNLKMLN 82 (225)
Q Consensus 8 c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~-----L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~ 82 (225)
..|.+..+. .++++.|++.++.+.. .....+. ...|.. +++..|.+.. .+. .+..++.|+.|+
T Consensus 163 ~~~~~~~~s--~~~~~~l~L~~n~~~~----~~~~~l~-~l~Ls~~~i~~~~~~~n~~~~-~~~----~~~~l~~L~~L~ 230 (727)
T 4b8c_D 163 GTATNSAVS--TPLTPKIELFANGKDE----ANQALLQ-HKKLSQYSIDEDDDIENRMVM-PKD----SKYDDQLWHALD 230 (727)
T ss_dssp -----------------------------------------------------------------------CCCCCCEEE
T ss_pred ccCCCceec--CCccceEEeeCCCCCc----chhhHhh-cCccCcccccCccccccceec-Chh----hhccCCCCcEEE
Confidence 344444443 3578999999988763 2222222 122222 3333333331 233 578899999999
Q ss_pred CCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEecccccc
Q 045865 83 LSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEV 162 (225)
Q Consensus 83 l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 162 (225)
|++|.+.. ++..+..++.|++|++++|.+. .+|. .+..+++|+.|+|++|.+. .+|..+.. +++|+.|++++|.+
T Consensus 231 Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l 305 (727)
T 4b8c_D 231 LSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPA-EIKNLSNLRVLDLSHNRLT-SLPAELGS-CFQLKYFYFFDNMV 305 (727)
T ss_dssp CTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCG-GGGGGTTCCEEECTTSCCS-SCCSSGGG-GTTCSEEECCSSCC
T ss_pred CCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccCh-hhhCCCCCCEEeCcCCcCC-ccChhhcC-CCCCCEEECCCCCC
Confidence 99999985 5666679999999999999998 7886 7899999999999999998 66777877 99999999999999
Q ss_pred ccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCC-CCcEEEccCCcCCCccchhh
Q 045865 163 NGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMP-SLKYLLLSYSTLGTNSSRIL 222 (225)
Q Consensus 163 ~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~-~L~~L~l~~n~l~~~~~~~~ 222 (225)
+ .+|. .|+.+++|+.|+|++|+ +.+..|..+.. +. .+..+++.+|.+++.+|..+
T Consensus 306 ~-~lp~-~~~~l~~L~~L~L~~N~--l~~~~p~~~~~-~~~~~~~l~l~~N~l~~~~p~~l 361 (727)
T 4b8c_D 306 T-TLPW-EFGNLCNLQFLGVEGNP--LEKQFLKILTE-KSVTGLIFYLRDNRPEIPLPHER 361 (727)
T ss_dssp C-CCCS-STTSCTTCCCEECTTSC--CCSHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCC-
T ss_pred C-ccCh-hhhcCCCccEEeCCCCc--cCCCChHHHhh-cchhhhHHhhccCcccCcCcccc
Confidence 7 7777 69999999999999995 45666666644 21 12246778888888777654
No 107
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=2.3e-16 Score=113.24 Aligned_cols=138 Identities=17% Similarity=0.190 Sum_probs=97.1
Q ss_pred CCCCCEEECCCCCCC-hhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCC
Q 045865 75 LNNLKMLNLSGNSFN-NSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLK 153 (225)
Q Consensus 75 l~~L~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~ 153 (225)
.++|++|++++|.+. +.+|..+..+++|++|++++|.+. .+ . .+..+++|+.|++++|.+.+..+..+.. +++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-S-NLPKLPKLKKLELSENRIFGGLDMLAEK-LPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-S-SCCCCSSCCEEEEESCCCCSCCCHHHHH-CTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-h-hhccCCCCCEEECcCCcCchHHHHHHhh-CCCCC
Confidence 356666666666665 334555566677777777777765 33 2 6667778888888888777545566666 89999
Q ss_pred EEeccccccccccccCCCCCCCCCcEEEccCCccccchhHH-HHHhhcCCCCcEEEccCCcCCCc
Q 045865 154 NLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFL-QIIGESMPSLKYLLLSYSTLGTN 217 (225)
Q Consensus 154 ~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~-~~l~~~~~~L~~L~l~~n~l~~~ 217 (225)
.|++++|.+++......+..+++|+.|++++|++.....+. ..+.. +++|+.|++++|.+...
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKL-LPQLTYLDGYDREDQEA 162 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTT-CSSCCEETTEETTSCBC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHh-CccCcEecCCCCChhhc
Confidence 99999998875432137888999999999999663222211 36777 99999999999998743
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.62 E-value=2.1e-15 Score=115.97 Aligned_cols=145 Identities=23% Similarity=0.312 Sum_probs=121.9
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhc
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 98 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~ 98 (225)
...++.|++++|.+. .++ .+..+++|++|++++|.+.. .++ +..+++|++|++++|.+.+. +. +..
T Consensus 40 l~~L~~L~l~~n~i~----~l~--~l~~l~~L~~L~L~~N~i~~-~~~-----l~~l~~L~~L~L~~N~l~~l-~~-~~~ 105 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQ----SLA--GMQFFTNLKELHLSHNQISD-LSP-----LKDLTKLEELSVNRNRLKNL-NG-IPS 105 (263)
T ss_dssp HTTCSEEECTTSCCC----CCT--TGGGCTTCCEEECCSSCCCC-CGG-----GTTCSSCCEEECCSSCCSCC-TT-CCC
T ss_pred cCcCcEEECcCCCcc----cch--HHhhCCCCCEEECCCCccCC-Chh-----hccCCCCCEEECCCCccCCc-Cc-ccc
Confidence 468899999999987 443 57889999999999999987 343 78899999999999999873 32 223
Q ss_pred CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865 99 LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE 178 (225)
Q Consensus 99 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 178 (225)
++|++|++++|.+. .++ .+..+++|+.|++++|.+.+. + .+.. +++|+.|++++|.+++. . .+..+++|+
T Consensus 106 -~~L~~L~L~~N~l~-~~~--~l~~l~~L~~L~Ls~N~i~~~-~-~l~~-l~~L~~L~L~~N~i~~~--~-~l~~l~~L~ 175 (263)
T 1xeu_A 106 -ACLSRLFLDNNELR-DTD--SLIHLKNLEILSIRNNKLKSI-V-MLGF-LSKLEVLDLHGNEITNT--G-GLTRLKKVN 175 (263)
T ss_dssp -SSCCEEECCSSCCS-BSG--GGTTCTTCCEEECTTSCCCBC-G-GGGG-CTTCCEEECTTSCCCBC--T-TSTTCCCCC
T ss_pred -CcccEEEccCCccC-CCh--hhcCcccccEEECCCCcCCCC-h-HHcc-CCCCCEEECCCCcCcch--H-HhccCCCCC
Confidence 89999999999997 444 688899999999999999854 2 5666 99999999999999855 3 789999999
Q ss_pred EEEccCCcc
Q 045865 179 HFDMRFARI 187 (225)
Q Consensus 179 ~l~l~~n~i 187 (225)
.+++++|++
T Consensus 176 ~L~l~~N~~ 184 (263)
T 1xeu_A 176 WIDLTGQKC 184 (263)
T ss_dssp EEEEEEEEE
T ss_pred EEeCCCCcc
Confidence 999999965
No 109
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=1.4e-15 Score=106.88 Aligned_cols=130 Identities=18% Similarity=0.224 Sum_probs=84.8
Q ss_pred CCCCEEECCCCCCC-hhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCE
Q 045865 76 NNLKMLNLSGNSFN-NSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKN 154 (225)
Q Consensus 76 ~~L~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 154 (225)
++|+.|++++|.+. +..+..+..+++|++|++++|.+.+ + ..+..+++|+.|++++|.+.+..+..+.. +++|+.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-CPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-CTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c--hhhhcCCCCCEEECCCCcccchHHHHhhh-CCCCCE
Confidence 45566666666554 3344455566666666666666652 2 25666777777777777776545666666 788888
Q ss_pred Eecccccccccc-ccCCCCCCCCCcEEEccCCccccchhHH-HHHhhcCCCCcEEEccC
Q 045865 155 LSMSFCEVNGVV-RGQGFPHFKSLEHFDMRFARIALNTSFL-QIIGESMPSLKYLLLSY 211 (225)
Q Consensus 155 L~l~~n~~~~~~-~~~~~~~~~~L~~l~l~~n~i~~~~~~~-~~l~~~~~~L~~L~l~~ 211 (225)
|++++|.+++.. +. .+..+++|+.+++++|++.....++ ..+.. +++|+.|++++
T Consensus 93 L~ls~N~i~~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIE-PLKKLENLKSLDLFNCEVTNLNDYRENVFKL-LPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHG-GGGGCTTCCEEECTTCGGGGSTTHHHHHHHH-CTTCCEETTBC
T ss_pred EECCCCcCCChHHHH-HHhhCCCCCEEeCcCCcccchHHHHHHHHHH-CCCcccccCCC
Confidence 888888877532 24 6778888888888888653322221 35666 88888888763
No 110
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=8.7e-16 Score=112.69 Aligned_cols=129 Identities=18% Similarity=0.227 Sum_probs=104.4
Q ss_pred cEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHH-hhhcCCCCCEEEcCCCCCCCccchhhhccCCCCce
Q 045865 51 ESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILS-SLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEY 129 (225)
Q Consensus 51 ~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 129 (225)
++++++++.+.. +|. .+ .+++++|++++|.+....+. .+..+++|++|++++|.+.+..+. .+..+++|+.
T Consensus 11 ~~l~~s~~~l~~-ip~----~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPR----DI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQE 82 (192)
T ss_dssp TEEECTTSCCSS-CCS----CC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCE
T ss_pred CEEEcCCCCcCc-Ccc----CC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh-HcCCcccCCE
Confidence 688999998866 554 23 34899999999999875553 478899999999999999844444 8888999999
Q ss_pred eecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCcccc
Q 045865 130 LTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIAL 189 (225)
Q Consensus 130 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~ 189 (225)
|++++|.+.+..+..+.. +++|+.|++++|.+++..+. .+..+++|+.+++++|++..
T Consensus 83 L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 83 LQLGENKIKEISNKMFLG-LHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp EECCSCCCCEECSSSSTT-CTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBCC
T ss_pred EECCCCcCCccCHHHhcC-CCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCccC
Confidence 999999988655555666 89999999999999876666 88899999999999996643
No 111
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1.3e-15 Score=107.16 Aligned_cols=89 Identities=26% Similarity=0.340 Sum_probs=39.4
Q ss_pred hcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhcc
Q 045865 44 FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHN 123 (225)
Q Consensus 44 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 123 (225)
+..+++|++|++++|.+... . .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+......+..
T Consensus 38 ~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~ 111 (149)
T 2je0_A 38 TDEFEELEFLSTINVGLTSI--A----NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKK 111 (149)
T ss_dssp CTTCTTCCEEECTTSCCCCC--T----TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGG
T ss_pred HhhcCCCcEEECcCCCCCCc--h----hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhh
Confidence 34444455555555444432 1 24444455555555554444344444444445555555544432111113444
Q ss_pred CCCCceeecCCCCCc
Q 045865 124 FTNLEYLTLESSSLH 138 (225)
Q Consensus 124 l~~L~~l~l~~~~~~ 138 (225)
+++|+.|++++|.+.
T Consensus 112 l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 112 LENLKSLDLFNCEVT 126 (149)
T ss_dssp CTTCCEEECTTCGGG
T ss_pred CCCCCEEeCcCCccc
Confidence 444444444444443
No 112
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.60 E-value=1.8e-15 Score=129.27 Aligned_cols=85 Identities=15% Similarity=0.095 Sum_probs=62.0
Q ss_pred CCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCC
Q 045865 125 TNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSL 204 (225)
Q Consensus 125 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L 204 (225)
++|+.|++++|.+.+ ++ .. +++|+.|++++|.++ .++. .+++|+.|++++|++. .+|..+.. +++|
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~-l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~---~lp~~l~~-l~~L 286 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VL-PSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT---RLPESLIH-LSSE 286 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CC-CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC---SCCGGGGG-SCTT
T ss_pred CCCCEEEccCCccCc-CC---CC-CCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC---cCCHHHhh-cccc
Confidence 456677777776653 22 22 677777777777776 3333 4678999999999663 66777888 9999
Q ss_pred cEEEccCCcCCCccchhhc
Q 045865 205 KYLLLSYSTLGTNSSRILH 223 (225)
Q Consensus 205 ~~L~l~~n~l~~~~~~~~~ 223 (225)
+.|++++|++++..|..+.
