Query 045866
Match_columns 406
No_of_seqs 210 out of 1532
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 06:19:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045866.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045866hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1482 Zn2+ transporter [Inor 100.0 6.9E-66 1.5E-70 496.5 28.4 316 43-404 52-368 (379)
2 COG1230 CzcD Co/Zn/Cd efflux s 100.0 1.2E-57 2.5E-62 436.6 34.5 276 63-403 20-295 (296)
3 PRK03557 zinc transporter ZitB 100.0 6.1E-53 1.3E-57 414.7 37.2 275 64-403 18-293 (312)
4 COG0053 MMT1 Predicted Co/Zn/C 100.0 9.8E-50 2.1E-54 389.3 35.9 283 58-404 6-292 (304)
5 PRK09509 fieF ferrous iron eff 100.0 1.3E-49 2.8E-54 389.3 35.4 278 62-403 8-288 (299)
6 KOG1484 Putative Zn2+ transpor 100.0 1.5E-48 3.3E-53 371.2 30.2 309 64-403 34-348 (354)
7 KOG1483 Zn2+ transporter ZNT1 100.0 2E-49 4.4E-54 383.6 18.6 333 65-403 9-371 (404)
8 TIGR01297 CDF cation diffusion 100.0 1.3E-46 2.9E-51 362.0 30.9 263 77-402 2-268 (268)
9 PF01545 Cation_efflux: Cation 100.0 2.8E-45 6E-50 355.4 13.3 279 67-405 1-284 (284)
10 KOG1485 Mitochondrial Fe2+ tra 100.0 1.4E-39 2.9E-44 319.7 27.7 279 60-405 110-403 (412)
11 COG3965 Predicted Co/Zn/Cd cat 99.9 3.7E-26 8.1E-31 210.4 21.3 281 62-404 17-311 (314)
12 KOG2802 Membrane protein HUEL 99.7 1.7E-17 3.6E-22 159.9 14.1 225 65-372 207-434 (503)
13 COG0053 MMT1 Predicted Co/Zn/C 98.2 1.7E-05 3.7E-10 78.0 11.8 92 63-162 119-210 (304)
14 TIGR01297 CDF cation diffusion 98.0 7.2E-05 1.6E-09 71.9 11.8 92 65-164 98-189 (268)
15 PRK09509 fieF ferrous iron eff 97.9 0.00013 2.8E-09 71.6 12.3 91 65-163 119-209 (299)
16 PRK03557 zinc transporter ZitB 97.2 0.0036 7.9E-08 61.8 11.2 73 85-164 145-217 (312)
17 KOG1485 Mitochondrial Fe2+ tra 95.7 0.033 7.3E-07 56.2 7.5 90 65-162 231-320 (412)
18 PRK10019 nickel/cobalt efflux 93.7 3.1 6.6E-05 40.5 15.3 28 131-158 85-112 (279)
19 PF01545 Cation_efflux: Cation 92.0 0.12 2.6E-06 49.8 3.0 90 67-163 109-201 (284)
20 COG1230 CzcD Co/Zn/Cd efflux s 90.7 3.3 7.2E-05 40.6 11.5 73 257-329 45-123 (296)
21 PF14535 AMP-binding_C_2: AMP- 89.8 3.2 6.9E-05 33.4 9.0 71 330-402 4-79 (96)
22 PF02535 Zip: ZIP Zinc transpo 89.7 21 0.00045 34.7 18.7 32 130-161 36-67 (317)
23 PF02535 Zip: ZIP Zinc transpo 88.2 8.5 0.00018 37.4 12.6 70 91-161 202-287 (317)
24 COG3696 Putative silver efflux 87.2 3 6.5E-05 46.5 9.1 67 333-399 580-656 (1027)
25 COG4858 Uncharacterized membra 87.1 16 0.00035 33.3 12.2 48 144-191 102-150 (226)
26 PF09580 Spore_YhcN_YlaJ: Spor 85.3 4.1 8.9E-05 36.5 7.9 69 328-401 73-142 (177)
27 PF03780 Asp23: Asp23 family; 77.5 20 0.00043 29.1 8.6 49 351-400 50-105 (108)
28 PF01883 DUF59: Domain of unkn 72.3 20 0.00044 26.8 6.9 51 347-397 22-72 (72)
29 KOG1484 Putative Zn2+ transpor 71.4 12 0.00026 37.2 6.6 60 98-164 212-271 (354)
30 COG4531 ZnuA ABC-type Zn2+ tra 67.4 4.1 9E-05 39.2 2.4 36 366-402 233-269 (318)
31 TIGR02945 SUF_assoc FeS assemb 67.1 54 0.0012 26.2 8.8 48 356-403 33-81 (99)
32 KOG1483 Zn2+ transporter ZNT1 66.6 41 0.0009 34.2 9.3 72 256-327 31-108 (404)
33 PRK10019 nickel/cobalt efflux 66.5 74 0.0016 31.0 10.9 74 82-160 204-278 (279)
34 TIGR03406 FeS_long_SufT probab 65.7 47 0.001 30.0 8.8 45 360-404 114-158 (174)
35 TIGR02898 spore_YhcN_YlaJ spor 63.7 24 0.00052 31.4 6.4 68 331-402 55-124 (158)
36 PF09877 DUF2104: Predicted me 60.7 68 0.0015 26.1 7.8 20 128-147 78-97 (99)
37 PF07444 Ycf66_N: Ycf66 protei 58.2 32 0.0007 27.2 5.6 47 268-316 33-82 (84)
38 TIGR02159 PA_CoA_Oxy4 phenylac 57.6 54 0.0012 28.7 7.5 46 357-403 23-68 (146)
39 PF11381 DUF3185: Protein of u 54.8 52 0.0011 24.3 5.8 47 138-184 8-57 (59)
40 COG4956 Integral membrane prot 53.4 2.4E+02 0.0052 28.0 13.0 38 291-328 106-143 (356)
41 PF06570 DUF1129: Protein of u 51.8 1.9E+02 0.0042 26.5 12.4 20 70-89 86-105 (206)
42 KOG2877 sn-1,2-diacylglycerol 50.9 1.7E+02 0.0037 29.8 10.7 34 252-285 106-139 (389)
43 PF03824 NicO: High-affinity n 50.7 2.4E+02 0.0051 27.1 15.5 14 136-149 43-56 (282)
44 COG4035 Predicted membrane pro 50.2 9.7 0.00021 30.5 1.5 21 128-148 85-105 (108)
45 COG2215 ABC-type uncharacteriz 50.1 2.6E+02 0.0057 27.5 17.6 11 314-324 259-269 (303)
46 PF07290 DUF1449: Protein of u 48.6 74 0.0016 29.5 7.2 27 66-92 7-33 (202)
47 COG1279 Lysine efflux permease 45.9 1.1E+02 0.0023 28.4 7.7 76 259-337 34-110 (202)
48 PRK02983 lysS lysyl-tRNA synth 43.8 6E+02 0.013 29.8 16.7 25 377-402 299-323 (1094)
49 PF03147 FDX-ACB: Ferredoxin-f 43.5 75 0.0016 25.2 5.8 67 327-393 15-92 (94)
50 TIGR00439 ftsX putative protei 42.7 1.6E+02 0.0034 29.1 9.1 69 328-396 77-162 (309)
51 PF11712 Vma12: Endoplasmic re 40.9 1.5E+02 0.0033 25.6 7.7 22 66-87 76-97 (142)
52 PF01390 SEA: SEA domain; Int 40.8 1.4E+02 0.003 23.7 7.2 43 346-388 51-95 (107)
53 PF01037 AsnC_trans_reg: AsnC 38.3 95 0.0021 22.7 5.4 60 331-399 11-70 (74)
54 PRK10555 aminoglycoside/multid 37.4 1.2E+02 0.0027 35.1 8.4 50 334-388 64-113 (1037)
55 PF02038 ATP1G1_PLM_MAT8: ATP1 37.2 73 0.0016 22.7 4.1 31 122-153 4-34 (50)
56 PRK10263 DNA translocase FtsK; 36.9 8.1E+02 0.018 29.4 17.1 8 291-298 180-187 (1355)
57 PF14654 Epiglycanin_C: Mucin, 36.7 1.8E+02 0.0038 23.7 6.7 17 193-209 60-76 (106)
58 PRK15127 multidrug efflux syst 36.4 1.3E+02 0.0028 34.9 8.4 49 335-388 65-113 (1049)
59 cd02413 40S_S3_KH K homology R 36.4 1.7E+02 0.0037 22.8 6.6 57 346-403 18-78 (81)
60 PRK00701 manganese transport p 35.5 5.3E+02 0.011 26.8 16.6 61 127-188 163-232 (439)
61 PRK05783 hypothetical protein; 34.6 1.2E+02 0.0027 24.0 5.5 59 333-401 21-83 (84)
62 PRK10503 multidrug efflux syst 33.6 1.5E+02 0.0033 34.4 8.4 49 334-388 75-123 (1040)
63 PRK09579 multidrug efflux prot 33.2 1.5E+02 0.0033 34.3 8.2 48 334-387 66-113 (1017)
64 PRK09577 multidrug efflux prot 32.1 1.7E+02 0.0038 33.8 8.5 49 334-388 64-112 (1032)
65 PF08002 DUF1697: Protein of u 31.7 1.4E+02 0.0031 25.6 6.0 53 330-393 19-71 (137)
66 PF02532 PsbI: Photosystem II 30.8 1.1E+02 0.0024 20.1 3.8 24 66-89 3-26 (36)
67 COG2177 FtsX Cell division pro 30.2 3E+02 0.0065 27.1 8.6 27 323-349 65-91 (297)
68 PF09685 Tic20: Tic20-like pro 29.1 3E+02 0.0064 21.9 9.1 26 102-127 79-104 (109)
69 TIGR00915 2A0602 The (Largely 28.4 2.2E+02 0.0047 33.1 8.5 49 335-388 65-113 (1044)
70 PF07136 DUF1385: Protein of u 28.0 5.3E+02 0.012 24.5 13.8 30 131-160 40-69 (236)
71 COG4531 ZnuA ABC-type Zn2+ tra 28.0 48 0.001 32.2 2.6 17 224-240 141-157 (318)
72 PRK05812 secD preprotein trans 27.7 7.5E+02 0.016 26.2 11.6 25 91-115 325-349 (498)
73 KOG4016 Synaptic vesicle prote 27.6 5.2E+02 0.011 24.2 11.1 93 66-163 74-174 (233)
74 PRK10747 putative protoheme IX 27.3 73 0.0016 32.3 4.0 51 112-162 17-68 (398)
75 KOG1558 Fe2+/Zn2+ regulated tr 27.3 6.4E+02 0.014 25.2 11.3 54 135-188 266-326 (327)
76 PRK11670 antiporter inner memb 27.2 3.3E+02 0.0071 27.5 8.6 69 333-401 15-89 (369)
77 PF03806 ABG_transport: AbgT p 27.2 7.4E+02 0.016 26.3 11.3 17 169-185 381-397 (502)
78 PF02700 PurS: Phosphoribosylf 26.9 1.9E+02 0.0042 22.5 5.4 61 333-400 19-79 (80)
79 COG0841 AcrB Cation/multidrug 26.8 2.5E+02 0.0054 32.6 8.4 89 294-388 7-113 (1009)
80 PF01810 LysE: LysE type trans 26.6 2.6E+02 0.0057 24.8 7.2 68 255-324 20-87 (191)
81 COG0581 PstA ABC-type phosphat 26.6 4.6E+02 0.0099 25.8 9.1 58 263-320 107-168 (292)
82 PRK10263 DNA translocase FtsK; 26.5 1E+03 0.022 28.7 13.0 6 65-70 20-25 (1355)
83 PRK10614 multidrug efflux syst 25.8 2.3E+02 0.0051 32.8 8.1 49 334-388 66-114 (1025)
84 PRK11026 ftsX cell division AB 25.6 3.8E+02 0.0082 26.4 8.6 69 328-396 77-162 (309)
85 PF04865 Baseplate_J: Baseplat 25.4 3.1E+02 0.0068 25.4 7.7 61 323-386 112-173 (243)
86 PF01566 Nramp: Natural resist 25.4 6.7E+02 0.015 24.8 18.8 62 127-188 111-178 (358)
87 PRK11023 outer membrane lipopr 24.9 1.3E+02 0.0027 27.5 4.7 69 322-400 81-150 (191)
88 MTH00140 COX2 cytochrome c oxi 24.9 3.4E+02 0.0073 25.4 7.8 29 122-150 51-79 (228)
89 PF10934 DUF2634: Protein of u 24.3 3E+02 0.0064 22.8 6.4 50 319-369 53-107 (112)
90 PLN02601 beta-carotene hydroxy 24.1 6.7E+02 0.015 24.4 9.4 56 135-191 98-156 (303)
91 COG1183 PssA Phosphatidylserin 24.1 6.2E+02 0.013 24.0 10.8 67 253-323 55-121 (234)
92 PF06796 NapE: Periplasmic nit 24.0 2.2E+02 0.0048 20.8 4.8 10 57-66 11-20 (56)
93 PF06157 DUF973: Protein of un 24.0 6.8E+02 0.015 24.4 14.3 14 302-315 162-175 (285)
94 PRK15385 magnesium transport p 23.7 6.3E+02 0.014 23.8 13.4 55 345-401 169-224 (225)
95 PF15220 HILPDA: Hypoxia-induc 23.6 2.5E+02 0.0054 20.3 4.9 33 137-169 7-40 (63)
96 TIGR00540 hemY_coli hemY prote 23.1 87 0.0019 31.8 3.7 51 112-162 17-68 (409)
97 PF07687 M20_dimer: Peptidase 23.1 1.4E+02 0.003 23.6 4.2 32 358-389 76-107 (111)
98 TIGR01129 secD protein-export 22.9 6.5E+02 0.014 25.8 9.9 27 90-116 239-265 (397)
99 COG0390 ABC-type uncharacteriz 22.8 6.9E+02 0.015 24.0 10.6 80 259-341 86-181 (256)
100 PRK10599 calcium/sodium:proton 22.8 8.2E+02 0.018 24.9 17.2 105 72-185 76-185 (366)
101 PF00873 ACR_tran: AcrB/AcrD/A 22.5 1.5E+02 0.0032 34.2 5.8 89 297-388 9-112 (1021)
102 COG3158 Kup K+ transporter [In 22.5 8.1E+02 0.018 26.5 10.5 75 64-158 248-323 (627)
103 PF11654 DUF2665: Protein of u 22.4 84 0.0018 22.1 2.3 17 293-309 5-21 (47)
104 TIGR00473 pssA CDP-diacylglyce 22.0 2.4E+02 0.0052 24.7 5.7 62 253-319 40-101 (151)
105 PRK09304 arginine exporter pro 21.8 3.8E+02 0.0082 24.4 7.4 56 261-318 36-91 (207)
106 PF09323 DUF1980: Domain of un 21.0 3.2E+02 0.0069 24.5 6.5 9 155-163 22-30 (182)
107 PF04972 BON: BON domain; Int 20.7 47 0.001 24.0 0.8 29 322-350 30-58 (64)
108 KOG0255 Synaptic vesicle trans 20.5 9.5E+02 0.021 24.8 13.4 58 271-330 212-269 (521)
109 TIGR00820 zip ZIP zinc/iron tr 20.5 3.3E+02 0.0071 27.0 7.0 154 104-275 28-189 (324)
110 PF07069 PRRSV_2b: Porcine rep 20.2 3.7E+02 0.008 19.9 5.4 21 99-119 24-44 (73)
No 1
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.9e-66 Score=496.47 Aligned_cols=316 Identities=56% Similarity=0.887 Sum_probs=290.1
Q ss_pred CCCcCCCCCCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 045866 43 APCGFSDSKTSSKDAEERSASMLKLLIVVVLCIIFMGVEVVGGMKANSLAVLTDAAHLLSDVAAFAISLFSIWASGWEAT 122 (406)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~r~l~i~~~~~~~~~~~e~v~g~~s~S~aLlaDa~h~l~D~~s~~i~l~a~~~s~~~~~ 122 (406)
.+|++++..+.+...+ ++.++|+|+++.++|+.||+.|+++|+++||+|+++||.|+++|+.+++++|+++|+++||++
T Consensus 52 ~~c~~~~~~~~~~~~~-~~~~~r~L~~~~~l~l~fm~~E~vGg~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~ 130 (379)
T KOG1482|consen 52 HHCHRHPDSCDSSDAK-RRAAERKLSIAAALCLVFMIGEVVGGYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPAT 130 (379)
T ss_pred cccccCCCCCccchhh-hhhhhhhHHHHHHHHHHHHHHHHhCCeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCC
Confidence 6888877666555444 444789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHhccc-cCCCCCCCC
Q 045866 123 PRQSYGFFRIEILGALVSIQLIWLLAGILVYEAIVRLIHENGQVQGFLMFVVSAIGLAVNIAMAFFLGHD-HGHGHNHGH 201 (406)
Q Consensus 123 ~~~pyG~~R~E~l~~l~~~~~l~~~~~~i~~eai~~li~~~~~~~~~~~~~v~~~~l~vn~~~~~~~~~~-~~h~~~~~h 201 (406)
+|.+|||.|+|+++++++.+++|++.+.++++|++|+++++.++++.+|++++.+|+++|++|.+++.+. |+|+|+++|
T Consensus 131 ~r~sfG~~R~Evlgal~Sv~~IW~~tgvLV~~Ai~Rl~s~~~ev~g~~m~i~a~~gv~vNiim~~vL~~~~h~h~H~~~~ 210 (379)
T KOG1482|consen 131 KRMSFGFHRAEVLGALVSVLLIWVVTGVLVYEAIQRLLSGDYEVNGGIMLITAAVGVAVNIIMGFVLHQSGHGHSHGGSH 210 (379)
T ss_pred CceecceehHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCceeecceEEEEEeehhhhhhhhhhhhhcccCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876 444443333
Q ss_pred CCCCCCCCCCCCCcCCCCCCCCCCCCCCCCccCCcccccccccCCCCCCCcccccccCchhhHHHHHHHHHHHHHHHHHH
Q 045866 202 DHSHGHDAKHHQHHHGGDFKHRDEHLHSHETDRTEPLLSTCSEEHKPKDGPKQKKQRNINVQGAYLHVLGDSIQSVGVMI 281 (406)
Q Consensus 202 ~~~h~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli 281 (406)
.|+|+|.+. . ..|.|++|+|.|+++|.++|+||++
T Consensus 211 s~g~~h~~~------------------------------------------~---~~n~nvraAyiHVlGDliQSvGV~i 245 (379)
T KOG1482|consen 211 SHGHSHDHG------------------------------------------E---ELNLNVRAAFVHVLGDLIQSVGVLI 245 (379)
T ss_pred CcCcccccc------------------------------------------c---ccchHHHHHHHHHHHHHHHHHHHHh
Confidence 333322211 0 1399999999999999999999999
Q ss_pred HHHHHHhcCCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHccCCCcccHHHHHHHHhcCcCccccceEEEEEeeCCeE
Q 045866 282 GGAIIWYKPEWKIIDLICTLAFSAIVLGTTFRMLRNILEILMESTPREVDATRLEKGLCEMEEVVAIHELHIWAITVGKV 361 (406)
Q Consensus 282 ~~~l~~~~~~~~~~D~i~sliis~~il~~~~~l~r~~~~~Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~l~~w~~~~g~~ 361 (406)
++.++||+|+|+++||+||+++|++++.++++++|+.+.+||+.+|++.+.+.+++.+.+++||++||+||+|.++.||.
T Consensus 246 aa~Ii~f~P~~~i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P~~~d~~~~~~~l~~iegV~~VHdLhIWsiTv~k~ 325 (379)
T KOG1482|consen 246 AALIIYFKPEYKIADPICTFVFSIIVLGTTITILRDILGILMEGTPRNLDFDKVKKGLLSIEGVKAVHDLHIWSITVGKV 325 (379)
T ss_pred hheeEEecccceecCchhhhhHHHHHHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHhhhcceeEEEEEEEEEEecCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEEeccCCC
Q 045866 362 LLACHVKIKPEADADMVLENVIDYIKREYNISHVTIQIERECR 404 (406)
Q Consensus 362 ~~~v~V~v~~~~~~~~i~~~v~~~l~~~~~i~~vtIqie~~~~ 404 (406)
.+++||.++++++++++++++.++|+++|++.++|||+||...
T Consensus 326 ~ls~Hv~i~~~ad~~~vL~~~~~~i~~~~~~~~vTiQie~~~~ 368 (379)
T KOG1482|consen 326 ALSVHLAIDSEADAEEVLDEARSLIKRRYGISHVTIQIEPYTE 368 (379)
T ss_pred EEEEEEeecCCCCHHHHHHHHHHHHHhhcceEEEEEEecCCcc
Confidence 9999999999999999999999999999999999999999764
No 2
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-57 Score=436.57 Aligned_cols=276 Identities=37% Similarity=0.657 Sum_probs=262.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHH
Q 045866 63 SMLKLLIVVVLCIIFMGVEVVGGMKANSLAVLTDAAHLLSDVAAFAISLFSIWASGWEATPRQSYGFFRIEILGALVSIQ 142 (406)
Q Consensus 63 ~~r~l~i~~~~~~~~~~~e~v~g~~s~S~aLlaDa~h~l~D~~s~~i~l~a~~~s~~~~~~~~pyG~~R~E~l~~l~~~~ 142 (406)
..|++++++.+|++||++|+++|+++||+||+|||.|+++|+++.++++++.++++|+++++|||||.|+|++++|++++
T Consensus 20 ~~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav 99 (296)
T COG1230 20 NERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNAL 99 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCC
Q 045866 143 LIWLLAGILVYEAIVRLIHENGQVQGFLMFVVSAIGLAVNIAMAFFLGHDHGHGHNHGHDHSHGHDAKHHQHHHGGDFKH 222 (406)
Q Consensus 143 ~l~~~~~~i~~eai~~li~~~~~~~~~~~~~v~~~~l~vn~~~~~~~~~~~~h~~~~~h~~~h~~g~~~~~~~~~~~~~~ 222 (406)
+|+.++++++|||++|+++|+ +++...|++++++|+++|+++++.+.+
T Consensus 100 ~Li~~s~~I~~EAi~R~~~P~-~i~~~~ml~va~~GL~vN~~~a~ll~~------------------------------- 147 (296)
T COG1230 100 LLIVVSLLILWEAIQRLLAPP-PIHYSGMLVVAIIGLVVNLVSALLLHK------------------------------- 147 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCCC-CCCccchHHHHHHHHHHHHHHHHHhhC-------------------------------
Confidence 999999999999999999986 556699999999999999999999964
Q ss_pred CCCCCCCCCccCCcccccccccCCCCCCCcccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHH
Q 045866 223 RDEHLHSHETDRTEPLLSTCSEEHKPKDGPKQKKQRNINVQGAYLHVLGDSIQSVGVMIGGAIIWYKPEWKIIDLICTLA 302 (406)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~l~~~~~~~~~~D~i~sli 302 (406)
. +.+|.|++++|+|+++|+++|+++++++++++++ +|+|+||+++++
T Consensus 148 -------------------------------~-~~~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~~-~w~~~Dpi~si~ 194 (296)
T COG1230 148 -------------------------------G-HEENLNMRGAYLHVLGDALGSVGVIIAAIVIRFT-GWSWLDPILSIV 194 (296)
T ss_pred -------------------------------C-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCccchHHHHH
Confidence 1 2368999999999999999999999999999987 999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHccCCCcccHHHHHHHHhcCcCccccceEEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHH
Q 045866 303 FSAIVLGTTFRMLRNILEILMESTPREVDATRLEKGLCEMEEVVAIHELHIWAITVGKVLLACHVKIKPEADADMVLENV 382 (406)
Q Consensus 303 is~~il~~~~~l~r~~~~~Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~l~~w~~~~g~~~~~v~V~v~~~~~~~~i~~~v 382 (406)
++++++..+++++|++..+|++..|+.++.+++++.+.+.|||.+||++|+|+++++...+++|+++++..+.+.+++++
T Consensus 195 i~~lil~~a~~l~k~s~~iLle~~P~~id~~~~~~~l~~~~~v~~vhdlHvWsi~~~~~~~t~Hv~v~~~~~~~~~~~~~ 274 (296)
T COG1230 195 IALLILSSAWPLLKESLNILLEGVPEGIDIDKVREALLRIPGVASVHDLHVWSITGGEHALTLHVVVDEVADADAALDQI 274 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHhcCCCccceeecccCCCCCCceeEEEEEEecCccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999767777799999
Q ss_pred HHHHHHhCCCceEEEEeccCC
Q 045866 383 IDYIKREYNISHVTIQIEREC 403 (406)
Q Consensus 383 ~~~l~~~~~i~~vtIqie~~~ 403 (406)
++++.++|+|+|+|||+|+..
