Query 045871
Match_columns 541
No_of_seqs 319 out of 2817
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 06:22:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 2E-35 4.3E-40 284.8 13.6 354 126-515 73-453 (483)
2 KOG2120 SCF ubiquitin ligase, 99.9 4.4E-25 9.5E-30 204.6 11.0 285 126-492 99-391 (419)
3 KOG4341 F-box protein containi 99.9 8.1E-22 1.8E-26 191.0 9.0 284 175-471 149-458 (483)
4 cd00116 LRR_RI Leucine-rich re 99.6 5.2E-14 1.1E-18 141.5 21.9 67 440-507 217-296 (319)
5 KOG1947 Leucine rich repeat pr 99.6 7.7E-15 1.7E-19 156.2 11.6 282 206-512 151-451 (482)
6 cd00116 LRR_RI Leucine-rich re 99.5 2E-12 4.3E-17 130.0 24.6 269 182-498 15-317 (319)
7 PLN00113 leucine-rich repeat r 99.5 8.9E-14 1.9E-18 160.7 14.2 123 244-379 116-246 (968)
8 PLN00113 leucine-rich repeat r 99.5 1.7E-13 3.8E-18 158.3 14.7 196 243-454 161-366 (968)
9 KOG2120 SCF ubiquitin ligase, 99.5 1E-13 2.2E-18 129.4 7.3 202 292-498 160-373 (419)
10 KOG1947 Leucine rich repeat pr 99.4 1.7E-12 3.7E-17 138.1 13.1 272 187-483 158-445 (482)
11 KOG4194 Membrane glycoprotein 99.3 4.5E-13 9.8E-18 135.4 3.5 153 342-499 268-427 (873)
12 KOG1909 Ran GTPase-activating 99.3 4.1E-11 8.9E-16 114.8 12.4 201 181-398 21-241 (382)
13 KOG1909 Ran GTPase-activating 99.2 1.1E-10 2.4E-15 111.9 13.8 262 207-510 21-321 (382)
14 KOG4194 Membrane glycoprotein 99.2 6.6E-13 1.4E-17 134.3 -2.1 278 216-518 173-473 (873)
15 PLN03210 Resistant to P. syrin 99.2 1.1E-10 2.4E-15 136.1 11.7 238 243-503 631-908 (1153)
16 PLN03210 Resistant to P. syrin 99.1 2.3E-10 5E-15 133.4 11.1 61 443-503 824-884 (1153)
17 KOG3207 Beta-tubulin folding c 98.9 8.5E-10 1.9E-14 108.7 3.9 201 289-497 119-335 (505)
18 KOG3207 Beta-tubulin folding c 98.8 2.3E-09 4.9E-14 105.8 1.5 167 182-379 110-281 (505)
19 PF12937 F-box-like: F-box-lik 98.7 1.1E-08 2.4E-13 71.0 2.2 42 126-167 2-45 (47)
20 KOG0444 Cytoskeletal regulator 98.6 9.7E-09 2.1E-13 105.3 -0.2 78 315-401 220-297 (1255)
21 KOG0444 Cytoskeletal regulator 98.5 5E-09 1.1E-13 107.3 -4.1 279 191-497 8-300 (1255)
22 KOG3665 ZYG-1-like serine/thre 98.4 8.3E-07 1.8E-11 96.8 9.1 157 191-378 123-284 (699)
23 COG5238 RNA1 Ran GTPase-activa 98.4 6E-06 1.3E-10 77.1 13.0 184 189-390 29-234 (388)
24 COG5238 RNA1 Ran GTPase-activa 98.3 6.9E-06 1.5E-10 76.8 12.5 208 278-511 18-264 (388)
25 PRK15387 E3 ubiquitin-protein 98.3 7E-07 1.5E-11 98.0 6.4 82 421-509 384-465 (788)
26 smart00256 FBOX A Receptor for 98.3 1.7E-06 3.7E-11 57.9 4.8 37 128-164 1-39 (41)
27 KOG0618 Serine/threonine phosp 98.2 3.1E-07 6.7E-12 98.7 1.5 124 344-499 360-487 (1081)
28 KOG0618 Serine/threonine phosp 98.2 3.8E-07 8.2E-12 98.0 0.9 77 318-401 360-436 (1081)
29 KOG3864 Uncharacterized conser 98.2 1.9E-06 4.1E-11 77.2 4.8 106 292-401 102-210 (221)
30 KOG3665 ZYG-1-like serine/thre 98.1 1.3E-05 2.8E-10 87.7 10.8 141 162-312 120-271 (699)
31 PF00646 F-box: F-box domain; 98.1 2.9E-06 6.3E-11 59.1 3.1 39 127-165 5-45 (48)
32 PF14580 LRR_9: Leucine-rich r 98.0 4.7E-06 1E-10 75.1 3.6 37 463-499 111-151 (175)
33 KOG2982 Uncharacterized conser 97.9 1.1E-05 2.4E-10 76.4 4.4 132 258-401 69-205 (418)
34 PF14580 LRR_9: Leucine-rich r 97.9 3E-06 6.4E-11 76.3 0.6 128 258-401 17-146 (175)
35 KOG1259 Nischarin, modulator o 97.9 1.5E-05 3.3E-10 75.5 4.4 79 289-378 282-361 (490)
36 PRK15387 E3 ubiquitin-protein 97.8 1.5E-05 3.3E-10 87.6 4.8 195 259-502 241-435 (788)
37 KOG3864 Uncharacterized conser 97.8 2.3E-05 4.9E-10 70.4 3.9 84 345-454 103-186 (221)
38 KOG2982 Uncharacterized conser 97.8 3.1E-05 6.6E-10 73.5 4.8 106 292-401 46-152 (418)
39 PRK15370 E3 ubiquitin-protein 97.7 0.00011 2.4E-09 81.3 8.8 189 292-510 242-436 (754)
40 KOG1259 Nischarin, modulator o 97.5 6E-05 1.3E-09 71.6 2.9 55 315-378 282-338 (490)
41 KOG4237 Extracellular matrix p 97.3 0.00012 2.6E-09 72.2 1.8 224 260-502 67-335 (498)
42 KOG4658 Apoptotic ATPase [Sign 97.2 0.00027 5.9E-09 79.5 4.3 63 440-502 713-784 (889)
43 KOG0472 Leucine-rich repeat pr 97.2 7.1E-05 1.5E-09 73.8 -0.9 38 440-477 501-540 (565)
44 KOG4237 Extracellular matrix p 97.1 9.7E-05 2.1E-09 72.8 -0.1 89 391-480 270-361 (498)
45 smart00367 LRR_CC Leucine-rich 97.1 0.00054 1.2E-08 40.6 2.9 25 487-511 1-25 (26)
46 KOG1859 Leucine-rich repeat pr 97.1 9.2E-05 2E-09 78.2 -1.1 102 259-378 186-288 (1096)
47 KOG4308 LRR-containing protein 97.1 0.00026 5.7E-09 74.2 2.1 215 262-502 89-332 (478)
48 KOG4308 LRR-containing protein 96.7 0.00062 1.3E-08 71.5 1.4 192 180-392 105-312 (478)
49 PRK15370 E3 ubiquitin-protein 96.6 0.015 3.2E-07 64.8 11.5 199 260-499 199-399 (754)
50 smart00367 LRR_CC Leucine-rich 96.3 0.0039 8.6E-08 36.8 2.6 21 370-390 3-23 (26)
51 PRK15386 type III secretion pr 96.2 0.009 2E-07 60.8 6.1 71 289-378 50-121 (426)
52 KOG2997 F-box protein FBX9 [Ge 96.2 0.0047 1E-07 59.2 3.8 42 126-167 108-156 (366)
53 KOG2739 Leucine-rich acidic nu 96.2 0.0013 2.8E-08 61.7 0.1 106 290-401 42-149 (260)
54 PF13855 LRR_8: Leucine rich r 96.2 0.00043 9.3E-09 50.8 -2.7 15 289-303 23-37 (61)
55 KOG0472 Leucine-rich repeat pr 96.0 0.00017 3.8E-09 71.2 -6.7 59 439-499 247-308 (565)
56 PLN03150 hypothetical protein; 95.9 0.015 3.3E-07 63.8 6.8 81 293-379 420-500 (623)
57 PF13855 LRR_8: Leucine rich r 95.9 0.0077 1.7E-07 44.0 3.1 61 216-303 1-61 (61)
58 PF13516 LRR_6: Leucine Rich r 95.8 0.0054 1.2E-07 35.4 1.7 23 342-364 1-23 (24)
59 KOG4658 Apoptotic ATPase [Sign 95.8 0.011 2.3E-07 67.0 5.2 107 289-405 543-652 (889)
60 KOG1859 Leucine-rich repeat pr 95.3 0.011 2.4E-07 63.0 2.9 184 283-497 76-263 (1096)
61 KOG2123 Uncharacterized conser 95.2 0.0061 1.3E-07 57.8 0.5 113 190-337 19-134 (388)
62 KOG2739 Leucine-rich acidic nu 95.2 0.01 2.2E-07 55.9 1.9 16 289-304 89-104 (260)
63 KOG0617 Ras suppressor protein 95.1 0.00033 7.2E-09 61.3 -7.5 152 256-455 29-184 (264)
64 KOG0281 Beta-TrCP (transducin 95.1 0.026 5.7E-07 54.7 4.4 40 127-166 77-122 (499)
65 KOG2123 Uncharacterized conser 95.1 0.021 4.5E-07 54.3 3.5 35 318-356 20-54 (388)
66 PF12799 LRR_4: Leucine Rich r 94.8 0.03 6.5E-07 37.8 3.0 15 342-356 23-37 (44)
67 PRK15386 type III secretion pr 94.8 0.047 1E-06 55.8 5.6 53 444-498 132-187 (426)
68 KOG0617 Ras suppressor protein 94.8 0.00068 1.5E-08 59.4 -6.6 146 315-476 31-184 (264)
69 PLN03150 hypothetical protein; 94.6 0.037 8.1E-07 60.8 4.7 65 289-357 440-504 (623)
70 PLN03215 ascorbic acid mannose 94.4 0.039 8.5E-07 55.6 3.8 39 118-161 2-41 (373)
71 smart00368 LRR_RI Leucine rich 93.8 0.084 1.8E-06 31.7 3.1 24 343-366 2-25 (28)
72 COG4886 Leucine-rich repeat (L 93.8 0.053 1.1E-06 56.1 3.6 102 259-378 115-218 (394)
73 KOG1644 U2-associated snRNP A' 93.3 0.09 2E-06 47.8 3.7 87 258-353 62-150 (233)
74 PF12799 LRR_4: Leucine Rich r 92.9 0.16 3.4E-06 34.3 3.6 34 465-499 1-35 (44)
75 KOG1644 U2-associated snRNP A' 92.4 0.069 1.5E-06 48.5 1.6 105 260-379 42-150 (233)
76 PF13516 LRR_6: Leucine Rich r 90.4 0.29 6.3E-06 28.0 2.4 21 291-311 2-22 (24)
77 COG4886 Leucine-rich repeat (L 87.5 0.67 1.5E-05 47.9 4.5 36 289-327 161-196 (394)
78 KOG4579 Leucine-rich repeat (L 85.2 0.41 8.9E-06 40.9 1.1 33 344-378 28-62 (177)
79 KOG0274 Cdc4 and related F-box 84.0 1.6 3.4E-05 46.9 5.2 42 126-167 109-153 (537)
80 KOG0531 Protein phosphatase 1, 80.2 0.64 1.4E-05 48.5 0.5 85 258-357 116-200 (414)
81 KOG0531 Protein phosphatase 1, 79.7 0.6 1.3E-05 48.7 0.1 103 258-379 93-196 (414)
82 PF13504 LRR_7: Leucine rich r 78.8 1.4 3.1E-05 22.9 1.3 12 344-355 2-13 (17)
83 KOG4579 Leucine-rich repeat (L 78.0 1.1 2.4E-05 38.4 1.2 36 289-327 75-110 (177)
84 PF13013 F-box-like_2: F-box-l 76.5 7.3 0.00016 32.0 5.5 39 126-164 23-61 (109)
85 smart00368 LRR_RI Leucine rich 76.3 3.2 7E-05 24.7 2.6 21 291-311 2-22 (28)
86 KOG3763 mRNA export factor TAP 72.1 6.6 0.00014 41.4 5.2 13 289-301 242-254 (585)
87 KOG3926 F-box proteins [Amino 68.5 9.3 0.0002 36.4 4.9 47 126-172 203-252 (332)
88 COG5222 Uncharacterized conser 68.0 2.6 5.5E-05 40.3 1.2 15 31-47 174-188 (427)
89 PF00560 LRR_1: Leucine Rich R 64.7 2.9 6.3E-05 23.3 0.5 13 344-356 1-13 (22)
90 PF13696 zf-CCHC_2: Zinc knuck 58.3 6.2 0.00013 24.4 1.2 18 29-48 4-21 (32)
91 KOG3763 mRNA export factor TAP 56.4 23 0.00049 37.6 5.6 34 290-323 269-307 (585)
92 PHA00616 hypothetical protein 49.8 4.3 9.3E-05 27.2 -0.5 13 33-45 1-13 (44)
93 smart00370 LRR Leucine-rich re 46.0 16 0.00036 20.9 1.7 15 343-357 2-16 (26)
94 smart00369 LRR_TYP Leucine-ric 46.0 16 0.00036 20.9 1.7 15 343-357 2-16 (26)
95 smart00365 LRR_SD22 Leucine-ri 45.0 18 0.0004 21.2 1.7 14 343-356 2-15 (26)
96 KOG3735 Tropomodulin and leiom 44.0 70 0.0015 31.8 6.5 91 204-312 186-276 (353)
97 KOG0260 RNA polymerase II, lar 42.4 1.9E+02 0.004 34.0 10.1 11 9-19 1457-1467(1605)
98 COG1244 Predicted Fe-S oxidore 41.8 16 0.00034 36.0 1.8 24 18-41 284-307 (358)
99 KOG3735 Tropomodulin and leiom 39.9 38 0.00082 33.6 4.0 102 278-380 185-294 (353)
100 PF07723 LRR_2: Leucine Rich R 37.5 26 0.00057 20.5 1.6 11 293-303 2-12 (26)
101 PF05022 SRP40_C: SRP40, C-ter 35.4 18 0.0004 27.2 0.9 13 25-37 49-61 (72)
102 PF04060 FeS: Putative Fe-S cl 33.3 19 0.00042 22.8 0.6 11 32-42 3-13 (35)
103 COG0199 RpsN Ribosomal protein 33.0 26 0.00057 25.4 1.3 21 23-43 10-31 (61)
104 KOG1924 RhoA GTPase effector D 32.0 1.8E+02 0.004 32.3 7.8 7 161-167 643-649 (1102)
105 TIGR01210 conserved hypothetic 28.6 28 0.00061 34.7 1.2 19 23-41 252-270 (313)
106 KOG0532 Leucine-rich repeat (L 28.4 22 0.00047 38.0 0.4 107 258-379 164-270 (722)
107 PF09372 PRANC: PRANC domain; 27.7 55 0.0012 26.1 2.6 24 119-147 71-94 (97)
108 PF00098 zf-CCHC: Zinc knuckle 27.6 43 0.00094 17.7 1.3 12 35-48 2-13 (18)
109 KOG2500 Uncharacterized conser 25.0 3.2E+02 0.0069 25.5 7.0 18 28-45 166-183 (253)
110 PF12088 DUF3565: Protein of u 24.0 29 0.00063 24.8 0.2 40 4-43 19-58 (61)
111 smart00659 RPOLCX RNA polymera 23.9 35 0.00076 22.9 0.6 12 33-44 2-13 (44)
112 COG4338 Uncharacterized protei 23.5 39 0.00083 22.9 0.7 21 24-44 3-23 (54)
113 PF03604 DNA_RNApol_7kD: DNA d 22.4 38 0.00082 21.0 0.5 10 34-43 1-10 (32)
114 PHA00687 hypothetical protein 20.7 17 0.00036 24.1 -1.4 17 525-541 38-56 (56)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=2e-35 Score=284.81 Aligned_cols=354 Identities=24% Similarity=0.340 Sum_probs=271.4
Q ss_pred CCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhh--HHHHhhcccccccCCCCcchhhHHHHHhhCC-CccEEEecCCCC
Q 045871 126 GGLPAAALWEVLRRLPPPGLLAAAQVCKGWRETS--RRLWRAAEELRLRVPPRAQVGFVGSVLQKCS-ALVRLSLTMESD 202 (541)
Q Consensus 126 ~~LP~eil~~If~~L~~~~l~~~~~Vck~W~~~~--~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~~-~L~~L~L~~~~~ 202 (541)
..||+|++..||++|+.+.+++++++|+.|+..+ +..|++++++.++ .++...++..++++|. .|++|.++||..
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~--rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~ 150 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQ--RDVDGGVVENMISRCGGFLKELSLRGCRA 150 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcch--hcCCCcceehHhhhhcccccccccccccc
Confidence 5679999999999999999999999999999999 9999999999887 4566788999999998 599999999999
Q ss_pred CChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC------------ccCCCCcceEEeccc
Q 045871 203 VDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG------------IFNCPNMREISLEFS 270 (541)
Q Consensus 203 ~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~------------~~~~~~L~~L~L~~~ 270 (541)
+.+..+..+..+|||+++|+|.+|. .+|+..+..+.+.|++|++|.+.+ ...|++|++|++++|
T Consensus 151 v~~sslrt~~~~CpnIehL~l~gc~----~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc 226 (483)
T KOG4341|consen 151 VGDSSLRTFASNCPNIEHLALYGCK----KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWC 226 (483)
T ss_pred CCcchhhHHhhhCCchhhhhhhcce----eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccC
Confidence 9999999999999999999999997 799999999988888887777765 235677777777777
Q ss_pred CCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEe
Q 045871 271 RQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDL 350 (541)
Q Consensus 271 ~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L 350 (541)
..+.+.. ++.+.+++..++.+.+.+|.-.+...+..+..+++.+.++++..|..+||+++..+..+|..|+.|+.
T Consensus 227 ~qi~~~g-----v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~ 301 (483)
T KOG4341|consen 227 PQISGNG-----VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCY 301 (483)
T ss_pred chhhcCc-----chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcc
Confidence 6666532 33455566666666666664333322333335666666666667777777777777777777777777
Q ss_pred cCC-CCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCcccccceeecccc
Q 045871 351 SGS-SISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDETCDFELQKAFN 429 (541)
Q Consensus 351 ~~~-~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c 429 (541)
+++ .++|..+..+...++ +|+.|-+..|..+++.++..++.+|+.|+.++ +..|
T Consensus 302 s~~t~~~d~~l~aLg~~~~-~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~------------------------~e~~ 356 (483)
T KOG4341|consen 302 SSCTDITDEVLWALGQHCH-NLQVLELSGCQQFSDRGFTMLGRNCPHLERLD------------------------LEEC 356 (483)
T ss_pred cCCCCCchHHHHHHhcCCC-ceEEEeccccchhhhhhhhhhhcCChhhhhhc------------------------cccc
Confidence 776 677777777777763 67777777777777777777777777776665 3334
Q ss_pred hhhcH-HHHHHHHhCCCccEEEcCCCccH-----HHHH---hcCCCCCeeeccCCCCCCHhHH--HhcCCCCcEecccCC
Q 045871 430 NKLHL-MYQKLIIKHCCLKKLSLWGCSGL-----DALC---LNCPELNDLNLNSCRNLRPETL--LLHCPRLESVHASGC 498 (541)
Q Consensus 430 ~~l~~-~~~~~l~~~~~L~~L~L~~~~~l-----~~l~---~~~~~L~~L~L~~c~~~~d~~l--~~~~p~L~~L~l~~C 498 (541)
..+.+ .+..+..+|+.|++|.|+.|+.+ ..+. .....|+.|.|++|+.++|+.+ ...|++|+.+++.+|
T Consensus 357 ~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 357 GLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 44443 35556677899999999988633 2222 2356899999999999999544 578999999999999
Q ss_pred ccccHHHHHHhHhcCcc
Q 045871 499 QELLVDTIHSQVKNNPS 515 (541)
Q Consensus 499 ~~it~~~i~~~~~~~~~ 515 (541)
.+++.++|+.++-.-+.
T Consensus 437 q~vtk~~i~~~~~~lp~ 453 (483)
T KOG4341|consen 437 QDVTKEAISRFATHLPN 453 (483)
T ss_pred hhhhhhhhHHHHhhCcc
Confidence 99999999998866544
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.4e-25 Score=204.55 Aligned_cols=285 Identities=21% Similarity=0.257 Sum_probs=207.8
Q ss_pred CCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhh--HHHHhhcccccccCCCCcchhhHHHHHhhCCCccEEEecCCCCC
Q 045871 126 GGLPAAALWEVLRRLPPPGLLAAAQVCKGWRETS--RRLWRAAEELRLRVPPRAQVGFVGSVLQKCSALVRLSLTMESDV 203 (541)
Q Consensus 126 ~~LP~eil~~If~~L~~~~l~~~~~Vck~W~~~~--~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 203 (541)
+.|||||+..||+.|..+++.+++.|||+||.++ .++|...|+.... +..+.+.+++++. +..+.+.. ..+
T Consensus 99 ~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~----i~p~~l~~l~~rg--V~v~Rlar-~~~ 171 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRN----IHPDVLGRLLSRG--VIVFRLAR-SFM 171 (419)
T ss_pred ccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCc----cChhHHHHHHhCC--eEEEEcch-hhh
Confidence 4459999999999999999999999999999999 8999988765433 3445566665543 33444432 222
Q ss_pred ChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEecccCCCCCchhHHHHH
Q 045871 204 DATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISLEFSRQENDSTDLTTMA 283 (541)
Q Consensus 204 ~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~ 283 (541)
.+..+...+.-. =..|++|||+. ..++.. . +
T Consensus 172 ~~prlae~~~~f-------------------------------------------rsRlq~lDLS~-s~it~s----t-l 202 (419)
T KOG2120|consen 172 DQPRLAEHFSPF-------------------------------------------RSRLQHLDLSN-SVITVS----T-L 202 (419)
T ss_pred cCchhhhhhhhh-------------------------------------------hhhhHHhhcch-hheeHH----H-H
Confidence 222222222111 02355555554 222221 1 2
Q ss_pred HHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHH
Q 045871 284 DGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMI 363 (541)
Q Consensus 284 ~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l 363 (541)
..+-..|.+|+.|.++++.++|..+..++ .-.+|+.|+|+.|.+++..++..+..+|+.|.+|+|++|.++.+.+..+
T Consensus 203 ~~iLs~C~kLk~lSlEg~~LdD~I~~~iA--kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~ 280 (419)
T KOG2120|consen 203 HGILSQCSKLKNLSLEGLRLDDPIVNTIA--KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVA 280 (419)
T ss_pred HHHHHHHHhhhhccccccccCcHHHHHHh--ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHH
Confidence 33334899999999999999999988884 6789999999999999999999999999999999999997666667666
Q ss_pred HhhCCCCccEEeccCCCC-CCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCcccccceeecccchhhcHHHHHHHHh
Q 045871 364 CNVFPNTLSRLLLALCPN-ITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDETCDFELQKAFNNKLHLMYQKLIIK 442 (541)
Q Consensus 364 ~~~~~~~L~~L~l~~c~~-l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~ 442 (541)
..+..++|+.|+|+||.. +.+..+..+.+.||+|..|| |++|..+.+.....+.+
T Consensus 281 V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LD------------------------LSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 281 VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLD------------------------LSDSVMLKNDCFQEFFK 336 (419)
T ss_pred HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeec------------------------cccccccCchHHHHHHh
Confidence 555557999999999854 46677888888899887776 55556666667777888
Q ss_pred CCCccEEEcCCCccHHH----HHhcCCCCCeeeccCCCCCCH-hHHHhcCCCCcE
Q 045871 443 HCCLKKLSLWGCSGLDA----LCLNCPELNDLNLNSCRNLRP-ETLLLHCPRLES 492 (541)
Q Consensus 443 ~~~L~~L~L~~~~~l~~----l~~~~~~L~~L~L~~c~~~~d-~~l~~~~p~L~~ 492 (541)
++.|++|.+..|.++.. .....|.|.+|++.+|-.-+. +.+...||+|+.
