Query 045871
Match_columns 541
No_of_seqs 319 out of 2817
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 10:49:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045871.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045871hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 100.0 2.1E-30 7.2E-35 281.4 26.0 374 126-511 14-535 (592)
2 2p1m_B Transport inhibitor res 100.0 5.3E-30 1.8E-34 278.3 27.4 366 127-510 8-527 (594)
3 2ast_B S-phase kinase-associat 99.9 3.6E-26 1.2E-30 230.1 15.9 266 128-480 12-285 (336)
4 3ogk_B Coronatine-insensitive 99.9 4.9E-22 1.7E-26 215.5 21.4 318 180-511 63-510 (592)
5 2p1m_B Transport inhibitor res 99.9 3.7E-21 1.3E-25 208.6 22.9 224 259-497 288-540 (594)
6 1z7x_W Ribonuclease inhibitor; 99.9 5.3E-20 1.8E-24 193.1 24.5 317 181-510 47-419 (461)
7 1z7x_W Ribonuclease inhibitor; 99.8 1.2E-19 4E-24 190.5 25.6 304 180-499 71-438 (461)
8 2ast_B S-phase kinase-associat 99.8 8E-17 2.7E-21 161.6 24.1 236 216-510 47-292 (336)
9 2ca6_A RAN GTPase-activating p 99.7 6.6E-17 2.3E-21 165.7 21.4 36 464-499 273-314 (386)
10 2ca6_A RAN GTPase-activating p 99.7 5.3E-16 1.8E-20 158.9 22.2 270 182-496 24-338 (386)
11 4fmz_A Internalin; leucine ric 99.7 7E-16 2.4E-20 155.5 19.0 272 186-499 62-344 (347)
12 4fmz_A Internalin; leucine ric 99.6 7.6E-15 2.6E-19 147.9 18.0 272 188-502 42-324 (347)
13 3v47_A TOLL-like receptor 5B a 99.6 4.4E-16 1.5E-20 163.0 4.1 155 342-499 211-406 (455)
14 3goz_A Leucine-rich repeat-con 99.6 4E-14 1.4E-18 143.6 16.2 92 291-384 109-210 (362)
15 1o6v_A Internalin A; bacterial 99.6 5.5E-14 1.9E-18 147.6 17.2 57 441-499 328-386 (466)
16 1o6v_A Internalin A; bacterial 99.5 7.3E-14 2.5E-18 146.7 16.2 269 186-499 86-364 (466)
17 3goz_A Leucine-rich repeat-con 99.5 3.1E-13 1E-17 137.1 19.0 204 181-391 13-246 (362)
18 2id5_A Lingo-1, leucine rich r 99.5 6.4E-16 2.2E-20 162.9 -2.0 296 191-510 33-342 (477)
19 3v47_A TOLL-like receptor 5B a 99.5 9E-15 3.1E-19 153.0 6.3 291 190-499 30-382 (455)
20 3rgz_A Protein brassinosteroid 99.5 9.5E-16 3.3E-20 171.1 -1.5 291 188-499 198-525 (768)
21 2z7x_B TOLL-like receptor 1, v 99.5 4.4E-13 1.5E-17 142.7 15.4 160 340-506 321-486 (520)
22 3rgz_A Protein brassinosteroid 99.4 1.4E-14 4.7E-19 161.7 1.7 290 186-499 219-549 (768)
23 2id5_A Lingo-1, leucine rich r 99.4 1.6E-14 5.6E-19 152.1 2.1 262 216-499 32-307 (477)
24 3o6n_A APL1; leucine-rich repe 99.4 7.1E-14 2.4E-18 143.2 5.1 292 189-511 44-361 (390)
25 2z81_A CD282 antigen, TOLL-lik 99.4 2.2E-12 7.5E-17 138.1 16.8 153 340-501 331-510 (549)
26 3e4g_A ATP synthase subunit S, 99.4 2.4E-13 8.3E-18 121.1 7.2 106 291-400 61-172 (176)
27 3t6q_A CD180 antigen; protein- 99.4 7.4E-15 2.5E-19 159.4 -3.4 286 191-500 255-559 (606)
28 3t6q_A CD180 antigen; protein- 99.4 2.2E-14 7.7E-19 155.6 -0.1 228 256-499 274-511 (606)
29 3oja_B Anopheles plasmodium-re 99.4 6.1E-13 2.1E-17 144.1 10.3 287 184-511 69-367 (597)
30 3un9_A NLR family member X1; l 99.4 8.2E-12 2.8E-16 126.7 17.3 162 291-480 72-253 (372)
31 2z81_A CD282 antigen, TOLL-lik 99.4 4.5E-13 1.5E-17 143.5 8.4 103 188-304 48-161 (549)
32 4eco_A Uncharacterized protein 99.4 3.9E-14 1.3E-18 154.6 -0.1 191 188-402 247-464 (636)
33 4ecn_A Leucine-rich repeat pro 99.4 1.8E-13 6.1E-18 152.9 4.9 287 188-499 489-817 (876)
34 1ziw_A TOLL-like receptor 3; i 99.4 2.6E-13 9E-18 149.3 5.3 36 441-476 326-364 (680)
35 2z7x_B TOLL-like receptor 1, v 99.4 6.3E-12 2.1E-16 133.7 15.6 123 370-498 303-431 (520)
36 2z63_A TOLL-like receptor 4, v 99.4 5E-14 1.7E-18 151.6 -0.9 180 315-499 345-529 (570)
37 1ziw_A TOLL-like receptor 3; i 99.3 9.2E-13 3.2E-17 144.9 8.8 79 420-499 273-364 (680)
38 3un9_A NLR family member X1; l 99.3 1.9E-11 6.4E-16 124.1 17.3 179 190-392 72-261 (372)
39 3vq2_A TLR4, TOLL-like recepto 99.3 5.7E-14 2E-18 152.4 -1.5 261 213-501 282-558 (606)
40 3o53_A Protein LRIM1, AGAP0063 99.3 9.3E-14 3.2E-18 138.2 -2.1 174 290-501 98-275 (317)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 4.8E-12 1.6E-16 136.1 11.0 155 340-501 350-510 (562)
42 3vq2_A TLR4, TOLL-like recepto 99.3 3.7E-13 1.3E-17 146.1 2.2 241 242-502 281-534 (606)
43 3bz5_A Internalin-J, INLJ; leu 99.3 1.1E-12 3.9E-17 137.1 5.3 267 187-502 61-352 (457)
44 2z80_A TOLL-like receptor 2, v 99.3 2.1E-12 7.3E-17 130.3 6.5 205 289-501 74-314 (353)
45 3bz5_A Internalin-J, INLJ; leu 99.3 9E-12 3.1E-16 130.2 11.3 263 188-499 40-329 (457)
46 3oja_B Anopheles plasmodium-re 99.3 9.5E-13 3.3E-17 142.6 3.4 274 189-499 50-335 (597)
47 3j0a_A TOLL-like receptor 5; m 99.3 1.4E-13 4.9E-18 155.1 -3.6 125 190-327 24-158 (844)
48 3zyj_A Leucine-rich repeat-con 99.2 3.7E-13 1.3E-17 140.2 -1.6 223 260-499 64-290 (440)
49 4eco_A Uncharacterized protein 99.2 2.7E-13 9.3E-18 147.9 -3.0 289 186-499 269-598 (636)
50 3o6n_A APL1; leucine-rich repe 99.2 3.5E-13 1.2E-17 138.0 -2.2 255 215-499 44-329 (390)
51 2z80_A TOLL-like receptor 2, v 99.2 4.3E-12 1.5E-16 128.0 5.2 256 190-480 52-316 (353)
52 1xku_A Decorin; proteoglycan, 99.2 7.6E-12 2.6E-16 125.0 6.8 81 291-379 121-202 (330)
53 1xku_A Decorin; proteoglycan, 99.2 5.4E-12 1.8E-16 126.1 5.5 219 260-499 52-274 (330)
54 4ecn_A Leucine-rich repeat pro 99.2 2.2E-12 7.6E-17 144.1 2.8 243 244-499 489-764 (876)
55 2z63_A TOLL-like receptor 4, v 99.2 7.8E-13 2.7E-17 142.2 -1.2 175 315-499 323-505 (570)
56 3zyi_A Leucine-rich repeat-con 99.2 9.1E-13 3.1E-17 137.8 -1.0 223 260-499 75-301 (452)
57 1ogq_A PGIP-2, polygalacturona 99.2 2.6E-13 8.9E-18 134.7 -6.3 133 216-379 50-184 (313)
58 2ft3_A Biglycan; proteoglycan, 99.2 3E-12 1E-16 128.0 1.4 60 440-499 237-305 (332)
59 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 9.8E-11 3.3E-15 125.8 12.8 35 420-454 378-413 (562)
60 4glp_A Monocyte differentiatio 99.2 1.1E-11 3.7E-16 122.7 4.6 56 444-502 251-307 (310)
61 2z66_A Variable lymphocyte rec 99.2 4.1E-13 1.4E-17 132.7 -6.0 206 258-500 50-260 (306)
62 3g06_A SSPH2 (leucine-rich rep 99.2 1.5E-10 5E-15 125.1 13.4 204 258-507 99-302 (622)
63 3oja_A Leucine-rich immune mol 99.2 1E-11 3.4E-16 131.0 3.9 146 213-402 31-176 (487)
64 3j0a_A TOLL-like receptor 5; m 99.1 9.2E-12 3.1E-16 140.3 2.6 265 215-499 23-349 (844)
65 4fcg_A Uncharacterized protein 99.1 6.6E-12 2.3E-16 125.4 0.9 220 189-497 80-310 (328)
66 3o53_A Protein LRIM1, AGAP0063 99.1 4.5E-12 1.5E-16 126.0 -0.9 240 180-475 24-272 (317)
67 4fcg_A Uncharacterized protein 99.1 3.5E-12 1.2E-16 127.4 -1.8 200 259-502 80-291 (328)
68 1ozn_A Reticulon 4 receptor; N 99.1 6.3E-12 2.2E-16 122.8 -0.2 204 259-501 31-238 (285)
69 1ogq_A PGIP-2, polygalacturona 99.1 1.1E-12 3.9E-17 130.1 -5.6 223 260-499 50-279 (313)
70 3zyj_A Leucine-rich repeat-con 99.1 9.5E-12 3.3E-16 129.5 0.5 218 216-480 64-294 (440)
71 3e4g_A ATP synthase subunit S, 99.1 6E-11 2.1E-15 105.6 5.5 80 317-400 61-144 (176)
72 3oja_A Leucine-rich immune mol 99.1 3.5E-12 1.2E-16 134.5 -3.3 237 185-495 29-269 (487)
73 2ft3_A Biglycan; proteoglycan, 99.1 9.1E-12 3.1E-16 124.5 -0.2 31 191-227 34-65 (332)
74 1ozn_A Reticulon 4 receptor; N 99.1 9.8E-12 3.3E-16 121.4 -0.1 195 246-480 32-240 (285)
75 1h6u_A Internalin H; cell adhe 99.1 1.7E-10 5.7E-15 114.1 8.6 101 258-379 61-161 (308)
76 3zyi_A Leucine-rich repeat-con 99.1 1.1E-11 3.9E-16 129.4 0.0 131 256-402 119-249 (452)
77 1wwl_A Monocyte differentiatio 99.0 3.1E-10 1.1E-14 112.3 7.1 206 258-499 93-307 (312)
78 1io0_A Tropomodulin; LRR prote 99.0 3.9E-09 1.3E-13 95.9 13.5 126 257-386 33-167 (185)
79 4g8a_A TOLL-like receptor 4; l 99.0 6.9E-11 2.4E-15 128.4 2.1 105 186-304 72-186 (635)
80 2z66_A Variable lymphocyte rec 99.0 2.7E-11 9.3E-16 119.5 -1.1 172 190-379 28-209 (306)
81 1io0_A Tropomodulin; LRR prote 99.0 6.6E-09 2.3E-13 94.4 14.8 135 206-359 26-167 (185)
82 1wwl_A Monocyte differentiatio 99.0 1.1E-09 3.7E-14 108.4 10.2 209 214-477 93-308 (312)
83 3g06_A SSPH2 (leucine-rich rep 99.0 2.9E-09 9.8E-14 115.0 13.6 229 190-478 61-297 (622)
84 2ra8_A Uncharacterized protein 99.0 4E-09 1.4E-13 106.1 13.4 177 186-394 135-331 (362)
85 1jl5_A Outer protein YOPM; leu 99.0 2.4E-09 8.2E-14 111.7 11.4 75 289-379 193-267 (454)
86 3rfs_A Internalin B, repeat mo 98.9 7.2E-11 2.5E-15 114.5 -1.0 51 441-497 178-231 (272)
87 2z62_A TOLL-like receptor 4, v 98.9 4.9E-11 1.7E-15 115.9 -2.9 200 260-497 28-233 (276)
88 1jl5_A Outer protein YOPM; leu 98.9 1.7E-09 5.8E-14 112.8 8.5 126 246-402 131-264 (454)
89 1h6u_A Internalin H; cell adhe 98.9 3.2E-09 1.1E-13 104.8 9.7 158 189-379 40-205 (308)
90 4ezg_A Putative uncharacterize 98.9 7.1E-10 2.4E-14 101.9 4.4 83 289-379 64-146 (197)
91 2ra8_A Uncharacterized protein 98.9 3.3E-09 1.1E-13 106.8 9.4 169 182-378 164-339 (362)
92 4ezg_A Putative uncharacterize 98.9 2.1E-09 7.2E-14 98.7 7.3 148 189-378 43-190 (197)
93 1h6t_A Internalin B; cell adhe 98.9 1.9E-09 6.4E-14 105.6 6.5 101 258-379 44-144 (291)
94 3rfs_A Internalin B, repeat mo 98.9 4.8E-10 1.7E-14 108.6 2.2 174 258-499 39-216 (272)
95 4glp_A Monocyte differentiatio 98.8 8.7E-10 3E-14 109.0 3.2 116 258-379 115-234 (310)
96 2o6q_A Variable lymphocyte rec 98.8 4.1E-10 1.4E-14 109.0 -0.1 176 260-499 37-216 (270)
97 2z62_A TOLL-like receptor 4, v 98.8 3.3E-10 1.1E-14 109.9 -1.5 202 216-478 28-237 (276)
98 1m9s_A Internalin B; cell inva 98.8 2.6E-09 9E-14 115.1 5.2 101 258-379 41-141 (605)
99 2o6q_A Variable lymphocyte rec 98.8 1.2E-09 4.3E-14 105.6 1.8 150 191-379 17-167 (270)
100 1h6t_A Internalin B; cell adhe 98.7 1.5E-08 5E-13 99.2 8.4 164 189-403 45-208 (291)
101 1p9a_G Platelet glycoprotein I 98.7 1.4E-09 4.8E-14 106.4 0.5 81 289-378 53-133 (290)
102 1fs1_A SKP2 F-BOX, cyclin A/CD 98.7 6E-09 2E-13 73.5 3.5 42 126-167 10-53 (53)
103 1m9s_A Internalin B; cell inva 98.7 1.8E-08 6.1E-13 108.6 8.3 103 256-379 105-207 (605)
104 2xwt_C Thyrotropin receptor; s 98.7 1.6E-09 5.3E-14 102.8 -0.9 55 444-500 179-238 (239)
105 2xwt_C Thyrotropin receptor; s 98.6 3.2E-10 1.1E-14 107.6 -8.8 59 440-499 151-216 (239)
106 1pgv_A TMD-1, tropomodulin TMD 98.6 1.4E-06 4.6E-11 79.0 15.5 113 278-391 28-150 (197)
107 3m19_A Variable lymphocyte rec 98.6 5.9E-09 2E-13 99.6 -0.9 36 464-499 154-190 (251)
108 2je0_A Acidic leucine-rich nuc 98.5 4.3E-08 1.5E-12 85.4 4.5 106 258-377 40-148 (149)
109 1p9a_G Platelet glycoprotein I 98.5 7.5E-09 2.6E-13 101.2 -0.5 149 189-379 9-158 (290)
110 4g8a_A TOLL-like receptor 4; l 98.5 1.2E-08 4.1E-13 110.6 0.1 128 369-499 445-578 (635)
111 1pgv_A TMD-1, tropomodulin TMD 98.5 1.4E-06 4.8E-11 78.9 12.3 118 258-378 39-166 (197)
112 2ell_A Acidic leucine-rich nuc 98.5 7.1E-08 2.4E-12 85.8 3.7 109 258-380 47-158 (168)
113 2je0_A Acidic leucine-rich nuc 98.4 7.8E-08 2.7E-12 83.7 3.4 16 289-304 40-55 (149)
114 2ell_A Acidic leucine-rich nuc 98.4 2.1E-08 7.1E-13 89.4 -0.4 84 289-379 22-105 (168)
115 1xeu_A Internalin C; cellular 98.4 1.3E-07 4.3E-12 91.0 4.1 37 440-477 146-184 (263)
116 3m19_A Variable lymphocyte rec 98.4 7.6E-08 2.6E-12 91.8 2.3 109 258-379 81-189 (251)
117 4ay9_X Follicle-stimulating ho 98.3 2.3E-09 7.9E-14 107.9 -10.5 225 260-497 30-255 (350)
118 3sb4_A Hypothetical leucine ri 98.3 3.4E-07 1.2E-11 91.0 4.8 191 190-403 25-234 (329)
119 1xeu_A Internalin C; cellular 98.3 6.6E-07 2.2E-11 86.0 6.6 144 188-379 39-182 (263)
120 2o6s_A Variable lymphocyte rec 98.2 3.4E-08 1.2E-12 91.3 -4.4 15 342-356 75-89 (208)
121 1a9n_A U2A', U2A'; complex (nu 98.2 3.2E-07 1.1E-11 82.3 1.4 59 441-499 85-151 (176)
122 2xot_A Amphoterin-induced prot 98.2 6.7E-07 2.3E-11 90.1 3.8 113 256-380 84-200 (361)
123 1a9n_A U2A', U2A'; complex (nu 98.2 2.2E-06 7.6E-11 76.7 6.6 85 289-379 62-150 (176)
124 2v9t_B SLIT homolog 2 protein 98.1 4.2E-07 1.4E-11 84.8 1.3 112 256-380 52-163 (220)
125 1dce_A Protein (RAB geranylger 98.1 7.7E-08 2.6E-12 102.9 -4.7 55 440-494 504-566 (567)
126 3e6j_A Variable lymphocyte rec 98.1 9.6E-07 3.3E-11 82.9 3.2 131 216-380 40-170 (229)
127 2o6s_A Variable lymphocyte rec 98.1 6.8E-07 2.3E-11 82.4 2.1 110 258-380 50-159 (208)
128 3cvr_A Invasion plasmid antige 98.1 1.3E-06 4.3E-11 93.3 4.0 181 259-503 58-244 (571)
129 2xot_A Amphoterin-induced prot 98.0 3.6E-07 1.2E-11 92.2 -2.5 84 289-378 62-145 (361)
130 2v70_A SLIT-2, SLIT homolog 2 98.0 1.3E-06 4.4E-11 81.4 1.3 111 257-380 54-164 (220)
131 1ds9_A Outer arm dynein; leuci 98.0 3E-07 1E-11 84.2 -3.3 101 289-401 46-146 (198)
132 2v70_A SLIT-2, SLIT homolog 2 98.0 1.8E-06 6.2E-11 80.5 1.8 134 191-356 33-166 (220)
133 3e6j_A Variable lymphocyte rec 98.0 1.1E-06 3.7E-11 82.6 0.1 63 290-356 39-101 (229)
134 3sb4_A Hypothetical leucine ri 97.9 9.4E-06 3.2E-10 80.5 6.7 124 316-472 201-328 (329)
135 2v9t_B SLIT homolog 2 protein 97.9 7.9E-07 2.7E-11 82.9 -1.4 62 291-356 32-93 (220)
136 3cvr_A Invasion plasmid antige 97.9 5.5E-06 1.9E-10 88.3 3.7 123 246-403 59-188 (571)
137 4ay9_X Follicle-stimulating ho 97.9 7.4E-07 2.5E-11 89.4 -3.0 227 190-455 30-257 (350)
138 3l2o_B F-box only protein 4; s 97.8 9.3E-06 3.2E-10 77.1 3.9 45 126-170 6-52 (312)
139 1ds9_A Outer arm dynein; leuci 97.8 1.5E-05 5.1E-10 72.7 4.5 62 290-356 92-153 (198)
140 2e31_A FBS1, F-box only protei 97.8 1.1E-05 3.8E-10 77.4 3.6 42 126-167 52-96 (297)
141 2o6r_A Variable lymphocyte rec 97.4 2E-05 6.8E-10 70.4 0.0 109 259-380 27-135 (177)
142 2wfh_A SLIT homolog 2 protein 97.4 3.1E-05 1E-09 70.4 1.0 107 260-380 31-137 (193)
143 1dce_A Protein (RAB geranylger 97.4 4.5E-05 1.6E-09 81.4 2.4 122 261-401 442-566 (567)
144 1w8a_A SLIT protein; signaling 97.4 1.2E-05 4E-10 73.1 -2.3 109 260-380 29-137 (192)
145 2o6r_A Variable lymphocyte rec 97.4 7.2E-05 2.5E-09 66.7 3.0 111 216-357 28-138 (177)
146 2wfh_A SLIT homolog 2 protein 97.3 6.9E-05 2.4E-09 68.0 2.0 109 216-356 31-139 (193)
147 1w8a_A SLIT protein; signaling 97.3 5.3E-05 1.8E-09 68.7 1.0 89 257-356 51-139 (192)
148 3v7d_B Cell division control p 97.2 0.00025 8.7E-09 73.1 5.8 42 126-167 16-60 (464)
149 3rw6_A Nuclear RNA export fact 97.1 0.00023 7.9E-09 67.8 3.5 24 282-305 161-184 (267)
150 4b8c_D Glucose-repressible alc 97.0 0.00013 4.4E-09 80.3 1.2 105 258-379 222-326 (727)
151 1p22_A F-BOX/WD-repeat protein 97.0 0.00027 9.2E-09 72.5 3.2 42 126-167 12-59 (435)
152 4fdw_A Leucine rich hypothetic 96.9 0.00012 4.3E-09 74.4 -1.0 98 289-402 178-278 (401)
153 2ovr_B FBW7, F-BOX/WD repeat p 96.8 0.00049 1.7E-08 70.6 2.9 42 126-167 20-63 (445)
154 4b8c_D Glucose-repressible alc 96.7 0.00038 1.3E-08 76.6 1.5 102 369-499 224-327 (727)
155 3rw6_A Nuclear RNA export fact 96.6 0.003 1E-07 60.0 6.7 89 309-401 162-257 (267)
156 3g39_A Variable lymphocyte rec 96.3 0.00098 3.3E-08 58.9 1.3 37 289-327 52-88 (170)
157 2r9u_A Variable lymphocyte rec 96.3 0.00047 1.6E-08 61.3 -1.0 16 289-304 55-70 (174)
158 2r9u_A Variable lymphocyte rec 96.3 0.0011 3.7E-08 58.9 1.3 85 290-380 32-116 (174)
159 3g39_A Variable lymphocyte rec 96.2 0.00052 1.8E-08 60.7 -0.9 84 290-379 29-112 (170)
160 4fs7_A Uncharacterized protein 96.0 0.00047 1.6E-08 70.0 -2.7 57 439-497 315-375 (394)
161 2ifg_A High affinity nerve gro 95.0 0.0055 1.9E-07 60.7 0.9 88 258-356 29-116 (347)
162 2ifg_A High affinity nerve gro 94.4 0.014 4.8E-07 57.7 2.1 78 421-499 33-114 (347)
163 4fdw_A Leucine rich hypothetic 94.3 0.011 3.6E-07 60.1 0.9 157 217-403 158-331 (401)
164 4gt6_A Cell surface protein; l 84.4 0.59 2E-05 46.8 3.6 113 243-378 262-387 (394)
165 4gt6_A Cell surface protein; l 82.3 1.4 4.9E-05 43.9 5.5 120 256-401 261-384 (394)
166 4fs7_A Uncharacterized protein 76.1 0.26 8.8E-06 49.5 -2.4 36 314-353 68-104 (394)
167 2ysa_A Retinoblastoma-binding 67.7 2.2 7.6E-05 29.2 1.5 15 32-48 6-20 (55)
168 4h09_A Hypothetical leucine ri 66.0 2.3 7.7E-05 42.0 1.9 104 256-378 236-342 (379)
169 4h09_A Hypothetical leucine ri 65.9 1.6 5.5E-05 43.1 0.8 100 289-402 238-340 (379)
170 4ayb_P DNA-directed RNA polyme 55.5 4.2 0.00014 26.5 1.1 12 33-44 3-14 (48)
171 3j20_P 30S ribosomal protein S 46.7 13 0.00045 25.4 2.5 21 23-43 7-28 (56)
172 3rfe_A Platelet glycoprotein I 42.3 8.5 0.00029 31.5 1.3 33 344-378 32-64 (130)
173 1znf_A 31ST zinc finger from X 39.9 11 0.00037 20.0 1.1 13 33-45 1-13 (27)
174 1paa_A Yeast transcription fac 38.5 12 0.0004 20.5 1.2 13 33-45 2-14 (30)
175 2m0f_A Zinc finger and BTB dom 37.9 7.5 0.00025 21.1 0.2 13 32-44 1-13 (29)
176 2m0e_A Zinc finger and BTB dom 36.6 16 0.00054 19.6 1.5 12 33-44 2-13 (29)
177 3rfe_A Platelet glycoprotein I 36.4 22 0.00074 29.0 2.9 34 445-478 32-68 (130)
178 1ard_A Yeast transcription fac 35.2 14 0.00049 19.8 1.2 13 33-45 2-14 (29)
179 2lvu_A Zinc finger and BTB dom 40.9 8.2 0.00028 20.5 0.0 12 33-44 2-13 (26)
180 1p7a_A BF3, BKLF, kruppel-like 33.4 16 0.00054 21.4 1.2 15 31-45 9-23 (37)
181 1klr_A Zinc finger Y-chromosom 29.8 23 0.00078 19.0 1.4 13 33-45 2-14 (30)
182 1rim_A E6APC2 peptide; E6-bind 27.8 26 0.00089 19.9 1.5 13 33-45 2-14 (33)
183 2kvg_A Zinc finger and BTB dom 27.6 8.9 0.0003 20.7 -0.7 13 33-45 3-15 (27)
184 2kvh_A Zinc finger and BTB dom 26.5 15 0.0005 19.6 0.1 12 33-44 3-14 (27)
185 2m0d_A Zinc finger and BTB dom 26.3 15 0.00051 19.9 0.1 13 32-44 2-14 (30)
186 2kvf_A Zinc finger and BTB dom 26.2 15 0.00053 19.6 0.2 13 33-45 3-15 (28)
187 1rik_A E6APC1 peptide; E6-bind 25.6 16 0.00053 19.7 0.1 13 33-45 2-14 (29)
188 2kfq_A FP1; protein, de novo p 24.7 21 0.00073 20.1 0.6 12 33-44 2-13 (32)
189 1srk_A Zinc finger protein ZFP 23.5 19 0.00063 20.7 0.2 14 32-45 6-19 (35)
190 2elr_A Zinc finger protein 406 23.2 30 0.001 19.8 1.2 14 32-45 8-21 (36)
191 1u6p_A GAG polyprotein; MLV, A 22.9 1.4E+02 0.0048 20.2 4.5 18 29-48 19-36 (56)
192 2lvt_A Zinc finger and BTB dom 28.3 18 0.00062 19.5 0.0 12 33-44 2-13 (29)
193 2en7_A Zinc finger protein 268 20.6 40 0.0014 20.4 1.4 14 32-45 11-24 (44)
194 2ee8_A Protein ODD-skipped-rel 20.4 67 0.0023 24.2 3.0 23 23-45 7-29 (106)
195 3h0g_L DNA-directed RNA polyme 20.2 40 0.0014 23.7 1.3 14 31-44 19-32 (63)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=2.1e-30 Score=281.42 Aligned_cols=374 Identities=15% Similarity=0.153 Sum_probs=231.6
Q ss_pred CCCCHHHHHHHHhcC-ChhhHHHHHHHHHHHHHhhHHHHhhccc--------------------ccccCCC---------
Q 045871 126 GGLPAAALWEVLRRL-PPPGLLAAAQVCKGWRETSRRLWRAAEE--------------------LRLRVPP--------- 175 (541)
Q Consensus 126 ~~LP~eil~~If~~L-~~~~l~~~~~Vck~W~~~~~~~~~~i~~--------------------~~l~~~~--------- 175 (541)
..||+|+|.+||+|| +.+|+.+++.|||+|+.+....|..+.. +.+...+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 93 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIP 93 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSC
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhccccc
Confidence 457999999999999 7999999999999999986433332221 0111000
Q ss_pred ----CcchhhHHHHHhhCCCccEEEecCCCCCChhhHHHHhhcCCC-ccEEEeeecCCcccccCHHHHHHHHhhCCCCce
Q 045871 176 ----RAQVGFVGSVLQKCSALVRLSLTMESDVDATMLACIAFSCPN-LESMEIYTSGSAVNRITGDELGRFVADKRCLAS 250 (541)
Q Consensus 176 ----~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~L~~l~~~~~~-L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~ 250 (541)
......+..+...+++|++|+|+++ .+++..+..+...+++ |++|+|++|. .++..++..+...+++|+.