T Consensus 275 ~~~l~~~~~I~hvTiQ~e~~~ 295 (296)
T COG1230 275 VRRLLEKYGIEHVTIQLETEG 295 (296)
T ss_pred HHHHhhhcCcceEEEEecCCC
Confidence 999999999999999999864
No 3
>PRK03557 zinc transporter ZitB; Provisional
Probab=100.00 E-value=6.1e-53 Score=414.68 Aligned_cols=275 Identities=35% Similarity=0.590 Sum_probs=255.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHH
Q 045866 64 MLKLLIVVVLCIIFMGVEVVGGMKANSLAVLTDAAHLLSDVAAFAISLFSIWASGWEATPRQSYGFFRIEILGALVSIQL 143 (406)
Q Consensus 64 ~r~l~i~~~~~~~~~~~e~v~g~~s~S~aLlaDa~h~l~D~~s~~i~l~a~~~s~~~~~~~~pyG~~R~E~l~~l~~~~~ 143 (406)
.|++++++++|++++++|+++|+++||+||++||+|+++|+++.+++++++++++||+|++|||||+|+|++++++++++
T Consensus 18 ~r~~~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~~~ 97 (312)
T PRK03557 18 ARRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIA 97 (312)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCC
Q 045866 144 IWLLAGILVYEAIVRLIHENGQVQGFLMFVVSAIGLAVNIAMAFFLGHDHGHGHNHGHDHSHGHDAKHHQHHHGGDFKHR 223 (406)
Q Consensus 144 l~~~~~~i~~eai~~li~~~~~~~~~~~~~v~~~~l~vn~~~~~~~~~~~~h~~~~~h~~~h~~g~~~~~~~~~~~~~~~ 223 (406)
|+++++++++||+.++++|.+ .+..++++++++++++|+++++++++
T Consensus 98 l~~~~~~i~~eai~~l~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~-------------------------------- 144 (312)
T PRK03557 98 LVVITILIVWEAIERFRTPRP-VAGGMMMAIAVAGLLANILSFWLLHH-------------------------------- 144 (312)
T ss_pred HHHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHHHHHHHHHHHHhc--------------------------------
Confidence 999999999999999998753 44567788889999999998887753
Q ss_pred CCCCCCCCccCCcccccccccCCCCCCCcccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHH
Q 045866 224 DEHLHSHETDRTEPLLSTCSEEHKPKDGPKQKKQRNINVQGAYLHVLGDSIQSVGVMIGGAIIWYKPEWKIIDLICTLAF 303 (406)
Q Consensus 224 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~l~~~~~~~~~~D~i~slii 303 (406)
.++.+|.+++++++|++.|+++|+++++++++++++ +|+|+||++++++
T Consensus 145 ------------------------------~~~~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~~~-g~~~~Dpi~~ili 193 (312)
T PRK03557 145 ------------------------------GSEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIWT-GWTPADPILSILV 193 (312)
T ss_pred ------------------------------ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcchhHHHHHHH
Confidence 344577789999999999999999999999887764 8999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHccCCCcccHHHHHHHH-hcCcCccccceEEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHH
Q 045866 304 SAIVLGTTFRMLRNILEILMESTPREVDATRLEKGL-CEMEEVVAIHELHIWAITVGKVLLACHVKIKPEADADMVLENV 382 (406)
Q Consensus 304 s~~il~~~~~l~r~~~~~Ll~~~p~~~~~~~i~~~l-~~~~~V~~v~~l~~w~~~~g~~~~~v~V~v~~~~~~~~i~~~v 382 (406)
++++++++++++|+++..|||.+|++++.+++++.+ ++.|||.+||++|+|+. ++++++++||.++++.+.+++.+++
T Consensus 194 s~~i~~~~~~l~~~~~~~Lld~~p~~~~~~~i~~~i~~~~~gV~~vh~l~~~~~-G~~~~v~~hv~v~~~~~~~~i~~~i 272 (312)
T PRK03557 194 SVLVLRSAWRLLKESVNELLEGAPVSLDIAELKRRLCREIPEVRNVHHVHVWMV-GEKPVMTLHVQVIPPHDHDALLDRI 272 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHhcCCCceeEEEEEEEEe-CCeEEEEEEEEECCCCCHHHHHHHH
Confidence 999999999999999999999999999999998876 57999999999999997 5788999999999998999999999
Q ss_pred HHHHHHhCCCceEEEEeccCC
Q 045866 383 IDYIKREYNISHVTIQIEREC 403 (406)
Q Consensus 383 ~~~l~~~~~i~~vtIqie~~~ 403 (406)
+++++++|++.++|||+||++
T Consensus 273 ~~~l~~~~~i~~vtIh~e~~~ 293 (312)
T PRK03557 273 QDYLMHHYQIEHATIQMEYQP 293 (312)
T ss_pred HHHHHHhCCCCEEEEEeccCc
Confidence 999999999999999999875
No 4
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.8e-50 Score=389.29 Aligned_cols=283 Identities=24% Similarity=0.362 Sum_probs=269.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHH
Q 045866 58 EERSASMLKLLIVVVLCIIFMGVEVVGGMKANSLAVLTDAAHLLSDVAAFAISLFSIWASGWEATPRQSYGFFRIEILGA 137 (406)
Q Consensus 58 ~~~~~~~r~l~i~~~~~~~~~~~e~v~g~~s~S~aLlaDa~h~l~D~~s~~i~l~a~~~s~~~~~~~~pyG~~R~E~l~~ 137 (406)
++++..+|..+++++.|++++++|+++|+++||.||+|||+|+++|+++.++.++++++++||||.+|||||+|+|++++
T Consensus 6 ~~~~~~~~~~~~sl~~nl~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~k~E~l~s 85 (304)
T COG0053 6 ERLKLVRRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAETLAS 85 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHH
Confidence 45566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCCcCC
Q 045866 138 LVSIQLIWLLAGILVYEAIVRLIHENGQVQGFLMFVVSAIGLAVNIAMAFFLGHDHGHGHNHGHDHSHGHDAKHHQHHHG 217 (406)
Q Consensus 138 l~~~~~l~~~~~~i~~eai~~li~~~~~~~~~~~~~v~~~~l~vn~~~~~~~~~~~~h~~~~~h~~~h~~g~~~~~~~~~ 217 (406)
++.+++++++++.++++++.+++.+.+..++.++++++++++++|.+++++.++
T Consensus 86 l~~~~~i~~~g~~i~~~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~-------------------------- 139 (304)
T COG0053 86 LIVSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRR-------------------------- 139 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH--------------------------
Confidence 999999999999999999999999888888999999999999999999999875
Q ss_pred CCCCCCCCCCCCCCccCCcccccccccCCCCCCCcccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhH
Q 045866 218 GDFKHRDEHLHSHETDRTEPLLSTCSEEHKPKDGPKQKKQRNINVQGAYLHVLGDSIQSVGVMIGGAIIWYKPEWKIIDL 297 (406)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~l~~~~~~~~~~D~ 297 (406)
..++.+|..+.++.+|.+.|+++|+++++|.+..++ +|+|+||
T Consensus 140 -----------------------------------~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~~~~~--g~~~lD~ 182 (304)
T COG0053 140 -----------------------------------VGKKTNSQALIADALHHRSDVLTSLAVLVGLLGSLL--GWPWLDP 182 (304)
T ss_pred -----------------------------------HHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHh--CcHHHHH
Confidence 688999999999999999999999999999984443 8999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHccCCCcccHHHHHHHHhcCcCccccceEEEEEeeCCeEEEEEEEEeCCC---CC
Q 045866 298 ICTLAFSAIVLGTTFRMLRNILEILMESTPREVDATRLEKGLCEMEEVVAIHELHIWAITVGKVLLACHVKIKPE---AD 374 (406)
Q Consensus 298 i~sliis~~il~~~~~l~r~~~~~Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~l~~w~~~~g~~~~~v~V~v~~~---~~ 374 (406)
+++++++++|++++++++|+++..|||+.+++++.+++++.+.+.|||.++|+++.+. .++++++++|++++|+ .+
T Consensus 183 i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~~~~~~~~i~~~i~~~~~V~~v~~lr~R~-~G~~~~id~~i~v~~~ls~~e 261 (304)
T COG0053 183 LAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIILSVPGVKGVHDLRTRK-SGSRIFIDVHIEVDPDLSLEE 261 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHhcCCcceeeecceeee-eCCeEEEEEEEEECCCCChHH
Confidence 9999999999999999999999999999999999999999999999999999999995 6889999999999999 48
Q ss_pred HHHHHHHHHHHHHHhCC-CceEEEEeccCCC
Q 045866 375 ADMVLENVIDYIKREYN-ISHVTIQIERECR 404 (406)
Q Consensus 375 ~~~i~~~v~~~l~~~~~-i~~vtIqie~~~~ 404 (406)
+|++.++++++++++++ +.+++||+||...
T Consensus 262 ah~I~~~ie~~i~~~~~~~~~v~IhveP~~~ 292 (304)
T COG0053 262 AHEIADEVEKRIKKEFPKVADVTIHVEPLGE 292 (304)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEecCCcc
Confidence 99999999999999998 9999999999764
No 5
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=100.00 E-value=1.3e-49 Score=389.31 Aligned_cols=278 Identities=17% Similarity=0.234 Sum_probs=258.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHH
Q 045866 62 ASMLKLLIVVVLCIIFMGVEVVGGMKANSLAVLTDAAHLLSDVAAFAISLFSIWASGWEATPRQSYGFFRIEILGALVSI 141 (406)
Q Consensus 62 ~~~r~l~i~~~~~~~~~~~e~v~g~~s~S~aLlaDa~h~l~D~~s~~i~l~a~~~s~~~~~~~~pyG~~R~E~l~~l~~~ 141 (406)
...|.+++++++|++++++|+++|+++||+||++||+|+++|+++.++++++.++++||+|++|||||+|+|++++++++
T Consensus 8 ~~~~~~~~~~~~n~~l~i~k~~~g~~sgS~allaDa~hsl~D~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~ 87 (299)
T PRK09509 8 LVSRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQS 87 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHHH
Confidence 34488999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCCcCCCCCC
Q 045866 142 QLIWLLAGILVYEAIVRLIHENGQVQGFLMFVVSAIGLAVNIAMAFFLGHDHGHGHNHGHDHSHGHDAKHHQHHHGGDFK 221 (406)
Q Consensus 142 ~~l~~~~~~i~~eai~~li~~~~~~~~~~~~~v~~~~l~vn~~~~~~~~~~~~h~~~~~h~~~h~~g~~~~~~~~~~~~~ 221 (406)
+++++.++++++||++++++|.+..++.++++++++++++|.+++++.++
T Consensus 88 ~~l~~~~~~~~~esi~~l~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~------------------------------ 137 (299)
T PRK09509 88 MFISGSALFLFLTGIQHLISPTPMNDPGVGIIVTLVALICTLILVTFQRW------------------------------ 137 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH------------------------------
Confidence 99999999999999999999876666777788999999999998887764
Q ss_pred CCCCCCCCCCccCCcccccccccCCCCCCCcccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHH
Q 045866 222 HRDEHLHSHETDRTEPLLSTCSEEHKPKDGPKQKKQRNINVQGAYLHVLGDSIQSVGVMIGGAIIWYKPEWKIIDLICTL 301 (406)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~l~~~~~~~~~~D~i~sl 301 (406)
..++.+|.+++++++|++.|+++|++++++.++.++ +|+|+||++++
T Consensus 138 -------------------------------~~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~~--g~~~~D~i~ai 184 (299)
T PRK09509 138 -------------------------------VVRKTQSQAVRADMLHYQSDVMMNGAILLALGLSWY--GWHRADALFAL 184 (299)
T ss_pred -------------------------------HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ChHHHHHHHHH
Confidence 356678999999999999999999999988777665 89999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHccCCCcccHHHHHHHHhcCcCccccceEEEEEeeCCeEEEEEEEEeCCCC---CHHHH
Q 045866 302 AFSAIVLGTTFRMLRNILEILMESTPREVDATRLEKGLCEMEEVVAIHELHIWAITVGKVLLACHVKIKPEA---DADMV 378 (406)
Q Consensus 302 iis~~il~~~~~l~r~~~~~Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~l~~w~~~~g~~~~~v~V~v~~~~---~~~~i 378 (406)
++++++++.+++++|++...|||.+|++++.+++++.+.++|||.+++++|+|+. +.++.+++||.++++. ++|++
T Consensus 185 ii~~~il~~~~~i~~~~~~~Ll~~~~~~~~~~~I~~~i~~~~~v~~v~~l~~~~~-G~~~~v~v~i~v~~~~~~~e~h~i 263 (299)
T PRK09509 185 GIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQS-GPTRFIQLHLEMEDNLPLVQAHMI 263 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCcCceeeeeEee-CCeEEEEEEEEECCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999985 5677899999999884 78999
Q ss_pred HHHHHHHHHHhCCCceEEEEeccCC
Q 045866 379 LENVIDYIKREYNISHVTIQIEREC 403 (406)
Q Consensus 379 ~~~v~~~l~~~~~i~~vtIqie~~~ 403 (406)
.++++++++++++..+++||+||..
T Consensus 264 ~~~ie~~l~~~~~~~~v~ihveP~~ 288 (299)
T PRK09509 264 ADQVEQALLRRFPGSDVIIHQDPCS 288 (299)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 9999999999998778999999944
No 6
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-48 Score=371.18 Aligned_cols=309 Identities=29% Similarity=0.507 Sum_probs=260.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHH
Q 045866 64 MLKLLIVVVLCIIFMGVEVVGGMKANSLAVLTDAAHLLSDVAAFAISLFSIWASGWEATPRQSYGFFRIEILGALVSIQL 143 (406)
Q Consensus 64 ~r~l~i~~~~~~~~~~~e~v~g~~s~S~aLlaDa~h~l~D~~s~~i~l~a~~~s~~~~~~~~pyG~~R~E~l~~l~~~~~ 143 (406)
.|+++..+.+|+.||.+|++.|+.+||+.|++|++|+++|+.+..++|++.++++||+++.|||||.|+|.+++|+++++
T Consensus 34 sr~if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vf 113 (354)
T KOG1484|consen 34 SRSIFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVF 113 (354)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCC---CCCCCCcCCCCC
Q 045866 144 IWLLAGILVYEAIVRLIHENGQVQGFLMFVVSAIGLAVNIAMAFFLGHDHGHGHNHGHDHSHGHD---AKHHQHHHGGDF 220 (406)
Q Consensus 144 l~~~~~~i~~eai~~li~~~~~~~~~~~~~v~~~~l~vn~~~~~~~~~~~~h~~~~~h~~~h~~g---~~~~~~~~~~~~ 220 (406)
+.+.+++++.|+++|+++| +++.+...++++..|+++|++..+.+.+.|+|.||-.|++.|+.. .....++.++.+
T Consensus 114 lvl~a~fi~~Es~eRl~~p-pei~t~rllvVS~~gllvnLvGi~aF~h~~~h~hg~~~~s~~~~h~~~~~~~~~~~~~~~ 192 (354)
T KOG1484|consen 114 LVLIAFFIFSESVERLFDP-PEIHTNRLLVVSVLGLLVNLVGILAFSHGHAHSHGSHHHSSHSGHLALLFHSLLGVWDLH 192 (354)
T ss_pred HHHHHHHHhHHHHHHhcCc-hhcCCceeEEeeHHHHHHHHHHHHHhccccccccCCCCccccccchhccccccccccccc
Confidence 9999999999999999987 578888889999999999999999987654444432222222111 111111112222
Q ss_pred CCCCCCCCCCCccCCcccccccccCCCCCCCcccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHH
Q 045866 221 KHRDEHLHSHETDRTEPLLSTCSEEHKPKDGPKQKKQRNINVQGAYLHVLGDSIQSVGVMIGGAIIWYKPEWKIIDLICT 300 (406)
Q Consensus 221 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~l~~~~~~~~~~D~i~s 300 (406)
++.+.+.++ ..+.++.+.++|+++|+++|++++++..++.++ +|.++||+|+
T Consensus 193 ~~~~~~i~g---------------------------~~~~~m~gifLHVLaDtlgSvGviist~Li~~~-gw~~aDpics 244 (354)
T KOG1484|consen 193 HHAHGHIHG---------------------------HSHENMPGIFLHVLADTLGSVGVIISTLLIKLF-GWMIADPICS 244 (354)
T ss_pred cccccccCC---------------------------cccccccchhHHHHHHHhcchHHHHHHHHHHhc-CccchhHHHH
Confidence 333333322 123445589999999999999999999998876 9999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHccCCCcccHHHHHHH---HhcCcCccccceEEEEEeeCCeEEEEEEEEeCCCCCHHH
Q 045866 301 LAFSAIVLGTTFRMLRNILEILMESTPREVDATRLEKG---LCEMEEVVAIHELHIWAITVGKVLLACHVKIKPEADADM 377 (406)
Q Consensus 301 liis~~il~~~~~l~r~~~~~Ll~~~p~~~~~~~i~~~---l~~~~~V~~v~~l~~w~~~~g~~~~~v~V~v~~~~~~~~ 377 (406)
++||++|+.+.+|++|++..+|||++||+... .+.+. +.+.+||.++.+.|+|+++.|.+..++|++|.+++|.+.
T Consensus 245 llIailIf~sv~PL~k~s~~iLLq~tPp~~~~-~l~~cl~~Is~~~gV~~v~~~hFWt~~~g~~vGtlhl~V~~dade~~ 323 (354)
T KOG1484|consen 245 LLIAILIFLSVLPLLKYSGKILLQRTPPHLEN-SLKQCLRQISTLDGVTSVQNPHFWTLESGSVVGTLHLQVSSDADEQS 323 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChhhhh-HHHHHHHHhhccccceeeccCceeeccCCceEEEEEEEEecCcchhH
Confidence 99999999999999999999999999998653 22323 445899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCceEEEEeccCC
Q 045866 378 VLENVIDYIKREYNISHVTIQIEREC 403 (406)
Q Consensus 378 i~~~v~~~l~~~~~i~~vtIqie~~~ 403 (406)
++.++.++++ ..+|.+.|||+|.+.
T Consensus 324 vl~~V~~~~~-~~gV~~ltvQv~~~~ 348 (354)
T KOG1484|consen 324 VLAHVTRKLE-DAGVKDLTVQVEKEN 348 (354)
T ss_pred HHHHHHHHHH-hcceeEEEEEEeccc
Confidence 9999999885 668999999999864
No 7
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-49 Score=383.63 Aligned_cols=333 Identities=31% Similarity=0.537 Sum_probs=269.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHH
Q 045866 65 LKLLIVVVLCIIFMGVEVVGGMKANSLAVLTDAAHLLSDVAAFAISLFSIWASGWEATPRQSYGFFRIEILGALVSIQLI 144 (406)
Q Consensus 65 r~l~i~~~~~~~~~~~e~v~g~~s~S~aLlaDa~h~l~D~~s~~i~l~a~~~s~~~~~~~~pyG~~R~E~l~~l~~~~~l 144 (406)
.++...+++.++|++.|++.|..+||+||++|++||+.|+++..+++++.+.+++.++.++||||.|.|++|+|++++|+
T Consensus 9 ~rli~~l~ltiiFfvLEli~gyv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl 88 (404)
T KOG1483|consen 9 LRLISVLVLTIIFFVLELITGYVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIFL 88 (404)
T ss_pred cceeehHHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHHH
Confidence 67888899999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCC-CCCCCC--CCC--CCCCCCcC-CC
Q 045866 145 WLLAGILVYEAIVRLIHENGQVQGFLMFVVSAIGLAVNIAMAFFLGHDHGHGHNH-GHDHSH--GHD--AKHHQHHH-GG 218 (406)
Q Consensus 145 ~~~~~~i~~eai~~li~~~~~~~~~~~~~v~~~~l~vn~~~~~~~~~~~~h~~~~-~h~~~h--~~g--~~~~~~~~-~~ 218 (406)
..+++.+..||++|++++....++..++.++++|++.|.+..+.+ ++|||.|+| .|+|.| ..| .+...|.+ +.