T Consensus 337 f~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI 391 (419)
T ss_pred cchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence 99999999999987643 224578899999888743222 555677888773
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.86 E-value=8.1e-22 Score=190.98 Aligned_cols=284 Identities=18% Similarity=0.250 Sum_probs=217.9
Q ss_pred CCcchhhHHHHHhhCCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeec
Q 045871 175 PRAQVGFVGSVLQKCSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKME 254 (541)
Q Consensus 175 ~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~ 254 (541)
..+...-+..+...|+++++|.+.+|..++|..+..++.+|++|++|++..|. .+|+..+..+.+.|++|++++++
T Consensus 149 r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~----~iT~~~Lk~la~gC~kL~~lNlS 224 (483)
T KOG4341|consen 149 RAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS----SITDVSLKYLAEGCRKLKYLNLS 224 (483)
T ss_pred ccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc----hhHHHHHHHHHHhhhhHHHhhhc
Confidence 34555667888888999999999999999999999999999999999999987 58898888899999999999987
Q ss_pred C------------ccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCc-ccchHHHHHHHHhcCCCCCE
Q 045871 255 G------------IFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASI-RLSHSVVLALTAAGLRGLRM 321 (541)
Q Consensus 255 ~------------~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~~~L~~ 321 (541)
. ...|.+++++.+.+|....+.. +..+...++-+..+++-.| .++|..++.+. .+|..|+.
T Consensus 225 wc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~-----l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~-~~c~~lq~ 298 (483)
T KOG4341|consen 225 WCPQISGNGVQALQRGCKELEKLSLKGCLELELEA-----LLKAAAYCLEILKLNLQHCNQLTDEDLWLIA-CGCHALQV 298 (483)
T ss_pred cCchhhcCcchHHhccchhhhhhhhcccccccHHH-----HHHHhccChHhhccchhhhccccchHHHHHh-hhhhHhhh
Confidence 7 4467778888777887766542 4455557777888887666 46777777665 78999999
Q ss_pred EEcCCCCCCCHHHHHHHHhcCCCccEEEecCC-CCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCccee
Q 045871 322 LSLVLGSEITDASVAAIASTYSKLELLDLSGS-SISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELM 400 (541)
Q Consensus 322 L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l 400 (541)
|+.++|..++|..+.++.+++++|+.|.+.+| .+++.|+.+++..|+ .|+.+++..|.-+++..+..++.+|+.|+.+
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~-~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP-HLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh-hhhhhcccccceehhhhHhhhccCCchhccC
Confidence 99999999999999999999999999999999 899999999999995 8999999999999988899999999999988
Q ss_pred cccCCcCCCCCCCCC-------CcccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc-----cHHHHHhcCCCCC
Q 045871 401 DCGMSICDPTSEDSN-------SDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS-----GLDALCLNCPELN 468 (541)
Q Consensus 401 ~~~~~~~~~~~~~~~-------~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~-----~l~~l~~~~~~L~ 468 (541)
.+. .|..++++.. ....+++.|.++.|+.+.+...+.+..|++|+.+++.+|+ .+..+...+|+++
T Consensus 378 sls--hce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~ 455 (483)
T KOG4341|consen 378 SLS--HCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIK 455 (483)
T ss_pred Chh--hhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccce
Confidence 632 4555554411 1122345555555555555555555555555555555553 2334444455444
Q ss_pred eee
Q 045871 469 DLN 471 (541)
Q Consensus 469 ~L~ 471 (541)
..-
T Consensus 456 v~a 458 (483)
T KOG4341|consen 456 VHA 458 (483)
T ss_pred ehh
Confidence 443
No 4
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.62 E-value=5.2e-14 Score=141.52 Aligned_cols=67 Identities=18% Similarity=0.117 Sum_probs=30.7
Q ss_pred HHhCCCccEEEcCCCc----cHHHHHhc----CCCCCeeeccCCCCCCH--hH---HHhcCCCCcEecccCCccccHHHH
Q 045871 440 IIKHCCLKKLSLWGCS----GLDALCLN----CPELNDLNLNSCRNLRP--ET---LLLHCPRLESVHASGCQELLVDTI 506 (541)
Q Consensus 440 l~~~~~L~~L~L~~~~----~l~~l~~~----~~~L~~L~L~~c~~~~d--~~---l~~~~p~L~~L~l~~C~~it~~~i 506 (541)
+..+++|++|++++|. ++..+... .+.|++|++++|....+ .. ....+++|+.|+++++. +++++.
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~ 295 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGA 295 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHH
Confidence 3344555555555553 22233222 25566666666542211 11 12334556666666644 554443
Q ss_pred H
Q 045871 507 H 507 (541)
Q Consensus 507 ~ 507 (541)
+
T Consensus 296 ~ 296 (319)
T cd00116 296 Q 296 (319)
T ss_pred H
Confidence 3
No 5
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.58 E-value=7.7e-15 Score=156.17 Aligned_cols=282 Identities=27% Similarity=0.360 Sum_probs=186.9
Q ss_pred hhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEecccCCCCCchhHHHHHHH
Q 045871 206 TMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISLEFSRQENDSTDLTTMADG 285 (541)
Q Consensus 206 ~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~ 285 (541)
..+..+...+..++.+++..|.. .+....+..+.. .+++|+.|.+..|..+.+.. +..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~--------------~~~~L~~l~l~~~~~~~~~~-----~~~ 208 (482)
T KOG1947|consen 151 ERLLELSRGLANLESLSLSCCGS---LLLDKILLRLLS--------------SCPLLKRLSLSGCSKITDDS-----LDA 208 (482)
T ss_pred cchHHHHHHHHHHheeeeecccc---cccHHHHHHHHh--------------hCchhhHhhhcccccCChhh-----HHH
Confidence 33444444556666666666542 344444444432 46888888888888877643 334
Q ss_pred HhcCCCCCCeEEecCc--ccchHH--HHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCC-CCChHHH
Q 045871 286 LGRNCPRLQNIHIASI--RLSHSV--VLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGS-SISDSGI 360 (541)
Q Consensus 286 l~~~~~~L~~L~l~~~--~i~~~~--~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~-~i~~~~l 360 (541)
+...+++|++|+++.+ .+.... ...+ ...|++|+.|++.++..++|.++..++..|++|++|.+.+| .+++.|+
T Consensus 209 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl 287 (482)
T KOG1947|consen 209 LALKCPNLEELDLSGCCLLITLSPLLLLLL-LSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL 287 (482)
T ss_pred HHhhCchhheecccCcccccccchhHhhhh-hhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH
Confidence 5558999999999873 222222 2233 35789999999999988999999999999999999998889 5999999
Q ss_pred HHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccC-CcCCCCCCCCCC---cc--cccceeecccchhhcH
Q 045871 361 GMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGM-SICDPTSEDSNS---DE--TCDFELQKAFNNKLHL 434 (541)
Q Consensus 361 ~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~-~~~~~~~~~~~~---~~--~~l~~L~l~~c~~l~~ 434 (541)
..++..|+ .|++|+|++|..+++.++..++.+|++|+.+.+.. ..|......... .. .....+.+.+|.++++
T Consensus 288 ~~i~~~~~-~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~ 366 (482)
T KOG1947|consen 288 VSIAERCP-SLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTD 366 (482)
T ss_pred HHHHHhcC-cccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcch
Confidence 99999995 79999999999999999999998899988875211 123333322110 00 0123444444444443
Q ss_pred HHHHHHHhCCCcc-EEEcCCCccH-H---HHHhcCCCCCeeeccCCCCCCHhHHH---hcCCCCcEecccCCccccHHHH
Q 045871 435 MYQKLIIKHCCLK-KLSLWGCSGL-D---ALCLNCPELNDLNLNSCRNLRPETLL---LHCPRLESVHASGCQELLVDTI 506 (541)
Q Consensus 435 ~~~~~l~~~~~L~-~L~L~~~~~l-~---~l~~~~~~L~~L~L~~c~~~~d~~l~---~~~p~L~~L~l~~C~~it~~~i 506 (541)
....... ..... .+.+.||..+ . .....+..++.|++..|..+++..+. ..|.+++.+++.+|..++..++
T Consensus 367 ~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 367 LSLSYCG-ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred hhhhhhh-ccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 3333333 22221 3444444333 1 12223344689999999988885443 2288899999999999998887
Q ss_pred HHhHhc
Q 045871 507 HSQVKN 512 (541)
Q Consensus 507 ~~~~~~ 512 (541)
.....+
T Consensus 446 ~~~~~~ 451 (482)
T KOG1947|consen 446 EGFASN 451 (482)
T ss_pred hhhhcc
Confidence 765554
No 6
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.54 E-value=2e-12 Score=129.98 Aligned_cols=269 Identities=21% Similarity=0.199 Sum_probs=162.4
Q ss_pred HHHHHhhCCCccEEEecCCCCCChhhHHHH---hhcCCCccEEEeeecCCcccccC--HHHHHHHHhhCCCCceeeecCc
Q 045871 182 VGSVLQKCSALVRLSLTMESDVDATMLACI---AFSCPNLESMEIYTSGSAVNRIT--GDELGRFVADKRCLASLKMEGI 256 (541)
Q Consensus 182 l~~l~~~~~~L~~L~L~~~~~~~~~~L~~l---~~~~~~L~~L~L~~c~~~~~~it--~~~l~~~~~~~~~L~~L~l~~~ 256 (541)
...++....+|++|+++++ .+++..+..+ ....++|++|+++++. +. ...+..+... +
T Consensus 15 ~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-----~~~~~~~~~~~~~~-----------l 77 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNE-----TGRIPRGLQSLLQG-----------L 77 (319)
T ss_pred hHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccc-----cCCcchHHHHHHHH-----------H
Confidence 3444455556889999985 4555444333 3455778999888643 33 3333332222 2
Q ss_pred cCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHH--hcC-CCCCEEEcCCCCCCCHH
Q 045871 257 FNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTA--AGL-RGLRMLSLVLGSEITDA 333 (541)
Q Consensus 257 ~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~--~~~-~~L~~L~L~~~~~i~d~ 333 (541)
..+++|++|++++|...... ...+..+... ++|++|++++|.+.+.+...+.. ..+ ++|+.|+|.+| .+++.
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~---~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~ 152 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDG---CGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGA 152 (319)
T ss_pred HhcCceeEEEccCCCCChhH---HHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCch
Confidence 24577888888876554321 1112333334 66999999988887655443221 345 78899999887 45544
Q ss_pred HHHH---HHhcCCCccEEEecCCCCChHHHHHHHhhCC--CCccEEeccCCCCCCHHHHHHHHhc---CCCcceecccCC
Q 045871 334 SVAA---IASTYSKLELLDLSGSSISDSGIGMICNVFP--NTLSRLLLALCPNITSSGIQFATAQ---LPLLELMDCGMS 405 (541)
Q Consensus 334 ~l~~---l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~--~~L~~L~l~~c~~l~~~~l~~l~~~---~~~L~~l~~~~~ 405 (541)
+... ....+++|++|++++|.+++.++..+...+. ++|+.|++++| .+++.+...+... +++|+.|
T Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L----- 226 (319)
T cd00116 153 SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVL----- 226 (319)
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEE-----
Confidence 3333 3344678999999988888877776654331 47999999886 5776666655543 4444444
Q ss_pred cCCCCCCCCCCcccccceeecccchhhcH-HHHHHHHh----CCCccEEEcCCCc----cHH---HHHhcCCCCCeeecc
Q 045871 406 ICDPTSEDSNSDETCDFELQKAFNNKLHL-MYQKLIIK----HCCLKKLSLWGCS----GLD---ALCLNCPELNDLNLN 473 (541)
Q Consensus 406 ~~~~~~~~~~~~~~~l~~L~l~~c~~l~~-~~~~~l~~----~~~L~~L~L~~~~----~l~---~l~~~~~~L~~L~L~ 473 (541)
++++|. +++ ....+... .+.|++|++.+|. +.. .....+++|+.|+++
T Consensus 227 -------------------~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~ 286 (319)
T cd00116 227 -------------------NLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLR 286 (319)
T ss_pred -------------------ecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECC
Confidence 445443 332 12222222 4799999999985 222 333456789999999
Q ss_pred CCCCCCH--hHH---HhcC-CCCcEecccCC
Q 045871 474 SCRNLRP--ETL---LLHC-PRLESVHASGC 498 (541)
Q Consensus 474 ~c~~~~d--~~l---~~~~-p~L~~L~l~~C 498 (541)
+|..-.+ ..+ .... ++|+.|++.+-
T Consensus 287 ~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 287 GNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred CCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 9884433 112 1223 68999988764
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.51 E-value=8.9e-14 Score=160.70 Aligned_cols=123 Identities=16% Similarity=0.209 Sum_probs=56.6
Q ss_pred hCCCCceeeecC--------ccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhc
Q 045871 244 DKRCLASLKMEG--------IFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAG 315 (541)
Q Consensus 244 ~~~~L~~L~l~~--------~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~ 315 (541)
.+++|+.|.+++ ...+++|++|+|++|......+ ..++ .+++|++|++++|.+.......+ ..
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p------~~~~-~l~~L~~L~L~~n~l~~~~p~~~--~~ 186 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIP------NDIG-SFSSLKVLDLGGNVLVGKIPNSL--TN 186 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCC------hHHh-cCCCCCEEECccCcccccCChhh--hh
Confidence 445555555543 1234556666666543322111 1222 45566666666655433222222 24
Q ss_pred CCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCC
Q 045871 316 LRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALC 379 (541)
Q Consensus 316 ~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c 379 (541)
+++|++|+|.++. ++......+ ..+++|++|+|++|.++......+... .+|++|++++|
T Consensus 187 l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n 246 (968)
T PLN00113 187 LTSLEFLTLASNQ-LVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGL--TSLNHLDLVYN 246 (968)
T ss_pred CcCCCeeeccCCC-CcCcCChHH-cCcCCccEEECcCCccCCcCChhHhcC--CCCCEEECcCc
Confidence 5566666665542 221111122 225556666666555544333334433 45566666554
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.49 E-value=1.7e-13 Score=158.30 Aligned_cols=196 Identities=20% Similarity=0.135 Sum_probs=86.7
Q ss_pred hhCCCCceeeecC----------ccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHH
Q 045871 243 ADKRCLASLKMEG----------IFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALT 312 (541)
Q Consensus 243 ~~~~~L~~L~l~~----------~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~ 312 (541)
..+++|+.|.+++ +..+++|++|+|++|...... ...+. .+++|+.|++++|.+.......+
T Consensus 161 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~------p~~l~-~l~~L~~L~L~~n~l~~~~p~~l- 232 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI------PRELG-QMKSLKWIYLGYNNLSGEIPYEI- 232 (968)
T ss_pred hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcC------ChHHc-CcCCccEEECcCCccCCcCChhH-
Confidence 4455566666544 234555666666554332211 11222 45566666666665543322222
Q ss_pred HhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHh
Q 045871 313 AAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATA 392 (541)
Q Consensus 313 ~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~ 392 (541)
..+++|++|+|.++ .++......+ ..+++|++|+|++|.+++.....+... .+|+.|++++|. +... +.....
T Consensus 233 -~~l~~L~~L~L~~n-~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~Ls~n~-l~~~-~p~~~~ 305 (968)
T PLN00113 233 -GGLTSLNHLDLVYN-NLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSL--QKLISLDLSDNS-LSGE-IPELVI 305 (968)
T ss_pred -hcCCCCCEEECcCc-eeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhc--cCcCEEECcCCe-eccC-CChhHc
Confidence 34566666666654 2222211122 235666666666665544333334333 456666666542 2211 112223
Q ss_pred cCCCcceecccCCcCCCCCCCCCCcccccceeecccchhhcHHHHHHHHhCCCccEEEcCCC
Q 045871 393 QLPLLELMDCGMSICDPTSEDSNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGC 454 (541)
Q Consensus 393 ~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~ 454 (541)
.+++|+.|++..................++.|+|+.|.- .+.....+..+++|+.|+|+++
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF-SGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC-cCcCChHHhCCCCCcEEECCCC
Confidence 455666665322111000000011122245555555432 2233334445555555555544
No 9
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1e-13 Score=129.44 Aligned_cols=202 Identities=22% Similarity=0.242 Sum_probs=145.4
Q ss_pred CCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCc
Q 045871 292 RLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTL 371 (541)
Q Consensus 292 ~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L 371 (541)
....+.+....+.+..+...+...-..|++|+|+.. .|+-..+..+...|.+|+.|.|.++.++|.-...|++. .+|
T Consensus 160 gV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN--~~L 236 (419)
T KOG2120|consen 160 GVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN--SNL 236 (419)
T ss_pred CeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc--ccc
Confidence 566677776666666544443223346999999864 78888898888889999999999999999999999998 789
Q ss_pred cEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCC--cccc--cceeecccchhhc--HHHHHHHHhCCC
Q 045871 372 SRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNS--DETC--DFELQKAFNNKLH--LMYQKLIIKHCC 445 (541)
Q Consensus 372 ~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~--~~~~--l~~L~l~~c~~l~--~~~~~~l~~~~~ 445 (541)
+.|+|+.|..++..+++-+..+|+.|+.|++ +.|+........ ..++ ++.|+|++|.+.- ..+..+..+||+
T Consensus 237 ~~lnlsm~sG~t~n~~~ll~~scs~L~~LNl--sWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~ 314 (419)
T KOG2120|consen 237 VRLNLSMCSGFTENALQLLLSSCSRLDELNL--SWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPN 314 (419)
T ss_pred eeeccccccccchhHHHHHHHhhhhHhhcCc--hHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCc
Confidence 9999999999999999999999999999973 344444333111 1122 4677777776632 344555667777
Q ss_pred ccEEEcCCCc----cHHHHHhcCCCCCeeeccCCCCCCHhHHH--hcCCCCcEecccCC
Q 045871 446 LKKLSLWGCS----GLDALCLNCPELNDLNLNSCRNLRPETLL--LHCPRLESVHASGC 498 (541)
Q Consensus 446 L~~L~L~~~~----~l~~l~~~~~~L~~L~L~~c~~~~d~~l~--~~~p~L~~L~l~~C 498 (541)
|.+|+|+.|- +....+-.++-|++|.++.|..+.++.+. ..-|.|.+|++.||
T Consensus 315 l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 315 LVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 7777777763 33333345777777777777777665443 55677777877777
No 10
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.40 E-value=1.7e-12 Score=138.10 Aligned_cols=272 Identities=26% Similarity=0.349 Sum_probs=155.7
Q ss_pred hhCCCccEEEecCCCC-CChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceE
Q 045871 187 QKCSALVRLSLTMESD-VDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREI 265 (541)
Q Consensus 187 ~~~~~L~~L~L~~~~~-~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L 265 (541)
..+..++.+.+..+.. ..+..+..+...+++|+.|.+.+|. .+++.++..+.. .+++|++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~----~~~~~~~~~~~~--------------~~~~L~~L 219 (482)
T KOG1947|consen 158 RGLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCS----KITDDSLDALAL--------------KCPNLEEL 219 (482)
T ss_pred HHHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccc----cCChhhHHHHHh--------------hCchhhee
Confidence 3344455555554333 3344455555567788888777765 466666555543 45555666
Q ss_pred Eecc-cCCCCCchhHHHHHHHHhcCCCCCCeEEecCcc-cchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCC
Q 045871 266 SLEF-SRQENDSTDLTTMADGLGRNCPRLQNIHIASIR-LSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYS 343 (541)
Q Consensus 266 ~L~~-~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~ 343 (541)
++++ |......... ...+...|++|+.|+++.+. +++.++..+. ..|++|+.|.+.+|..++++++..++..|+
T Consensus 220 ~l~~~~~~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~-~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~ 295 (482)
T KOG1947|consen 220 DLSGCCLLITLSPLL---LLLLLSICRKLKSLDLSGCGLVTDIGLSALA-SRCPNLETLSLSNCSNLTDEGLVSIAERCP 295 (482)
T ss_pred cccCcccccccchhH---hhhhhhhcCCcCccchhhhhccCchhHHHHH-hhCCCcceEccCCCCccchhHHHHHHHhcC
Confidence 6554 2222222111 11244467777777777776 6666666665 457777777777776677777777777777
Q ss_pred CccEEEecCC-CCChHHHHHHHhhCCCCccEEeccC---CCCCCHHHHHHHHhcCC-CcceecccCCcCCCCCCCCCCc-
Q 045871 344 KLELLDLSGS-SISDSGIGMICNVFPNTLSRLLLAL---CPNITSSGIQFATAQLP-LLELMDCGMSICDPTSEDSNSD- 417 (541)
Q Consensus 344 ~L~~L~L~~~-~i~~~~l~~l~~~~~~~L~~L~l~~---c~~l~~~~l~~l~~~~~-~L~~l~~~~~~~~~~~~~~~~~- 417 (541)
+|++|+|++| .+++.++..+...|+ +|+.|.+.. |..+++.++..+..... .+..+. ...|.+..+.....
