BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045866
         (406 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YAY|A Chain A, The Crystal Structure Of Leishmania Major Dutpase In
           Complex With Substrate Analogue Dupnpp
 pdb|2YAZ|A Chain A, The Crystal Structure Of Leishmania Major Dutpase In
           Complex Dump
 pdb|2YAZ|B Chain B, The Crystal Structure Of Leishmania Major Dutpase In
           Complex Dump
 pdb|2YAZ|D Chain D, The Crystal Structure Of Leishmania Major Dutpase In
           Complex Dump
 pdb|2YAZ|E Chain E, The Crystal Structure Of Leishmania Major Dutpase In
           Complex Dump
 pdb|2YB0|A Chain A, The Crystal Structure Of Leishmania Major Dutpase In
           Complex Deoxyuridine
 pdb|2YB0|B Chain B, The Crystal Structure Of Leishmania Major Dutpase In
           Complex Deoxyuridine
 pdb|2YB0|D Chain D, The Crystal Structure Of Leishmania Major Dutpase In
           Complex Deoxyuridine
 pdb|2YB0|E Chain E, The Crystal Structure Of Leishmania Major Dutpase In
           Complex Deoxyuridine
          Length = 271

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 251 GPKQKKQRNINVQGAYLHVLGDSIQSVGVMIGGAIIWYKPEWKIIDLICTLAFSAIVLGT 310
           GP  K+ R+ N+ GA LH L +    +  MI        P W+ +  +   A  AI + +
Sbjct: 1   GPAMKRARSANIPGAILHSLAELQDGLNAMID-------PSWRAVRSLDNWAL-AITMES 52

Query: 311 T 311
           T
Sbjct: 53  T 53


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,295,882
Number of Sequences: 62578
Number of extensions: 369476
Number of successful extensions: 756
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 754
Number of HSP's gapped (non-prelim): 2
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)