T Consensus 89 ~alc~~I~~EA~~R~I~p~~i~~P~~vL~vgi~gLi~Nvlg~~lf-hdhg~~h~~~~H~h~hg~~~~~~~~~~~~~~~~~ 167 (404)
T KOG1483|consen 89 TALCVSILIEAIERIIEPHHIENPILVLYVGIIGLISNVLGLFLF-HDHGHDHGHGVHGHSHGGMKGFIGLNLTHLHSHA 167 (404)
T ss_pred HHHHHHHHHHHHHhhcCCccccCceeeehhhHHHHHHHHHHhhee-eccCcccCCcCCCCCCCccccchhhhccCCchhc
Confidence 999999999999999999888899999999999999999987655 455544433 233333 122 11111111 00
Q ss_pred -CC----CCCCC-CCCCC---------Cc-c-CCcccccccccCCCCCC----CcccccccCchhhHHHHHHHHHHHHHH
Q 045866 219 -DF----KHRDE-HLHSH---------ET-D-RTEPLLSTCSEEHKPKD----GPKQKKQRNINVQGAYLHVLGDSIQSV 277 (406)
Q Consensus 219 -~~----~~~~~-~~~~~---------~~-~-~~~~l~~~~~~~~~~~~----~~~~~~~~s~~l~a~~~h~~~D~l~sv 277 (406)
+. ...+. .+... .+ + -+.|.+.+ .+.++. ...+++.++.|+++.++|+++|+++++
T Consensus 168 ~G~~t~~~~~d~~~~~~p~~~l~~~~~~N~~~~s~pv~~~---~S~~r~~~~~~~~e~~~~~lnmhGv~LhvL~Dalg~I 244 (404)
T KOG1483|consen 168 IGCNTLAKQLDTPLGPGPNAHLSGVMSQNLDGSSTPVQNH---GSLSRDDAREKTEEKLDRNLNMHGVFLHVLGDALGSI 244 (404)
T ss_pred cCCcchhhccccCCCCcchhhhccccccCCCCCCCccccC---Ccccccchhhhhhhhhhccccccceeeeeecccccce
Confidence 00 00000 00000 00 0 00011100 111111 112356689999999999999999999
Q ss_pred HHHHHHHHHHhcCCch---hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHccCCCcccHHHHHHHHhcCcCccccceEEEE
Q 045866 278 GVMIGGAIIWYKPEWK---IIDLICTLAFSAIVLGTTFRMLRNILEILMESTPREVDATRLEKGLCEMEEVVAIHELHIW 354 (406)
Q Consensus 278 ~vli~~~l~~~~~~~~---~~D~i~sliis~~il~~~~~l~r~~~~~Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~l~~w 354 (406)
+|+++++++|++ +|. |+||+.++++.++|+++++|++|++..+|+|.+|..++.+++++.+..+|||.+||++|+|
T Consensus 245 ~Vi~~A~~v~~t-~~~~~~y~DP~lsi~~~~ii~~sa~pl~k~s~liLLq~~P~~i~ld~v~~~l~~~~gv~~vh~lhvW 323 (404)
T KOG1483|consen 245 IVIVSALFVYKT-EYSWAYYLDPILSIVLTVIILFSAYPLLKESALILLQTTPGSIDLDIVEKDLLTVPGVISVHDLHVW 323 (404)
T ss_pred EEEEEEEEEEec-ceehhhhcCchHHHHHHHHHHHhhhHHHHHHHHHHHHhCCCcccHHHHHHHHhcCcceeeeeeeeee
Confidence 999999999986 664 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEEeccCC
Q 045866 355 AITVGKVLLACHVKIKPEADADMVLENVIDYIKREYNISHVTIQIEREC 403 (406)
Q Consensus 355 ~~~~g~~~~~v~V~v~~~~~~~~i~~~v~~~l~~~~~i~~vtIqie~~~ 403 (406)
++++.++..++||++....+.-++++++++++. .+||..+|||+|+++
T Consensus 324 qL~~~r~IAt~Hi~~~~p~~~~~~a~~ir~~fh-~~GIhs~TiqPeF~~ 371 (404)
T KOG1483|consen 324 QLAGSRIIATIHIQIQNPKEYMKIAEKIRSYFH-DQGIHSTTIQPEFAP 371 (404)
T ss_pred eeccceEEEEEEEEecCcHHHHHHHHHHHHHHH-hcCCcceeeccchhh
Confidence 999999999999999888777799999999985 789999999999865
No 8
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=100.00 E-value=1.3e-46 Score=362.01 Aligned_cols=263 Identities=37% Similarity=0.619 Sum_probs=246.3
Q ss_pred HHHHHHHHHhhhCcHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045866 77 FMGVEVVGGMKANSLAVLTDAAHLLSDVAAFAISLFSIWASGWEATPRQSYGFFRIEILGALVSIQLIWLLAGILVYEAI 156 (406)
Q Consensus 77 ~~~~e~v~g~~s~S~aLlaDa~h~l~D~~s~~i~l~a~~~s~~~~~~~~pyG~~R~E~l~~l~~~~~l~~~~~~i~~eai 156 (406)
++++|+++|+++||.||++||+|++.|+++.+++++++++++||+|++|||||+|+|+++++++++++++.+++++++|+
T Consensus 2 l~~~k~~~g~~~~S~allada~~s~~D~~~~~~~l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si 81 (268)
T TIGR01297 2 LMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEAI 81 (268)
T ss_pred EEEeehHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCccCCc
Q 045866 157 VRLIHENGQVQGFLMFVVSAIGLAVNIAMAFFLGHDHGHGHNHGHDHSHGHDAKHHQHHHGGDFKHRDEHLHSHETDRTE 236 (406)
Q Consensus 157 ~~li~~~~~~~~~~~~~v~~~~l~vn~~~~~~~~~~~~h~~~~~h~~~h~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (406)
.++++++++.+..++++++++++++|.++++++++
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------------------------------- 116 (268)
T TIGR01297 82 ERLINPEPEIDGGTMLIVAIVGLIVNLILALYLHR--------------------------------------------- 116 (268)
T ss_pred HHHhCCCCcccchhHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Confidence 99998876677788888999999999999988875
Q ss_pred ccccccccCCCCCCCcccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHhHHHHHH
Q 045866 237 PLLSTCSEEHKPKDGPKQKKQRNINVQGAYLHVLGDSIQSVGVMIGGAIIWYKPEWKIIDLICTLAFSAIVLGTTFRMLR 316 (406)
Q Consensus 237 ~l~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~l~~~~~~~~~~D~i~sliis~~il~~~~~l~r 316 (406)
..++.+|++++++++|++.|+++|++++++..+.++. |+|+||++++++++++++.+++++|
T Consensus 117 ----------------~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~~~--~~~~D~l~~i~i~~~i~~~~~~l~~ 178 (268)
T TIGR01297 117 ----------------VGHRLGSLALRAAALHVLSDALSSVGVLIGALLIYFG--WHWADPIAALLISLLILYTAFRLLK 178 (268)
T ss_pred ----------------hCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 2466789999999999999999999999999988873 8999999999999999999999999
Q ss_pred HHHHHHHccCCCcccHHHHHHHHhcCcCccccceEEEEEeeCCeEEEEEEEEeCCCC---CHHHHHHHHHHHHHHh-CCC
Q 045866 317 NILEILMESTPREVDATRLEKGLCEMEEVVAIHELHIWAITVGKVLLACHVKIKPEA---DADMVLENVIDYIKRE-YNI 392 (406)
Q Consensus 317 ~~~~~Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~l~~w~~~~g~~~~~v~V~v~~~~---~~~~i~~~v~~~l~~~-~~i 392 (406)
++...|++.+|+++..+++++.+.+.|||.+++++|+|+.+++++.+++||+++++. ++|++.++++++++++ +++
T Consensus 179 ~~~~~Ll~~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~~~~~ah~i~~~i~~~i~~~~~~v 258 (268)
T TIGR01297 179 ESINVLLDAAPDEEDLEEIKKAILSIPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLDLKQAHDIALEIEREILKRHPGI 258 (268)
T ss_pred HHHHHHhCCCCCcccHHHHHHHHhcCCCcccceEeEEEEcCCCCEEEEEEEEECCCCChhHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999866699999999999994 6789999999999877 589
Q ss_pred ceEEEEeccC
Q 045866 393 SHVTIQIERE 402 (406)
Q Consensus 393 ~~vtIqie~~ 402 (406)
.++|||+||+
T Consensus 259 ~~v~ih~ep~ 268 (268)
T TIGR01297 259 EHVTIQVEPC 268 (268)
T ss_pred CeEEEEeCCC
Confidence 9999999994
No 9
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=100.00 E-value=2.8e-45 Score=355.39 Aligned_cols=279 Identities=25% Similarity=0.480 Sum_probs=243.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCcHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 045866 67 LLIVVVLCIIFMGVEVVGGMKANSLAVLTDAAHLLSDVAAFAISLFSIWASGWEATPRQSYGFFRIEILGALVSIQLIWL 146 (406)
Q Consensus 67 l~i~~~~~~~~~~~e~v~g~~s~S~aLlaDa~h~l~D~~s~~i~l~a~~~s~~~~~~~~pyG~~R~E~l~~l~~~~~l~~ 146 (406)
|+++++++++++++|+++|+++||.++++|++|++.|+++.++++++.+.+++|++++|||||+|+|++++++.++++++
T Consensus 1 L~i~~~~~~~~~~~~~~~~~~t~S~al~~d~~~sl~d~~~~~~~l~~~~~~~~~~~~~~pfG~~r~e~l~~~~~~~~l~~ 80 (284)
T PF01545_consen 1 LIISLILNLILAVVKIIAGIITGSLALLADGLHSLADAISLLISLFALRIASKPPDKRYPFGYGRLEPLAALIVSILLIF 80 (284)
T ss_dssp -HHHHHHHCCTHHCTTCSS-SSSSS---SCCCHHHHHHHHHHHHHHHHHHHTSS-SSSSSSSSTTHHHHHHHHHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhhhHhhhhhhhhHhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCC
Q 045866 147 LAGILVYEAIVRLIHENGQVQGFLMFVVSAIGLAVNIAMAFFLGHDHGHGHNHGHDHSHGHDAKHHQHHHGGDFKHRDEH 226 (406)
Q Consensus 147 ~~~~i~~eai~~li~~~~~~~~~~~~~v~~~~l~vn~~~~~~~~~~~~h~~~~~h~~~h~~g~~~~~~~~~~~~~~~~~~ 226 (406)
++++++++++++++++.+...+.+++.++++++++|.++++++++..
T Consensus 81 ~~~~~~~~si~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~--------------------------------- 127 (284)
T PF01545_consen 81 LGLFLIVESIQRLISPHEPSPPGIVLIVALVSIIVNLLLAWYLRRVG--------------------------------- 127 (284)
T ss_dssp HHHHHHHHHTTTSSSSSSSSTTTS-THHHHHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred hHHHHHHHHhhcccccccchhhhhhhhhhhhhhhHHHHHHHHHhhcc---------------------------------
Confidence 99999999999999986666666666679999999999999987510
Q ss_pred CCCCCccCCcccccccccCCCCCCCcccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh-hhHHHHHHHHH
Q 045866 227 LHSHETDRTEPLLSTCSEEHKPKDGPKQKKQRNINVQGAYLHVLGDSIQSVGVMIGGAIIWYKPEWKI-IDLICTLAFSA 305 (406)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~l~~~~~~~~~-~D~i~sliis~ 305 (406)
++.+.+++++++.++|.+.|.+.|++++++.++.++. +|.| +||++++++++
T Consensus 128 --------------------------~~~~~~s~~l~~~~~~~~~d~~~s~~v~i~~~~~~~~-~~~~~~D~v~~l~i~~ 180 (284)
T PF01545_consen 128 --------------------------KRLQRRSPALRADALHSLIDVLSSLAVLISLLLAYLG-PWFWYADPVASLLIAL 180 (284)
T ss_dssp --------------------------HHS---SHHHHHHHHHHHHHTS-SSTS-SSSTSSSTT--STS-SSHHHHHHHHH
T ss_pred --------------------------cccccccccchhhhhhcccchhHHHHHHHHHHHHHHH-hcccccchhhhhHHHH
Confidence 1123459999999999999999999999999888875 4554 99999999999
Q ss_pred HHHHhHHHHHHHHHHHHHccCCCcccHHHHHHHHhcCcCccccceEEEEEeeCCeEEEEEEEEeCCCC---CHHHHHHHH
Q 045866 306 IVLGTTFRMLRNILEILMESTPREVDATRLEKGLCEMEEVVAIHELHIWAITVGKVLLACHVKIKPEA---DADMVLENV 382 (406)
Q Consensus 306 ~il~~~~~l~r~~~~~Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~l~~w~~~~g~~~~~v~V~v~~~~---~~~~i~~~v 382 (406)
++++.+++++|++...||+++|+++..+++++.+++.|+|.+++++|+|+.+.+++.+++++.++++. +++++.+++
T Consensus 181 ~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i 260 (284)
T PF01545_consen 181 FILYSGYPLIKESIRILLDASPDPELVEKIRRIIESVPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERI 260 (284)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHTSS-SEEEEEEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHH
T ss_pred HHhhhhhhchhhhhcccccccccccchhHHHHhhccCCceEeccceEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999866699999999999995 788999999
Q ss_pred HHHHHHhC-CCceEEEEeccCCCC
Q 045866 383 IDYIKREY-NISHVTIQIERECRK 405 (406)
Q Consensus 383 ~~~l~~~~-~i~~vtIqie~~~~~ 405 (406)
++.+++++ ++.++|||+||+.++
T Consensus 261 ~~~l~~~~~~i~~v~I~~~p~~~~ 284 (284)
T PF01545_consen 261 EKRLREKFPGIYDVTIHIEPDEEK 284 (284)
T ss_dssp HHHHHHHSTTCEEEEEEEEECGG-
T ss_pred HHHHHHhCCCcEEEEEEEEecCCC
Confidence 99999998 799999999998753
No 10
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-39 Score=319.69 Aligned_cols=279 Identities=14% Similarity=0.152 Sum_probs=240.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH
Q 045866 60 RSASMLKLLIVVVLCIIFMGVEVVGGMKANSLAVLTDAAHLLSDVAAFAISLFSIWASGWEATPRQSYGFFRIEILGALV 139 (406)
Q Consensus 60 ~~~~~r~l~i~~~~~~~~~~~e~v~g~~s~S~aLlaDa~h~l~D~~s~~i~l~a~~~s~~~~~~~~pyG~~R~E~l~~l~ 139 (406)
.++..|..|+++++|++++++|+++|+.+||+|++||++|+++|+++.++.|+++++++++++.+|||||+|+|++|.++
T Consensus 110 ~~~~~~~~~i~l~~Nigl~vaK~~as~~sgS~aIiAsavdSl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~r~EtvG~i~ 189 (412)
T KOG1485|consen 110 KNAERRAAWIGLAANIGLAVAKVVASYLSGSMAIIASAVDSLSDLVSGFVLLFSLRAAKKKPTYEYPRGRGRVETVGLIA 189 (412)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhCCCCCCcccchhHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc-------cc----chhHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCC
Q 045866 140 SIQLIWLLAGILVYEAIVRLIHENG-------QV----QGFLMFVVSAIGLAVNIAMAFFLGHDHGHGHNHGHDHSHGHD 208 (406)
Q Consensus 140 ~~~~l~~~~~~i~~eai~~li~~~~-------~~----~~~~~~~v~~~~l~vn~~~~~~~~~~~~h~~~~~h~~~h~~g 208 (406)
++.+|.++++.++++++.++..|.. +. +..++.+++++...+++...++++
T Consensus 190 ~S~iMa~agv~ii~sSl~~i~~~~~~~~~~~~~q~~~~~a~~~i~i~is~~~vk~~l~~~c~------------------ 251 (412)
T KOG1485|consen 190 VSVIMAMAGVQIIWSSLRLIVGPHAIGHHHNPSQLIFINALWLIAIMISAKEVKLRLTLYCA------------------ 251 (412)
T ss_pred HHHHHHHHHHHHHHHhHHhhhcccccccccCchhhcccchhhhheehhhHHHHHHHHHHHHH------------------
Confidence 9999999999999999999886211 11 122555566666666666666664
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCCccCCcccccccccCCCCCCCcccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045866 209 AKHHQHHHGGDFKHRDEHLHSHETDRTEPLLSTCSEEHKPKDGPKQKKQRNINVQGAYLHVLGDSIQSVGVMIGGAIIWY 288 (406)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~l~~~ 288 (406)
+++.|..++++++|++.|++++.++++++.+.++
T Consensus 252 ----------------------------------------------~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~~ 285 (412)
T KOG1485|consen 252 ----------------------------------------------IKTNSNIVRANAWDHRNDVLTNSVALVAASLAYY 285 (412)
T ss_pred ----------------------------------------------HhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999999999999999888
Q ss_pred cCCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHccCCCcccHHHHHHHH-hcCcCccccceEEEEEeeCCeEEEEEEE
Q 045866 289 KPEWKIIDLICTLAFSAIVLGTTFRMLRNILEILMESTPREVDATRLEKGL-CEMEEVVAIHELHIWAITVGKVLLACHV 367 (406)
Q Consensus 289 ~~~~~~~D~i~sliis~~il~~~~~l~r~~~~~Ll~~~p~~~~~~~i~~~l-~~~~~V~~v~~l~~w~~~~g~~~~~v~V 367 (406)
+ |+|+||++++++|.+++++|.+...+++..|.|++.+.+..+++.... ..-+.++.++.++.+.+ +..+++++++
T Consensus 286 ~--~~~lDP~gailVS~~ii~t~~~t~~~~i~~Lvg~~a~pe~L~~~~~~~l~~~~~i~~idtv~~y~~-g~~~~Vev~i 362 (412)
T KOG1485|consen 286 Y--NYWLDPIGAILVSTYIIYTGGRTGLENIKELVGRSAPPEYLEIITYLILQHGKLIKHIDTVRAYTF-GSHYFVEVHI 362 (412)
T ss_pred h--hhcccchhhhhhheehhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCccccceeeeeecc-cceEEEEEee
Confidence 5 789999999999999999999999999999999855444455555444 44458999999999986 5689999999
Q ss_pred EeCCCC---CHHHHHHHHHHHHHHhCCCceEEEEeccCCCC
Q 045866 368 KIKPEA---DADMVLENVIDYIKREYNISHVTIQIERECRK 405 (406)
Q Consensus 368 ~v~~~~---~~~~i~~~v~~~l~~~~~i~~vtIqie~~~~~ 405 (406)
.++++. .+|++.+.+++.|+....+.+++|+++.++.+
T Consensus 363 vl~~~~~l~~ah~i~E~lq~~ie~l~ever~fvh~d~e~~h 403 (412)
T KOG1485|consen 363 VLDEDLSLSVAHDIGETLQKKIELLPEVERAFVHIDYEFLH 403 (412)
T ss_pred ecCCCCccHHHHHHHHHHHHHHhhcchheeeeeecCccccC
Confidence 999994 78999999999998877899999999998764
No 11
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.7e-26 Score=210.44 Aligned_cols=281 Identities=17% Similarity=0.217 Sum_probs=241.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCchhHHHHHHHHHH
Q 045866 62 ASMLKLLIVVVLCIIFMGVEVVGGMKANSLAVLTDAAHLLSDVAAFAISLFSIWASG-WEATPRQSYGFFRIEILGALVS 140 (406)
Q Consensus 62 ~~~r~l~i~~~~~~~~~~~e~v~g~~s~S~aLlaDa~h~l~D~~s~~i~l~a~~~s~-~~~~~~~pyG~~R~E~l~~l~~ 140 (406)
.+++.|.++++..++|+.+.++.|+.+||.+++-||+.++.|+....++|...++-. .|.+.|||||++.+|++.-.++
T Consensus 17 ~eq~~L~~Si~~tvi~A~~GIi~GL~~gS~~IiFDGvYSl~da~mtllsL~vsrli~~~p~~~RF~~GfwhlEplvL~in 96 (314)
T COG3965 17 NEQLYLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFWHLEPLVLAIN 96 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcceEEEeccHHHHHHHHHHHHHHHHHHHhccCCCccccCcchhhhhhhHhhhc
Confidence 345789999999999999999999999999999999999999999999998888776 5566699999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCCcCCCCC
Q 045866 141 IQLIWLLAGILVYEAIVRLIHENGQVQGFLMFVVSAIGLAVNIAMAFFLGHDHGHGHNHGHDHSHGHDAKHHQHHHGGDF 220 (406)
Q Consensus 141 ~~~l~~~~~~i~~eai~~li~~~~~~~~~~~~~v~~~~l~vn~~~~~~~~~~~~h~~~~~h~~~h~~g~~~~~~~~~~~~ 220 (406)
+.+|++++.+-++.|+..++++..+..+..+.++++++...+..+++..++
T Consensus 97 g~ll~ll~lyAlinAl~~l~dGGR~v~~~~ai~yt~~s~~~Ca~~~~~~~r----------------------------- 147 (314)
T COG3965 97 GTLLALLCLYALINALGSLLDGGREVEPGHAIAYTLVSVTGCAAIAWKLRR----------------------------- 147 (314)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHh-----------------------------
Confidence 999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCCCCCCCccCCcccccccccCCCCCCCcccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC--c----hh
Q 045866 221 KHRDEHLHSHETDRTEPLLSTCSEEHKPKDGPKQKKQRNINVQGAYLHVLGDSIQSVGVMIGGAIIWYKPE--W----KI 294 (406)
Q Consensus 221 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~l~~~~~~--~----~~ 294 (406)
..|+.+|+.+.++...++-|+..|.+++++.++.|...+ | +|
T Consensus 148 --------------------------------~nrr~~s~lIald~kqW~Mst~lS~al~VaF~~a~~l~~T~~a~l~~Y 195 (314)
T COG3965 148 --------------------------------LNRRLKSPLIALDTKQWLMSTCLSAALFVAFAAAWLLAGTKFAHLVVY 195 (314)
T ss_pred --------------------------------hhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcc
Confidence 467889999999999999999999999999999887422 2 47
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHccCCCcccHHHHHHHHhcCcCccccceEEEEEeeCC-eEEEEEEEEeCCCC
Q 045866 295 IDLICTLAFSAIVLGTTFRMLRNILEILMESTPREVDATRLEKGLCEMEEVVAIHELHIWAITVG-KVLLACHVKIKPEA 373 (406)
Q Consensus 295 ~D~i~sliis~~il~~~~~l~r~~~~~Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~l~~w~~~~g-~~~~~v~V~v~~~~ 373 (406)
+||+.-.+++++++...+++++.++++.++.+|++ ..+.++....+..+-.+..+.+.+....| ..++++|+.+|++.