T Consensus 296 ~L~~L~l~~c~~~~d~~l~~~~~~c~-~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~--~~~~~~l~~~~l~~~ 372 (482)
T KOG1947|consen 296 SLRELDLSGCHGLTDSGLEALLKNCP-NLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELI--LRSCPKLTDLSLSYC 372 (482)
T ss_pred cccEEeeecCccchHHHHHHHHHhCc-chhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHH--HhcCCCcchhhhhhh
Confidence 7888877777 677777777766663 555544333 34455544433332221 121111 11222222111100
Q ss_pred -cccc-ceeecccchhhcHHHHHHHHhCCCccEEEcCCCc-----cHHHHHhcCCCCCeeeccCCCCCCHhHH
Q 045871 418 -ETCD-FELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS-----GLDALCLNCPELNDLNLNSCRNLRPETL 483 (541)
Q Consensus 418 -~~~l-~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~-----~l~~l~~~~~~L~~L~L~~c~~~~d~~l 483 (541)
.... ..+.+.+|..++..+......+..|+.|++..|. .+......|..++.+++.+|..++...+
T Consensus 373 ~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 373 GISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred hccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 0001 1467778887752333333344458999999985 4444444488999999999998877443
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.34 E-value=4.5e-13 Score=135.43 Aligned_cols=153 Identities=18% Similarity=0.157 Sum_probs=63.4
Q ss_pred CCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCccccc
Q 045871 342 YSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDETCD 421 (541)
Q Consensus 342 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l 421 (541)
|.++++|+|..|+++...-.-+... ..|+.|++++ +.|....+..- ..|+.|+.|++..................+
T Consensus 268 l~kme~l~L~~N~l~~vn~g~lfgL--t~L~~L~lS~-NaI~rih~d~W-sftqkL~~LdLs~N~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 268 LEKMEHLNLETNRLQAVNEGWLFGL--TSLEQLDLSY-NAIQRIHIDSW-SFTQKLKELDLSSNRITRLDEGSFRVLSQL 343 (873)
T ss_pred ecccceeecccchhhhhhccccccc--chhhhhccch-hhhheeecchh-hhcccceeEeccccccccCChhHHHHHHHh
Confidence 5566666666664443222222222 3455555554 22221111111 235556666532221111111111111223
Q ss_pred ceeecccchhhcHHHHHHHHhCCCccEEEcCCCc------cHHHHHhcCCCCCeeeccCCCCCC-HhHHHhcCCCCcEec
Q 045871 422 FELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS------GLDALCLNCPELNDLNLNSCRNLR-PETLLLHCPRLESVH 494 (541)
Q Consensus 422 ~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~------~l~~l~~~~~~L~~L~L~~c~~~~-d~~l~~~~p~L~~L~ 494 (541)
++|.|+.+. ++....-.+..+.+|++|+|..+. .-...+..+++|+.|.+.++..-. ....+.+++.|++|+
T Consensus 344 e~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld 422 (873)
T KOG4194|consen 344 EELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD 422 (873)
T ss_pred hhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceec
Confidence 555555432 222222234444566666665552 212333445666666665554211 133445566666666
Q ss_pred ccCCc
Q 045871 495 ASGCQ 499 (541)
Q Consensus 495 l~~C~ 499 (541)
|.+..
T Consensus 423 L~~Na 427 (873)
T KOG4194|consen 423 LGDNA 427 (873)
T ss_pred CCCCc
Confidence 65543
No 12
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.27 E-value=4.1e-11 Score=114.80 Aligned_cols=201 Identities=17% Similarity=0.203 Sum_probs=106.6
Q ss_pred hHHHHHhhCCCccEEEecCCCCCChhhHHHH---hhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCcc
Q 045871 181 FVGSVLQKCSALVRLSLTMESDVDATMLACI---AFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIF 257 (541)
Q Consensus 181 ~l~~l~~~~~~L~~L~L~~~~~~~~~~L~~l---~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~ 257 (541)
.+.........+.+++|++ ..++...-.++ ..+.++|+..+++. .+++.....+...+..|-.- +.
T Consensus 21 ~v~~~~~~~~s~~~l~lsg-nt~G~EAa~~i~~~L~~~~~L~~v~~sd------~ftGR~~~Ei~e~L~~l~~a----L~ 89 (382)
T KOG1909|consen 21 DVEEELEPMDSLTKLDLSG-NTFGTEAARAIAKVLASKKELREVNLSD------MFTGRLKDEIPEALKMLSKA----LL 89 (382)
T ss_pred hHHHHhcccCceEEEeccC-CchhHHHHHHHHHHHhhcccceeeehHh------hhcCCcHHHHHHHHHHHHHH----Hh
Confidence 3555556667788888888 44544333333 33446777777765 23321111111111111000 34
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHH-----------hcCCCCCEEEcCC
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTA-----------AGLRGLRMLSLVL 326 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~-----------~~~~~L~~L~L~~ 326 (541)
.||.|++|+||.+....+ ++..+-..|. .|..|++|.+.+|.+...+...+.. ..-+.|+.+...+
T Consensus 90 ~~~~L~~ldLSDNA~G~~--g~~~l~~ll~-s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPK--GIRGLEELLS-SCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred cCCceeEeeccccccCcc--chHHHHHHHH-hccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 677888888886433322 3333333344 6778888888888777665444321 2334566666554
Q ss_pred CCCCCHHHH---HHHHhcCCCccEEEecCCCCChHHHHHHHh---hCCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 045871 327 GSEITDASV---AAIASTYSKLELLDLSGSSISDSGIGMICN---VFPNTLSRLLLALCPNITSSGIQFATAQLPLLE 398 (541)
Q Consensus 327 ~~~i~d~~l---~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~---~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~ 398 (541)
+ .+.+.+. ....+.++.|+.+.++.|.|...|+..+.. .| ++|+.|+|+. +.++..+-..++..++.+.
T Consensus 167 N-rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~-~~LevLdl~D-Ntft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 167 N-RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHC-PHLEVLDLRD-NTFTLEGSVALAKALSSWP 241 (382)
T ss_pred c-ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhC-Ccceeeeccc-chhhhHHHHHHHHHhcccc
Confidence 3 3444333 333444566777777777666666543322 23 4666666666 4455555555554443333
No 13
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.24 E-value=1.1e-10 Score=111.89 Aligned_cols=262 Identities=19% Similarity=0.233 Sum_probs=176.4
Q ss_pred hHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEecccCCCCCc----hhHHHH
Q 045871 207 MLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISLEFSRQENDS----TDLTTM 282 (541)
Q Consensus 207 ~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~~~~~~----~~l~~l 282 (541)
.+.........++.++|++ |.+..+....++..+. +.++|++.+++..+..-.. ..+..+
T Consensus 21 ~v~~~~~~~~s~~~l~lsg-----nt~G~EAa~~i~~~L~-----------~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l 84 (382)
T KOG1909|consen 21 DVEEELEPMDSLTKLDLSG-----NTFGTEAARAIAKVLA-----------SKKELREVNLSDMFTGRLKDEIPEALKML 84 (382)
T ss_pred hHHHHhcccCceEEEeccC-----CchhHHHHHHHHHHHh-----------hcccceeeehHhhhcCCcHHHHHHHHHHH
Confidence 3445555668899999997 3466655555544422 3456777777753211111 133344
Q ss_pred HHHHhcCCCCCCeEEecCcccchHHHHH---HHHhcCCCCCEEEcCCCCCCCHHHHHHHH------------hcCCCccE
Q 045871 283 ADGLGRNCPRLQNIHIASIRLSHSVVLA---LTAAGLRGLRMLSLVLGSEITDASVAAIA------------STYSKLEL 347 (541)
Q Consensus 283 ~~~l~~~~~~L~~L~l~~~~i~~~~~~~---l~~~~~~~L~~L~L~~~~~i~d~~l~~l~------------~~~~~L~~ 347 (541)
..++. .||+|+.|+|++|.+...++.. ++ ..+..|++|.|..| +++..+-..+. ..-+.|+.
T Consensus 85 ~~aL~-~~~~L~~ldLSDNA~G~~g~~~l~~ll-~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv 161 (382)
T KOG1909|consen 85 SKALL-GCPKLQKLDLSDNAFGPKGIRGLEELL-SSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRV 161 (382)
T ss_pred HHHHh-cCCceeEeeccccccCccchHHHHHHH-HhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEE
Confidence 55666 8999999999999988876554 44 57999999999988 56655443332 23468999
Q ss_pred EEecCCCCChHHHHHHHhhC--CCCccEEeccCCCCCCHHHHHHH---HhcCCCcceecccCCcCCCCCCCCCCcccccc
Q 045871 348 LDLSGSSISDSGIGMICNVF--PNTLSRLLLALCPNITSSGIQFA---TAQLPLLELMDCGMSICDPTSEDSNSDETCDF 422 (541)
Q Consensus 348 L~L~~~~i~~~~l~~l~~~~--~~~L~~L~l~~c~~l~~~~l~~l---~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~ 422 (541)
++..+|.+.+.|...++..+ .+.|+.+.+.. +.|...++..+ ...|++|+.||+.. |.....
T Consensus 162 ~i~~rNrlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~D----Ntft~e-------- 228 (382)
T KOG1909|consen 162 FICGRNRLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRD----NTFTLE-------- 228 (382)
T ss_pred EEeeccccccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeeccc----chhhhH--------
Confidence 99999999998887776554 25899999998 67877776443 35799999998533 222110
Q ss_pred eeecccchhhcHHHHHHHHhCCCccEEEcCCCc----c----HHHHHhcCCCCCeeeccCCCCCCHhHH-----HhcCCC
Q 045871 423 ELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS----G----LDALCLNCPELNDLNLNSCRNLRPETL-----LLHCPR 489 (541)
Q Consensus 423 ~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~----~----l~~l~~~~~~L~~L~L~~c~~~~d~~l-----~~~~p~ 489 (541)
-+..+.+.+..+++|+.|++..|- | +.++-...|+|+.|.+.+|....+..+ ...-|.
T Consensus 229 ---------gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~d 299 (382)
T KOG1909|consen 229 ---------GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPD 299 (382)
T ss_pred ---------HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchh
Confidence 112555667777889999999883 3 345556688999999998875544211 134788
Q ss_pred CcEecccCCccc--cHHHHHHhH
Q 045871 490 LESVHASGCQEL--LVDTIHSQV 510 (541)
Q Consensus 490 L~~L~l~~C~~i--t~~~i~~~~ 510 (541)
|+.|+|.+|. + .++++..+.
T Consensus 300 L~kLnLngN~-l~e~de~i~ei~ 321 (382)
T KOG1909|consen 300 LEKLNLNGNR-LGEKDEGIDEIA 321 (382)
T ss_pred hHHhcCCccc-ccccchhHHHHH
Confidence 9999999987 4 455555554
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.23 E-value=6.6e-13 Score=134.27 Aligned_cols=278 Identities=19% Similarity=0.151 Sum_probs=130.6
Q ss_pred CCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC----------ccCCCCcceEEecccCCCCCchhHHHHHHH
Q 045871 216 PNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG----------IFNCPNMREISLEFSRQENDSTDLTTMADG 285 (541)
Q Consensus 216 ~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~----------~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~ 285 (541)
.++++|+|++ |.||.-+...| ..+.+|..|+++. +.++|.|+.|+|..+.. .... ..
T Consensus 173 ~ni~~L~La~-----N~It~l~~~~F-~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i-rive------~l 239 (873)
T KOG4194|consen 173 VNIKKLNLAS-----NRITTLETGHF-DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI-RIVE------GL 239 (873)
T ss_pred CCceEEeecc-----ccccccccccc-cccchheeeecccCcccccCHHHhhhcchhhhhhccccce-eeeh------hh
Confidence 5677777774 45665444433 2344667777665 45577888888875321 1111 11
Q ss_pred HhcCCCCCCeEEecCcccc--hHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHH
Q 045871 286 LGRNCPRLQNIHIASIRLS--HSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMI 363 (541)
Q Consensus 286 l~~~~~~L~~L~l~~~~i~--~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l 363 (541)
-+++++.|+.|.+..|.|. +++++ ..+.++++|+|..+ .++.-. +...-++..|+.|+|++|.|..-.....
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~F----y~l~kme~l~L~~N-~l~~vn-~g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAF----YGLEKMEHLNLETN-RLQAVN-EGWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcce----eeecccceeecccc-hhhhhh-cccccccchhhhhccchhhhheeecchh
Confidence 2336677777777777543 23322 23556666666543 111100 0011123444444444443333222222
Q ss_pred HhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCcccccceeecccchh---hcHHHHHHH
Q 045871 364 CNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDETCDFELQKAFNNK---LHLMYQKLI 440 (541)
Q Consensus 364 ~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~~---l~~~~~~~l 440 (541)
.-. ++|+.|+|+. +.|+...-..+ ..+..|+.|.++....+...........++++|||+.+.- +. .....+
T Consensus 314 sft--qkL~~LdLs~-N~i~~l~~~sf-~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE-Daa~~f 388 (873)
T KOG4194|consen 314 SFT--QKLKELDLSS-NRITRLDEGSF-RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE-DAAVAF 388 (873)
T ss_pred hhc--ccceeEeccc-cccccCChhHH-HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe-cchhhh
Confidence 211 3444444444 23321100000 1122333333221111111111111112233444433221 12 344557
Q ss_pred HhCCCccEEEcCCCc--cH-HHHHhcCCCCCeeeccCCCCCCH-hHHHhcCCCCcEecccCCccccHHHH----HHhHhc
Q 045871 441 IKHCCLKKLSLWGCS--GL-DALCLNCPELNDLNLNSCRNLRP-ETLLLHCPRLESVHASGCQELLVDTI----HSQVKN 512 (541)
Q Consensus 441 ~~~~~L~~L~L~~~~--~l-~~l~~~~~~L~~L~L~~c~~~~d-~~l~~~~p~L~~L~l~~C~~it~~~i----~~~~~~ 512 (541)
..++.|++|.+.|+. .+ +..+..++.||.|+|.++..-+- ...+... +|+.|.+..-..+=|-.+ +|++.+
T Consensus 389 ~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~ 467 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRR 467 (873)
T ss_pred ccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhc
Confidence 779999999999984 22 34556789999999998875332 2223333 677776654333333333 344455
Q ss_pred Cccccc
Q 045871 513 NPSALE 518 (541)
Q Consensus 513 ~~~~~~ 518 (541)
.+.++.
T Consensus 468 ~lq~sv 473 (873)
T KOG4194|consen 468 KLQSSV 473 (873)
T ss_pred ccccce
Confidence 554444
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.17 E-value=1.1e-10 Score=136.12 Aligned_cols=238 Identities=16% Similarity=0.206 Sum_probs=125.6
Q ss_pred hhCCCCceeeecC---------ccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHH
Q 045871 243 ADKRCLASLKMEG---------IFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTA 313 (541)
Q Consensus 243 ~~~~~L~~L~l~~---------~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~ 313 (541)
..+++|+.|.+++ +..+++|++|+|++|......+ ..+. .+++|+.|++++|.........
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp------~si~-~L~~L~~L~L~~c~~L~~Lp~~--- 700 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELP------SSIQ-YLNKLEDLDMSRCENLEILPTG--- 700 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccc------hhhh-ccCCCCEEeCCCCCCcCccCCc---
Confidence 3455666666654 2345666777776665443321 2233 5666777777666322111000
Q ss_pred hcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHH-------H--------------------HHHHhh
Q 045871 314 AGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSG-------I--------------------GMICNV 366 (541)
Q Consensus 314 ~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~-------l--------------------~~l~~~ 366 (541)
.++++|+.|+|++|..+.. +.....+|++|+|+++.|+.-. + ..+...
T Consensus 701 i~l~sL~~L~Lsgc~~L~~-----~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~ 775 (1153)
T PLN03210 701 INLKSLYRLNLSGCSRLKS-----FPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTM 775 (1153)
T ss_pred CCCCCCCEEeCCCCCCccc-----cccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhh
Confidence 1456677777776643321 1122345666666655433200 0 000001
Q ss_pred CCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCC-CcccccceeecccchhhcHHHHHHHHhCCC
Q 045871 367 FPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSN-SDETCDFELQKAFNNKLHLMYQKLIIKHCC 445 (541)
Q Consensus 367 ~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~-~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~ 445 (541)
.+++|+.|+|++|..+.. +..-..++++|+.|++ ..|.+....+. .....++.|++++|..+... . ....+
T Consensus 776 ~~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~L--s~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~-p---~~~~n 847 (1153)
T PLN03210 776 LSPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEI--ENCINLETLPTGINLESLESLDLSGCSRLRTF-P---DISTN 847 (1153)
T ss_pred ccccchheeCCCCCCccc--cChhhhCCCCCCEEEC--CCCCCcCeeCCCCCccccCEEECCCCCccccc-c---ccccc
Confidence 124677777777654432 1112345777777773 23433322211 12234678888888776521 1 11357
Q ss_pred ccEEEcCCCc--cHHHHHhcCCCCCeeeccCCCCCCHh-HHHhcCCCCcEecccCCccccH
Q 045871 446 LKKLSLWGCS--GLDALCLNCPELNDLNLNSCRNLRPE-TLLLHCPRLESVHASGCQELLV 503 (541)
Q Consensus 446 L~~L~L~~~~--~l~~l~~~~~~L~~L~L~~c~~~~d~-~l~~~~p~L~~L~l~~C~~it~ 503 (541)
|+.|+|.++. .+..-...+++|+.|+|++|.++..- .....+++|+.|++++|..++.
T Consensus 848 L~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 848 ISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred cCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 7777777663 33344456888888888888877551 1234677888888888877753
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.11 E-value=2.3e-10 Score=133.41 Aligned_cols=61 Identities=25% Similarity=0.300 Sum_probs=34.7
Q ss_pred CCCccEEEcCCCccHHHHHhcCCCCCeeeccCCCCCCHhHHHhcCCCCcEecccCCccccH
Q 045871 443 HCCLKKLSLWGCSGLDALCLNCPELNDLNLNSCRNLRPETLLLHCPRLESVHASGCQELLV 503 (541)
Q Consensus 443 ~~~L~~L~L~~~~~l~~l~~~~~~L~~L~L~~c~~~~d~~l~~~~p~L~~L~l~~C~~it~ 503 (541)
+++|+.|+|++|..+..+.....+|++|+|+++....-..-...+++|+.|+|.+|..++.
T Consensus 824 L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 824 LESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred ccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCc
Confidence 3445555555554443333334455555555543211122346789999999999988864
No 17
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=8.5e-10 Score=108.69 Aligned_cols=201 Identities=20% Similarity=0.177 Sum_probs=138.0
Q ss_pred CCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCh---HHHHHHHh
Q 045871 289 NCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISD---SGIGMICN 365 (541)
Q Consensus 289 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~---~~l~~l~~ 365 (541)
...+|+++.+.++.+...+....+ ..|++++.|+|+++-.-.+..+..+++.+|+|+.|+|+.|.+.. .-.....
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~-k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l- 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYS-KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL- 196 (505)
T ss_pred hHHhhhheeecCccccccchhhhh-hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh-
Confidence 667899999999987776643333 57999999999988667788999999999999999999984432 1111112
Q ss_pred hCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCC-cc-cccceeecccchhhcHHHHHHHHhC
Q 045871 366 VFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNS-DE-TCDFELQKAFNNKLHLMYQKLIIKH 443 (541)
Q Consensus 366 ~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~-~~-~~l~~L~l~~c~~l~~~~~~~l~~~ 443 (541)
.+|+.|.|+.| .++...+..+...+|+|+.|++.... ........ .. ..+++|+|+..+.++..-.-..+.+
T Consensus 197 ---~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~--~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 197 ---SHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANE--IILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred ---hhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhccc--ccceecchhhhhhHHhhccccCCcccccccccccccc
Confidence 57999999999 68899999999999999999864432 11111111 11 1268899999888775444556778
Q ss_pred CCccEEEcCCCc---------cHHHHHhcCCCCCeeeccCCCCC--CHhHHHhcCCCCcEecccC
Q 045871 444 CCLKKLSLWGCS---------GLDALCLNCPELNDLNLNSCRNL--RPETLLLHCPRLESVHASG 497 (541)
Q Consensus 444 ~~L~~L~L~~~~---------~l~~l~~~~~~L~~L~L~~c~~~--~d~~l~~~~p~L~~L~l~~ 497 (541)
+.|..|++..+. +.......+++|+.|++..|... ..-.-....++|+.|.+.+
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 888888887662 11122335788999988887641 1111223456666666543
No 18
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.3e-09 Score=105.77 Aligned_cols=167 Identities=18% Similarity=0.142 Sum_probs=75.8
Q ss_pred HHHHHhhC---CCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccC-HHHHHHHHhhCCCCceeeecCcc
Q 045871 182 VGSVLQKC---SALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRIT-GDELGRFVADKRCLASLKMEGIF 257 (541)
Q Consensus 182 l~~l~~~~---~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it-~~~l~~~~~~~~~L~~L~l~~~~ 257 (541)
+..+.++- .+|+++.|.+ ..+.+.+....+..|++++.|||+. |-++ ...+..+++.+++
T Consensus 110 fDki~akQsn~kkL~~IsLdn-~~V~~~~~~~~~k~~~~v~~LdLS~-----NL~~nw~~v~~i~eqLp~---------- 173 (505)
T KOG3207|consen 110 FDKIAAKQSNLKKLREISLDN-YRVEDAGIEEYSKILPNVRDLDLSR-----NLFHNWFPVLKIAEQLPS---------- 173 (505)
T ss_pred HHHHHHHhhhHHhhhheeecC-ccccccchhhhhhhCCcceeecchh-----hhHHhHHHHHHHHHhccc----------
Confidence 44444433 3466666776 3444444445566677777777764 1222 2344555543333
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHH
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAA 337 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~ 337 (541)
|+.|+|+.+.......... -..++.|+.|.++.|.++...+..+. ..||+|+.|.|.++..+.-....
T Consensus 174 ----Le~LNls~Nrl~~~~~s~~------~~~l~~lK~L~l~~CGls~k~V~~~~-~~fPsl~~L~L~~N~~~~~~~~~- 241 (505)
T KOG3207|consen 174 ----LENLNLSSNRLSNFISSNT------TLLLSHLKQLVLNSCGLSWKDVQWIL-LTFPSLEVLYLEANEIILIKATS- 241 (505)
T ss_pred ----chhcccccccccCCccccc------hhhhhhhheEEeccCCCCHHHHHHHH-HhCCcHHHhhhhcccccceecch-
Confidence 3333333321111100000 00344566666666666655555544 35666666666554211111100
Q ss_pred HHhcCCCccEEEecCCCCCh-HHHHHHHhhCCCCccEEeccCC
Q 045871 338 IASTYSKLELLDLSGSSISD-SGIGMICNVFPNTLSRLLLALC 379 (541)
Q Consensus 338 l~~~~~~L~~L~L~~~~i~~-~~l~~l~~~~~~~L~~L~l~~c 379 (541)
...+..|++|||++|.+-+ .-+..++.. +.|+.|+++.|
T Consensus 242 -~~i~~~L~~LdLs~N~li~~~~~~~~~~l--~~L~~Lnls~t 281 (505)
T KOG3207|consen 242 -TKILQTLQELDLSNNNLIDFDQGYKVGTL--PGLNQLNLSST 281 (505)
T ss_pred -hhhhhHHhhccccCCcccccccccccccc--cchhhhhcccc
Confidence 0113346666666663333 222233332 45555655554
No 19
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.66 E-value=1.1e-08 Score=71.05 Aligned_cols=42 Identities=36% Similarity=0.728 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhh--HHHHhhcc
Q 045871 126 GGLPAAALWEVLRRLPPPGLLAAAQVCKGWRETS--RRLWRAAE 167 (541)
Q Consensus 126 ~~LP~eil~~If~~L~~~~l~~~~~Vck~W~~~~--~~~~~~i~ 167 (541)
..||+||+.+||++|++.|+.++++|||+|+.++ ..+|+.+.