T Consensus 94 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~----~~~~~~l~~~~~~~~~L~~ 168 (592)
T 3ogk_B 94 ENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCS----GFTTDGLLSIVTHCRKIKT 168 (592)
T ss_dssp TTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCE----EEEHHHHHHHHHHCTTCSE
T ss_pred ccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCC----CcCHHHHHHHHhhCCCCCE
Confidence 0011235555666777777777764 4566666655555544 6666666654 3555555555555666666
Q ss_pred eeecCc--------------cCCCCcceEEecccCCCC-CchhHHHH---------------------------------
Q 045871 251 LKMEGI--------------FNCPNMREISLEFSRQEN-DSTDLTTM--------------------------------- 282 (541)
Q Consensus 251 L~l~~~--------------~~~~~L~~L~L~~~~~~~-~~~~l~~l--------------------------------- 282 (541)
|.+.+. ..+++|++|+++++.... +...+..+
T Consensus 169 L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L 248 (592)
T 3ogk_B 169 LLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEF 248 (592)
T ss_dssp EECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEE
T ss_pred EECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhh
Confidence 665541 123444444443322110 00011000
Q ss_pred ------------------------------------HHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCC
Q 045871 283 ------------------------------------ADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVL 326 (541)
Q Consensus 283 ------------------------------------~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~ 326 (541)
+..+...+++|++|++++|.+.+..+..++ ..+++|++|+|.
T Consensus 249 ~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~-~~~~~L~~L~L~- 326 (592)
T 3ogk_B 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLI-QKCPNLEVLETR- 326 (592)
T ss_dssp EECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHH-TTCTTCCEEEEE-
T ss_pred cccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHH-HhCcCCCEEecc-
Confidence 111122455666666666666555554443 567777777776
Q ss_pred CCCCCHHHHHHHHhcCCCccEEEecC----------C-CCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCC
Q 045871 327 GSEITDASVAAIASTYSKLELLDLSG----------S-SISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLP 395 (541)
Q Consensus 327 ~~~i~d~~l~~l~~~~~~L~~L~L~~----------~-~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~ 395 (541)
..+++.++..+...|++|++|+|++ | .+++.++..+...| ++|++|++ .|..+++.++..++..|+
T Consensus 327 -~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~L~~L~l-~~~~l~~~~~~~l~~~~~ 403 (592)
T 3ogk_B 327 -NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC-QELEYMAV-YVSDITNESLESIGTYLK 403 (592)
T ss_dssp -GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC-TTCSEEEE-EESCCCHHHHHHHHHHCC
T ss_pred -CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC-ccCeEEEe-ecCCccHHHHHHHHhhCC
Confidence 3466677777767777777777773 4 77777777777666 47888877 556777777777777778
Q ss_pred CcceecccCC-cCCCCCCCCC--------Ccccccceeecccchh-hcHHHHHHHHh-CCCccEEEcCCCc----cHHHH
Q 045871 396 LLELMDCGMS-ICDPTSEDSN--------SDETCDFELQKAFNNK-LHLMYQKLIIK-HCCLKKLSLWGCS----GLDAL 460 (541)
Q Consensus 396 ~L~~l~~~~~-~~~~~~~~~~--------~~~~~l~~L~l~~c~~-l~~~~~~~l~~-~~~L~~L~L~~~~----~l~~l 460 (541)
+|+.|++... .|+....... .....+++|+|++|.. +++.....+.. +++|+.|+|++|. ++..+
T Consensus 404 ~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 483 (592)
T 3ogk_B 404 NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF 483 (592)
T ss_dssp SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH
T ss_pred CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH
Confidence 8887775321 1333333211 1123468888888764 55555554444 7888888888874 45667
Q ss_pred HhcCCCCCeeeccCCCCCCHh---HHHhcCCCCcEecccCCccccHHHHHHhHh
Q 045871 461 CLNCPELNDLNLNSCRNLRPE---TLLLHCPRLESVHASGCQELLVDTIHSQVK 511 (541)
Q Consensus 461 ~~~~~~L~~L~L~~c~~~~d~---~l~~~~p~L~~L~l~~C~~it~~~i~~~~~ 511 (541)
...|++|++|+|++|. +++. .+...+++|+.|+|++|. +++.+++.+..
T Consensus 484 ~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~ 535 (592)
T 3ogk_B 484 SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQM 535 (592)
T ss_dssp HTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGG
T ss_pred HhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHH
Confidence 7788888888888888 6663 344678888888888888 88877766653
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=5.3e-30 Score=278.32 Aligned_cols=366 Identities=16% Similarity=0.168 Sum_probs=223.2
Q ss_pred CCCHHHHHHHHhcCC-hhhHHHHHHHHHHHHHhhHHHHhhcccc--------------------cccCCCC---------
Q 045871 127 GLPAAALWEVLRRLP-PPGLLAAAQVCKGWRETSRRLWRAAEEL--------------------RLRVPPR--------- 176 (541)
Q Consensus 127 ~LP~eil~~If~~L~-~~~l~~~~~Vck~W~~~~~~~~~~i~~~--------------------~l~~~~~--------- 176 (541)
.||+|||.+||+||+ .+|+.+++.|||+|+.+....|..++.. .+.....
T Consensus 8 ~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~ 87 (594)
T 2p1m_B 8 SFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPD 87 (594)
T ss_dssp --CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCT
T ss_pred hCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccccc
Confidence 359999999999999 9999999999999999965555433221 1110000
Q ss_pred ----cchhhHHHHHhhCCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceee
Q 045871 177 ----AQVGFVGSVLQKCSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLK 252 (541)
Q Consensus 177 ----~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~ 252 (541)
....++..+...+++|++|+|+++ .+++..+..+...+++|++|+|.+|. .+++.++..+...+++|+.|.
T Consensus 88 ~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~----~~~~~~l~~~~~~~~~L~~L~ 162 (594)
T 2p1m_B 88 GWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCE----GFSTDGLAAIAATCRNLKELD 162 (594)
T ss_dssp TSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCE----EEEHHHHHHHHHHCTTCCEEE
T ss_pred cccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcC----CCCHHHHHHHHHhCCCCCEEe
Confidence 011246677788999999999986 48888888888789999999999885 588888888888999999999
Q ss_pred ecC--------------ccCCCCcceEEecccC-CCCCchhHHHHHHHHhcCCCCCCeEEecCcccchH-----------
Q 045871 253 MEG--------------IFNCPNMREISLEFSR-QENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHS----------- 306 (541)
Q Consensus 253 l~~--------------~~~~~~L~~L~L~~~~-~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~----------- 306 (541)
+.+ ...+++|++|++++|. .+++ .. +..+...+++|++|++++|.....
T Consensus 163 L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~----l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L 237 (594)
T 2p1m_B 163 LRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF-SA----LERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQL 237 (594)
T ss_dssp CTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCH-HH----HHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTC
T ss_pred CcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCH-HH----HHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcc
Confidence 875 1256788888888765 1221 11 222222455555555554410000
Q ss_pred ------------------------------------------HHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCC
Q 045871 307 ------------------------------------------VVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSK 344 (541)
Q Consensus 307 ------------------------------------------~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~ 344 (541)
.+..+. ..+++|++|+|.+|. +++.++..+...+++
T Consensus 238 ~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~ 315 (594)
T 2p1m_B 238 EELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVY-SVCSRLTTLNLSYAT-VQSYDLVKLLCQCPK 315 (594)
T ss_dssp SEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGH-HHHTTCCEEECTTCC-CCHHHHHHHHTTCTT
T ss_pred eEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHH-HhhCCCCEEEccCCC-CCHHHHHHHHhcCCC
Confidence 000000 123455555555553 555555544444555
Q ss_pred ccEEEecCC---------------------------------CCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHH
Q 045871 345 LELLDLSGS---------------------------------SISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFAT 391 (541)
Q Consensus 345 L~~L~L~~~---------------------------------~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~ 391 (541)
|++|++++| .+++.++..+...+ ++|+.|.+ +|+.+++.++..++
T Consensus 316 L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~-~~L~~L~~-~~~~l~~~~~~~l~ 393 (594)
T 2p1m_B 316 LQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC-PKLESVLY-FCRQMTNAALITIA 393 (594)
T ss_dssp CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHC-TTCCEEEE-EESCCCHHHHHHHH
T ss_pred cCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhc-hhHHHHHH-hcCCcCHHHHHHHH
Confidence 555555444 44444444444433 24454422 23445555555555
Q ss_pred hcCCCcceecccCC---cCCCCCCCCC--------CcccccceeecccchhhcHHHHHHHHh-CCCccEEEcCCCc----
Q 045871 392 AQLPLLELMDCGMS---ICDPTSEDSN--------SDETCDFELQKAFNNKLHLMYQKLIIK-HCCLKKLSLWGCS---- 455 (541)
Q Consensus 392 ~~~~~L~~l~~~~~---~~~~~~~~~~--------~~~~~l~~L~l~~c~~l~~~~~~~l~~-~~~L~~L~L~~~~---- 455 (541)
..|++|+.|++... .|.+...... ....++++|+|++ .+++.....+.. +++|+.|+|++|.
T Consensus 394 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~ 471 (594)
T 2p1m_B 394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDL 471 (594)
T ss_dssp HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHH
T ss_pred hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHH
Confidence 55555555554310 2233332111 0112356666654 455444444444 7778888887774
Q ss_pred cHHHHHhcCCCCCeeeccCCCCCCHhH---HHhcCCCCcEecccCCccccHHHHHHhH
Q 045871 456 GLDALCLNCPELNDLNLNSCRNLRPET---LLLHCPRLESVHASGCQELLVDTIHSQV 510 (541)
Q Consensus 456 ~l~~l~~~~~~L~~L~L~~c~~~~d~~---l~~~~p~L~~L~l~~C~~it~~~i~~~~ 510 (541)
++..+...|++|++|+|++|.. ++.. +...+++|+.|++++|+ +++.+++.+.
T Consensus 472 ~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~ 527 (594)
T 2p1m_B 472 GMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCS-VSFGACKLLG 527 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSC-CBHHHHHHHH
T ss_pred HHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCC-CCHHHHHHHH
Confidence 4555667788888888888885 6633 34568889999999987 4888888763
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.94 E-value=3.6e-26 Score=230.12 Aligned_cols=266 Identities=22% Similarity=0.280 Sum_probs=149.0
Q ss_pred CCHHHHHHHHhcCChhhHHHHHHHHHHHHHhh--HHHHhhcccccccCCCCcchhhHHHHHhhCCCccEEEecCCCCCCh
Q 045871 128 LPAAALWEVLRRLPPPGLLAAAQVCKGWRETS--RRLWRAAEELRLRVPPRAQVGFVGSVLQKCSALVRLSLTMESDVDA 205 (541)
Q Consensus 128 LP~eil~~If~~L~~~~l~~~~~Vck~W~~~~--~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~ 205 (541)
||+|++.+||+||+.+|+.+++.|||+|+.++ +.+|+.++..... +....+..+. ..+++.|++.+. .
T Consensus 12 LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~----~~~~~~~~~~--~~~l~~L~l~~n-~--- 81 (336)
T 2ast_B 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKN----LHPDVTGRLL--SQGVIAFRCPRS-F--- 81 (336)
T ss_dssp SCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCB----CCHHHHHHHH--HTTCSEEECTTC-E---
T ss_pred CCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeecccccc----CCHHHHHhhh--hccceEEEcCCc-c---
Confidence 49999999999999999999999999999998 6777766543322 1112222221 134555555541 1
Q ss_pred hhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEecccCCCCCchhHHHHHHH
Q 045871 206 TMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISLEFSRQENDSTDLTTMADG 285 (541)
Q Consensus 206 ~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~ 285 (541)
++... . .+..+++|++|++++|. +.+. . +..
T Consensus 82 ---------------------------l~~~~-----------~-----~~~~~~~L~~L~L~~~~-l~~~-~----~~~ 112 (336)
T 2ast_B 82 ---------------------------MDQPL-----------A-----EHFSPFRVQHMDLSNSV-IEVS-T----LHG 112 (336)
T ss_dssp ---------------------------ECSCC-----------C-----SCCCCBCCCEEECTTCE-ECHH-H----HHH
T ss_pred ---------------------------ccccc-----------h-----hhccCCCCCEEEccCCC-cCHH-H----HHH
Confidence 11100 0 01134556666665543 1111 0 111
Q ss_pred HhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCC-CCChHHHHHHH
Q 045871 286 LGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGS-SISDSGIGMIC 364 (541)
Q Consensus 286 l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~ 364 (541)
+...+++|++|++++|.+.+.....+ ..+++|++|+|.+|..+++.++..+...+++|++|+|++| .+++.++..+.
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~~~~~l--~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 190 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDPIVNTL--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 190 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHHHHHHH--TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH
T ss_pred HHhhCCCCCEEeCcCcccCHHHHHHH--hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH
Confidence 22256666666666666665554444 3466777777766656666666665556777777777777 77766655555
Q ss_pred hhCCCCccEEeccCCC-CCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCcccccceeecccchhhcHHHHHHHHhC
Q 045871 365 NVFPNTLSRLLLALCP-NITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDETCDFELQKAFNNKLHLMYQKLIIKH 443 (541)
Q Consensus 365 ~~~~~~L~~L~l~~c~-~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~ 443 (541)
..++.+|++|++++|. .+++.++..+...+++|+.|++ ++|..+++.....+.++
T Consensus 191 ~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l------------------------~~~~~l~~~~~~~l~~l 246 (336)
T 2ast_B 191 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL------------------------SDSVMLKNDCFQEFFQL 246 (336)
T ss_dssp HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC------------------------TTCTTCCGGGGGGGGGC
T ss_pred HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC------------------------CCCCcCCHHHHHHHhCC
Confidence 4442267777777765 4665555555555555555542 22221221222234455
Q ss_pred CCccEEEcCCCccHH----HHHhcCCCCCeeeccCCCCCCH
Q 045871 444 CCLKKLSLWGCSGLD----ALCLNCPELNDLNLNSCRNLRP 480 (541)
Q Consensus 444 ~~L~~L~L~~~~~l~----~l~~~~~~L~~L~L~~c~~~~d 480 (541)
++|++|+|++|..+. .....+++|++|+|++| +++
T Consensus 247 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~ 285 (336)
T 2ast_B 247 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPD 285 (336)
T ss_dssp TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCT
T ss_pred CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--cCH
Confidence 666666666663221 01234666666666666 444
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=4.9e-22 Score=215.49 Aligned_cols=318 Identities=16% Similarity=0.251 Sum_probs=225.0
Q ss_pred hhHHHHHhhCCCccEEEecCCCCCC-------------hhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCC
Q 045871 180 GFVGSVLQKCSALVRLSLTMESDVD-------------ATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKR 246 (541)
Q Consensus 180 ~~l~~l~~~~~~L~~L~L~~~~~~~-------------~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~ 246 (541)
.....+..++++|++|+|++|..+. ...+..+...+++|++|+|++| .+++..+..+...++
T Consensus 63 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-----~i~~~~~~~l~~~~~ 137 (592)
T 3ogk_B 63 ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-----IVSDLDLDRLAKARA 137 (592)
T ss_dssp SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-----BCCHHHHHHHHHHHG
T ss_pred cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-----EecHHHHHHHHHhcc
Confidence 3467788899999999998865432 2356777788999999999986 488888877776666
Q ss_pred C-CceeeecC------------ccCCCCcceEEecccCCCCCchh-HH------------------------HHHHHHhc
Q 045871 247 C-LASLKMEG------------IFNCPNMREISLEFSRQENDSTD-LT------------------------TMADGLGR 288 (541)
Q Consensus 247 ~-L~~L~l~~------------~~~~~~L~~L~L~~~~~~~~~~~-l~------------------------~l~~~l~~ 288 (541)
. |+.|.+.+ ...|++|++|+|++|........ +. ..+..+..
T Consensus 138 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp GGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred ccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 6 99999976 23789999999999754322111 11 11222223
Q ss_pred CCCCCCeEEecCcccchHH------------------------------------------------HHHHHHhcCCCCC
Q 045871 289 NCPRLQNIHIASIRLSHSV------------------------------------------------VLALTAAGLRGLR 320 (541)
Q Consensus 289 ~~~~L~~L~l~~~~i~~~~------------------------------------------------~~~l~~~~~~~L~ 320 (541)
.+++|++|++++|.+.... +..++ ..+++|+
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~-~~~~~L~ 296 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF-PFAAQIR 296 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGG-GGGGGCC
T ss_pred hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHH-hhcCCCc
Confidence 4555555555554332210 00000 2345666
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccC----------CCCCCHHHHHHH
Q 045871 321 MLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLAL----------CPNITSSGIQFA 390 (541)
Q Consensus 321 ~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~----------c~~l~~~~l~~l 390 (541)
+|+|++|. +++..+..+...+++|++|+|+ +.+++.++..+...+ ++|++|+|.+ |..+++.++..+
T Consensus 297 ~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~-~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l 373 (592)
T 3ogk_B 297 KLDLLYAL-LETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYC-KQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373 (592)
T ss_dssp EEEETTCC-CCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHC-TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred EEecCCCc-CCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhC-CCCCEEEeecCccccccccccCccCHHHHHHH
Confidence 77776664 7777776667778888888887 667778888887777 4799999995 889999999888
Q ss_pred HhcCCCcceecccCCcCCCCCCCCCC---c-ccccceeeccc---chhhcH-----HHHHHHHhCCCccEEEcCCCc---
Q 045871 391 TAQLPLLELMDCGMSICDPTSEDSNS---D-ETCDFELQKAF---NNKLHL-----MYQKLIIKHCCLKKLSLWGCS--- 455 (541)
Q Consensus 391 ~~~~~~L~~l~~~~~~~~~~~~~~~~---~-~~~l~~L~l~~---c~~l~~-----~~~~~l~~~~~L~~L~L~~~~--- 455 (541)
...|++|+.|++ .|.+....... . ...+++|+|++ |+.+++ .+...+..+++|++|+|+.|.
T Consensus 374 ~~~~~~L~~L~l---~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l 450 (592)
T 3ogk_B 374 AQGCQELEYMAV---YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450 (592)
T ss_dssp HHHCTTCSEEEE---EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGC
T ss_pred HhhCccCeEEEe---ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCc
Confidence 888999999985 23333332211 1 23478899984 667764 466677889999999997654
Q ss_pred ---cHHHHHhcCCCCCeeeccCCCCCCH---hHHHhcCCCCcEecccCCccccHHHHHHhHh
Q 045871 456 ---GLDALCLNCPELNDLNLNSCRNLRP---ETLLLHCPRLESVHASGCQELLVDTIHSQVK 511 (541)
Q Consensus 456 ---~l~~l~~~~~~L~~L~L~~c~~~~d---~~l~~~~p~L~~L~l~~C~~it~~~i~~~~~ 511 (541)
++..+...+++|++|+|++|. +++ ..+...|++|+.|+|++|. +++.++.....
T Consensus 451 ~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~ 510 (592)
T 3ogk_B 451 TDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVT 510 (592)
T ss_dssp CHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHH
T ss_pred cHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHH
Confidence 455677789999999999887 666 3456789999999999999 89998887764
No 5
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=3.7e-21 Score=208.56 Aligned_cols=224 Identities=17% Similarity=0.199 Sum_probs=171.7
Q ss_pred CCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEc--------CCCCCC
Q 045871 259 CPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSL--------VLGSEI 330 (541)
Q Consensus 259 ~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L--------~~~~~i 330 (541)
+++|++|+|++|. +++. . +..+...+++|++|++.+| +.+.++..+. ..+++|++|+| .++..+
T Consensus 288 ~~~L~~L~L~~~~-l~~~-~----l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~-~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 288 CSRLTTLNLSYAT-VQSY-D----LVKLLCQCPKLQRLWVLDY-IEDAGLEVLA-STCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp HTTCCEEECTTCC-CCHH-H----HHHHHTTCTTCCEEEEEGG-GHHHHHHHHH-HHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred hCCCCEEEccCCC-CCHH-H----HHHHHhcCCCcCEEeCcCc-cCHHHHHHHH-HhCCCCCEEEEecCcccccccCCCC
Confidence 4667777777665 3332 1 2333447899999999988 6666666665 57999999999 456789
Q ss_pred CHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEecc-----CCCCCC----HHHHHHHHhcCCCcceec
Q 045871 331 TDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLA-----LCPNIT----SSGIQFATAQLPLLELMD 401 (541)
Q Consensus 331 ~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~-----~c~~l~----~~~l~~l~~~~~~L~~l~ 401 (541)
++.++..+..+|++|++|+++.+.+++.++..++..+ ++|+.|++. +|..++ +.++..+...|++|+.|+
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~ 438 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR-PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS 438 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHC-TTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEE
T ss_pred CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhC-CCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEe
Confidence 9999999998899999998888899999999999877 589999999 788999 889999999999999999
Q ss_pred ccCCcCCCCCCCCCC---c-ccccceeecccchhhcHHH-HHHHHhCCCccEEEcCCCc----cHHHHHhcCCCCCeeec
Q 045871 402 CGMSICDPTSEDSNS---D-ETCDFELQKAFNNKLHLMY-QKLIIKHCCLKKLSLWGCS----GLDALCLNCPELNDLNL 472 (541)
Q Consensus 402 ~~~~~~~~~~~~~~~---~-~~~l~~L~l~~c~~l~~~~-~~~l~~~~~L~~L~L~~~~----~l~~l~~~~~~L~~L~L 472 (541)
+.. +..+.... . ...++.|+|++|. +++.. ..+...+++|++|+|.+|. ++..+...+++|+.|+|
T Consensus 439 L~~----~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 513 (594)
T 2p1m_B 439 LSG----LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM 513 (594)
T ss_dssp CCS----SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEE
T ss_pred ecC----cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEee
Confidence 622 22222111 1 2347999999987 55444 4444789999999999996 44556677999999999
Q ss_pred cCCCCCCH---hHHHhcCCCCcEecccC
Q 045871 473 NSCRNLRP---ETLLLHCPRLESVHASG 497 (541)
Q Consensus 473 ~~c~~~~d---~~l~~~~p~L~~L~l~~ 497 (541)
++|.. ++ ..+...+|+|+...+..
T Consensus 514 ~~~~~-~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 514 SSCSV-SFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp ESSCC-BHHHHHHHHHHCTTEEEEEECS
T ss_pred eCCCC-CHHHHHHHHHhCCCCEEEEecC
Confidence 99986 55 34557789997766654
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=5.3e-20 Score=193.14 Aligned_cols=317 Identities=17% Similarity=0.193 Sum_probs=224.1
Q ss_pred hHHHHHhhCCCccEEEecCCCCCChhhHHHHhhcCC----CccEEEeeecCCcccccCHH---HHHHHHhhCCCCceeee
Q 045871 181 FVGSVLQKCSALVRLSLTMESDVDATMLACIAFSCP----NLESMEIYTSGSAVNRITGD---ELGRFVADKRCLASLKM 253 (541)
Q Consensus 181 ~l~~l~~~~~~L~~L~L~~~~~~~~~~L~~l~~~~~----~L~~L~L~~c~~~~~~it~~---~l~~~~~~~~~L~~L~l 253 (541)
.+...+..+++|++|+|++ ..+++..+..+...++ +|++|+|++|. +++. .+...+..+++|+.|.+
T Consensus 47 ~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-----i~~~~~~~l~~~l~~~~~L~~L~L 120 (461)
T 1z7x_W 47 DISSALRVNPALAELNLRS-NELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-----LTGAGCGVLSSTLRTLPTLQELHL 120 (461)
T ss_dssp HHHHHHHTCTTCCEEECTT-CCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-----CBGGGHHHHHHHTTSCTTCCEEEC
T ss_pred HHHHHHHhCCCcCEEeCCC-CcCChHHHHHHHHHHhhCCCceeEEEccCCC-----CCHHHHHHHHHHHccCCceeEEEC
Confidence 4555667788899999988 4577777777776665 79999998764 6653 45566677888999988
Q ss_pred cC---------------ccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHH---hc
Q 045871 254 EG---------------IFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTA---AG 315 (541)
Q Consensus 254 ~~---------------~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~---~~ 315 (541)
++ ....++|++|++++|..... ....+...+. .+++|++|++++|.+.+.++..+.. ..
T Consensus 121 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~--~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 197 (461)
T 1z7x_W 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA--SCEPLASVLR-AKPDFKELTVSNNDINEAGVRVLCQGLKDS 197 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG--GHHHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHHHS
T ss_pred CCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH--HHHHHHHHHh-hCCCCCEEECcCCCcchHHHHHHHHHHhcC
Confidence 77 11245799999988643332 3334444455 6889999999999988877655532 24
Q ss_pred CCCCCEEEcCCCCCCCHHHHHHH---HhcCCCccEEEecCCCCChHHHHHHHhhC---CCCccEEeccCCCCCCHHHHHH
Q 045871 316 LRGLRMLSLVLGSEITDASVAAI---ASTYSKLELLDLSGSSISDSGIGMICNVF---PNTLSRLLLALCPNITSSGIQF 389 (541)
Q Consensus 316 ~~~L~~L~L~~~~~i~d~~l~~l---~~~~~~L~~L~L~~~~i~~~~l~~l~~~~---~~~L~~L~l~~c~~l~~~~l~~ 389 (541)
.++|++|+|.+| .+++.++..+ ...+++|++|+|++|.+++.++..++... .++|++|++++| .+++.++..
T Consensus 198 ~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~ 275 (461)
T 1z7x_W 198 PCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGD 275 (461)
T ss_dssp CCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHH
T ss_pred CCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHH
Confidence 669999999987 6776654333 34589999999999999999988776531 258999999997 788887555
Q ss_pred HH---hcCCCcceecccCCcCCCCCCCCCC-----cccccceeecccchhhc---HHHHHHHHhCCCccEEEcCCCc---
Q 045871 390 AT---AQLPLLELMDCGMSICDPTSEDSNS-----DETCDFELQKAFNNKLH---LMYQKLIIKHCCLKKLSLWGCS--- 455 (541)
Q Consensus 390 l~---~~~~~L~~l~~~~~~~~~~~~~~~~-----~~~~l~~L~l~~c~~l~---~~~~~~l~~~~~L~~L~L~~~~--- 455 (541)
+. ..+++|+.|++.............. ....+++|+|++|.--. ..+...+..+++|++|+|+++.
T Consensus 276 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 276 LCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp HHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred HHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence 54 4589999998643211000000000 11257899999987432 2356667888999999999985
Q ss_pred -cHHHHHh----cCCCCCeeeccCCCCCCH------hHHHhcCCCCcEecccCCccccHHHHHHhH
Q 045871 456 -GLDALCL----NCPELNDLNLNSCRNLRP------ETLLLHCPRLESVHASGCQELLVDTIHSQV 510 (541)
Q Consensus 456 -~l~~l~~----~~~~L~~L~L~~c~~~~d------~~l~~~~p~L~~L~l~~C~~it~~~i~~~~ 510 (541)
+...+.. .+++|++|+|++|. +++ ...+..+++|+.|++++|. +++.++..+.
T Consensus 356 ~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~l~ 419 (461)
T 1z7x_W 356 AGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGILQLV 419 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHHHH
T ss_pred ccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC-CCHHHHHHHH
Confidence 3333333 26799999999996 565 2223579999999999986 9999888776
No 7
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=1.2e-19 Score=190.55 Aligned_cols=304 Identities=21% Similarity=0.221 Sum_probs=187.1
Q ss_pred hhHHHHHhhCC----CccEEEecCCCCCChhh---HHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhh----CCCC
Q 045871 180 GFVGSVLQKCS----ALVRLSLTMESDVDATM---LACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVAD----KRCL 248 (541)
Q Consensus 180 ~~l~~l~~~~~----~L~~L~L~~~~~~~~~~---L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~----~~~L 248 (541)
..+..+...+. +|++|+++++ .+++.+ +......+++|++|+|+++ .+++.++..+... .++|
T Consensus 71 ~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-----~i~~~~~~~l~~~l~~~~~~L 144 (461)
T 1z7x_W 71 VGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDN-----LLGDAGLQLLCEGLLDPQCRL 144 (461)
T ss_dssp HHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSS-----BCHHHHHHHHHHHHTSTTCCC
T ss_pred HHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCC-----cCchHHHHHHHHHHhcCCCcc
Confidence 34555555555 6888888875 455543 3333456678888888864 4666666555443 3468
Q ss_pred ceeeecC--------------ccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHH-
Q 045871 249 ASLKMEG--------------IFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTA- 313 (541)
Q Consensus 249 ~~L~l~~--------------~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~- 313 (541)
+.|.+++ +..+++|++|++++|. +.+ .+...+...+....++|++|++++|.+.+.+...+..