T Consensus 196 ~DPmvlaL~~~v~IplPlg~vk~al~eiLlmtP~e-l~q~ies~~~~~v~k~~f~~~~~yvArVGr~l~IEi~fiip~~~ 274 (314)
T COG3965 196 ADPMVLALVCLVFIPLPLGTVKSALREILLMTPNE-LQQSIESHAHEIVEKYGFPSYHVYVARVGRGLFIEIHFIIPRES 274 (314)
T ss_pred cCHHHHHHHHHheeeccHHHHHHHHHHHHhcCcHH-HHHHHHHHHHHHHHHhcCchHHHHHHHhccceEEEEEEEeCCcc
Confidence 99999999999999999999999999999999984 55666665555444444555555533344 48999999998873
Q ss_pred ------CHHHHHHHHHHHHHHhCCCceEEEEeccCCC
Q 045866 374 ------DADMVLENVIDYIKREYNISHVTIQIERECR 404 (406)
Q Consensus 374 ------~~~~i~~~v~~~l~~~~~i~~vtIqie~~~~ 404 (406)
+-|+|.+++.+.+..+-.-..+||.+.++++
T Consensus 275 ~ar~Ved~d~Irdei~~slg~~g~~rwltvsfT~D~k 311 (314)
T COG3965 275 DARNVEDWDDIRDEIGQSLGSLGYERWLTVSFTRDEK 311 (314)
T ss_pred CCccchhHHHHHHHHHHHhhcCCcCceEEEEEecccc
Confidence 5678888888888765546788998887654
No 12
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=99.75 E-value=1.7e-17 Score=159.86 Aligned_cols=225 Identities=16% Similarity=0.161 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHH
Q 045866 65 LKLLIVVVLCIIFMGVEVVGGMKANSLAVLTDAAHLLSDVAAFAISLFSIWASGWEATPRQSYGFFRIEILGALVSIQLI 144 (406)
Q Consensus 65 r~l~i~~~~~~~~~~~e~v~g~~s~S~aLlaDa~h~l~D~~s~~i~l~a~~~s~~~~~~~~pyG~~R~E~l~~l~~~~~l 144 (406)
|...+++++|++-+.+|+.+++++||-+|+|+++|+++|..++++.+++++.+.+.||+-|||||.+..++.+|++++-|
T Consensus 207 rvVatAi~iN~l~~~~Kfg~w~~tgShsmfAEaIHS~aD~~NQ~lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLISgvGI 286 (503)
T KOG2802|consen 207 RVVATAICINGLNCFFKFGAWIYTGSHSMFAEAIHSLADTCNQLLLALGISKSVQTPDPLHPYGYSNMRYVSSLISGVGI 286 (503)
T ss_pred ceehhHHHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccchhHHHHHHhccce
Confidence 55778999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HHHHH-HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCC
Q 045866 145 WLLAG-ILVYEAIVRLIHENGQVQGFLMFVVSAIGLAVNIAMAFFLGHDHGHGHNHGHDHSHGHDAKHHQHHHGGDFKHR 223 (406)
Q Consensus 145 ~~~~~-~i~~eai~~li~~~~~~~~~~~~~v~~~~l~vn~~~~~~~~~~~~h~~~~~h~~~h~~g~~~~~~~~~~~~~~~ 223 (406)
+.++. .-+|..|..|++|+|..+..++..+..-+++......+...+.---+ .-..|++.
T Consensus 287 fc~G~GlSiyhGv~gLlhpePi~~l~~ay~il~gSl~~eGasllvAi~evkr~-------Ak~~gmSi------------ 347 (503)
T KOG2802|consen 287 FCMGCGLSIYHGVMGLLHPEPIESLLWAYCILAGSLVSEGASLLVAINEVKRN-------AKAKGMSI------------ 347 (503)
T ss_pred eeecccchhhhccccccCCCCCcchHHHHHHHhhHHHhcchHHHHHHHHHHHH-------HHHcCCCH------------
Confidence 65554 45899999999999888877777776666665554443332100000 00000000
Q ss_pred CCCCCCCCccCCcccccccccCCCCCCCcccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHh--cCCchhhhHHHHH
Q 045866 224 DEHLHSHETDRTEPLLSTCSEEHKPKDGPKQKKQRNINVQGAYLHVLGDSIQSVGVMIGGAIIWY--KPEWKIIDLICTL 301 (406)
Q Consensus 224 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~l~~~--~~~~~~~D~i~sl 301 (406)
+.--.+.++|..... .+-|...-.|++|++..+.+ ..+.|+.|++++|
T Consensus 348 ---------------------------~dYV~~~~DPs~nvV---l~EDtAAVtGv~IAaa~m~lss~tgnPIyD~~GSi 397 (503)
T KOG2802|consen 348 ---------------------------YDYVMESRDPSTNVV---LLEDTAAVTGVIIAAACMGLSSITGNPIYDSLGSI 397 (503)
T ss_pred ---------------------------HHHHhhcCCCcceEE---EecchHHHHHHHHHHHHHHHHHhcCCCCccccchH
Confidence 000111222222111 24566666666666554333 2489999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHccCCCcccHHHHHHHHhcCcCccccceEEEEEeeCCeEEEEEEEEeCCC
Q 045866 302 AFSAIVLGTTFRMLRNILEILMESTPREVDATRLEKGLCEMEEVVAIHELHIWAITVGKVLLACHVKIKPE 372 (406)
Q Consensus 302 iis~~il~~~~~l~r~~~~~Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~l~~w~~~~g~~~~~v~V~v~~~ 372 (406)
+++.++--. +.++++++.-.++.|++....+|.+++.
T Consensus 398 vvGaLLGmV----------------------------------e~diyDvK~~diG~g~vRfKAE~DFdGr 434 (503)
T KOG2802|consen 398 VVGALLGMV----------------------------------ENDIYDVKATDIGLGKVRFKAEVDFDGR 434 (503)
T ss_pred HHHHHHHHH----------------------------------HHhhhhccceeeccceeEEEEEeccCch
Confidence 888764332 1124555555668888888888988876
No 13
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=98.17 E-value=1.7e-05 Score=77.99 Aligned_cols=92 Identities=25% Similarity=0.214 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHH
Q 045866 63 SMLKLLIVVVLCIIFMGVEVVGGMKANSLAVLTDAAHLLSDVAAFAISLFSIWASGWEATPRQSYGFFRIEILGALVSIQ 142 (406)
Q Consensus 63 ~~r~l~i~~~~~~~~~~~e~v~g~~s~S~aLlaDa~h~l~D~~s~~i~l~a~~~s~~~~~~~~pyG~~R~E~l~~l~~~~ 142 (406)
......++++++..+..++.-.|-.+||.+|.||+.|..+|+++.+..++++- +.+ +||..++++++++.++
T Consensus 119 ~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~-~~~-------~g~~~lD~i~a~~I~~ 190 (304)
T COG0053 119 ALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLL-GSL-------LGWPWLDPLAALLISL 190 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHH-HHH-------hCcHHHHHHHHHHHHH
Confidence 34567778889999999999999999999999999999999999999999997 433 7899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 045866 143 LIWLLAGILVYEAIVRLIHE 162 (406)
Q Consensus 143 ~l~~~~~~i~~eai~~li~~ 162 (406)
+++..++.+++|++..|++.
T Consensus 191 ~Il~~~~~~~~~s~~~L~d~ 210 (304)
T COG0053 191 YILKTGFRLFKESVNELMDA 210 (304)
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999973
No 14
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=97.98 E-value=7.2e-05 Score=71.87 Aligned_cols=92 Identities=23% Similarity=0.211 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHH
Q 045866 65 LKLLIVVVLCIIFMGVEVVGGMKANSLAVLTDAAHLLSDVAAFAISLFSIWASGWEATPRQSYGFFRIEILGALVSIQLI 144 (406)
Q Consensus 65 r~l~i~~~~~~~~~~~e~v~g~~s~S~aLlaDa~h~l~D~~s~~i~l~a~~~s~~~~~~~~pyG~~R~E~l~~l~~~~~l 144 (406)
....+++++|+++...+.-.|...+|.++.+|+.|.+.|+++.+..+++...+. ||+.++|++++++.++++
T Consensus 98 ~~~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~--------~~~~~~D~l~~i~i~~~i 169 (268)
T TIGR01297 98 IVAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIY--------FGWHWADPIAALLISLLI 169 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHH
Confidence 456678888888888888889999999999999999999999999999988774 668899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 045866 145 WLLAGILVYEAIVRLIHENG 164 (406)
Q Consensus 145 ~~~~~~i~~eai~~li~~~~ 164 (406)
+..++.++++++..|++..+
T Consensus 170 ~~~~~~l~~~~~~~Ll~~~~ 189 (268)
T TIGR01297 170 LYTAFRLLKESINVLLDAAP 189 (268)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999997654
No 15
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=97.90 E-value=0.00013 Score=71.59 Aligned_cols=91 Identities=27% Similarity=0.249 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHH
Q 045866 65 LKLLIVVVLCIIFMGVEVVGGMKANSLAVLTDAAHLLSDVAAFAISLFSIWASGWEATPRQSYGFFRIEILGALVSIQLI 144 (406)
Q Consensus 65 r~l~i~~~~~~~~~~~e~v~g~~s~S~aLlaDa~h~l~D~~s~~i~l~a~~~s~~~~~~~~pyG~~R~E~l~~l~~~~~l 144 (406)
....+++++|.++...+...+-..+|.++.+|+.|...|+++.+..++++..+. +||..++++++++.++++
T Consensus 119 ~~~~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~--------~g~~~~D~i~aiii~~~i 190 (299)
T PRK09509 119 IVTLVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMNGAILLALGLSW--------YGWHRADALFALGIGIYI 190 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hChHHHHHHHHHHHHHHH
Confidence 345567777877777777778889999999999999999999999888887763 578899999999999999
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 045866 145 WLLAGILVYEAIVRLIHEN 163 (406)
Q Consensus 145 ~~~~~~i~~eai~~li~~~ 163 (406)
+..++.++++++..|++..
T Consensus 191 l~~~~~i~~~~~~~Ll~~~ 209 (299)
T PRK09509 191 LYSALRMGYEAVQSLLDRA 209 (299)
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 9999999999999999753
No 16
>PRK03557 zinc transporter ZitB; Provisional
Probab=97.16 E-value=0.0036 Score=61.84 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=61.9
Q ss_pred HhhhCcHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 045866 85 GMKANSLAVLTDAAHLLSDVAAFAISLFSIWASGWEATPRQSYGFFRIEILGALVSIQLIWLLAGILVYEAIVRLIHENG 164 (406)
Q Consensus 85 g~~s~S~aLlaDa~h~l~D~~s~~i~l~a~~~s~~~~~~~~pyG~~R~E~l~~l~~~~~l~~~~~~i~~eai~~li~~~~ 164 (406)
+...+|.++.+|+.|.+.|+++.+..+++..+..+ +||.-++++++++.+++++..++.++++++..|++..+
T Consensus 145 ~~~~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~~-------~g~~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Lld~~p 217 (312)
T PRK03557 145 GSEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIW-------TGWTPADPILSILVSVLVLRSAWRLLKESVNELLEGAP 217 (312)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 44578999999999999999999988888765532 34445999999999999999999999999999997544
No 17
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=95.68 E-value=0.033 Score=56.23 Aligned_cols=90 Identities=19% Similarity=0.192 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHH
Q 045866 65 LKLLIVVVLCIIFMGVEVVGGMKANSLAVLTDAAHLLSDVAAFAISLFSIWASGWEATPRQSYGFFRIEILGALVSIQLI 144 (406)
Q Consensus 65 r~l~i~~~~~~~~~~~e~v~g~~s~S~aLlaDa~h~l~D~~s~~i~l~a~~~s~~~~~~~~pyG~~R~E~l~~l~~~~~l 144 (406)
+...+.+......+..-+..+.+.||-.+.|-|.|-.+|+++..++|++.+.+. |.+.-+.|+|+++++.++
T Consensus 231 ~~i~i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~--------~~~~~lDP~gailVS~~i 302 (412)
T KOG1485|consen 231 WLIAIMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAY--------YYNYWLDPIGAILVSTYI 302 (412)
T ss_pred hhheehhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------hhhhcccchhhhhhheeh
Confidence 344445555555566667778889999999999999999999999999999986 556788999999999999
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 045866 145 WLLAGILVYEAIVRLIHE 162 (406)
Q Consensus 145 ~~~~~~i~~eai~~li~~ 162 (406)
+..++.-..+++..|+..
T Consensus 303 i~t~~~t~~~~i~~Lvg~ 320 (412)
T KOG1485|consen 303 IYTGGRTGLENIKELVGR 320 (412)
T ss_pred hhhhhHHHHHHHHHHhCC
Confidence 999999999999999964
No 18
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=93.74 E-value=3.1 Score=40.51 Aligned_cols=28 Identities=18% Similarity=0.025 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045866 131 RIEILGALVSIQLIWLLAGILVYEAIVR 158 (406)
Q Consensus 131 R~E~l~~l~~~~~l~~~~~~i~~eai~~ 158 (406)
+.+.....+++++++++++++++...++
T Consensus 85 ~~~~~le~~S~~lii~lGl~ll~r~~r~ 112 (279)
T PRK10019 85 SAEPWLQLISAVIIISTAFWMFWRTWRG 112 (279)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777778888887777665
No 19
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=92.00 E-value=0.12 Score=49.82 Aligned_cols=90 Identities=21% Similarity=0.212 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhC--cHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhH-HHHHHHHHHHHH
Q 045866 67 LLIVVVLCIIFMGVEVVGGMKAN--SLAVLTDAAHLLSDVAAFAISLFSIWASGWEATPRQSYGFFR-IEILGALVSIQL 143 (406)
Q Consensus 67 l~i~~~~~~~~~~~e~v~g~~s~--S~aLlaDa~h~l~D~~s~~i~l~a~~~s~~~~~~~~pyG~~R-~E~l~~l~~~~~ 143 (406)
..+++++|.++.....-.+-..+ |.++.+++.|.+.|.+..+..+++....... ++.. ++++++++.+.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~i~~~~~~~~-------~~~~~~D~v~~l~i~~~ 181 (284)
T PF01545_consen 109 ALVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVLISLLLAYLG-------PWFWYADPVASLLIALF 181 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-SSSTSSSTT--------STS-SSHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHHHHHHHHHHH-------hcccccchhhhhHHHHH
Confidence 45666666666666655555566 9999999999999999998877776655422 2333 799999999999
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 045866 144 IWLLAGILVYEAIVRLIHEN 163 (406)
Q Consensus 144 l~~~~~~i~~eai~~li~~~ 163 (406)
++..+..++++++..|+...
T Consensus 182 i~~~~~~~~~~~~~~Ll~~~ 201 (284)
T PF01545_consen 182 ILYSGYPLIKESIRILLDAS 201 (284)
T ss_dssp HHHHHHHHHHHHHHHHTT-S
T ss_pred Hhhhhhhchhhhhccccccc
Confidence 99999999999999999764
No 20
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=90.73 E-value=3.3 Score=40.57 Aligned_cols=73 Identities=12% Similarity=0.262 Sum_probs=61.6
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHHHHHHHHHh------cCCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHccCCCc
Q 045866 257 QRNINVQGAYLHVLGDSIQSVGVMIGGAIIWY------KPEWKIIDLICTLAFSAIVLGTTFRMLRNILEILMESTPRE 329 (406)
Q Consensus 257 ~~s~~l~a~~~h~~~D~l~sv~vli~~~l~~~------~~~~~~~D~i~sliis~~il~~~~~l~r~~~~~Ll~~~p~~ 329 (406)
.+|..+.++++|.++|++.-..++++..+... ++||+-+..+++++-+++++..+.-++.|++..|..-.|-+
T Consensus 45 s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I~~EAi~R~~~P~~i~ 123 (296)
T COG1230 45 TGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLLAPPPIH 123 (296)
T ss_pred hccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 57889999999999999999998888776544 23667789999999999999999999999999998755543
No 21
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=89.79 E-value=3.2 Score=33.40 Aligned_cols=71 Identities=18% Similarity=0.268 Sum_probs=52.2
Q ss_pred ccHHHHHHHHhcCcCccccceEEEEEeeCCeEEEEEEEEeCCCC-----CHHHHHHHHHHHHHHhCCCceEEEEeccC
Q 045866 330 VDATRLEKGLCEMEEVVAIHELHIWAITVGKVLLACHVKIKPEA-----DADMVLENVIDYIKREYNISHVTIQIERE 402 (406)
Q Consensus 330 ~~~~~i~~~l~~~~~V~~v~~l~~w~~~~g~~~~~v~V~v~~~~-----~~~~i~~~v~~~l~~~~~i~~vtIqie~~ 402 (406)
..+.+|++.+.++|++..-..+.+.+ .++.=.+.+.|++.++. +.+.+.+++++.|+...++. +.|++-+.
T Consensus 4 vfP~~Ie~vl~~~~~~~~~y~i~v~~-~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~-~~V~lv~~ 79 (96)
T PF14535_consen 4 VFPSQIEEVLREFPEVSPEYQIVVTR-EGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVR-PEVELVPP 79 (96)
T ss_dssp E-HHHHHHHHCTSTTEEEEEEEEEEE-ETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS--EEEEEE-T
T ss_pred ECHHHHHHHHHhCcCCCCcEEEEEEc-CCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCce-EEEEEECC
Confidence 45688999999999997666666665 35666688889998874 35678889999999888886 56665543
No 22
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=89.65 E-value=21 Score=34.67 Aligned_cols=32 Identities=25% Similarity=0.074 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 045866 130 FRIEILGALVSIQLIWLLAGILVYEAIVRLIH 161 (406)
Q Consensus 130 ~R~E~l~~l~~~~~l~~~~~~i~~eai~~li~ 161 (406)
..+..+-+|..+++|....+-++-|+++.+-+
T Consensus 36 ~~l~~~~~fa~GvlL~~a~~hLLPea~~~~~~ 67 (317)
T PF02535_consen 36 RILSLLNAFAAGVLLGTAFLHLLPEAIEALES 67 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchhhccccc
Confidence 35667778888888877777788999887743
No 23
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=88.23 E-value=8.5 Score=37.43 Aligned_cols=70 Identities=24% Similarity=0.171 Sum_probs=44.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH----------------HHHHHHHHHHHHHHH
Q 045866 91 LAVLTDAAHLLSDVAAFAISLFSIWASGWEATPRQSYGFFRIEILGALV----------------SIQLIWLLAGILVYE 154 (406)
Q Consensus 91 ~aLlaDa~h~l~D~~s~~i~l~a~~~s~~~~~~~~pyG~~R~E~l~~l~----------------~~~~l~~~~~~i~~e 154 (406)
.-.++=.+|.+.+.++....+.....++|..-. +.+-+.=..|+|+++ .++++.+.++.++|=
T Consensus 202 ~~~~ai~~Hk~~e~~~~~~~l~~~~~~~~~~~~-~~~~~sl~~piG~~ig~~~~~~~~~~~~~~~~~~~~a~aaG~~lyv 280 (317)
T PF02535_consen 202 SLFIAIILHKIPEGFALGSILVKAGFSKRKALL-LLLLFSLSTPIGALIGIAISNSGSSSSSDIVSGILLAFAAGTFLYV 280 (317)
T ss_pred HHHHHHHHhHhHHHhhhhhhhhhhccccchhhH-HHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHH
Confidence 345667788888888887776655444443322 444455555555543 444577777888888
Q ss_pred HHHHhhc
Q 045866 155 AIVRLIH 161 (406)
Q Consensus 155 ai~~li~ 161 (406)
++..++.