T Consensus 2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~ 45 (47)
T PF12937_consen 2 SSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC 45 (47)
T ss_dssp CCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence 3579999999999999999999999999999999 67998764
No 20
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.57 E-value=9.7e-09 Score=105.26 Aligned_cols=78 Identities=23% Similarity=0.247 Sum_probs=37.0
Q ss_pred cCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcC
Q 045871 315 GLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQL 394 (541)
Q Consensus 315 ~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~ 394 (541)
.+.+|+.++|+.+ .++- +..-.-.+++|+.|+|++|.|+.-.+. +..+ .+|++|+++. +.++. +....-.+
T Consensus 220 ~l~NL~dvDlS~N-~Lp~--vPecly~l~~LrrLNLS~N~iteL~~~-~~~W--~~lEtLNlSr-NQLt~--LP~avcKL 290 (1255)
T KOG0444|consen 220 DLHNLRDVDLSEN-NLPI--VPECLYKLRNLRRLNLSGNKITELNMT-EGEW--ENLETLNLSR-NQLTV--LPDAVCKL 290 (1255)
T ss_pred hhhhhhhcccccc-CCCc--chHHHhhhhhhheeccCcCceeeeecc-HHHH--hhhhhhcccc-chhcc--chHHHhhh
Confidence 3455566665543 2221 111112256677777777766653322 1222 4677777776 34431 11111225
Q ss_pred CCcceec
Q 045871 395 PLLELMD 401 (541)
Q Consensus 395 ~~L~~l~ 401 (541)
+.|+.|+
T Consensus 291 ~kL~kLy 297 (1255)
T KOG0444|consen 291 TKLTKLY 297 (1255)
T ss_pred HHHHHHH
Confidence 5566664
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.51 E-value=5e-09 Score=107.33 Aligned_cols=279 Identities=15% Similarity=0.134 Sum_probs=147.0
Q ss_pred CccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC---------ccCCCC
Q 045871 191 ALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG---------IFNCPN 261 (541)
Q Consensus 191 ~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~---------~~~~~~ 261 (541)
-++-+++++....++. +..-......++-|.|... .-..+..-+..+.+|+.|.+.. +..+|.
T Consensus 8 FVrGvDfsgNDFsg~~-FP~~v~qMt~~~WLkLnrt-------~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~ 79 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDR-FPHDVEQMTQMTWLKLNRT-------KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPR 79 (1255)
T ss_pred eeecccccCCcCCCCc-CchhHHHhhheeEEEechh-------hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchh
Confidence 3455666663333222 1111223356777777642 1222223334445566666654 455666
Q ss_pred cceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhc
Q 045871 262 MREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIAST 341 (541)
Q Consensus 262 L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~ 341 (541)
|+.+.+..+...+. ++ -..|+ .+..|+.|++++|.+..-. ..+ .+.+++-.|+|+++ .|. ..-..++.+
T Consensus 80 LRsv~~R~N~LKns--Gi---P~diF-~l~dLt~lDLShNqL~EvP-~~L--E~AKn~iVLNLS~N-~Ie-tIPn~lfin 148 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNS--GI---PTDIF-RLKDLTILDLSHNQLREVP-TNL--EYAKNSIVLNLSYN-NIE-TIPNSLFIN 148 (1255)
T ss_pred hHHHhhhccccccC--CC---Cchhc-ccccceeeecchhhhhhcc-hhh--hhhcCcEEEEcccC-ccc-cCCchHHHh
Confidence 66666665432221 11 12233 5667777777777654321 122 34566777777765 221 122234444
Q ss_pred CCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCC---CCcc
Q 045871 342 YSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDS---NSDE 418 (541)
Q Consensus 342 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~---~~~~ 418 (541)
+..|-+|||++|.+..-- ..+-+. ..|++|.|++. -+....+..+. .+..|+.|+ ++.......+. .++.
T Consensus 149 LtDLLfLDLS~NrLe~LP-PQ~RRL--~~LqtL~Ls~N-PL~hfQLrQLP-smtsL~vLh--ms~TqRTl~N~Ptsld~l 221 (1255)
T KOG0444|consen 149 LTDLLFLDLSNNRLEMLP-PQIRRL--SMLQTLKLSNN-PLNHFQLRQLP-SMTSLSVLH--MSNTQRTLDNIPTSLDDL 221 (1255)
T ss_pred hHhHhhhccccchhhhcC-HHHHHH--hhhhhhhcCCC-hhhHHHHhcCc-cchhhhhhh--cccccchhhcCCCchhhh
Confidence 666778888887554311 112222 36888888883 34333332221 244444554 22222222221 2223
Q ss_pred cccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cHHHHHhcCCCCCeeeccCCCCCCHhHHHhcCCCCcEeccc
Q 045871 419 TCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GLDALCLNCPELNDLNLNSCRNLRPETLLLHCPRLESVHAS 496 (541)
Q Consensus 419 ~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l~~l~~~~~~L~~L~L~~c~~~~d~~l~~~~p~L~~L~l~ 496 (541)
.++..+|++.++ +. ..+..+-++++|+.|+|+++. .+..-....-+|++|+++.+..+.-......+++|+.|.+.
T Consensus 222 ~NL~dvDlS~N~-Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n 299 (1255)
T KOG0444|consen 222 HNLRDVDLSENN-LP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYAN 299 (1255)
T ss_pred hhhhhccccccC-CC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhc
Confidence 346777777543 33 455567788999999999884 33222334567999999988754334555677888877665
Q ss_pred C
Q 045871 497 G 497 (541)
Q Consensus 497 ~ 497 (541)
+
T Consensus 300 ~ 300 (1255)
T KOG0444|consen 300 N 300 (1255)
T ss_pred c
Confidence 5
No 22
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.40 E-value=8.3e-07 Score=96.85 Aligned_cols=157 Identities=18% Similarity=0.291 Sum_probs=102.8
Q ss_pred CccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEeccc
Q 045871 191 ALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISLEFS 270 (541)
Q Consensus 191 ~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~ 270 (541)
+|++|+++|-..+.......+...+|+|++|.+.+- .+..+++..++. ++|||..||+++
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-----~~~~~dF~~lc~--------------sFpNL~sLDIS~- 182 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-----QFDNDDFSQLCA--------------SFPNLRSLDISG- 182 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCc-----eecchhHHHHhh--------------ccCccceeecCC-
Confidence 577777777555555556666667777777777752 233444555544 567777777776
Q ss_pred CCCCCchhHHHHHHHHhcCCCCCCeEEecCcccch-HHHHHHHHhcCCCCCEEEcCCCCCCCHH-HHHH---HHhcCCCc
Q 045871 271 RQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSH-SVVLALTAAGLRGLRMLSLVLGSEITDA-SVAA---IASTYSKL 345 (541)
Q Consensus 271 ~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~-~~~~~l~~~~~~~L~~L~L~~~~~i~d~-~l~~---l~~~~~~L 345 (541)
..+.+ +..++ .+++|+.|.+.+..+.+ ..+..++ ++++|+.||++......+. .+.. ....+|+|
T Consensus 183 TnI~n-------l~GIS-~LknLq~L~mrnLe~e~~~~l~~LF--~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeL 252 (699)
T KOG3665|consen 183 TNISN-------LSGIS-RLKNLQVLSMRNLEFESYQDLIDLF--NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPEL 252 (699)
T ss_pred CCccC-------cHHHh-ccccHHHHhccCCCCCchhhHHHHh--cccCCCeeeccccccccchHHHHHHHHhcccCccc
Confidence 33333 23455 77888888888887765 4455554 6888999998876544443 1222 12347899
Q ss_pred cEEEecCCCCChHHHHHHHhhCCCCccEEeccC
Q 045871 346 ELLDLSGSSISDSGIGMICNVFPNTLSRLLLAL 378 (541)
Q Consensus 346 ~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~ 378 (541)
+.||.+++.++...+..+...- ++|+.+.+-+
T Consensus 253 rfLDcSgTdi~~~~le~ll~sH-~~L~~i~~~~ 284 (699)
T KOG3665|consen 253 RFLDCSGTDINEEILEELLNSH-PNLQQIAALD 284 (699)
T ss_pred cEEecCCcchhHHHHHHHHHhC-ccHhhhhhhh
Confidence 9999999988888888877643 4666665443
No 23
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.39 E-value=6e-06 Score=77.14 Aligned_cols=184 Identities=15% Similarity=0.210 Sum_probs=93.3
Q ss_pred CCCccEEEecCCCCCChhhHHHHhhcC---CCccEEEeeecCCcccccCHHHHHHHHhhCCC-CceeeecCccCCCCcce
Q 045871 189 CSALVRLSLTMESDVDATMLACIAFSC---PNLESMEIYTSGSAVNRITGDELGRFVADKRC-LASLKMEGIFNCPNMRE 264 (541)
Q Consensus 189 ~~~L~~L~L~~~~~~~~~~L~~l~~~~---~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~-L~~L~l~~~~~~~~L~~ 264 (541)
...+.+++|++ ..++.+...++.... .+|+..+++.- ++......+..+++- |+. +..||+|+.
T Consensus 29 ~d~~~evdLSG-NtigtEA~e~l~~~ia~~~~L~vvnfsd~------ftgr~kde~~~~L~~Ll~a-----Llkcp~l~~ 96 (388)
T COG5238 29 MDELVEVDLSG-NTIGTEAMEELCNVIANVRNLRVVNFSDA------FTGRDKDELYSNLVMLLKA-----LLKCPRLQK 96 (388)
T ss_pred hcceeEEeccC-CcccHHHHHHHHHHHhhhcceeEeehhhh------hhcccHHHHHHHHHHHHHH-----HhcCCccee
Confidence 66788888888 455555555554433 56666666641 222111111111111 111 337888888
Q ss_pred EEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHH-------H----hcCCCCCEEEcCCCCCC---
Q 045871 265 ISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALT-------A----AGLRGLRMLSLVLGSEI--- 330 (541)
Q Consensus 265 L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~-------~----~~~~~L~~L~L~~~~~i--- 330 (541)
++|+.+.+... ....+...|+ ....|++|.+.+|.+...+-..+. - +.-|.|+......+ ++
T Consensus 97 v~LSDNAfg~~--~~e~L~d~is-~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rleng 172 (388)
T COG5238 97 VDLSDNAFGSE--FPEELGDLIS-SSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENG 172 (388)
T ss_pred eeccccccCcc--cchHHHHHHh-cCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccC
Confidence 88886443332 1222334444 667788888888865443221111 0 24456666665443 22
Q ss_pred CHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHh----hCCCCccEEeccCCCCCCHHHHHHH
Q 045871 331 TDASVAAIASTYSKLELLDLSGSSISDSGIGMICN----VFPNTLSRLLLALCPNITSSGIQFA 390 (541)
Q Consensus 331 ~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~----~~~~~L~~L~l~~c~~l~~~~l~~l 390 (541)
+..-.....+.-.+|+.+.+.+|.|..+|+.+++- .+ ++|+.|+|+. +.++..+-..+
T Consensus 173 s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~-~~LevLDlqD-Ntft~~gS~~L 234 (388)
T COG5238 173 SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYS-HSLEVLDLQD-NTFTLEGSRYL 234 (388)
T ss_pred cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHh-Ccceeeeccc-cchhhhhHHHH
Confidence 12222333332246677777777777666655432 12 4666666666 34444443333
No 24
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.35 E-value=6.9e-06 Score=76.76 Aligned_cols=208 Identities=18% Similarity=0.254 Sum_probs=131.6
Q ss_pred hHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHH--hcCCCCCEEEcCCC--CCCCHHHHHHH------HhcCCCccE
Q 045871 278 DLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTA--AGLRGLRMLSLVLG--SEITDASVAAI------ASTYSKLEL 347 (541)
Q Consensus 278 ~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~--~~~~~L~~L~L~~~--~~i~d~~l~~l------~~~~~~L~~ 347 (541)
+.+.+++.+. ....++.+++++|.|..++...+.. ++-++|+..+++.- ...-|+-...+ .-.||.|+.
T Consensus 18 Dvk~v~eel~-~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~ 96 (388)
T COG5238 18 DVKGVVEELE-MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQK 96 (388)
T ss_pred hhhHHHHHHH-hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCccee
Confidence 4555566666 5778999999999999988766642 34566777777643 22233322211 234999999
Q ss_pred EEecCCCCChHHHH----HHHhhCCCCccEEeccCCCCCCHHH-------HHHHH-----hcCCCcceecccCCcCCCCC
Q 045871 348 LDLSGSSISDSGIG----MICNVFPNTLSRLLLALCPNITSSG-------IQFAT-----AQLPLLELMDCGMSICDPTS 411 (541)
Q Consensus 348 L~L~~~~i~~~~l~----~l~~~~~~~L~~L~l~~c~~l~~~~-------l~~l~-----~~~~~L~~l~~~~~~~~~~~ 411 (541)
.+|+.|.++..... .|+.. ..|++|.+.+| .+...+ +.+++ +.-|.|+...|+.....|.+
T Consensus 97 v~LSDNAfg~~~~e~L~d~is~~--t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs 173 (388)
T COG5238 97 VDLSDNAFGSEFPEELGDLISSS--TDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS 173 (388)
T ss_pred eeccccccCcccchHHHHHHhcC--CCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc
Confidence 99999977665433 33444 68999999996 454322 22332 44788888877654333332
Q ss_pred CCCCCcccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc----cHHHHH----hcCCCCCeeeccCCCCCCH--h
Q 045871 412 EDSNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS----GLDALC----LNCPELNDLNLNSCRNLRP--E 481 (541)
Q Consensus 412 ~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~----~l~~l~----~~~~~L~~L~L~~c~~~~d--~ 481 (541)
.. .....+....+|+.+.|..+. |+..++ ..|.+|+.|+|..|..... .
T Consensus 174 ~~---------------------~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~ 232 (388)
T COG5238 174 KE---------------------LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSR 232 (388)
T ss_pred HH---------------------HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHH
Confidence 21 223344455688888887762 444332 3588999999988874333 1
Q ss_pred ---HHHhcCCCCcEecccCCccccHHHHHHhHh
Q 045871 482 ---TLLLHCPRLESVHASGCQELLVDTIHSQVK 511 (541)
Q Consensus 482 ---~l~~~~p~L~~L~l~~C~~it~~~i~~~~~ 511 (541)
......+.|+.|.+.+|- ++.+|+..++.
T Consensus 233 ~La~al~~W~~lrEL~lnDCl-ls~~G~~~v~~ 264 (388)
T COG5238 233 YLADALCEWNLLRELRLNDCL-LSNEGVKSVLR 264 (388)
T ss_pred HHHHHhcccchhhhccccchh-hccccHHHHHH
Confidence 223456778999999997 66666666653
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.33 E-value=7e-07 Score=98.00 Aligned_cols=82 Identities=23% Similarity=0.153 Sum_probs=44.7
Q ss_pred cceeecccchhhcHHHHHHHHhCCCccEEEcCCCccHHHHHhcCCCCCeeeccCCCCCCHhHHHhcCCCCcEecccCCcc
Q 045871 421 DFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCSGLDALCLNCPELNDLNLNSCRNLRPETLLLHCPRLESVHASGCQE 500 (541)
Q Consensus 421 l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~l~~~~~~L~~L~L~~c~~~~d~~l~~~~p~L~~L~l~~C~~ 500 (541)
++.|+|+++. +.. +. ...++|+.|+|+++. +..+.....+|+.|++++|...+-..-+..+++|+.|+|++++
T Consensus 384 L~~LdLs~N~-Lt~-LP---~l~s~L~~LdLS~N~-LssIP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~- 456 (788)
T PRK15387 384 LKELIVSGNR-LTS-LP---VLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP- 456 (788)
T ss_pred cceEEecCCc-ccC-CC---CcccCCCEEEccCCc-CCCCCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCC-
Confidence 5666666643 221 11 012467788887774 2222222346777777776632112224567788888888865
Q ss_pred ccHHHHHHh
Q 045871 501 LLVDTIHSQ 509 (541)
Q Consensus 501 it~~~i~~~ 509 (541)
++...+..+
T Consensus 457 Ls~~~~~~L 465 (788)
T PRK15387 457 LSERTLQAL 465 (788)
T ss_pred CCchHHHHH
Confidence 665444433
No 26
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.25 E-value=1.7e-06 Score=57.91 Aligned_cols=37 Identities=38% Similarity=0.754 Sum_probs=34.4
Q ss_pred CCHHHHHHHHhcCChhhHHHHHHHHHHHHHhh--HHHHh
Q 045871 128 LPAAALWEVLRRLPPPGLLAAAQVCKGWRETS--RRLWR 164 (541)
Q Consensus 128 LP~eil~~If~~L~~~~l~~~~~Vck~W~~~~--~~~~~ 164 (541)
||+|++.+||.+|+..|+.++++|||+|+.++ ..+|.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 69999999999999999999999999999999 66665
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.25 E-value=3.1e-07 Score=98.68 Aligned_cols=124 Identities=26% Similarity=0.277 Sum_probs=63.2
Q ss_pred CccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCcccccce
Q 045871 344 KLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDETCDFE 423 (541)
Q Consensus 344 ~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~ 423 (541)
.|+.|.+.+|.++|..+..+-.. ++|+.|+|++ ++++...-..+ .++..|+ +
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~--~hLKVLhLsy-NrL~~fpas~~-~kle~Le------------------------e 411 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNF--KHLKVLHLSY-NRLNSFPASKL-RKLEELE------------------------E 411 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccc--cceeeeeecc-cccccCCHHHH-hchHHhH------------------------H
Confidence 35555666666666666666544 5677777766 33432111111 1122333 4
Q ss_pred eecccchhhcHHHHHHHHhCCCccEEEcCCCc--cHHHHHhcCCCCCeeeccCCCCCCHhHHHhc--CCCCcEecccCCc
Q 045871 424 LQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GLDALCLNCPELNDLNLNSCRNLRPETLLLH--CPRLESVHASGCQ 499 (541)
Q Consensus 424 L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l~~l~~~~~~L~~L~L~~c~~~~d~~l~~~--~p~L~~L~l~~C~ 499 (541)
|.|+++ +++ .+..-+.+++.|++|...++. .+..+. ..++|+.+||+.|. ++...+... .|+|++||++|..
T Consensus 412 L~LSGN-kL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~~-~l~qL~~lDlS~N~-L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 412 LNLSGN-KLT-TLPDTVANLGRLHTLRAHSNQLLSFPELA-QLPQLKVLDLSCNN-LSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred Hhcccc-hhh-hhhHHHHhhhhhHHHhhcCCceeechhhh-hcCcceEEecccch-hhhhhhhhhCCCcccceeeccCCc
Confidence 444442 233 333456666677777666553 333333 46677777776443 433222222 2577777777765
No 28
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.20 E-value=3.8e-07 Score=98.02 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=49.3
Q ss_pred CCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCc
Q 045871 318 GLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLL 397 (541)
Q Consensus 318 ~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L 397 (541)
.|+.|.+.++ .++|..+..+.. +++|+.|+|++|.++.--...+.+. ..|++|+|+| +.++... ..+ ..|+.|
T Consensus 360 ~Lq~LylanN-~Ltd~c~p~l~~-~~hLKVLhLsyNrL~~fpas~~~kl--e~LeeL~LSG-NkL~~Lp-~tv-a~~~~L 432 (1081)
T KOG0618|consen 360 ALQELYLANN-HLTDSCFPVLVN-FKHLKVLHLSYNRLNSFPASKLRKL--EELEELNLSG-NKLTTLP-DTV-ANLGRL 432 (1081)
T ss_pred HHHHHHHhcC-cccccchhhhcc-ccceeeeeecccccccCCHHHHhch--HHhHHHhccc-chhhhhh-HHH-Hhhhhh
Confidence 3555555543 677777765555 8889999999886665444445555 5788888888 5565433 222 347777
Q ss_pred ceec
Q 045871 398 ELMD 401 (541)
Q Consensus 398 ~~l~ 401 (541)
+.|.
T Consensus 433 ~tL~ 436 (1081)
T KOG0618|consen 433 HTLR 436 (1081)
T ss_pred HHHh
Confidence 7774
No 29
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=1.9e-06 Score=77.25 Aligned_cols=106 Identities=22% Similarity=0.332 Sum_probs=90.2
Q ss_pred CCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCC-CCChHHHHHHHhhCCCC
Q 045871 292 RLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGS-SISDSGIGMICNVFPNT 370 (541)
Q Consensus 292 ~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~~ 370 (541)
.++.++-+++.|..+++..+ .+++.++.|.+..|..+.|.++..+....++|+.|+|++| .||+.|+..+.+. ++
T Consensus 102 ~IeaVDAsds~I~~eGle~L--~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l--kn 177 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHL--RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL--KN 177 (221)
T ss_pred eEEEEecCCchHHHHHHHHH--hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh--hh
Confidence 37888889999999998888 5899999999999999999999999999999999999999 9999999999998 89
Q ss_pred ccEEeccCCCCCCHHHH--HHHHhcCCCcceec
Q 045871 371 LSRLLLALCPNITSSGI--QFATAQLPLLELMD 401 (541)
Q Consensus 371 L~~L~l~~c~~l~~~~l--~~l~~~~~~L~~l~ 401 (541)
|+.|.|.+-+.+...+. ..+-..+|++++..
T Consensus 178 Lr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~~ 210 (221)
T KOG3864|consen 178 LRRLHLYDLPYVANLELVQRQLEEALPKCDIVG 210 (221)
T ss_pred hHHHHhcCchhhhchHHHHHHHHHhCcccceec
Confidence 99999998776654332 23334577777663
No 30
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.12 E-value=1.3e-05 Score=87.67 Aligned_cols=141 Identities=16% Similarity=0.235 Sum_probs=85.3
Q ss_pred HHhhcccccccCCCCcchhhHHHHHhhCCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHH
Q 045871 162 LWRAAEELRLRVPPRAQVGFVGSVLQKCSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRF 241 (541)
Q Consensus 162 ~~~~i~~~~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~ 241 (541)
.++..+.+++........++...+...+|+|++|.+.+ ..+....+..+..+.|||..|||+++. +++- .-
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-----I~nl---~G 190 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-----ISNL---SG 190 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-----ccCc---HH
Confidence 34444445555555556678888999999999999999 556555688888899999999999865 4331 22
Q ss_pred HhhCCCCceeeecC-----------ccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHH
Q 045871 242 VADKRCLASLKMEG-----------IFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLA 310 (541)
Q Consensus 242 ~~~~~~L~~L~l~~-----------~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~ 310 (541)
...+++|+.|.|.+ +..+.+|+.||+|.-....+. .+....-..+..+|+|+.|+.++..+..+.+..
T Consensus 191 IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-KIIEQYLECGMVLPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch-HHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence 34456666666554 344555555555542222222 222222233334555555555555555555444
Q ss_pred HH
Q 045871 311 LT 312 (541)
Q Consensus 311 l~ 312 (541)
+.
T Consensus 270 ll 271 (699)
T KOG3665|consen 270 LL 271 (699)
T ss_pred HH
Confidence 43
No 31
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.08 E-value=2.9e-06 Score=59.06 Aligned_cols=39 Identities=41% Similarity=0.714 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhh--HHHHhh
Q 045871 127 GLPAAALWEVLRRLPPPGLLAAAQVCKGWRETS--RRLWRA 165 (541)
Q Consensus 127 ~LP~eil~~If~~L~~~~l~~~~~Vck~W~~~~--~~~~~~ 165 (541)
.||+|++.+||++|+..+++++++|||+|+.++ ...|..