T Consensus 287 ~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 287 TTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CEEECCSCCCCHHHHHHHH
T ss_pred CEEEecCCCCCCcCHHHHH
Confidence 9999999999988877653
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=1.6e-15 Score=128.20 Aligned_cols=113 Identities=19% Similarity=0.260 Sum_probs=77.3
Q ss_pred CCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCC
Q 045865 48 QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNL 127 (225)
Q Consensus 48 ~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 127 (225)
.+++.|++++|.+.+ +|. .+ +++|++|++++|.++. +| ..+++|++|++++|.+. .+|. +.. +|
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~----~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~-~ip~--l~~--~L 122 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPD----NL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLS-TLPE--LPA--SL 122 (571)
T ss_dssp TTCSEEECCSSCCSC-CCS----CC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC--CCT--TC
T ss_pred CCccEEEeCCCCCCc-cCH----hH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCC-Ccch--hhc--CC
Confidence 389999999999987 555 23 4899999999999985 44 45788999999999887 4553 322 67
Q ss_pred ceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCc
Q 045865 128 EYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFAR 186 (225)
Q Consensus 128 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~ 186 (225)
+.|++++|.+.+ +|. . +++|+.|++++|.+++ ++. .+++|+.|++++|+
T Consensus 123 ~~L~Ls~N~l~~-lp~---~-l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 123 KHLDVDNNQLTM-LPE---L-PALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQ 171 (571)
T ss_dssp CEEECCSSCCSC-CCC---C-CTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSC
T ss_pred CEEECCCCcCCC-CCC---c-CccccEEeCCCCccCc-CCC----cCCCcCEEECCCCC
Confidence 777777777664 333 3 5666666666666653 222 23445555555553
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=1.5e-15 Score=108.94 Aligned_cols=133 Identities=25% Similarity=0.208 Sum_probs=59.5
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 99 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 99 (225)
..+++|++++|.+..+ .+ +..+..+++|++|++++|.+... . .+..+++|++|++++|.+....+..+..+
T Consensus 24 ~~L~~L~l~~n~l~~~--~i-~~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 24 AAVRELVLDNCKSNDG--KI-EGLTAEFVNLEFLSLINVGLISV--S----NLPKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp TSCSEEECCSCBCBTT--BC-SSCCGGGGGCCEEEEESSCCCCC--S----SCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred ccCCEEECCCCCCChh--hH-HHHHHhCCCCCEEeCcCCCCCCh--h----hhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 3455555555554311 11 22234445555555555554442 1 24445555555555555544344444445
Q ss_pred CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHH---HHHHhhCCCCCEEecccccc
Q 045865 100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLL---QSIASIFPSLKNLSMSFCEV 162 (225)
Q Consensus 100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~n~~ 162 (225)
++|++|++++|.+.+......+..+++|+.|++++|.+.+..+ ..+.. +++|+.|++++|.+
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKL-LPQLTYLDGYDRED 159 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTT-CSSCCEETTEETTS
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHh-CccCcEecCCCCCh
Confidence 5555555555554421111244444555555555554442211 12333 45555555555444
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=1.2e-15 Score=112.01 Aligned_cols=131 Identities=18% Similarity=0.180 Sum_probs=99.3
Q ss_pred EEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCC
Q 045865 23 IALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL 102 (225)
Q Consensus 23 ~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L 102 (225)
+.++++++++. +++.... ..+++|++++|.+....+.. .+..+++|++|++++|.+++..+..+..+++|
T Consensus 11 ~~l~~s~~~l~----~ip~~~~---~~l~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 80 (192)
T 1w8a_A 11 TTVDCTGRGLK----EIPRDIP---LHTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80 (192)
T ss_dssp TEEECTTSCCS----SCCSCCC---TTCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CEEEcCCCCcC----cCccCCC---CCCCEEECCCCcCCccCCcc---ccccCCCCCEEECCCCCCCCcCHhHcCCcccC
Confidence 57788888776 4444332 27788888888887754431 26788888888888888888778888888888
Q ss_pred CEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccc
Q 045865 103 RSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGV 165 (225)
Q Consensus 103 ~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 165 (225)
++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+.+.
T Consensus 81 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 81 QELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH-LNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CEEECCSCCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTT-CTTCCEEECTTCCBCCS
T ss_pred CEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhc-CCCCCEEEeCCCCccCc
Confidence 88888888887 444436778888888888888887665666666 88888888888887643
No 116
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.59 E-value=5.3e-15 Score=119.20 Aligned_cols=171 Identities=19% Similarity=0.270 Sum_probs=105.2
Q ss_pred CCccEEEccCCcccCcchhhHHHHHhc-CCCCCEEECCCCCCChhhHHhhh-cCCCCCEEEcCCCCCCCccchhhh----
Q 045865 48 QQLESLDLTQNKIAGCVENEGIERLSR-LNNLKMLNLSGNSFNNSILSSLT-HLSSLRSLNLLWNRLEGSIDVKEL---- 121 (225)
Q Consensus 48 ~~L~~L~l~~n~i~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~---- 121 (225)
+.|+.|++++|.+...........+.. .++|++|++++|.++......+. .+.+|+.|++++|.+.+. ....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~-~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE-ACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH-HHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH-HHHHHHHHH
Confidence 456777888877765433322223332 25788888888877654443333 345778888888877522 22122
Q ss_pred -ccCCCCceeecCCCCCcHHH----HHHHHhhCCCCCEEecccccccccc----ccCCCCCCCCCcEEEccCCccccch-
Q 045865 122 -HNFTNLEYLTLESSSLHISL----LQSIASIFPSLKNLSMSFCEVNGVV----RGQGFPHFKSLEHFDMRFARIALNT- 191 (225)
Q Consensus 122 -~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~~L~~l~l~~n~i~~~~- 191 (225)
...++|+.|++++|.+.+.. +..+.. +++|++|++++|.+.+.. .. .+..+++|+.|++++|.|...+
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~-~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAG-NTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHT-CSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhc-CCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCHHHH
Confidence 23467888888888776432 333455 677888888888776322 22 4555667888888888553322
Q ss_pred -hHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865 192 -SFLQIIGESMPSLKYLLLSYSTLGTNSSRIL 222 (225)
Q Consensus 192 -~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~ 222 (225)
.+...+.. +++|+.|+|++|.|++.....+
T Consensus 229 ~~l~~~L~~-~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 229 LALARAARE-HPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHHH-CSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHHHHh-CCCCCEEeccCCCCCHHHHHHH
Confidence 34455556 7788888888888876655544
No 117
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.58 E-value=1.1e-14 Score=124.01 Aligned_cols=147 Identities=15% Similarity=0.184 Sum_probs=100.7
Q ss_pred hcCCCCCEEECCCCCCChhhHHhhhc-CCCCCEEEcC----CCCCCCc-----cchhhhccCCCCceeecCCC--CCcHH
Q 045865 73 SRLNNLKMLNLSGNSFNNSILSSLTH-LSSLRSLNLL----WNRLEGS-----IDVKELHNFTNLEYLTLESS--SLHIS 140 (225)
Q Consensus 73 ~~l~~L~~L~l~~~~l~~~~~~~l~~-l~~L~~L~l~----~n~~~~~-----~~~~~~~~l~~L~~l~l~~~--~~~~~ 140 (225)
..+++|++|+++.+.+++..+..+.. +++|+.|++. .+.+.+. ++. .+..+++|+.|+++.| .+.+.
T Consensus 375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~-~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS-LLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH-HHHHCTTCCEEEEECCGGGCCHH
T ss_pred hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH-HHHhCCCCCEEEEecCCCCccHH
Confidence 34666666666666666555555544 6777777775 4444421 111 3556788888888643 36666
Q ss_pred HHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchh-HHHHHhhcCCCCcEEEccCCcCCCccc
Q 045865 141 LLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTS-FLQIIGESMPSLKYLLLSYSTLGTNSS 219 (225)
Q Consensus 141 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~-~~~~l~~~~~~L~~L~l~~n~l~~~~~ 219 (225)
.+..+...+++|+.|++++|.+++......+.++++|++|++++|++ .+. ++..+.. +++|+.|++++|++++...
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~~-l~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF--SERAIAAAVTK-LPSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC--BHHHHHHHHHH-CSSCCEEEEESCBCCTTCT
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC--cHHHHHHHHHh-cCccCeeECcCCcCCHHHH
Confidence 66666655889999999999887543332567889999999999964 433 4444556 9999999999999998755
Q ss_pred hhhc
Q 045865 220 RILH 223 (225)
Q Consensus 220 ~~~~ 223 (225)
+.++
T Consensus 531 ~~l~ 534 (592)
T 3ogk_B 531 DLMQ 534 (592)
T ss_dssp TGGG
T ss_pred HHHH
Confidence 5544
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=7.7e-16 Score=130.42 Aligned_cols=182 Identities=19% Similarity=0.223 Sum_probs=123.4
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCc-------------ccCcchhhHHHHHhcCCCCCEEE-CC
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNK-------------IAGCVENEGIERLSRLNNLKMLN-LS 84 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-------------i~~~~~~~~~~~~~~l~~L~~L~-l~ 84 (225)
...++.|++++|++. .+ +..+..+++|++|++++|. +.+..|. .+..+++|+.|+ ++
T Consensus 348 ~~~L~~L~Ls~n~L~----~L-p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~----~l~~l~~L~~L~~l~ 418 (567)
T 1dce_A 348 DEQLFRCELSVEKST----VL-QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE----TLQYFSTLKAVDPMR 418 (567)
T ss_dssp TTTSSSCCCCHHHHH----HH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH----HHHHHHHHHHHCGGG
T ss_pred CccceeccCChhhHH----hh-HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHH----HHHHHHhcccCcchh
Confidence 346678889999885 44 4566888899999886653 2232333 456666777776 44
Q ss_pred CCCCChhhH-----Hhhhc--CCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEec
Q 045865 85 GNSFNNSIL-----SSLTH--LSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSM 157 (225)
Q Consensus 85 ~~~l~~~~~-----~~l~~--l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l 157 (225)
.+.+..... ..+.. ...|+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|..+.. +++|+.|++
T Consensus 419 ~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp--~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L 493 (567)
T 1dce_A 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC--HLEQLLLVTHLDLSHNRLR-ALPPALAA-LRCLEVLQA 493 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCC--CGGGGTTCCEEECCSSCCC-CCCGGGGG-CTTCCEEEC
T ss_pred hcccchhhhhhhhcccccccCccCceEEEecCCCCC-CCc--CccccccCcEeecCccccc-ccchhhhc-CCCCCEEEC
Confidence 443321100 01111 135788888888886 455 3777888888888888877 55666776 888888888
Q ss_pred cccccccccccCCCCCCCCCcEEEccCCccccchhH-HHHHhhcCCCCcEEEccCCcCCCccch
Q 045865 158 SFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSF-LQIIGESMPSLKYLLLSYSTLGTNSSR 220 (225)
Q Consensus 158 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~-~~~l~~~~~~L~~L~l~~n~l~~~~~~ 220 (225)
++|.+++ +| .++++++|+.|++++|++ .+.. |..++. +++|+.|++++|+|++.+|.
T Consensus 494 s~N~l~~-lp--~l~~l~~L~~L~Ls~N~l--~~~~~p~~l~~-l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 494 SDNALEN-VD--GVANLPRLQELLLCNNRL--QQSAAIQPLVS-CPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CSSCCCC-CG--GGTTCSSCCEEECCSSCC--CSSSTTGGGGG-CTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCCC-Cc--ccCCCCCCcEEECCCCCC--CCCCCcHHHhc-CCCCCEEEecCCcCCCCccH
Confidence 8888874 44 577888888888888855 3332 667777 88888888888888876553
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=9.7e-16 Score=133.40 Aligned_cols=160 Identities=18% Similarity=0.171 Sum_probs=104.0
Q ss_pred CCccEEEccCCcccCcchhhHHHHHhcCCCCCEEEC-----CCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhc
Q 045865 48 QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNL-----SGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELH 122 (225)
Q Consensus 48 ~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l-----~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 122 (225)
+.++.|++..+.+.. .+. .+.....|+.+.+ ..+.+. ..+..+..+..|+.|++++|.+. .++. .+.