T Consensus 145 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~-~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INE-AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHH-HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred eEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cch-HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 8888766 2346788888888754 322 2334444455545668888888888877765333221
Q ss_pred -hcCCCCCEEEcCCCCCCCHHHHHHHHh----cCCCccEEEecCCCCChHHHHHHHhh---CCCCccEEeccCCCCCCHH
Q 045871 314 -AGLRGLRMLSLVLGSEITDASVAAIAS----TYSKLELLDLSGSSISDSGIGMICNV---FPNTLSRLLLALCPNITSS 385 (541)
Q Consensus 314 -~~~~~L~~L~L~~~~~i~d~~l~~l~~----~~~~L~~L~L~~~~i~~~~l~~l~~~---~~~~L~~L~l~~c~~l~~~ 385 (541)
..+++|++|+|+++ .+++.++..+.. .+++|++|++++|.|++.++..+... + ++|++|+++++ .+++.
T Consensus 223 l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n-~i~~~ 299 (461)
T 1z7x_W 223 VASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK-ESLKELSLAGN-ELGDE 299 (461)
T ss_dssp HHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC-TTCCEEECTTC-CCHHH
T ss_pred HHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC-CCcceEECCCC-CCchH
Confidence 36788888888876 677777665543 46788888888888888776555442 3 57888888885 67777
Q ss_pred HHHHHHhc----CCCcceecccCCcCCCCCCCC---CC----cccccceeecccchhhcHHHHHHHHh-----CCCccEE
Q 045871 386 GIQFATAQ----LPLLELMDCGMSICDPTSEDS---NS----DETCDFELQKAFNNKLHLMYQKLIIK-----HCCLKKL 449 (541)
Q Consensus 386 ~l~~l~~~----~~~L~~l~~~~~~~~~~~~~~---~~----~~~~l~~L~l~~c~~l~~~~~~~l~~-----~~~L~~L 449 (541)
+...+... .+.|+.|++... . ..... .. ....+++|+|++| .+++.....+.. .++|++|
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n--~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSC--S-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVL 375 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTS--C-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred HHHHHHHHhccCCccceeeEcCCC--C-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEE
Confidence 66666543 357887774321 1 11110 00 1134678888887 455444443333 5688888
Q ss_pred EcCCCc-------cHHHHHhcCCCCCeeeccCCCCCCHh---HHH----hcCCCCcEecccCCc
Q 045871 450 SLWGCS-------GLDALCLNCPELNDLNLNSCRNLRPE---TLL----LHCPRLESVHASGCQ 499 (541)
Q Consensus 450 ~L~~~~-------~l~~l~~~~~~L~~L~L~~c~~~~d~---~l~----~~~p~L~~L~l~~C~ 499 (541)
+|++|. .+......+++|++|+|++|. +++. .+. ....+|+.|.+.++.
T Consensus 376 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred ECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC-CCHHHHHHHHHHhccCCcchhheeecccc
Confidence 888874 122333457888888888876 5552 222 223457777776654
No 8
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=8e-17 Score=161.64 Aligned_cols=236 Identities=20% Similarity=0.232 Sum_probs=182.0
Q ss_pred CCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCe
Q 045871 216 PNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQN 295 (541)
Q Consensus 216 ~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~ 295 (541)
..++.++++++ .+.+..+..+.. ++++.|+++++....... .+. .+++|++
T Consensus 47 ~~~~~l~l~~~-----~~~~~~~~~~~~----------------~~l~~L~l~~n~l~~~~~-------~~~-~~~~L~~ 97 (336)
T 2ast_B 47 SLWQTLDLTGK-----NLHPDVTGRLLS----------------QGVIAFRCPRSFMDQPLA-------EHF-SPFRVQH 97 (336)
T ss_dssp TTSSEEECTTC-----BCCHHHHHHHHH----------------TTCSEEECTTCEECSCCC-------SCC-CCBCCCE
T ss_pred hhheeeccccc-----cCCHHHHHhhhh----------------ccceEEEcCCccccccch-------hhc-cCCCCCE
Confidence 45788888763 466655544421 566777776643222211 123 6889999
Q ss_pred EEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCC-CCChHHHHHHHhhCCCCccEE
Q 045871 296 IHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGS-SISDSGIGMICNVFPNTLSRL 374 (541)
Q Consensus 296 L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~~L~~L 374 (541)
|++++|.+.+.++...+ ..+++|++|+|.+| .+++.....+.. +++|++|+|++| .+++.++..+...+ ++|++|
T Consensus 98 L~L~~~~l~~~~~~~~~-~~~~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~-~~L~~L 173 (336)
T 2ast_B 98 MDLSNSVIEVSTLHGIL-SQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSC-SRLDEL 173 (336)
T ss_dssp EECTTCEECHHHHHHHH-TTBCCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHC-TTCCEE
T ss_pred EEccCCCcCHHHHHHHH-hhCCCCCEEeCcCc-ccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcC-CCCCEE
Confidence 99999999887666665 68999999999988 689888887776 999999999999 89999888877777 589999
Q ss_pred eccCCCCCCHHHHHHHHhcCC-CcceecccCCcCCCCCCCCCCcccccceeecccch-hhc-HHHHHHHHhCCCccEEEc
Q 045871 375 LLALCPNITSSGIQFATAQLP-LLELMDCGMSICDPTSEDSNSDETCDFELQKAFNN-KLH-LMYQKLIIKHCCLKKLSL 451 (541)
Q Consensus 375 ~l~~c~~l~~~~l~~l~~~~~-~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~-~l~-~~~~~~l~~~~~L~~L~L 451 (541)
++++|..+++.++..+...++ +|+.|+ |++|. .++ ..+...+..+++|++|+|
T Consensus 174 ~l~~~~~l~~~~~~~~~~~l~~~L~~L~------------------------l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 174 NLSWCFDFTEKHVQVAVAHVSETITQLN------------------------LSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp ECCCCTTCCHHHHHHHHHHSCTTCCEEE------------------------CCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred cCCCCCCcChHHHHHHHHhcccCCCEEE------------------------eCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 999987899888888888888 887775 44454 344 456667888999999999
Q ss_pred CCCccH----HHHHhcCCCCCeeeccCCCCCCHhHH--HhcCCCCcEecccCCccccHHHHHHhH
Q 045871 452 WGCSGL----DALCLNCPELNDLNLNSCRNLRPETL--LLHCPRLESVHASGCQELLVDTIHSQV 510 (541)
Q Consensus 452 ~~~~~l----~~l~~~~~~L~~L~L~~c~~~~d~~l--~~~~p~L~~L~l~~C~~it~~~i~~~~ 510 (541)
.+|..+ ......+++|++|+|++|..+++..+ +..+++|+.|++++| ++++++..+.
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~~~~~~l~ 292 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLK 292 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHH
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--cCHHHHHHHH
Confidence 998622 12335689999999999987877543 467999999999999 8888887765
No 9
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=6.6e-17 Score=165.67 Aligned_cols=36 Identities=17% Similarity=0.060 Sum_probs=17.2
Q ss_pred CCCCCeeeccCCCCCCH------hHHHhcCCCCcEecccCCc
Q 045871 464 CPELNDLNLNSCRNLRP------ETLLLHCPRLESVHASGCQ 499 (541)
Q Consensus 464 ~~~L~~L~L~~c~~~~d------~~l~~~~p~L~~L~l~~C~ 499 (541)
+++|+.|+|++|..... ..+...+++|+.|++++|.
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 55555555555542221 1111335556666665554
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=5.3e-16 Score=158.90 Aligned_cols=270 Identities=16% Similarity=0.120 Sum_probs=179.1
Q ss_pred HHHHHhhCCCccEEEecCCCCCChhhHHHHh---hcCCCccEEEeeecCCcccccC---HHHHHHHHhhCCCCceeeecC
Q 045871 182 VGSVLQKCSALVRLSLTMESDVDATMLACIA---FSCPNLESMEIYTSGSAVNRIT---GDELGRFVADKRCLASLKMEG 255 (541)
Q Consensus 182 l~~l~~~~~~L~~L~L~~~~~~~~~~L~~l~---~~~~~L~~L~L~~c~~~~~~it---~~~l~~~~~~~~~L~~L~l~~ 255 (541)
+...+..+++|++|+|+++ .+++.....++ ..+++|++|+|++|. .+.++ ..++..+...
T Consensus 24 l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~--~~~l~~~~~~~~~~l~~~----------- 89 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIF--TGRVKDEIPEALRLLLQA----------- 89 (386)
T ss_dssp TSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCC--TTSCGGGSHHHHHHHHHH-----------
T ss_pred HHHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccc--cCccccchhHHHHHHHHH-----------
Confidence 3344567788999999985 56665555543 357899999999864 23343 3355544432
Q ss_pred ccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHH--hcC---------CCCCEEEc
Q 045871 256 IFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTA--AGL---------RGLRMLSL 324 (541)
Q Consensus 256 ~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~--~~~---------~~L~~L~L 324 (541)
+..+++|++|+|++|..... +...+...+. .+++|++|++++|.+.+.+...+.. ..+ ++|++|+|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~--~~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPT--AQEPLIDFLS-KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTT--THHHHHHHHH-HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred HhhCCcccEEECCCCcCCHH--HHHHHHHHHH-hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 23668889999988544332 3444445555 7889999999999987665544321 233 89999999
Q ss_pred CCCCCCCHHHHHHH---HhcCCCccEEEecCCCCChHHHHHHHh----hCCCCccEEeccCCCCCCHHHHHHHHh---cC
Q 045871 325 VLGSEITDASVAAI---ASTYSKLELLDLSGSSISDSGIGMICN----VFPNTLSRLLLALCPNITSSGIQFATA---QL 394 (541)
Q Consensus 325 ~~~~~i~d~~l~~l---~~~~~~L~~L~L~~~~i~~~~l~~l~~----~~~~~L~~L~l~~c~~l~~~~l~~l~~---~~ 394 (541)
+++ .+++.++..+ ...+++|++|+|++|.|++.|+..+.. .+ ++|+.|+|++| .+++.+...+.. .+
T Consensus 167 ~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 167 GRN-RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDN-TFTHLGSSALAIALKSW 243 (386)
T ss_dssp CSS-CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSS-CCHHHHHHHHHHHGGGC
T ss_pred CCC-CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC-CCccEEECcCC-CCCcHHHHHHHHHHccC
Confidence 886 6776655543 335889999999999999988777655 33 58999999985 587766666653 35
Q ss_pred CCcceecccCCcCCCCCCCCCCcccccceeecccchhhcHH----HHHHHHh--CCCccEEEcCCCc--c-----HHH-H
Q 045871 395 PLLELMDCGMSICDPTSEDSNSDETCDFELQKAFNNKLHLM----YQKLIIK--HCCLKKLSLWGCS--G-----LDA-L 460 (541)
Q Consensus 395 ~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~~l~~~----~~~~l~~--~~~L~~L~L~~~~--~-----l~~-l 460 (541)
++|+.|+ |++|. +++. +...+.. +++|++|+|++|. . +.. +
T Consensus 244 ~~L~~L~------------------------L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 244 PNLRELG------------------------LNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp TTCCEEE------------------------CTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred CCcCEEE------------------------CCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 5555554 44443 3333 3344433 8999999999985 2 333 3
Q ss_pred HhcCCCCCeeeccCCCCCCH----hHHHhcCCCCcEeccc
Q 045871 461 CLNCPELNDLNLNSCRNLRP----ETLLLHCPRLESVHAS 496 (541)
Q Consensus 461 ~~~~~~L~~L~L~~c~~~~d----~~l~~~~p~L~~L~l~ 496 (541)
..++++|+.|+|++|....+ ..+...+++++.+++.
T Consensus 299 ~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 299 DEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELD 338 (386)
T ss_dssp HHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEEC
T ss_pred HhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhh
Confidence 35689999999999985444 2333445555555443
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.69 E-value=7e-16 Score=155.49 Aligned_cols=272 Identities=18% Similarity=0.151 Sum_probs=175.0
Q ss_pred HhhCCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC--------cc
Q 045871 186 LQKCSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG--------IF 257 (541)
Q Consensus 186 ~~~~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~--------~~ 257 (541)
+..+++|++|+++++ .+++.. . ...+++|++|++++|. ++.- ..+..+++|+.|.+++ +.
T Consensus 62 ~~~~~~L~~L~l~~n-~i~~~~--~-~~~l~~L~~L~L~~n~-----i~~~---~~~~~l~~L~~L~l~~n~i~~~~~~~ 129 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGN-QITDIS--P-LSNLVKLTNLYIGTNK-----ITDI---SALQNLTNLRELYLNEDNISDISPLA 129 (347)
T ss_dssp GGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSC-----CCCC---GGGTTCTTCSEEECTTSCCCCCGGGT
T ss_pred hhhcCCccEEEccCC-ccccch--h-hhcCCcCCEEEccCCc-----ccCc---hHHcCCCcCCEEECcCCcccCchhhc
Confidence 456788999999885 333211 1 4567899999998764 3331 1256678888888876 45
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHH
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAA 337 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~ 337 (541)
.+++|++|++++|....... .+. .+++|++|++++|.+.+... + ..+++|+.|++.++ .+++...
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~-------~~~-~l~~L~~L~l~~~~~~~~~~--~--~~l~~L~~L~l~~n-~l~~~~~-- 194 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLS-------PLS-NMTGLNYLTVTESKVKDVTP--I--ANLTDLYSLSLNYN-QIEDISP-- 194 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCG-------GGT-TCTTCCEEECCSSCCCCCGG--G--GGCTTCSEEECTTS-CCCCCGG--
T ss_pred cCCceeEEECCCCCCccccc-------chh-hCCCCcEEEecCCCcCCchh--h--ccCCCCCEEEccCC-ccccccc--
Confidence 67888888888876555432 133 77888888888887665433 2 47888888888876 3433211
Q ss_pred HHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCc
Q 045871 338 IASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSD 417 (541)
Q Consensus 338 l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~ 417 (541)
...+++|+.|++++|.+++... +... ++|++|++++| .+++... ...+++|+.+++........ .....
T Consensus 195 -~~~l~~L~~L~l~~n~l~~~~~--~~~~--~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~~~~ 263 (347)
T 4fmz_A 195 -LASLTSLHYFTAYVNQITDITP--VANM--TRLNSLKIGNN-KITDLSP---LANLSQLTWLEIGTNQISDI--NAVKD 263 (347)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGG--GGGC--TTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSCCCCC--GGGTT
T ss_pred -ccCCCccceeecccCCCCCCch--hhcC--CcCCEEEccCC-ccCCCcc---hhcCCCCCEEECCCCccCCC--hhHhc
Confidence 3458888888888887776433 3333 58888888886 3443221 45688888887543222111 11222
Q ss_pred ccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc---cHHHHHhcCCCCCeeeccCCCCCCHhHHHhcCCCCcEec
Q 045871 418 ETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS---GLDALCLNCPELNDLNLNSCRNLRPETLLLHCPRLESVH 494 (541)
Q Consensus 418 ~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~---~l~~l~~~~~~L~~L~L~~c~~~~d~~l~~~~p~L~~L~ 494 (541)
...+++|++++|. +++. ..+..+++|+.|+|++|. ........+++|++|+|++|....... ...+++|+.|+
T Consensus 264 l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~ 339 (347)
T 4fmz_A 264 LTKLKMLNVGSNQ-ISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSAD 339 (347)
T ss_dssp CTTCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEES
T ss_pred CCCcCEEEccCCc-cCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceee
Confidence 3346788888874 3322 235677888888888874 223444568888888888887433233 56788888888
Q ss_pred ccCCc
Q 045871 495 ASGCQ 499 (541)
Q Consensus 495 l~~C~ 499 (541)
+++|+
T Consensus 340 l~~N~ 344 (347)
T 4fmz_A 340 FANQV 344 (347)
T ss_dssp SSCC-
T ss_pred hhhhc
Confidence 88876
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.62 E-value=7.6e-15 Score=147.88 Aligned_cols=272 Identities=17% Similarity=0.153 Sum_probs=180.9
Q ss_pred hCCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC--------ccCC
Q 045871 188 KCSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG--------IFNC 259 (541)
Q Consensus 188 ~~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~--------~~~~ 259 (541)
.+++|++|++.++.-..-.. ...+++|++|++++|. +++... +..+++|+.|.+.+ +..+
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~----~~~~~~L~~L~l~~n~-----i~~~~~---~~~l~~L~~L~L~~n~i~~~~~~~~l 109 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG----IEYLTNLEYLNLNGNQ-----ITDISP---LSNLVKLTNLYIGTNKITDISALQNL 109 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT----GGGCTTCCEEECCSSC-----CCCCGG---GTTCTTCCEEECCSSCCCCCGGGTTC
T ss_pred hcccccEEEEeCCccccchh----hhhcCCccEEEccCCc-----cccchh---hhcCCcCCEEEccCCcccCchHHcCC
Confidence 45789999999854332122 3568999999999874 333211 56788899998877 5678
Q ss_pred CCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHH
Q 045871 260 PNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIA 339 (541)
Q Consensus 260 ~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~ 339 (541)
++|++|++++|....- . .+. .+++|+.|++++|....... .+ ..+++|+.|++.++. +++... .
T Consensus 110 ~~L~~L~l~~n~i~~~-~-------~~~-~l~~L~~L~l~~n~~~~~~~-~~--~~l~~L~~L~l~~~~-~~~~~~---~ 173 (347)
T 4fmz_A 110 TNLRELYLNEDNISDI-S-------PLA-NLTKMYSLNLGANHNLSDLS-PL--SNMTGLNYLTVTESK-VKDVTP---I 173 (347)
T ss_dssp TTCSEEECTTSCCCCC-G-------GGT-TCTTCCEEECTTCTTCCCCG-GG--TTCTTCCEEECCSSC-CCCCGG---G
T ss_pred CcCCEEECcCCcccCc-h-------hhc-cCCceeEEECCCCCCccccc-ch--hhCCCCcEEEecCCC-cCCchh---h
Confidence 8899999987544332 1 133 78889999998884332211 12 578889999998873 332221 3
Q ss_pred hcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCccc
Q 045871 340 STYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDET 419 (541)
Q Consensus 340 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~ 419 (541)
..+++|++|++++|.+++... +... ++|+.|+++++ .+++... ...+++|+.|++........ .......
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~--~~~l--~~L~~L~l~~n-~l~~~~~---~~~~~~L~~L~l~~n~l~~~--~~~~~l~ 243 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQIEDISP--LASL--TSLHYFTAYVN-QITDITP---VANMTRLNSLKIGNNKITDL--SPLANLS 243 (347)
T ss_dssp GGCTTCSEEECTTSCCCCCGG--GGGC--TTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred ccCCCCCEEEccCCccccccc--ccCC--CccceeecccC-CCCCCch---hhcCCcCCEEEccCCccCCC--cchhcCC
Confidence 458899999999987776432 3333 68999999886 4443222 45688899988543221111 1122334
Q ss_pred ccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cHHHHHhcCCCCCeeeccCCCCCCH-hHHHhcCCCCcEeccc
Q 045871 420 CDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GLDALCLNCPELNDLNLNSCRNLRP-ETLLLHCPRLESVHAS 496 (541)
Q Consensus 420 ~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l~~l~~~~~~L~~L~L~~c~~~~d-~~l~~~~p~L~~L~l~ 496 (541)
.+++|++++|.- ++. ..+..+++|++|++++|. .+. ....+++|++|++++|..... ...+..+++|+.|+++
T Consensus 244 ~L~~L~l~~n~l-~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 244 QLTWLEIGTNQI-SDI--NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp TCCEEECCSSCC-CCC--GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred CCCEEECCCCcc-CCC--hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence 478999998753 322 236678899999999884 442 345789999999999874322 3456789999999999
Q ss_pred CCcccc
Q 045871 497 GCQELL 502 (541)
Q Consensus 497 ~C~~it 502 (541)
+|. ++
T Consensus 320 ~n~-l~ 324 (347)
T 4fmz_A 320 QNH-IT 324 (347)
T ss_dssp SSS-CC
T ss_pred CCc-cc
Confidence 987 44
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.58 E-value=4.4e-16 Score=162.96 Aligned_cols=155 Identities=16% Similarity=0.140 Sum_probs=96.6
Q ss_pred CCCccEEEecCCCCChHHHHHHHhhC-C------------------------------------CCccEEeccCCCCCCH
Q 045871 342 YSKLELLDLSGSSISDSGIGMICNVF-P------------------------------------NTLSRLLLALCPNITS 384 (541)
Q Consensus 342 ~~~L~~L~L~~~~i~~~~l~~l~~~~-~------------------------------------~~L~~L~l~~c~~l~~ 384 (541)
+++|++|+|++|.+++.....+.... . .+|+.|+++++ .++.
T Consensus 211 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~ 289 (455)
T 3v47_A 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS-KIFA 289 (455)
T ss_dssp TCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS-CCCE
T ss_pred cceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc-cccc
Confidence 46788889988888887776665431 1 24555555553 2322
Q ss_pred HHHHHHHhcCCCcceecccCCcCCCCCCCCCCcccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cH-HHHH
Q 045871 385 SGIQFATAQLPLLELMDCGMSICDPTSEDSNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GL-DALC 461 (541)
Q Consensus 385 ~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l-~~l~ 461 (541)
. .......+++|+.|++..................+++|+|++|. +++.....+..+++|++|+|+++. ++ ....
T Consensus 290 ~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 367 (455)
T 3v47_A 290 L-LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367 (455)
T ss_dssp E-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSSCCCEECTTTT
T ss_pred c-chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCCcccccChhhc
Confidence 1 11122457788888753322221111122223447899998874 343434456778999999999884 22 2334
Q ss_pred hcCCCCCeeeccCCCCCCH-hHHHhcCCCCcEecccCCc
Q 045871 462 LNCPELNDLNLNSCRNLRP-ETLLLHCPRLESVHASGCQ 499 (541)
Q Consensus 462 ~~~~~L~~L~L~~c~~~~d-~~l~~~~p~L~~L~l~~C~ 499 (541)
..+++|++|+|++|...+- ...+..+++|+.|+|++++
T Consensus 368 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 368 LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 5689999999999874332 3445789999999999875
No 14
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.56 E-value=4e-14 Score=143.65 Aligned_cols=92 Identities=11% Similarity=0.162 Sum_probs=41.8
Q ss_pred CCCCeEEecCcccchHHHHHHHH--hc-CCCCCEEEcCCCCCCCHHHHHHHH---hcCC-CccEEEecCCCCChHHHHHH
Q 045871 291 PRLQNIHIASIRLSHSVVLALTA--AG-LRGLRMLSLVLGSEITDASVAAIA---STYS-KLELLDLSGSSISDSGIGMI 363 (541)
Q Consensus 291 ~~L~~L~l~~~~i~~~~~~~l~~--~~-~~~L~~L~L~~~~~i~d~~l~~l~---~~~~-~L~~L~L~~~~i~~~~l~~l 363 (541)
++|++|++++|.+.+.+...+.. .. +++|++|+|+++ .+++.++..+. ..++ +|++|+|++|.|++.+...+
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 187 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAEL 187 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHH
Confidence 45666666666554444333221 12 245566665554 34433322221 1232 55566665555555444333
Q ss_pred Hhh---CCCCccEEeccCCCCCCH
Q 045871 364 CNV---FPNTLSRLLLALCPNITS 384 (541)
Q Consensus 364 ~~~---~~~~L~~L~l~~c~~l~~ 384 (541)
+.. ++.+|++|+|++| .+++
T Consensus 188 ~~~l~~~~~~L~~L~Ls~N-~i~~ 210 (362)
T 3goz_A 188 AKFLASIPASVTSLDLSAN-LLGL 210 (362)
T ss_dssp HHHHHTSCTTCCEEECTTS-CGGG
T ss_pred HHHHHhCCCCCCEEECCCC-CCCh
Confidence 322 1125555555553 3444
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.55 E-value=5.5e-14 Score=147.62 Aligned_cols=57 Identities=12% Similarity=0.081 Sum_probs=26.9
Q ss_pred HhCCCccEEEcCCCc--cHHHHHhcCCCCCeeeccCCCCCCHhHHHhcCCCCcEecccCCc
Q 045871 441 IKHCCLKKLSLWGCS--GLDALCLNCPELNDLNLNSCRNLRPETLLLHCPRLESVHASGCQ 499 (541)
Q Consensus 441 ~~~~~L~~L~L~~~~--~l~~l~~~~~~L~~L~L~~c~~~~d~~l~~~~p~L~~L~l~~C~ 499 (541)
..+++|+.|++++|. ++. ....+++|+.|++++|....... ...+++|+.|++++|.
T Consensus 328 ~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 328 SSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEE
T ss_pred ccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCc
Confidence 445555555555552 221 12345555555555554221122 4455556666665554
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.54 E-value=7.3e-14 Score=146.70 Aligned_cols=269 Identities=20% Similarity=0.225 Sum_probs=184.8
Q ss_pred HhhCCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC--------cc
Q 045871 186 LQKCSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG--------IF 257 (541)
Q Consensus 186 ~~~~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~--------~~ 257 (541)
+..+++|++|+++++....... ...+++|++|++++|. ++... . +..+++|+.|.+++ +.
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~-----l~~~~--~-~~~l~~L~~L~l~~n~l~~~~~~~ 153 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQ-----ITDID--P-LKNLTNLNRLELSSNTISDISALS 153 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSC-----CCCCG--G-GTTCTTCSEEEEEEEEECCCGGGT
T ss_pred hhccccCCEEECCCCccccChh----hcCCCCCCEEECCCCC-----CCCCh--H-HcCCCCCCEEECCCCccCCChhhc
Confidence 5667889999999854332221 4567899999998764 33321 1 56788899998876 56
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHH
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAA 337 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~ 337 (541)
.+++|++|++.+ ...+.. .+. .+++|+.|++++|.+.+... + ..+++|++|++.++ .+++...
T Consensus 154 ~l~~L~~L~l~~--~~~~~~-------~~~-~l~~L~~L~l~~n~l~~~~~--l--~~l~~L~~L~l~~n-~l~~~~~-- 216 (466)
T 1o6v_A 154 GLTSLQQLSFGN--QVTDLK-------PLA-NLTTLERLDISSNKVSDISV--L--AKLTNLESLIATNN-QISDITP-- 216 (466)
T ss_dssp TCTTCSEEEEEE--SCCCCG-------GGT-TCTTCCEEECCSSCCCCCGG--G--GGCTTCSEEECCSS-CCCCCGG--
T ss_pred cCCcccEeecCC--cccCch-------hhc-cCCCCCEEECcCCcCCCChh--h--ccCCCCCEEEecCC-ccccccc--
Confidence 788999999974 222211 133 78899999999998765432 2 57899999999887 3433211
Q ss_pred HHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCc
Q 045871 338 IASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSD 417 (541)
Q Consensus 338 l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~ 417 (541)
...+++|++|++++|.+++. ..+... ++|+.|++++|. ++.... ...+++|+.|++........ .....
T Consensus 217 -~~~l~~L~~L~l~~n~l~~~--~~l~~l--~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~~~~ 285 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQLKDI--GTLASL--TNLTDLDLANNQ-ISNLAP---LSGLTKLTELKLGANQISNI--SPLAG 285 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCC--GGGGGC--TTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSSCCCCC--GGGTT
T ss_pred -ccccCCCCEEECCCCCcccc--hhhhcC--CCCCEEECCCCc-cccchh---hhcCCCCCEEECCCCccCcc--ccccC
Confidence 34488999999999987764 234433 689999999964 443211 45688999998543221111 11223
Q ss_pred ccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cHHHHHhcCCCCCeeeccCCCCCCHhHHHhcCCCCcEecc
Q 045871 418 ETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GLDALCLNCPELNDLNLNSCRNLRPETLLLHCPRLESVHA 495 (541)
Q Consensus 418 ~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l~~l~~~~~~L~~L~L~~c~~~~d~~l~~~~p~L~~L~l 495 (541)
...+++|++++|.-.+ ... +..+++|+.|+|++|. ++.. ...+++|++|++++|. +++..-...+++|+.|++
T Consensus 286 l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l 360 (466)
T 1o6v_A 286 LTALTNLELNENQLED-ISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK-VSDVSSLANLTNINWLSA 360 (466)
T ss_dssp CTTCSEEECCSSCCSC-CGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEEC
T ss_pred CCccCeEEcCCCcccC-chh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc-cCCchhhccCCCCCEEeC
Confidence 3447899999875433 221 6788999999999995 3333 4679999999999996 444334568999999999
Q ss_pred cCCc
Q 045871 496 SGCQ 499 (541)
Q Consensus 496 ~~C~ 499 (541)
++|.