T Consensus 5 ~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~ 45 (48)
T PF00646_consen 5 DLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKK 45 (48)
T ss_dssp HS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHH
T ss_pred HCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHH
Confidence 369999999999999999999999999999999 555543
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.00 E-value=4.7e-06 Score=75.09 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=17.5
Q ss_pred cCCCCCeeeccCCCCCCH----hHHHhcCCCCcEecccCCc
Q 045871 463 NCPELNDLNLNSCRNLRP----ETLLLHCPRLESVHASGCQ 499 (541)
Q Consensus 463 ~~~~L~~L~L~~c~~~~d----~~l~~~~p~L~~L~l~~C~ 499 (541)
.|++|+.|+|.+|+.... ..+...+|+|+.||-....
T Consensus 111 ~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 111 SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred cCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 456666666666553222 3455778888888766544
No 33
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=1.1e-05 Score=76.42 Aligned_cols=132 Identities=16% Similarity=0.193 Sum_probs=96.0
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHH
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAA 337 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~ 337 (541)
.+..+++|||.+ ..+++...+ .+|-..+|.|+.|+++.|.+....- .+- ....+|+.|.|.+ .++++.....
T Consensus 69 ~~~~v~elDL~~-N~iSdWseI----~~ile~lP~l~~LNls~N~L~s~I~-~lp-~p~~nl~~lVLNg-T~L~w~~~~s 140 (418)
T KOG2982|consen 69 SVTDVKELDLTG-NLISDWSEI----GAILEQLPALTTLNLSCNSLSSDIK-SLP-LPLKNLRVLVLNG-TGLSWTQSTS 140 (418)
T ss_pred Hhhhhhhhhccc-chhccHHHH----HHHHhcCccceEeeccCCcCCCccc-cCc-ccccceEEEEEcC-CCCChhhhhh
Confidence 567889999988 555554333 3455589999999999998765431 110 1356899999987 4899999988
Q ss_pred HHhcCCCccEEEecCC-----CCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceec
Q 045871 338 IASTYSKLELLDLSGS-----SISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMD 401 (541)
Q Consensus 338 l~~~~~~L~~L~L~~~-----~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~ 401 (541)
....+|.+++|+++.| .+.+.....+. +.+.+|++..|...-......+.+..|++..+.
T Consensus 141 ~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s----~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS----TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred hhhcchhhhhhhhccchhhhhccccccccccc----hhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 8888999999999887 23444444433 568888888887666667777777788888775
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.90 E-value=3e-06 Score=76.35 Aligned_cols=128 Identities=24% Similarity=0.345 Sum_probs=48.1
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHH
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAA 337 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~ 337 (541)
++.++++|+|.++.. .. ++.++..+.+|+.|++++|.+..-.. + ..++.|+.|+++++ .|++-+ ..
T Consensus 17 n~~~~~~L~L~~n~I-~~-------Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l--~~L~~L~~L~L~~N-~I~~i~-~~ 82 (175)
T PF14580_consen 17 NPVKLRELNLRGNQI-ST-------IENLGATLDKLEVLDLSNNQITKLEG--L--PGLPRLKTLDLSNN-RISSIS-EG 82 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS----S-C-HH
T ss_pred ccccccccccccccc-cc-------ccchhhhhcCCCEEECCCCCCccccC--c--cChhhhhhcccCCC-CCCccc-cc
Confidence 445678888887432 21 23444457789999999998875432 2 45789999999876 555421 12
Q ss_pred HHhcCCCccEEEecCCCCCh-HHHHHHHhhCCCCccEEeccCCCCCCHHH-HHHHHhcCCCcceec
Q 045871 338 IASTYSKLELLDLSGSSISD-SGIGMICNVFPNTLSRLLLALCPNITSSG-IQFATAQLPLLELMD 401 (541)
Q Consensus 338 l~~~~~~L~~L~L~~~~i~~-~~l~~l~~~~~~~L~~L~l~~c~~l~~~~-l~~l~~~~~~L~~l~ 401 (541)
+...+|+|++|+|++|.|.+ ..+..+... ++|+.|++.+.+--.... -..+...+|+|+.||
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l--~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNELEPLSSL--PKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCCGGGGG---TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred hHHhCCcCCEEECcCCcCCChHHhHHHHcC--CCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 33458999999999998876 334555544 689999999854222222 234556799999998
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.85 E-value=1.5e-05 Score=75.45 Aligned_cols=79 Identities=24% Similarity=0.296 Sum_probs=42.1
Q ss_pred CCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCh-HHHHHHHhhC
Q 045871 289 NCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISD-SGIGMICNVF 367 (541)
Q Consensus 289 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~-~~l~~l~~~~ 367 (541)
.+..|++|++++|.|..-.-.. .-.|.++.|+++.+ .|.. +..++. +++|++|||++|.++. +|+..-.
T Consensus 282 TWq~LtelDLS~N~I~~iDESv---KL~Pkir~L~lS~N-~i~~--v~nLa~-L~~L~~LDLS~N~Ls~~~Gwh~KL--- 351 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESV---KLAPKLRRLILSQN-RIRT--VQNLAE-LPQLQLLDLSGNLLAECVGWHLKL--- 351 (490)
T ss_pred hHhhhhhccccccchhhhhhhh---hhccceeEEecccc-ceee--ehhhhh-cccceEeecccchhHhhhhhHhhh---
Confidence 3445777777777654322111 23567777777665 2221 111222 6667777777775554 3332211
Q ss_pred CCCccEEeccC
Q 045871 368 PNTLSRLLLAL 378 (541)
Q Consensus 368 ~~~L~~L~l~~ 378 (541)
.++++|.+++
T Consensus 352 -GNIKtL~La~ 361 (490)
T KOG1259|consen 352 -GNIKTLKLAQ 361 (490)
T ss_pred -cCEeeeehhh
Confidence 4667777666
No 36
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.83 E-value=1.5e-05 Score=87.63 Aligned_cols=195 Identities=21% Similarity=0.142 Sum_probs=107.0
Q ss_pred CCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHH
Q 045871 259 CPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAI 338 (541)
Q Consensus 259 ~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l 338 (541)
.++|++|+|++|. +...+ ...++|+.|++.+|.+..-. ....+|+.|+|.++ .++. +
T Consensus 241 p~~Lk~LdLs~N~-LtsLP----------~lp~sL~~L~Ls~N~L~~Lp------~lp~~L~~L~Ls~N-~Lt~-----L 297 (788)
T PRK15387 241 PPELRTLEVSGNQ-LTSLP----------VLPPGLLELSIFSNPLTHLP------ALPSGLCKLWIFGN-QLTS-----L 297 (788)
T ss_pred CCCCcEEEecCCc-cCccc----------CcccccceeeccCCchhhhh------hchhhcCEEECcCC-cccc-----c
Confidence 3678888887742 22211 12457888888888665321 12456788888765 3442 2
Q ss_pred HhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCcc
Q 045871 339 ASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDE 418 (541)
Q Consensus 339 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~ 418 (541)
....++|++|+|++|.|+.- .. .+.+|+.|.+.+| .++. +.....+|+.|++...... ..+. ..
T Consensus 298 P~~p~~L~~LdLS~N~L~~L--p~----lp~~L~~L~Ls~N-~L~~-----LP~lp~~Lq~LdLS~N~Ls---~LP~-lp 361 (788)
T PRK15387 298 PVLPPGLQELSVSDNQLASL--PA----LPSELCKLWAYNN-QLTS-----LPTLPSGLQELSVSDNQLA---SLPT-LP 361 (788)
T ss_pred cccccccceeECCCCccccC--CC----CcccccccccccC-cccc-----ccccccccceEecCCCccC---CCCC-CC
Confidence 22356788888888876641 11 1246777777774 3432 1111245677764321111 1010 11
Q ss_pred cccceeecccchhhcHHHHHHHHhCCCccEEEcCCCccHHHHHhcCCCCCeeeccCCCCCCHhHHHhcCCCCcEecccCC
Q 045871 419 TCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCSGLDALCLNCPELNDLNLNSCRNLRPETLLLHCPRLESVHASGC 498 (541)
Q Consensus 419 ~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~l~~~~~~L~~L~L~~c~~~~d~~l~~~~p~L~~L~l~~C 498 (541)
..++.|+++++ .+.. +.. ...+|+.|+|+++. +..+....++|+.|++++|...+ +.....+|+.|+++++
T Consensus 362 ~~L~~L~Ls~N-~L~~-LP~---l~~~L~~LdLs~N~-Lt~LP~l~s~L~~LdLS~N~Lss---IP~l~~~L~~L~Ls~N 432 (788)
T PRK15387 362 SELYKLWAYNN-RLTS-LPA---LPSGLKELIVSGNR-LTSLPVLPSELKELMVSGNRLTS---LPMLPSGLLSLSVYRN 432 (788)
T ss_pred cccceehhhcc-cccc-Ccc---cccccceEEecCCc-ccCCCCcccCCCEEEccCCcCCC---CCcchhhhhhhhhccC
Confidence 12456666653 3331 111 13578999998874 32333335689999999987432 2223346888888875
Q ss_pred cccc
Q 045871 499 QELL 502 (541)
Q Consensus 499 ~~it 502 (541)
. ++
T Consensus 433 q-Lt 435 (788)
T PRK15387 433 Q-LT 435 (788)
T ss_pred c-cc
Confidence 4 44
No 37
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=2.3e-05 Score=70.43 Aligned_cols=84 Identities=21% Similarity=0.237 Sum_probs=46.9
Q ss_pred ccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCccccccee
Q 045871 345 LELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDETCDFEL 424 (541)
Q Consensus 345 L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L 424 (541)
++.+|-+++.|..+|+..+... +.|+.|.+.+|.++.|.++..++...++| +.|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l--~~i~~l~l~~ck~~dD~~L~~l~~~~~~L------------------------~~L 156 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDL--RSIKSLSLANCKYFDDWCLERLGGLAPSL------------------------QDL 156 (221)
T ss_pred EEEEecCCchHHHHHHHHHhcc--chhhhheeccccchhhHHHHHhcccccch------------------------hee
Confidence 4555555555555666555555 45566666666666655555554322222 333
Q ss_pred ecccchhhcHHHHHHHHhCCCccEEEcCCC
Q 045871 425 QKAFNNKLHLMYQKLIIKHCCLKKLSLWGC 454 (541)
Q Consensus 425 ~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~ 454 (541)
+|++|++|++.....+.++++|+.|+|.+.
T Consensus 157 ~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 157 DLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred eccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 455555555555556666666666666554
No 38
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=3.1e-05 Score=73.47 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=75.3
Q ss_pred CCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHH-HhhCCCC
Q 045871 292 RLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMI-CNVFPNT 370 (541)
Q Consensus 292 ~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l-~~~~~~~ 370 (541)
-++-|.+.++.|.+.+....++..+..++.|+|.++.--.+..+.+|..++|.|+.|+|+.|.++.. +..+ +.. .+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~--~n 122 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPL--KN 122 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccc--cc
Confidence 3556677778888877777777778888888887763334466777888888888888888866543 2222 222 57
Q ss_pred ccEEeccCCCCCCHHHHHHHHhcCCCcceec
Q 045871 371 LSRLLLALCPNITSSGIQFATAQLPLLELMD 401 (541)
Q Consensus 371 L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~ 401 (541)
|+.|.+.+ .++...........+|.++.++
T Consensus 123 l~~lVLNg-T~L~w~~~~s~l~~lP~vtelH 152 (418)
T KOG2982|consen 123 LRVLVLNG-TGLSWTQSTSSLDDLPKVTELH 152 (418)
T ss_pred eEEEEEcC-CCCChhhhhhhhhcchhhhhhh
Confidence 88888888 5777777777777777777776
No 39
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.70 E-value=0.00011 Score=81.26 Aligned_cols=189 Identities=14% Similarity=0.094 Sum_probs=98.1
Q ss_pred CCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCc
Q 045871 292 RLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTL 371 (541)
Q Consensus 292 ~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L 371 (541)
+|+.|++++|.+..-. .. ...+|+.|+|+++ .++. +.. ..+++|+.|+|++|.++.- ....+.+|
T Consensus 242 ~L~~L~Ls~N~L~~LP-~~----l~s~L~~L~Ls~N-~L~~--LP~--~l~~sL~~L~Ls~N~Lt~L-----P~~lp~sL 306 (754)
T PRK15370 242 TIQEMELSINRITELP-ER----LPSALQSLDLFHN-KISC--LPE--NLPEELRYLSVYDNSIRTL-----PAHLPSGI 306 (754)
T ss_pred cccEEECcCCccCcCC-hh----HhCCCCEEECcCC-ccCc--ccc--ccCCCCcEEECCCCccccC-----cccchhhH
Confidence 5777888777665321 11 1246777777654 4432 110 1134678888877766531 11112356
Q ss_pred cEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCcccccceeecccchhhcHHHHHHHHhCCCccEEEc
Q 045871 372 SRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSL 451 (541)
Q Consensus 372 ~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L 451 (541)
+.|+++++ .++... ..+ .++|+.|++........ ...-..+++.|+|++|. +.. +...+ .++|+.|+|
T Consensus 307 ~~L~Ls~N-~Lt~LP-~~l---~~sL~~L~Ls~N~Lt~L---P~~l~~sL~~L~Ls~N~-L~~-LP~~l--p~~L~~LdL 374 (754)
T PRK15370 307 THLNVQSN-SLTALP-ETL---PPGLKTLEAGENALTSL---PASLPPELQVLDVSKNQ-ITV-LPETL--PPTITTLDV 374 (754)
T ss_pred HHHHhcCC-ccccCC-ccc---cccceeccccCCccccC---ChhhcCcccEEECCCCC-CCc-CChhh--cCCcCEEEC
Confidence 67777663 333110 001 24555554322111000 00001236778888764 331 11111 368899999
Q ss_pred CCCc--cHHHHHhcCCCCCeeeccCCCCCCH----hHHHhcCCCCcEecccCCccccHHHHHHhH
Q 045871 452 WGCS--GLDALCLNCPELNDLNLNSCRNLRP----ETLLLHCPRLESVHASGCQELLVDTIHSQV 510 (541)
Q Consensus 452 ~~~~--~l~~l~~~~~~L~~L~L~~c~~~~d----~~l~~~~p~L~~L~l~~C~~it~~~i~~~~ 510 (541)
.+|. .+..-. ...|+.|++++|....- ..+...++++..|++.+.+ ++...++.+.
T Consensus 375 s~N~Lt~LP~~l--~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np-ls~~tl~~L~ 436 (754)
T PRK15370 375 SRNALTNLPENL--PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP-FSERTIQNMQ 436 (754)
T ss_pred CCCcCCCCCHhH--HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC-ccHHHHHHHH
Confidence 8884 221111 13588888888764321 2334566888999998865 7777777653
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.51 E-value=6e-05 Score=71.57 Aligned_cols=55 Identities=31% Similarity=0.202 Sum_probs=36.8
Q ss_pred cCCCCCEEEcCCCCCCC--HHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccC
Q 045871 315 GLRGLRMLSLVLGSEIT--DASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLAL 378 (541)
Q Consensus 315 ~~~~L~~L~L~~~~~i~--d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~ 378 (541)
.+..|+.|+|+++ .|+ |+++. -.|.++.|++++|+|...+- ++.. .+|+.|++++
T Consensus 282 TWq~LtelDLS~N-~I~~iDESvK----L~Pkir~L~lS~N~i~~v~n--La~L--~~L~~LDLS~ 338 (490)
T KOG1259|consen 282 TWQELTELDLSGN-LITQIDESVK----LAPKLRRLILSQNRIRTVQN--LAEL--PQLQLLDLSG 338 (490)
T ss_pred hHhhhhhcccccc-chhhhhhhhh----hccceeEEeccccceeeehh--hhhc--ccceEeeccc
Confidence 4566888888875 332 23332 36788999999987776443 3333 5788899888
No 41
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.26 E-value=0.00012 Score=72.17 Aligned_cols=224 Identities=21% Similarity=0.172 Sum_probs=122.3
Q ss_pred CCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHH
Q 045871 260 PNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIA 339 (541)
Q Consensus 260 ~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~ 339 (541)
+.-.++.|..+. +.. +-...++.+++|+.|+|++|.|...+..++ .+++.|..|.+.+.++|++-.-..+
T Consensus 67 ~~tveirLdqN~-I~~------iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF--~GL~~l~~Lvlyg~NkI~~l~k~~F- 136 (498)
T KOG4237|consen 67 PETVEIRLDQNQ-ISS------IPPGAFKTLHRLRRLDLSKNNISFIAPDAF--KGLASLLSLVLYGNNKITDLPKGAF- 136 (498)
T ss_pred CcceEEEeccCC-ccc------CChhhccchhhhceecccccchhhcChHhh--hhhHhhhHHHhhcCCchhhhhhhHh-
Confidence 456777776532 222 123344478899999999998766555554 4678888888888778887544333
Q ss_pred hcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHh----cCCCcceecccC--CcCCCCC--
Q 045871 340 STYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATA----QLPLLELMDCGM--SICDPTS-- 411 (541)
Q Consensus 340 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~----~~~~L~~l~~~~--~~~~~~~-- 411 (541)
.++..|+.|.+.-|.+.-.--..+... ++|..|.+.. ..++.+.+ .+..++.+.+.. ..|+-..
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL--~~l~lLslyD------n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDL--PSLSLLSLYD------NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHh--hhcchhcccc------hhhhhhccccccchhccchHhhhcCccccccccch
Confidence 336678888887776655444445444 4566666544 22222222 233333332111 0111000
Q ss_pred ---CCCC--Ccccc-------------------------ccee---ecccchhhcHHHHHHHHhCCCccEEEcCCCc--c
Q 045871 412 ---EDSN--SDETC-------------------------DFEL---QKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--G 456 (541)
Q Consensus 412 ---~~~~--~~~~~-------------------------l~~L---~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~ 456 (541)
+..+ .+..+ ++.+ -.+.|.....--.+.+.++++|++|+|+++. .
T Consensus 209 la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 209 LADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 0000 00000 0111 0111222222334458888999999999884 3
Q ss_pred H-HHHHhcCCCCCeeeccCCCCCCH-hHHHhcCCCCcEecccCCcccc
Q 045871 457 L-DALCLNCPELNDLNLNSCRNLRP-ETLLLHCPRLESVHASGCQELL 502 (541)
Q Consensus 457 l-~~l~~~~~~L~~L~L~~c~~~~d-~~l~~~~p~L~~L~l~~C~~it 502 (541)
+ +..+....+|++|.|..++.-.- ..++.+...|+.|+|++.+ ||
T Consensus 289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~-it 335 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ-IT 335 (498)
T ss_pred hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCe-eE
Confidence 3 23445667788888877763211 4456777888888888743 54
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.22 E-value=0.00027 Score=79.53 Aligned_cols=63 Identities=27% Similarity=0.414 Sum_probs=33.5
Q ss_pred HHhCCCccEEEcCCCccHHHHHh---------cCCCCCeeeccCCCCCCHhHHHhcCCCCcEecccCCcccc
Q 045871 440 IIKHCCLKKLSLWGCSGLDALCL---------NCPELNDLNLNSCRNLRPETLLLHCPRLESVHASGCQELL 502 (541)
Q Consensus 440 l~~~~~L~~L~L~~~~~l~~l~~---------~~~~L~~L~L~~c~~~~d~~l~~~~p~L~~L~l~~C~~it 502 (541)
+..+.+|+.|.+.+|...+.... .++++..+.+.+|....+.......|+|+.|.+..|..+.
T Consensus 713 ~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 713 LGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLE 784 (889)
T ss_pred cccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccc
Confidence 44456666676666643221111 1345555555555555444444556666666666666554
No 43
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.16 E-value=7.1e-05 Score=73.81 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=22.7
Q ss_pred HHhCCCccEEEcCCCc--cHHHHHhcCCCCCeeeccCCCC
Q 045871 440 IIKHCCLKKLSLWGCS--GLDALCLNCPELNDLNLNSCRN 477 (541)
Q Consensus 440 l~~~~~L~~L~L~~~~--~l~~l~~~~~~L~~L~L~~c~~ 477 (541)
+.++.+|++|+|..+. .+..+.++|.+|++|+|.++..
T Consensus 501 l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence 4555666666666553 4445556666666666666653
No 44
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.15 E-value=9.7e-05 Score=72.76 Aligned_cols=89 Identities=20% Similarity=0.083 Sum_probs=40.9
Q ss_pred HhcCCCcceecccCCcCCCCCCCCCCcccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc---cHHHHHhcCCCC
Q 045871 391 TAQLPLLELMDCGMSICDPTSEDSNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS---GLDALCLNCPEL 467 (541)
Q Consensus 391 ~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~---~l~~l~~~~~~L 467 (541)
.+.+++|+.++++....+.+.+........+++|.|.. +++.....+++.++..|+.|+|.++. -....++...+|
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 34466666666443332222222222222235555544 23444444555666666666666653 111222334555
Q ss_pred CeeeccCCCCCCH
Q 045871 468 NDLNLNSCRNLRP 480 (541)
Q Consensus 468 ~~L~L~~c~~~~d 480 (541)
.+|+|-.++.--+
T Consensus 349 ~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 349 STLNLLSNPFNCN 361 (498)
T ss_pred eeeehccCcccCc
Confidence 6666555444333
No 45
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.11 E-value=0.00054 Score=40.59 Aligned_cols=25 Identities=28% Similarity=0.709 Sum_probs=22.2
Q ss_pred CCCCcEecccCCccccHHHHHHhHh
Q 045871 487 CPRLESVHASGCQELLVDTIHSQVK 511 (541)
Q Consensus 487 ~p~L~~L~l~~C~~it~~~i~~~~~ 511 (541)
|++|+.|+|++|+.|||.++..+..