T Consensus 281 ~~~ell~ 287 (317)
T PF02535_consen 281 AFVELLP 287 (317)
T ss_pred HHHHHHH
Confidence 8888863
No 24
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=87.17 E-value=3 Score=46.48 Aligned_cols=67 Identities=15% Similarity=0.204 Sum_probs=43.3
Q ss_pred HHHHHHHhcCcCccccceEEEEEee----CCeEEEEEEEEeCCC---C---CHHHHHHHHHHHHHHhCCCceEEEEe
Q 045866 333 TRLEKGLCEMEEVVAIHELHIWAIT----VGKVLLACHVKIKPE---A---DADMVLENVIDYIKREYNISHVTIQI 399 (406)
Q Consensus 333 ~~i~~~l~~~~~V~~v~~l~~w~~~----~g~~~~~v~V~v~~~---~---~~~~i~~~v~~~l~~~~~i~~vtIqi 399 (406)
+++++.++++|+|..|-.=--+.=+ .+--..+-.|+++|+ . +.+++.+++++.+++..|+....-|+
T Consensus 580 ~~~e~~ik~~PeV~~V~~k~GrAe~~tD~~~~n~~et~I~Lkp~~eW~~~~t~~~lie~l~~~~~~lpG~~~~~tqP 656 (1027)
T COG3696 580 QAIERAIKKFPEVERVFGKTGRAETATDPAPLNMIETFIELKPQEEWKDKKTRDELIEELRKTLEQLPGLANSFTQP 656 (1027)
T ss_pred HHHHHHHhcCcchheeeeccccCCCCCCCCCcccceeeEEecchhhCCCcccHHHHHHHHHHHHHhCCCcccccccc
Confidence 3567777788887766433222110 112457788888665 2 37889999999998777776665554
No 25
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=87.13 E-value=16 Score=33.30 Aligned_cols=48 Identities=17% Similarity=0.366 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhhccccccchh-HHHHHHHHHHHHHHHHHHHhcc
Q 045866 144 IWLLAGILVYEAIVRLIHENGQVQGF-LMFVVSAIGLAVNIAMAFFLGH 191 (406)
Q Consensus 144 l~~~~~~i~~eai~~li~~~~~~~~~-~~~~v~~~~l~vn~~~~~~~~~ 191 (406)
|+++++..+..++..++.....+.+. ..++.+++|-++..++++|.++
T Consensus 102 Ll~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr 150 (226)
T COG4858 102 LLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYR 150 (226)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44566667788888888766555444 3444577788888888888876
No 26
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=85.34 E-value=4.1 Score=36.50 Aligned_cols=69 Identities=14% Similarity=0.157 Sum_probs=52.3
Q ss_pred CcccHHHHHHHHhcCcCccccceEEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CceEEEEecc
Q 045866 328 REVDATRLEKGLCEMEEVVAIHELHIWAITVGKVLLACHVKIKPEADADMVLENVIDYIKREYN-ISHVTIQIER 401 (406)
Q Consensus 328 ~~~~~~~i~~~l~~~~~V~~v~~l~~w~~~~g~~~~~v~V~v~~~~~~~~i~~~v~~~l~~~~~-i~~vtIqie~ 401 (406)
+....+++.+.+.+++||.+..-+- ++..+++.+.+.-. .....++.++|++.+++.++ +.+|+|.-+|
T Consensus 73 ~~~~a~~i~~~v~~~~~V~~A~vvv----~~~~a~Vav~~~~~-~~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D~ 142 (177)
T PF09580_consen 73 RQQLADRIANRVKKVPGVEDATVVV----TDDNAYVAVDLDFN-RFNTKKIKKKVEKAVKSADPRIYNVYVSTDP 142 (177)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEE----ECCEEEEEEEeccc-ccchhHHHHHHHHHHHHhCCCccEEEEEcCH
Confidence 3445567888888888886666553 56788888888833 56888999999999998775 6899887665
No 27
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=77.46 E-value=20 Score=29.09 Aligned_cols=49 Identities=18% Similarity=0.324 Sum_probs=32.0
Q ss_pred EEEEEee-CCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHh----C--CCceEEEEec
Q 045866 351 LHIWAIT-VGKVLLACHVKIKPEADADMVLENVIDYIKRE----Y--NISHVTIQIE 400 (406)
Q Consensus 351 l~~w~~~-~g~~~~~v~V~v~~~~~~~~i~~~v~~~l~~~----~--~i~~vtIqie 400 (406)
+++.. . .+.+.+++++.+..+.+..++.+++|+++++. - ++..+.|.++
T Consensus 50 v~v~~-~~~~~i~v~l~v~v~~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V~ 105 (108)
T PF03780_consen 50 VKVEV-DEDGGITVDLHVVVEYGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHVE 105 (108)
T ss_pred eEEEE-ccCcceEEEEEEEEECCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEEE
Confidence 45443 3 56789999999999877666666666555542 2 3556666654
No 28
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=72.26 E-value=20 Score=26.85 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=31.6
Q ss_pred ccceEEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEE
Q 045866 347 AIHELHIWAITVGKVLLACHVKIKPEADADMVLENVIDYIKREYNISHVTI 397 (406)
Q Consensus 347 ~v~~l~~w~~~~g~~~~~v~V~v~~~~~~~~i~~~v~~~l~~~~~i~~vtI 397 (406)
+..-++--.+.++++.+.+.+-.+.....+.+.++++++++...++..|.|
T Consensus 22 ~~g~V~~i~i~~~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 22 ELGMVRDISIEGGKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp TTTSEEEEEECTCEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred HcCCeeEEEEECCEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 333344444567776666555444445778899999999985557887765
No 29
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=71.43 E-value=12 Score=37.15 Aligned_cols=60 Identities=18% Similarity=0.179 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 045866 98 AHLLSDVAAFAISLFSIWASGWEATPRQSYGFFRIEILGALVSIQLIWLLAGILVYEAIVRLIHENG 164 (406)
Q Consensus 98 ~h~l~D~~s~~i~l~a~~~s~~~~~~~~pyG~~R~E~l~~l~~~~~l~~~~~~i~~eai~~li~~~~ 164 (406)
+|-++|.+..+..+++.++-++ |||.-+||+++++.++++++...-++.++..-|+.-.|
T Consensus 212 LHVLaDtlgSvGviist~Li~~-------~gw~~aDpicsllIailIf~sv~PL~k~s~~iLLq~tP 271 (354)
T KOG1484|consen 212 LHVLADTLGSVGVIISTLLIKL-------FGWMIADPICSLLIAILIFLSVLPLLKYSGKILLQRTP 271 (354)
T ss_pred HHHHHHHhcchHHHHHHHHHHh-------cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3667777777777777777664 89999999999999999999998999999998886443
No 30
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=67.35 E-value=4.1 Score=39.24 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=18.8
Q ss_pred EEEeCCCCC-HHHHHHHHHHHHHHhCCCceEEEEeccC
Q 045866 366 HVKIKPEAD-ADMVLENVIDYIKREYNISHVTIQIERE 402 (406)
Q Consensus 366 ~V~v~~~~~-~~~i~~~v~~~l~~~~~i~~vtIqie~~ 402 (406)
++.|+|+.. --+.+.+|+..|+ +.+..=|+-++..+
T Consensus 233 ~fTVsPev~PGA~rl~~Ir~~l~-e~~a~CvFaEPQF~ 269 (318)
T COG4531 233 HFTVSPEVQPGAKRLAEIRTQLK-EQKATCVFAEPQFR 269 (318)
T ss_pred eEEeCcccCccHHHHHHHHHHHH-HhCCcEEecCCCCc
Confidence 556666631 2234566777775 44555455444433
No 31
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=67.08 E-value=54 Score=26.21 Aligned_cols=48 Identities=13% Similarity=0.119 Sum_probs=33.9
Q ss_pred eeC-CeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEEeccCC
Q 045866 356 ITV-GKVLLACHVKIKPEADADMVLENVIDYIKREYNISHVTIQIEREC 403 (406)
Q Consensus 356 ~~~-g~~~~~v~V~v~~~~~~~~i~~~v~~~l~~~~~i~~vtIqie~~~ 403 (406)
+.+ +.+.+.+.+-.+.....+.+.+++++.+....++..+.|++....
T Consensus 33 v~~~~~v~i~l~l~~p~~~~~~~l~~~i~~al~~l~gv~~v~v~i~~~~ 81 (99)
T TIGR02945 33 VDDDGHVDIQMTLTAPNCPVAGSMPGEVENAVRAVPGVGSVTVELVWDP 81 (99)
T ss_pred ECCCCeEEEEEEECCCCCChHHHHHHHHHHHHHhCCCCceEEEEEEeeC
Confidence 344 666666666556556677788889999976568888888876543
No 32
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=66.56 E-value=41 Score=34.15 Aligned_cols=72 Identities=13% Similarity=0.171 Sum_probs=59.1
Q ss_pred cccCchhhHHHHHHHHHHHHHHHHHHHHHHHHh------cCCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHccCC
Q 045866 256 KQRNINVQGAYLHVLGDSIQSVGVMIGGAIIWY------KPEWKIIDLICTLAFSAIVLGTTFRMLRNILEILMESTP 327 (406)
Q Consensus 256 ~~~s~~l~a~~~h~~~D~l~sv~vli~~~l~~~------~~~~~~~D~i~sliis~~il~~~~~l~r~~~~~Ll~~~p 327 (406)
..++..+.++..|++.|.+.=++++.+.=.... .+||.-.+.+++++-+++........++|+++..++-..
T Consensus 31 v~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl~alc~~I~~EA~~R~I~p~~ 108 (404)
T KOG1483|consen 31 VTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIFLTALCVSILIEAIERIIEPHH 108 (404)
T ss_pred ccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 356788999999999999988888776544322 357888999999999999999999999999999887443
No 33
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=66.48 E-value=74 Score=31.01 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=43.7
Q ss_pred HHHHhhhCcHHHHHhhHHHHHHHHHHHHHH-HHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045866 82 VVGGMKANSLAVLTDAAHLLSDVAAFAISL-FSIWASGWEATPRQSYGFFRIEILGALVSIQLIWLLAGILVYEAIVRLI 160 (406)
Q Consensus 82 ~v~g~~s~S~aLlaDa~h~l~D~~s~~i~l-~a~~~s~~~~~~~~pyG~~R~E~l~~l~~~~~l~~~~~~i~~eai~~li 160 (406)
-+.-+..|=...++-++-+..-+.+.++.. ...+...+ +++ ++.|.=....++++.+++.++++++|+.+..+.
T Consensus 204 ~lg~~~~Gi~~vlafslGtaltm~~vgll~~~~~r~~~~----~~~-~~~~~~~~~p~~s~~l~i~~G~~~~~~~~~~~~ 278 (279)
T PRK10019 204 QLKALTLGATLVLSFSIGLALTLVTVGVGAAISVQQAAK----RWS-GFNTLARRAPYFSSLLIGLVGVYMGVHGFMGIM 278 (279)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445566667777777766666655554 33332211 111 122333344477788888999999999988764
No 34
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=65.65 E-value=47 Score=30.03 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=34.0
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEEeccCCC
Q 045866 360 KVLLACHVKIKPEADADMVLENVIDYIKREYNISHVTIQIERECR 404 (406)
Q Consensus 360 ~~~~~v~V~v~~~~~~~~i~~~v~~~l~~~~~i~~vtIqie~~~~ 404 (406)
++.+.+.+-.+...-...+.+.++++++...++..+.|++..++.
T Consensus 114 ~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l~~dp~ 158 (174)
T TIGR03406 114 RVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVELVFDPP 158 (174)
T ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEEecCC
Confidence 666666666555566777889999999876789999988877653
No 35
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=63.68 E-value=24 Score=31.41 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=45.1
Q ss_pred cHHHHHHHHhcCcCccccceEEEEEeeCCeEEEEEEEEeCCC-CCHHHHHHHHHHHHHH-hCCCceEEEEeccC
Q 045866 331 DATRLEKGLCEMEEVVAIHELHIWAITVGKVLLACHVKIKPE-ADADMVLENVIDYIKR-EYNISHVTIQIERE 402 (406)
Q Consensus 331 ~~~~i~~~l~~~~~V~~v~~l~~w~~~~g~~~~~v~V~v~~~-~~~~~i~~~v~~~l~~-~~~i~~vtIqie~~ 402 (406)
..++|.+.+.++|+|.+..-+ - ++...++.+.+.=..+ ...+++..++.+.+++ ...+.+|+|.-+|+
T Consensus 55 ~A~~Ia~~v~~v~~V~dA~vv---V-tg~~A~Vgv~~~~~~~~~~~~~iK~~Va~~Vk~~dp~~~~VyVsaDpd 124 (158)
T TIGR02898 55 VADEIASEAAKVKGVKDATVV---I-TGNYAYVGVDLTNGLEGSVTDELKEKVAETVKSTDNRIANVYVSADPD 124 (158)
T ss_pred HHHHHHHHHhcCCCCceEEEE---E-ECCEEEEEEEcCCCcchhhHHHHHHHHHHHHHhhCCCcceEEEEcCHH
Confidence 345666667777777555544 2 4666666665443332 3567889999999988 44588999876653
No 36
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=60.70 E-value=68 Score=26.10 Aligned_cols=20 Identities=45% Similarity=0.650 Sum_probs=17.6
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 045866 128 GFFRIEILGALVSIQLIWLL 147 (406)
Q Consensus 128 G~~R~E~l~~l~~~~~l~~~ 147 (406)
||||+|++.+++.+.++|++
T Consensus 78 GYGr~E~~iG~iiA~l~~~l 97 (99)
T PF09877_consen 78 GYGRIETVIGLIIALLIYLL 97 (99)
T ss_pred CCCeehhhhhHHHHHHHHHH
Confidence 89999999999988888765
No 37
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=58.25 E-value=32 Score=27.22 Aligned_cols=47 Identities=19% Similarity=0.402 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhhHH---HHHHHHHHHHHhHHHHHH
Q 045866 268 HVLGDSIQSVGVMIGGAIIWYKPEWKIIDLI---CTLAFSAIVLGTTFRMLR 316 (406)
Q Consensus 268 h~~~D~l~sv~vli~~~l~~~~~~~~~~D~i---~sliis~~il~~~~~l~r 316 (406)
|-..|.+-|..-++.+.+.++. +|. +||+ +-++.+..++.-+++.+|
T Consensus 33 ~Rd~D~~fs~vgLl~g~IL~~~-gwR-ldp~ll~~Q~l~~~~~i~f~~e~ir 82 (84)
T PF07444_consen 33 SRDYDIFFSSVGLLYGLILWFQ-GWR-LDPILLFGQMLLVGLLIFFGWETIR 82 (84)
T ss_pred hhhhhHHHHHHHHHHHHHHHHH-hhc-ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777777777777666664 776 6999 666667777777776654
No 38
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=57.56 E-value=54 Score=28.72 Aligned_cols=46 Identities=9% Similarity=0.144 Sum_probs=33.1
Q ss_pred eCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEEeccCC
Q 045866 357 TVGKVLLACHVKIKPEADADMVLENVIDYIKREYNISHVTIQIEREC 403 (406)
Q Consensus 357 ~~g~~~~~v~V~v~~~~~~~~i~~~v~~~l~~~~~i~~vtIqie~~~ 403 (406)
.++++.+.+.+..+...-.+.+.+++++.|+.. |+..|.|++..++
T Consensus 23 ~gd~V~VtIt~Ty~gcpa~e~L~~~I~~aL~~~-Gv~~V~V~i~~~p 68 (146)
T TIGR02159 23 DGGGVVVKFTPTYSGCPALEVIRQDIRDAVRAL-GVEVVEVSTSLDP 68 (146)
T ss_pred ECCEEEEEEEeCCCCCchHHHHHHHHHHHHHhc-CCCeEEEeEeeCC
Confidence 456666666555555556778899999999764 8888888876554
No 39
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=54.82 E-value=52 Score=24.28 Aligned_cols=47 Identities=11% Similarity=0.098 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHhhccccccchhHHHHHHHHHHHHHHH
Q 045866 138 LVSIQLIWLLAGI---LVYEAIVRLIHENGQVQGFLMFVVSAIGLAVNIA 184 (406)
Q Consensus 138 l~~~~~l~~~~~~---i~~eai~~li~~~~~~~~~~~~~v~~~~l~vn~~ 184 (406)
++.++.|++.+.. -+-+.+.|.+.+.+..+..++++-++++.++-++
T Consensus 8 lv~GivLl~~G~~~~~S~~s~~s~~~TG~~t~~t~~~ligG~va~ivGl~ 57 (59)
T PF11381_consen 8 LVGGIVLLYFGYQASDSLGSQVSRAFTGSPTDKTIWYLIGGAVAVIVGLF 57 (59)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHhcCCCCchhHHHHHhHHHHHHHHHh
Confidence 3444455544444 2455577888888777778888777777776554
No 40
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=53.39 E-value=2.4e+02 Score=28.02 Aligned_cols=38 Identities=11% Similarity=0.104 Sum_probs=32.6
Q ss_pred CchhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHccCCC
Q 045866 291 EWKIIDLICTLAFSAIVLGTTFRMLRNILEILMESTPR 328 (406)
Q Consensus 291 ~~~~~D~i~sliis~~il~~~~~l~r~~~~~Ll~~~p~ 328 (406)
+.|++-++.++++++++.|.++.+.-.-.++++--.++
T Consensus 106 ~ip~~~~ii~vi~t~il~y~G~~~~~k~~de~~~l~~~ 143 (356)
T COG4956 106 PIPFISTIIPVILTIILAYFGFQLADKKRDEFLRLLNP 143 (356)
T ss_pred CccHHHhHHHHHHHHHHHHHhhHHhhhhhHHHHHhcch
Confidence 67899999999999999999999988888777765554
No 41
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=51.79 E-value=1.9e+02 Score=26.47 Aligned_cols=20 Identities=15% Similarity=0.066 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHhhhC
Q 045866 70 VVVLCIIFMGVEVVGGMKAN 89 (406)
Q Consensus 70 ~~~~~~~~~~~e~v~g~~s~ 89 (406)
++.+-.+|.++..+.++++.
T Consensus 86 ~L~~~~if~~~~gi~~~f~~ 105 (206)
T PF06570_consen 86 SLLFFGIFSLLFGIMGFFSP 105 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33333344444444444444
No 42
>KOG2877 consensus sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases [Lipid transport and metabolism]
Probab=50.87 E-value=1.7e+02 Score=29.80 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=26.7
Q ss_pred cccccccCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 045866 252 PKQKKQRNINVQGAYLHVLGDSIQSVGVMIGGAI 285 (406)
Q Consensus 252 ~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~l 285 (406)
+.+||.++..-.+...++=.|++.++.+.++...
T Consensus 106 kQARRTnsSsPLGELFDHG~DS~stvf~~l~~~s 139 (389)
T KOG2877|consen 106 KQARRTNSSSPLGELFDHGCDSISTVFVTLAVCS 139 (389)
T ss_pred hhhccCCCCCCcHhhhcccchhHHHHHHHHHHHH
Confidence 4577788888888889999999999877766544
No 43
>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease. Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=50.67 E-value=2.4e+02 Score=27.14 Aligned_cols=14 Identities=21% Similarity=-0.361 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 045866 136 GALVSIQLIWLLAG 149 (406)
Q Consensus 136 ~~l~~~~~l~~~~~ 149 (406)
.++..+....++++
T Consensus 43 ~~lg~s~~~~~~ai 56 (282)
T PF03824_consen 43 FGLGHSLTHGLSAI 56 (282)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444333333
No 44
>COG4035 Predicted membrane protein [Function unknown]
Probab=50.20 E-value=9.7 Score=30.51 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 045866 128 GFFRIEILGALVSIQLIWLLA 148 (406)
Q Consensus 128 G~~R~E~l~~l~~~~~l~~~~ 148 (406)
||+|+|++.+-+.++++|+.+
T Consensus 85 GYGR~Etv~Gt~LA~l~wL~~ 105 (108)
T COG4035 85 GYGRVETVVGTFLAVLLWLYF 105 (108)
T ss_pred CCceeehhHHHHHHHHHHHhh
Confidence 899999998877777777654
No 45
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=50.09 E-value=2.6e+02 Score=27.51 Aligned_cols=11 Identities=18% Similarity=0.015 Sum_probs=4.9
Q ss_pred HHHHHHHHHHc
Q 045866 314 MLRNILEILME 324 (406)
Q Consensus 314 l~r~~~~~Ll~ 324 (406)
..|+....+.+
T Consensus 259 ~ak~~a~~~~g 269 (303)
T COG2215 259 TAKNTAVRLSG 269 (303)
T ss_pred HHHHHHHHHhc
Confidence 34444444444
No 46
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=48.56 E-value=74 Score=29.49 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCcHH
Q 045866 66 KLLIVVVLCIIFMGVEVVGGMKANSLA 92 (406)
Q Consensus 66 ~l~i~~~~~~~~~~~e~v~g~~s~S~a 92 (406)
.-.+++.+.+++.++|+++-++..|..
T Consensus 7 pf~~al~~vl~lg~lE~i~l~~G~s~s 33 (202)
T PF07290_consen 7 PFSIALALVLLLGVLEIIGLLFGLSLS 33 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 345677788888999998877777754
No 47
>COG1279 Lysine efflux permease [General function prediction only]
Probab=45.86 E-value=1.1e+02 Score=28.40 Aligned_cols=76 Identities=20% Similarity=0.133 Sum_probs=52.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHH-HHHHHhcCCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHccCCCcccHHHHHH
Q 045866 259 NINVQGAYLHVLGDSIQSVGVMIG-GAIIWYKPEWKIIDLICTLAFSAIVLGTTFRMLRNILEILMESTPREVDATRLEK 337 (406)
Q Consensus 259 s~~l~a~~~h~~~D~l~sv~vli~-~~l~~~~~~~~~~D~i~sliis~~il~~~~~l~r~~~~~Ll~~~p~~~~~~~i~~ 337 (406)
+..+.....-.++|.+.-...+.| ++++. ..+|+.++..+.=++++++.++..+|++.+-..+..+.+....+..+
T Consensus 34 ~~~l~~~~~c~i~D~~Li~~gv~G~~~li~---~~p~l~~i~~~~G~~FLl~yg~~a~~~a~~~~~~~~~~~~~~~~~~~ 110 (202)
T COG1279 34 EYVLPIALLCAISDIVLISAGVFGVGALIA---KSPWLLLIVRWGGAAFLLYYGLLALKSAPRGPSQLQVAEFTKLKLKK 110 (202)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhccccccccccHHH
Confidence 667777788889997655544433 33333 47789999999999999999999999999843333333334444333
No 48
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=43.78 E-value=6e+02 Score=29.84 Aligned_cols=25 Identities=4% Similarity=0.186 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhCCCceEEEEeccC
Q 045866 377 MVLENVIDYIKREYNISHVTIQIERE 402 (406)
Q Consensus 377 ~i~~~v~~~l~~~~~i~~vtIqie~~ 402 (406)
..+++..+..+ .++-.-++.|+.++
T Consensus 299 ~~i~~F~~~a~-~~g~~p~fy~vse~ 323 (1094)
T PRK02983 299 QAIDAWLALAR-TYGWAPAVMGASEA 323 (1094)
T ss_pred HHHHHHHHHHH-HcCCEEEEEEECHH
Confidence 44555555543 46666677777543
No 49
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=43.47 E-value=75 Score=25.22 Aligned_cols=67 Identities=10% Similarity=0.254 Sum_probs=43.5
Q ss_pred CCcccHHHHHHHHhcC--cCccccceEEEEEee---CCeEEEEEEEEeCCC------CCHHHHHHHHHHHHHHhCCCc
Q 045866 327 PREVDATRLEKGLCEM--EEVVAIHELHIWAIT---VGKVLLACHVKIKPE------ADADMVLENVIDYIKREYNIS 393 (406)
Q Consensus 327 p~~~~~~~i~~~l~~~--~~V~~v~~l~~w~~~---~g~~~~~v~V~v~~~------~~~~~i~~~v~~~l~~~~~i~ 393 (406)
|++.....+.+.+++. +-+.+|.-+-+|+-. .|+.-+...+.+.+. .+.+.+.+++.+.+++++|+.
T Consensus 15 ~~~~~~~~i~~~i~~~~~~~l~~v~l~D~y~~~~l~~g~kS~~~rl~~~~~~~TLt~~ev~~~~~~i~~~l~~~~~~~ 92 (94)
T PF03147_consen 15 PEDVPFADIEEVIRSAGGPLLESVELFDVYRGEKLPEGKKSLTYRLTYQSPDRTLTDEEVNEIHDKIIKALEKKLGAE 92 (94)
T ss_dssp ETTS-HHHHHHHHHHHHTTTEEEEEEEEEEESTTSGTTEEEEEEEEEE--SSS---HHHHHHHHHHHHHHHHHTCT-B
T ss_pred CCCCCHHHHHHHHHHhCccceeEEEEEEEEcCCCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHhCcE
Confidence 3455566777777654 347777777777622 367777777777654 266778888889988888754
No 50
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=42.74 E-value=1.6e+02 Score=29.08 Aligned_cols=69 Identities=16% Similarity=0.125 Sum_probs=42.0
Q ss_pred CcccHHHHHHHHhcCcCccccceE---------EEEEe--------eCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhC
Q 045866 328 REVDATRLEKGLCEMEEVVAIHEL---------HIWAI--------TVGKVLLACHVKIKPEADADMVLENVIDYIKREY 390 (406)
Q Consensus 328 ~~~~~~~i~~~l~~~~~V~~v~~l---------~~w~~--------~~g~~~~~v~V~v~~~~~~~~i~~~v~~~l~~~~ 390 (406)
++.+.+.+++.+++.|+|.++.-+ +-|.- .++.+--.+.|+++++.+..+..+++++++++..
T Consensus 77 ~~~~~~~l~~~l~~~~~V~~v~~iskeeAl~~l~~~~g~~~~l~~l~~nPLP~si~V~l~~~~~~~~~~~~l~~~l~~~~ 156 (309)
T TIGR00439 77 AQSDADTVVSLLTRDKGVENINYISREDGLAEFQSWSGFGNLLSMLDGNPLPAVFIVTPDPAFTPAEMQAILRDNITKIP 156 (309)
T ss_pred CHHHHHHHHHHHhCCCCccEEEEECHHHHHHHHHHhcCCchhhhhcccCCCCCeEEEEeCCCCChHHHHHHHHHHHhcCC
Confidence 344456788888888888776432 22210 1111223455666665566677888888887766
Q ss_pred CCceEE
Q 045866 391 NISHVT 396 (406)
Q Consensus 391 ~i~~vt 396 (406)
+|..+.