T Consensus 173 ~~~~~l~L~~n~~~~-~~~----~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~-~~~ 244 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQ----ALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISA-NIF 244 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCS-CCCG-GGG
T ss_pred CccceEEeeCCCCCc-chh----hHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCCh-hhc
Confidence 456778888877765 232 1222233333332 223332 35677888999999999999997 7776 566
Q ss_pred cCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCC
Q 045865 123 NFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMP 202 (225)
Q Consensus 123 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~ 202 (225)
.+++|+.|+|++|.+. .+|..+.. +++|+.|++++|.++ .+|. .++++++|++|+|++|.| ..+|..++. ++
T Consensus 245 ~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N~l---~~lp~~~~~-l~ 316 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT-ELPAEIKN-LSNLRVLDLSHNRLT-SLPA-ELGSCFQLKYFYFFDNMV---TTLPWEFGN-LC 316 (727)
T ss_dssp GCCSCSCCBCTTSCCS-CCCGGGGG-GTTCCEEECTTSCCS-SCCS-SGGGGTTCSEEECCSSCC---CCCCSSTTS-CT
T ss_pred CCCCCCEEEeeCCcCc-ccChhhhC-CCCCCEEeCcCCcCC-ccCh-hhcCCCCCCEEECCCCCC---CccChhhhc-CC
Confidence 8999999999999998 67777777 999999999999998 6777 899999999999999976 467877888 99
Q ss_pred CCcEEEccCCcCCCccchhhc
Q 045865 203 SLKYLLLSYSTLGTNSSRILH 223 (225)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~ 223 (225)
+|+.|+|++|.|++.+|.++.
T Consensus 317 ~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 317 NLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp TCCCEECTTSCCCSHHHHHHH
T ss_pred CccEEeCCCCccCCCChHHHh
Confidence 999999999999999998763
No 120
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.55 E-value=2.4e-14 Score=121.83 Aligned_cols=96 Identities=14% Similarity=0.102 Sum_probs=49.9
Q ss_pred hccCCCCceeecCCCCCcHHHHHH-HHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEcc-----------CCccc
Q 045865 121 LHNFTNLEYLTLESSSLHISLLQS-IASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMR-----------FARIA 188 (225)
Q Consensus 121 ~~~l~~L~~l~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~-----------~n~i~ 188 (225)
+..+++|+.|++++|.+.+..... +.. +++|+.|++. +.+.+......+..+++|+.|+++ ++.+
T Consensus 289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~-~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~- 365 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALLETEDHCTLIQK-CPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV- 365 (592)
T ss_dssp GGGGGGCCEEEETTCCCCHHHHHHHHTT-CTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC-
T ss_pred HhhcCCCcEEecCCCcCCHHHHHHHHHh-CcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCcc-
Confidence 445667888888877766554433 344 7777777776 333222222133445566666666 2322
Q ss_pred cchh-HHHHHhhcCCCCcEEEccCCcCCCccchh
Q 045865 189 LNTS-FLQIIGESMPSLKYLLLSYSTLGTNSSRI 221 (225)
Q Consensus 189 ~~~~-~~~~l~~~~~~L~~L~l~~n~l~~~~~~~ 221 (225)
.+. +...... +++|+.|++..|.+++..+..
T Consensus 366 -~~~~~~~l~~~-~~~L~~L~l~~~~l~~~~~~~ 397 (592)
T 3ogk_B 366 -SQRGLIALAQG-CQELEYMAVYVSDITNESLES 397 (592)
T ss_dssp -CHHHHHHHHHH-CTTCSEEEEEESCCCHHHHHH
T ss_pred -CHHHHHHHHhh-CccCeEEEeecCCccHHHHHH
Confidence 222 2222233 666666666556665544433
No 121
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.54 E-value=1.1e-14 Score=117.32 Aligned_cols=191 Identities=14% Similarity=0.141 Sum_probs=131.9
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCC-CCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhh
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPF-QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 97 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~ 97 (225)
...++.|++++|.+....+...+..+... +.|++|++++|.+........ ...+++|++|++++|.++......+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l---~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL---LPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT---HHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH---HHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 35789999999999865445555555543 799999999999865433321 23456899999999999875555442
Q ss_pred -----cCCCCCEEEcCCCCCCCc----cchhhhccCCCCceeecCCCCCcHHH----HHHHHhhCCCCCEEecccccccc
Q 045865 98 -----HLSSLRSLNLLWNRLEGS----IDVKELHNFTNLEYLTLESSSLHISL----LQSIASIFPSLKNLSMSFCEVNG 164 (225)
Q Consensus 98 -----~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~ 164 (225)
..+.|+.|++++|.+.+. ++. .+...++|++|++++|.+.+.. ...+.. +++|+.|++++|.+++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~-~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR-NRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHH-HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG-CSCCCEEECCSSCCCH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHH-HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc-CCCcCeEECCCCCCCH
Confidence 468899999999998632 222 4467889999999999998654 344455 7899999999999975
Q ss_pred cccc---CCCCCCCCCcEEEccCCccccchhHHHHHhhcCCC-----CcEEE--ccCCcCCCc
Q 045865 165 VVRG---QGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPS-----LKYLL--LSYSTLGTN 217 (225)
Q Consensus 165 ~~~~---~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~-----L~~L~--l~~n~l~~~ 217 (225)
.... ..+..+++|+.|++++|.| .+.-...+.. +.. |+.+. +..+.++..
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i--~~~g~~~L~~-~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNEL--SSEGRQVLRD-LGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSC--CHHHHHHHHH-CC------CEEECCCC----CHHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCC--CHHHHHHHHH-HhcCCCccchhhHhhhcCCccCHH
Confidence 3222 1445678899999999965 3444445544 321 66666 666666543
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=106.60 Aligned_cols=102 Identities=23% Similarity=0.320 Sum_probs=53.1
Q ss_pred EeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCC
Q 045865 24 ALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 103 (225)
Q Consensus 24 ~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~ 103 (225)
.++++++++. .++... .+.+++|++++|.+.. +|. .+..+++|+.|++++|.++...+..|..+++|+
T Consensus 14 ~l~~~~~~l~----~ip~~~---~~~l~~L~L~~n~i~~-ip~----~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~ 81 (193)
T 2wfh_A 14 VVRCSNKGLK----VLPKGI---PRDVTELYLDGNQFTL-VPK----ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81 (193)
T ss_dssp EEECTTSCCS----SCCSCC---CTTCCEEECCSSCCCS-CCG----GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEEcCCCCCC----cCCCCC---CCCCCEEECCCCcCch-hHH----HhhcccCCCEEECCCCcCCEeCHhHccCCCCCC
Confidence 4566666555 333322 1356666666666654 333 356666666666666666555455555556666
Q ss_pred EEEcCCCCCCCccchhhhccCCCCceeecCCCCCc
Q 045865 104 SLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH 138 (225)
Q Consensus 104 ~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 138 (225)
+|++++|.+. .++...+..+++|+.|++++|.+.
T Consensus 82 ~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 82 TLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp EEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEECCCCccC-EeCHHHhCCCCCCCEEECCCCCCC
Confidence 6666666554 333223444444444444444443
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=9e-14 Score=100.46 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=56.9
Q ss_pred CCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEe
Q 045865 77 NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLS 156 (225)
Q Consensus 77 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 156 (225)
+|++|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+.. +++|+.|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L~ 106 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDK-LTQLKELA 106 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEE
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCCCCccccCHHHhhC-CcccCEEE
Confidence 4444444444444333333444444555555555444 333223445555555555555554322223344 67777777
Q ss_pred ccccccccccccCCCCCCCCCcEEEccCCcc
Q 045865 157 MSFCEVNGVVRGQGFPHFKSLEHFDMRFARI 187 (225)
Q Consensus 157 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i 187 (225)
+++|.+++ .+...+..+++|+.+++++|++
T Consensus 107 l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 107 LDTNQLKS-VPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCSSCCSC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred CcCCcceE-eCHHHhcCCcccCEEEecCCCe
Confidence 77777763 3333567777777777777754
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=3.1e-14 Score=102.93 Aligned_cols=111 Identities=22% Similarity=0.246 Sum_probs=62.0
Q ss_pred CCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCC
Q 045865 48 QQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNL 127 (225)
Q Consensus 48 ~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 127 (225)
+.+++|++++|.+....+. .+..+++|++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L 102 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQL 102 (177)
T ss_dssp TTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred CCCcEEEeCCCcccEeCHH----HhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc-ccCHHHhhCCccc
Confidence 4556666666666553333 3455666666666666665544445556666666666666665 3333245556666
Q ss_pred ceeecCCCCCcHHHHHHHHhhCCCCCEEecccccccc
Q 045865 128 EYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNG 164 (225)
Q Consensus 128 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 164 (225)
+.|++++|.+....+..+.. +++|+.|++++|.+.+
T Consensus 103 ~~L~l~~N~l~~~~~~~~~~-l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 103 KELALDTNQLKSVPDGIFDR-LTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CEEECCSSCCSCCCTTTTTT-CTTCCEEECCSSCBCC
T ss_pred CEEECcCCcceEeCHHHhcC-CcccCEEEecCCCeec
Confidence 66666666655322222333 5666666666666553
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=5.2e-14 Score=103.28 Aligned_cols=128 Identities=19% Similarity=0.273 Sum_probs=107.1
Q ss_pred cEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCcee
Q 045865 51 ESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYL 130 (225)
Q Consensus 51 ~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l 130 (225)
++++++++.+.. +|. .+ .++|++|++++|.++. +|..+..+++|+.|++++|.+. .++...+..+++|+.|
T Consensus 13 ~~l~~~~~~l~~-ip~----~~--~~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L 83 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPK----GI--PRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTL 83 (193)
T ss_dssp TEEECTTSCCSS-CCS----CC--CTTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCCCc-CCC----CC--CCCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEE
Confidence 578999998876 554 12 4689999999999985 5688999999999999999998 5554478999999999
Q ss_pred ecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCcccc
Q 045865 131 TLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIAL 189 (225)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~ 189 (225)
++++|.+....+..+.. +++|+.|++++|.++. ++...|..+++|+.+++++|++..
T Consensus 84 ~Ls~N~l~~i~~~~f~~-l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 84 ILSYNRLRCIPPRTFDG-LKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp ECCSSCCCBCCTTTTTT-CTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ECCCCccCEeCHHHhCC-CCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCCeec
Confidence 99999998665666777 9999999999999984 444478999999999999997643
No 126
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.53 E-value=2.4e-14 Score=118.35 Aligned_cols=118 Identities=19% Similarity=0.191 Sum_probs=54.8
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcC
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 99 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 99 (225)
..++.|++++|.+. .++. .+++|++|++++|.+.+ .+. ..++|++|++++|.+++ +| .+..+
T Consensus 91 ~~L~~L~l~~n~l~----~lp~----~~~~L~~L~l~~n~l~~-l~~-------~~~~L~~L~L~~n~l~~-lp-~~~~l 152 (454)
T 1jl5_A 91 PHLESLVASCNSLT----ELPE----LPQSLKSLLVDNNNLKA-LSD-------LPPLLEYLGVSNNQLEK-LP-ELQNS 152 (454)
T ss_dssp TTCSEEECCSSCCS----SCCC----CCTTCCEEECCSSCCSC-CCS-------CCTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred CCCCEEEccCCcCC----cccc----ccCCCcEEECCCCccCc-ccC-------CCCCCCEEECcCCCCCC-Cc-ccCCC
Confidence 45666666666665 2221 12445555555555443 111 01355555555555554 33 35555
Q ss_pred CCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccc
Q 045865 100 SSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163 (225)
Q Consensus 100 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 163 (225)
++|++|++++|.+. .+|. . ..+|+.|++++|.+.+ ++ .+.. +++|+.|++++|.++
T Consensus 153 ~~L~~L~l~~N~l~-~lp~-~---~~~L~~L~L~~n~l~~-l~-~~~~-l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 153 SFLKIIDVDNNSLK-KLPD-L---PPSLEFIAAGNNQLEE-LP-ELQN-LPFLTAIYADNNSLK 208 (454)
T ss_dssp TTCCEEECCSSCCS-CCCC-C---CTTCCEEECCSSCCSS-CC-CCTT-CTTCCEEECCSSCCS
T ss_pred CCCCEEECCCCcCc-ccCC-C---cccccEEECcCCcCCc-Cc-cccC-CCCCCEEECCCCcCC
Confidence 55555555555554 2332 1 1245555555554442 22 2333 444444444444443
No 127
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.53 E-value=2.8e-14 Score=117.94 Aligned_cols=119 Identities=16% Similarity=0.147 Sum_probs=59.7
Q ss_pred ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865 21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 100 (225)
Q Consensus 21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~ 100 (225)
.+++|++++|.+. .++ .+.++++|++|++++|.+.+ .|. ..++|++|++++|.+++ .| .+..++
T Consensus 132 ~L~~L~L~~n~l~----~lp--~~~~l~~L~~L~l~~N~l~~-lp~-------~~~~L~~L~L~~n~l~~-l~-~~~~l~ 195 (454)
T 1jl5_A 132 LLEYLGVSNNQLE----KLP--ELQNSSFLKIIDVDNNSLKK-LPD-------LPPSLEFIAAGNNQLEE-LP-ELQNLP 195 (454)
T ss_dssp TCCEEECCSSCCS----SCC--CCTTCTTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred CCCEEECcCCCCC----CCc--ccCCCCCCCEEECCCCcCcc-cCC-------CcccccEEECcCCcCCc-Cc-cccCCC
Confidence 4555555555554 222 25556666666666665554 222 12355666666655554 22 355556
Q ss_pred CCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccc
Q 045865 101 SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVN 163 (225)
Q Consensus 101 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 163 (225)
+|++|++++|.+. .+|. ...+|+.|++++|.+. .++ .+.. +++|+.|++++|.++
T Consensus 196 ~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~n~l~-~lp-~~~~-l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 196 FLTAIYADNNSLK-KLPD----LPLSLESIVAGNNILE-ELP-ELQN-LPFLTTIYADNNLLK 250 (454)
T ss_dssp TCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCS-SCC-CCTT-CTTCCEEECCSSCCS
T ss_pred CCCEEECCCCcCC-cCCC----CcCcccEEECcCCcCC-ccc-ccCC-CCCCCEEECCCCcCC
Confidence 6666666665554 2221 1134555555555544 222 2333 555555555555554
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=1.9e-14 Score=104.00 Aligned_cols=132 Identities=23% Similarity=0.231 Sum_probs=89.6
Q ss_pred hhcCCCCccEEEccCCcccCcchhhHHHHHhcC-CCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhh
Q 045865 43 LFTPFQQLESLDLTQNKIAGCVENEGIERLSRL-NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKEL 121 (225)
Q Consensus 43 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 121 (225)
.+..+++|++|++++|.+.. .+. +..+ ++|+.|++++|.+++. ..+..+++|++|++++|.+. .++...+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-----~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~ 84 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-----LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLD 84 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-----GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHH
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-----hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchh
Confidence 45667888888888888875 343 3443 4888888888888764 56677788888888888876 4554244
Q ss_pred ccCCCCceeecCCCCCcHHHHH--HHHhhCCCCCEEeccccccccccccC---CCCCCCCCcEEEccCCc
Q 045865 122 HNFTNLEYLTLESSSLHISLLQ--SIASIFPSLKNLSMSFCEVNGVVRGQ---GFPHFKSLEHFDMRFAR 186 (225)
Q Consensus 122 ~~l~~L~~l~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~~~~~L~~l~l~~n~ 186 (225)
..+++|+.|++++|.+.. ++. .+.. +++|+.|++++|.+. ..+.. .+..+++|+.++++.|.