T Consensus 361 ~~n~ 364 (466)
T 1o6v_A 361 GHNQ 364 (466)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 9987
No 17
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=3.1e-13 Score=137.07 Aligned_cols=204 Identities=14% Similarity=0.195 Sum_probs=136.6
Q ss_pred hHHHHHhhCCCccEEEecCCCCCChhhH---HHHhhcCC-CccEEEeeecCCcccccCHHHHHHHHhhC-CCCceeeecC
Q 045871 181 FVGSVLQKCSALVRLSLTMESDVDATML---ACIAFSCP-NLESMEIYTSGSAVNRITGDELGRFVADK-RCLASLKMEG 255 (541)
Q Consensus 181 ~l~~l~~~~~~L~~L~L~~~~~~~~~~L---~~l~~~~~-~L~~L~L~~c~~~~~~it~~~l~~~~~~~-~~L~~L~l~~ 255 (541)
.+..+.....+|++|+|+++. +++... ......++ +|++|+|++|. +.......+..++... ++|+.|.+++
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNS--LGFKNSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSC--GGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred HHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCC--CCHHHHHHHHHHHhccCCCccEEECcC
Confidence 455565666678888888853 544333 23334556 88888888764 2333344555555554 7888888877
Q ss_pred --------------ccCC-CCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHH--hcCC-
Q 045871 256 --------------IFNC-PNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTA--AGLR- 317 (541)
Q Consensus 256 --------------~~~~-~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~--~~~~- 317 (541)
+..+ ++|++|+|++|..... ....+...+...+.+|++|++++|.+.+.+...+.. ..++
T Consensus 90 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~--~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 167 (362)
T 3goz_A 90 NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK--SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA 167 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS--CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCT
T ss_pred CcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH--HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCc
Confidence 2234 7999999998664332 233344445522569999999999998766544422 2454
Q ss_pred CCCEEEcCCCCCCCHHHH---HHHHhcC-CCccEEEecCCCCChHHHHHHHhhC---CCCccEEeccCCCCCCHHHHHHH
Q 045871 318 GLRMLSLVLGSEITDASV---AAIASTY-SKLELLDLSGSSISDSGIGMICNVF---PNTLSRLLLALCPNITSSGIQFA 390 (541)
Q Consensus 318 ~L~~L~L~~~~~i~d~~l---~~l~~~~-~~L~~L~L~~~~i~~~~l~~l~~~~---~~~L~~L~l~~c~~l~~~~l~~l 390 (541)
+|++|+|++| .+++.+. ......+ ++|++|+|++|.|++.+...+.... +++|++|+|+++ .+++.+...+
T Consensus 168 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l 245 (362)
T 3goz_A 168 NVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENL 245 (362)
T ss_dssp TCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHH
T ss_pred cccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHH
Confidence 9999999987 5655443 3333446 5999999999999998777665432 258999999995 6777655554
Q ss_pred H
Q 045871 391 T 391 (541)
Q Consensus 391 ~ 391 (541)
.
T Consensus 246 ~ 246 (362)
T 3goz_A 246 K 246 (362)
T ss_dssp H
T ss_pred H
Confidence 4
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.51 E-value=6.4e-16 Score=162.89 Aligned_cols=296 Identities=14% Similarity=0.045 Sum_probs=146.8
Q ss_pred CccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC----------ccCCC
Q 045871 191 ALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG----------IFNCP 260 (541)
Q Consensus 191 ~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~----------~~~~~ 260 (541)
+++.|+|++. .+.... ......+++|++|+|+++. +..+... .+..+++|+.|.+.+ +..++
T Consensus 33 ~l~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~--i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 104 (477)
T 2id5_A 33 ETRLLDLGKN-RIKTLN-QDEFASFPHLEELELNENI--VSAVEPG----AFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104 (477)
T ss_dssp TCSEEECCSS-CCCEEC-TTTTTTCTTCCEEECTTSC--CCEECTT----TTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred CCcEEECCCC-ccceEC-HhHccCCCCCCEEECCCCc--cCEeChh----hhhCCccCCEEECCCCcCCccCcccccCCC
Confidence 4666666652 222110 0112345666666666542 1111111 123445566665544 34556
Q ss_pred CcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHh
Q 045871 261 NMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIAS 340 (541)
Q Consensus 261 ~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~ 340 (541)
+|++|+|+++....... ..+ ..+++|++|++++|.+.......+ ..+++|+.|+|.++ .++...... ..
T Consensus 105 ~L~~L~Ls~n~i~~~~~------~~~-~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~~-l~ 173 (477)
T 2id5_A 105 NLTKLDISENKIVILLD------YMF-QDLYNLKSLEVGDNDLVYISHRAF--SGLNSLEQLTLEKC-NLTSIPTEA-LS 173 (477)
T ss_dssp TCCEEECTTSCCCEECT------TTT-TTCTTCCEEEECCTTCCEECTTSS--TTCTTCCEEEEESC-CCSSCCHHH-HT
T ss_pred CCCEEECCCCccccCCh------hHc-cccccCCEEECCCCccceeChhhc--cCCCCCCEEECCCC-cCcccChhH-hc
Confidence 67777776643322110 012 256677777777765543322222 35667777777665 333222222 23
Q ss_pred cCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCcccc
Q 045871 341 TYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDETC 420 (541)
Q Consensus 341 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~ 420 (541)
.+++|+.|+|++|.++......+... .+|+.|++++|..+..... .+ ....+|+.|++..................
T Consensus 174 ~l~~L~~L~l~~n~i~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~-~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 174 HLHGLIVLRLRHLNINAIRDYSFKRL--YRLKVLEISHWPYLDTMTP-NC-LYGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp TCTTCCEEEEESCCCCEECTTCSCSC--TTCCEEEEECCTTCCEECT-TT-TTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred ccCCCcEEeCCCCcCcEeChhhcccC--cccceeeCCCCccccccCc-cc-ccCccccEEECcCCcccccCHHHhcCccc
Confidence 36677777777766554332223222 4667777766544332100 00 11235555553322111110000112223
Q ss_pred cceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cH-HHHHhcCCCCCeeeccCCCCCCH-hHHHhcCCCCcEeccc
Q 045871 421 DFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GL-DALCLNCPELNDLNLNSCRNLRP-ETLLLHCPRLESVHAS 496 (541)
Q Consensus 421 l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l-~~l~~~~~~L~~L~L~~c~~~~d-~~l~~~~p~L~~L~l~ 496 (541)
++.|+|+++. +.+.....+..+++|+.|+|.++. ++ ...+..+++|+.|+|++|....- ...+..+++|+.|+|+
T Consensus 250 L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 250 LRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp CCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred cCeeECCCCc-CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 5666676654 222222335667888888888774 22 22345688899999988863322 3445678889999998
Q ss_pred CCccccHHHHHHhH
Q 045871 497 GCQELLVDTIHSQV 510 (541)
Q Consensus 497 ~C~~it~~~i~~~~ 510 (541)
+++-.-+-.+.++.
T Consensus 329 ~N~l~c~c~~~~~~ 342 (477)
T 2id5_A 329 SNPLACDCRLLWVF 342 (477)
T ss_dssp SSCEECSGGGHHHH
T ss_pred CCCccCccchHhHH
Confidence 87643344444443
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.51 E-value=9e-15 Score=152.97 Aligned_cols=291 Identities=13% Similarity=0.063 Sum_probs=144.8
Q ss_pred CCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC----------ccCC
Q 045871 190 SALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG----------IFNC 259 (541)
Q Consensus 190 ~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~----------~~~~ 259 (541)
++|++|+|+++ .+.+.. ......+++|++|+|+++.. ...+.. ..+..+++|+.|.+++ +..+
T Consensus 30 ~~l~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~L~~n~~-~~~i~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 102 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELN-ETSFSRLQDLQFLKVEQQTP-GLVIRN----NTFRGLSSLIILKLDYNQFLQLETGAFNGL 102 (455)
T ss_dssp TTCCEEECCSS-CCCEEC-TTTTSSCTTCCEEECCCCST-TCEECT----TTTTTCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred CccCEEEecCC-ccCcCC-hhHhccCccccEEECcCCcc-cceECc----ccccccccCCEEeCCCCccCccChhhccCc
Confidence 57999999984 343211 11235678999999997641 001111 1233455666666655 3445
Q ss_pred CCcceEEecccCCCCCchhHHHHHHH-HhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHH
Q 045871 260 PNMREISLEFSRQENDSTDLTTMADG-LGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAI 338 (541)
Q Consensus 260 ~~L~~L~L~~~~~~~~~~~l~~l~~~-l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l 338 (541)
++|++|++++|...... ... ....+++|++|++++|.+.......++ ..+++|++|+|+++ .++......+
T Consensus 103 ~~L~~L~L~~n~l~~~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~l 174 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAV------LSGNFFKPLTSLEMLVLRDNNIKKIQPASFF-LNMRRFHVLDLTFN-KVKSICEEDL 174 (455)
T ss_dssp TTCCEEECTTSCCBTHH------HHSSTTTTCTTCCEEECCSSBCCSCCCCGGG-GGCTTCCEEECTTC-CBSCCCTTTS
T ss_pred ccCCEEeCCCCCCCccc------cCcccccCcccCCEEECCCCccCccCccccc-CCCCcccEEeCCCC-cccccChhhh
Confidence 66666666654332110 010 112556666666666655433211111 35566666666654 2222111111
Q ss_pred Hh-cCCCccEEEecCCCCChHHHH--------HHHhhCCCCccEEeccCCCCCCHHHHHHHHhc--CCCcceecccCC--
Q 045871 339 AS-TYSKLELLDLSGSSISDSGIG--------MICNVFPNTLSRLLLALCPNITSSGIQFATAQ--LPLLELMDCGMS-- 405 (541)
Q Consensus 339 ~~-~~~~L~~L~L~~~~i~~~~l~--------~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~--~~~L~~l~~~~~-- 405 (541)
.. ..++|+.|++++|.+.+.... .+... .+|++|++++| .++......+... .+.|+.+++...
T Consensus 175 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~--~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN--TSITTLDLSGN-GFKESMAKRFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp GGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT--CEEEEEECTTS-CCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred hccccccccccccccCcccccchhhcccccccccccc--ceeeeEecCCC-cccccchhhhhccccccceeeEeeccccc
Confidence 11 124566666666644432111 01111 57999999995 6776555555433 255555543211
Q ss_pred ----------------------------------cCCCCCCCCCCcccccceeecccchhhcHHHHHHHHhCCCccEEEc
Q 045871 406 ----------------------------------ICDPTSEDSNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSL 451 (541)
Q Consensus 406 ----------------------------------~~~~~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L 451 (541)
...............+++|+|++|.- .+.....+..+++|++|+|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L 330 (455)
T 3v47_A 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDDNAFWGLTHLLKLNL 330 (455)
T ss_dssp TSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEEC
T ss_pred cccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc-cccChhHhcCcccCCEEEC
Confidence 00000000011122356666666542 2222233455667777777
Q ss_pred CCCc--cH-HHHHhcCCCCCeeeccCCCCCCH-hHHHhcCCCCcEecccCCc
Q 045871 452 WGCS--GL-DALCLNCPELNDLNLNSCRNLRP-ETLLLHCPRLESVHASGCQ 499 (541)
Q Consensus 452 ~~~~--~l-~~l~~~~~~L~~L~L~~c~~~~d-~~l~~~~p~L~~L~l~~C~ 499 (541)
+++. ++ ......+++|++|+|++|..... ...+..+++|+.|++++|.
T Consensus 331 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp CSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 7663 22 23334577777777777753221 2334567777777777764
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.50 E-value=9.5e-16 Score=171.10 Aligned_cols=291 Identities=17% Similarity=0.141 Sum_probs=147.1
Q ss_pred hCCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC--------ccCC
Q 045871 188 KCSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG--------IFNC 259 (541)
Q Consensus 188 ~~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~--------~~~~ 259 (541)
.+++|++|+++++...+. +.. ...+++|++|+|++|. +++ .+...+..+++|+.|.+++ ...+
T Consensus 198 ~l~~L~~L~Ls~n~l~~~--~~~-l~~l~~L~~L~Ls~n~-----l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l 268 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTG--IPF-LGDCSALQHLDISGNK-----LSG-DFSRAISTCTELKLLNISSNQFVGPIPPLPL 268 (768)
T ss_dssp TCTTCCEEECCSSCCCSC--CCB-CTTCCSCCEEECCSSC-----CCS-CHHHHTTTCSSCCEEECCSSCCEESCCCCCC
T ss_pred cCCcCCEEECcCCcCCCC--Ccc-cccCCCCCEEECcCCc-----CCC-cccHHHhcCCCCCEEECCCCcccCccCcccc
Confidence 455666666666432211 011 2355677777777643 432 1233345666777777665 1245
Q ss_pred CCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHH
Q 045871 260 PNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIA 339 (541)
Q Consensus 260 ~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~ 339 (541)
++|++|++++|......+ ..+...+++|++|++++|.+.......+ ..+++|++|+|.++. +++..-....
T Consensus 269 ~~L~~L~L~~n~l~~~ip------~~~~~~~~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~-l~~~ip~~~l 339 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIP------DFLSGACDTLTGLDLSGNHFYGAVPPFF--GSCSLLESLALSSNN-FSGELPMDTL 339 (768)
T ss_dssp TTCCEEECCSSEEEESCC------CCSCTTCTTCSEEECCSSEEEECCCGGG--GGCTTCCEEECCSSE-EEEECCHHHH
T ss_pred CCCCEEECcCCccCCccC------HHHHhhcCcCCEEECcCCcCCCccchHH--hcCCCccEEECCCCc-ccCcCCHHHH
Confidence 667777776653321111 1122234666666666665543221112 356666666666552 2110001112
Q ss_pred hcCCCccEEEecCCCCChHHHHHHHhhC-------------------------CCCccEEeccCCCCCCHHHHHHHHhcC
Q 045871 340 STYSKLELLDLSGSSISDSGIGMICNVF-------------------------PNTLSRLLLALCPNITSSGIQFATAQL 394 (541)
Q Consensus 340 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~-------------------------~~~L~~L~l~~c~~l~~~~l~~l~~~~ 394 (541)
..+++|++|+|++|.+++.....+.... ..+|+.|++++|. ++.. +......+
T Consensus 340 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~-~p~~l~~l 417 (768)
T 3rgz_A 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG-FTGK-IPPTLSNC 417 (768)
T ss_dssp TTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE-EEEE-CCGGGGGC
T ss_pred hcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc-cccc-cCHHHhcC
Confidence 2356666666666644322222222221 1345555555542 2110 01112346
Q ss_pred CCcceecccCCcCCCCCCCCCCcccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc---cHHHHHhcCCCCCeee
Q 045871 395 PLLELMDCGMSICDPTSEDSNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS---GLDALCLNCPELNDLN 471 (541)
Q Consensus 395 ~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~---~l~~l~~~~~~L~~L~ 471 (541)
++|+.|++..................++.|+|++|.- .+.....+..+++|++|+|.++. .+......+++|++|+
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 496 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML-EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC-CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc-cCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEE
Confidence 6677766432111111111111223367777777653 32334446677888888888774 2233456788888888
Q ss_pred ccCCCCCCH-hHHHhcCCCCcEecccCCc
Q 045871 472 LNSCRNLRP-ETLLLHCPRLESVHASGCQ 499 (541)
Q Consensus 472 L~~c~~~~d-~~l~~~~p~L~~L~l~~C~ 499 (541)
|++|..... ...+..+++|+.|+|++|.
T Consensus 497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 497 LSNNRLTGEIPKWIGRLENLAILKLSNNS 525 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred ccCCccCCcCChHHhcCCCCCEEECCCCc
Confidence 888874422 3445678889999998886
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.46 E-value=4.4e-13 Score=142.71 Aligned_cols=160 Identities=16% Similarity=0.095 Sum_probs=106.6
Q ss_pred hcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCH-HHHHHHHhcCCCcceecccCCcCCC-CCCCCCCc
Q 045871 340 STYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITS-SGIQFATAQLPLLELMDCGMSICDP-TSEDSNSD 417 (541)
Q Consensus 340 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~-~~l~~l~~~~~~L~~l~~~~~~~~~-~~~~~~~~ 417 (541)
..+++|++|++++|.+++.....+... ++|+.|++++| .++. ..+......+++|+.|++....... ........
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHL--TELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCC--SSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC
T ss_pred hhCCcccEEEeECCccChhhhhhhccC--CCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc
Confidence 458899999999998887555445443 68999999996 5654 2344455679999999864322211 11111122
Q ss_pred ccccceeecccchhhcHHHHHHHHhC-CCccEEEcCCCc--cHHHHHhcCCCCCeeeccCCCCCCH-hHHHhcCCCCcEe
Q 045871 418 ETCDFELQKAFNNKLHLMYQKLIIKH-CCLKKLSLWGCS--GLDALCLNCPELNDLNLNSCRNLRP-ETLLLHCPRLESV 493 (541)
Q Consensus 418 ~~~l~~L~l~~c~~l~~~~~~~l~~~-~~L~~L~L~~~~--~l~~l~~~~~~L~~L~L~~c~~~~d-~~l~~~~p~L~~L 493 (541)
...+++|+|++|.-.+ .. ...+ ++|+.|+|+++. .+..-...+++|++|+|++|...+- ...+..+++|+.|
T Consensus 398 l~~L~~L~Ls~N~l~~-~~---~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTD-TI---FRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp CTTCCEEECCSSCCCG-GG---GGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CccCCEEECcCCCCCc-ch---hhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEE
Confidence 3357999999986322 21 1223 699999999984 4433334799999999999974322 2235679999999
Q ss_pred cccCCccccHHHH
Q 045871 494 HASGCQELLVDTI 506 (541)
Q Consensus 494 ~l~~C~~it~~~i 506 (541)
++++++-.-+-.+
T Consensus 474 ~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 474 WLHTNPWDCSCPR 486 (520)
T ss_dssp ECCSSCBCCCHHH
T ss_pred ECcCCCCcccCCc
Confidence 9999874433333
No 22
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.44 E-value=1.4e-14 Score=161.68 Aligned_cols=290 Identities=16% Similarity=0.178 Sum_probs=174.0
Q ss_pred HhhCCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC----------
Q 045871 186 LQKCSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG---------- 255 (541)
Q Consensus 186 ~~~~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~---------- 255 (541)
+..+++|++|+++++. +... +......+++|++|++++|. ++.. +.. ..+++|+.|.+.+
T Consensus 219 l~~l~~L~~L~Ls~n~-l~~~-~~~~l~~l~~L~~L~Ls~n~-----l~~~-~~~--~~l~~L~~L~L~~n~l~~~ip~~ 288 (768)
T 3rgz_A 219 LGDCSALQHLDISGNK-LSGD-FSRAISTCTELKLLNISSNQ-----FVGP-IPP--LPLKSLQYLSLAENKFTGEIPDF 288 (768)
T ss_dssp CTTCCSCCEEECCSSC-CCSC-HHHHTTTCSSCCEEECCSSC-----CEES-CCC--CCCTTCCEEECCSSEEEESCCCC
T ss_pred cccCCCCCEEECcCCc-CCCc-ccHHHhcCCCCCEEECCCCc-----ccCc-cCc--cccCCCCEEECcCCccCCccCHH
Confidence 4567789999998854 3322 22334567889999988764 2210 000 1456777777765
Q ss_pred cc-CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCC---CCC
Q 045871 256 IF-NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGS---EIT 331 (541)
Q Consensus 256 ~~-~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~---~i~ 331 (541)
+. .+++|++|++++|......+ ..+. .+++|++|++++|.+........+ ..+++|++|+|+++. .+.
T Consensus 289 ~~~~~~~L~~L~Ls~n~l~~~~p------~~~~-~l~~L~~L~L~~n~l~~~ip~~~l-~~l~~L~~L~Ls~n~l~~~~p 360 (768)
T 3rgz_A 289 LSGACDTLTGLDLSGNHFYGAVP------PFFG-SCSLLESLALSSNNFSGELPMDTL-LKMRGLKVLDLSFNEFSGELP 360 (768)
T ss_dssp SCTTCTTCSEEECCSSEEEECCC------GGGG-GCTTCCEEECCSSEEEEECCHHHH-TTCTTCCEEECCSSEEEECCC
T ss_pred HHhhcCcCCEEECcCCcCCCccc------hHHh-cCCCccEEECCCCcccCcCCHHHH-hcCCCCCEEeCcCCccCcccc
Confidence 11 24777777777654322211 1122 566777777777765422211111 356667777776652 111
Q ss_pred HHHHHHHH-----------------------hcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHH
Q 045871 332 DASVAAIA-----------------------STYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQ 388 (541)
Q Consensus 332 d~~l~~l~-----------------------~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~ 388 (541)
..+..+. ..+++|++|++++|.+++.....+... ++|+.|++++|. ++....
T Consensus 361 -~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~Ls~N~-l~~~~p- 435 (768)
T 3rgz_A 361 -ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC--SELVSLHLSFNY-LSGTIP- 435 (768)
T ss_dssp -TTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC--TTCCEEECCSSE-EESCCC-
T ss_pred -HHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC--CCCCEEECcCCc-ccCccc-
Confidence 1111111 014568888888876665433445444 689999999963 432111
Q ss_pred HHHhcCCCcceecccCCcCCCCCCCCCCcccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc---cHHHHHhcCC
Q 045871 389 FATAQLPLLELMDCGMSICDPTSEDSNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS---GLDALCLNCP 465 (541)
Q Consensus 389 ~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~---~l~~l~~~~~ 465 (541)
.....+++|+.|++..................+++|+|++|.- .+.....+..+++|+.|+|++|. .+......++
T Consensus 436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l-~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL-TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC-CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc-cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 1234689999998543221111111112233479999999864 33444557889999999999995 3334456799
Q ss_pred CCCeeeccCCCCCCH-hHHHhcCCCCcEecccCCc
Q 045871 466 ELNDLNLNSCRNLRP-ETLLLHCPRLESVHASGCQ 499 (541)
Q Consensus 466 ~L~~L~L~~c~~~~d-~~l~~~~p~L~~L~l~~C~ 499 (541)
+|++|+|++|..... ...+..+++|+.|++++|.
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 999999999985422 3446789999999999986
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.44 E-value=1.6e-14 Score=152.09 Aligned_cols=262 Identities=16% Similarity=0.103 Sum_probs=169.9
Q ss_pred CCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC----------ccCCCCcceEEecccCCCCCchhHHHHHHH
Q 045871 216 PNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG----------IFNCPNMREISLEFSRQENDSTDLTTMADG 285 (541)
Q Consensus 216 ~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~----------~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~ 285 (541)
++|+.|+|+++. +..+... .+..+++|+.|.+.+ +..+++|++|+|+++....-.. .
T Consensus 32 ~~l~~L~L~~n~--l~~~~~~----~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------~ 98 (477)
T 2id5_A 32 TETRLLDLGKNR--IKTLNQD----EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL-------G 98 (477)
T ss_dssp TTCSEEECCSSC--CCEECTT----TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCT-------T
T ss_pred CCCcEEECCCCc--cceECHh----HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCc-------c
Confidence 689999999754 2223222 245678899999876 5578899999998754332211 1
Q ss_pred HhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHh
Q 045871 286 LGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICN 365 (541)
Q Consensus 286 l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~ 365 (541)
....+++|++|++++|.+.......+ ..+++|++|+|.++ .++...... ...+++|++|+|++|.++......+..
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~ 174 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMF--QDLYNLKSLEVGDN-DLVYISHRA-FSGLNSLEQLTLEKCNLTSIPTEALSH 174 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEEECCT-TCCEECTTS-STTCTTCCEEEEESCCCSSCCHHHHTT
T ss_pred cccCCCCCCEEECCCCccccCChhHc--cccccCCEEECCCC-ccceeChhh-ccCCCCCCEEECCCCcCcccChhHhcc
Confidence 22268899999999987765422222 46889999999876 333221111 234889999999999887755555655
Q ss_pred hCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCcccccceeecccchhhcHHHHHHHHhCCC
Q 045871 366 VFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDETCDFELQKAFNNKLHLMYQKLIIKHCC 445 (541)
Q Consensus 366 ~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~ 445 (541)
. ++|+.|+++++ .++.... .....+++|+.|++..................+++|+|++|. ++......+..+++
T Consensus 175 l--~~L~~L~l~~n-~i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 175 L--HGLIVLRLRHL-NINAIRD-YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVY 249 (477)
T ss_dssp C--TTCCEEEEESC-CCCEECT-TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTT
T ss_pred c--CCCcEEeCCCC-cCcEeCh-hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccc
Confidence 5 68999999985 3432111 112457888888754311100000011111257899999875 44344456788999
Q ss_pred ccEEEcCCCc--cH-HHHHhcCCCCCeeeccCCCCCCH-hHHHhcCCCCcEecccCCc
Q 045871 446 LKKLSLWGCS--GL-DALCLNCPELNDLNLNSCRNLRP-ETLLLHCPRLESVHASGCQ 499 (541)
Q Consensus 446 L~~L~L~~~~--~l-~~l~~~~~~L~~L~L~~c~~~~d-~~l~~~~p~L~~L~l~~C~ 499 (541)
|+.|+|+++. .+ ...+..+++|++|+|++|....- ...+..+++|+.|+|++|.
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 9999999884 22 12345789999999999874322 3345689999999999985
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.42 E-value=7.1e-14 Score=143.20 Aligned_cols=292 Identities=15% Similarity=0.074 Sum_probs=172.5
Q ss_pred CCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC----------ccC
Q 045871 189 CSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG----------IFN 258 (541)
Q Consensus 189 ~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~----------~~~ 258 (541)
..+++.|++.++ .++.- -..+...+++|++|+|+++. +..+... .+..+++|+.|.+.+ +..
T Consensus 44 l~~l~~l~l~~~-~l~~l-~~~~~~~l~~L~~L~L~~n~--i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKL-PAALLDSFRQVELLNLNDLQ--IEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GCCCSEEEEESC-EESEE-CTHHHHHCCCCSEEECTTSC--CCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCceEEEecCC-chhhC-ChhHhcccccCcEEECCCCc--ccccChh----hccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 468999999984 23221 12233567999999999764 2222222 235678899998876 457
Q ss_pred CCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHH
Q 045871 259 CPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAI 338 (541)
Q Consensus 259 ~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l 338 (541)
+++|++|+++++....-. ..+...+++|++|++++|.+.......+ ..+++|+.|+|.++ .+++..
T Consensus 116 l~~L~~L~L~~n~l~~l~-------~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~---- 181 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLP-------RGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLSSN-RLTHVD---- 181 (390)
T ss_dssp CTTCCEEECCSSCCCCCC-------TTTTTTCTTCCEEECCSSCCCBCCTTTT--SSCTTCCEEECCSS-CCSBCC----
T ss_pred CCCCCEEECCCCccCcCC-------HHHhcCCCCCcEEECCCCccCccChhhc--cCCCCCCEEECCCC-cCCccc----
Confidence 788999999886433211 1222368899999999987764332222 46788999999876 344322
Q ss_pred HhcCCCccEEEecCCCCChHHHH--------------HHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccC
Q 045871 339 ASTYSKLELLDLSGSSISDSGIG--------------MICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGM 404 (541)
Q Consensus 339 ~~~~~~L~~L~L~~~~i~~~~l~--------------~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~ 404 (541)
...+++|++|++++|.++..... .+....+.+|+.|+++++ .+++. .....+++|+.|++..
T Consensus 182 ~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~Ls~ 257 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN-NLTDT---AWLLNYPGLVEVDLSY 257 (390)
T ss_dssp GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSS-CCCCC---GGGGGCTTCSEEECCS
T ss_pred cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCC-CCccc---HHHcCCCCccEEECCC
Confidence 12355666655555544331000 000011236777777774 34432 1234578888887533
Q ss_pred CcCCCCCCCCCCcccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cHHHHHhcCCCCCeeeccCCCCCCHhH
Q 045871 405 SICDPTSEDSNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GLDALCLNCPELNDLNLNSCRNLRPET 482 (541)
Q Consensus 405 ~~~~~~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l~~l~~~~~~L~~L~L~~c~~~~d~~ 482 (541)
................+++|+|+++.-.. . ...+..+++|++|+|+++. .+......+++|++|+|++|... +..
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~-~~~ 334 (390)
T 3o6n_A 258 NELEKIMYHPFVKMQRLERLYISNNRLVA-L-NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLK 334 (390)
T ss_dssp SCCCEEESGGGTTCSSCCEEECCSSCCCE-E-ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCC-CCC
T ss_pred CcCCCcChhHccccccCCEEECCCCcCcc-c-CcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccc-eeC
Confidence 22111111111223346888888864322 1 1112456888888888884 33333345788999999888743 222
Q ss_pred HHhcCCCCcEecccCCccccHHHHHHhHh
Q 045871 483 LLLHCPRLESVHASGCQELLVDTIHSQVK 511 (541)
Q Consensus 483 l~~~~p~L~~L~l~~C~~it~~~i~~~~~ 511 (541)
...+++|+.|++++++ ++...+.....
T Consensus 335 -~~~~~~L~~L~l~~N~-~~~~~~~~~~~ 361 (390)
T 3o6n_A 335 -LSTHHTLKNLTLSHND-WDCNSLRALFR 361 (390)
T ss_dssp -CCTTCCCSEEECCSSC-EEHHHHHHHTT
T ss_pred -chhhccCCEEEcCCCC-ccchhHHHHHH
Confidence 4578899999999976 77766666554
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.42 E-value=2.2e-12 Score=138.14 Aligned_cols=153 Identities=16% Similarity=0.089 Sum_probs=90.3
Q ss_pred hcCCCccEEEecCCCCChHHHHHHH--hhCCCCccEEeccCCCCCCHHH-HHHHHhcCCCcceecccCCcCCCCCCCCCC
Q 045871 340 STYSKLELLDLSGSSISDSGIGMIC--NVFPNTLSRLLLALCPNITSSG-IQFATAQLPLLELMDCGMSICDPTSEDSNS 416 (541)
Q Consensus 340 ~~~~~L~~L~L~~~~i~~~~l~~l~--~~~~~~L~~L~l~~c~~l~~~~-l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~ 416 (541)
..+++|++|+|++|.+++....... ..+ ++|+.|++++| .++... .......+++|+.|++.......... ...