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 7899999999999999999988764
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.08 E-value=9.2e-05 Score=78.17 Aligned_cols=102 Identities=23% Similarity=0.358 Sum_probs=57.7
Q ss_pred CCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHH
Q 045871 259 CPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAI 338 (541)
Q Consensus 259 ~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l 338 (541)
++.|+.|+|+.+ ++.+ ++.|. .|+.|++|+|+.|.+..-.-+... .|. |..|.|.++ .+ ..+..|
T Consensus 186 l~ale~LnLshN-k~~~-------v~~Lr-~l~~LkhLDlsyN~L~~vp~l~~~--gc~-L~~L~lrnN-~l--~tL~gi 250 (1096)
T KOG1859|consen 186 LPALESLNLSHN-KFTK-------VDNLR-RLPKLKHLDLSYNCLRHVPQLSMV--GCK-LQLLNLRNN-AL--TTLRGI 250 (1096)
T ss_pred HHHhhhhccchh-hhhh-------hHHHH-hcccccccccccchhccccccchh--hhh-heeeeeccc-HH--HhhhhH
Confidence 466677777652 2222 22233 677777777777765443333332 344 677776554 22 223333
Q ss_pred HhcCCCccEEEecCCCCChH-HHHHHHhhCCCCccEEeccC
Q 045871 339 ASTYSKLELLDLSGSSISDS-GIGMICNVFPNTLSRLLLAL 378 (541)
Q Consensus 339 ~~~~~~L~~L~L~~~~i~~~-~l~~l~~~~~~~L~~L~l~~ 378 (541)
.+ +.+|+.|||++|-|.+. -+..+... ..|+.|.|.|
T Consensus 251 e~-LksL~~LDlsyNll~~hseL~pLwsL--s~L~~L~LeG 288 (1096)
T KOG1859|consen 251 EN-LKSLYGLDLSYNLLSEHSELEPLWSL--SSLIVLWLEG 288 (1096)
T ss_pred Hh-hhhhhccchhHhhhhcchhhhHHHHH--HHHHHHhhcC
Confidence 33 77888889988866653 34444443 3577777777
No 47
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.06 E-value=0.00026 Score=74.24 Aligned_cols=215 Identities=24% Similarity=0.226 Sum_probs=134.5
Q ss_pred cceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHH--hcC-CCCCEEEcCCCCCCCHHHHHHH
Q 045871 262 MREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTA--AGL-RGLRMLSLVLGSEITDASVAAI 338 (541)
Q Consensus 262 L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~--~~~-~~L~~L~L~~~~~i~d~~l~~l 338 (541)
+..|.|.+|..... +...+...+. ..+.|+.|+++++.+.+++...+.. ... ..|++|.+..| .+++++...+
T Consensus 89 l~~L~L~~~~l~~~--~~~~l~~~l~-t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l 164 (478)
T KOG4308|consen 89 LLHLSLANNRLGDR--GAEELAQALK-TLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPL 164 (478)
T ss_pred HHHhhhhhCccccc--hHHHHHHHhc-ccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHH
Confidence 66777776544433 4555666666 8889999999999999888776643 121 34777888887 6777666555
Q ss_pred Hhc---CCCccEEEecCCCCChHHHHHHHhhC------CCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCC
Q 045871 339 AST---YSKLELLDLSGSSISDSGIGMICNVF------PNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDP 409 (541)
Q Consensus 339 ~~~---~~~L~~L~L~~~~i~~~~l~~l~~~~------~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~ 409 (541)
... +..|+.++++.|.+...|...+.... ..++++|++.+| .+++.....+...+...+...
T Consensus 165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~-------- 235 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLL-------- 235 (478)
T ss_pred HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhh--------
Confidence 432 67788899999977777766554332 247899999997 566666666554444444422
Q ss_pred CCCCCCCcccccceeecccchhhcHHHHH----HHHhC-CCccEEEcCCCc-------cHHHHHhcCCCCCeeeccCCCC
Q 045871 410 TSEDSNSDETCDFELQKAFNNKLHLMYQK----LIIKH-CCLKKLSLWGCS-------GLDALCLNCPELNDLNLNSCRN 477 (541)
Q Consensus 410 ~~~~~~~~~~~l~~L~l~~c~~l~~~~~~----~l~~~-~~L~~L~L~~~~-------~l~~l~~~~~~L~~L~L~~c~~ 477 (541)
.+|++.. +++.+.+.. .+... ..++++++..|+ .+......|+.+++|.++.+..
T Consensus 236 ------------~el~l~~-n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 236 ------------RELDLAS-NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred ------------HHHHHHh-cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 2233333 233333222 22333 567888888884 4455666788999999988874
Q ss_pred CCH--hHH---HhcCCCCcEecccCCcccc
Q 045871 478 LRP--ETL---LLHCPRLESVHASGCQELL 502 (541)
Q Consensus 478 ~~d--~~l---~~~~p~L~~L~l~~C~~it 502 (541)
... ..+ ......+..+.+.++...+
T Consensus 303 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 332 (478)
T KOG4308|consen 303 TDYGVELLLEALERKTPLLHLVLGGTGKGT 332 (478)
T ss_pred ccHHHHHHHHHhhhcccchhhhccccCccc
Confidence 443 111 1334445556666554444
No 48
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.70 E-value=0.00062 Score=71.50 Aligned_cols=192 Identities=19% Similarity=0.259 Sum_probs=116.3
Q ss_pred hhHHHHHhhCCCccEEEecCCCCCChhhHHHHhhcC----CCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC
Q 045871 180 GFVGSVLQKCSALVRLSLTMESDVDATMLACIAFSC----PNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG 255 (541)
Q Consensus 180 ~~l~~l~~~~~~L~~L~L~~~~~~~~~~L~~l~~~~----~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~ 255 (541)
..+...+.....|..|++++ ..+++.+...+.... ..|+.|++..|. ++.++...+...+
T Consensus 105 ~~l~~~l~t~~~L~~L~l~~-n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~-----l~~~g~~~l~~~L---------- 168 (478)
T KOG4308|consen 105 EELAQALKTLPTLGQLDLSG-NNLGDEGARLLCEGLRLPQCLLQTLELVSCS-----LTSEGAAPLAAVL---------- 168 (478)
T ss_pred HHHHHHhcccccHhHhhccc-CCCccHhHHHHHhhcccchHHHHHHHhhccc-----ccccchHHHHHHH----------
Confidence 34555555666788888888 455576666665544 245667777664 6665554444332
Q ss_pred ccCCCCcceEEecccCCCCCchhHHHHHHHHhc---CCCCCCeEEecCcccchHHHHHHHH--hcCCC-CCEEEcCCCCC
Q 045871 256 IFNCPNMREISLEFSRQENDSTDLTTMADGLGR---NCPRLQNIHIASIRLSHSVVLALTA--AGLRG-LRMLSLVLGSE 329 (541)
Q Consensus 256 ~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~---~~~~L~~L~l~~~~i~~~~~~~l~~--~~~~~-L~~L~L~~~~~ 329 (541)
..+..|++++++.|..... +...+...+.. ...++++|++.+|.++......+.. ...+. ++.|++.. ..
T Consensus 169 -~~~~~l~~l~l~~n~l~~~--g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~-n~ 244 (478)
T KOG4308|consen 169 -EKNEHLTELDLSLNGLIEL--GLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS-NK 244 (478)
T ss_pred -hcccchhHHHHHhcccchh--hhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh-cC
Confidence 1345667777776555422 23333344442 4566888888888777655433221 23344 56677764 46
Q ss_pred CCHHHHHHHHhcCC----CccEEEecCCCCChHHHHHHHhhC--CCCccEEeccCCCCCCHHHHHHHHh
Q 045871 330 ITDASVAAIASTYS----KLELLDLSGSSISDSGIGMICNVF--PNTLSRLLLALCPNITSSGIQFATA 392 (541)
Q Consensus 330 i~d~~l~~l~~~~~----~L~~L~L~~~~i~~~~l~~l~~~~--~~~L~~L~l~~c~~l~~~~l~~l~~ 392 (541)
+.|.+++.+...++ .++.|++++|+|++.+...+++.. ...++.|.+.+ +.+++.+...+..
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~-n~l~~~~~~~~~~ 312 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSN-NPLTDYGVELLLE 312 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhccc-CccccHHHHHHHH
Confidence 77777776665443 457888888888887776665542 13788888877 6677766655543
No 49
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.62 E-value=0.015 Score=64.77 Aligned_cols=199 Identities=16% Similarity=0.097 Sum_probs=108.1
Q ss_pred CCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHH
Q 045871 260 PNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIA 339 (541)
Q Consensus 260 ~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~ 339 (541)
++|+.|+|+++... ..+ .. ...+|+.|++++|.+..-. . ...++|+.|+|+++ .++.-. ..+
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP------~~---l~~nL~~L~Ls~N~LtsLP--~---~l~~~L~~L~Ls~N-~L~~LP-~~l- 260 (754)
T PRK15370 199 EQITTLILDNNELK-SLP------EN---LQGNIKTLYANSNQLTSIP--A---TLPDTIQEMELSIN-RITELP-ERL- 260 (754)
T ss_pred cCCcEEEecCCCCC-cCC------hh---hccCCCEEECCCCccccCC--h---hhhccccEEECcCC-ccCcCC-hhH-
Confidence 46888888875332 211 11 2348999999998765321 1 11357899999887 343211 111
Q ss_pred hcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCccc
Q 045871 340 STYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDET 419 (541)
Q Consensus 340 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~ 419 (541)
..+|+.|+|++|.|+. +. ...+.+|+.|+|++| .++... ..+ .+.|+.|++.... ....+.....
T Consensus 261 --~s~L~~L~Ls~N~L~~--LP---~~l~~sL~~L~Ls~N-~Lt~LP-~~l---p~sL~~L~Ls~N~---Lt~LP~~l~~ 325 (754)
T PRK15370 261 --PSALQSLDLFHNKISC--LP---ENLPEELRYLSVYDN-SIRTLP-AHL---PSGITHLNVQSNS---LTALPETLPP 325 (754)
T ss_pred --hCCCCEEECcCCccCc--cc---cccCCCCcEEECCCC-ccccCc-ccc---hhhHHHHHhcCCc---cccCCccccc
Confidence 2479999999887763 11 122258999999985 454211 011 1245555532211 1111111112
Q ss_pred ccceeecccchhhcHHHHHHHHhCCCccEEEcCCCccHHHHHh-cCCCCCeeeccCCCCCCH-hHHHhcCCCCcEecccC
Q 045871 420 CDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCSGLDALCL-NCPELNDLNLNSCRNLRP-ETLLLHCPRLESVHASG 497 (541)
Q Consensus 420 ~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~l~~-~~~~L~~L~L~~c~~~~d-~~l~~~~p~L~~L~l~~ 497 (541)
+++.|++++|. ++. +...+ .++|+.|+|++|. +..+.. -.++|+.|+|++|....- ..+. ..|+.|++++
T Consensus 326 sL~~L~Ls~N~-Lt~-LP~~l--~~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdLs~N~Lt~LP~~l~---~sL~~LdLs~ 397 (754)
T PRK15370 326 GLKTLEAGENA-LTS-LPASL--PPELQVLDVSKNQ-ITVLPETLPPTITTLDVSRNALTNLPENLP---AALQIMQASR 397 (754)
T ss_pred cceeccccCCc-ccc-CChhh--cCcccEEECCCCC-CCcCChhhcCCcCEEECCCCcCCCCCHhHH---HHHHHHhhcc
Confidence 46788888775 231 11111 3688888888874 211111 136788888888863311 2221 3588888888
Q ss_pred Cc
Q 045871 498 CQ 499 (541)
Q Consensus 498 C~ 499 (541)
|.
T Consensus 398 N~ 399 (754)
T PRK15370 398 NN 399 (754)
T ss_pred CC
Confidence 65
No 50
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.31 E-value=0.0039 Score=36.84 Aligned_cols=21 Identities=43% Similarity=0.581 Sum_probs=8.9
Q ss_pred CccEEeccCCCCCCHHHHHHH
Q 045871 370 TLSRLLLALCPNITSSGIQFA 390 (541)
Q Consensus 370 ~L~~L~l~~c~~l~~~~l~~l 390 (541)
+|++|+|++|.+++|.++..+
T Consensus 3 ~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 3 NLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCEeCCCCCCCcCHHHHHHH
Confidence 344444444444444444433
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.18 E-value=0.009 Score=60.83 Aligned_cols=71 Identities=15% Similarity=0.117 Sum_probs=33.7
Q ss_pred CCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCC-CCChHHHHHHHhhC
Q 045871 289 NCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGS-SISDSGIGMICNVF 367 (541)
Q Consensus 289 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~ 367 (541)
.|.+++.|++++|.+..-. .-..+|+.|.+.+|..++... . .-.++|++|++++| .+. ..
T Consensus 50 ~~~~l~~L~Is~c~L~sLP------~LP~sLtsL~Lsnc~nLtsLP--~--~LP~nLe~L~Ls~Cs~L~---------sL 110 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP------VLPNELTEITIENCNNLTTLP--G--SIPEGLEKLTVCHCPEIS---------GL 110 (426)
T ss_pred HhcCCCEEEeCCCCCcccC------CCCCCCcEEEccCCCCcccCC--c--hhhhhhhheEccCccccc---------cc
Confidence 3455666666655433221 112246666666554432110 0 00235677777666 443 12
Q ss_pred CCCccEEeccC
Q 045871 368 PNTLSRLLLAL 378 (541)
Q Consensus 368 ~~~L~~L~l~~ 378 (541)
|..|+.|.+.+
T Consensus 111 P~sLe~L~L~~ 121 (426)
T PRK15386 111 PESVRSLEIKG 121 (426)
T ss_pred ccccceEEeCC
Confidence 35666666653
No 52
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.18 E-value=0.0047 Score=59.25 Aligned_cols=42 Identities=29% Similarity=0.525 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHhcC-----ChhhHHHHHHHHHHHHHhh--HHHHhhcc
Q 045871 126 GGLPAAALWEVLRRL-----PPPGLLAAAQVCKGWRETS--RRLWRAAE 167 (541)
Q Consensus 126 ~~LP~eil~~If~~L-----~~~~l~~~~~Vck~W~~~~--~~~~~~i~ 167 (541)
..||+||++.||..+ +.+++.+++.|||.|+..+ +++|+..-
T Consensus 108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC 156 (366)
T KOG2997|consen 108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC 156 (366)
T ss_pred hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence 678999999999754 5699999999999999999 89998764
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.18 E-value=0.0013 Score=61.72 Aligned_cols=106 Identities=22% Similarity=0.271 Sum_probs=64.4
Q ss_pred CCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCh-HHHHHHHhhCC
Q 045871 290 CPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISD-SGIGMICNVFP 368 (541)
Q Consensus 290 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~-~~l~~l~~~~~ 368 (541)
+..|+.|.+.++.++.-.-+ ..+++|+.|.++.+..-...++..++..+|+|++|++++|.|.+ ..+.-+...
T Consensus 42 ~~~le~ls~~n~gltt~~~~----P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l-- 115 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNF----PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL-- 115 (260)
T ss_pred ccchhhhhhhccceeecccC----CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh--
Confidence 33455555555544332211 34567788887665434445666677777888888888887774 444555555
Q ss_pred CCccEEeccCCCCCCH-HHHHHHHhcCCCcceec
Q 045871 369 NTLSRLLLALCPNITS-SGIQFATAQLPLLELMD 401 (541)
Q Consensus 369 ~~L~~L~l~~c~~l~~-~~l~~l~~~~~~L~~l~ 401 (541)
++|..|++.+|.-..- +.=..++.-+++|.++|
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 6788888888754431 12234555577888876
No 54
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.16 E-value=0.00043 Score=50.76 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=8.7
Q ss_pred CCCCCCeEEecCccc
Q 045871 289 NCPRLQNIHIASIRL 303 (541)
Q Consensus 289 ~~~~L~~L~l~~~~i 303 (541)
.+++|++|++++|.+
T Consensus 23 ~l~~L~~L~l~~N~l 37 (61)
T PF13855_consen 23 NLPNLETLDLSNNNL 37 (61)
T ss_dssp TGTTESEEEETSSSE
T ss_pred CCCCCCEeEccCCcc
Confidence 555666666665544
No 55
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.03 E-value=0.00017 Score=71.17 Aligned_cols=59 Identities=19% Similarity=0.147 Sum_probs=36.8
Q ss_pred HHHhCCCccEEEcCCCc--cH-HHHHhcCCCCCeeeccCCCCCCHhHHHhcCCCCcEecccCCc
Q 045871 439 LIIKHCCLKKLSLWGCS--GL-DALCLNCPELNDLNLNSCRNLRPETLLLHCPRLESVHASGCQ 499 (541)
Q Consensus 439 ~l~~~~~L~~L~L~~~~--~l-~~l~~~~~~L~~L~L~~c~~~~d~~l~~~~p~L~~L~l~~C~ 499 (541)
...++++|..|+|..+. .+ +.++ ...+|++||++++....-..-.++. +|+.|-+-|.+
T Consensus 247 ~~~~L~~l~vLDLRdNklke~Pde~c-lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDNKLKEVPDEIC-LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HhcccccceeeeccccccccCchHHH-HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 34467788888888773 22 2222 3567888888887733222223444 78888888876
No 56
>PLN03150 hypothetical protein; Provisional
Probab=95.91 E-value=0.015 Score=63.82 Aligned_cols=81 Identities=21% Similarity=0.196 Sum_probs=41.3
Q ss_pred CCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCcc
Q 045871 293 LQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLS 372 (541)
Q Consensus 293 L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~ 372 (541)
++.|+|+++.+.......+ ..+++|+.|+|+++ .++...-.. ...+++|+.|+|++|.++......+... .+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i--~~L~~L~~L~Ls~N-~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~~L--~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDI--SKLRHLQSINLSGN-SIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLGQL--TSLR 493 (623)
T ss_pred EEEEECCCCCccccCCHHH--hCCCCCCEEECCCC-cccCcCChH-HhCCCCCCEEECCCCCCCCCCchHHhcC--CCCC
Confidence 5556666665433222222 35666666666654 232211111 2336666666666666655444445444 4666
Q ss_pred EEeccCC
Q 045871 373 RLLLALC 379 (541)
Q Consensus 373 ~L~l~~c 379 (541)
.|+|+++
T Consensus 494 ~L~Ls~N 500 (623)
T PLN03150 494 ILNLNGN 500 (623)
T ss_pred EEECcCC
Confidence 6666663
No 57
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.90 E-value=0.0077 Score=43.98 Aligned_cols=61 Identities=23% Similarity=0.376 Sum_probs=39.2
Q ss_pred CCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCe
Q 045871 216 PNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQN 295 (541)
Q Consensus 216 ~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~ 295 (541)
|+|++|++++|. ++.+.-..+..+++|++|+++++....-. ......+++|++
T Consensus 1 p~L~~L~l~~n~--------------------l~~i~~~~f~~l~~L~~L~l~~N~l~~i~-------~~~f~~l~~L~~ 53 (61)
T PF13855_consen 1 PNLESLDLSNNK--------------------LTEIPPDSFSNLPNLETLDLSNNNLTSIP-------PDAFSNLPNLRY 53 (61)
T ss_dssp TTESEEEETSST--------------------ESEECTTTTTTGTTESEEEETSSSESEEE-------TTTTTTSTTESE
T ss_pred CcCcEEECCCCC--------------------CCccCHHHHcCCCCCCEeEccCCccCccC-------HHHHcCCCCCCE
Confidence 578899998764 22222222456788999999875432211 112338899999
Q ss_pred EEecCccc
Q 045871 296 IHIASIRL 303 (541)
Q Consensus 296 L~l~~~~i 303 (541)
|++++|.+
T Consensus 54 L~l~~N~l 61 (61)
T PF13855_consen 54 LDLSNNNL 61 (61)
T ss_dssp EEETSSSB
T ss_pred EeCcCCcC
Confidence 99998864
No 58
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.85 E-value=0.0054 Score=35.42 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=15.9
Q ss_pred CCCccEEEecCCCCChHHHHHHH
Q 045871 342 YSKLELLDLSGSSISDSGIGMIC 364 (541)
Q Consensus 342 ~~~L~~L~L~~~~i~~~~l~~l~ 364 (541)
|++|++|+|++|.|+++|+..|+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 46788888888888888887776
No 59
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.83 E-value=0.011 Score=66.99 Aligned_cols=107 Identities=24% Similarity=0.273 Sum_probs=65.0
Q ss_pred CCCCCCeEEecCccc-chHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCC--hHHHHHHHh
Q 045871 289 NCPRLQNIHIASIRL-SHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSIS--DSGIGMICN 365 (541)
Q Consensus 289 ~~~~L~~L~l~~~~i-~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~--~~~l~~l~~ 365 (541)
.+++|++|-+.++.. ........+ ..+|.|+.|+|++|..++. +......+-+|++|+|+++.|+ ..|+..+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff-~~m~~LrVLDLs~~~~l~~--LP~~I~~Li~LryL~L~~t~I~~LP~~l~~L-- 617 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFF-RSLPLLRVLDLSGNSSLSK--LPSSIGELVHLRYLDLSDTGISHLPSGLGNL-- 617 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHH-hhCcceEEEECCCCCccCc--CChHHhhhhhhhcccccCCCccccchHHHHH--
Confidence 677888888887742 111111112 4688999999988744432 2222233667999999998877 3444444
Q ss_pred hCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCC
Q 045871 366 VFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMS 405 (541)
Q Consensus 366 ~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~ 405 (541)
.+|.+|++..+..+.. +..+...+.+|+.|.+...
T Consensus 618 ---k~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 618 ---KKLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ---Hhhheecccccccccc--ccchhhhcccccEEEeecc
Confidence 3688888877544322 2334445778888875444
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.32 E-value=0.011 Score=63.04 Aligned_cols=184 Identities=16% Similarity=0.071 Sum_probs=89.4
Q ss_pred HHHHhcCCCCCCeEEecCcccchHH-HHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHH
Q 045871 283 ADGLGRNCPRLQNIHIASIRLSHSV-VLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIG 361 (541)
Q Consensus 283 ~~~l~~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~ 361 (541)
++.|.+.+++++.|.+-...-.+.. .+.++ .++.|++|.|.+|.--+-.|+..+.. .|++|--.+ +-..+.
T Consensus 76 Lq~i~d~lqkt~~lkl~~~pa~~pt~pi~if--pF~sLr~LElrg~~L~~~~GL~~lr~---qLe~LIC~~---Sl~Al~ 147 (1096)
T KOG1859|consen 76 LQRILDFLQKTKVLKLLPSPARDPTEPISIF--PFRSLRVLELRGCDLSTAKGLQELRH---QLEKLICHN---SLDALR 147 (1096)
T ss_pred HHHHHHHHhhheeeeecccCCCCCCCCceec--cccceeeEEecCcchhhhhhhHHHHH---hhhhhhhhc---cHHHHH
Confidence 3344445667777766554322221 34443 57888899888884434445554443 455553222 334455
Q ss_pred HHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCcccccceeecccchhhcHHHHHHHH
Q 045871 362 MICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDETCDFELQKAFNNKLHLMYQKLII 441 (541)
Q Consensus 362 ~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~ 441 (541)
.+...|.... |+......+..+.-.+..|..+|-. ..-...++.|+|+.+. ++. ...+.
T Consensus 148 ~v~ascggd~-------~ns~~Wn~L~~a~fsyN~L~~mD~S-----------Lqll~ale~LnLshNk-~~~--v~~Lr 206 (1096)
T KOG1859|consen 148 HVFASCGGDI-------SNSPVWNKLATASFSYNRLVLMDES-----------LQLLPALESLNLSHNK-FTK--VDNLR 206 (1096)
T ss_pred HHHHHhcccc-------ccchhhhhHhhhhcchhhHHhHHHH-----------HHHHHHhhhhccchhh-hhh--hHHHH
Confidence 5555442110 1222222222111112222222200 0000012445555432 221 22577
Q ss_pred hCCCccEEEcCCCc--cHHHHH-hcCCCCCeeeccCCCCCCHhHHHhcCCCCcEecccC
Q 045871 442 KHCCLKKLSLWGCS--GLDALC-LNCPELNDLNLNSCRNLRPETLLLHCPRLESVHASG 497 (541)
Q Consensus 442 ~~~~L~~L~L~~~~--~l~~l~-~~~~~L~~L~L~~c~~~~d~~l~~~~p~L~~L~l~~ 497 (541)
.|+.|++|+|+.+. .+..+. ..|. |+.|+|++|..-+-.. +.++.+|+.||++.