T Consensus 85 ~~l~~L~~L~L~~N~i~~-~~~~~~l~~-l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVE-LGDLDPLAS-LKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHCTTCCEEECCSCCCCC-GGGGGGGGG-CTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hcCCCCCEEECCCCcCCc-chhhHhhhc-CCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 677777777777777753 332 4555 777777777777775 33331 25566777777777774
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=9.8e-14 Score=100.22 Aligned_cols=132 Identities=20% Similarity=0.223 Sum_probs=106.5
Q ss_pred CcCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhh
Q 045865 18 TTGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 97 (225)
Q Consensus 18 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~ 97 (225)
....+++|++++|.+. .+ +......++|+.|++++|.+... + .+..+++|++|++++|.++...+..+.
T Consensus 17 ~~~~L~~L~l~~n~l~----~i-~~~~~~~~~L~~L~Ls~N~l~~~-~-----~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP----VI-ENLGATLDQFDAIDFSDNEIRKL-D-----GFPLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp CTTSCEEEECTTSCCC----SC-CCGGGGTTCCSEEECCSSCCCEE-C-----CCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred CcCCceEEEeeCCCCc----hh-HHhhhcCCCCCEEECCCCCCCcc-c-----ccccCCCCCEEECCCCcccccCcchhh
Confidence 3568999999999987 34 22323334999999999999874 3 488999999999999999886556668
Q ss_pred cCCCCCEEEcCCCCCCCccch-hhhccCCCCceeecCCCCCcHHHHH----HHHhhCCCCCEEeccccccc
Q 045865 98 HLSSLRSLNLLWNRLEGSIDV-KELHNFTNLEYLTLESSSLHISLLQ----SIASIFPSLKNLSMSFCEVN 163 (225)
Q Consensus 98 ~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~ 163 (225)
.+++|++|++++|.+. .++. ..+..+++|+.|++++|.+.. .+. .+.. +++|+.|+++.|...
T Consensus 86 ~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~-l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 86 ALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYK-VPQVRVLDFQKVKLK 153 (176)
T ss_dssp HCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHH-CTTCSEETTEECCHH
T ss_pred cCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHH-CCccceeCCCcCCHH
Confidence 9999999999999996 5553 367789999999999999863 333 3666 999999999999865
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=2.7e-15 Score=127.08 Aligned_cols=163 Identities=16% Similarity=0.219 Sum_probs=126.0
Q ss_pred cCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCC-------------CChhhHHhhhcCCCCCEEE-cCCC
Q 045865 45 TPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNS-------------FNNSILSSLTHLSSLRSLN-LLWN 110 (225)
Q Consensus 45 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------l~~~~~~~l~~l~~L~~L~-l~~n 110 (225)
..+++|+.|++++|.+.. +|. .++.+++|+.|++++|. ..+..|..+..+++|+.|+ +..|
T Consensus 346 ~~~~~L~~L~Ls~n~L~~-Lp~----~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n 420 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV-LQS----ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420 (567)
T ss_dssp STTTTSSSCCCCHHHHHH-HHH----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred ccCccceeccCChhhHHh-hHH----HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc
Confidence 567889999999999875 676 58889999999987764 4455677777788888887 5555
Q ss_pred CCCCccch-----hhhcc--CCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEcc
Q 045865 111 RLEGSIDV-----KELHN--FTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMR 183 (225)
Q Consensus 111 ~~~~~~~~-----~~~~~--l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~ 183 (225)
.+. .++. ..+.. ...|+.|++++|.+.+ +|. +.. +++|+.|++++|.++ .+|. .++++++|+.|+++
T Consensus 421 ~~~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~-l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls 494 (567)
T 1dce_A 421 YLD-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQ-LLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQAS 494 (567)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGG-GTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECC
T ss_pred ccc-hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccc-cccCcEeecCccccc-ccch-hhhcCCCCCEEECC
Confidence 432 2211 01111 1358999999999885 454 776 999999999999998 7777 89999999999999
Q ss_pred CCccccchhHHHHHhhcCCCCcEEEccCCcCCCcc-chhhc
Q 045865 184 FARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNS-SRILH 223 (225)
Q Consensus 184 ~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~-~~~~~ 223 (225)
+|++. .+| .++. +++|+.|++++|+|++.. |..+.
T Consensus 495 ~N~l~---~lp-~l~~-l~~L~~L~Ls~N~l~~~~~p~~l~ 530 (567)
T 1dce_A 495 DNALE---NVD-GVAN-LPRLQELLLCNNRLQQSAAIQPLV 530 (567)
T ss_dssp SSCCC---CCG-GGTT-CSSCCEEECCSSCCCSSSTTGGGG
T ss_pred CCCCC---CCc-ccCC-CCCCcEEECCCCCCCCCCCcHHHh
Confidence 99763 356 7888 999999999999999886 77664
No 131
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.47 E-value=9.4e-14 Score=118.69 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=11.6
Q ss_pred CCCCcEEEccCCcCCCccchhh
Q 045865 201 MPSLKYLLLSYSTLGTNSSRIL 222 (225)
Q Consensus 201 ~~~L~~L~l~~n~l~~~~~~~~ 222 (225)
+++|+.|++++|.|+ .+|..+
T Consensus 260 ~~~L~~L~Ls~N~L~-~lp~~l 280 (622)
T 3g06_A 260 PSGLLSLSVYRNQLT-RLPESL 280 (622)
T ss_dssp CTTCCEEECCSSCCC-SCCGGG
T ss_pred cccCcEEeCCCCCCC-cCCHHH
Confidence 555666666666666 334433
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=6.5e-16 Score=113.88 Aligned_cols=160 Identities=21% Similarity=0.211 Sum_probs=114.4
Q ss_pred cCCCCccEEEccCCcccCcchh--hHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhc
Q 045865 45 TPFQQLESLDLTQNKIAGCVEN--EGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELH 122 (225)
Q Consensus 45 ~~l~~L~~L~l~~n~i~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 122 (225)
.....++.+++..+.+.+..+. .....+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+. .+|. .+.
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~-~~~ 90 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN-LDA 90 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS-HHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc-hhh
Confidence 3444555555555554443321 000047888999999999998877 44 7778899999999999887 6665 666
Q ss_pred cCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHH--------
Q 045865 123 NFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFL-------- 194 (225)
Q Consensus 123 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~-------- 194 (225)
.+++|+.|++++|.+.+ ++ .+.. +++|+.|++++|.++.......+..+++|+.+++++|++ .+..|
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~-l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l--~~~~~~~~~~~~~ 165 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEK-LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL--YNDYKENNATSEY 165 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHH-HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH--HHHHHTTTTHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-cccc-CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc--ccccccccchHHH
Confidence 67889999999998875 34 5666 889999999999987533312578899999999999955 33322
Q ss_pred --HHHhhcCCCCcEEEccCCcCCC
Q 045865 195 --QIIGESMPSLKYLLLSYSTLGT 216 (225)
Q Consensus 195 --~~l~~~~~~L~~L~l~~n~l~~ 216 (225)
..+.. +++|+.|+ ++.++.
T Consensus 166 ~~~~~~~-l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 166 RIEVVKR-LPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHHH-CSSCSEEC--CGGGTT
T ss_pred HHHHHHh-CCCcEEEC--CcccCH
Confidence 23677 99999987 777764
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.47 E-value=6.9e-15 Score=117.67 Aligned_cols=178 Identities=17% Similarity=0.128 Sum_probs=128.7
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccE-EEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhh
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLES-LDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 97 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~-L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~ 97 (225)
..++++|++++|++.+ .+++..|.+++.+.+ +.+..|.+....+. .|..+++|++|++++|.+....+..+.
T Consensus 53 l~~L~~L~Ls~N~i~~---~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~----~f~~l~~L~~L~l~~n~l~~~~~~~~~ 125 (350)
T 4ay9_X 53 FGDLEKIEISQNDVLE---VIEADVFSNLPKLHEIRIEKANNLLYINPE----AFQNLPNLQYLLISNTGIKHLPDVHKI 125 (350)
T ss_dssp CTTCCEEEEECCTTCC---EECTTSBCSCTTCCEEEEEEETTCCEECTT----SBCCCTTCCEEEEEEECCSSCCCCTTC
T ss_pred CCCCCEEECcCCCCCC---ccChhHhhcchhhhhhhcccCCcccccCch----hhhhccccccccccccccccCCchhhc
Confidence 4689999999999763 567778899988776 55567888875555 588999999999999999875555555
Q ss_pred cCCCCCEEEcCCC-CCCCccchhhhccCC-CCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCC
Q 045865 98 HLSSLRSLNLLWN-RLEGSIDVKELHNFT-NLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFK 175 (225)
Q Consensus 98 ~l~~L~~L~l~~n-~~~~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 175 (225)
...++..+++.++ .+. .++...+..+. .++.|++++|.+.. ++...+. ..+|+.+.+.+++....++...|.+++
T Consensus 126 ~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~ 202 (350)
T 4ay9_X 126 HSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQE-IHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGAS 202 (350)
T ss_dssp CBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCCE-ECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEE
T ss_pred ccchhhhhhhccccccc-cccccchhhcchhhhhhccccccccC-CChhhcc-ccchhHHhhccCCcccCCCHHHhccCc
Confidence 6667888888664 454 55554566554 58889999998873 4444444 677889988764433366665788999
Q ss_pred CCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCC
Q 045865 176 SLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYS 212 (225)
Q Consensus 176 ~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n 212 (225)
+|+.|++++|+| ..+|.. . +.+|+.|.+.++
T Consensus 203 ~L~~LdLs~N~l---~~lp~~--~-~~~L~~L~~l~~ 233 (350)
T 4ay9_X 203 GPVILDISRTRI---HSLPSY--G-LENLKKLRARST 233 (350)
T ss_dssp CCSEEECTTSCC---CCCCSS--S-CTTCCEEECTTC
T ss_pred ccchhhcCCCCc---CccChh--h-hccchHhhhccC
Confidence 999999999976 334432 2 556777766555
No 134
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.45 E-value=2.2e-13 Score=115.89 Aligned_cols=188 Identities=16% Similarity=0.202 Sum_probs=100.3
Q ss_pred CceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEEC----------------
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNL---------------- 83 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l---------------- 83 (225)
.+++.|++++|.+.. ......+..+++|++|++.+| +...... .....+++|++|++
T Consensus 289 ~~L~~L~L~~~~l~~---~~l~~~~~~~~~L~~L~l~~~-~~~~~l~---~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 289 SRLTTLNLSYATVQS---YDLVKLLCQCPKLQRLWVLDY-IEDAGLE---VLASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp TTCCEEECTTCCCCH---HHHHHHHTTCTTCCEEEEEGG-GHHHHHH---HHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred CCCCEEEccCCCCCH---HHHHHHHhcCCCcCEEeCcCc-cCHHHHH---HHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence 578888888887653 223334556666666666655 2211100 01123445555544
Q ss_pred ------------------CCCCCChhhHHhhh-cCCCCCEEEcC--C----CCCCCccch-----hhhccCCCCceeecC
Q 045865 84 ------------------SGNSFNNSILSSLT-HLSSLRSLNLL--W----NRLEGSIDV-----KELHNFTNLEYLTLE 133 (225)
Q Consensus 84 ------------------~~~~l~~~~~~~l~-~l~~L~~L~l~--~----n~~~~~~~~-----~~~~~l~~L~~l~l~ 133 (225)
..+.++......+. .+++|+.|++. + +.+. ..+. ..+..+++|+.|+++
T Consensus 362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~ 440 (594)
T 2p1m_B 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLS 440 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeec
Confidence 44444443333333 35666666666 2 2232 1110 024455667777775
Q ss_pred CCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCc
Q 045865 134 SSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYST 213 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~ 213 (225)
+ .+.+..+..+...+++|+.|++++|.+++........++++|+.|++++|++ .+..+..+...+++|+.|++++|+
T Consensus 441 ~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~--~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 441 G-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF--GDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp S-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC--CHHHHHHTGGGGGGSSEEEEESSC
T ss_pred C-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC--cHHHHHHHHHhCCCCCEEeeeCCC
Confidence 5 5555555555444677777777777765443331224567777777777754 333333232227777777777777
Q ss_pred CCCcc
Q 045865 214 LGTNS 218 (225)
Q Consensus 214 l~~~~ 218 (225)
++...