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l-~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~ 407 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAW-PSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SCQ 407 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSS-TTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCS-CCC
T ss_pred hcCccccEEEccCCccccccccchhhhhcc-ccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCCCccCCh-hhc
Confidence 3478888888888888876543321 122 57888888885 454332 22344567888888753321111100 000
Q ss_pred ccc---------------------ccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cHHHHHhcCCCCCeeecc
Q 045871 417 DET---------------------CDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GLDALCLNCPELNDLNLN 473 (541)
Q Consensus 417 ~~~---------------------~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l~~l~~~~~~L~~L~L~ 473 (541)
... .+++|+|++|. +++ .+..+++|++|+|+++. .+.. ...+++|+.|+|+
T Consensus 408 ~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~-l~~----~~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls 481 (549)
T 2z81_A 408 WPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNN-LDS----FSLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKIS 481 (549)
T ss_dssp CCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSC-CSC----CCCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECC
T ss_pred ccccccEEECCCCCcccccchhcCCceEEECCCCC-hhh----hcccCChhcEEECCCCccCcCCC-cccCccCCEEecC
Confidence 011 24555555543 221 12357788888888874 3332 2358889999999
Q ss_pred CCCCCCH-hHHHhcCCCCcEecccCCccc
Q 045871 474 SCRNLRP-ETLLLHCPRLESVHASGCQEL 501 (541)
Q Consensus 474 ~c~~~~d-~~l~~~~p~L~~L~l~~C~~i 501 (541)
+|...+- ...+..+++|+.|++++|+-.
T Consensus 482 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 482 RNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp SSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred CCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 8864322 344678899999999988743
No 26
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.41 E-value=2.4e-13 Score=121.14 Aligned_cols=106 Identities=19% Similarity=0.249 Sum_probs=90.7
Q ss_pred CCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhc---CCCccEEEecCC-CCChHHHHHHHhh
Q 045871 291 PRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIAST---YSKLELLDLSGS-SISDSGIGMICNV 366 (541)
Q Consensus 291 ~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~---~~~L~~L~L~~~-~i~~~~l~~l~~~ 366 (541)
.+|++|++++|.+++.++..+ ..|++|++|+|.+|..|+|.++..+... +++|++|+|++| .|||.|+..+...
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L--~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM--EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG--TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHHh--cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 368888888888888887777 5799999999999999999999999873 578999999999 7999999999864
Q ss_pred CCCCccEEeccCCCCCCHHHH--HHHHhcCCCccee
Q 045871 367 FPNTLSRLLLALCPNITSSGI--QFATAQLPLLELM 400 (541)
Q Consensus 367 ~~~~L~~L~l~~c~~l~~~~l--~~l~~~~~~L~~l 400 (541)
++|++|+|++|+.+++.++ ..+.+.+|.++.-
T Consensus 139 --~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~ 172 (176)
T 3e4g_A 139 --RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172 (176)
T ss_dssp --TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEEE
T ss_pred --CCCCEEECCCCCCCCchHHHHHHHHHHCCCcEEE
Confidence 6999999999999998774 5566778888764
No 27
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.41 E-value=7.4e-15 Score=159.45 Aligned_cols=286 Identities=15% Similarity=0.086 Sum_probs=169.0
Q ss_pred CccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC----------ccCCC
Q 045871 191 ALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG----------IFNCP 260 (541)
Q Consensus 191 ~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~----------~~~~~ 260 (541)
+|++|+++++ .+.+.. ......+++|++|+++++. ++ .+...+..+++|+.|.+.+ +..++
T Consensus 255 ~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-----l~--~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 325 (606)
T 3t6q_A 255 SVESINLQKH-YFFNIS-SNTFHCFSGLQELDLTATH-----LS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325 (606)
T ss_dssp EEEEEECTTC-CCSSCC-TTTTTTCTTCSEEECTTSC-----CS--CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred ceeEEEeecC-ccCccC-HHHhccccCCCEEeccCCc-----cC--CCChhhcccccCCEEECccCCcCcCchhhhhccC
Confidence 4667777763 222110 1112345788888887653 22 1111234566777777765 45678
Q ss_pred CcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHH--HHHHHHhcCCCCCEEEcCCCCCCCHHHHHHH
Q 045871 261 NMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSV--VLALTAAGLRGLRMLSLVLGSEITDASVAAI 338 (541)
Q Consensus 261 ~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~--~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l 338 (541)
+|++|++++|....... ...+. .+++|++|++++|.+.... ...+ ..+++|++|+|+++ .+++.... .
T Consensus 326 ~L~~L~l~~n~~~~~~~-----~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~-~ 395 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELG-----TGCLE-NLENLRELDLSHDDIETSDCCNLQL--RNLSHLQSLNLSYN-EPLSLKTE-A 395 (606)
T ss_dssp TCSEEECCSCSSCCBCC-----SSTTT-TCTTCCEEECCSSCCCEEEESTTTT--TTCTTCCEEECCSC-SCEEECTT-T
T ss_pred cCCEEECCCCCcccccc-----hhhhh-ccCcCCEEECCCCccccccCcchhc--ccCCCCCEEECCCC-cCCcCCHH-H
Confidence 88888888765432211 01122 6788888888888775542 1122 46788888888876 33321111 2
Q ss_pred HhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCC---CCCCC
Q 045871 339 ASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPT---SEDSN 415 (541)
Q Consensus 339 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~---~~~~~ 415 (541)
...+++|++|++++|.++..........+ ++|+.|++++|. ++.... .....+++|+.|++........ .....
T Consensus 396 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 472 (606)
T 3t6q_A 396 FKECPQLELLDLAFTRLKVKDAQSPFQNL-HLLKVLNLSHSL-LDISSE-QLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472 (606)
T ss_dssp TTTCTTCSEEECTTCCEECCTTCCTTTTC-TTCCEEECTTCC-CBTTCT-TTTTTCTTCCEEECTTCBCGGGEECSSCGG
T ss_pred hcCCccCCeEECCCCcCCCcccchhhhCc-ccCCEEECCCCc-cCCcCH-HHHhCCCCCCEEECCCCCCCccccccchhh
Confidence 23478888898888876644322212222 578888888863 432211 1224578888887533211110 00111
Q ss_pred CcccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cH-HHHHhcCCCCCeeeccCCCCCCH-hHHHhcCCCCc
Q 045871 416 SDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GL-DALCLNCPELNDLNLNSCRNLRP-ETLLLHCPRLE 491 (541)
Q Consensus 416 ~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l-~~l~~~~~~L~~L~L~~c~~~~d-~~l~~~~p~L~ 491 (541)
.....+++|+|++|.- .+.....+..+++|++|+|+++. ++ ......++.| .|+|++|..... ...+..+++|+
T Consensus 473 ~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~ 550 (606)
T 3t6q_A 473 QTLGRLEILVLSFCDL-SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQR 550 (606)
T ss_dssp GGCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSS
T ss_pred ccCCCccEEECCCCcc-CccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCC
Confidence 2233468899998753 33334456778999999999885 22 2344567888 999999875432 34456788999
Q ss_pred EecccCCcc
Q 045871 492 SVHASGCQE 500 (541)
Q Consensus 492 ~L~l~~C~~ 500 (541)
.|++++++-
T Consensus 551 ~L~l~~N~~ 559 (606)
T 3t6q_A 551 TINLRQNPL 559 (606)
T ss_dssp EEECTTCCE
T ss_pred EEeCCCCCc
Confidence 999999873
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.40 E-value=2.2e-14 Score=155.64 Aligned_cols=228 Identities=17% Similarity=0.128 Sum_probs=123.5
Q ss_pred ccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHH
Q 045871 256 IFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASV 335 (541)
Q Consensus 256 ~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l 335 (541)
+..+++|++|+++++... ..+ ..+. .+++|++|++++|.+.......+ ..+++|++|++.++.......
T Consensus 274 ~~~l~~L~~L~l~~n~l~-~lp------~~l~-~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~- 342 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS-ELP------SGLV-GLSTLKKLVLSANKFENLCQISA--SNFPSLTHLSIKGNTKRLELG- 342 (606)
T ss_dssp TTTCTTCSEEECTTSCCS-CCC------SSCC-SCTTCCEEECTTCCCSBGGGGCG--GGCTTCSEEECCSCSSCCBCC-
T ss_pred hccccCCCEEeccCCccC-CCC------hhhc-ccccCCEEECccCCcCcCchhhh--hccCcCCEEECCCCCcccccc-
Confidence 345678888888876433 211 1133 67889999999888765433222 468888888888763211110
Q ss_pred HHHHhcCCCccEEEecCCCCChHH--HHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCC
Q 045871 336 AAIASTYSKLELLDLSGSSISDSG--IGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSED 413 (541)
Q Consensus 336 ~~l~~~~~~L~~L~L~~~~i~~~~--l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~ 413 (541)
......+++|++|++++|.++... ...+... ++|++|++++|. ++.... .....+++|+.+++...........
T Consensus 343 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~ 418 (606)
T 3t6q_A 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNL--SHLQSLNLSYNE-PLSLKT-EAFKECPQLELLDLAFTRLKVKDAQ 418 (606)
T ss_dssp SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC--TTCCEEECCSCS-CEEECT-TTTTTCTTCSEEECTTCCEECCTTC
T ss_pred hhhhhccCcCCEEECCCCccccccCcchhcccC--CCCCEEECCCCc-CCcCCH-HHhcCCccCCeEECCCCcCCCcccc
Confidence 111234788888888888776543 2223333 578888888753 322111 1123467777776432211111000
Q ss_pred -CCCcccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCccHH------HHHhcCCCCCeeeccCCCCCCH-hHHHh
Q 045871 414 -SNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCSGLD------ALCLNCPELNDLNLNSCRNLRP-ETLLL 485 (541)
Q Consensus 414 -~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~------~l~~~~~~L~~L~L~~c~~~~d-~~l~~ 485 (541)
.......+++|++++|.- .+.....+..+++|++|+|+++.--. .....+++|++|+|++|..... ...+.
T Consensus 419 ~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 497 (606)
T 3t6q_A 419 SPFQNLHLLKVLNLSHSLL-DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497 (606)
T ss_dssp CTTTTCTTCCEEECTTCCC-BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTT
T ss_pred hhhhCcccCCEEECCCCcc-CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhc
Confidence 011223356777776642 22333345556677777777664111 2234566677777766653221 22345
Q ss_pred cCCCCcEecccCCc
Q 045871 486 HCPRLESVHASGCQ 499 (541)
Q Consensus 486 ~~p~L~~L~l~~C~ 499 (541)
.+++|+.|++++|.
T Consensus 498 ~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 498 SLKMMNHVDLSHNR 511 (606)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cccCCCEEECCCCc
Confidence 56666666666654
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.39 E-value=6.1e-13 Score=144.10 Aligned_cols=287 Identities=16% Similarity=0.102 Sum_probs=177.1
Q ss_pred HHHhhCCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC--------
Q 045871 184 SVLQKCSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG-------- 255 (541)
Q Consensus 184 ~l~~~~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~-------- 255 (541)
.++..+++|+.|+|+++. +.... ......+++|++|+|+++. +..+.. ..+..+++|+.|.+++
T Consensus 69 ~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~--l~~~~~----~~~~~l~~L~~L~L~~n~l~~l~~ 140 (597)
T 3oja_B 69 ALLDSFRQVELLNLNDLQ-IEEID-TYAFAYAHTIQKLYMGFNA--IRYLPP----HVFQNVPLLTVLVLERNDLSSLPR 140 (597)
T ss_dssp HHHHHCCCCSEEECTTSC-CCEEC-TTTTTTCTTCCEEECCSSC--CCCCCT----TTTTTCTTCCEEECCSSCCCCCCT
T ss_pred HHHccCCCCcEEECCCCC-CCCCC-hHHhcCCCCCCEEECCCCc--CCCCCH----HHHcCCCCCCEEEeeCCCCCCCCH
Confidence 344567788888888743 33211 1112456788888888754 222222 1234566777777766
Q ss_pred --ccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHH
Q 045871 256 --IFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDA 333 (541)
Q Consensus 256 --~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~ 333 (541)
+..+++|++|+|++|....... ..+. .+++|+.|++++|.+.... + ..+++|+.|++.++ .++.
T Consensus 141 ~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~-~l~~L~~L~L~~N~l~~~~---~--~~l~~L~~L~l~~n-~l~~- 206 (597)
T 3oja_B 141 GIFHNTPKLTTLSMSNNNLERIED------DTFQ-ATTSLQNLQLSSNRLTHVD---L--SLIPSLFHANVSYN-LLST- 206 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCT------TTTT-TCTTCCEEECTTSCCSBCC---G--GGCTTCSEEECCSS-CCSE-
T ss_pred HHhccCCCCCEEEeeCCcCCCCCh------hhhh-cCCcCcEEECcCCCCCCcC---h--hhhhhhhhhhcccC-cccc-
Confidence 3567788888888764332211 1122 6778888888888766532 1 45788888888765 3332
Q ss_pred HHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCC
Q 045871 334 SVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSED 413 (541)
Q Consensus 334 ~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~ 413 (541)
....++|++|++++|.++... ...+.+|+.|++++| .+++. .....+++|+.|++...........
T Consensus 207 -----l~~~~~L~~L~ls~n~l~~~~-----~~~~~~L~~L~L~~n-~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 207 -----LAIPIAVEELDASHNSINVVR-----GPVNVELTILKLQHN-NLTDT---AWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp -----EECCTTCSEEECCSSCCCEEE-----CSCCSCCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred -----ccCCchhheeeccCCcccccc-----cccCCCCCEEECCCC-CCCCC---hhhccCCCCCEEECCCCccCCCCHH
Confidence 123567888888888776421 112357999999886 45432 2234688899998543221111111
Q ss_pred CCCcccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cHHHHHhcCCCCCeeeccCCCCCCHhHHHhcCCCCc
Q 045871 414 SNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GLDALCLNCPELNDLNLNSCRNLRPETLLLHCPRLE 491 (541)
Q Consensus 414 ~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l~~l~~~~~~L~~L~L~~c~~~~d~~l~~~~p~L~ 491 (541)
.......++.|+|++|.-.+ +...+..+++|+.|+|++|. .+......+++|+.|+|++|...+.. ...+++|+
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~ 348 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLK 348 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCS
T ss_pred HhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCC
Confidence 12223347889998865322 11123457899999999984 44333456899999999999854322 46789999
Q ss_pred EecccCCccccHHHHHHhHh
Q 045871 492 SVHASGCQELLVDTIHSQVK 511 (541)
Q Consensus 492 ~L~l~~C~~it~~~i~~~~~ 511 (541)
.|+|++++ ++...+.....
T Consensus 349 ~L~l~~N~-~~~~~~~~~~~ 367 (597)
T 3oja_B 349 NLTLSHND-WDCNSLRALFR 367 (597)
T ss_dssp EEECCSSC-EEHHHHHHHTT
T ss_pred EEEeeCCC-CCChhHHHHHH
Confidence 99999987 76666655543
No 30
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=8.2e-12 Score=126.74 Aligned_cols=162 Identities=14% Similarity=0.168 Sum_probs=92.1
Q ss_pred CCCCeEEecCcccchHHHHHHHHh---cCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhC
Q 045871 291 PRLQNIHIASIRLSHSVVLALTAA---GLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVF 367 (541)
Q Consensus 291 ~~L~~L~l~~~~i~~~~~~~l~~~---~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~ 367 (541)
+.|++|++++|.+++.....+... .+++|+.|+|+++ .+++.++..+...+++|++|+|++|.|++.++..++...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 456666666666665554433221 2346666666655 566666666665566666666666666666666654331
Q ss_pred ---CCCccEEeccCCCCCCHHHHHHHHh---cCCCcceecccCCcCCCCCCCCCCcccccceeecccchhhcHH----HH
Q 045871 368 ---PNTLSRLLLALCPNITSSGIQFATA---QLPLLELMDCGMSICDPTSEDSNSDETCDFELQKAFNNKLHLM----YQ 437 (541)
Q Consensus 368 ---~~~L~~L~l~~c~~l~~~~l~~l~~---~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~~l~~~----~~ 437 (541)
..+|++|+|++| .+++.++..++. .++.|+.|+ |++|. +++. +.
T Consensus 151 ~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~------------------------Ls~N~-l~~~g~~~L~ 204 (372)
T 3un9_A 151 LHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLS------------------------LLHTG-LGDEGLELLA 204 (372)
T ss_dssp HSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEE------------------------CTTSS-CHHHHHHHHH
T ss_pred HhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEe------------------------CCCCC-CCcHHHHHHH
Confidence 135666666664 466655555542 233333332 33322 2222 22
Q ss_pred HHHHhCCCccEEEcCCCc----cHH---HHHhcCCCCCeeeccCCCCCCH
Q 045871 438 KLIIKHCCLKKLSLWGCS----GLD---ALCLNCPELNDLNLNSCRNLRP 480 (541)
Q Consensus 438 ~~l~~~~~L~~L~L~~~~----~l~---~l~~~~~~L~~L~L~~c~~~~d 480 (541)
..+...++|++|+|++|. +.. .....+++|++|+|++|. +++
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~ 253 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE-LSS 253 (372)
T ss_dssp HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCH
T ss_pred HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCH
Confidence 334566788888888884 222 233457888888888886 555
No 31
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.38 E-value=4.5e-13 Score=143.52 Aligned_cols=103 Identities=15% Similarity=0.255 Sum_probs=44.6
Q ss_pred hCCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC-----------c
Q 045871 188 KCSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG-----------I 256 (541)
Q Consensus 188 ~~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~-----------~ 256 (541)
.+++|++|+++++ .+.... ......+++|++|+++++. ...+.. ..+..+++|+.|.+++ +
T Consensus 48 ~l~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~Ls~n~--l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 119 (549)
T 2z81_A 48 ACANLQVLILKSS-RINTIE-GDAFYSLGSLEHLDLSDNH--LSSLSS----SWFGPLSSLKYLNLMGNPYQTLGVTSLF 119 (549)
T ss_dssp SCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECTTSC--CCSCCH----HHHTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred cCCcccEEECCCC-CcCccC-hhhccccccCCEEECCCCc--cCccCH----HHhccCCCCcEEECCCCcccccchhhhh
Confidence 3455666666553 222100 0111234556666665532 111111 1123455555555544 2
Q ss_pred cCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccc
Q 045871 257 FNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLS 304 (541)
Q Consensus 257 ~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~ 304 (541)
..+++|++|++++|....... ...+. .+++|++|++++|.+.
T Consensus 120 ~~l~~L~~L~L~~n~~~~~~~-----~~~~~-~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 120 PNLTNLQTLRIGNVETFSEIR-----RIDFA-GLTSLNELEIKALSLR 161 (549)
T ss_dssp TTCTTCCEEEEEESSSCCEEC-----TTTTT-TCCEEEEEEEEETTCC
T ss_pred hccCCccEEECCCCccccccC-----Hhhhh-cccccCeeeccCCccc
Confidence 345566666666544332211 00122 4555666666555443
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.38 E-value=3.9e-14 Score=154.59 Aligned_cols=191 Identities=12% Similarity=0.122 Sum_probs=104.3
Q ss_pred hCCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhh------CCCCceeeecC------
Q 045871 188 KCSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVAD------KRCLASLKMEG------ 255 (541)
Q Consensus 188 ~~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~------~~~L~~L~l~~------ 255 (541)
.+++|++|+|+++...+. +......+++|++|+|+++. .++...+...+.. +++|+.|.+.+
T Consensus 247 ~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~----~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i 320 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTK--LPTFLKALPEMQLINVACNR----GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320 (636)
T ss_dssp GCTTCCEEEEECCTTCSS--CCTTTTTCSSCCEEECTTCT----TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC
T ss_pred ccCCCCEEEecCCcCCcc--ChHHHhcCCCCCEEECcCCC----CCccccchHHHHhhhccccCCCCCEEECCCCcCCcc
Confidence 567899999998643321 11222456899999998742 1665334333333 37788888765
Q ss_pred -----ccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCC-CCEEEcCCCCC
Q 045871 256 -----IFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRG-LRMLSLVLGSE 329 (541)
Q Consensus 256 -----~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~-L~~L~L~~~~~ 329 (541)
+..+++|++|++++|...+..+ .+. .+++|+.|++++|.+..-. ..+ ..+++ |+.|+|+++ .
T Consensus 321 p~~~~l~~l~~L~~L~L~~N~l~g~ip-------~~~-~l~~L~~L~L~~N~l~~lp-~~l--~~l~~~L~~L~Ls~N-~ 388 (636)
T 4eco_A 321 PVETSLQKMKKLGMLECLYNQLEGKLP-------AFG-SEIKLASLNLAYNQITEIP-ANF--CGFTEQVENLSFAHN-K 388 (636)
T ss_dssp CCHHHHTTCTTCCEEECCSCCCEEECC-------CCE-EEEEESEEECCSSEEEECC-TTS--EEECTTCCEEECCSS-C
T ss_pred CchhhhccCCCCCEEeCcCCcCccchh-------hhC-CCCCCCEEECCCCcccccc-Hhh--hhhcccCcEEEccCC-c
Confidence 3456778888888754331211 122 5567777777777655110 111 35566 777777765 2
Q ss_pred CCHHHHHHHHhc--CCCccEEEecCCCCChHHHHHHH-------hhCCCCccEEeccCCCCCCHHHHHHHHhcCCCccee
Q 045871 330 ITDASVAAIAST--YSKLELLDLSGSSISDSGIGMIC-------NVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELM 400 (541)
Q Consensus 330 i~d~~l~~l~~~--~~~L~~L~L~~~~i~~~~l~~l~-------~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l 400 (541)
++. +...... +++|++|++++|.++......+. .. .+|+.|+++++ .++. -...+...+++|+.|
T Consensus 389 l~~--lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~--~~L~~L~Ls~N-~l~~-lp~~~~~~l~~L~~L 462 (636)
T 4eco_A 389 LKY--IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG--INVSSINLSNN-QISK-FPKELFSTGSPLSSI 462 (636)
T ss_dssp CSS--CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC--CCEEEEECCSS-CCCS-CCTHHHHTTCCCSEE
T ss_pred Ccc--cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC--CCCCEEECcCC-ccCc-CCHHHHccCCCCCEE
Confidence 331 1111111 23677777777766553322222 11 36777777764 3431 112233446666666
Q ss_pred cc
Q 045871 401 DC 402 (541)
Q Consensus 401 ~~ 402 (541)
++
T Consensus 463 ~L 464 (636)
T 4eco_A 463 NL 464 (636)
T ss_dssp EC
T ss_pred EC
Confidence 64
No 33
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.37 E-value=1.8e-13 Score=152.93 Aligned_cols=287 Identities=13% Similarity=0.130 Sum_probs=143.6
Q ss_pred hCCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHH-------hhCCCCceeeecC-----
Q 045871 188 KCSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFV-------ADKRCLASLKMEG----- 255 (541)
Q Consensus 188 ~~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~-------~~~~~L~~L~l~~----- 255 (541)
.+++|+.|+|+++...+. +......+++|+.|+|+++. .++...+...+ ..+++|+.|.+.+
T Consensus 489 ~L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~Ls~N~----~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ 562 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQ--LPDFLYDLPELQSLNIACNR----GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562 (876)
T ss_dssp GCTTCCEEEEESCTTCCS--CCGGGGGCSSCCEEECTTCT----TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB
T ss_pred cCCCCCEEECcCCCCCcc--ChHHHhCCCCCCEEECcCCC----CcccccchHHHHhhhhcccccCCccEEEeeCCcCCc
Confidence 567788888887643321 11223466888888888642 15542332222 2344777777765
Q ss_pred ------ccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCC-CCEEEcCCCC
Q 045871 256 ------IFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRG-LRMLSLVLGS 328 (541)
Q Consensus 256 ------~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~-L~~L~L~~~~ 328 (541)
+..+++|++|+|++|... ..+ .+. .+++|+.|++++|.+.. ....+ ..+++ |+.|+|+++
T Consensus 563 ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-------~~~-~L~~L~~L~Ls~N~l~~-lp~~l--~~l~~~L~~L~Ls~N- 629 (876)
T 4ecn_A 563 FPASASLQKMVKLGLLDCVHNKVR-HLE-------AFG-TNVKLTDLKLDYNQIEE-IPEDF--CAFTDQVEGLGFSHN- 629 (876)
T ss_dssp CCCHHHHTTCTTCCEEECTTSCCC-BCC-------CCC-TTSEESEEECCSSCCSC-CCTTS--CEECTTCCEEECCSS-
T ss_pred cCChhhhhcCCCCCEEECCCCCcc-cch-------hhc-CCCcceEEECcCCcccc-chHHH--hhccccCCEEECcCC-
Confidence 345667888888775433 211 122 66778888888776651 11111 35566 788887766
Q ss_pred CCCHHHHHHHHhcC--CCccEEEecCCCCChHHHH---HHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeccc
Q 045871 329 EITDASVAAIASTY--SKLELLDLSGSSISDSGIG---MICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCG 403 (541)
Q Consensus 329 ~i~d~~l~~l~~~~--~~L~~L~L~~~~i~~~~l~---~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~ 403 (541)
.++ .+....... ++|+.|+|++|.++..... .+......+|+.|++++| .++. -...+...+++|+.|++.
T Consensus 630 ~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~-lp~~~~~~l~~L~~L~Ls 705 (876)
T 4ecn_A 630 KLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQK-FPTELFATGSPISTIILS 705 (876)
T ss_dssp CCC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCS-CCHHHHHTTCCCSEEECC
T ss_pred CCC--cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCc-cCHHHHccCCCCCEEECC
Confidence 333 111111112 2377777777766542100 011011136777777774 3441 112333456777777653
Q ss_pred CCcCCCCCCCCCCcc-------cccceeecccchhhcHHHHHHHH--hCCCccEEEcCCCc--cHHHHHhcCCCCCeeec
Q 045871 404 MSICDPTSEDSNSDE-------TCDFELQKAFNNKLHLMYQKLII--KHCCLKKLSLWGCS--GLDALCLNCPELNDLNL 472 (541)
Q Consensus 404 ~~~~~~~~~~~~~~~-------~~l~~L~l~~c~~l~~~~~~~l~--~~~~L~~L~L~~~~--~l~~l~~~~~~L~~L~L 472 (541)
............... ..+++|+|++|. ++ .+...+. .+++|+.|+|+++. ++..-...+++|+.|+|
T Consensus 706 ~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~L 783 (876)
T 4ecn_A 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGI 783 (876)
T ss_dssp SCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEEC
T ss_pred CCcCCccChHHhccccccccccCCccEEECCCCC-Cc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEEC
Confidence 322111111111100 145666666653 33 1222233 55666666666653 33222335666666666
Q ss_pred cCCCC------CCH-hHHHhcCCCCcEecccCCc
Q 045871 473 NSCRN------LRP-ETLLLHCPRLESVHASGCQ 499 (541)
Q Consensus 473 ~~c~~------~~d-~~l~~~~p~L~~L~l~~C~ 499 (541)
++|.. ... ...+..+++|+.|+|++|.
T Consensus 784 s~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 784 RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp CCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred CCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 55321 111 1223446666666666654
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.36 E-value=2.6e-13 Score=149.29 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=18.0
Q ss_pred HhCCCccEEEcCCCc--cH-HHHHhcCCCCCeeeccCCC
Q 045871 441 IKHCCLKKLSLWGCS--GL-DALCLNCPELNDLNLNSCR 476 (541)
Q Consensus 441 ~~~~~L~~L~L~~~~--~l-~~l~~~~~~L~~L~L~~c~ 476 (541)
..+++|++|+|.++. ++ ...+..+++|++|++++|.