T Consensus 157 gV~~v~ 162 (309)
T TIGR00439 157 GVEEVR 162 (309)
T ss_pred CCCccc
Confidence 777663
No 51
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=40.95 E-value=1.5e+02 Score=25.55 Aligned_cols=22 Identities=18% Similarity=-0.014 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 045866 66 KLLIVVVLCIIFMGVEVVGGMK 87 (406)
Q Consensus 66 ~l~i~~~~~~~~~~~e~v~g~~ 87 (406)
+-.+++++|+++.++-..++.+
T Consensus 76 ~~qls~v~Nilvsv~~~~~~~~ 97 (142)
T PF11712_consen 76 KRQLSTVFNILVSVFAVFFAGW 97 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888887766554444
No 52
>PF01390 SEA: SEA domain; InterPro: IPR000082 SEA is an extracellular domain associated with O-glycosylation []. Proteins found to contain SEA-modules include, agrin, enterokinase, 63 kDa Strongylocentrotus purpuratus (Purple sea urchin) sperm protein, perlecan (heparan sulphate proteoglycan core, mucin 1 and the cell surface antigen, 114/A10, and two functionally uncharacterised, probably extracellular, Caenorhabditis elegans proteins. Despite the functional diversity of these adhesive proteins, a common denominator seems to be their existence in heavily glycosylated environments. In addition, the better characterised proteins all contain O-glycosidic-linked carbohydrates such as heparan sulphate that contribute considerably to their molecular masses. The common module might regulate or assist binding to neighbouring carbohydrate moieties. Enterokinase, the initiator of intestinal digestion, is a mosaic protease composed of a distinctive assortment of domains []. ; PDB: 2ACM_B 1IVZ_A 2E7V_A.
Probab=40.82 E-value=1.4e+02 Score=23.70 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=32.1
Q ss_pred cccceEEEEEeeCCeEEEEEEEEeCCC--CCHHHHHHHHHHHHHH
Q 045866 346 VAIHELHIWAITVGKVLLACHVKIKPE--ADADMVLENVIDYIKR 388 (406)
Q Consensus 346 ~~v~~l~~w~~~~g~~~~~v~V~v~~~--~~~~~i~~~v~~~l~~ 388 (406)
..+..++++.+..|.+.+++.+.+.+. .....+.+.++..+.+
T Consensus 51 ~~~~~~~I~~f~~gsViv~~~~~f~~~~~~~~~~~~~~l~~~l~~ 95 (107)
T PF01390_consen 51 PGFVGVTITSFRPGSVIVDFDVIFDPPSSAPPADIEEALQNALQQ 95 (107)
T ss_dssp TTEEEEEEEEEEETEEEEEEEEEEETTT-S-HHHHHHHHHHHHCC
T ss_pred CCcceEEEEEEECCCEEEEEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 567788888888899999999999554 3456677777777765
No 53
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=38.34 E-value=95 Score=22.69 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=36.2
Q ss_pred cHHHHHHHHhcCcCccccceEEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEEe
Q 045866 331 DATRLEKGLCEMEEVVAIHELHIWAITVGKVLLACHVKIKPEADADMVLENVIDYIKREYNISHVTIQI 399 (406)
Q Consensus 331 ~~~~i~~~l~~~~~V~~v~~l~~w~~~~g~~~~~v~V~v~~~~~~~~i~~~v~~~l~~~~~i~~vtIqi 399 (406)
..+++.+.+.++|+|..++.+ + |.+-+-+++.++. .+.+.+-+.+.+.+..+|.++...+
T Consensus 11 ~~~~~~~~l~~~p~V~~~~~v-----t-G~~d~~~~v~~~d---~~~l~~~i~~~l~~~~gV~~~~t~i 70 (74)
T PF01037_consen 11 AYDEFAEALAEIPEVVECYSV-----T-GEYDLILKVRARD---MEELEEFIREKLRSIPGVRRTETSI 70 (74)
T ss_dssp HHHHHHHHHHTSTTEEEEEEE-----S-SSSSEEEEEEESS---HHHHHHHHHHTHHTSTTEEEEEEEE
T ss_pred hHHHHHHHHHcCCCEEEEEEE-----e-CCCCEEEEEEECC---HHHHHHHHHHHhhcCCCEEEEEEEE
Confidence 467888889999988665544 3 3443444555543 3344333445477666787766544
No 54
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=37.42 E-value=1.2e+02 Score=35.09 Aligned_cols=50 Identities=12% Similarity=0.277 Sum_probs=30.9
Q ss_pred HHHHHHhcCcCccccceEEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 045866 334 RLEKGLCEMEEVVAIHELHIWAITVGKVLLACHVKIKPEADADMVLENVIDYIKR 388 (406)
Q Consensus 334 ~i~~~l~~~~~V~~v~~l~~w~~~~g~~~~~v~V~v~~~~~~~~i~~~v~~~l~~ 388 (406)
.+++.+..++| ++.++......|. ..+.|+++++.+.++..+++++++.+
T Consensus 64 plE~~l~~v~g---v~~i~S~S~~~G~--s~i~v~f~~g~d~~~a~~~V~~~v~~ 113 (1037)
T PRK10555 64 VIEQNMTGLDN---LMYMSSQSSGTGQ--ASVTLSFKAGTDPDEAVQQVQNQLQS 113 (1037)
T ss_pred HHHHHhcCCCC---ceEEEEEecCCCe--EEEEEEEECCCCHHHHHHHHHHHHHH
Confidence 35555555554 4555554321343 34567777888888888888887763
No 55
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=37.17 E-value=73 Score=22.67 Aligned_cols=31 Identities=13% Similarity=0.411 Sum_probs=20.6
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 045866 122 TPRQSYGFFRIEILGALVSIQLIWLLAGILVY 153 (406)
Q Consensus 122 ~~~~pyG~~R~E~l~~l~~~~~l~~~~~~i~~ 153 (406)
+..|-|-|.++. +++|+.+.+|+++++.++.
T Consensus 4 ~~pF~YDy~tLr-igGLi~A~vlfi~Gi~iil 34 (50)
T PF02038_consen 4 DDPFYYDYETLR-IGGLIFAGVLFILGILIIL 34 (50)
T ss_dssp CSGGGGCHHHHH-HHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccchhHhh-ccchHHHHHHHHHHHHHHH
Confidence 356778887775 4666667777777776543
No 56
>PRK10263 DNA translocase FtsK; Provisional
Probab=36.87 E-value=8.1e+02 Score=29.37 Aligned_cols=8 Identities=13% Similarity=0.700 Sum_probs=3.9
Q ss_pred CchhhhHH
Q 045866 291 EWKIIDLI 298 (406)
Q Consensus 291 ~~~~~D~i 298 (406)
+|.|++.+
T Consensus 180 glSwlsIl 187 (1355)
T PRK10263 180 GWSWVTIA 187 (1355)
T ss_pred hhHHHHHH
Confidence 55555433
No 57
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=36.72 E-value=1.8e+02 Score=23.74 Aligned_cols=17 Identities=29% Similarity=0.527 Sum_probs=9.3
Q ss_pred cCCCCCCCCCCCCCCCC
Q 045866 193 HGHGHNHGHDHSHGHDA 209 (406)
Q Consensus 193 ~~h~~~~~h~~~h~~g~ 209 (406)
|++.||-+.+++.+|+.
T Consensus 60 Hg~n~glG~~pGG~~~~ 76 (106)
T PF14654_consen 60 HGPNHGLGWGPGGNHGV 76 (106)
T ss_pred CCccccccCCCCCCccC
Confidence 55555555655554443
No 58
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=36.42 E-value=1.3e+02 Score=34.94 Aligned_cols=49 Identities=12% Similarity=0.238 Sum_probs=29.2
Q ss_pred HHHHHhcCcCccccceEEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 045866 335 LEKGLCEMEEVVAIHELHIWAITVGKVLLACHVKIKPEADADMVLENVIDYIKR 388 (406)
Q Consensus 335 i~~~l~~~~~V~~v~~l~~w~~~~g~~~~~v~V~v~~~~~~~~i~~~v~~~l~~ 388 (406)
+++.+..++ ++++++......|. ..+.++++.+.+.+....++++++.+
T Consensus 65 iE~~l~~v~---gi~~i~S~S~~~G~--s~I~v~f~~g~d~~~a~~~V~~~i~~ 113 (1049)
T PRK15127 65 IEQNMNGID---NLMYMSSNSDSTGT--VQITLTFESGTDADIAQVQVQNKLQL 113 (1049)
T ss_pred HHHHhcCCC---CceEEEEEecCCce--EEEEEEEECCCChHHHHHHHHHHHHH
Confidence 455454444 55666655321343 34566777777877777777777764
No 59
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=36.37 E-value=1.7e+02 Score=22.81 Aligned_cols=57 Identities=5% Similarity=0.197 Sum_probs=37.2
Q ss_pred cccceEEEEEeeCCeEEEEEEEEeCCC--CCHHHHHHHHHHHHHHhCCCceEEEEe--ccCC
Q 045866 346 VAIHELHIWAITVGKVLLACHVKIKPE--ADADMVLENVIDYIKREYNISHVTIQI--EREC 403 (406)
Q Consensus 346 ~~v~~l~~w~~~~g~~~~~v~V~v~~~--~~~~~i~~~v~~~l~~~~~i~~vtIqi--e~~~ 403 (406)
.++..+.+.+ ++.++.+.++..-|.- .....-++++++.|++.+++....|++ ++-.
T Consensus 18 agis~IeI~R-t~~~i~I~I~tarPg~vIG~~G~~i~~L~~~L~k~~~~~~~~i~v~~~~v~ 78 (81)
T cd02413 18 DGYSGVEVRV-TPTRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFNFPEGSVELYAEKVA 78 (81)
T ss_pred CCeeeEEEEE-cCCeEEEEEEeCCCceEECCCchhHHHHHHHHHHHhCCCCCeEEEEEEEcc
Confidence 4667777777 4677777777665553 122234577777787777877777777 6543
No 60
>PRK00701 manganese transport protein MntH; Reviewed
Probab=35.45 E-value=5.3e+02 Score=26.76 Aligned_cols=61 Identities=11% Similarity=0.047 Sum_probs=30.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHH--H----HHHHHHhhccc---cccchhHHHHHHHHHHHHHHHHHHH
Q 045866 127 YGFFRIEILGALVSIQLIWLLAGIL--V----YEAIVRLIHEN---GQVQGFLMFVVSAIGLAVNIAMAFF 188 (406)
Q Consensus 127 yG~~R~E~l~~l~~~~~l~~~~~~i--~----~eai~~li~~~---~~~~~~~~~~v~~~~l~vn~~~~~~ 188 (406)
.||.|+|.+...+.+++++...... . .|-+.. +.|. -+....+..+++.+|..+...+.++
T Consensus 163 ~~y~~~E~i~~~lv~~m~l~f~~~~~~~~P~~~~v~~G-l~P~~~~~p~~~~~~~~iaiiGttv~P~~~f~ 232 (439)
T PRK00701 163 RGFRPLEAIIGGLLLVIAAAFIVELFLAQPDWAAVLKG-FIPSSEILPNPEALYLAAGILGATVMPHNLYL 232 (439)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHheeCCCHHHHhcc-cCCCCcCCCCccHHHHHHHHHHHHHhHHHHHH
Confidence 6799999997755443332222221 1 122233 2233 1112345666777777766555443
No 61
>PRK05783 hypothetical protein; Provisional
Probab=34.61 E-value=1.2e+02 Score=23.95 Aligned_cols=59 Identities=20% Similarity=0.351 Sum_probs=32.4
Q ss_pred HHHHHHHhcCcCccccceEEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHh--CC--CceEEEEecc
Q 045866 333 TRLEKGLCEMEEVVAIHELHIWAITVGKVLLACHVKIKPEADADMVLENVIDYIKRE--YN--ISHVTIQIER 401 (406)
Q Consensus 333 ~~i~~~l~~~~~V~~v~~l~~w~~~~g~~~~~v~V~v~~~~~~~~i~~~v~~~l~~~--~~--i~~vtIqie~ 401 (406)
+.+++.|... |...|.++|+ ||++ .+.++.+ +.++..+++.+.+++. .| |++.+|.+++
T Consensus 21 ~aI~~aL~~l-g~~~V~~VRv-----GK~i---el~l~~~-~~e~a~~~v~~mc~~LrLaNpVIe~y~i~~~~ 83 (84)
T PRK05783 21 ETIQRYVIER-YTGNIIEVRA-----GKYL---VFKIEAN-SPEEAKELALKIAREGRLYNPIVHKIVVRVRR 83 (84)
T ss_pred HHHHHHHHHc-CCCCcceEEe-----eEEE---EEEEcCC-CHHHHHHHHHHHHHhcCcCCceeEEEEEEEEe
Confidence 4677777554 4445777763 4543 4445443 3333444444444443 23 7888888775
No 62
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=33.56 E-value=1.5e+02 Score=34.35 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=29.3
Q ss_pred HHHHHHhcCcCccccceEEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 045866 334 RLEKGLCEMEEVVAIHELHIWAITVGKVLLACHVKIKPEADADMVLENVIDYIKR 388 (406)
Q Consensus 334 ~i~~~l~~~~~V~~v~~l~~w~~~~g~~~~~v~V~v~~~~~~~~i~~~v~~~l~~ 388 (406)
.+++.+.+++| +++++.+.. .|. ..+.|+++.+.+.+...+++++++.+
T Consensus 75 piE~~l~~v~g---v~~i~S~S~-~G~--s~i~v~f~~g~d~~~a~~ev~~~i~~ 123 (1040)
T PRK10503 75 PLERQFGQMSG---LKQMSSQSS-GGA--SVITLQFQLTLPLDVAEQEVQAAINA 123 (1040)
T ss_pred HHHHHhcCCCC---ccEEEEEec-CCe--EEEEEEEECCCChHHHHHHHHHHHHH
Confidence 45555555554 566666653 444 34556666766776667777776654
No 63
>PRK09579 multidrug efflux protein; Reviewed
Probab=33.22 E-value=1.5e+02 Score=34.29 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=30.2
Q ss_pred HHHHHHhcCcCccccceEEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHH
Q 045866 334 RLEKGLCEMEEVVAIHELHIWAITVGKVLLACHVKIKPEADADMVLENVIDYIK 387 (406)
Q Consensus 334 ~i~~~l~~~~~V~~v~~l~~w~~~~g~~~~~v~V~v~~~~~~~~i~~~v~~~l~ 387 (406)
.+++.+..++ ++++++.... .|. ..+.|+++.+.+.+....++++++.
T Consensus 66 plE~~L~~v~---gi~~i~S~S~-~G~--s~I~v~f~~g~d~~~a~~~v~~~v~ 113 (1017)
T PRK09579 66 PLQQSLASAE---GIDYMTSVSR-QNF--SIISIYARIGADSDRLFTELLAKAN 113 (1017)
T ss_pred HHHHHhcCCC---CceEEEEEec-CCe--EEEEEEEECCCCHHHHHHHHHHHHH
Confidence 3555555555 4566665543 444 4556677777787777777777775
No 64
>PRK09577 multidrug efflux protein; Reviewed
Probab=32.06 E-value=1.7e+02 Score=33.84 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=30.9
Q ss_pred HHHHHHhcCcCccccceEEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 045866 334 RLEKGLCEMEEVVAIHELHIWAITVGKVLLACHVKIKPEADADMVLENVIDYIKR 388 (406)
Q Consensus 334 ~i~~~l~~~~~V~~v~~l~~w~~~~g~~~~~v~V~v~~~~~~~~i~~~v~~~l~~ 388 (406)
.+++.+..++|+ ++++... ..| ...+.|+++++.+.+....++++++.+
T Consensus 64 plE~~L~~v~gv---~~i~S~S-~~G--~s~I~v~f~~g~d~~~a~~~V~~~v~~ 112 (1032)
T PRK09577 64 LIEREMNGAPGL---LYTSATS-SAG--QASLSLTFKQGVNADLAAVEVQNRLKT 112 (1032)
T ss_pred HHHHHhcCCCCc---eEEEEEe-cCC--eEEEEEEEECCCChHHHHHHHHHHHHH
Confidence 455556555655 4555443 234 356678888888887777777777664
No 65
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=31.72 E-value=1.4e+02 Score=25.65 Aligned_cols=53 Identities=9% Similarity=0.344 Sum_probs=36.2
Q ss_pred ccHHHHHHHHhcCcCccccceEEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCc
Q 045866 330 VDATRLEKGLCEMEEVVAIHELHIWAITVGKVLLACHVKIKPEADADMVLENVIDYIKREYNIS 393 (406)
Q Consensus 330 ~~~~~i~~~l~~~~~V~~v~~l~~w~~~~g~~~~~v~V~v~~~~~~~~i~~~v~~~l~~~~~i~ 393 (406)
+..+.+++.+.+. +..+++.|- ..|+++++ ++.+...+..++++.|++.||..
T Consensus 19 i~MaeLr~~l~~~----Gf~~V~Tyi-~SGNvvf~------~~~~~~~l~~~ie~~l~~~fG~~ 71 (137)
T PF08002_consen 19 IKMAELREALEDL----GFTNVRTYI-QSGNVVFE------SDRDPAELAAKIEKALEERFGFD 71 (137)
T ss_dssp --HHHHHHHHHHC----T-EEEEEET-TTTEEEEE------ESS-HHHHHHHHHHHHHHH-TT-
T ss_pred ccHHHHHHHHHHc----CCCCceEEE-eeCCEEEe------cCCChHHHHHHHHHHHHHhcCCC
Confidence 4566788877663 567777774 67776544 56788899999999999999854
No 66
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=30.82 E-value=1.1e+02 Score=20.08 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhC
Q 045866 66 KLLIVVVLCIIFMGVEVVGGMKAN 89 (406)
Q Consensus 66 ~l~i~~~~~~~~~~~e~v~g~~s~ 89 (406)
.|.+.+..+++|.+.-++.|+.+|
T Consensus 3 ~LK~~Vy~vV~ffv~LFifGflsn 26 (36)
T PF02532_consen 3 TLKIFVYTVVIFFVSLFIFGFLSN 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeehhhHHHHHHHHhccccCC
Confidence 456667777777777788888776
No 67
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=30.21 E-value=3e+02 Score=27.09 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=20.9
Q ss_pred HccCCCcccHHHHHHHHhcCcCccccc
Q 045866 323 MESTPREVDATRLEKGLCEMEEVVAIH 349 (406)
Q Consensus 323 l~~~p~~~~~~~i~~~l~~~~~V~~v~ 349 (406)
++..+++.+.+.+++.+++++||.++.
T Consensus 65 L~~~~~~~~~~~v~~~i~~~~gV~~v~ 91 (297)
T COG2177 65 LQIDADQDDAALVREKIEGIPGVKSVR 91 (297)
T ss_pred EecCCChHHHHHHHHHHhcCCCcceEE
Confidence 466666677778999999999887764
No 68
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=29.08 E-value=3e+02 Score=21.91 Aligned_cols=26 Identities=8% Similarity=0.072 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCC
Q 045866 102 SDVAAFAISLFSIWASGWEATPRQSY 127 (406)
Q Consensus 102 ~D~~s~~i~l~a~~~s~~~~~~~~py 127 (406)
.-++..+.++++...+.+..+.+||+
T Consensus 79 ~~l~~~v~~I~~~~~a~~g~~~~~P~ 104 (109)
T PF09685_consen 79 LWLLSLVLSIIGAIKANKGEPYRYPF 104 (109)
T ss_pred HHHHHHHHHHHHHHHHHCCCeeecCe
Confidence 33445566667777777777788886
No 69
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=28.37 E-value=2.2e+02 Score=33.12 Aligned_cols=49 Identities=10% Similarity=0.182 Sum_probs=29.2
Q ss_pred HHHHHhcCcCccccceEEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 045866 335 LEKGLCEMEEVVAIHELHIWAITVGKVLLACHVKIKPEADADMVLENVIDYIKR 388 (406)
Q Consensus 335 i~~~l~~~~~V~~v~~l~~w~~~~g~~~~~v~V~v~~~~~~~~i~~~v~~~l~~ 388 (406)
+++.+.+ +.++.+++.+....|. ..+.|+++++.+.+...+++++++.+
T Consensus 65 lE~~l~~---v~gv~~i~S~s~~~g~--s~i~v~f~~~~d~~~a~~~v~~~l~~ 113 (1044)
T TIGR00915 65 IEQQMNG---IDGLRYMSSESDSDGS--MTITLTFEQGTDPDIAQVQVQNKLQL 113 (1044)
T ss_pred HHHHhcC---CCCceEEEEEEcCCCe--EEEEEEEECCCChHHHHHHHHHHHHH
Confidence 4444544 4456666665421333 46677777777777767777777654
No 70
>PF07136 DUF1385: Protein of unknown function (DUF1385); InterPro: IPR010787 This family contains a number of hypothetical bacterial proteins of unknown function approximately 300 residues in length. Some family members are predicted to be metal-dependent.
Probab=28.03 E-value=5.3e+02 Score=24.52 Aligned_cols=30 Identities=7% Similarity=-0.015 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045866 131 RIEILGALVSIQLIWLLAGILVYEAIVRLI 160 (406)
Q Consensus 131 R~E~l~~l~~~~~l~~~~~~i~~eai~~li 160 (406)
+.+....++.++.+...-+.++=..+..++
T Consensus 40 ~~~~~~~~~~s~~~~i~lF~~lP~~l~~~~ 69 (236)
T PF07136_consen 40 SWEMALTVILSLALAIGLFVVLPTFLAGLL 69 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544444444444444
No 71
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=28.00 E-value=48 Score=32.20 Aligned_cols=17 Identities=29% Similarity=0.216 Sum_probs=8.1
Q ss_pred CCCCCCCCccCCccccc
Q 045866 224 DEHLHSHETDRTEPLLS 240 (406)
Q Consensus 224 ~~~~~~~~~~~~~~l~~ 240 (406)
|+|+|.+..|..-|+..
T Consensus 141 ~dH~H~G~~d~H~Wl~P 157 (318)
T COG4531 141 HDHHHEGEYDMHLWLSP 157 (318)
T ss_pred ccccCCCCcCceeeech
Confidence 33444334455666643
No 72
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=27.65 E-value=7.5e+02 Score=26.23 Aligned_cols=25 Identities=8% Similarity=0.057 Sum_probs=11.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Q 045866 91 LAVLTDAAHLLSDVAAFAISLFSIW 115 (406)
Q Consensus 91 ~aLlaDa~h~l~D~~s~~i~l~a~~ 115 (406)
..+=.|+++...-.+..++.++.+.