T Consensus 518 ~~~~~ 522 (594)
T 2p1m_B 518 VSFGA 522 (594)
T ss_dssp CBHHH
T ss_pred CCHHH
Confidence 75443
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.39 E-value=2.9e-13 Score=107.27 Aligned_cols=194 Identities=15% Similarity=0.162 Sum_probs=132.5
Q ss_pred cCceEEeeccccccc--cc-----h---------hHHhhhhhcC--------CCCccEEEccCCcccCcchhhHHHHHhc
Q 045865 19 TGRVIALDLSYIYSG--EY-----S---------WYLNASLFTP--------FQQLESLDLTQNKIAGCVENEGIERLSR 74 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~--~~-----~---------~~~~~~~~~~--------l~~L~~L~l~~n~i~~~~~~~~~~~~~~ 74 (225)
..+++.|||++|++. .+ . ..++..+|.+ +++|++|.+.+ .+...... +|..
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~----aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDA----AFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTT----TTTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHH----Hhhc
Confidence 357889999999887 11 0 0345667888 99999999988 77764444 6889
Q ss_pred CCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCC-------C-------------------Cccchh---------
Q 045865 75 LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRL-------E-------------------GSIDVK--------- 119 (225)
Q Consensus 75 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~-------~-------------------~~~~~~--------- 119 (225)
+++|+.+++..+.+....+..|..+.++..+....... . +.++..
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR 202 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence 99999999999988766666676666666665544211 0 000000
Q ss_pred -----------------h-hccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc-EE
Q 045865 120 -----------------E-LHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE-HF 180 (225)
Q Consensus 120 -----------------~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~-~l 180 (225)
. ...+++|+.+++.+|.+.......+.. +.+|+.+.+..| ++ .++..+|.++.+|+ .+
T Consensus 203 ~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~-~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 203 DINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQ-KKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTT-CTTCCEEECCTT-CC-EECTTTTTTCTTCCEEE
T ss_pred ccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhC-CCCCCEEECCcc-cc-eehHHHhhCChhccEEE
Confidence 0 012678899999988877443445555 889999999887 55 45555899999998 99
Q ss_pred EccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccchhhcc
Q 045865 181 DMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSRILHQ 224 (225)
Q Consensus 181 ~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~~~ 224 (225)
++..+ +...+ +.++.. |++|+.+++.+|.++...+..|..
T Consensus 280 ~l~~~-l~~I~--~~aF~~-c~~L~~l~l~~n~i~~I~~~aF~~ 319 (329)
T 3sb4_A 280 ELPAS-VTAIE--FGAFMG-CDNLRYVLATGDKITTLGDELFGN 319 (329)
T ss_dssp EECTT-CCEEC--TTTTTT-CTTEEEEEECSSCCCEECTTTTCT
T ss_pred EEccc-ceEEc--hhhhhC-CccCCEEEeCCCccCccchhhhcC
Confidence 88873 32111 345666 899999999999888777666653
No 136
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.39 E-value=2.6e-12 Score=109.29 Aligned_cols=38 Identities=18% Similarity=0.140 Sum_probs=23.1
Q ss_pred cCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEecccc
Q 045865 123 NFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFC 160 (225)
Q Consensus 123 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n 160 (225)
.+++|+.|++++|.+.+.....+...+++|+.|++.+|
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 35677777777777665444333322677777777666
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=1.7e-12 Score=93.22 Aligned_cols=105 Identities=22% Similarity=0.202 Sum_probs=87.8
Q ss_pred eEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCC
Q 045865 22 VIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 101 (225)
Q Consensus 22 v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~ 101 (225)
.++++++++++. .++... .+.+++|++++|.+.+..+. .|..+++|++|++++|.++...+..+..+++
T Consensus 11 ~~~l~~s~n~l~----~ip~~~---~~~l~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 11 GTTVDCSGKSLA----SVPTGI---PTTTQVLYLYDNQITKLEPG----VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79 (170)
T ss_dssp TTEEECTTSCCS----SCCSCC---CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEEeCCCCcC----ccCccC---CCCCcEEEcCCCcCCccChh----hhcCcccCCEEECCCCCcCccChhhccCCCC
Confidence 357899999887 455433 37889999999999986666 5889999999999999999877777889999
Q ss_pred CCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCc
Q 045865 102 LRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH 138 (225)
Q Consensus 102 L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 138 (225)
|++|++++|.+. .++...+..+++|+.|++.+|.+.
T Consensus 80 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 80 LTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCEEECCCCccC-EeCHHHhcCCCCCCEEEeCCCCCC
Confidence 999999999998 555546888999999999999875
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=4.4e-15 Score=109.40 Aligned_cols=140 Identities=19% Similarity=0.244 Sum_probs=110.0
Q ss_pred HHhcCCCCCEEECCCCCCChhhH------HhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHH
Q 045865 71 RLSRLNNLKMLNLSGNSFNNSIL------SSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQS 144 (225)
Q Consensus 71 ~~~~l~~L~~L~l~~~~l~~~~~------~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~ 144 (225)
.+.....++.+++..+.+.+..+ ..+..+++|++|++++|.+. .++ .+..+++|+.|++++|.+. .++..
T Consensus 13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~-~l~~~ 88 (198)
T 1ds9_A 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIK-KIENL 88 (198)
T ss_dssp HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEEC-SCSSH
T ss_pred HHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCcc-cccch
Confidence 45666677666666666655444 48899999999999999987 465 7888999999999999987 45555
Q ss_pred HHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccch
Q 045865 145 IASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSR 220 (225)
Q Consensus 145 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~ 220 (225)
+.. +++|+.|++++|.+++ .+ .+..+++|+.|++++|++..... ...+.. +++|+.|++++|++++.+|.
T Consensus 89 ~~~-~~~L~~L~L~~N~l~~-l~--~~~~l~~L~~L~l~~N~i~~~~~-~~~l~~-l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 89 DAV-ADTLEELWISYNQIAS-LS--GIEKLVNLRVLYMSNNKITNWGE-IDKLAA-LDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHH-HHHCSEEEEEEEECCC-HH--HHHHHHHSSEEEESEEECCCHHH-HHHHTT-TTTCSEEEECSCHHHHHHHT
T ss_pred hhc-CCcCCEEECcCCcCCc-CC--ccccCCCCCEEECCCCcCCchhH-HHHHhc-CCCCCEEEecCCcccccccc
Confidence 555 7899999999999985 33 47788999999999997632222 246788 99999999999999877654
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=3.3e-12 Score=92.01 Aligned_cols=104 Identities=21% Similarity=0.222 Sum_probs=87.3
Q ss_pred EEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCC
Q 045865 23 IALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL 102 (225)
Q Consensus 23 ~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L 102 (225)
+.++++++++. .++... .+.|++|++++|.+.+..+. .|..+++|++|++++|.++...+..+..+++|
T Consensus 15 ~~l~~~~n~l~----~iP~~~---~~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 83 (174)
T 2r9u_A 15 TLVNCQNIRLA----SVPAGI---PTDKQRLWLNNNQITKLEPG----VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL 83 (174)
T ss_dssp SEEECCSSCCS----SCCSCC---CTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cEEEeCCCCCC----ccCCCc---CCCCcEEEeCCCCccccCHH----HhcCCcCCCEEECCCCCCCccChhHhCCcchh
Confidence 67899999887 555533 27889999999999986666 58899999999999999988666677889999
Q ss_pred CEEEcCCCCCCCccchhhhccCCCCceeecCCCCCc
Q 045865 103 RSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH 138 (225)
Q Consensus 103 ~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 138 (225)
++|++++|.+. .++...+..+++|+.|++.+|.+.
T Consensus 84 ~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 84 TQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred hEEECCCCccc-eeCHHHhccccCCCEEEeCCCCcc
Confidence 99999999998 566546888999999999999875
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.30 E-value=3.9e-12 Score=91.32 Aligned_cols=121 Identities=20% Similarity=0.293 Sum_probs=89.9
Q ss_pred CCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEe
Q 045865 77 NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLS 156 (225)
Q Consensus 77 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 156 (225)
..+.++++++.++. +|..+ ...+++|++++|.+. .++...+..+++|+.|++++|.+....+..+.. +++|+.|+
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~-l~~L~~L~ 84 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK-LTQLTQLS 84 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-CTTCCEEE
T ss_pred CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccC-CCCCCEEE
Confidence 46789999998876 44433 378999999999998 444337888999999999999988544444556 89999999
Q ss_pred ccccccccccccCCCCCCCCCcEEEccCCccccc----hhHHHHHhhcCCCC
Q 045865 157 MSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALN----TSFLQIIGESMPSL 204 (225)
Q Consensus 157 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~----~~~~~~l~~~~~~L 204 (225)
+++|.+++..+. .|.++++|+.|++++|++... ..+..++.. .+.+
T Consensus 85 L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~-~~~~ 134 (170)
T 3g39_A 85 LNDNQLKSIPRG-AFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQ-HPGL 134 (170)
T ss_dssp CCSSCCCCCCTT-TTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHH-CGGG
T ss_pred CCCCccCEeCHH-HhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHh-Ccce
Confidence 999999854444 788999999999999966432 234455555 4433
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=7.9e-12 Score=90.05 Aligned_cols=106 Identities=15% Similarity=0.220 Sum_probs=82.5
Q ss_pred CCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEe
Q 045865 77 NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLS 156 (225)
Q Consensus 77 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 156 (225)
.-+.++++++.+.. +|..+. +.|++|++++|.+. .+++..+..+++|+.|++++|.+.+..+..+.. +++|+.|+
T Consensus 13 ~~~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~-l~~L~~L~ 87 (174)
T 2r9u_A 13 DQTLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK-LTQLTQLD 87 (174)
T ss_dssp CSSEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEE
T ss_pred CCcEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCC-cchhhEEE
Confidence 34788999998865 444332 78999999999998 444347888999999999999987543334455 89999999
Q ss_pred ccccccccccccCCCCCCCCCcEEEccCCccc
Q 045865 157 MSFCEVNGVVRGQGFPHFKSLEHFDMRFARIA 188 (225)
Q Consensus 157 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~ 188 (225)
+++|.++. ++...+..+++|+.|++++|++.