T Consensus 326 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred ccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 345556666665553 11 1223345666666665553
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.36 E-value=6.3e-12 Score=133.72 Aligned_cols=123 Identities=13% Similarity=0.053 Sum_probs=62.9
Q ss_pred CccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCcccccceeecccchhhc-HHHHHHHHhCCCccE
Q 045871 370 TLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDETCDFELQKAFNNKLH-LMYQKLIIKHCCLKK 448 (541)
Q Consensus 370 ~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~~l~-~~~~~~l~~~~~L~~ 448 (541)
+|+.|+++++. +....+ ...++.|+.|++..................+++|++++|.-.+ +.....+..+++|++
T Consensus 303 ~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~ 378 (520)
T 2z7x_B 303 NIKNFTVSGTR-MVHMLC---PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378 (520)
T ss_dssp CCSEEEEESSC-CCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCE
T ss_pred ceeEEEcCCCc-cccccc---hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCE
Confidence 46666666543 221110 1357778877754322211111112223346888888776433 244556777888888
Q ss_pred EEcCCCc--c-HHH-HHhcCCCCCeeeccCCCCCCHhHHHhcC-CCCcEecccCC
Q 045871 449 LSLWGCS--G-LDA-LCLNCPELNDLNLNSCRNLRPETLLLHC-PRLESVHASGC 498 (541)
Q Consensus 449 L~L~~~~--~-l~~-l~~~~~~L~~L~L~~c~~~~d~~l~~~~-p~L~~L~l~~C 498 (541)
|+|+++. + +.. ....+++|++|++++|... . .+.... ++|+.|++++|
T Consensus 379 L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~-~-~~~~~l~~~L~~L~Ls~N 431 (520)
T 2z7x_B 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT-D-TIFRCLPPRIKVLDLHSN 431 (520)
T ss_dssp EECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC-G-GGGGSCCTTCCEEECCSS
T ss_pred EECCCCcCCcccccchhccCccCCEEECcCCCCC-c-chhhhhcccCCEEECCCC
Confidence 8888774 2 322 2334566666666666532 1 111111 45555555554
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.35 E-value=5e-14 Score=151.57 Aligned_cols=180 Identities=15% Similarity=0.066 Sum_probs=95.0
Q ss_pred cCCCCCEEEcCCCCCCCHHH-HHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhc
Q 045871 315 GLRGLRMLSLVLGSEITDAS-VAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQ 393 (541)
Q Consensus 315 ~~~~L~~L~L~~~~~i~d~~-l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~ 393 (541)
.+++|+.|+|+++ .++... .......+++|++|++++|.++..... +.. + ++|+.|++++|. ++..........
T Consensus 345 ~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~-l-~~L~~L~l~~n~-l~~~~~~~~~~~ 419 (570)
T 2z63_A 345 DLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLG-L-EQLEHLDFQHSN-LKQMSEFSVFLS 419 (570)
T ss_dssp BCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EET-C-TTCCEEECTTSE-EESCTTSCTTTT
T ss_pred cCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCCcccccccc-ccc-c-CCCCEEEccCCc-cccccchhhhhc
Confidence 4555666666554 222111 001122356666666666544432111 222 2 466666666642 221111112235
Q ss_pred CCCcceecccCCcCCCCCCCCCCcccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cH-HHHHhcCCCCCee
Q 045871 394 LPLLELMDCGMSICDPTSEDSNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GL-DALCLNCPELNDL 470 (541)
Q Consensus 394 ~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l-~~l~~~~~~L~~L 470 (541)
+++|+.|++..................+++|+|++|.-..+.....+..+++|+.|+|++|. ++ ......+++|++|
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 67777776432211111111112233468888888764322333446677889999998874 22 2334568899999
Q ss_pred eccCCCCCCH-hHHHhcCCCCcEecccCCc
Q 045871 471 NLNSCRNLRP-ETLLLHCPRLESVHASGCQ 499 (541)
Q Consensus 471 ~L~~c~~~~d-~~l~~~~p~L~~L~l~~C~ 499 (541)
+|++|..... ...+..+++|+.|++++++
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 9998864322 3345678999999999865
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.35 E-value=9.2e-13 Score=144.94 Aligned_cols=79 Identities=13% Similarity=-0.014 Sum_probs=49.5
Q ss_pred ccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--c------HH----HHHhcCCCCCeeeccCCCCCCH-hHHHhc
Q 045871 420 CDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--G------LD----ALCLNCPELNDLNLNSCRNLRP-ETLLLH 486 (541)
Q Consensus 420 ~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~------l~----~l~~~~~~L~~L~L~~c~~~~d-~~l~~~ 486 (541)
.+++|+++++.- .+.....+..+++|+.|++.++. + +. ..+..+++|++|++++|..... ...+..
T Consensus 273 ~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 351 (680)
T 1ziw_A 273 QLEYFFLEYNNI-QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351 (680)
T ss_dssp TCCEEECCSCCB-SEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTT
T ss_pred cccEeeCCCCcc-CccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhcc
Confidence 357777777643 22333345667778888777542 0 00 0234578888888888764322 334567
Q ss_pred CCCCcEecccCCc
Q 045871 487 CPRLESVHASGCQ 499 (541)
Q Consensus 487 ~p~L~~L~l~~C~ 499 (541)
+++|+.|++++|.
T Consensus 352 l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 352 LINLKYLSLSNSF 364 (680)
T ss_dssp CTTCCEEECTTCB
T ss_pred ccCCcEEECCCCc
Confidence 8999999998874
No 38
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=1.9e-11 Score=124.09 Aligned_cols=179 Identities=17% Similarity=0.206 Sum_probs=120.3
Q ss_pred CCccEEEecCCCCCChhhHHHHhhc----CCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceE
Q 045871 190 SALVRLSLTMESDVDATMLACIAFS----CPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREI 265 (541)
Q Consensus 190 ~~L~~L~L~~~~~~~~~~L~~l~~~----~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L 265 (541)
..|++|+|+++ .+++.....++.. +++|++|+|++| .+++.++..++.. +++|++|
T Consensus 72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-----~l~~~~~~~l~~~--------------L~~L~~L 131 (372)
T 3un9_A 72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASC-----QLDPAGLRTLLPV--------------FLRARKL 131 (372)
T ss_dssp TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTC-----CCCHHHHHHTHHH--------------HHTEEEE
T ss_pred hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCC-----CCCHHHHHHHHHH--------------HHhccHh
Confidence 45778888885 4665544444332 368888888865 4777777665442 2456777
Q ss_pred EecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHH--hcCCCCCEEEcCCCCCCCHHHHHHHH---h
Q 045871 266 SLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTA--AGLRGLRMLSLVLGSEITDASVAAIA---S 340 (541)
Q Consensus 266 ~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~--~~~~~L~~L~L~~~~~i~d~~l~~l~---~ 340 (541)
+|++| .+++. +...+...+...+++|++|++++|.+++.+...+.. ..+++|++|+|+++ .|++.++..+. .
T Consensus 132 ~Ls~n-~l~~~-~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~ 208 (372)
T 3un9_A 132 GLQLN-SLGPE-ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLD 208 (372)
T ss_dssp ECCSS-CCCHH-HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGG
T ss_pred hcCCC-CCCHH-HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHh
Confidence 77765 33332 344455555546778888888888887776555432 46778888888876 58887766554 3
Q ss_pred cCCCccEEEecCCCCChHHHHHHHhhC--CCCccEEeccCCCCCCHHHHHHHHh
Q 045871 341 TYSKLELLDLSGSSISDSGIGMICNVF--PNTLSRLLLALCPNITSSGIQFATA 392 (541)
Q Consensus 341 ~~~~L~~L~L~~~~i~~~~l~~l~~~~--~~~L~~L~l~~c~~l~~~~l~~l~~ 392 (541)
.+++|++|+|++|.|++.|...++... .++|++|+|++| .+++.++..+..
T Consensus 209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~ 261 (372)
T 3un9_A 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN-ELSSEGRQVLRD 261 (372)
T ss_dssp GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHH
T ss_pred cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHH
Confidence 466888888888888888877765532 147888888885 688888877764
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.34 E-value=5.7e-14 Score=152.43 Aligned_cols=261 Identities=16% Similarity=0.086 Sum_probs=161.8
Q ss_pred hcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC--------ccCCCCcceEEecccCCCCCchhHHHHHH
Q 045871 213 FSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG--------IFNCPNMREISLEFSRQENDSTDLTTMAD 284 (541)
Q Consensus 213 ~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~--------~~~~~~L~~L~L~~~~~~~~~~~l~~l~~ 284 (541)
..+++|+.|+++++. ...+. .+..+++|+.|.+.+ + .+++|++|++++|......
T Consensus 282 ~~l~~L~~L~l~~~~--~~~l~------~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~-------- 344 (606)
T 3vq2_A 282 HCLANVSAMSLAGVS--IKYLE------DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF-------- 344 (606)
T ss_dssp GGGTTCSEEEEESCC--CCCCC------CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC--------
T ss_pred ccCCCCCEEEecCcc--chhhh------hccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccch--------
Confidence 345777777777654 12222 234456677777665 2 5678888888876443322
Q ss_pred HHhcCCCCCCeEEecCcccchHH--HHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHH-H
Q 045871 285 GLGRNCPRLQNIHIASIRLSHSV--VLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGI-G 361 (541)
Q Consensus 285 ~l~~~~~~L~~L~l~~~~i~~~~--~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l-~ 361 (541)
.+. .+++|+.|++++|.+.... ...+ ..+++|+.|+|+++. ++... .....+++|++|++++|.++.... .
T Consensus 345 ~~~-~l~~L~~L~ls~n~l~~~~~~~~~~--~~~~~L~~L~L~~n~-l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~ 418 (606)
T 3vq2_A 345 KKV-ALPSLSYLDLSRNALSFSGCCSYSD--LGTNSLRHLDLSFNG-AIIMS--ANFMGLEELQHLDFQHSTLKRVTEFS 418 (606)
T ss_dssp CCC-CCTTCCEEECCSSCEEEEEECCHHH--HCCSCCCEEECCSCS-EEEEC--CCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred hhc-cCCCCCEEECcCCccCCCcchhhhh--ccCCcccEeECCCCc-cccch--hhccCCCCCCeeECCCCccCCccChh
Confidence 122 6888999999988776432 1222 478899999998773 32211 223347889999999986665433 2
Q ss_pred HHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCC-CCCCCCCcccccceeecccchhhcHHHHHHH
Q 045871 362 MICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDP-TSEDSNSDETCDFELQKAFNNKLHLMYQKLI 440 (541)
Q Consensus 362 ~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~-~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l 440 (541)
.+... ++|+.|++++|. ++... ......+++|+.|++....... ...........+++|+|++|. +.+.....+
T Consensus 419 ~~~~l--~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 493 (606)
T 3vq2_A 419 AFLSL--EKLLYLDISYTN-TKIDF-DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVF 493 (606)
T ss_dssp TTTTC--TTCCEEECTTSC-CEECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT
T ss_pred hhhcc--ccCCEEECcCCC-CCccc-hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc-CCccChhhh
Confidence 33333 589999999864 43211 1122457888888853321111 011112223457899999985 333444456
Q ss_pred HhCCCccEEEcCCCc--cH-HHHHhcCCCCCeeeccCCCCCCHhHHHhcCC-CCcEecccCCccc
Q 045871 441 IKHCCLKKLSLWGCS--GL-DALCLNCPELNDLNLNSCRNLRPETLLLHCP-RLESVHASGCQEL 501 (541)
Q Consensus 441 ~~~~~L~~L~L~~~~--~l-~~l~~~~~~L~~L~L~~c~~~~d~~l~~~~p-~L~~L~l~~C~~i 501 (541)
..+++|++|+|+++. ++ ......+++|++|+|++|...+-...+..++ +|+.|++++++-.
T Consensus 494 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcc
Confidence 788999999999985 32 3445678999999999997432222255666 5999999987644
No 40
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.31 E-value=9.3e-14 Score=138.22 Aligned_cols=174 Identities=16% Similarity=0.105 Sum_probs=85.5
Q ss_pred CCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCC
Q 045871 290 CPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPN 369 (541)
Q Consensus 290 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~ 369 (541)
.++|++|++++|.+..... ..+++|+.|+|+++ .+++.....+ ..+++|++|+|++|.+++.....+...+ +
T Consensus 98 ~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~l-~ 169 (317)
T 3o53_A 98 GPSIETLHAANNNISRVSC-----SRGQGKKNIYLANN-KITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASS-D 169 (317)
T ss_dssp CTTCCEEECCSSCCSEEEE-----CCCSSCEEEECCSS-CCCSGGGBCT-GGGSSEEEEECTTSCCCEEEGGGGGGGT-T
T ss_pred CCCcCEEECCCCccCCcCc-----cccCCCCEEECCCC-CCCCccchhh-hccCCCCEEECCCCCCCcccHHHHhhcc-C
Confidence 3556666666655443221 23455666666554 2332111111 2245566666666555554333333222 3
Q ss_pred CccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCcccccceeecccchhhcHHHHHHHHhCCCccEE
Q 045871 370 TLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKL 449 (541)
Q Consensus 370 ~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L 449 (541)
+|+.|++++| .++... .. ..+++ +++|+|++|.-.. ... .+..+++|+.|
T Consensus 170 ~L~~L~L~~N-~l~~~~--~~-~~l~~------------------------L~~L~Ls~N~l~~-l~~-~~~~l~~L~~L 219 (317)
T 3o53_A 170 TLEHLNLQYN-FIYDVK--GQ-VVFAK------------------------LKTLDLSSNKLAF-MGP-EFQSAAGVTWI 219 (317)
T ss_dssp TCCEEECTTS-CCCEEE--CC-CCCTT------------------------CCEEECCSSCCCE-ECG-GGGGGTTCSEE
T ss_pred cCCEEECCCC-cCcccc--cc-ccccc------------------------CCEEECCCCcCCc-chh-hhcccCcccEE
Confidence 5666666553 232110 00 01223 3455555543211 111 14566778888
Q ss_pred EcCCCc--cHHHHHhcCCCCCeeeccCCCCCCH--hHHHhcCCCCcEecccCCccc
Q 045871 450 SLWGCS--GLDALCLNCPELNDLNLNSCRNLRP--ETLLLHCPRLESVHASGCQEL 501 (541)
Q Consensus 450 ~L~~~~--~l~~l~~~~~~L~~L~L~~c~~~~d--~~l~~~~p~L~~L~l~~C~~i 501 (541)
+|+++. .+......+++|+.|+|++|....+ ..+...+++|+.|++.+|..+
T Consensus 220 ~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp ECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhc
Confidence 887773 3333334567788888887775423 445566777777777655433
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.31 E-value=4.8e-12 Score=136.07 Aligned_cols=155 Identities=14% Similarity=0.090 Sum_probs=102.8
Q ss_pred hcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHH-HHHHHHhcCCCcceecccCCcCCC-CCCCCCCc
Q 045871 340 STYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSS-GIQFATAQLPLLELMDCGMSICDP-TSEDSNSD 417 (541)
Q Consensus 340 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~-~l~~l~~~~~~L~~l~~~~~~~~~-~~~~~~~~ 417 (541)
..+++|++|++++|.+++.....+... ++|+.|+++++ .++.. .+......+++|+.|++....... ........
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 426 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTL--KRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSC--SSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC
T ss_pred cCCCCceEEECCCCccccchhhhhccc--CCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC
Confidence 457899999999998887544444443 68999999995 56532 233334578999999864332221 11111222
Q ss_pred ccccceeecccchhhcHHHHHHHHhC-CCccEEEcCCCc--cHHHHHhcCCCCCeeeccCCCCCCH-hHHHhcCCCCcEe
Q 045871 418 ETCDFELQKAFNNKLHLMYQKLIIKH-CCLKKLSLWGCS--GLDALCLNCPELNDLNLNSCRNLRP-ETLLLHCPRLESV 493 (541)
Q Consensus 418 ~~~l~~L~l~~c~~l~~~~~~~l~~~-~~L~~L~L~~~~--~l~~l~~~~~~L~~L~L~~c~~~~d-~~l~~~~p~L~~L 493 (541)
...+++|++++|.- ++.. ...+ ++|+.|+|+++. .+..-...+++|++|+|++|...+- ...+..+++|+.|
T Consensus 427 l~~L~~L~l~~n~l-~~~~---~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 427 AESILVLNLSSNML-TGSV---FRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp CTTCCEEECCSSCC-CGGG---GSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCE
T ss_pred cccCCEEECCCCCC-Ccch---hhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEE
Confidence 34579999999863 3221 2233 699999999984 3333233789999999999874422 2235689999999
Q ss_pred cccCCccc
Q 045871 494 HASGCQEL 501 (541)
Q Consensus 494 ~l~~C~~i 501 (541)
++++++-.
T Consensus 503 ~l~~N~~~ 510 (562)
T 3a79_B 503 WLHDNPWD 510 (562)
T ss_dssp ECCSCCBC
T ss_pred EecCCCcC
Confidence 99998744
No 42
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.30 E-value=3.7e-13 Score=146.06 Aligned_cols=241 Identities=15% Similarity=0.049 Sum_probs=141.4
Q ss_pred HhhCCCCceeeecC--------ccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHH
Q 045871 242 VADKRCLASLKMEG--------IFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTA 313 (541)
Q Consensus 242 ~~~~~~L~~L~l~~--------~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~ 313 (541)
+..+++|+.|.+.+ +..+++|++|++++|.. ...+ .+ .+++|++|++++|...... .+
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-------~~--~l~~L~~L~l~~n~~~~~~--~~-- 346 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-------TL--DLPFLKSLTLTMNKGSISF--KK-- 346 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-------CC--CCSSCCEEEEESCSSCEEC--CC--
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccc-------cC--CCCccceeeccCCcCccch--hh--
Confidence 34455666666554 34456777777777554 2221 12 5677777777777433222 11
Q ss_pred hcCCCCCEEEcCCCCCCCHHH-HHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHh
Q 045871 314 AGLRGLRMLSLVLGSEITDAS-VAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATA 392 (541)
Q Consensus 314 ~~~~~L~~L~L~~~~~i~d~~-l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~ 392 (541)
..+++|+.|+|+++ .++... +......+++|++|++++|.++... ..+... ++|+.|++++|. +..........
T Consensus 347 ~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l--~~L~~L~l~~n~-l~~~~~~~~~~ 421 (606)
T 3vq2_A 347 VALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGL--EELQHLDFQHST-LKRVTEFSAFL 421 (606)
T ss_dssp CCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTC--TTCCEEECTTSE-EESTTTTTTTT
T ss_pred ccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCccccch-hhccCC--CCCCeeECCCCc-cCCccChhhhh
Confidence 36778888888776 333211 0112334788888888887655422 222222 578888888853 32211112234
Q ss_pred cCCCcceecccCCcCCCCCCCCCCcccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cH-HHHHhcCCCCCe
Q 045871 393 QLPLLELMDCGMSICDPTSEDSNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GL-DALCLNCPELND 469 (541)
Q Consensus 393 ~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l-~~l~~~~~~L~~ 469 (541)
.+++|+.|++..................+++|++++|.-.+......+..+++|++|+|++|. ++ ......+++|++
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCE
Confidence 578888887533221111111122233478899988754332234456678899999999884 22 233457899999
Q ss_pred eeccCCCCCCH-hHHHhcCCCCcEecccCCcccc
Q 045871 470 LNLNSCRNLRP-ETLLLHCPRLESVHASGCQELL 502 (541)
Q Consensus 470 L~L~~c~~~~d-~~l~~~~p~L~~L~l~~C~~it 502 (541)
|+|++|..... ...+..+++|+.|+|++|. ++
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~ 534 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IE 534 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CC
T ss_pred EECCCCcCCCcCHHHccCCCcCCEEECCCCc-Cc
Confidence 99999874433 3445678999999999986 54
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.30 E-value=1.1e-12 Score=137.06 Aligned_cols=267 Identities=16% Similarity=0.143 Sum_probs=136.9
Q ss_pred hhCCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC-------ccCC
Q 045871 187 QKCSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG-------IFNC 259 (541)
Q Consensus 187 ~~~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~-------~~~~ 259 (541)
..+++|++|+++++. ++.-. ...+++|++|+++++. ++... +..+++|+.|.+++ +..+
T Consensus 61 ~~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~-----l~~~~----~~~l~~L~~L~L~~N~l~~l~~~~l 126 (457)
T 3bz5_A 61 EKLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNK-----LTNLD----VTPLTKLTYLNCDTNKLTKLDVSQN 126 (457)
T ss_dssp GGCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSC-----CSCCC----CTTCTTCCEEECCSSCCSCCCCTTC
T ss_pred cccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCC-----Cceee----cCCCCcCCEEECCCCcCCeecCCCC
Confidence 456677777777642 32211 2345677777777643 33221 34456666666655 3455
Q ss_pred CCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHH
Q 045871 260 PNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIA 339 (541)
Q Consensus 260 ~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~ 339 (541)
++|++|+++++....- . +. .+++|++|++++|...... .+ ..+++|+.|+++++ .+++.. .
T Consensus 127 ~~L~~L~l~~N~l~~l-~--------l~-~l~~L~~L~l~~n~~~~~~--~~--~~l~~L~~L~ls~n-~l~~l~----l 187 (457)
T 3bz5_A 127 PLLTYLNCARNTLTEI-D--------VS-HNTQLTELDCHLNKKITKL--DV--TPQTQLTTLDCSFN-KITELD----V 187 (457)
T ss_dssp TTCCEEECTTSCCSCC-C--------CT-TCTTCCEEECTTCSCCCCC--CC--TTCTTCCEEECCSS-CCCCCC----C
T ss_pred CcCCEEECCCCcccee-c--------cc-cCCcCCEEECCCCCccccc--cc--ccCCcCCEEECCCC-ccceec----c
Confidence 6666666665432221 0 22 4556666666666321111 11 34566666666655 333211 2
Q ss_pred hcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCcc-
Q 045871 340 STYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDE- 418 (541)
Q Consensus 340 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~- 418 (541)
..+++|++|++++|.+++.. +... ++|+.|+++++ .++.. . ...++.|+.+++................
T Consensus 188 ~~l~~L~~L~l~~N~l~~~~---l~~l--~~L~~L~Ls~N-~l~~i--p--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~ 257 (457)
T 3bz5_A 188 SQNKLLNRLNCDTNNITKLD---LNQN--IQLTFLDCSSN-KLTEI--D--VTPLTQLTYFDCSVNPLTELDVSTLSKLT 257 (457)
T ss_dssp TTCTTCCEEECCSSCCSCCC---CTTC--TTCSEEECCSS-CCSCC--C--CTTCTTCSEEECCSSCCSCCCCTTCTTCC
T ss_pred ccCCCCCEEECcCCcCCeec---cccC--CCCCEEECcCC-ccccc--C--ccccCCCCEEEeeCCcCCCcCHHHCCCCC
Confidence 33566666666666555431 2222 46666666664 34331 1 2346666666643221111110000000
Q ss_pred ------cccceeecccchhhcHHHHHHHHhCCCccEEEcCCCccHHHH-----------HhcCCCCCeeeccCCCCCCHh
Q 045871 419 ------TCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCSGLDAL-----------CLNCPELNDLNLNSCRNLRPE 481 (541)
Q Consensus 419 ------~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~l-----------~~~~~~L~~L~L~~c~~~~d~ 481 (541)
..++.|+++.|..++... +..+++|+.|+|++|..+..+ ...+++|++|++++|.... .
T Consensus 258 ~L~l~~n~L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l 333 (457)
T 3bz5_A 258 TLHCIQTDLLEIDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-L 333 (457)
T ss_dssp EEECTTCCCSCCCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-C
T ss_pred EEeccCCCCCEEECCCCccCCccc---ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-c
Confidence 123566666665443211 345677888888777421111 2346777888887776332 2
Q ss_pred HHHhcCCCCcEecccCCcccc
Q 045871 482 TLLLHCPRLESVHASGCQELL 502 (541)
Q Consensus 482 ~l~~~~p~L~~L~l~~C~~it 502 (541)
. +..|++|+.|+++++. ++
T Consensus 334 ~-l~~l~~L~~L~l~~N~-l~ 352 (457)
T 3bz5_A 334 D-VSHNTKLKSLSCVNAH-IQ 352 (457)
T ss_dssp C-CTTCTTCSEEECCSSC-CC
T ss_pred c-cccCCcCcEEECCCCC-CC
Confidence 2 4678899999998865 44
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.29 E-value=2.1e-12 Score=130.30 Aligned_cols=205 Identities=16% Similarity=0.118 Sum_probs=110.7
Q ss_pred CCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHH-HHHHhhC
Q 045871 289 NCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGI-GMICNVF 367 (541)
Q Consensus 289 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l-~~l~~~~ 367 (541)
.+++|++|++++|.+.......+ ..+++|++|+|+++ .++.... .....+++|++|+|++|.++.... ..+...
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l- 148 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSF--SSLGSLEHLDLSYN-YLSNLSS-SWFKPLSSLTFLNLLGNPYKTLGETSLFSHL- 148 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSS-CCSSCCH-HHHTTCTTCSEEECTTCCCSSSCSSCSCTTC-
T ss_pred cCCCCCEEECCCCccCccCHhhc--CCCCCCCEEECCCC-cCCcCCH-hHhCCCccCCEEECCCCCCcccCchhhhccC-
Confidence 56667777777666554321112 35666777777665 3332111 112336677777777765553211 112222
Q ss_pred CCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCcccccceeecccchhhcHHHHHHHHhCCCcc
Q 045871 368 PNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLK 447 (541)
Q Consensus 368 ~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~ 447 (541)
++|++|++++|..++.... .....+++|+.+++..................+++|+++++. ++......+..+++|+
T Consensus 149 -~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~ 225 (353)
T 2z80_A 149 -TKLQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVE 225 (353)
T ss_dssp -TTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEE
T ss_pred -CCCcEEECCCCccccccCH-HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhhhccccc
Confidence 4677777766543332111 111345666666543221111111111122235677777665 3433344455577777
Q ss_pred EEEcCCCc----------------------------------cHHHHHhcCCCCCeeeccCCCCCCH-hHHHhcCCCCcE
Q 045871 448 KLSLWGCS----------------------------------GLDALCLNCPELNDLNLNSCRNLRP-ETLLLHCPRLES 492 (541)
Q Consensus 448 ~L~L~~~~----------------------------------~l~~l~~~~~~L~~L~L~~c~~~~d-~~l~~~~p~L~~ 492 (541)
.|+|+++. .+......+++|++|+|++|....- ..++..+++|+.
T Consensus 226 ~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 305 (353)
T 2z80_A 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305 (353)
T ss_dssp EEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCE
Confidence 77777663 1233456789999999999974322 344578999999
Q ss_pred ecccCCccc
Q 045871 493 VHASGCQEL 501 (541)
Q Consensus 493 L~l~~C~~i 501 (541)
|++++++-.
T Consensus 306 L~L~~N~~~ 314 (353)
T 2z80_A 306 IWLHTNPWD 314 (353)
T ss_dssp EECCSSCBC
T ss_pred EEeeCCCcc
Confidence 999998744
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.28 E-value=9e-12 Score=130.19 Aligned_cols=263 Identities=16% Similarity=0.138 Sum_probs=169.7
Q ss_pred hCCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC-------ccCCC
Q 045871 188 KCSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG-------IFNCP 260 (541)
Q Consensus 188 ~~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~-------~~~~~ 260 (541)
.+++|++|+++++ .+.+. .. ...+++|++|+++++. ++.-. +..+++|+.|.+++ +..++
T Consensus 40 ~l~~L~~L~Ls~n-~l~~~--~~-l~~l~~L~~L~Ls~n~-----l~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~l~ 106 (457)
T 3bz5_A 40 QLATLTSLDCHNS-SITDM--TG-IEKLTGLTKLICTSNN-----ITTLD----LSQNTNLTYLACDSNKLTNLDVTPLT 106 (457)
T ss_dssp HHTTCCEEECCSS-CCCCC--TT-GGGCTTCSEEECCSSC-----CSCCC----CTTCTTCSEEECCSSCCSCCCCTTCT
T ss_pred HcCCCCEEEccCC-CcccC--hh-hcccCCCCEEEccCCc-----CCeEc----cccCCCCCEEECcCCCCceeecCCCC
Confidence 3578999999985 34321 12 3567999999999864 44321 45678899998877 56788
Q ss_pred CcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHh
Q 045871 261 NMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIAS 340 (541)
Q Consensus 261 ~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~ 340 (541)
+|++|+++++.... .+ +. .+++|++|++++|.+.... + ..+++|+.|++.++..++... ..
T Consensus 107 ~L~~L~L~~N~l~~-l~--------~~-~l~~L~~L~l~~N~l~~l~---l--~~l~~L~~L~l~~n~~~~~~~----~~ 167 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-LD--------VS-QNPLLTYLNCARNTLTEID---V--SHNTQLTELDCHLNKKITKLD----VT 167 (457)
T ss_dssp TCCEEECCSSCCSC-CC--------CT-TCTTCCEEECTTSCCSCCC---C--TTCTTCCEEECTTCSCCCCCC----CT
T ss_pred cCCEEECCCCcCCe-ec--------CC-CCCcCCEEECCCCccceec---c--ccCCcCCEEECCCCCcccccc----cc
Confidence 99999998864332 21 23 7889999999999877632 2 578899999998885554431 23
Q ss_pred cCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCcccc
Q 045871 341 TYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDETC 420 (541)
Q Consensus 341 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~ 420 (541)
.+++|++|++++|.++.-. +... ++|+.|+++++ .++... ...+++|+.|++....... ........