T Consensus 325 pslG~~~i~~~~~A~lig~ilV~i~ 349 (498)
T PRK05812 325 PSLGADSIRAGLIAGLIGLALVLLF 349 (498)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555444444444443
No 73
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.55 E-value=5.2e+02 Score=24.22 Aligned_cols=93 Identities=17% Similarity=0.198 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHH----HHHhhhCcHHHHHhhHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCCchh--HHHHHHH
Q 045866 66 KLLIVVVLCIIFMGVEV----VGGMKANSLAVLTDAAHLLSDVAAFAISLFSIWASGWE--ATPRQSYGFF--RIEILGA 137 (406)
Q Consensus 66 ~l~i~~~~~~~~~~~e~----v~g~~s~S~aLlaDa~h~l~D~~s~~i~l~a~~~s~~~--~~~~~pyG~~--R~E~l~~ 137 (406)
.=..++..|++|++.+. +.+....=.++++|-.-+..-.+..++..+-+|- .|. +++..|.|-+ |.-+..+
T Consensus 74 vG~~Afla~~~flvlD~~f~qISsv~~RkraVl~Dl~~SalwtflwfvGFc~l~n-qwqvs~p~~~~~~a~saraaIafs 152 (233)
T KOG4016|consen 74 VGVLAFLACLAFLVLDVYFPQISSVKDRKRAVLADLGVSALWAFLWFVGFCFLAN-QWQVSKPKENPLGAGSARAAIAFS 152 (233)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCCCCCCcCcchHHHHHHHH
Confidence 34566777888888775 4455666778999988888888777777776654 333 4445666654 4434444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 045866 138 LVSIQLIWLLAGILVYEAIVRLIHEN 163 (406)
Q Consensus 138 l~~~~~l~~~~~~i~~eai~~li~~~ 163 (406)
|+ +++-|.... +-|.+|+-.+.
T Consensus 153 ff-SilsW~~~A---~lA~qR~~~g~ 174 (233)
T KOG4016|consen 153 FF-SILSWGGQA---VLAFQRYRIGA 174 (233)
T ss_pred HH-HHHHHHHHH---HHHHHHHHhcC
Confidence 43 334444433 44667776543
No 74
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=27.34 E-value=73 Score=32.31 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=35.1
Q ss_pred HHHHHhcCCCCCCCCCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045866 112 FSIWASGWEATPRQSYGFFRIEI-LGALVSIQLIWLLAGILVYEAIVRLIHE 162 (406)
Q Consensus 112 ~a~~~s~~~~~~~~pyG~~R~E~-l~~l~~~~~l~~~~~~i~~eai~~li~~ 162 (406)
++.|++..|...-..||-.++|+ +..++..++++++.+++++--+.+++..
T Consensus 17 ~~~~~~~~~Gyv~i~~~~~~ie~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (398)
T PRK10747 17 VGPMIAGHQGYVLIQTDNYNIETSVTGLAIILILAMVVLFAIEWLLRRIFRT 68 (398)
T ss_pred HHHHHcCCCCeEEEEECCEEEEehHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677777777778888888987 5555555566666666666667766653
No 75
>KOG1558 consensus Fe2+/Zn2+ regulated transporter [Inorganic ion transport and metabolism]
Probab=27.33 E-value=6.4e+02 Score=25.19 Aligned_cols=54 Identities=26% Similarity=0.293 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-------chhHHHHHHHHHHHHHHHHHHH
Q 045866 135 LGALVSIQLIWLLAGILVYEAIVRLIHENGQV-------QGFLMFVVSAIGLAVNIAMAFF 188 (406)
Q Consensus 135 l~~l~~~~~l~~~~~~i~~eai~~li~~~~~~-------~~~~~~~v~~~~l~vn~~~~~~ 188 (406)
-...+.+++-.+.++.++|-++..++-.+-.- .....++..++|..++..+..|
T Consensus 266 ~~~i~~gvL~alAaGtliY~~lvElla~ef~~~~~~~~~~~i~~~i~~~~G~alms~l~~w 326 (327)
T KOG1558|consen 266 GALITSGVLEALAAGTLIYVALVELLAAEFANPKMQSLKLQILKLIALLLGFALMSLLAIW 326 (327)
T ss_pred hhHHHHHHHHHHhhhHhHHHHHHHHhHHHhcCchhhhHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 34556777788888889999998888543222 1234444555666666655544
No 76
>PRK11670 antiporter inner membrane protein; Provisional
Probab=27.17 E-value=3.3e+02 Score=27.55 Aligned_cols=69 Identities=9% Similarity=0.084 Sum_probs=41.5
Q ss_pred HHHHHHHhcC--cC----ccccceEEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEEecc
Q 045866 333 TRLEKGLCEM--EE----VVAIHELHIWAITVGKVLLACHVKIKPEADADMVLENVIDYIKREYNISHVTIQIER 401 (406)
Q Consensus 333 ~~i~~~l~~~--~~----V~~v~~l~~w~~~~g~~~~~v~V~v~~~~~~~~i~~~v~~~l~~~~~i~~vtIqie~ 401 (406)
+++++.|..+ |+ +.+..-++--.+.++++.+.+.+..+.....+.+.+++++.++...++..++|.+..
T Consensus 15 ~~v~~~l~~v~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (369)
T PRK11670 15 AMVAGTLANFQHPTLKHNLTTLKALHHVALLDDTLHIELVMPFVWNSAFEELKEQCSAELLRITGAKAIDWKLSH 89 (369)
T ss_pred HHHHHHHhcCCCCCCCCChhhhCCeeEEEEeCCEEEEEEEECCCCchHHHHHHHHHHHHHHhcCCCceEEEEEee
Confidence 5566655553 21 223333332234466666666555555556777899999999865688888776653
No 77
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=27.17 E-value=7.4e+02 Score=26.35 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHH
Q 045866 169 FLMFVVSAIGLAVNIAM 185 (406)
Q Consensus 169 ~~~~~v~~~~l~vn~~~ 185 (406)
.+++.+.++..++|+++
T Consensus 381 ~l~i~fill~a~iNLfi 397 (502)
T PF03806_consen 381 PLIIGFILLTAFINLFI 397 (502)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34445566677777753
No 78
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=26.88 E-value=1.9e+02 Score=22.48 Aligned_cols=61 Identities=15% Similarity=0.333 Sum_probs=30.4
Q ss_pred HHHHHHHhcCcCccccceEEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEEec
Q 045866 333 TRLEKGLCEMEEVVAIHELHIWAITVGKVLLACHVKIKPEADADMVLENVIDYIKREYNISHVTIQIE 400 (406)
Q Consensus 333 ~~i~~~l~~~~~V~~v~~l~~w~~~~g~~~~~v~V~v~~~~~~~~i~~~v~~~l~~~~~i~~vtIqie 400 (406)
+.+++.+..+ |..+|.++|+ |+++ .+.+.-+....+.+.++++.+.+.-..-|++.+|.++
T Consensus 19 ~ai~~al~~l-G~~~v~~Vr~-----GK~~-~l~~~~~~~e~a~~~v~~i~~~LLaNpvie~y~i~~~ 79 (80)
T PF02700_consen 19 EAIKRALHRL-GYDGVKDVRV-----GKYI-ELELEADDEEEAEEQVEEICEKLLANPVIEDYEIEVE 79 (80)
T ss_dssp HHHHHHHHHT-T-TTEEEEEE-----EEEE-EEEEE-SSHHHHHHHHHHHHHHTTS-TTTEEEEEEEE
T ss_pred HHHHHHHHHc-CCcccCcEEE-----EEEE-EEEEeCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEE
Confidence 4577777654 6666777773 3442 3334333222333444444443321112788888775
No 79
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=26.79 E-value=2.5e+02 Score=32.58 Aligned_cols=89 Identities=15% Similarity=0.218 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHH-HHHHHccCCCcc---------cH--------HHHHHHHhcCcCccccceEEEEE
Q 045866 294 IIDLICTLAFSAIVLGTTFRMLRNI-LEILMESTPREV---------DA--------TRLEKGLCEMEEVVAIHELHIWA 355 (406)
Q Consensus 294 ~~D~i~sliis~~il~~~~~l~r~~-~~~Ll~~~p~~~---------~~--------~~i~~~l~~~~~V~~v~~l~~w~ 355 (406)
+=-|+.+++++++++..|+-.++.- ...+=+-+||.+ .+ +.+|+.+. ++.++.++..-.
T Consensus 7 I~rpv~~~vl~i~i~l~G~~a~~~Lpv~~~P~i~~P~i~V~t~ypGAsae~ve~~Vt~piE~~l~---~i~gi~~i~S~S 83 (1009)
T COG0841 7 IRRPVFAWVLAILILLAGLLAIRTLPVAQYPDVAPPTIVVSATYPGASAETVEDSVTQPIEQQLN---GLDGLDYMSSTS 83 (1009)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHhCChhhCCCCCCCEEEEEEecCCCCHHHHHHHHhHHHHHHHh---cCCCccEEEEEE
Confidence 4456667777766666665444332 222222233221 11 23444444 444556665554
Q ss_pred eeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 045866 356 ITVGKVLLACHVKIKPEADADMVLENVIDYIKR 388 (406)
Q Consensus 356 ~~~g~~~~~v~V~v~~~~~~~~i~~~v~~~l~~ 388 (406)
. .|.. .+.|+++.+.+.+....++++++.+
T Consensus 84 ~-~G~s--~itv~F~~~~d~d~A~~~V~~kv~~ 113 (1009)
T COG0841 84 S-SGSS--SITVTFELGTDPDTAAVQVQNKIQQ 113 (1009)
T ss_pred c-CCcE--EEEEEEeCCCChHHHHHHHHHHHHH
Confidence 3 4554 4456666666666555566666653
No 80
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=26.60 E-value=2.6e+02 Score=24.76 Aligned_cols=68 Identities=18% Similarity=0.118 Sum_probs=51.8
Q ss_pred ccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Q 045866 255 KKQRNINVQGAYLHVLGDSIQSVGVMIGGAIIWYKPEWKIIDLICTLAFSAIVLGTTFRMLRNILEILME 324 (406)
Q Consensus 255 ~~~~s~~l~a~~~h~~~D~l~sv~vli~~~l~~~~~~~~~~D~i~sliis~~il~~~~~l~r~~~~~Ll~ 324 (406)
++.+...+....-...+|.+....+..+...... ..+++-.+..++-++++++.+++++|+..+...+
T Consensus 20 ~~G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~--~~~~~~~~l~~~G~~~L~~lg~~~~~~~~~~~~~ 87 (191)
T PF01810_consen 20 RKGFKAGLPVALGAALGDLIYILLAVFGLSALLK--SSPWLFMILKLLGALYLLYLGYKLLRSKFSSKSS 87 (191)
T ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHHHhcccCcchh
Confidence 4455566777777888998888877776554432 3678888999999999999999999987765543
No 81
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=26.58 E-value=4.6e+02 Score=25.78 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc----CCchhhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 045866 263 QGAYLHVLGDSIQSVGVMIGGAIIWYK----PEWKIIDLICTLAFSAIVLGTTFRMLRNILE 320 (406)
Q Consensus 263 ~a~~~h~~~D~l~sv~vli~~~l~~~~----~~~~~~D~i~sliis~~il~~~~~l~r~~~~ 320 (406)
-+.......|.+.++-.++-++..+.. .+|.+-=..+++.++++++..-++..+|+++
T Consensus 107 ~t~~ir~~i~~La~vPSIV~GLFg~~~fV~~~g~~~S~laGaLaLall~LP~iirtteeaL~ 168 (292)
T COG0581 107 LTKVIRFAIDILASVPSIVYGLFGLGFFVVTLGFGFSALAGALALALLMLPVVIRTTEEALR 168 (292)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888999999777766654431 2444444556777777776666666655553
No 82
>PRK10263 DNA translocase FtsK; Provisional
Probab=26.53 E-value=1e+03 Score=28.66 Aligned_cols=6 Identities=33% Similarity=0.329 Sum_probs=2.4
Q ss_pred HHHHHH
Q 045866 65 LKLLIV 70 (406)
Q Consensus 65 r~l~i~ 70 (406)
|++.-.
T Consensus 20 rrL~E~ 25 (1355)
T PRK10263 20 RRLLEA 25 (1355)
T ss_pred HHHHHH
Confidence 444433
No 83
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=25.77 E-value=2.3e+02 Score=32.79 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=28.2
Q ss_pred HHHHHHhcCcCccccceEEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 045866 334 RLEKGLCEMEEVVAIHELHIWAITVGKVLLACHVKIKPEADADMVLENVIDYIKR 388 (406)
Q Consensus 334 ~i~~~l~~~~~V~~v~~l~~w~~~~g~~~~~v~V~v~~~~~~~~i~~~v~~~l~~ 388 (406)
.+++.+.+++||+ +++... ..|.. .+.++++++.+.+....++++++.+
T Consensus 66 piE~~l~~i~gv~---~i~S~s-~~G~s--~i~l~f~~~~d~~~a~~~v~~~v~~ 114 (1025)
T PRK10614 66 PLERSLGRIAGVN---EMTSSS-SLGST--RIILQFDFDRDINGAARDVQAAINA 114 (1025)
T ss_pred HHHHHhcCCCCce---EEEEEe-cCCeE--EEEEEEECCCChHHHHHHHHHHHHH
Confidence 4666666666654 444443 34553 4456666666666666666666653
No 84
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=25.64 E-value=3.8e+02 Score=26.36 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=38.5
Q ss_pred CcccHHHHHHHHhcCcCccccceE---------EEEE--------eeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhC
Q 045866 328 REVDATRLEKGLCEMEEVVAIHEL---------HIWA--------ITVGKVLLACHVKIKPEADADMVLENVIDYIKREY 390 (406)
Q Consensus 328 ~~~~~~~i~~~l~~~~~V~~v~~l---------~~w~--------~~~g~~~~~v~V~v~~~~~~~~i~~~v~~~l~~~~ 390 (406)
++.+.+++++.+++.|+|.++.-+ +-|- +..+.+--.+.|.++++.+..+..+++.+++++..
T Consensus 77 ~~~~~~~l~~~L~~~~~V~~v~~vskeeal~~l~~~~g~~~~l~~l~~nPLP~si~V~~~~~~~~~~~~~~i~~~l~~~~ 156 (309)
T PRK11026 77 DDDAANAVVEQLKAEDGVEKVNYLSREEALGEFRNWSGFGGALDMLEENPLPAVAIIIPKLDFQSSEKLNTLRDRLAQIK 156 (309)
T ss_pred CHHHHHHHHHHHhCCCCcceEEEECHHHHHHHHHHhhCchHHHhhCcCCCCCCeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence 344556777888888887776432 1121 11122223355555554444455677888887665
Q ss_pred CCceEE
Q 045866 391 NISHVT 396 (406)
Q Consensus 391 ~i~~vt 396 (406)
+|.++.
T Consensus 157 ~V~~v~ 162 (309)
T PRK11026 157 GVDEVR 162 (309)
T ss_pred CCceee
Confidence 676654
No 85
>PF04865 Baseplate_J: Baseplate J-like protein; InterPro: IPR006949 The temperate bacteriophage P2 has four defined tail genes: V, J, W and I. Their order is the late gene promoter, VWJI, followed by the tail fibre genes H and G and then a transcription terminator. BAP V protein is the small spike at the tip of the tail and basal plate assembly protein J lies at the edge of the baseplate []. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred.
Probab=25.39 E-value=3.1e+02 Score=25.44 Aligned_cols=61 Identities=21% Similarity=0.208 Sum_probs=38.8
Q ss_pred HccCCCcccHHHHHHHHhcC-cCccccceEEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHH
Q 045866 323 MESTPREVDATRLEKGLCEM-EEVVAIHELHIWAITVGKVLLACHVKIKPEADADMVLENVIDYI 386 (406)
Q Consensus 323 l~~~p~~~~~~~i~~~l~~~-~~V~~v~~l~~w~~~~g~~~~~v~V~v~~~~~~~~i~~~v~~~l 386 (406)
+...+..-....++..++++ +||.++.-+.-|. ++|. +.+.|.-..+.-...++++++++|
T Consensus 112 ~~~~~~~gt~~dy~~~a~~~~~gV~~v~v~~~~~-~~G~--V~v~v~~~~g~~~~~l~~~V~~~i 173 (243)
T PF04865_consen 112 LRSPSRAGTADDYEYWALSVSPGVADVKVYPNWN-GPGT--VDVYVLGANGAPSQELLAAVQAYI 173 (243)
T ss_pred hcccccCCCHHHHHHHHHHhCCCceEEEEecCCC-CCCE--EEEEEccCCCCCCHHHHHHHHHHh
Confidence 33333434567788888888 9987777777665 3444 333333333345567889999999
No 86
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=25.37 E-value=6.7e+02 Score=24.82 Aligned_cols=62 Identities=24% Similarity=0.291 Sum_probs=36.0
Q ss_pred CchhHHHHHHHHHHHHH-HHHHHH-HHH----HHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHH
Q 045866 127 YGFFRIEILGALVSIQL-IWLLAG-ILV----YEAIVRLIHENGQVQGFLMFVVSAIGLAVNIAMAFF 188 (406)
Q Consensus 127 yG~~R~E~l~~l~~~~~-l~~~~~-~i~----~eai~~li~~~~~~~~~~~~~v~~~~l~vn~~~~~~ 188 (406)
.+|+++|.+...+++++ +.++.. ++. .+..+.++.|+.+......++++.+|..+.....++
T Consensus 111 ~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~~~~~~~~valiGttv~p~~lf~ 178 (358)
T PF01566_consen 111 GGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPGPGSLLFAVALIGTTVMPHNLFL 178 (358)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcchhHHHHHHHHHHHhhhHHHHHH
Confidence 46899999888777665 332222 222 233344443332223667777888887776665443
No 87
>PRK11023 outer membrane lipoprotein; Provisional
Probab=24.94 E-value=1.3e+02 Score=27.49 Aligned_cols=69 Identities=9% Similarity=0.089 Sum_probs=42.5
Q ss_pred HHccCCCcccHHHHHHHHhcCcCccccce-EEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEEec
Q 045866 322 LMESTPREVDATRLEKGLCEMEEVVAIHE-LHIWAITVGKVLLACHVKIKPEADADMVLENVIDYIKREYNISHVTIQIE 400 (406)
Q Consensus 322 Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~-l~~w~~~~g~~~~~v~V~v~~~~~~~~i~~~v~~~l~~~~~i~~vtIqie 400 (406)
|.+..|.+...++.++.+.+++||.+|++ +++. ... .+....+-..|..+++..|...-.+...-|+++
T Consensus 81 L~G~V~~~~~k~~A~~ia~~v~GV~~V~N~l~V~---~~~-------~~~~~~~D~~It~kik~~L~~~~~v~~~~I~V~ 150 (191)
T PRK11023 81 LTGQSPNAELSERAKQIAMGVEGVNEVYNEIRQG---QPI-------GLGTASKDTWITTKVRSQLLTSDSVKSSNVKVT 150 (191)
T ss_pred EEEEeCCHHHHHHHHHHHhcCCCceeecceeeec---ccc-------ccccccCcHHHHHHHHHHHhcCCCCCcceEEEE
Confidence 56778887777888888999999988775 3321 100 011112334578888888876555554444444
No 88
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.94 E-value=3.4e+02 Score=25.45 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=21.5
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 045866 122 TPRQSYGFFRIEILGALVSIQLIWLLAGI 150 (406)
Q Consensus 122 ~~~~pyG~~R~E~l~~l~~~~~l~~~~~~ 150 (406)
..++..+-.++|.+..++-+++++++++.
T Consensus 51 ~~~~~~~~~~lE~~WtviP~iil~~l~~~ 79 (228)
T MTH00140 51 SCRTILEAQKLETIWTIVPALILVFLALP 79 (228)
T ss_pred CCccccccchhhhhhhhHHHHHHHHHHHH
Confidence 34566788899999988877776665554
No 89
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=24.28 E-value=3e+02 Score=22.81 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=35.7
Q ss_pred HHHHHccCCC-c----ccHHHHHHHHhcCcCccccceEEEEEeeCCeEEEEEEEEe
Q 045866 319 LEILMESTPR-E----VDATRLEKGLCEMEEVVAIHELHIWAITVGKVLLACHVKI 369 (406)
Q Consensus 319 ~~~Ll~~~p~-~----~~~~~i~~~l~~~~~V~~v~~l~~w~~~~g~~~~~v~V~v 369 (406)
+..|+++.++ + +..+.|+++|..-|.+.+|.++-+-. .++.+.+++.|.-
T Consensus 53 le~lig~~~~~~~~~sEi~r~I~EaL~~d~rI~~V~~f~f~~-~~~~l~v~f~V~t 107 (112)
T PF10934_consen 53 LEDLIGKNYPREYVESEIEREIEEALLQDPRITSVENFSFEW-EGDSLYVSFTVTT 107 (112)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhcCCCcceEEEEEEEE-ECCEEEEEEEEEE
Confidence 4567777322 2 22356888888899999999999854 6778877777754
No 90
>PLN02601 beta-carotene hydroxylase
Probab=24.13 E-value=6.7e+02 Score=24.45 Aligned_cols=56 Identities=21% Similarity=0.084 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHH---HHHHHHHHHHHHHHHhcc
Q 045866 135 LGALVSIQLIWLLAGILVYEAIVRLIHENGQVQGFLMFV---VSAIGLAVNIAMAFFLGH 191 (406)
Q Consensus 135 l~~l~~~~~l~~~~~~i~~eai~~li~~~~~~~~~~~~~---v~~~~l~vn~~~~~~~~~ 191 (406)
+++..+++-+...++.-+|--+..-+++ .+++-..|+. +.+.+++.....+++..+
T Consensus 98 ~aa~~ss~gi~s~a~~a~y~rf~~~~~~-g~~p~~em~~~~al~lgtfvgMEf~Aw~aHK 156 (303)
T PLN02601 98 IAAVMSSFGITSMAIMAVYYRFSWQMKG-GEVSMLEMFGTFALSVGAAVGMEFWARWAHR 156 (303)
T ss_pred HHHHHHhhcHHHHHHHHHHHHHhhccCC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666665555555554543 3444332332 334455666666666544
No 91
>COG1183 PssA Phosphatidylserine synthase [Lipid metabolism]
Probab=24.10 E-value=6.2e+02 Score=23.97 Aligned_cols=67 Identities=21% Similarity=0.081 Sum_probs=43.4
Q ss_pred ccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045866 253 KQKKQRNINVQGAYLHVLGDSIQSVGVMIGGAIIWYKPEWKIIDLICTLAFSAIVLGTTFRMLRNILEILM 323 (406)
Q Consensus 253 ~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~l~~~~~~~~~~D~i~sliis~~il~~~~~l~r~~~~~Ll 323 (406)
.+|+.+....-+.-++.++|.++ .|+.-+.++..+. ... .+++-++..++++..++++.|-+...--
T Consensus 55 VAR~~~~~s~~G~~lDSLaD~Vs-FgVaPA~l~y~~~-~~~--~~~~~~~a~~~~~~~alRLArFN~~~~~ 121 (234)
T COG1183 55 VARKLNAKSAFGAELDSLADLVS-FGVAPALLLYSSG-LNT--GPLGLLAALLYVLCGALRLARFNVKTND 121 (234)
T ss_pred HHHhcCCcchHHHHHhHHHHHHH-hhHHHHHHHHHHh-ccC--CcHHHHHHHHHHHHHHHHHHHccCcccC
Confidence 45555555556888999999875 4555444443321 122 5677777778888888888887765433
No 92
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=24.04 E-value=2.2e+02 Score=20.77 Aligned_cols=10 Identities=0% Similarity=0.129 Sum_probs=4.4
Q ss_pred HHHHHHhhHH
Q 045866 57 AEERSASMLK 66 (406)
Q Consensus 57 ~~~~~~~~r~ 66 (406)
..+|+.+.|.