T Consensus 207 ~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~g-ie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 207 RLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRG-IENLKSLYGLDLSY 263 (1096)
T ss_pred hcccccccccccchhccccccchhhhh-heeeeecccHHHhhhh-HHhhhhhhccchhH
Confidence 78889999988763 222222 2355 8888998876322122 35678888888875
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=0.0061 Score=57.76 Aligned_cols=113 Identities=21% Similarity=0.275 Sum_probs=69.9
Q ss_pred CCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEecc
Q 045871 190 SALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISLEF 269 (541)
Q Consensus 190 ~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~ 269 (541)
.++++|+++|| .++|.. +....+.||.|.|+ +|.|+. |+. +..|.+|++|.|..
T Consensus 19 ~~vkKLNcwg~-~L~DIs---ic~kMp~lEVLsLS-----vNkIss------------L~p-----l~rCtrLkElYLRk 72 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDIS---ICEKMPLLEVLSLS-----VNKISS------------LAP-----LQRCTRLKELYLRK 72 (388)
T ss_pred HHhhhhcccCC-CccHHH---HHHhcccceeEEee-----cccccc------------chh-----HHHHHHHHHHHHHh
Confidence 36788999996 455433 34566889999988 345544 221 23678888888875
Q ss_pred cCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHH---HHHHHHhcCCCCCEEEcCCCCCCCHHHHHH
Q 045871 270 SRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSV---VLALTAAGLRGLRMLSLVLGSEITDASVAA 337 (541)
Q Consensus 270 ~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~---~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~ 337 (541)
+.... +.+ ++.+. ++|+|+.|.|..|.....+ ....+...+|+|+.|+ +..++.+.+..
T Consensus 73 N~I~s----ldE-L~YLk-nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD---nv~VteeEle~ 134 (388)
T KOG2123|consen 73 NCIES----LDE-LEYLK-NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD---NVPVTEEELEE 134 (388)
T ss_pred ccccc----HHH-HHHHh-cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc---CccccHHHHHH
Confidence 33222 222 44555 8899999999887544332 3333346788888887 34566655443
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.21 E-value=0.01 Score=55.90 Aligned_cols=16 Identities=13% Similarity=0.492 Sum_probs=9.0
Q ss_pred CCCCCCeEEecCcccc
Q 045871 289 NCPRLQNIHIASIRLS 304 (541)
Q Consensus 289 ~~~~L~~L~l~~~~i~ 304 (541)
.+|+|++|.+++|.+.
T Consensus 89 ~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNKIK 104 (260)
T ss_pred hCCceeEEeecCCccc
Confidence 4556666666555544
No 63
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.12 E-value=0.00033 Score=61.30 Aligned_cols=152 Identities=18% Similarity=0.305 Sum_probs=82.9
Q ss_pred ccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHH
Q 045871 256 IFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASV 335 (541)
Q Consensus 256 ~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l 335 (541)
+....+++.|.|+.+....-.+++ + .+.+|+.|++.++++.+-.. .+ ..++.|+.|++.-. .+. .+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppni-------a-~l~nlevln~~nnqie~lp~-~i--ssl~klr~lnvgmn-rl~--~l 94 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNI-------A-ELKNLEVLNLSNNQIEELPT-SI--SSLPKLRILNVGMN-RLN--IL 94 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcH-------H-HhhhhhhhhcccchhhhcCh-hh--hhchhhhheecchh-hhh--cC
Confidence 345677888888874332222222 2 44588999999888765432 22 35788888887421 111 01
Q ss_pred HHHHhcCCCccEEEecCCCCChHHHHH-HHhhCCCCccEEeccCCCCCCHHHHHHHH---hcCCCcceecccCCcCCCCC
Q 045871 336 AAIASTYSKLELLDLSGSSISDSGIGM-ICNVFPNTLSRLLLALCPNITSSGIQFAT---AQLPLLELMDCGMSICDPTS 411 (541)
Q Consensus 336 ~~l~~~~~~L~~L~L~~~~i~~~~l~~-l~~~~~~~L~~L~l~~c~~l~~~~l~~l~---~~~~~L~~l~~~~~~~~~~~ 411 (541)
..-+..+|.|+.|||.+|.++...+.. +.-. ..|+.|.++. ..++.+. ..+++|++|.+..
T Consensus 95 prgfgs~p~levldltynnl~e~~lpgnff~m--~tlralyl~d------ndfe~lp~dvg~lt~lqil~lrd------- 159 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNNLNENSLPGNFFYM--TTLRALYLGD------NDFEILPPDVGKLTNLQILSLRD------- 159 (264)
T ss_pred ccccCCCchhhhhhccccccccccCCcchhHH--HHHHHHHhcC------CCcccCChhhhhhcceeEEeecc-------
Confidence 111234788999999988777654321 1111 3455555544 2222221 2355566554211
Q ss_pred CCCCCcccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc
Q 045871 412 EDSNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS 455 (541)
Q Consensus 412 ~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 455 (541)
..-+ ++.+.++.+..|++|++.|+.
T Consensus 160 -----------------ndll--~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 160 -----------------NDLL--SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred -----------------Cchh--hCcHHHHHHHHHHHHhcccce
Confidence 1111 445567778888888888873
No 64
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.12 E-value=0.026 Score=54.66 Aligned_cols=40 Identities=30% Similarity=0.545 Sum_probs=36.7
Q ss_pred CCC----HHHHHHHHhcCChhhHHHHHHHHHHHHHhh--HHHHhhc
Q 045871 127 GLP----AAALWEVLRRLPPPGLLAAAQVCKGWRETS--RRLWRAA 166 (541)
Q Consensus 127 ~LP----~eil~~If~~L~~~~l~~~~~Vck~W~~~~--~~~~~~i 166 (541)
.|| ++|-+.||+||+..+++.|-+|||+|+.+. +.+|+..
T Consensus 77 ~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkL 122 (499)
T KOG0281|consen 77 ALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKL 122 (499)
T ss_pred hcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 489 999999999999999999999999999999 7788754
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.06 E-value=0.021 Score=54.29 Aligned_cols=35 Identities=31% Similarity=0.315 Sum_probs=15.8
Q ss_pred CCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCC
Q 045871 318 GLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSIS 356 (541)
Q Consensus 318 ~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~ 356 (541)
+.+.|+.+|| +++|-. |+..++.||.|.|+-|.|+
T Consensus 20 ~vkKLNcwg~-~L~DIs---ic~kMp~lEVLsLSvNkIs 54 (388)
T KOG2123|consen 20 NVKKLNCWGC-GLDDIS---ICEKMPLLEVLSLSVNKIS 54 (388)
T ss_pred HhhhhcccCC-CccHHH---HHHhcccceeEEeeccccc
Confidence 3444555444 344322 2233455555555555444
No 66
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.85 E-value=0.03 Score=37.83 Aligned_cols=15 Identities=47% Similarity=0.618 Sum_probs=6.9
Q ss_pred CCCccEEEecCCCCC
Q 045871 342 YSKLELLDLSGSSIS 356 (541)
Q Consensus 342 ~~~L~~L~L~~~~i~ 356 (541)
+++|+.|++++|.|+
T Consensus 23 l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 23 LPNLETLNLSNNPIS 37 (44)
T ss_dssp CTTSSEEEETSSCCS
T ss_pred CCCCCEEEecCCCCC
Confidence 444444444444443
No 67
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.84 E-value=0.047 Score=55.76 Aligned_cols=53 Identities=23% Similarity=0.181 Sum_probs=31.6
Q ss_pred CCccEEEcCCCccH--HHHH-hcCCCCCeeeccCCCCCCHhHHHhcCCCCcEecccCC
Q 045871 444 CCLKKLSLWGCSGL--DALC-LNCPELNDLNLNSCRNLRPETLLLHCPRLESVHASGC 498 (541)
Q Consensus 444 ~~L~~L~L~~~~~l--~~l~-~~~~~L~~L~L~~c~~~~d~~l~~~~p~L~~L~l~~C 498 (541)
++|+.|.+.+.... ..+. .-.++|+.|++.+|..+... .....+|+.|+++.+
T Consensus 132 ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP--~~LP~SLk~L~ls~n 187 (426)
T PRK15386 132 NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILP--EKLPESLQSITLHIE 187 (426)
T ss_pred chHhheeccccccccccccccccCCcccEEEecCCCcccCc--ccccccCcEEEeccc
Confidence 36778877543211 1111 12468999999999865211 113357999998765
No 68
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=94.77 E-value=0.00068 Score=59.40 Aligned_cols=146 Identities=22% Similarity=0.249 Sum_probs=77.7
Q ss_pred cCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCC--HHHHHHHHh
Q 045871 315 GLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNIT--SSGIQFATA 392 (541)
Q Consensus 315 ~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~--~~~l~~l~~ 392 (541)
...+++.|.|++. +++--. ..|+. +.+|+.|++++|.|.+- ...+.+. ++|+.|+++- +.+. ..|+ .
T Consensus 31 ~~s~ITrLtLSHN-Kl~~vp-pnia~-l~nlevln~~nnqie~l-p~~issl--~klr~lnvgm-nrl~~lprgf----g 99 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVVP-PNIAE-LKNLEVLNLSNNQIEEL-PTSISSL--PKLRILNVGM-NRLNILPRGF----G 99 (264)
T ss_pred chhhhhhhhcccC-ceeecC-CcHHH-hhhhhhhhcccchhhhc-Chhhhhc--hhhhheecch-hhhhcCcccc----C
Confidence 3456777788775 333211 11333 77899999999887653 2234444 6888888875 3221 1222 2
Q ss_pred cCCCcceecccCCcCCCCCCCCCC-cccc---cceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cHHHHHhcCCC
Q 045871 393 QLPLLELMDCGMSICDPTSEDSNS-DETC---DFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GLDALCLNCPE 466 (541)
Q Consensus 393 ~~~~L~~l~~~~~~~~~~~~~~~~-~~~~---l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l~~l~~~~~~ 466 (541)
.+|.|+.||+.. .|....... .++. ++.|.++... .+.+..-++++.+|+.|.+..+. .+..-.....+
T Consensus 100 s~p~levldlty---nnl~e~~lpgnff~m~tlralyl~dnd--fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~ 174 (264)
T KOG0617|consen 100 SFPALEVLDLTY---NNLNENSLPGNFFYMTTLRALYLGDND--FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTR 174 (264)
T ss_pred CCchhhhhhccc---cccccccCCcchhHHHHHHHHHhcCCC--cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHH
Confidence 367788887422 222222211 1222 2333333321 12333445666777777777664 22333345667
Q ss_pred CCeeeccCCC
Q 045871 467 LNDLNLNSCR 476 (541)
Q Consensus 467 L~~L~L~~c~ 476 (541)
|++|.+.+++
T Consensus 175 lrelhiqgnr 184 (264)
T KOG0617|consen 175 LRELHIQGNR 184 (264)
T ss_pred HHHHhcccce
Confidence 7777777765
No 69
>PLN03150 hypothetical protein; Provisional
Probab=94.63 E-value=0.037 Score=60.81 Aligned_cols=65 Identities=20% Similarity=0.388 Sum_probs=28.6
Q ss_pred CCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCh
Q 045871 289 NCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISD 357 (541)
Q Consensus 289 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~ 357 (541)
.+++|+.|+|++|.+.......+ ..+++|+.|+|+++ .++...-..+. .+++|++|+|++|.++.
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP~~~--~~l~~L~~LdLs~N-~lsg~iP~~l~-~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIPPSL--GSITSLEVLDLSYN-SFNGSIPESLG-QLTSLRILNLNGNSLSG 504 (623)
T ss_pred CCCCCCEEECCCCcccCcCChHH--hCCCCCCEEECCCC-CCCCCCchHHh-cCCCCCEEECcCCcccc
Confidence 44555555555554433221122 24555555555544 22221111222 25555555555554443
No 70
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=94.38 E-value=0.039 Score=55.59 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=35.1
Q ss_pred CCCCCCcCCCCCHHHHHHHHhcCC-hhhHHHHHHHHHHHHHhhHH
Q 045871 118 LDPDPELSGGLPAAALWEVLRRLP-PPGLLAAAQVCKGWRETSRR 161 (541)
Q Consensus 118 ~~~~~l~~~~LP~eil~~If~~L~-~~~l~~~~~Vck~W~~~~~~ 161 (541)
++|.++ |+|++..|..+|+ ..|+.+.+.||+.||..+..
T Consensus 2 ~~Ws~L-----p~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTL-----PEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhC-----CHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 478777 9999999999997 88999999999999998843
No 71
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=93.85 E-value=0.084 Score=31.73 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=20.8
Q ss_pred CCccEEEecCCCCChHHHHHHHhh
Q 045871 343 SKLELLDLSGSSISDSGIGMICNV 366 (541)
Q Consensus 343 ~~L~~L~L~~~~i~~~~l~~l~~~ 366 (541)
++|++|||++|.|+++|...+++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 578999999999999999988864
No 72
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.79 E-value=0.053 Score=56.14 Aligned_cols=102 Identities=25% Similarity=0.370 Sum_probs=53.9
Q ss_pred CCCcceEEecccCCCCCchhHHHHHHHHhcCC-CCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHH
Q 045871 259 CPNMREISLEFSRQENDSTDLTTMADGLGRNC-PRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAA 337 (541)
Q Consensus 259 ~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~-~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~ 337 (541)
.+.++.|++.+. .+++.... +. .. ++|+.|+++++.+.+.. ..+ ..+++|+.|+++.+ .+++...
T Consensus 115 ~~~l~~L~l~~n-~i~~i~~~------~~-~~~~nL~~L~l~~N~i~~l~-~~~--~~l~~L~~L~l~~N-~l~~l~~-- 180 (394)
T COG4886 115 LTNLTSLDLDNN-NITDIPPL------IG-LLKSNLKELDLSDNKIESLP-SPL--RNLPNLKNLDLSFN-DLSDLPK-- 180 (394)
T ss_pred ccceeEEecCCc-ccccCccc------cc-cchhhcccccccccchhhhh-hhh--hccccccccccCCc-hhhhhhh--
Confidence 356777777652 23222111 11 33 27788888777765541 011 46777777777765 3333221
Q ss_pred HHhcCCCccEEEecCCCCChHHHHH-HHhhCCCCccEEeccC
Q 045871 338 IASTYSKLELLDLSGSSISDSGIGM-ICNVFPNTLSRLLLAL 378 (541)
Q Consensus 338 l~~~~~~L~~L~L~~~~i~~~~l~~-l~~~~~~~L~~L~l~~ 378 (541)
.....++|+.|+++++.+++--... .. ..|++|.+++
T Consensus 181 ~~~~~~~L~~L~ls~N~i~~l~~~~~~~----~~L~~l~~~~ 218 (394)
T COG4886 181 LLSNLSNLNNLDLSGNKISDLPPEIELL----SALEELDLSN 218 (394)
T ss_pred hhhhhhhhhheeccCCccccCchhhhhh----hhhhhhhhcC
Confidence 1113667777777777665532211 11 2466666666
No 73
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.34 E-value=0.09 Score=47.78 Aligned_cols=87 Identities=16% Similarity=0.183 Sum_probs=47.9
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHH-HHH
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDA-SVA 336 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~-~l~ 336 (541)
..++|..|.|.++....-.+ .+...+|+|..|.+.+|++..-+-..-. +.||.|+.|.+.++ .+++. ..+
T Consensus 62 ~l~rL~tLll~nNrIt~I~p-------~L~~~~p~l~~L~LtnNsi~~l~dl~pL-a~~p~L~~Ltll~N-pv~~k~~YR 132 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDP-------DLDTFLPNLKTLILTNNSIQELGDLDPL-ASCPKLEYLTLLGN-PVEHKKNYR 132 (233)
T ss_pred CccccceEEecCCcceeecc-------chhhhccccceEEecCcchhhhhhcchh-ccCCccceeeecCC-chhcccCce
Confidence 44677777777633222122 2333677788888888876554432222 46777777777665 22221 111
Q ss_pred -HHHhcCCCccEEEecCC
Q 045871 337 -AIASTYSKLELLDLSGS 353 (541)
Q Consensus 337 -~l~~~~~~L~~L~L~~~ 353 (541)
.+...+|+|+.||+.+-
T Consensus 133 ~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 133 LYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eEEEEecCcceEeehhhh
Confidence 12223677777777663
No 74
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=92.91 E-value=0.16 Score=34.32 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=19.2
Q ss_pred CCCCeeeccCCCCCCH-hHHHhcCCCCcEecccCCc
Q 045871 465 PELNDLNLNSCRNLRP-ETLLLHCPRLESVHASGCQ 499 (541)
Q Consensus 465 ~~L~~L~L~~c~~~~d-~~l~~~~p~L~~L~l~~C~ 499 (541)
++|++|++++|. +++ ...+..+++|+.|++++|+
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCC
Confidence 356666666665 333 3334567777777777664
No 75
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.35 E-value=0.069 Score=48.51 Aligned_cols=105 Identities=22% Similarity=0.288 Sum_probs=66.6
Q ss_pred CCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCH-HHHHHH
Q 045871 260 PNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITD-ASVAAI 338 (541)
Q Consensus 260 ~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d-~~l~~l 338 (541)
.....+||+.+...... .+ ..+++|..|.+.+|.|+.-... + ...+++|..|.|.++ .|-. ..+..+
T Consensus 42 d~~d~iDLtdNdl~~l~--------~l-p~l~rL~tLll~nNrIt~I~p~-L-~~~~p~l~~L~LtnN-si~~l~dl~pL 109 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD--------NL-PHLPRLHTLLLNNNRITRIDPD-L-DTFLPNLKTLILTNN-SIQELGDLDPL 109 (233)
T ss_pred cccceecccccchhhcc--------cC-CCccccceEEecCCcceeeccc-h-hhhccccceEEecCc-chhhhhhcchh
Confidence 34566777764433221 12 2678899999999988654311 1 134788999999875 3433 223444
Q ss_pred HhcCCCccEEEecCCCCChHH-HHH--HHhhCCCCccEEeccCC
Q 045871 339 ASTYSKLELLDLSGSSISDSG-IGM--ICNVFPNTLSRLLLALC 379 (541)
Q Consensus 339 ~~~~~~L~~L~L~~~~i~~~~-l~~--l~~~~~~~L~~L~l~~c 379 (541)
+. ||.|++|.+-+|.+++.. .+. +.+. ++|+.|++++-
T Consensus 110 a~-~p~L~~Ltll~Npv~~k~~YR~yvl~kl--p~l~~LDF~kV 150 (233)
T KOG1644|consen 110 AS-CPKLEYLTLLGNPVEHKKNYRLYVLYKL--PSLRTLDFQKV 150 (233)
T ss_pred cc-CCccceeeecCCchhcccCceeEEEEec--CcceEeehhhh
Confidence 44 999999999998877743 222 2233 68999988774
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.36 E-value=0.29 Score=28.00 Aligned_cols=21 Identities=19% Similarity=0.426 Sum_probs=11.8
Q ss_pred CCCCeEEecCcccchHHHHHH
Q 045871 291 PRLQNIHIASIRLSHSVVLAL 311 (541)
Q Consensus 291 ~~L~~L~l~~~~i~~~~~~~l 311 (541)
++|++|+|++|.++++++.++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 456666666666666665544
No 77
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=87.55 E-value=0.67 Score=47.88 Aligned_cols=36 Identities=31% Similarity=0.303 Sum_probs=18.0
Q ss_pred CCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCC
Q 045871 289 NCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLG 327 (541)
Q Consensus 289 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~ 327 (541)
.+++|+.|++++|.+.+-..... ..+.|+.|++++.
T Consensus 161 ~l~~L~~L~l~~N~l~~l~~~~~---~~~~L~~L~ls~N 196 (394)
T COG4886 161 NLPNLKNLDLSFNDLSDLPKLLS---NLSNLNNLDLSGN 196 (394)
T ss_pred ccccccccccCCchhhhhhhhhh---hhhhhhheeccCC
Confidence 55556666666555544332210 3455555555543
No 78
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=85.18 E-value=0.41 Score=40.94 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=17.3
Q ss_pred CccEEEecCCCCC--hHHHHHHHhhCCCCccEEeccC
Q 045871 344 KLELLDLSGSSIS--DSGIGMICNVFPNTLSRLLLAL 378 (541)
Q Consensus 344 ~L~~L~L~~~~i~--~~~l~~l~~~~~~~L~~L~l~~ 378 (541)
.+..|||+.|.+. ...+.++... ..|+.++|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~--~el~~i~ls~ 62 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKG--YELTKISLSD 62 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCC--ceEEEEeccc
Confidence 3555666666443 2344555544 4566666555
No 79
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=84.03 E-value=1.6 Score=46.95 Aligned_cols=42 Identities=31% Similarity=0.570 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhh---HHHHhhcc
Q 045871 126 GGLPAAALWEVLRRLPPPGLLAAAQVCKGWRETS---RRLWRAAE 167 (541)
Q Consensus 126 ~~LP~eil~~If~~L~~~~l~~~~~Vck~W~~~~---~~~~~~i~ 167 (541)
..||.|+...||.+|+.++++.+++||+.|+.++ ...|+...
T Consensus 109 ~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~ 153 (537)
T KOG0274|consen 109 SLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCR 153 (537)
T ss_pred hcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhh
Confidence 5699999999999999999999999999999999 55565443
No 80
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=80.18 E-value=0.64 Score=48.48 Aligned_cols=85 Identities=26% Similarity=0.373 Sum_probs=51.6
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHH
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAA 337 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~ 337 (541)
.+++|++|++++ ..+.+..+ +. .++.|+.|++.+|.+.+..-+ ..++.|+.+++.++ .+++..-..
T Consensus 116 ~~~~L~~L~ls~-N~I~~i~~-------l~-~l~~L~~L~l~~N~i~~~~~~----~~l~~L~~l~l~~n-~i~~ie~~~ 181 (414)
T KOG0531|consen 116 SLVNLQVLDLSF-NKITKLEG-------LS-TLTLLKELNLSGNLISDISGL----ESLKSLKLLDLSYN-RIVDIENDE 181 (414)
T ss_pred hhhcchheeccc-cccccccc-------hh-hccchhhheeccCcchhccCC----ccchhhhcccCCcc-hhhhhhhhh
Confidence 568888888887 33333222 22 455688888888877654422 23677788887765 333222101
Q ss_pred HHhcCCCccEEEecCCCCCh
Q 045871 338 IASTYSKLELLDLSGSSISD 357 (541)
Q Consensus 338 l~~~~~~L~~L~L~~~~i~~ 357 (541)
...+.+|+.+++.++.|..
T Consensus 182 -~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 182 -LSELISLEELDLGGNSIRE 200 (414)
T ss_pred -hhhccchHHHhccCCchhc
Confidence 2447788888888875543
No 81
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=79.71 E-value=0.6 Score=48.71 Aligned_cols=103 Identities=21% Similarity=0.222 Sum_probs=67.2
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHH-HhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHH
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADG-LGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVA 336 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~-l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~ 336 (541)
.+.+|+.|++..+ .+.. +.. +. .+++|++|++++|.|.+..-. ..++.|+.|++.++ .|++. .