T Consensus 168 ~l~~L~~L~ls~n~l~~l~---l~~l--~~L~~L~l~~N-~l~~~~----l~~l~~L~~L~Ls~N~l~~---ip~~~l~~ 234 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITELD---VSQN--KLLNRLNCDTN-NITKLD----LNQNIQLTFLDCSSNKLTE---IDVTPLTQ 234 (457)
T ss_dssp TCTTCCEEECCSSCCCCCC---CTTC--TTCCEEECCSS-CCSCCC----CTTCTTCSEEECCSSCCSC---CCCTTCTT
T ss_pred cCCcCCEEECCCCccceec---cccC--CCCCEEECcCC-cCCeec----cccCCCCCEEECcCCcccc---cCccccCC
Confidence 4889999999999887732 3333 68999999985 455431 2458889999864432222 12223344
Q ss_pred cceeecccchhhcHHHHHHHHhCCCccEEEcCCC----------ccHHHH-HhcCCCCCeeeccCCCCCCHh--------
Q 045871 421 DFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGC----------SGLDAL-CLNCPELNDLNLNSCRNLRPE-------- 481 (541)
Q Consensus 421 l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~----------~~l~~l-~~~~~~L~~L~L~~c~~~~d~-------- 481 (541)
++.|+++++.- ++.. +..+++|+.|+++++ ..+..+ ...|++|+.|+|++|..+..-
T Consensus 235 L~~L~l~~N~l-~~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~ 310 (457)
T 3bz5_A 235 LTYFDCSVNPL-TELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT 310 (457)
T ss_dssp CSEEECCSSCC-SCCC---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCS
T ss_pred CCEEEeeCCcC-CCcC---HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcce
Confidence 78899988753 3211 345666666655443 211111 235788999999988754320
Q ss_pred H-HHhcCCCCcEecccCCc
Q 045871 482 T-LLLHCPRLESVHASGCQ 499 (541)
Q Consensus 482 ~-l~~~~p~L~~L~l~~C~ 499 (541)
. -+..+++|+.|+++++.
T Consensus 311 ~L~l~~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 311 ELDLSQNPKLVYLYLNNTE 329 (457)
T ss_dssp CCCCTTCTTCCEEECTTCC
T ss_pred EechhhcccCCEEECCCCc
Confidence 0 02456677777777654
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.27 E-value=9.5e-13 Score=142.58 Aligned_cols=274 Identities=16% Similarity=0.115 Sum_probs=162.9
Q ss_pred CCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC----------ccC
Q 045871 189 CSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG----------IFN 258 (541)
Q Consensus 189 ~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~----------~~~ 258 (541)
..+++.|++.++ .++. .-..+...+++|+.|+|+++. +..+... .+..+++|+.|.+.+ +..
T Consensus 50 l~~l~~l~l~~~-~l~~-lp~~~~~~l~~L~~L~L~~n~--l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRK-LPAALLDSFRQVELLNLNDLQ--IEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GCCCSEEEESSC-EESE-ECTHHHHHCCCCSEEECTTSC--CCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCceEEEeeCC-CCCC-cCHHHHccCCCCcEEECCCCC--CCCCChH----HhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 457888988873 2221 112234567899999998764 2222221 234566777777765 356
Q ss_pred CCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHH
Q 045871 259 CPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAI 338 (541)
Q Consensus 259 ~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l 338 (541)
+++|++|+|++|....-. ..+...+++|++|++++|.+.......+ ..+++|+.|+|+++ .++...
T Consensus 122 l~~L~~L~L~~n~l~~l~-------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N-~l~~~~---- 187 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLP-------RGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLSSN-RLTHVD---- 187 (597)
T ss_dssp CTTCCEEECCSSCCCCCC-------TTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECTTS-CCSBCC----
T ss_pred CCCCCEEEeeCCCCCCCC-------HHHhccCCCCCEEEeeCCcCCCCChhhh--hcCCcCcEEECcCC-CCCCcC----
Confidence 677777777775433211 1122266777777777776654322222 35677777777765 333221
Q ss_pred HhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCcc
Q 045871 339 ASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDE 418 (541)
Q Consensus 339 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~ 418 (541)
...+++|++|++++|.++.. ..+.+|+.|+++++ .++... ....++|+.|++....... .......
T Consensus 188 ~~~l~~L~~L~l~~n~l~~l-------~~~~~L~~L~ls~n-~l~~~~----~~~~~~L~~L~L~~n~l~~--~~~l~~l 253 (597)
T 3oja_B 188 LSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHN-SINVVR----GPVNVELTILKLQHNNLTD--TAWLLNY 253 (597)
T ss_dssp GGGCTTCSEEECCSSCCSEE-------ECCTTCSEEECCSS-CCCEEE----CSCCSCCCEEECCSSCCCC--CGGGGGC
T ss_pred hhhhhhhhhhhcccCccccc-------cCCchhheeeccCC-cccccc----cccCCCCCEEECCCCCCCC--ChhhccC
Confidence 23367777777777766542 12257888888875 343211 0123567777743322111 1112223
Q ss_pred cccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cHHHHHhcCCCCCeeeccCCCCCCHhHHHhcCCCCcEeccc
Q 045871 419 TCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GLDALCLNCPELNDLNLNSCRNLRPETLLLHCPRLESVHAS 496 (541)
Q Consensus 419 ~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l~~l~~~~~~L~~L~L~~c~~~~d~~l~~~~p~L~~L~l~ 496 (541)
..++.|+|++|. +.+.....+..+++|+.|+|+++. ++......+++|+.|+|++|....-...+..+++|+.|+|+
T Consensus 254 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 254 PGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 332 (597)
T ss_dssp TTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECC
T ss_pred CCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECC
Confidence 347889998875 333334456778899999998884 33333355889999999998754333334678899999999
Q ss_pred CCc
Q 045871 497 GCQ 499 (541)
Q Consensus 497 ~C~ 499 (541)
+|.
T Consensus 333 ~N~ 335 (597)
T 3oja_B 333 HNS 335 (597)
T ss_dssp SSC
T ss_pred CCC
Confidence 987
No 47
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.27 E-value=1.4e-13 Score=155.07 Aligned_cols=125 Identities=15% Similarity=0.138 Sum_probs=60.9
Q ss_pred CCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC----------ccCC
Q 045871 190 SALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG----------IFNC 259 (541)
Q Consensus 190 ~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~----------~~~~ 259 (541)
+++++|+|+++ .+.... ......+++|++|+|++|.. ...+... .+..+++|+.|.+++ +..+
T Consensus 24 ~~l~~LdLs~N-~i~~i~-~~~~~~l~~L~~LdLs~n~~-~~~i~~~----~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 24 NTTERLLLSFN-YIRTVT-ASSFPFLEQLQLLELGSQYT-PLTIDKE----AFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp TTCCEEEEESC-CCCEEC-SSSCSSCCSCSEEEECTTCC-CCEECTT----TTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCcCEEECCCC-cCCccC-hhHCcccccCeEEeCCCCCC-ccccCHH----HhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 45667777763 232110 01123456777777766521 1112121 124455666666655 4456
Q ss_pred CCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCC
Q 045871 260 PNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLG 327 (541)
Q Consensus 260 ~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~ 327 (541)
++|++|+|++|........ ......+++|++|++++|.+........+ ..+++|++|+|+++
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~-----~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~-~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLK-----DGYFRNLKALTRLDLSKNQIRSLYLHPSF-GKLNSLKSIDFSSN 158 (844)
T ss_dssp SSCCCEECTTCCCSSCCST-----TCCCSSCSSCCEEEEESCCCCCCCCCGGG-GTCSSCCEEEEESS
T ss_pred cccCEeeCcCCCCCccccc-----CccccccCCCCEEECCCCcccccccchhH-hhCCCCCEEECCCC
Confidence 6677777766543321100 00112566677777777665443211111 35666777777654
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.25 E-value=3.7e-13 Score=140.23 Aligned_cols=223 Identities=18% Similarity=0.095 Sum_probs=140.6
Q ss_pred CCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHH
Q 045871 260 PNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIA 339 (541)
Q Consensus 260 ~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~ 339 (541)
++++.|+|+++....-. ...+. .+++|++|+|++|.+.......+ ..+++|++|+|+++ .++..... ..
T Consensus 64 ~~l~~L~L~~n~i~~~~------~~~~~-~l~~L~~L~Ls~n~i~~i~~~~~--~~l~~L~~L~L~~n-~l~~~~~~-~~ 132 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIK------VNSFK-HLRHLEILQLSRNHIRTIEIGAF--NGLANLNTLELFDN-RLTTIPNG-AF 132 (440)
T ss_dssp TTCSEEECCSCCCCEEC------TTTTS-SCSSCCEEECCSSCCCEECGGGG--TTCSSCCEEECCSS-CCSSCCTT-TS
T ss_pred CCCcEEEccCCcCCeeC------HHHhh-CCCCCCEEECCCCcCCccChhhc--cCCccCCEEECCCC-cCCeeCHh-Hh
Confidence 56788888775432211 01223 77888888888887654332222 46788888888876 44421111 22
Q ss_pred hcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCccc
Q 045871 340 STYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDET 419 (541)
Q Consensus 340 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~ 419 (541)
..+++|++|+|++|.|+......+... ++|+.|++++|..++.... .....+++|+.|++......... ......
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l--~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~ 207 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSYAFNRI--PSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCNLREIP--NLTPLI 207 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTTTTTTC--TTCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSCCSSCC--CCTTCS
T ss_pred hccccCceeeCCCCcccccCHHHhhhC--cccCEeCCCCCCCcceeCc-chhhcccccCeecCCCCcCcccc--ccCCCc
Confidence 347888888888887775433334433 5888888888766643211 12245788888875433222111 122233
Q ss_pred ccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cH-HHHHhcCCCCCeeeccCCCCCCH-hHHHhcCCCCcEecc
Q 045871 420 CDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GL-DALCLNCPELNDLNLNSCRNLRP-ETLLLHCPRLESVHA 495 (541)
Q Consensus 420 ~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l-~~l~~~~~~L~~L~L~~c~~~~d-~~l~~~~p~L~~L~l 495 (541)
.+++|+|+++. +++.....+..+++|++|+|.++. .+ ...+..+++|++|+|++|..... ...+..+++|+.|+|
T Consensus 208 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 208 KLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp SCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEEC
T ss_pred ccCEEECCCCc-cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEc
Confidence 47899999874 443434457788999999999884 22 22345689999999999874332 445677899999999
Q ss_pred cCCc
Q 045871 496 SGCQ 499 (541)
Q Consensus 496 ~~C~ 499 (541)
++++
T Consensus 287 ~~Np 290 (440)
T 3zyj_A 287 HHNP 290 (440)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 9876
No 49
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.24 E-value=2.7e-13 Score=147.89 Aligned_cols=289 Identities=12% Similarity=0.095 Sum_probs=178.9
Q ss_pred HhhCCCccEEEecCCCCCCh-hhHHHHh-----hcCCCccEEEeeecCCcccccCHHHHHH--HHhhCCCCceeeecC--
Q 045871 186 LQKCSALVRLSLTMESDVDA-TMLACIA-----FSCPNLESMEIYTSGSAVNRITGDELGR--FVADKRCLASLKMEG-- 255 (541)
Q Consensus 186 ~~~~~~L~~L~L~~~~~~~~-~~L~~l~-----~~~~~L~~L~L~~c~~~~~~it~~~l~~--~~~~~~~L~~L~l~~-- 255 (541)
+..+++|++|+++++..++. ..-..+. ..+++|++|+++++. ++ .+.. .+..+++|+.|.+++
T Consensus 269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-----l~--~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-----LK--TFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-----CS--SCCCHHHHTTCTTCCEEECCSCC
T ss_pred HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-----CC--ccCchhhhccCCCCCEEeCcCCc
Confidence 44567899999999654654 2222222 235899999999864 44 3333 566788999999876
Q ss_pred -------ccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCC-CCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCC
Q 045871 256 -------IFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPR-LQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLG 327 (541)
Q Consensus 256 -------~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~-L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~ 327 (541)
+..+++|++|++++|... ..+ ..+. .+++ |++|++++|.+..-. ..+....+++|+.|+|+++
T Consensus 342 l~g~ip~~~~l~~L~~L~L~~N~l~-~lp------~~l~-~l~~~L~~L~Ls~N~l~~lp-~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 342 LEGKLPAFGSEIKLASLNLAYNQIT-EIP------ANFC-GFTEQVENLSFAHNKLKYIP-NIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp CEEECCCCEEEEEESEEECCSSEEE-ECC------TTSE-EECTTCCEEECCSSCCSSCC-SCCCTTCSSCEEEEECCSS
T ss_pred CccchhhhCCCCCCCEEECCCCccc-ccc------Hhhh-hhcccCcEEEccCCcCcccc-hhhhhcccCccCEEECcCC
Confidence 234578999999986433 111 1233 6778 999999999876211 1111012448999999987
Q ss_pred CCCCHHHHHHHH------hcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHh-------cC
Q 045871 328 SEITDASVAAIA------STYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATA-------QL 394 (541)
Q Consensus 328 ~~i~d~~l~~l~------~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~-------~~ 394 (541)
.++......+. ..+++|++|+|++|.++.-.. .+...+ ++|+.|+++++ .++... ..+.. ++
T Consensus 413 -~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~-~~~~~l-~~L~~L~Ls~N-~l~~i~-~~~~~~~~~~~~~l 487 (636)
T 4eco_A 413 -EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK-ELFSTG-SPLSSINLMGN-MLTEIP-KNSLKDENENFKNT 487 (636)
T ss_dssp -CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT-HHHHTT-CCCSEEECCSS-CCSBCC-SSSSEETTEECTTG
T ss_pred -cCCCcchhhhcccccccccCCCCCEEECcCCccCcCCH-HHHccC-CCCCEEECCCC-CCCCcC-HHHhcccccccccc
Confidence 44432211121 036689999999998874322 233333 58999999995 454211 01111 12
Q ss_pred CCcceecccCCcCCCCCCCCC-CcccccceeecccchhhcHHHHHHHHhCCCccEEEcCCC------c---cHHHHHhcC
Q 045871 395 PLLELMDCGMSICDPTSEDSN-SDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGC------S---GLDALCLNC 464 (541)
Q Consensus 395 ~~L~~l~~~~~~~~~~~~~~~-~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~------~---~l~~l~~~~ 464 (541)
++|+.|++............. .....+++|+|+++.- ++ +...+..+++|+.|+|+++ . .+......+
T Consensus 488 ~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l-~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l 565 (636)
T 4eco_A 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565 (636)
T ss_dssp GGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCC-SS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC
T ss_pred CCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCC-CC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcC
Confidence 288888854332221111110 1333479999999753 33 3445678899999999653 2 223344569
Q ss_pred CCCCeeeccCCCCCCHhHHHhcCCCCcEecccCCc
Q 045871 465 PELNDLNLNSCRNLRPETLLLHCPRLESVHASGCQ 499 (541)
Q Consensus 465 ~~L~~L~L~~c~~~~d~~l~~~~p~L~~L~l~~C~ 499 (541)
++|++|+|++|.. +.-. ...+++|+.|+|++|+
T Consensus 566 ~~L~~L~Ls~N~l-~~ip-~~~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 566 PSLTQLQIGSNDI-RKVN-EKITPNISVLDIKDNP 598 (636)
T ss_dssp SSCCEEECCSSCC-CBCC-SCCCTTCCEEECCSCT
T ss_pred CCCCEEECCCCcC-CccC-HhHhCcCCEEECcCCC
Confidence 9999999999985 3311 0123899999999986
No 50
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.24 E-value=3.5e-13 Score=138.02 Aligned_cols=255 Identities=15% Similarity=0.125 Sum_probs=143.7
Q ss_pred CCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC----------ccCCCCcceEEecccCCCCCchhHHHHHH
Q 045871 215 CPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG----------IFNCPNMREISLEFSRQENDSTDLTTMAD 284 (541)
Q Consensus 215 ~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~----------~~~~~~L~~L~L~~~~~~~~~~~l~~l~~ 284 (541)
.++|+.|+++++. +..+.. .++..+++|+.|.+.+ +..+++|++|+++++....-.. .
T Consensus 44 l~~l~~l~l~~~~--l~~l~~----~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~ 111 (390)
T 3o6n_A 44 LNNQKIVTFKNST--MRKLPA----ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP------H 111 (390)
T ss_dssp GCCCSEEEEESCE--ESEECT----HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT------T
T ss_pred cCCceEEEecCCc--hhhCCh----hHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH------H
Confidence 4899999999864 333443 2346678899999987 4678899999999865433221 1
Q ss_pred HHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHH
Q 045871 285 GLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMIC 364 (541)
Q Consensus 285 ~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~ 364 (541)
.+. .+++|++|++++|.+..-....+ ..+++|++|+|+++ .++..... ....+++|++|++++|.++...+.
T Consensus 112 ~~~-~l~~L~~L~L~~n~l~~l~~~~~--~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~--- 183 (390)
T 3o6n_A 112 VFQ-NVPLLTVLVLERNDLSSLPRGIF--HNTPKLTTLSMSNN-NLERIEDD-TFQATTSLQNLQLSSNRLTHVDLS--- 183 (390)
T ss_dssp TTT-TCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSS-CCCBCCTT-TTSSCTTCCEEECCSSCCSBCCGG---
T ss_pred Hhc-CCCCCCEEECCCCccCcCCHHHh--cCCCCCcEEECCCC-ccCccChh-hccCCCCCCEEECCCCcCCccccc---
Confidence 123 78899999999998764321111 46889999999886 34322111 134588999999999988765322
Q ss_pred hhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCC------------------CCC-CCCCcccccceee
Q 045871 365 NVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDP------------------TSE-DSNSDETCDFELQ 425 (541)
Q Consensus 365 ~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~------------------~~~-~~~~~~~~l~~L~ 425 (541)
. + ++|+.|+++++ .++.. ...+.|+.+++....... ... ........+++|+
T Consensus 184 ~-l-~~L~~L~l~~n-~l~~~------~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~ 254 (390)
T 3o6n_A 184 L-I-PSLFHANVSYN-LLSTL------AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVD 254 (390)
T ss_dssp G-C-TTCSEEECCSS-CCSEE------ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred c-c-cccceeecccc-ccccc------CCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEE
Confidence 2 2 46777777663 33221 112334444321110000 000 0011122346666
Q ss_pred cccchhhcHHHHHHHHhCCCccEEEcCCCc--cHHHHHhcCCCCCeeeccCCCCCCHhHHHhcCCCCcEecccCCc
Q 045871 426 KAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GLDALCLNCPELNDLNLNSCRNLRPETLLLHCPRLESVHASGCQ 499 (541)
Q Consensus 426 l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l~~l~~~~~~L~~L~L~~c~~~~d~~l~~~~p~L~~L~l~~C~ 499 (541)
|+++. +.+.....+..+++|++|+|+++. ++......+++|++|+|++|....-......+++|+.|++++|.
T Consensus 255 Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 255 LSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp CCSSC-CCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred CCCCc-CCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc
Confidence 66653 222222334555666666666653 22222234666777777666532212223456677777777665
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.23 E-value=4.3e-12 Score=128.04 Aligned_cols=256 Identities=13% Similarity=0.076 Sum_probs=148.4
Q ss_pred CCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEecc
Q 045871 190 SALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISLEF 269 (541)
Q Consensus 190 ~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~ 269 (541)
++|++|+++++ .+++.. ......+++|++|+|+++. ++. +.-..+..+++|++|++++
T Consensus 52 ~~L~~L~l~~n-~i~~~~-~~~~~~l~~L~~L~L~~n~-----l~~---------------~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 52 EAVKSLDLSNN-RITYIS-NSDLQRCVNLQALVLTSNG-----INT---------------IEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp TTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECTTSC-----CCE---------------ECTTTTTTCTTCCEEECCS
T ss_pred ccCcEEECCCC-cCcccC-HHHhccCCCCCEEECCCCc-----cCc---------------cCHhhcCCCCCCCEEECCC
Confidence 36788888773 333211 1112456788888887643 222 1111134668888888887
Q ss_pred cCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEE
Q 045871 270 SRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLD 349 (541)
Q Consensus 270 ~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~ 349 (541)
+....-. ...+. .+++|++|++++|.+..-.....+ ..+++|++|++.++..++...... ...+++|++|+
T Consensus 110 n~l~~~~------~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~ 180 (353)
T 2z80_A 110 NYLSNLS------SSWFK-PLSSLTFLNLLGNPYKTLGETSLF-SHLTKLQILRVGNMDTFTKIQRKD-FAGLTFLEELE 180 (353)
T ss_dssp SCCSSCC------HHHHT-TCTTCSEEECTTCCCSSSCSSCSC-TTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEE
T ss_pred CcCCcCC------HhHhC-CCccCCEEECCCCCCcccCchhhh-ccCCCCcEEECCCCccccccCHHH-ccCCCCCCEEE
Confidence 5433221 11233 788899999988876642210111 467888888888764343321111 23478888889
Q ss_pred ecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCC---Ccccccceeec
Q 045871 350 LSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSN---SDETCDFELQK 426 (541)
Q Consensus 350 L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~---~~~~~l~~L~l 426 (541)
+++|.++......+... ++|++|+++++ .++... ..+...+++|+.|++............. .....++.+++
T Consensus 181 l~~n~l~~~~~~~l~~l--~~L~~L~l~~n-~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L 256 (353)
T 2z80_A 181 IDASDLQSYEPKSLKSI--QNVSHLILHMK-QHILLL-EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256 (353)
T ss_dssp EEETTCCEECTTTTTTC--SEEEEEEEECS-CSTTHH-HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE
T ss_pred CCCCCcCccCHHHHhcc--ccCCeecCCCC-ccccch-hhhhhhcccccEEECCCCccccccccccccccccchhhcccc
Confidence 98887776544444444 57888888885 454322 2334458888888754322211111100 00111345555
Q ss_pred ccchhhc---HHHHHHHHhCCCccEEEcCCCc--cHH-HHHhcCCCCCeeeccCCCCCCH
Q 045871 427 AFNNKLH---LMYQKLIIKHCCLKKLSLWGCS--GLD-ALCLNCPELNDLNLNSCRNLRP 480 (541)
Q Consensus 427 ~~c~~l~---~~~~~~l~~~~~L~~L~L~~~~--~l~-~l~~~~~~L~~L~L~~c~~~~d 480 (541)
..+.--+ ..+...+..+++|++|+|+++. .+. .++..+++|++|+|++|....+
T Consensus 257 ~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp ESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 5543222 1344567889999999999984 332 2346789999999999986544
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.23 E-value=7.6e-12 Score=124.97 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=37.3
Q ss_pred CCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHH-HHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCC
Q 045871 291 PRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDAS-VAAIASTYSKLELLDLSGSSISDSGIGMICNVFPN 369 (541)
Q Consensus 291 ~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~-l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~ 369 (541)
++|++|++++|.+.......+ ..+++|+.|++.++ .++..+ .......+++|++|++++|.++. +....++
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~ 192 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVF--NGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITT-----IPQGLPP 192 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHH--TTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCCS-----CCSSCCT
T ss_pred ccccEEECCCCcccccCHhHh--cCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCcccc-----CCccccc
Confidence 456666666665543322222 34566666666554 222111 01112335566666666655443 1111123
Q ss_pred CccEEeccCC
Q 045871 370 TLSRLLLALC 379 (541)
Q Consensus 370 ~L~~L~l~~c 379 (541)
+|++|+++++
T Consensus 193 ~L~~L~l~~n 202 (330)
T 1xku_A 193 SLTELHLDGN 202 (330)
T ss_dssp TCSEEECTTS
T ss_pred cCCEEECCCC
Confidence 5666666653
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.22 E-value=5.4e-12 Score=126.06 Aligned_cols=219 Identities=18% Similarity=0.139 Sum_probs=112.8
Q ss_pred CCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHH
Q 045871 260 PNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIA 339 (541)
Q Consensus 260 ~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~ 339 (541)
++|+.|+++++....-.. ..+. .+++|++|++++|.+.......+ ..+++|++|+|+++ .++... .
T Consensus 52 ~~l~~L~L~~n~i~~~~~------~~~~-~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n-~l~~l~----~ 117 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKD------GDFK-NLKNLHTLILINNKISKISPGAF--APLVKLERLYLSKN-QLKELP----E 117 (330)
T ss_dssp TTCCEEECCSSCCCCBCT------TTTT-TCTTCCEEECCSSCCCCBCTTTT--TTCTTCCEEECCSS-CCSBCC----S
T ss_pred CCCeEEECCCCcCCEeCh------hhhc-cCCCCCEEECCCCcCCeeCHHHh--cCCCCCCEEECCCC-cCCccC----h
Confidence 456666666643222110 1122 56667777777666554321122 35666777777655 232100 0
Q ss_pred hcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHH-HHHHhcCCCcceecccCCcCCCCCCCCCCcc
Q 045871 340 STYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGI-QFATAQLPLLELMDCGMSICDPTSEDSNSDE 418 (541)
Q Consensus 340 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l-~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~ 418 (541)
...++|++|++++|.++......+... ++|+.|+++++ .++..++ ......+++|+.+++.......... ...
T Consensus 118 ~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~---~~~ 191 (330)
T 1xku_A 118 KMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLP 191 (330)
T ss_dssp SCCTTCCEEECCSSCCCBBCHHHHTTC--TTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS---SCC
T ss_pred hhcccccEEECCCCcccccCHhHhcCC--ccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCccccCCc---ccc
Confidence 113567777777766665444444444 56777777664 3332111 1122346666666643221111111 011
Q ss_pred cccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cHH-HHHhcCCCCCeeeccCCCCCCHhHHHhcCCCCcEecc
Q 045871 419 TCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GLD-ALCLNCPELNDLNLNSCRNLRPETLLLHCPRLESVHA 495 (541)
Q Consensus 419 ~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l~-~l~~~~~~L~~L~L~~c~~~~d~~l~~~~p~L~~L~l 495 (541)
..+++|+++++. +++.....+..+++|++|+|+++. ++. .....+++|++|+|++|....-...+..+++|+.|++
T Consensus 192 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 192 PSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 270 (330)
T ss_dssp TTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEEC
T ss_pred ccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEEC
Confidence 235677777664 332223345667778888887763 221 2334577788888877753321223456777888888
Q ss_pred cCCc
Q 045871 496 SGCQ 499 (541)
Q Consensus 496 ~~C~ 499 (541)
++|.
T Consensus 271 ~~N~ 274 (330)
T 1xku_A 271 HNNN 274 (330)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 7765
No 54
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.22 E-value=2.2e-12 Score=144.13 Aligned_cols=243 Identities=13% Similarity=0.114 Sum_probs=129.3
Q ss_pred hCCCCceeeecC----------ccCCCCcceEEecccCCCCCchhHHHHHHHH---hcCCCCCCeEEecCcccchHHHHH
Q 045871 244 DKRCLASLKMEG----------IFNCPNMREISLEFSRQENDSTDLTTMADGL---GRNCPRLQNIHIASIRLSHSVVLA 310 (541)
Q Consensus 244 ~~~~L~~L~l~~----------~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l---~~~~~~L~~L~l~~~~i~~~~~~~ 310 (541)
.+++|+.|.+++ +..+++|++|+|++|..+... .+..-+..+ ...+++|+.|++++|.+..-....
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~-~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA-QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHH-HHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccc-cchHHHHhhhhcccccCCccEEEeeCCcCCccCChh
Confidence 445555555544 456778888888876523320 011111111 135678888888888776211101
Q ss_pred HHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCC-ccEEeccCCCCCCHHHHHH
Q 045871 311 LTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNT-LSRLLLALCPNITSSGIQF 389 (541)
Q Consensus 311 l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~-L~~L~l~~c~~l~~~~l~~ 389 (541)
.+ ..+++|+.|+|+++ .++ .+. ....+++|++|+|++|.++. ....+... .+ |+.|+|++| .++. +..
T Consensus 568 ~l-~~L~~L~~L~Ls~N-~l~--~lp-~~~~L~~L~~L~Ls~N~l~~-lp~~l~~l--~~~L~~L~Ls~N-~L~~--lp~ 636 (876)
T 4ecn_A 568 SL-QKMVKLGLLDCVHN-KVR--HLE-AFGTNVKLTDLKLDYNQIEE-IPEDFCAF--TDQVEGLGFSHN-KLKY--IPN 636 (876)
T ss_dssp HH-TTCTTCCEEECTTS-CCC--BCC-CCCTTSEESEEECCSSCCSC-CCTTSCEE--CTTCCEEECCSS-CCCS--CCS
T ss_pred hh-hcCCCCCEEECCCC-Ccc--cch-hhcCCCcceEEECcCCcccc-chHHHhhc--cccCCEEECcCC-CCCc--Cch
Confidence 22 57888888888876 344 222 23447788888888887762 11223333 45 888888885 3541 211
Q ss_pred HHhcC--CCcceecccCCcCCCCCCC---CC--CcccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cHHH-
Q 045871 390 ATAQL--PLLELMDCGMSICDPTSED---SN--SDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GLDA- 459 (541)
Q Consensus 390 l~~~~--~~L~~l~~~~~~~~~~~~~---~~--~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l~~- 459 (541)
....+ ++|+.|++........... .. .....++.|+|++|.- .......+..+++|+.|+|+++. .+..
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L-~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~ 715 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI-QKFPTELFATGSPISTIILSNNLMTSIPEN 715 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC-CSCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC-CccCHHHHccCCCCCEEECCCCcCCccChH
Confidence 11122 3377776432211110000 00 0112467888887653 32333345567888888888773 1111
Q ss_pred H-------HhcCCCCCeeeccCCCCCCHhHHH--hcCCCCcEecccCCc
Q 045871 460 L-------CLNCPELNDLNLNSCRNLRPETLL--LHCPRLESVHASGCQ 499 (541)
Q Consensus 460 l-------~~~~~~L~~L~L~~c~~~~d~~l~--~~~p~L~~L~l~~C~ 499 (541)
+ ..+|++|+.|+|++|....-.... ..+++|+.|+|++|.