T Consensus 88 L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 88 LNDNHLKS-IPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCSSCCCC-CCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCCCccce-eCHHHhccccCCCEEEeCCCCcc
Confidence 99999984 44436889999999999999764
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.25 E-value=1.8e-11 Score=97.00 Aligned_cols=188 Identities=16% Similarity=0.151 Sum_probs=130.2
Q ss_pred CceEEeeccccccccchhHHhhhhhcC-CCCccEEEccCCcccC-------------------cchhhHHHHHhc-----
Q 045865 20 GRVIALDLSYIYSGEYSWYLNASLFTP-FQQLESLDLTQNKIAG-------------------CVENEGIERLSR----- 74 (225)
Q Consensus 20 ~~v~~l~l~~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~n~i~~-------------------~~~~~~~~~~~~----- 74 (225)
.++++|.++++--. .....+.. +++|++|++++|.+.. .++.. .|..
T Consensus 25 ~~l~~L~l~g~i~~-----~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~---aF~~~~~~~ 96 (329)
T 3sb4_A 25 NSITHLTLTGKLNA-----EDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAY---AFSNVVNGV 96 (329)
T ss_dssp HHCSEEEEEEEECH-----HHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTT---TTEEEETTE
T ss_pred CceeEEEEeccccH-----HHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHH---Hhccccccc
Confidence 35778888875321 11222333 8889999999998871 12222 4677
Q ss_pred ---CCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCC---------------
Q 045865 75 ---LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSS--------------- 136 (225)
Q Consensus 75 ---l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~--------------- 136 (225)
+++|+++++.. .+.......|..+.+|+.+++..|.+. .++...|..+.++..+......
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 99999999999 888877888999999999999999876 5555466665555555443310
Q ss_pred --------------------------------------CcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCc
Q 045865 137 --------------------------------------LHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLE 178 (225)
Q Consensus 137 --------------------------------------~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 178 (225)
+.......+...+++|+.+++++|.++ .++...|.++.+|+
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLL 253 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCC
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCC
Confidence 111111222223899999999999988 66666999999999
Q ss_pred EEEccCCccccchhHHHHHhhcCCCCc-EEEccCCcCCCccchhhc
Q 045865 179 HFDMRFARIALNTSFLQIIGESMPSLK-YLLLSYSTLGTNSSRILH 223 (225)
Q Consensus 179 ~l~l~~n~i~~~~~~~~~l~~~~~~L~-~L~l~~n~l~~~~~~~~~ 223 (225)
.+++..| +... -..++.. +++|+ .+++.+ .++...+..|.
T Consensus 254 ~l~l~~n-i~~I--~~~aF~~-~~~L~~~l~l~~-~l~~I~~~aF~ 294 (329)
T 3sb4_A 254 KIKLPHN-LKTI--GQRVFSN-CGRLAGTLELPA-SVTAIEFGAFM 294 (329)
T ss_dssp EEECCTT-CCEE--CTTTTTT-CTTCCEEEEECT-TCCEECTTTTT
T ss_pred EEECCcc-ccee--hHHHhhC-ChhccEEEEEcc-cceEEchhhhh
Confidence 9999998 4221 1345666 99999 999998 77766666654
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=1.6e-10 Score=92.08 Aligned_cols=102 Identities=22% Similarity=0.269 Sum_probs=84.3
Q ss_pred eecccc-ccccchhHHhhhhhcCCCCccEEEccC-CcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCC
Q 045865 25 LDLSYI-YSGEYSWYLNASLFTPFQQLESLDLTQ-NKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL 102 (225)
Q Consensus 25 l~l~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L 102 (225)
++.+++ ++. .++. +..+++|++|+|++ |.+....+. .|..+++|+.|+|++|.+++..+..|..+++|
T Consensus 13 v~~~~~n~l~----~ip~--l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 82 (347)
T 2ifg_A 13 LRCTRDGALD----SLHH--LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82 (347)
T ss_dssp EECCSSCCCT----TTTT--SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCC
T ss_pred EEcCCCCCCC----ccCC--CCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCCccceeCHHHhcCCcCC
Confidence 455555 665 5555 88899999999996 999885555 68899999999999999999888899999999
Q ss_pred CEEEcCCCCCCCccchhhhccCCCCceeecCCCCCc
Q 045865 103 RSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLH 138 (225)
Q Consensus 103 ~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 138 (225)
+.|++++|.+. .++...+..+. |+.|++.+|.+.
T Consensus 83 ~~L~l~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 83 SRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CEEECCSSCCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CEEeCCCCccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence 99999999998 56654555555 999999999876
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.10 E-value=1.4e-09 Score=78.93 Aligned_cols=102 Identities=24% Similarity=0.190 Sum_probs=57.6
Q ss_pred HHhhhhhcCCCCccEEEccCC-cccCcchhhHHHHHhcCCCCCEEECCCCCCChhh----HHhhhcCCCCCEEEcCCCCC
Q 045865 38 YLNASLFTPFQQLESLDLTQN-KIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSI----LSSLTHLSSLRSLNLLWNRL 112 (225)
Q Consensus 38 ~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~----~~~l~~l~~L~~L~l~~n~~ 112 (225)
+..+..+...+.|++|++++| .+...........+...++|++|++++|.+.... ...+...+.|++|++++|.+
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 445556667777777777777 6665444434445566677777777777775432 33344445666666666665
Q ss_pred CCccc---hhhhccCCCCceeec--CCCCCcH
Q 045865 113 EGSID---VKELHNFTNLEYLTL--ESSSLHI 139 (225)
Q Consensus 113 ~~~~~---~~~~~~l~~L~~l~l--~~~~~~~ 139 (225)
.+.-. ...+...++|+.|++ ++|.+.+
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 52210 113334445566666 5555553
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.06 E-value=7.3e-10 Score=80.48 Aligned_cols=121 Identities=17% Similarity=0.125 Sum_probs=95.3
Q ss_pred cCceEEeecccc-ccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChh----hH
Q 045865 19 TGRVIALDLSYI-YSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNS----IL 93 (225)
Q Consensus 19 ~~~v~~l~l~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~----~~ 93 (225)
...+++|++++| .+...+.......+...+.|++|++++|.+.........+.+...++|++|++++|.+... +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 468999999999 9987666777778888999999999999998655555555677889999999999999864 35
Q ss_pred HhhhcCCCCCEEEc--CCCCCCCccch---hhhccCCCCceeecCCCCCcH
Q 045865 94 SSLTHLSSLRSLNL--LWNRLEGSIDV---KELHNFTNLEYLTLESSSLHI 139 (225)
Q Consensus 94 ~~l~~l~~L~~L~l--~~n~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~ 139 (225)
..+...+.|++|++ ++|.+.+.... ..+...++|+.|++++|.+..
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 56667789999999 88988733211 244556788888888888753
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.00 E-value=4.7e-10 Score=91.16 Aligned_cols=180 Identities=11% Similarity=0.125 Sum_probs=100.6
Q ss_pred ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865 21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 100 (225)
Q Consensus 21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~ 100 (225)
.++++.+.. .+. .+...+|.++++|+.+++..|.+...... .|. +.+|+.+.+..+ +.......|..+.
T Consensus 158 ~L~~i~lp~-~l~----~I~~~aF~~c~~L~~l~l~~n~l~~I~~~----aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~ 226 (401)
T 4fdw_A 158 TVQEIVFPS-TLE----QLKEDIFYYCYNLKKADLSKTKITKLPAS----TFV-YAGIEEVLLPVT-LKEIGSQAFLKTS 226 (401)
T ss_dssp CCCEEECCT-TCC----EECSSTTTTCTTCCEEECTTSCCSEECTT----TTT-TCCCSEEECCTT-CCEECTTTTTTCT
T ss_pred CceEEEeCC-Ccc----EehHHHhhCcccCCeeecCCCcceEechh----hEe-ecccCEEEeCCc-hheehhhHhhCCC
Confidence 355566654 333 55556677777777777776665543222 233 355555555532 4333344444555
Q ss_pred CCCEEEcCCC---------------------CCCCccchhhhccCCCCceeecCCCCCc-----HHHHHHHHhhCCCCCE
Q 045865 101 SLRSLNLLWN---------------------RLEGSIDVKELHNFTNLEYLTLESSSLH-----ISLLQSIASIFPSLKN 154 (225)
Q Consensus 101 ~L~~L~l~~n---------------------~~~~~~~~~~~~~l~~L~~l~l~~~~~~-----~~~~~~~~~~~~~L~~ 154 (225)
+|+.+.+..+ .+. .++...|..+.+|+.+.+.++.+. ......+.. |++|+.
T Consensus 227 ~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~-c~~L~~ 304 (401)
T 4fdw_A 227 QLKTIEIPENVSTIGQEAFRESGITTVKLPNGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG-CPKLAR 304 (401)
T ss_dssp TCCCEECCTTCCEECTTTTTTCCCSEEEEETTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT-CTTCCE
T ss_pred CCCEEecCCCccCccccccccCCccEEEeCCCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC-CccCCe
Confidence 5555554432 122 344446666777777777665432 112234444 777777
Q ss_pred EeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcCCCccch
Q 045865 155 LSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTLGTNSSR 220 (225)
Q Consensus 155 L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l~~~~~~ 220 (225)
+.+.. .++ .+....|.+|.+|+.+.+..+ +.. --..++.. + +|+.+++.+|.+....+.
T Consensus 305 l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~--I~~~aF~~-~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 305 FEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQ--INFSAFNN-T-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp ECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCE--ECTTSSSS-S-CCCEEEECCSSCCBCCCS
T ss_pred EEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccE--EcHHhCCC-C-CCCEEEEcCCCCcccccc
Confidence 77773 354 344447778888888888655 211 11234555 7 888888888877654443
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.00 E-value=6.9e-10 Score=88.35 Aligned_cols=88 Identities=18% Similarity=0.290 Sum_probs=40.0
Q ss_pred hhcCCCCCEEEcCC-CCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCC
Q 045865 96 LTHLSSLRSLNLLW-NRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHF 174 (225)
Q Consensus 96 l~~l~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 174 (225)
+..+.+|+.|++++ |.+. .++...+..+.+|+.|+|++|.+.+..+..+.. +++|+.|+|++|.+++ ++...+..+
T Consensus 27 l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L~l~~N~l~~-~~~~~~~~~ 103 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF-TPRLSRLNLSFNALES-LSWKTVQGL 103 (347)
T ss_dssp SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGS-CSCCCEEECCSSCCSC-CCSTTTCSC
T ss_pred CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcC-CcCCCEEeCCCCccce-eCHHHcccC
Confidence 44444444455443 4443 333224444445555555555444333333343 5555555555555542 222133333
Q ss_pred CCCcEEEccCCcc
Q 045865 175 KSLEHFDMRFARI 187 (225)
Q Consensus 175 ~~L~~l~l~~n~i 187 (225)
. |+.|++.+|++
T Consensus 104 ~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 104 S-LQELVLSGNPL 115 (347)
T ss_dssp C-CCEEECCSSCC
T ss_pred C-ceEEEeeCCCc
Confidence 3 55555555544
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.98 E-value=2.9e-09 Score=85.27 Aligned_cols=193 Identities=19% Similarity=0.207 Sum_probs=98.0
Q ss_pred CceEEeeccccccc-cchhHHh---hhhhcCCCCccEEEccCCccc---------CcchhhHHHHHhcCCCCCEEECCCC
Q 045865 20 GRVIALDLSYIYSG-EYSWYLN---ASLFTPFQQLESLDLTQNKIA---------GCVENEGIERLSRLNNLKMLNLSGN 86 (225)
Q Consensus 20 ~~v~~l~l~~~~~~-~~~~~~~---~~~~~~l~~L~~L~l~~n~i~---------~~~~~~~~~~~~~l~~L~~L~l~~~ 86 (225)
.+|+.|.+....+. ...+... .....++++|+.|.+.+.... ..... .+..+|+|+.|.+.++
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~----ll~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSP----VLDAMPLLNNLKIKGT 182 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHH----HHHTCTTCCEEEEECC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHH----HHhcCCCCcEEEEeCC
Confidence 35666666644433 1111221 222445667777776543221 01122 4566778888887766
Q ss_pred CCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhc--cCCCCceeecCC--CC------CcHHHHHHHH-hhCCCCCEE
Q 045865 87 SFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELH--NFTNLEYLTLES--SS------LHISLLQSIA-SIFPSLKNL 155 (225)
Q Consensus 87 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~--~l~~L~~l~l~~--~~------~~~~~~~~~~-~~~~~L~~L 155 (225)
.-.. ++. + .+++|++|++..+.+...... .+. .+++|+.|+|+. +. +.. +...+. ..+++|+.|
T Consensus 183 ~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~-~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~-l~~~l~~~~~p~Lr~L 257 (362)
T 2ra8_A 183 NNLS-IGK-K-PRPNLKSLEIISGGLPDSVVE-DILGSDLPNLEKLVLYVGVEDYGFDGDMNV-FRPLFSKDRFPNLKWL 257 (362)
T ss_dssp BTCB-CCS-C-BCTTCSEEEEECSBCCHHHHH-HHHHSBCTTCCEEEEECBCGGGTCCSCGGG-TGGGSCTTTCTTCCEE
T ss_pred CCce-ecc-c-cCCCCcEEEEecCCCChHHHH-HHHHccCCCCcEEEEeccccccccchhHHH-HHHHHhcCCCCCcCEE
Confidence 2111 111 2 367777777777766422211 332 567777777642 11 100 011111 116777888
Q ss_pred ecccccccccccc--CCCCCCCCCcEEEccCCccccch--hHHHHHhhcCCCCcEEEccCCcCCCccchhh
Q 045865 156 SMSFCEVNGVVRG--QGFPHFKSLEHFDMRFARIALNT--SFLQIIGESMPSLKYLLLSYSTLGTNSSRIL 222 (225)
Q Consensus 156 ~l~~n~~~~~~~~--~~~~~~~~L~~l~l~~n~i~~~~--~~~~~l~~~~~~L~~L~l~~n~l~~~~~~~~ 222 (225)
.+.+|.+.+.... .....+++|++|+++.|.+...+ .++..+.. +++|+.|+++.|.+++...+.+
T Consensus 258 ~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~-l~~L~~L~L~~n~i~d~~~~~l 327 (362)
T 2ra8_A 258 GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDK-IKHLKFINMKYNYLSDEMKKEL 327 (362)
T ss_dssp EEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHH-HTTCSEEECCSBBCCHHHHHHH
T ss_pred eCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhccc-CCcceEEECCCCcCCHHHHHHH
Confidence 7777776532221 01134667788888777443221 12333344 6778888888777776554444
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.96 E-value=9e-09 Score=82.41 Aligned_cols=169 Identities=19% Similarity=0.220 Sum_probs=110.7
Q ss_pred CCccEEEccCCcccC-cc---hhhHHHHHhcCCCCCEEECCCCCCC---------hhhHHhhhcCCCCCEEEcCCCCCCC
Q 045865 48 QQLESLDLTQNKIAG-CV---ENEGIERLSRLNNLKMLNLSGNSFN---------NSILSSLTHLSSLRSLNLLWNRLEG 114 (225)
Q Consensus 48 ~~L~~L~l~~n~i~~-~~---~~~~~~~~~~l~~L~~L~l~~~~l~---------~~~~~~l~~l~~L~~L~l~~n~~~~ 114 (225)
..++.|.+..+.+.+ .. -....+.+..+++|+.|.+...... ..+...+..+|+|+.|++.++.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 456788887555431 11 1111223557899999999765331 124566778899999999887322
Q ss_pred ccchhhhccCCCCceeecCCCCCcHHHHHHHHh-hCCCCCEEeccc--cccccc-----cccCCC--CCCCCCcEEEccC
Q 045865 115 SIDVKELHNFTNLEYLTLESSSLHISLLQSIAS-IFPSLKNLSMSF--CEVNGV-----VRGQGF--PHFKSLEHFDMRF 184 (225)
Q Consensus 115 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~--n~~~~~-----~~~~~~--~~~~~L~~l~l~~ 184 (225)
.++ .+ .+++|+.|++..+.+.......+.. .+|+|+.|+++. +...+. +.. .+ ..+++|+.|+++.