T Consensus 11 ~~~k~~E~~~ 20 (56)
T PF06796_consen 11 KSTKRSELKA 20 (56)
T ss_pred cchhHHHHHH
Confidence 3344444444
No 93
>PF06157 DUF973: Protein of unknown function (DUF973); InterPro: IPR009321 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=24.02 E-value=6.8e+02 Score=24.44 Aligned_cols=14 Identities=7% Similarity=0.017 Sum_probs=6.4
Q ss_pred HHHHHHHHhHHHHH
Q 045866 302 AFSAIVLGTTFRML 315 (406)
Q Consensus 302 iis~~il~~~~~l~ 315 (406)
+++.++.+.+..-.
T Consensus 162 ~IG~iL~yigl~~~ 175 (285)
T PF06157_consen 162 FIGYILMYIGLGEV 175 (285)
T ss_pred HHHHHHHHhhHHHH
Confidence 34444555544433
No 94
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=23.66 E-value=6.3e+02 Score=23.85 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=38.2
Q ss_pred ccccceEEEEEee-CCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEEecc
Q 045866 345 VVAIHELHIWAIT-VGKVLLACHVKIKPEADADMVLENVIDYIKREYNISHVTIQIER 401 (406)
Q Consensus 345 V~~v~~l~~w~~~-~g~~~~~v~V~v~~~~~~~~i~~~v~~~l~~~~~i~~vtIqie~ 401 (406)
-..+.+++..... ++++.+++++..+.. .+.-.+++..++....+|.++.-++++
T Consensus 169 ~~~~~~l~~~~~~~~~~~ei~a~l~~~~~--~~~~le~iv~~L~~~pgV~~v~W~~~~ 224 (225)
T PRK15385 169 AICLQGLGSVPAQEQGYKEIRAELVGHAD--YRKTRELIISRIGDNDNITAIHWSIDS 224 (225)
T ss_pred CCceEEeEeeecCCCCeEEEEEEEEecCC--chhhHHHHHHHHhCCCCeEEEEEEecC
Confidence 4567778776543 456666666666654 334577778888888899999988764
No 95
>PF15220 HILPDA: Hypoxia-inducible lipid droplet-associated
Probab=23.57 E-value=2.5e+02 Score=20.32 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhccccccchh
Q 045866 137 ALVSIQLIWLLAGIL-VYEAIVRLIHENGQVQGF 169 (406)
Q Consensus 137 ~l~~~~~l~~~~~~i-~~eai~~li~~~~~~~~~ 169 (406)
-++.++.+.++++|+ +.|+++.+++.+.+-..|
T Consensus 7 lyllgvvltllsifvrlmesle~llesp~pgs~w 40 (63)
T PF15220_consen 7 LYLLGVVLTLLSIFVRLMESLEGLLESPSPGSSW 40 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Confidence 345566677777776 899999999654333333
No 96
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=23.14 E-value=87 Score=31.84 Aligned_cols=51 Identities=14% Similarity=-0.007 Sum_probs=33.8
Q ss_pred HHHHHhcCCCCCCCCCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045866 112 FSIWASGWEATPRQSYGFFRIEI-LGALVSIQLIWLLAGILVYEAIVRLIHE 162 (406)
Q Consensus 112 ~a~~~s~~~~~~~~pyG~~R~E~-l~~l~~~~~l~~~~~~i~~eai~~li~~ 162 (406)
++.|++..+......||-.++|+ +..++..++++++.+++++--+.+++..
T Consensus 17 ~~~~~~~~~Gyv~i~~~~~~ie~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 68 (409)
T TIGR00540 17 AGPMIAGHQGYVLIETANRIIEMSITGLAIFFIIALAIIFAFEWGLRRFFRL 68 (409)
T ss_pred HHHHHcCCCCeEEEEECCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35677777777778888889997 5555555555555555666666666653
No 97
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=23.06 E-value=1.4e+02 Score=23.64 Aligned_cols=32 Identities=9% Similarity=0.240 Sum_probs=27.7
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHh
Q 045866 358 VGKVLLACHVKIKPEADADMVLENVIDYIKRE 389 (406)
Q Consensus 358 ~g~~~~~v~V~v~~~~~~~~i~~~v~~~l~~~ 389 (406)
++++.+.+.+.+.|..+.+++.+++++.+++.
T Consensus 76 p~~a~~~~~~R~~p~~~~~~i~~~i~~~~~~~ 107 (111)
T PF07687_consen 76 PDEATLTVDIRYPPGEDLEEIKAEIEAAVEKI 107 (111)
T ss_dssp SSEEEEEEEEEESTCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEECCCcchHHHHHHHHHHHHHHh
Confidence 57788999999999999999999999988753
No 98
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=22.86 E-value=6.5e+02 Score=25.76 Aligned_cols=27 Identities=7% Similarity=0.081 Sum_probs=13.9
Q ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045866 90 SLAVLTDAAHLLSDVAAFAISLFSIWA 116 (406)
Q Consensus 90 S~aLlaDa~h~l~D~~s~~i~l~a~~~ 116 (406)
+..+..+++....-.+..++.++.+.+
T Consensus 239 gp~lg~~~i~~~~~a~~ig~ilV~l~~ 265 (397)
T TIGR01129 239 GPSLGADSIEAGIKAGLIGLVLVLVFM 265 (397)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554444433
No 99
>COG0390 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=22.84 E-value=6.9e+02 Score=24.02 Aligned_cols=80 Identities=14% Similarity=0.175 Sum_probs=36.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHH----------------
Q 045866 259 NINVQGAYLHVLGDSIQSVGVMIGGAIIWYKPEWKIIDLICTLAFSAIVLGTTFRMLRNILEIL---------------- 322 (406)
Q Consensus 259 s~~l~a~~~h~~~D~l~sv~vli~~~l~~~~~~~~~~D~i~sliis~~il~~~~~l~r~~~~~L---------------- 322 (406)
+++....++....+...|.++-...++. +.-.|.+|--.+-++.+|+.++.....-+.+.|
T Consensus 86 ~k~~~~~f~~~flai~~s~~~~~~vlv~---~~~~~~~p~yvIPi~GMIlGNtm~~~~L~~~~l~~~i~~~~~eie~~Ls 162 (256)
T COG0390 86 SKKILKLFILVFLAIFVSTLVYLLVLVL---RGRIWFEPRYVIPIAGMILGNTMVGVSLAYERLVSEIISEKDEIEAKLS 162 (256)
T ss_pred hhhhhhhHHHHHHHHHHHHhHhheeeEe---ccCCCCCCceeeehhhhhhcchhhhhhhHHHHHHHHHhccHHHHHHHHh
Confidence 4444445555555555443322222221 233455555555555556555443332222222
Q ss_pred HccCCCcccHHHHHHHHhc
Q 045866 323 MESTPREVDATRLEKGLCE 341 (406)
Q Consensus 323 l~~~p~~~~~~~i~~~l~~ 341 (406)
++++|.+-...-+|+.++.
T Consensus 163 LGaTp~~A~~~~~r~Air~ 181 (256)
T COG0390 163 LGATPKEASRPYIRSAIRA 181 (256)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 3556655554555555543
No 100
>PRK10599 calcium/sodium:proton antiporter; Provisional
Probab=22.77 E-value=8.2e+02 Score=24.87 Aligned_cols=105 Identities=16% Similarity=0.179 Sum_probs=57.3
Q ss_pred HHHHHHHHHH--HHHHhhh---CcHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 045866 72 VLCIIFMGVE--VVGGMKA---NSLAVLTDAAHLLSDVAAFAISLFSIWASGWEATPRQSYGFFRIEILGALVSIQLIWL 146 (406)
Q Consensus 72 ~~~~~~~~~e--~v~g~~s---~S~aLlaDa~h~l~D~~s~~i~l~a~~~s~~~~~~~~pyG~~R~E~l~~l~~~~~l~~ 146 (406)
++.+...++| ++..++. ++..|.-|.+.+..-+...++.-+++...+++- .+++|--. -.. -..+.++.+
T Consensus 76 iLtlsv~~iEv~li~~~Ml~g~~~~tlaRDtvfa~vMi~~nGilGl~ll~GGlr~-~eQ~fn~~---ga~-~~~~~ll~L 150 (366)
T PRK10599 76 ILSLSVVILEVSLISALMATGDAAPTLMRDTLYSIIMIVTGGLVGFSLLLGGRKF-ATQYMNLF---GIK-QYLIALFPL 150 (366)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhccHHHHHHHHhcccc-CeeecCHH---hHH-HHHHHHHHH
Confidence 3333344444 3444454 789999999999999999988888888887654 23444331 111 222333333
Q ss_pred HHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHH
Q 045866 147 LAGILVYEAIVRLIHENGQVQGFLMFVVSAIGLAVNIAM 185 (406)
Q Consensus 147 ~~~~i~~eai~~li~~~~~~~~~~~~~v~~~~l~vn~~~ 185 (406)
..+.++.=++ + +.+.........++++.+++....
T Consensus 151 a~l~LvlP~~---~-~~~~~s~~~s~~~avv~lvlY~~f 185 (366)
T PRK10599 151 AIIVLVFPMA---L-PGANFSTGQALLVALISAAMYGVF 185 (366)
T ss_pred HHHHHhcCcc---c-CCCccchhHHHHHHHHHHHHHHHH
Confidence 3444433333 1 122222334455666666665543
No 101
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=22.53 E-value=1.5e+02 Score=34.23 Aligned_cols=89 Identities=16% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH---------------ccCCCcccHHHHHHHHhcCcCccccceEEEEEeeCCeE
Q 045866 297 LICTLAFSAIVLGTTFRMLRNILEILM---------------ESTPREVDATRLEKGLCEMEEVVAIHELHIWAITVGKV 361 (406)
Q Consensus 297 ~i~sliis~~il~~~~~l~r~~~~~Ll---------------~~~p~~~~~~~i~~~l~~~~~V~~v~~l~~w~~~~g~~ 361 (406)
|+.++++.++++..|+-.+.+-=..++ +.+|++.+.+..+..=.++.++.++++++... ..|.
T Consensus 9 ~~~~~~l~~~~~~~G~~~~~~l~~~~~P~~~~p~i~V~~~~pgas~~~ve~~vt~plE~~l~~v~gv~~i~S~s-~~g~- 86 (1021)
T PF00873_consen 9 PVAVLLLFLALILFGIFSFFSLPVELFPDIDFPQISVTTSYPGASPEEVEQLVTKPLEEALSSVEGVKEIRSTS-REGS- 86 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSBESSSS-SSSEEEEEEE-TTS-HHHHHHHTHHHHHHTHCSSTTEEEEEEEE-TTSE-
T ss_pred hHHHHHHHHHHHHHHHHHhhcCChhhCCCCCccceEEEEecCcCCHHHHHHHHHHHHHHHHcCCCCeEEEEEEe-cCCc-
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 045866 362 LLACHVKIKPEADADMVLENVIDYIKR 388 (406)
Q Consensus 362 ~~~v~V~v~~~~~~~~i~~~v~~~l~~ 388 (406)
..+.|+++.+.+.++...++++++.+
T Consensus 87 -s~i~v~f~~~~d~~~a~~~v~~~i~~ 112 (1021)
T PF00873_consen 87 -SSITVEFDDGTDIDEALQEVREKIDQ 112 (1021)
T ss_dssp -EEEEEEESTTS-HHHHHHHHHHHHHH
T ss_pred -EEEEEEeccccCHHHHHHHHHHHHHh
No 102
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=22.53 E-value=8.1e+02 Score=26.55 Aligned_cols=75 Identities=17% Similarity=0.064 Sum_probs=43.0
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHhhhCcHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHH
Q 045866 64 MLKLLIVVVL-CIIFMGVEVVGGMKANSLAVLTDAAHLLSDVAAFAISLFSIWASGWEATPRQSYGFFRIEILGALVSIQ 142 (406)
Q Consensus 64 ~r~l~i~~~~-~~~~~~~e~v~g~~s~S~aLlaDa~h~l~D~~s~~i~l~a~~~s~~~~~~~~pyG~~R~E~l~~l~~~~ 142 (406)
.|..|..+++ |+++.=+.=-+-+.+|.-+....-+-++-|- ..+..+ -+-+++..+.++
T Consensus 248 I~~AWf~vv~P~L~LNY~GQGA~vL~~p~a~~npFF~~~P~~----aliP~v----------------iLAT~ATVIASQ 307 (627)
T COG3158 248 IRVAWFFVVLPCLLLNYFGQGALLLSNPEAIGNPFFLLAPDW----ALIPLV----------------ILATAATVIASQ 307 (627)
T ss_pred HHHHHHHHHHHHHHHHHccccceeccCcccccCcHHHhChhh----HHHHHH----------------HHHHHHHHHHHH
Confidence 3666777766 6666444333444555555444422222222 111111 123567778888
Q ss_pred HHHHHHHHHHHHHHHH
Q 045866 143 LIWLLAGILVYEAIVR 158 (406)
Q Consensus 143 ~l~~~~~~i~~eai~~ 158 (406)
.++..++.+..+|++-
T Consensus 308 AvISGaFSLtrQAi~L 323 (627)
T COG3158 308 AVISGAFSLTRQAIRL 323 (627)
T ss_pred HHHhhHhHHHHHHHHh
Confidence 8999999999999974
No 103
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=22.42 E-value=84 Score=22.08 Aligned_cols=17 Identities=6% Similarity=0.145 Sum_probs=12.9
Q ss_pred hhhhHHHHHHHHHHHHH
Q 045866 293 KIIDLICTLAFSAIVLG 309 (406)
Q Consensus 293 ~~~D~i~sliis~~il~ 309 (406)
.++||+.++++++.-.+
T Consensus 5 r~lDP~~av~iG~~ayy 21 (47)
T PF11654_consen 5 RFLDPLFAVFIGTSAYY 21 (47)
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 47999999888766444
No 104
>TIGR00473 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase. This enzyme, CDP-diacylglycerol--serine O-phosphatidyltransferase, is involved in phospholipid biosynthesis catalyzing the reaction CDP-diacylglycerol + L-serine = CMP + L-1-phosphatidylserine. Members of this family do not bear any significant sequence similarity to the corresponding E.coli protein.
Probab=21.99 E-value=2.4e+02 Score=24.74 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=39.4
Q ss_pred ccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 045866 253 KQKKQRNINVQGAYLHVLGDSIQSVGVMIGGAIIWYKPEWKIIDLICTLAFSAIVLGTTFRMLRNIL 319 (406)
Q Consensus 253 ~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~l~~~~~~~~~~D~i~sliis~~il~~~~~l~r~~~ 319 (406)
..|+.+...-.+..++.++|.+ +.++.-+.++..+. ++ .+...++..++++..++++.|-+.
T Consensus 40 vAR~~~~~s~~G~~lDsl~D~v-sfgvaPa~l~~~~~-~~---~~~~~~~~~~~~l~~a~RLArFN~ 101 (151)
T TIGR00473 40 VARKTNRVSDFGKELDSLADVV-SFGVAPAALAYSIG-NF---QTIGILVAALFFLCGILRLARFNV 101 (151)
T ss_pred HHHHcCCCChHHHHHHHHHHHH-HHHHHHHHHHHHHh-cc---chHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555555677899999999988 45555554443321 22 222334445677888999998775
No 105
>PRK09304 arginine exporter protein; Provisional
Probab=21.79 E-value=3.8e+02 Score=24.40 Aligned_cols=56 Identities=18% Similarity=0.180 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHhHHHHHHHH
Q 045866 261 NVQGAYLHVLGDSIQSVGVMIGGAIIWYKPEWKIIDLICTLAFSAIVLGTTFRMLRNI 318 (406)
Q Consensus 261 ~l~a~~~h~~~D~l~sv~vli~~~l~~~~~~~~~~D~i~sliis~~il~~~~~l~r~~ 318 (406)
.+....-...+|.+....+..+...... .++++-.+..++=++|+++.+++++|+.
T Consensus 36 ~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~--~~p~~~~~l~~~Ga~YLlyLg~~~~rs~ 91 (207)
T PRK09304 36 HLMIALLCALSDLVLICAGIFGGSALLM--QSPWLLALVTWGGVAFLLWYGFGAFKTA 91 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555678888888777766554332 4778999999999999999999999975
No 106
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=20.96 E-value=3.2e+02 Score=24.50 Aligned_cols=9 Identities=33% Similarity=0.482 Sum_probs=4.9
Q ss_pred HHHHhhccc
Q 045866 155 AIVRLIHEN 163 (406)
Q Consensus 155 ai~~li~~~ 163 (406)
-+...++|.
T Consensus 22 ~i~~YI~P~ 30 (182)
T PF09323_consen 22 KILLYIHPR 30 (182)
T ss_pred cHHHHhCcc
Confidence 355666653
No 107
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=20.72 E-value=47 Score=23.99 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=23.5
Q ss_pred HHccCCCcccHHHHHHHHhcCcCccccce
Q 045866 322 LMESTPREVDATRLEKGLCEMEEVVAIHE 350 (406)
Q Consensus 322 Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~ 350 (406)
|.+..|.....+++.+.+..++||..|.+
T Consensus 30 L~G~v~s~~~~~~a~~~a~~v~gv~~V~n 58 (64)
T PF04972_consen 30 LSGEVPSQEQRDAAERLARSVAGVREVVN 58 (64)
T ss_dssp EEEEESSCHHHHHHHHHHHCC-STSEEEE
T ss_pred EEeeCcHHHHHHhHHhhhccCCCcCEEEE
Confidence 56777888888999999999999988775
No 108
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=20.51 E-value=9.5e+02 Score=24.76 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHccCCCcc
Q 045866 271 GDSIQSVGVMIGGAIIWYKPEWKIIDLICTLAFSAIVLGTTFRMLRNILEILMESTPREV 330 (406)
Q Consensus 271 ~D~l~sv~vli~~~l~~~~~~~~~~D~i~sliis~~il~~~~~l~r~~~~~Ll~~~p~~~ 330 (406)
.....+.+.+....+.++.++|.|+=-++++.-.+.+++ +-+..|+-+-|+.+.-.++
T Consensus 212 ~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~--~~l~~Es~rwl~~~g~~~~ 269 (521)
T KOG0255|consen 212 GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLL--WFLPPESPRWLLSKGRIDE 269 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHccCcChHHHHHcCchHH
Confidence 444555666666666666678998887777766666666 4555577777777664433
No 109
>TIGR00820 zip ZIP zinc/iron transport family. transport has not been characterized, but these systems probably function as secondary carriers.
Probab=20.45 E-value=3.3e+02 Score=27.03 Aligned_cols=154 Identities=16% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------ccccchhHHHHHH
Q 045866 104 VAAFAISLFSIWASGWEATPRQSYGFFRIEILGALVSIQLIWLLAGILVYEAIVRLIHE--------NGQVQGFLMFVVS 175 (406)
Q Consensus 104 ~~s~~i~l~a~~~s~~~~~~~~pyG~~R~E~l~~l~~~~~l~~~~~~i~~eai~~li~~--------~~~~~~~~~~~v~ 175 (406)
+.+.+.+++=+...+.+..+..++.+...+. |..+++|....+-++-++.+.+-++ ..+.....+++-.
T Consensus 28 ~~slig~~lP~i~~~~~~~~~~~~~~~~~k~---FagGVfLATafvHLLp~a~e~l~~~cl~~~~~~~yP~~~~i~~~g~ 104 (324)
T TIGR00820 28 LASVIGVMFPLIGKNVPSLRPEGNFFFVAKA---FAAGVILATGFMHVLPEAFEMLSSPCLESTPWGKFPFAGFIAMISA 104 (324)
T ss_pred HHHHHHHhhHHHhhhccccCCCcchhHHHHH---hccceeeeeeeeeeccHHHHhhcCcccCCCCCCcCCHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCccCCcccccccccCCCCCCCcccc
Q 045866 176 AIGLAVNIAMAFFLGHDHGHGHNHGHDHSHGHDAKHHQHHHGGDFKHRDEHLHSHETDRTEPLLSTCSEEHKPKDGPKQK 255 (406)
Q Consensus 176 ~~~l~vn~~~~~~~~~~~~h~~~~~h~~~h~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 255 (406)
++.+++..+...+..+..++++ |.+.+.++. .....+..++++++++.+.+.++.+......+ .+
T Consensus 105 ~l~~~iE~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 169 (324)
T TIGR00820 105 ILTLLVDLFATSYYERKHGKGD-HGSKEIKVG-DGEEGTAGGTKHGHEYYEDHVHTNSEVVQLLR-------------QR 169 (324)
T ss_pred HHHHHHHHHHHHHHhccccCCC-CCccccccc-ccccCCCCCCCCCccccccccccccchhhHHH-------------HH
Q ss_pred cccCchhhHHHHHHHHHHHH
Q 045866 256 KQRNINVQGAYLHVLGDSIQ 275 (406)
Q Consensus 256 ~~~s~~l~a~~~h~~~D~l~ 275 (406)
-.--...-+...|...+-+.
T Consensus 170 ~~~~~l~~gl~~Hs~~eGla 189 (324)
T TIGR00820 170 VVAQVLELGIIVHSVVIGLS 189 (324)
T ss_pred HHHHHHHHHHHhcchhhhhh
No 110
>PF07069 PRRSV_2b: Porcine reproductive and respiratory syndrome virus 2b ; InterPro: IPR009775 This family consists of several Porcine reproductive and respiratory syndrome virus (PRRSV) ORF2b proteins. The function of this family is unknown however it is known that large amounts of 2b protein are present in the virion and it is thought that this protein may be an integral component of the virion [].
Probab=20.18 E-value=3.7e+02 Score=19.92 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 045866 99 HLLSDVAAFAISLFSIWASGW 119 (406)
Q Consensus 99 h~l~D~~s~~i~l~a~~~s~~ 119 (406)
-++.|++.++..|++...++|
T Consensus 24 vsivdiiiflailfgftiagw 44 (73)
T PF07069_consen 24 VSIVDIIIFLAILFGFTIAGW 44 (73)
T ss_pred HHHHHHHHHHHHHHhhHHHHH
Confidence 455666666665555544443
Done!