T Consensus 93 ~~~~l~~l~l~~n-~i~~-------i~~~l~-~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N-~i~~~--~ 156 (414)
T KOG0531|consen 93 KLKSLEALDLYDN-KIEK-------IENLLS-SLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSGN-LISDI--S 156 (414)
T ss_pred cccceeeeecccc-chhh-------cccchh-hhhcchheeccccccccccch----hhccchhhheeccC-cchhc--c
Confidence 4577888888763 2221 112 23 688999999999998775433 24566999999886 34321 1
Q ss_pred HHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCC
Q 045871 337 AIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALC 379 (541)
Q Consensus 337 ~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c 379 (541)
.+ ..+++|+.+++++|.+++..-..+... .+|+.+.+.+.
T Consensus 157 ~~-~~l~~L~~l~l~~n~i~~ie~~~~~~~--~~l~~l~l~~n 196 (414)
T KOG0531|consen 157 GL-ESLKSLKLLDLSYNRIVDIENDELSEL--ISLEELDLGGN 196 (414)
T ss_pred CC-ccchhhhcccCCcchhhhhhhhhhhhc--cchHHHhccCC
Confidence 11 127889999999998776443112222 47888888884
No 82
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=78.82 E-value=1.4 Score=22.90 Aligned_cols=12 Identities=42% Similarity=0.631 Sum_probs=4.8
Q ss_pred CccEEEecCCCC
Q 045871 344 KLELLDLSGSSI 355 (541)
Q Consensus 344 ~L~~L~L~~~~i 355 (541)
+|+.|+|++|.+
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 455555555543
No 83
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=77.98 E-value=1.1 Score=38.37 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=18.9
Q ss_pred CCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCC
Q 045871 289 NCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLG 327 (541)
Q Consensus 289 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~ 327 (541)
.+|.++.|+++++.+.+-... + +.++.|+.|++..+
T Consensus 75 kf~t~t~lNl~~neisdvPeE-~--Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 75 KFPTATTLNLANNEISDVPEE-L--AAMPALRSLNLRFN 110 (177)
T ss_pred ccchhhhhhcchhhhhhchHH-H--hhhHHhhhcccccC
Confidence 455666666666655544332 2 23555555555443
No 84
>PF13013 F-box-like_2: F-box-like domain
Probab=76.52 E-value=7.3 Score=32.02 Aligned_cols=39 Identities=26% Similarity=0.439 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhHHHHh
Q 045871 126 GGLPAAALWEVLRRLPPPGLLAAAQVCKGWRETSRRLWR 164 (541)
Q Consensus 126 ~~LP~eil~~If~~L~~~~l~~~~~Vck~W~~~~~~~~~ 164 (541)
..||.||+..||.+....++......|+..+..-...|.
T Consensus 23 ~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~~~~ 61 (109)
T PF13013_consen 23 LDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDHIWY 61 (109)
T ss_pred hhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 446999999999999999998888888743333333443
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=76.27 E-value=3.2 Score=24.74 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=13.1
Q ss_pred CCCCeEEecCcccchHHHHHH
Q 045871 291 PRLQNIHIASIRLSHSVVLAL 311 (541)
Q Consensus 291 ~~L~~L~l~~~~i~~~~~~~l 311 (541)
++|++|+|++|.+.+++..++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 356666666666666665554
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.14 E-value=6.6 Score=41.40 Aligned_cols=13 Identities=15% Similarity=0.465 Sum_probs=5.6
Q ss_pred CCCCCCeEEecCc
Q 045871 289 NCPRLQNIHIASI 301 (541)
Q Consensus 289 ~~~~L~~L~l~~~ 301 (541)
..|+|+.|+|++|
T Consensus 242 ~apklk~L~LS~N 254 (585)
T KOG3763|consen 242 IAPKLKTLDLSHN 254 (585)
T ss_pred hcchhheeecccc
Confidence 3444444444444
No 87
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=68.54 E-value=9.3 Score=36.39 Aligned_cols=47 Identities=26% Similarity=0.434 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHhcCC-hhhHHHHHHHHHHHHHhh--HHHHhhccccccc
Q 045871 126 GGLPAAALWEVLRRLP-PPGLLAAAQVCKGWRETS--RRLWRAAEELRLR 172 (541)
Q Consensus 126 ~~LP~eil~~If~~L~-~~~l~~~~~Vck~W~~~~--~~~~~~i~~~~l~ 172 (541)
..||.|++..|+.+++ .+|+..+++|-.....+. ..+|+....++|+
T Consensus 203 ~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~ 252 (332)
T KOG3926|consen 203 HDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFN 252 (332)
T ss_pred ccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 6789999999999998 999999999987777777 8899988777765
No 88
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=67.99 E-value=2.6 Score=40.25 Aligned_cols=15 Identities=60% Similarity=1.088 Sum_probs=12.3
Q ss_pred CCcccCCCCCCCCCCCc
Q 045871 31 RGSYNCGRCGQPKKGHS 47 (541)
Q Consensus 31 ~~~~~~~~~~~~~~~~~ 47 (541)
-+.|-|||||| |||-
T Consensus 174 PpgY~CyRCGq--kgHw 188 (427)
T COG5222 174 PPGYVCYRCGQ--KGHW 188 (427)
T ss_pred CCceeEEecCC--CCch
Confidence 46899999998 6774
No 89
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=64.72 E-value=2.9 Score=23.28 Aligned_cols=13 Identities=54% Similarity=0.922 Sum_probs=8.0
Q ss_pred CccEEEecCCCCC
Q 045871 344 KLELLDLSGSSIS 356 (541)
Q Consensus 344 ~L~~L~L~~~~i~ 356 (541)
+|++|||++|.|+
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4666777666554
No 90
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=58.34 E-value=6.2 Score=24.45 Aligned_cols=18 Identities=56% Similarity=0.977 Sum_probs=13.7
Q ss_pred CCCCcccCCCCCCCCCCCcc
Q 045871 29 KRRGSYNCGRCGQPKKGHSC 48 (541)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~ 48 (541)
+.-..|-|.+|++ +||.-
T Consensus 4 ~pP~~Y~C~~C~~--~GH~i 21 (32)
T PF13696_consen 4 KPPPGYVCHRCGQ--KGHWI 21 (32)
T ss_pred CCCCCCEeecCCC--CCccH
Confidence 4567899999998 45753
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.39 E-value=23 Score=37.59 Aligned_cols=34 Identities=12% Similarity=0.068 Sum_probs=16.1
Q ss_pred CCCCCeEEecCcccchHH-----HHHHHHhcCCCCCEEE
Q 045871 290 CPRLQNIHIASIRLSHSV-----VLALTAAGLRGLRMLS 323 (541)
Q Consensus 290 ~~~L~~L~l~~~~i~~~~-----~~~l~~~~~~~L~~L~ 323 (541)
...|++|-+.+|.+.+.- ....+...+|.|..|+
T Consensus 269 ~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 269 GLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred CCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 344666666666543321 1111224566665555
No 92
>PHA00616 hypothetical protein
Probab=49.84 E-value=4.3 Score=27.24 Aligned_cols=13 Identities=38% Similarity=0.813 Sum_probs=10.9
Q ss_pred cccCCCCCCCCCC
Q 045871 33 SYNCGRCGQPKKG 45 (541)
Q Consensus 33 ~~~~~~~~~~~~~ 45 (541)
||.|.+||..|..
T Consensus 1 pYqC~~CG~~F~~ 13 (44)
T PHA00616 1 MYQCLRCGGIFRK 13 (44)
T ss_pred CCccchhhHHHhh
Confidence 6999999998764
No 93
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=46.01 E-value=16 Score=20.94 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=9.6
Q ss_pred CCccEEEecCCCCCh
Q 045871 343 SKLELLDLSGSSISD 357 (541)
Q Consensus 343 ~~L~~L~L~~~~i~~ 357 (541)
++|++|+|++|.|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 467777777765543
No 94
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=46.01 E-value=16 Score=20.94 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=9.6
Q ss_pred CCccEEEecCCCCCh
Q 045871 343 SKLELLDLSGSSISD 357 (541)
Q Consensus 343 ~~L~~L~L~~~~i~~ 357 (541)
++|++|+|++|.|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 467777777765543
No 95
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=44.95 E-value=18 Score=21.20 Aligned_cols=14 Identities=50% Similarity=0.622 Sum_probs=10.0
Q ss_pred CCccEEEecCCCCC
Q 045871 343 SKLELLDLSGSSIS 356 (541)
Q Consensus 343 ~~L~~L~L~~~~i~ 356 (541)
.+|+.|+|++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46777888777664
No 96
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=44.01 E-value=70 Score=31.82 Aligned_cols=91 Identities=18% Similarity=0.190 Sum_probs=53.9
Q ss_pred ChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEecccCCCCCchhHHHHH
Q 045871 204 DATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISLEFSRQENDSTDLTTMA 283 (541)
Q Consensus 204 ~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~ 283 (541)
.+..+..+-..-++|+.++|+.- ..|+...+..|...+++= ...+...+.+ ...++. -..+++
T Consensus 186 ~e~~leri~~nd~~l~evnlnn~----~~ip~e~lk~~~eal~~n-----------t~vk~Fsla~-tr~~d~-vA~a~a 248 (353)
T KOG3735|consen 186 VESSLERIKENDTGLTEVNLNNI----RRIPIETLKQFSEALKNN-----------THVKKFSLAN-TRSSDP-VAFAIA 248 (353)
T ss_pred HHHHHHHHhcCCCCceeeecccc----ccCCHHHHHHHHHHHhcC-----------chhhhhhhhc-ccCCch-hHHHHH
Confidence 34556666666688888888873 367777777766553332 2233333433 333332 122233
Q ss_pred HHHhcCCCCCCeEEecCcccchHHHHHHH
Q 045871 284 DGLGRNCPRLQNIHIASIRLSHSVVLALT 312 (541)
Q Consensus 284 ~~l~~~~~~L~~L~l~~~~i~~~~~~~l~ 312 (541)
..+. .++.|++|+++++.|+..++.++.
T Consensus 249 ~ml~-~n~sl~slnvesnFItg~gi~a~~ 276 (353)
T KOG3735|consen 249 EMLK-ENKSLTSLNVESNFITGLGIMALL 276 (353)
T ss_pred HHHh-hcchhhheeccccccccHHHHHHH
Confidence 3333 777788888888888777777664
No 97
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=42.40 E-value=1.9e+02 Score=33.95 Aligned_cols=11 Identities=55% Similarity=0.963 Sum_probs=4.7
Q ss_pred CCCCCCCCCCC
Q 045871 9 PHVSPSSTDYS 19 (541)
Q Consensus 9 ~~~~~~~~~~~ 19 (541)
|+..||+|+|+
T Consensus 1457 p~ysptsp~ys 1467 (1605)
T KOG0260|consen 1457 PNYSPTSPSYS 1467 (1605)
T ss_pred CCCCCCCCccC
Confidence 44444444443
No 98
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=41.77 E-value=16 Score=35.97 Aligned_cols=24 Identities=25% Similarity=0.606 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCC
Q 045871 18 YSSFDFNLRPSKRRGSYNCGRCGQ 41 (541)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~ 41 (541)
-..|-++.-+.+.||++|||.|-.
T Consensus 284 ~~i~sdp~G~gs~RGphNc~~cd~ 307 (358)
T COG1244 284 LRILSDPVGAGSDRGPHNCGKCDK 307 (358)
T ss_pred CceeecCCCCCCCCCCcccchhcH
Confidence 456667777889999999998875
No 99
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=39.87 E-value=38 Score=33.64 Aligned_cols=102 Identities=16% Similarity=0.224 Sum_probs=61.4
Q ss_pred hHHHHHHHHhcCCCCCCeEEecCcc-cchHHHHHHHH--hcCCCCCEEEcCCCCCCCH---HHHHHHHhcCCCccEEEec
Q 045871 278 DLTTMADGLGRNCPRLQNIHIASIR-LSHSVVLALTA--AGLRGLRMLSLVLGSEITD---ASVAAIASTYSKLELLDLS 351 (541)
Q Consensus 278 ~l~~l~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~--~~~~~L~~L~L~~~~~i~d---~~l~~l~~~~~~L~~L~L~ 351 (541)
++...++.+...=+.|+..+|.+.. |....+..+.. ......+...|.+. ..+| .++..+...++.|++|++.
T Consensus 185 ~~e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~~n~sl~slnve 263 (353)
T KOG3735|consen 185 DVESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLKENKSLTSLNVE 263 (353)
T ss_pred hHHHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHhhcchhhheecc
Confidence 3444456666666778888877764 33333322221 23344555555543 3444 3344445568899999999
Q ss_pred CCCCChHHHHHHHhhC--CCCccEEeccCCC
Q 045871 352 GSSISDSGIGMICNVF--PNTLSRLLLALCP 380 (541)
Q Consensus 352 ~~~i~~~~l~~l~~~~--~~~L~~L~l~~c~ 380 (541)
+|.||..|+..+.... ...|..|.+.+-.
T Consensus 264 snFItg~gi~a~~~al~~n~tl~el~~dnqr 294 (353)
T KOG3735|consen 264 SNFITGLGIMALLRALQSNKSLTELKNDNQR 294 (353)
T ss_pred ccccccHHHHHHHHHHhccchhhHhhhhhHH
Confidence 9999999988776554 2467777666543
No 100
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=37.47 E-value=26 Score=20.45 Aligned_cols=11 Identities=27% Similarity=0.685 Sum_probs=4.6
Q ss_pred CCeEEecCccc
Q 045871 293 LQNIHIASIRL 303 (541)
Q Consensus 293 L~~L~l~~~~i 303 (541)
|++|+|.+..+
T Consensus 2 LKtL~L~~v~f 12 (26)
T PF07723_consen 2 LKTLHLDSVVF 12 (26)
T ss_pred CeEEEeeEEEE
Confidence 34444444443
No 101
>PF05022 SRP40_C: SRP40, C-terminal domain; InterPro: IPR007718 This presumed domain is found at the C terminus of the Saccharomyces cerevisiae SRP40 protein P32583 from SWISSPROT and its homologues. SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III.
Probab=35.43 E-value=18 Score=27.18 Aligned_cols=13 Identities=46% Similarity=0.800 Sum_probs=10.2
Q ss_pred CCCCCCCCcccCC
Q 045871 25 LRPSKRRGSYNCG 37 (541)
Q Consensus 25 ~~~~~~~~~~~~~ 37 (541)
-..||+||+|++|
T Consensus 49 EK~KkKRgsy~GG 61 (72)
T PF05022_consen 49 EKNKKKRGSYRGG 61 (72)
T ss_pred cccccccccccCC
Confidence 4567999999874
No 102
>PF04060 FeS: Putative Fe-S cluster; InterPro: IPR007202 These proteins contain a domain with four conserved cysteines that probably form an Fe-S redox cluster.; GO: 0051536 iron-sulfur cluster binding; PDB: 2YCL_A 4DJF_E 4DJD_C 4DJE_C.
Probab=33.34 E-value=19 Score=22.80 Aligned_cols=11 Identities=55% Similarity=1.277 Sum_probs=4.7
Q ss_pred CcccCCCCCCC
Q 045871 32 GSYNCGRCGQP 42 (541)
Q Consensus 32 ~~~~~~~~~~~ 42 (541)
+-+|||.||.+
T Consensus 3 P~~nCg~CG~~ 13 (35)
T PF04060_consen 3 PGTNCGACGYP 13 (35)
T ss_dssp -S----TTSSS
T ss_pred CCCcCCCCCCc
Confidence 45799999984
No 103
>COG0199 RpsN Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]
Probab=32.99 E-value=26 Score=25.38 Aligned_cols=21 Identities=43% Similarity=0.925 Sum_probs=15.5
Q ss_pred CCCCCC-CCCCcccCCCCCCCC
Q 045871 23 FNLRPS-KRRGSYNCGRCGQPK 43 (541)
Q Consensus 23 ~~~~~~-~~~~~~~~~~~~~~~ 43 (541)
..|+++ ++|+.=+|-+||.|-
T Consensus 10 ~~p~~~~~~r~~nRC~~cGRpr 31 (61)
T COG0199 10 ALPRPKSPGRGRNRCRRCGRPR 31 (61)
T ss_pred cCCCCCccccccccccccCCCc
Confidence 344554 678888999999864
No 104
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=31.98 E-value=1.8e+02 Score=32.34 Aligned_cols=7 Identities=14% Similarity=0.601 Sum_probs=3.0
Q ss_pred HHHhhcc
Q 045871 161 RLWRAAE 167 (541)
Q Consensus 161 ~~~~~i~ 167 (541)
.+|..+.
T Consensus 643 cFWvkv~ 649 (1102)
T KOG1924|consen 643 CFWVKVN 649 (1102)
T ss_pred ceeeecc
Confidence 3444443
No 105
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=28.64 E-value=28 Score=34.71 Aligned_cols=19 Identities=32% Similarity=0.768 Sum_probs=14.8
Q ss_pred CCCCCCCCCCcccCCCCCC
Q 045871 23 FNLRPSKRRGSYNCGRCGQ 41 (541)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~ 41 (541)
++.-..+.|||||||.|-.
T Consensus 252 d~~g~~~~rg~~nc~~c~~ 270 (313)
T TIGR01210 252 DPVGAGSDRGAHNCGKCDK 270 (313)
T ss_pred cCCCCCCcCCCcCcchhhH
Confidence 4555558899999999965
No 106
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=28.38 E-value=22 Score=37.95 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=57.1
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHH
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAA 337 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~ 337 (541)
..+.|..|+.+.|...+- ...++ .+..|+.|.+..|++.+-. ..+ .+=.|.+|+++ |++|+.-.+
T Consensus 164 ~~~tl~~ld~s~nei~sl-------psql~-~l~slr~l~vrRn~l~~lp-~El---~~LpLi~lDfS-cNkis~iPv-- 228 (722)
T KOG0532|consen 164 LLPTLAHLDVSKNEIQSL-------PSQLG-YLTSLRDLNVRRNHLEDLP-EEL---CSLPLIRLDFS-CNKISYLPV-- 228 (722)
T ss_pred cchhHHHhhhhhhhhhhc-------hHHhh-hHHHHHHHHHhhhhhhhCC-HHH---hCCceeeeecc-cCceeecch--
Confidence 346677777776543322 22333 4556777777777554322 111 13357788876 445653222
Q ss_pred HHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCC
Q 045871 338 IASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALC 379 (541)
Q Consensus 338 l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c 379 (541)
-+..+..|++|.|.+|.+..--..-..+..-.=.++|+++.|
T Consensus 229 ~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 233477888888888866654333332221123456666666
No 107
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=27.69 E-value=55 Score=26.11 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=20.4
Q ss_pred CCCCCcCCCCCHHHHHHHHhcCChhhHHH
Q 045871 119 DPDPELSGGLPAAALWEVLRRLPPPGLLA 147 (541)
Q Consensus 119 ~~~~l~~~~LP~eil~~If~~L~~~~l~~ 147 (541)
.|..+ |.||...|+++|+-.|+..
T Consensus 71 ~w~~L-----P~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 71 YWNIL-----PIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred chhhC-----CHHHHHHHHHcCCHHHHHH
Confidence 57666 9999999999999988654
No 108
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=27.63 E-value=43 Score=17.67 Aligned_cols=12 Identities=42% Similarity=1.052 Sum_probs=7.1
Q ss_pred cCCCCCCCCCCCcc
Q 045871 35 NCGRCGQPKKGHSC 48 (541)
Q Consensus 35 ~~~~~~~~~~~~~~ 48 (541)
.|+.||+ .||..
T Consensus 2 ~C~~C~~--~GH~~ 13 (18)
T PF00098_consen 2 KCFNCGE--PGHIA 13 (18)
T ss_dssp BCTTTSC--SSSCG
T ss_pred cCcCCCC--cCccc
Confidence 4677766 45653
No 109
>KOG2500 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.99 E-value=3.2e+02 Score=25.54 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=12.0
Q ss_pred CCCCCcccCCCCCCCCCC
Q 045871 28 SKRRGSYNCGRCGQPKKG 45 (541)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~ 45 (541)
+|+.|.--.-|=|+||+|
T Consensus 166 tkk~g~~s~pr~~~gk~g 183 (253)
T KOG2500|consen 166 TKKKGAASWPRTGPGKGG 183 (253)
T ss_pred ccccccccccccCCCCCc
Confidence 455666666677788855
No 110
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=23.97 E-value=29 Score=24.84 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=24.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCC
Q 045871 4 NRQHQPHVSPSSTDYSSFDFNLRPSKRRGSYNCGRCGQPK 43 (541)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (541)
-+||+-|-||=..--=-....-|..+.--..||++|.++.
T Consensus 19 H~QHvRH~PPw~~RpWV~t~~gR~~~lG~~l~C~kCd~~~ 58 (61)
T PF12088_consen 19 HTQHVRHDPPWQNRPWVLTEEGRQSMLGQELNCKKCDRGA 58 (61)
T ss_pred ccccccCCCCCcccCcEEcHHHHHHhcCCeecccccccCC
Confidence 3688889888544222222223444555678999998865
No 111
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=23.90 E-value=35 Score=22.94 Aligned_cols=12 Identities=42% Similarity=1.187 Sum_probs=9.6
Q ss_pred cccCCCCCCCCC
Q 045871 33 SYNCGRCGQPKK 44 (541)
Q Consensus 33 ~~~~~~~~~~~~ 44 (541)
.|.|+.||..+.
T Consensus 2 ~Y~C~~Cg~~~~ 13 (44)
T smart00659 2 IYICGECGRENE 13 (44)
T ss_pred EEECCCCCCEee
Confidence 599999998554
No 112
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.46 E-value=39 Score=22.94 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=16.5
Q ss_pred CCCCCCCCCcccCCCCCCCCC
Q 045871 24 NLRPSKRRGSYNCGRCGQPKK 44 (541)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~ 44 (541)
..|||...+.--|.+|+.||.
T Consensus 3 ~~r~Ka~lp~KICpvCqRPFs 23 (54)
T COG4338 3 ARRPKATLPDKICPVCQRPFS 23 (54)
T ss_pred ccCcccccchhhhhhhcCchH
Confidence 367777778888999999874
No 113
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=22.38 E-value=38 Score=21.03 Aligned_cols=10 Identities=50% Similarity=1.305 Sum_probs=7.4
Q ss_pred ccCCCCCCCC
Q 045871 34 YNCGRCGQPK 43 (541)
Q Consensus 34 ~~~~~~~~~~ 43 (541)
|.|+.||...
T Consensus 1 Y~C~~Cg~~~ 10 (32)
T PF03604_consen 1 YICGECGAEV 10 (32)
T ss_dssp EBESSSSSSE
T ss_pred CCCCcCCCee
Confidence 7788888743
No 114
>PHA00687 hypothetical protein
Probab=20.65 E-value=17 Score=24.12 Aligned_cols=17 Identities=24% Similarity=0.571 Sum_probs=10.3
Q ss_pred cccccccce--ecCCCCCC
Q 045871 525 RSADGSKRI--RVPHSFSQ 541 (541)
Q Consensus 525 ~~~~~~~~~--~~~~~~~~ 541 (541)
.+.....|| |+||||.+
T Consensus 38 aiekatervkrqyphffke 56 (56)
T PHA00687 38 AIEKATERVKRQYPHFFKE 56 (56)
T ss_pred HHHHHHHHHHHhcchhhcC
Confidence 344445555 68888864
Done!