T Consensus 186 ~l~--~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~~ 261 (362)
T 2ra8_A 186 SIG--KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIVD 261 (362)
T ss_dssp BCC--SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEES
T ss_pred eec--cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCCC
Confidence 233 23 3789999999999988766666652 289999999863 221111 111 22 3588999999999
Q ss_pred CccccchhHHHHHhh--cCCCCcEEEccCCcCCCccchhhc
Q 045865 185 ARIALNTSFLQIIGE--SMPSLKYLLLSYSTLGTNSSRILH 223 (225)
Q Consensus 185 n~i~~~~~~~~~l~~--~~~~L~~L~l~~n~l~~~~~~~~~ 223 (225)
|.+ .+..+..+.. .+++|+.|+|+.|.+++..+..+.
T Consensus 262 ~~i--~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~ 300 (362)
T 2ra8_A 262 AEE--QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL 300 (362)
T ss_dssp CTT--HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHH
T ss_pred CCC--chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHH
Confidence 954 3444444542 378999999999999986655443
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.93 E-value=1.5e-09 Score=88.26 Aligned_cols=101 Identities=13% Similarity=0.140 Sum_probs=77.2
Q ss_pred ceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCC
Q 045865 21 RVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 100 (225)
Q Consensus 21 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~ 100 (225)
.++.+.+..+ +. .+...+|.++ .|+.+.+.. .+...... .|..+++|+.+++..+.++......|. ..
T Consensus 136 ~L~~i~l~~~-i~----~I~~~aF~~~-~L~~i~lp~-~l~~I~~~----aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~ 203 (401)
T 4fdw_A 136 QIAKVVLNEG-LK----SIGDMAFFNS-TVQEIVFPS-TLEQLKED----IFYYCYNLKKADLSKTKITKLPASTFV-YA 203 (401)
T ss_dssp CCSEEECCTT-CC----EECTTTTTTC-CCCEEECCT-TCCEECSS----TTTTCTTCCEEECTTSCCSEECTTTTT-TC
T ss_pred CccEEEeCCC-cc----EECHHhcCCC-CceEEEeCC-CccEehHH----HhhCcccCCeeecCCCcceEechhhEe-ec
Confidence 4677777665 43 6677788874 699999986 56554444 689999999999999999876666665 68
Q ss_pred CCCEEEcCCCCCCCccchhhhccCCCCceeecCCC
Q 045865 101 SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESS 135 (225)
Q Consensus 101 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~ 135 (225)
+|+.+.+..+ +. .++...|..+.+|+.+.+..+
T Consensus 204 ~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 204 GIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp CCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT
T ss_pred ccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC
Confidence 9999999865 44 666668888888988888764
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.65 E-value=2.4e-08 Score=76.37 Aligned_cols=82 Identities=28% Similarity=0.368 Sum_probs=57.1
Q ss_pred hcCCCCCEEECCCCCCCh--hhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHH-------HH
Q 045865 73 SRLNNLKMLNLSGNSFNN--SILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISL-------LQ 143 (225)
Q Consensus 73 ~~l~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-------~~ 143 (225)
..+++|+.|+|++|.+++ .++..+..+++|+.|++++|.+.+......+..+ +|+.|++.+|.+.+.. ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 468889999999998876 3445667888999999999988733122233333 8888899888876421 12
Q ss_pred HHHhhCCCCCEEe
Q 045865 144 SIASIFPSLKNLS 156 (225)
Q Consensus 144 ~~~~~~~~L~~L~ 156 (225)
.+.. +++|+.|+
T Consensus 246 il~~-~P~L~~LD 257 (267)
T 3rw6_A 246 IRER-FPKLLRLD 257 (267)
T ss_dssp HHHH-CTTCCEES
T ss_pred HHHH-CcccCeEC
Confidence 3444 88888875
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.60 E-value=6.9e-08 Score=68.92 Aligned_cols=102 Identities=16% Similarity=0.254 Sum_probs=54.2
Q ss_pred CCCEEEcCCCCCCCccchhhhccCCCCceeecCCCC-CcHHHHHHHHhhC----CCCCEEeccccc-cccccccCCCCCC
Q 045865 101 SLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSS-LHISLLQSIASIF----PSLKNLSMSFCE-VNGVVRGQGFPHF 174 (225)
Q Consensus 101 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~~----~~L~~L~l~~n~-~~~~~~~~~~~~~ 174 (225)
.|+.|+++++.++ ......+..+++|+.|+|++|. +++.....+.. + ++|++|++++|. +++.... .+.++
T Consensus 62 ~L~~LDLs~~~It-d~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~-~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSCIM-SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQ-LENLQKSMLEMEIISCGNVTDKGII-ALHHF 138 (176)
T ss_dssp CEEEEEEESCCCC-GGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHT-CHHHHHHCCEEEEESCTTCCHHHHH-HGGGC
T ss_pred eEeEEeCcCCCcc-HHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHh-cccccCCCCEEEcCCCCcCCHHHHH-HHhcC
Confidence 4555555555544 2222244556666666666653 55555555544 2 357777777764 5543333 45566
Q ss_pred CCCcEEEccCCc-cccchhHHHHHhhcCCCCc
Q 045865 175 KSLEHFDMRFAR-IALNTSFLQIIGESMPSLK 205 (225)
Q Consensus 175 ~~L~~l~l~~n~-i~~~~~~~~~l~~~~~~L~ 205 (225)
++|+.|++++|. +...+.....+.+.+|+++
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 777777777763 3222223333444366654
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.45 E-value=2.2e-07 Score=66.36 Aligned_cols=83 Identities=20% Similarity=0.360 Sum_probs=42.8
Q ss_pred CccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCC-CChhhHHhhhcC----CCCCEEEcCCCC-CCCccchhhhc
Q 045865 49 QLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNS-FNNSILSSLTHL----SSLRSLNLLWNR-LEGSIDVKELH 122 (225)
Q Consensus 49 ~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l----~~L~~L~l~~n~-~~~~~~~~~~~ 122 (225)
.|+.|+++++.+....-. .+..+++|++|+|++|. +++.....+..+ ++|++|++++|. ++ ......+.
T Consensus 62 ~L~~LDLs~~~Itd~GL~----~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT-D~Gl~~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFD----HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT-DKGIIALH 136 (176)
T ss_dssp CEEEEEEESCCCCGGGGG----GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC-HHHHHHGG
T ss_pred eEeEEeCcCCCccHHHHH----HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC-HHHHHHHh
Confidence 466666666655443222 35566666666666653 555444444443 245666665553 33 22222444
Q ss_pred cCCCCceeecCCCC
Q 045865 123 NFTNLEYLTLESSS 136 (225)
Q Consensus 123 ~l~~L~~l~l~~~~ 136 (225)
.+++|+.|++.++.
T Consensus 137 ~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 137 HFRNLKYLFLSDLP 150 (176)
T ss_dssp GCTTCCEEEEESCT
T ss_pred cCCCCCEEECCCCC
Confidence 55555555555543
No 154
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.38 E-value=6.1e-06 Score=59.93 Aligned_cols=76 Identities=17% Similarity=0.164 Sum_probs=45.5
Q ss_pred HHhhhhhcCCCCccEEEccCC-cccCcchhhHHHHHhcCCCCCEEECCCCCCChhh----HHhhhcCCCCCEEEcCCCCC
Q 045865 38 YLNASLFTPFQQLESLDLTQN-KIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSI----LSSLTHLSSLRSLNLLWNRL 112 (225)
Q Consensus 38 ~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~----~~~l~~l~~L~~L~l~~n~~ 112 (225)
......+.+-+.|++|+++++ .|.......+++.+..-++|+.|+|++|.+.... ...+..-..|++|++++|.+
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 344455566677777777764 6654444444556666677777777777775432 33333445566666666665
Q ss_pred C
Q 045865 113 E 113 (225)
Q Consensus 113 ~ 113 (225)
.
T Consensus 111 g 111 (197)
T 1pgv_A 111 T 111 (197)
T ss_dssp C
T ss_pred C
Confidence 4
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.35 E-value=2.7e-06 Score=61.85 Aligned_cols=118 Identities=13% Similarity=0.113 Sum_probs=86.0
Q ss_pred cCceEEeecccc-ccccchhHHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhH----
Q 045865 19 TGRVIALDLSYI-YSGEYSWYLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSIL---- 93 (225)
Q Consensus 19 ~~~v~~l~l~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~---- 93 (225)
...+++|+|+++ ++...+.+..+..+..-+.|+.|+|++|.|.......+.+.+..-+.|++|+|+.|.|.....
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 467899999985 888766677788888899999999999999876666666778889999999999999986433
Q ss_pred HhhhcCCCCCEEEcCCCCC---CCc----cchhhhccCCCCceeecCCCCC
Q 045865 94 SSLTHLSSLRSLNLLWNRL---EGS----IDVKELHNFTNLEYLTLESSSL 137 (225)
Q Consensus 94 ~~l~~l~~L~~L~l~~n~~---~~~----~~~~~~~~l~~L~~l~l~~~~~ 137 (225)
..+..-..|+.|++.++.. ... +. +.+..-++|+.|++..+.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia-~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMM-MAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHH-HHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHH-HHHHhCCCcCeEeccCCCc
Confidence 3444556788888875532 211 11 1344445677777765543
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=1.9e-06 Score=65.84 Aligned_cols=83 Identities=29% Similarity=0.329 Sum_probs=63.0
Q ss_pred cCCCCccEEEccCCcccCc--chhhHHHHHhcCCCCCEEECCCCCCChh-hHHhhhcCCCCCEEEcCCCCCCCccch---
Q 045865 45 TPFQQLESLDLTQNKIAGC--VENEGIERLSRLNNLKMLNLSGNSFNNS-ILSSLTHLSSLRSLNLLWNRLEGSIDV--- 118 (225)
Q Consensus 45 ~~l~~L~~L~l~~n~i~~~--~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~--- 118 (225)
.++++|++|++++|.+... ++. .+..+++|+.|+|++|.+.+. ....+..+ +|+.|++.+|.+.+..+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~----~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSS----IVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTT----HHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchh----HHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchh
Confidence 5689999999999999873 234 467899999999999999864 22333344 999999999998754431
Q ss_pred ---hhhccCCCCceeec
Q 045865 119 ---KELHNFTNLEYLTL 132 (225)
Q Consensus 119 ---~~~~~l~~L~~l~l 132 (225)
..+..+++|+.|+-
T Consensus 242 y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 242 YISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHCTTCCEESS
T ss_pred HHHHHHHHCcccCeECC
Confidence 24667888888764
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.77 E-value=3.7e-05 Score=62.09 Aligned_cols=85 Identities=18% Similarity=0.208 Sum_probs=40.3
Q ss_pred hhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCC
Q 045865 95 SLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHF 174 (225)
Q Consensus 95 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 174 (225)
.+..+.+|+.+.+..+ +. .++..++..+.+|+.+.+..+ +......++.. |.+|+.+.+..+ ++ .+...+|.+|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~-c~~L~~i~lp~~-l~-~I~~~aF~~C 365 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRG-CTSLSNINFPLS-LR-KIGANAFQGC 365 (394)
T ss_dssp TTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTT-CTTCCEECCCTT-CC-EECTTTBTTC
T ss_pred cccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccC-CCCCCEEEECcc-cc-EehHHHhhCC
Confidence 3444555555555443 22 333335555555665555432 22111233333 556666655544 33 2333355566
Q ss_pred CCCcEEEccCC
Q 045865 175 KSLEHFDMRFA 185 (225)
Q Consensus 175 ~~L~~l~l~~n 185 (225)
.+|+.+.+..+
T Consensus 366 ~~L~~i~lp~~ 376 (394)
T 4fs7_A 366 INLKKVELPKR 376 (394)
T ss_dssp TTCCEEEEEGG
T ss_pred CCCCEEEECCC
Confidence 66666655443
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.60 E-value=0.00011 Score=59.37 Aligned_cols=131 Identities=10% Similarity=0.163 Sum_probs=76.3
Q ss_pred HHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCC
Q 045865 71 RLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFP 150 (225)
Q Consensus 71 ~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 150 (225)
+|..+..|+.+.+.... .......|..+..|+.+.+... +. .++...|..+.+|+.+.+..+ +......++.. |.
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~-C~ 334 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSSR-IT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAG-CE 334 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CT
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCCCc-cc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhC-CC
Confidence 46667777777776543 2334456667778888887643 33 555557777888888888654 33222344555 78
Q ss_pred CCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCCCcEEEccCCcC
Q 045865 151 SLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPSLKYLLLSYSTL 214 (225)
Q Consensus 151 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~L~~L~l~~n~l 214 (225)
+|+.+.+..+ ++ .+...+|.+|.+|+.+++.++.. ....+.. +..|+.+.+..+.+
T Consensus 335 ~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~-----~~~~~~~-~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 335 QLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRS-----QWNAIST-DSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHH-----HHHTCBC-CCCC----------
T ss_pred CCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCcee-----ehhhhhc-cCCCCEEEeCCCCE
Confidence 8888888654 44 33444788888888888887732 1234555 77788877766544
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.53 E-value=9.1e-05 Score=59.77 Aligned_cols=102 Identities=16% Similarity=0.148 Sum_probs=74.8
Q ss_pred HHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhccCCCCceeecCCCCCcHHHHHHHHhhCC
Q 045865 71 RLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHNFTNLEYLTLESSSLHISLLQSIASIFP 150 (225)
Q Consensus 71 ~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 150 (225)
.+..+.+|+.+.+..+ +.......|..+.+|+.+++..+ +. .++..+|..+.+|+.+.+..+ +......++.. |.
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~-C~ 366 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG-CI 366 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTT-CT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhC-CC
Confidence 4677888888888754 55555677889999999999765 44 666668999999999999766 44233345666 99
Q ss_pred CCCEEeccccccccccccCCCCCCCCCcEE
Q 045865 151 SLKNLSMSFCEVNGVVRGQGFPHFKSLEHF 180 (225)
Q Consensus 151 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l 180 (225)
+|+.+.+..+- + .... .|.++++|+.+
T Consensus 367 ~L~~i~lp~~~-~-~~~~-~F~~c~~L~~I 393 (394)
T 4fs7_A 367 NLKKVELPKRL-E-QYRY-DFEDTTKFKWI 393 (394)
T ss_dssp TCCEEEEEGGG-G-GGGG-GBCTTCEEEEE
T ss_pred CCCEEEECCCC-E-Ehhh-eecCCCCCcEE
Confidence 99999997653 2 2233 68888888764
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.51 E-value=0.00014 Score=58.63 Aligned_cols=135 Identities=13% Similarity=0.138 Sum_probs=92.8
Q ss_pred HHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccc
Q 045865 38 YLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSID 117 (225)
Q Consensus 38 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 117 (225)
.+...+|..++.|+.+.+.++-. ..... .|..+..|+.+.+.. .+.......|..+.+|+.+.+..+ +. .+.
T Consensus 255 ~i~~~aF~~c~~L~~i~lp~~~~-~I~~~----aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~ 326 (394)
T 4gt6_A 255 RIETHAFDSCAYLASVKMPDSVV-SIGTG----AFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QIL 326 (394)
T ss_dssp EECTTTTTTCSSCCEEECCTTCC-EECTT----TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EEC
T ss_pred EcccceeeecccccEEecccccc-eecCc----ccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-Eeh
Confidence 44556788999999999876543 22333 588899999999974 466556678889999999999876 43 566
Q ss_pred hhhhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCc
Q 045865 118 VKELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFAR 186 (225)
Q Consensus 118 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~ 186 (225)
..+|..+.+|+.+.+..+ +......++.. |.+|+.+.+.++.... . .+..+.+|+.+.+..+.
T Consensus 327 ~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~-C~~L~~i~~~~~~~~~---~-~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 327 DDAFAGCEQLERIAIPSS-VTKIPESAFSN-CTALNNIEYSGSRSQW---N-AISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCBCCGGGGTT-CTTCCEEEESSCHHHH---H-TCBCCCCC---------
T ss_pred HhHhhCCCCCCEEEECcc-cCEEhHhHhhC-CCCCCEEEECCceeeh---h-hhhccCCCCEEEeCCCC
Confidence 668999999999999654 33223355666 9999999998876431 2 56778888888877663
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.45 E-value=0.00018 Score=57.66 Aligned_cols=135 Identities=13% Similarity=0.184 Sum_probs=81.9
Q ss_pred hhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchh
Q 045865 40 NASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVK 119 (225)
Q Consensus 40 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 119 (225)
....+..+..++.+.+..+ +...... .+..+..|+.+.+..+ ++......+..+..|+.+.+..+ +. .++..
T Consensus 209 ~~~~f~~~~~l~~i~~~~~-~~~i~~~----~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~ 280 (379)
T 4h09_A 209 TAYGFSYGKNLKKITITSG-VTTLGDG----AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYL 280 (379)
T ss_dssp CTTTTTTCSSCSEEECCTT-CCEECTT----TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTT
T ss_pred eecccccccccceeeeccc-eeEEccc----cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccc
Confidence 3445566677777776543 2222222 4666777777777654 44444556666777777777654 32 44444
Q ss_pred hhccCCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCC
Q 045865 120 ELHNFTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFA 185 (225)
Q Consensus 120 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n 185 (225)
.+..+.+|+.+.+..+.+.......+.. |.+|+.+.+..+ ++ .+...+|.+|.+|+.+.+..+
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~-c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMD-CVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTT-CTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccccccccceehhhhhcC-CCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc
Confidence 6777777777777766554333344555 777888877654 43 334447777777777777544
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.37 E-value=0.00034 Score=55.97 Aligned_cols=154 Identities=13% Similarity=0.117 Sum_probs=100.8
Q ss_pred hcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCCChhhHHhhhcCCCCCEEEcCCCCCCCccchhhhcc
Q 045865 44 FTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLLWNRLEGSIDVKELHN 123 (225)
Q Consensus 44 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 123 (225)
+.....+..+.+..... ..... .+..+..|+.+.+..+ +.......+..+..|+.+.+..+ +. .+....+..
T Consensus 190 ~~~~~~~~~~~~~~~~~-~i~~~----~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~ 261 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTVK-TVTAY----GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQN 261 (379)
T ss_dssp CCTTCCCSEEECCTTCC-EECTT----TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTT
T ss_pred cccccccccccccccee-EEeec----ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccce
Confidence 33445556665544322 11222 4667888999888654 44445567778889999998776 33 455557778
Q ss_pred CCCCceeecCCCCCcHHHHHHHHhhCCCCCEEeccccccccccccCCCCCCCCCcEEEccCCccccchhHHHHHhhcCCC
Q 045865 124 FTNLEYLTLESSSLHISLLQSIASIFPSLKNLSMSFCEVNGVVRGQGFPHFKSLEHFDMRFARIALNTSFLQIIGESMPS 203 (225)
Q Consensus 124 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~~~l~~~~~~ 203 (225)
+.+|+.+.+..+ +.......+.. +.+|+.+.+..+.++ .+....|.+|.+|+.+.+..+ +...+ ..++.. |.+
T Consensus 262 ~~~l~~i~l~~~-i~~i~~~aF~~-c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~--~~aF~~-C~~ 334 (379)
T 4h09_A 262 CTALKTLNFYAK-VKTVPYLLCSG-CSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQ--VYAFKN-CKA 334 (379)
T ss_dssp CTTCCEEEECCC-CSEECTTTTTT-CTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEEC--TTTTTT-CTT
T ss_pred eehhcccccccc-ceecccccccc-ccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEH--HHHhhC-CCC
Confidence 888998888654 32222234455 899999999888776 455558999999999998755 22111 235666 888
Q ss_pred CcEEEccCC
Q 045865 204 LKYLLLSYS 212 (225)
Q Consensus 204 L~~L~l~~n 212 (225)
|+.+.+..+
T Consensus 335 L~~i~ip~~ 343 (379)
T 4h09_A 335 LSTISYPKS 343 (379)
T ss_dssp CCCCCCCTT
T ss_pred CCEEEECCc
Confidence 998887544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.15 E-value=0.011 Score=39.77 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=14.4
Q ss_pred ccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCCCC
Q 045865 50 LESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGNSF 88 (225)
Q Consensus 50 L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~~l 88 (225)
++.|+|++|.|....+. .|..+++|+.|+|.+|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPG----LLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTT----TGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChh----hhhhccccCEEEecCCCe
Confidence 44444444444432222 233444444444444433
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.43 E-value=0.0074 Score=40.61 Aligned_cols=39 Identities=18% Similarity=0.081 Sum_probs=35.1
Q ss_pred cCceEEeeccccccccchhHHhhhhhcCCCCccEEEccCCccc
Q 045865 19 TGRVIALDLSYIYSGEYSWYLNASLFTPFQQLESLDLTQNKIA 61 (225)
Q Consensus 19 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~ 61 (225)
+..++.|+|++|++. .++...|..+++|++|+|.+|++.
T Consensus 30 p~~l~~L~Ls~N~l~----~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 30 PVDTTELVLTGNNLT----ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp CTTCSEEECTTSCCS----SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CcCCCEEECCCCcCC----ccChhhhhhccccCEEEecCCCee
Confidence 346899999999998 788899999999999999999875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=57.65 E-value=5.4 Score=25.01 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=30.9
Q ss_pred HHhhhhhcCCCCccEEEccCCcccCcchhhHHHHHhcCCCCCEEECCCC
Q 045865 38 YLNASLFTPFQQLESLDLTQNKIAGCVENEGIERLSRLNNLKMLNLSGN 86 (225)
Q Consensus 38 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~l~~L~~L~l~~~ 86 (225)
.+...+|.++..|+.+.|..+ +...... +|..+.+|+.+.+.+.
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~----aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDG----MFSGCTALEKLILTGE 53 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTT----SSTTCTTCCCEEECCS
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHH----HHhccCCccEEEEcCC
Confidence 566677888888888888664 4443444 5778888888877654
Done!