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~ 764 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC 764 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSC
T ss_pred HhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCC
Confidence 0 122347777777777533112222 267777777777764
No 55
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.21 E-value=7.8e-13 Score=142.25 Aligned_cols=175 Identities=20% Similarity=0.152 Sum_probs=105.8
Q ss_pred cCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHH--HHHHHhhCCCCccEEeccCCCCCCHHHHHHHHh
Q 045871 315 GLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSG--IGMICNVFPNTLSRLLLALCPNITSSGIQFATA 392 (541)
Q Consensus 315 ~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~--l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~ 392 (541)
.+++|+.|++.++........ ..+++|++|++++|.++..+ ...+... ++|+.|++++|. ++..... ..
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~~~~--~~L~~L~l~~n~-l~~~~~~--~~ 393 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNGLSFKGCCSQSDFGT--TSLKYLDLSFNG-VITMSSN--FL 393 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSCCBEEEEEEHHHHTC--SCCCEEECCSCS-EEEEEEE--EE
T ss_pred cccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCccCcccccccccccc--CccCEEECCCCc-ccccccc--cc
Confidence 355566666655421111000 35778888888888776543 2333333 578888888863 3221100 23
Q ss_pred cCCCcceecccCCcCCCCCC-CCCCcccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCcc----HHHHHhcCCCC
Q 045871 393 QLPLLELMDCGMSICDPTSE-DSNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCSG----LDALCLNCPEL 467 (541)
Q Consensus 393 ~~~~L~~l~~~~~~~~~~~~-~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~----l~~l~~~~~~L 467 (541)
.+++|+.+++.......... ........+++|+|++|.-.. .....+..+++|++|+|.+|.- +......+++|
T Consensus 394 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472 (570)
T ss_dssp TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE-CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc-cchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence 57888888754321111111 112233447899999885432 3334567789999999999852 33445678999
Q ss_pred CeeeccCCCCCCH-hHHHhcCCCCcEecccCCc
Q 045871 468 NDLNLNSCRNLRP-ETLLLHCPRLESVHASGCQ 499 (541)
Q Consensus 468 ~~L~L~~c~~~~d-~~l~~~~p~L~~L~l~~C~ 499 (541)
++|+|++|..... ...+..+++|+.|++++|.
T Consensus 473 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 9999999874322 3345678999999999985
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.21 E-value=9.1e-13 Score=137.76 Aligned_cols=223 Identities=19% Similarity=0.070 Sum_probs=142.0
Q ss_pred CCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHH
Q 045871 260 PNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIA 339 (541)
Q Consensus 260 ~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~ 339 (541)
++|++|+|+++....-.. ..+. .+++|+.|++++|.+.......+ ..+++|++|+|+++ .++.... ...
T Consensus 75 ~~l~~L~L~~n~i~~~~~------~~~~-~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~-~~~ 143 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQA------DTFR-HLHHLEVLQLGRNSIRQIEVGAF--NGLASLNTLELFDN-WLTVIPS-GAF 143 (452)
T ss_dssp TTCSEEECCSSCCCEECT------TTTT-TCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSS-CCSBCCT-TTS
T ss_pred CCccEEECcCCcCceECH------HHcC-CCCCCCEEECCCCccCCcChhhc--cCcccCCEEECCCC-cCCccCh-hhh
Confidence 578888888754322111 1123 77888999998887765432222 46788899998876 3432111 123
Q ss_pred hcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCccc
Q 045871 340 STYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDET 419 (541)
Q Consensus 340 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~ 419 (541)
..+++|++|+|++|.|+......+... ++|+.|++++|+.++.... .....+++|+.|++........ .......
T Consensus 144 ~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~ 218 (452)
T 3zyi_A 144 EYLSKLRELWLRNNPIESIPSYAFNRV--PSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMCNIKDM--PNLTPLV 218 (452)
T ss_dssp SSCTTCCEEECCSCCCCEECTTTTTTC--TTCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTSCCSSC--CCCTTCT
T ss_pred cccCCCCEEECCCCCcceeCHhHHhcC--CcccEEeCCCCCCccccCh-hhccCCCCCCEEECCCCccccc--ccccccc
Confidence 347889999998887775433334333 5889999988776653221 1224578888887543322211 1122233
Q ss_pred ccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cH-HHHHhcCCCCCeeeccCCCCCCH-hHHHhcCCCCcEecc
Q 045871 420 CDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GL-DALCLNCPELNDLNLNSCRNLRP-ETLLLHCPRLESVHA 495 (541)
Q Consensus 420 ~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l-~~l~~~~~~L~~L~L~~c~~~~d-~~l~~~~p~L~~L~l 495 (541)
++++|+|+++.- .+.....+..+++|++|+|.++. ++ ...+..+++|+.|+|++|...+- ...+..+++|+.|+|
T Consensus 219 ~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 219 GLEELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp TCCEEECTTSCC-SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEEC
T ss_pred cccEEECcCCcC-cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEc
Confidence 478999998753 33334457788999999999884 22 23345789999999999964322 344567899999999
Q ss_pred cCCc
Q 045871 496 SGCQ 499 (541)
Q Consensus 496 ~~C~ 499 (541)
++++
T Consensus 298 ~~Np 301 (452)
T 3zyi_A 298 HHNP 301 (452)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9876
No 57
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.18 E-value=2.6e-13 Score=134.73 Aligned_cols=133 Identities=10% Similarity=0.114 Sum_probs=71.2
Q ss_pred CCccEEEeeecCCcccccCHH-HHHHHHhhCCCCceeeecCccCCCCcceEEecc-cCCCCCchhHHHHHHHHhcCCCCC
Q 045871 216 PNLESMEIYTSGSAVNRITGD-ELGRFVADKRCLASLKMEGIFNCPNMREISLEF-SRQENDSTDLTTMADGLGRNCPRL 293 (541)
Q Consensus 216 ~~L~~L~L~~c~~~~~~it~~-~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~-~~~~~~~~~l~~l~~~l~~~~~~L 293 (541)
.++++|+|+++. +++. .+... +..+++|++|++++ +......+ ..+. .+++|
T Consensus 50 ~~l~~L~L~~~~-----l~~~~~~~~~--------------l~~l~~L~~L~L~~~n~l~~~~p------~~l~-~l~~L 103 (313)
T 1ogq_A 50 YRVNNLDLSGLN-----LPKPYPIPSS--------------LANLPYLNFLYIGGINNLVGPIP------PAIA-KLTQL 103 (313)
T ss_dssp CCEEEEEEECCC-----CSSCEECCGG--------------GGGCTTCSEEEEEEETTEESCCC------GGGG-GCTTC
T ss_pred ceEEEEECCCCC-----ccCCcccChh--------------HhCCCCCCeeeCCCCCcccccCC------hhHh-cCCCC
Confidence 578999998754 3210 01111 33556777777764 32221111 1233 66777
Q ss_pred CeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccE
Q 045871 294 QNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSR 373 (541)
Q Consensus 294 ~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~ 373 (541)
++|++++|.+.......+ ..+++|++|+|+++ .++..... ....+++|++|+|++|.+++.....+.... ++|+.
T Consensus 104 ~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~N-~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~~L~~ 178 (313)
T 1ogq_A 104 HYLYITHTNVSGAIPDFL--SQIKTLVTLDFSYN-ALSGTLPP-SISSLPNLVGITFDGNRISGAIPDSYGSFS-KLFTS 178 (313)
T ss_dssp SEEEEEEECCEEECCGGG--GGCTTCCEEECCSS-EEESCCCG-GGGGCTTCCEEECCSSCCEEECCGGGGCCC-TTCCE
T ss_pred CEEECcCCeeCCcCCHHH--hCCCCCCEEeCCCC-ccCCcCCh-HHhcCCCCCeEECcCCcccCcCCHHHhhhh-hcCcE
Confidence 777777776653222222 45777777777765 22211111 123377777777777776644333344331 26777
Q ss_pred EeccCC
Q 045871 374 LLLALC 379 (541)
Q Consensus 374 L~l~~c 379 (541)
|+++++
T Consensus 179 L~L~~N 184 (313)
T 1ogq_A 179 MTISRN 184 (313)
T ss_dssp EECCSS
T ss_pred EECcCC
Confidence 777774
No 58
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.18 E-value=3e-12 Score=128.04 Aligned_cols=60 Identities=10% Similarity=-0.020 Sum_probs=30.4
Q ss_pred HHhCCCccEEEcCCCc--cHHHHHhcCCCCCeeeccCCCCCCH--hHHH-----hcCCCCcEecccCCc
Q 045871 440 IIKHCCLKKLSLWGCS--GLDALCLNCPELNDLNLNSCRNLRP--ETLL-----LHCPRLESVHASGCQ 499 (541)
Q Consensus 440 l~~~~~L~~L~L~~~~--~l~~l~~~~~~L~~L~L~~c~~~~d--~~l~-----~~~p~L~~L~l~~C~ 499 (541)
+..+++|++|+|+++. .+......+++|++|++++|....- ..+. ...+.|+.|++.+++
T Consensus 237 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred hhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence 4456666666666653 2222234566666666666652211 1111 113556666666655
No 59
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.18 E-value=9.8e-11 Score=125.79 Aligned_cols=35 Identities=11% Similarity=-0.112 Sum_probs=18.0
Q ss_pred ccceeecccchhhc-HHHHHHHHhCCCccEEEcCCC
Q 045871 420 CDFELQKAFNNKLH-LMYQKLIIKHCCLKKLSLWGC 454 (541)
Q Consensus 420 ~l~~L~l~~c~~l~-~~~~~~l~~~~~L~~L~L~~~ 454 (541)
.+++|+++++.--+ ......+..+++|+.|+|+++
T Consensus 378 ~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 378 RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp SCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred CCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence 35666666643221 133334555666666666655
No 60
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.17 E-value=1.1e-11 Score=122.74 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=31.7
Q ss_pred CCccEEEcCCCccHHHHHh-cCCCCCeeeccCCCCCCHhHHHhcCCCCcEecccCCcccc
Q 045871 444 CCLKKLSLWGCSGLDALCL-NCPELNDLNLNSCRNLRPETLLLHCPRLESVHASGCQELL 502 (541)
Q Consensus 444 ~~L~~L~L~~~~~l~~l~~-~~~~L~~L~L~~c~~~~d~~l~~~~p~L~~L~l~~C~~it 502 (541)
++|++|+|+++. +..+.. .+++|++|+|++|... .......+++|+.|++++.+ ++
T Consensus 251 ~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N~l~-~~~~~~~l~~L~~L~L~~N~-l~ 307 (310)
T 4glp_A 251 SALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSNRLN-RAPQPDELPEVDNLTLDGNP-FL 307 (310)
T ss_dssp TTCCCEECCSSC-CCSCCSCCCSCCSCEECCSCCCC-SCCCTTSCCCCSCEECSSTT-TS
T ss_pred CcCCEEECCCCC-CCchhhhhcCCCCEEECCCCcCC-CCchhhhCCCccEEECcCCC-CC
Confidence 456666665553 001111 1367888888877633 21124567888888888754 44
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.16 E-value=4.1e-13 Score=132.70 Aligned_cols=206 Identities=14% Similarity=0.081 Sum_probs=114.6
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHH
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAA 337 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~ 337 (541)
.+++|++|+|+++......... ..+. .+++|++|++++|.+..-.. .+ ..+++|++|+|.++ .+++.....
T Consensus 50 ~l~~L~~L~L~~n~l~~~~~~~----~~~~-~~~~L~~L~Ls~n~i~~l~~-~~--~~l~~L~~L~l~~n-~l~~~~~~~ 120 (306)
T 2z66_A 50 KLTQLTKLSLSSNGLSFKGCCS----QSDF-GTTSLKYLDLSFNGVITMSS-NF--LGLEQLEHLDFQHS-NLKQMSEFS 120 (306)
T ss_dssp TCTTCSEEECCSSCCCEEEEEE----HHHH-SCSCCCEEECCSCSEEEEEE-EE--ETCTTCCEEECTTS-EEESSTTTT
T ss_pred ccccCCEEECCCCccCcccCcc----cccc-cccccCEEECCCCccccChh-hc--CCCCCCCEEECCCC-cccccccch
Confidence 5577777777764332110000 1122 57788888888876543110 01 35777888888765 222211111
Q ss_pred HHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCc
Q 045871 338 IASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSD 417 (541)
Q Consensus 338 l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~ 417 (541)
....+++|++|++++|.++......+... ++|++|+++++ .+++..+......+++|+.|
T Consensus 121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L----------------- 180 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGL--SSLEVLKMAGN-SFQENFLPDIFTELRNLTFL----------------- 180 (306)
T ss_dssp TTTTCTTCCEEECTTSCCEECSTTTTTTC--TTCCEEECTTC-EEGGGEECSCCTTCTTCCEE-----------------
T ss_pred hhhhccCCCEEECCCCcCCccchhhcccC--cCCCEEECCCC-ccccccchhHHhhCcCCCEE-----------------
Confidence 23347778888888776654333333333 57778877775 23221111111234444444
Q ss_pred ccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cHH-HHHhcCCCCCeeeccCCCCCCH-hHHHhcC-CCCcE
Q 045871 418 ETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GLD-ALCLNCPELNDLNLNSCRNLRP-ETLLLHC-PRLES 492 (541)
Q Consensus 418 ~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l~-~l~~~~~~L~~L~L~~c~~~~d-~~l~~~~-p~L~~ 492 (541)
+|++|. +++.....+..+++|++|+|+++. ++. .....+++|+.|+|++|..... ...+..+ ++|+.
T Consensus 181 -------~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~ 252 (306)
T 2z66_A 181 -------DLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252 (306)
T ss_dssp -------ECTTSC-CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCE
T ss_pred -------ECCCCC-cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCE
Confidence 444432 221222335677899999999884 222 1345689999999999974432 2223455 48999
Q ss_pred ecccCCcc
Q 045871 493 VHASGCQE 500 (541)
Q Consensus 493 L~l~~C~~ 500 (541)
|++++++-
T Consensus 253 L~L~~N~~ 260 (306)
T 2z66_A 253 LNLTQNDF 260 (306)
T ss_dssp EECTTCCE
T ss_pred EEccCCCe
Confidence 99999763
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.16 E-value=1.5e-10 Score=125.09 Aligned_cols=204 Identities=18% Similarity=0.055 Sum_probs=116.1
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHH
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAA 337 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~ 337 (541)
.+++|++|+|++|....-. ..+++|+.|++++|.+..-. ..+++|++|+|+++ .++.
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~-----------~~l~~L~~L~L~~N~l~~lp------~~l~~L~~L~Ls~N-~l~~----- 155 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLP-----------ALPSGLCKLWIFGNQLTSLP------VLPPGLQELSVSDN-QLAS----- 155 (622)
T ss_dssp CCTTCCEEEECSCCCCCCC-----------CCCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSS-CCSC-----
T ss_pred CCCCCCEEECcCCcCCCCC-----------CCCCCcCEEECCCCCCCcCC------CCCCCCCEEECcCC-cCCC-----
Confidence 3466777777664322211 13556777777777655421 23466777777665 3331
Q ss_pred HHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCc
Q 045871 338 IASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSD 417 (541)
Q Consensus 338 l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~ 417 (541)
+....++|+.|++++|.|+.-. ..+ ++|+.|+++++ .++. +....++|+.|++....... ....
T Consensus 156 l~~~~~~L~~L~L~~N~l~~l~-----~~~-~~L~~L~Ls~N-~l~~-----l~~~~~~L~~L~L~~N~l~~----l~~~ 219 (622)
T 3g06_A 156 LPALPSELCKLWAYNNQLTSLP-----MLP-SGLQELSVSDN-QLAS-----LPTLPSELYKLWAYNNRLTS----LPAL 219 (622)
T ss_dssp CCCCCTTCCEEECCSSCCSCCC-----CCC-TTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSCCSS----CCCC
T ss_pred cCCccCCCCEEECCCCCCCCCc-----ccC-CCCcEEECCCC-CCCC-----CCCccchhhEEECcCCcccc----cCCC
Confidence 1123556777777777665411 222 56777777774 3432 11234566666533211111 1111
Q ss_pred ccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCccHHHHHhcCCCCCeeeccCCCCCCHhHHHhcCCCCcEecccC
Q 045871 418 ETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCSGLDALCLNCPELNDLNLNSCRNLRPETLLLHCPRLESVHASG 497 (541)
Q Consensus 418 ~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~l~~~~~~L~~L~L~~c~~~~d~~l~~~~p~L~~L~l~~ 497 (541)
..+++.|+|++|. +++.. ..+++|++|+|+++. +..+...+++|+.|+|++|....-...+..+++|+.|+|++
T Consensus 220 ~~~L~~L~Ls~N~-L~~lp----~~l~~L~~L~Ls~N~-L~~lp~~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 220 PSGLKELIVSGNR-LTSLP----VLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp CTTCCEEECCSSC-CSCCC----CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCS
T ss_pred CCCCCEEEccCCc-cCcCC----CCCCcCcEEECCCCC-CCcCCcccccCcEEeCCCCCCCcCCHHHhhccccCEEEecC
Confidence 2346788888763 33211 345789999999883 22333367899999999986432233356899999999999
Q ss_pred CccccHHHHH
Q 045871 498 CQELLVDTIH 507 (541)
Q Consensus 498 C~~it~~~i~ 507 (541)
++ ++.....
T Consensus 294 N~-l~~~~~~ 302 (622)
T 3g06_A 294 NP-LSERTLQ 302 (622)
T ss_dssp CC-CCHHHHH
T ss_pred CC-CCCcCHH
Confidence 87 6644333
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.16 E-value=1e-11 Score=130.98 Aligned_cols=146 Identities=13% Similarity=0.064 Sum_probs=88.0
Q ss_pred hcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCC
Q 045871 213 FSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPR 292 (541)
Q Consensus 213 ~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~ 292 (541)
..+++|++|+|+++. +..+.... +..+++|++|+|++|....... +. .+++
T Consensus 31 ~~~~~L~~L~Ls~n~--l~~~~~~~------------------~~~l~~L~~L~Ls~N~l~~~~~--------l~-~l~~ 81 (487)
T 3oja_A 31 QSAWNVKELDLSGNP--LSQISAAD------------------LAPFTKLELLNLSSNVLYETLD--------LE-SLST 81 (487)
T ss_dssp TTGGGCCEEECCSSC--CCCCCGGG------------------GTTCTTCCEEECTTSCCEEEEE--------CT-TCTT
T ss_pred ccCCCccEEEeeCCc--CCCCCHHH------------------HhCCCCCCEEEeeCCCCCCCcc--------cc-cCCC
Confidence 344589999999764 22222211 3356777777777654322211 22 6778
Q ss_pred CCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCcc
Q 045871 293 LQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLS 372 (541)
Q Consensus 293 L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~ 372 (541)
|++|++++|.+..- ...++|+.|+|+++ .+++.. ...+++|++|+|++|.++......+... ++|+
T Consensus 82 L~~L~Ls~N~l~~l-------~~~~~L~~L~L~~N-~l~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~ 147 (487)
T 3oja_A 82 LRTLDLNNNYVQEL-------LVGPSIETLHAANN-NISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCR--SRVQ 147 (487)
T ss_dssp CCEEECCSSEEEEE-------EECTTCCEEECCSS-CCCCEE----ECCCSSCEEEECCSSCCCSGGGBCGGGG--SSEE
T ss_pred CCEEEecCCcCCCC-------CCCCCcCEEECcCC-cCCCCC----ccccCCCCEEECCCCCCCCCCchhhcCC--CCCC
Confidence 88888888876542 23477888888776 333211 1236778888888887776544344443 5788
Q ss_pred EEeccCCCCCCHHHHHHHHhcCCCcceecc
Q 045871 373 RLLLALCPNITSSGIQFATAQLPLLELMDC 402 (541)
Q Consensus 373 ~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~ 402 (541)
.|+++++ .++......+...++.|+.|++
T Consensus 148 ~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 148 YLDLKLN-EIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp EEECTTS-CCCEEEGGGGGGGTTTCCEEEC
T ss_pred EEECCCC-CCCCcChHHHhhhCCcccEEec
Confidence 8888874 5554334444445677777764
No 64
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.14 E-value=9.2e-12 Score=140.34 Aligned_cols=265 Identities=17% Similarity=0.082 Sum_probs=146.0
Q ss_pred CCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC-----------ccCCCCcceEEecccCCCCCchhHHHHH
Q 045871 215 CPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG-----------IFNCPNMREISLEFSRQENDSTDLTTMA 283 (541)
Q Consensus 215 ~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~-----------~~~~~~L~~L~L~~~~~~~~~~~l~~l~ 283 (541)
.++|++|+|+++. +..+.... +..+++|+.|.+++ +..+++|++|+|++|......+
T Consensus 23 p~~l~~LdLs~N~--i~~i~~~~----~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p------ 90 (844)
T 3j0a_A 23 LNTTERLLLSFNY--IRTVTASS----FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP------ 90 (844)
T ss_dssp CTTCCEEEEESCC--CCEECSSS----CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT------
T ss_pred CCCcCEEECCCCc--CCccChhH----CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH------
Confidence 3799999999754 22222222 34567777777765 4566778888887754332111
Q ss_pred HHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChH---HH
Q 045871 284 DGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDS---GI 360 (541)
Q Consensus 284 ~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~---~l 360 (541)
..+. .+++|++|++++|.+.+..........+++|++|+|+++ .++..........+++|++|+|++|.++.. .+
T Consensus 91 ~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l 168 (844)
T 3j0a_A 91 DAFQ-GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168 (844)
T ss_dssp TSSC-SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG
T ss_pred hHcc-CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCeeCHHHc
Confidence 1122 677788888888776543211100046777888888776 333222212234577888888888766542 33
Q ss_pred HHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCC------CcceecccCCcCCCCCCC---------------------
Q 045871 361 GMICNVFPNTLSRLLLALCPNITSSGIQFATAQLP------LLELMDCGMSICDPTSED--------------------- 413 (541)
Q Consensus 361 ~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~------~L~~l~~~~~~~~~~~~~--------------------- 413 (541)
..+.. .+|+.|+++++. +.......+ ..|+ .|+.+++...........
T Consensus 169 ~~l~~---~~L~~L~L~~n~-l~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 169 EPLQG---KTLSFFSLAANS-LYSRVSVDW-GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp HHHHH---CSSCCCEECCSB-SCCCCCCCC-CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred ccccC---CccceEECCCCc-cccccccch-hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 33322 368888887753 322110000 1122 267776432210000000
Q ss_pred ------------C---CC--cccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cH-HHHHhcCCCCCeeecc
Q 045871 414 ------------S---NS--DETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GL-DALCLNCPELNDLNLN 473 (541)
Q Consensus 414 ------------~---~~--~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l-~~l~~~~~~L~~L~L~ 473 (541)
. .. ....+++|+|+++.- .+.....+..+++|+.|+|.++. ++ ...+..+++|++|+|+
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV-FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC-CEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCCcc-cccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 0 00 012357777777643 22222335567888888888774 22 2234568889999998
Q ss_pred CCCCCCH-hHHHhcCCCCcEecccCCc
Q 045871 474 SCRNLRP-ETLLLHCPRLESVHASGCQ 499 (541)
Q Consensus 474 ~c~~~~d-~~l~~~~p~L~~L~l~~C~ 499 (541)
+|..... ...+..+++|+.|+++++.
T Consensus 323 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 349 (844)
T 3j0a_A 323 YNLLGELYSSNFYGLPKVAYIDLQKNH 349 (844)
T ss_dssp SCCCSCCCSCSCSSCTTCCEEECCSCC
T ss_pred CCCCCccCHHHhcCCCCCCEEECCCCC
Confidence 8864322 2344678889999998874
No 65
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.13 E-value=6.6e-12 Score=125.39 Aligned_cols=220 Identities=22% Similarity=0.276 Sum_probs=129.7
Q ss_pred CCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEec
Q 045871 189 CSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISLE 268 (541)
Q Consensus 189 ~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L~ 268 (541)
..++++|+|+++ .+. .+..-...+++|++|+|+++. ++. +.. .+..+++|++|+|+
T Consensus 80 ~~~l~~L~L~~n-~l~--~lp~~l~~l~~L~~L~L~~n~-----l~~--lp~--------------~~~~l~~L~~L~Ls 135 (328)
T 4fcg_A 80 QPGRVALELRSV-PLP--QFPDQAFRLSHLQHMTIDAAG-----LME--LPD--------------TMQQFAGLETLTLA 135 (328)
T ss_dssp STTCCEEEEESS-CCS--SCCSCGGGGTTCSEEEEESSC-----CCC--CCS--------------CGGGGTTCSEEEEE
T ss_pred ccceeEEEccCC-Cch--hcChhhhhCCCCCEEECCCCC-----ccc--hhH--------------HHhccCCCCEEECC
Confidence 468999999984 332 111112347899999999754 331 100 03356888888888
Q ss_pred ccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHH-------HhcCCCCCEEEcCCCCCCCHHHHHHHHhc
Q 045871 269 FSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALT-------AAGLRGLRMLSLVLGSEITDASVAAIAST 341 (541)
Q Consensus 269 ~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~-------~~~~~~L~~L~L~~~~~i~d~~l~~l~~~ 341 (541)
+|... ..+ ..+. .+++|++|++++|.+.......+. ...+++|++|+|+++ .++ .+......
T Consensus 136 ~n~l~-~lp------~~l~-~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~--~lp~~l~~ 204 (328)
T 4fcg_A 136 RNPLR-ALP------ASIA-SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIR--SLPASIAN 204 (328)
T ss_dssp SCCCC-CCC------GGGG-GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCC--CCCGGGGG
T ss_pred CCccc-cCc------HHHh-cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcC--cchHhhcC
Confidence 76443 221 1233 788999999998754332211110 024889999999887 444 12122445
Q ss_pred CCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCccccc
Q 045871 342 YSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDETCD 421 (541)
Q Consensus 342 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l 421 (541)
+++|++|+|++|.++... ..+... ++|+.|++++|...... +
T Consensus 205 l~~L~~L~L~~N~l~~l~-~~l~~l--~~L~~L~Ls~n~~~~~~---------p-------------------------- 246 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLSALG-PAIHHL--PKLEELDLRGCTALRNY---------P-------------------------- 246 (328)
T ss_dssp CTTCCEEEEESSCCCCCC-GGGGGC--TTCCEEECTTCTTCCBC---------C--------------------------
T ss_pred CCCCCEEEccCCCCCcCc-hhhccC--CCCCEEECcCCcchhhh---------H--------------------------
Confidence 899999999999777421 123333 68999999987543210 0
Q ss_pred ceeecccchhhcHHHHHHHHhCCCccEEEcCCCc---cHHHHHhcCCCCCeeeccCCCCCCH-hHHHhcCCCCcEecccC
Q 045871 422 FELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS---GLDALCLNCPELNDLNLNSCRNLRP-ETLLLHCPRLESVHASG 497 (541)
Q Consensus 422 ~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~---~l~~l~~~~~~L~~L~L~~c~~~~d-~~l~~~~p~L~~L~l~~ 497 (541)
..+..+++|++|+|.+|. .+......+++|++|+|++|..+.. ...+..+++|+.+++..
T Consensus 247 ----------------~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 247 ----------------PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp ----------------CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred ----------------HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 002334555666665553 1122234567777777777765544 33445677777776654
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.12 E-value=4.5e-12 Score=126.00 Aligned_cols=240 Identities=16% Similarity=0.126 Sum_probs=153.9
Q ss_pred hhHHHHHhhCCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC----
Q 045871 180 GFVGSVLQKCSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG---- 255 (541)
Q Consensus 180 ~~l~~l~~~~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~---- 255 (541)
..+..+...+++|++|+|+++ .+++.. ......+++|++|+|+++. ++... . +..+++|+.|.+++
T Consensus 24 ~~~~~~~~~~~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-----l~~~~--~-~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLSGN-PLSQIS-AADLAPFTKLELLNLSSNV-----LYETL--D-LESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp HHHHHHHTTGGGCSEEECTTS-CCCCCC-HHHHTTCTTCCEEECTTSC-----CEEEE--E-ETTCTTCCEEECCSSEEE
T ss_pred hhHHHHhccCCCCCEEECcCC-ccCcCC-HHHhhCCCcCCEEECCCCc-----CCcch--h-hhhcCCCCEEECcCCccc
Confidence 345566666778999999985 443322 1223567999999999764 33211 1 56678899999887
Q ss_pred -ccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHH
Q 045871 256 -IFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDAS 334 (541)
Q Consensus 256 -~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~ 334 (541)
+...++|++|+++++...... ...+++|++|++++|.+.......+ ..+++|+.|+|+++ .+++..
T Consensus 94 ~l~~~~~L~~L~l~~n~l~~~~----------~~~~~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N-~l~~~~ 160 (317)
T 3o53_A 94 ELLVGPSIETLHAANNNISRVS----------CSRGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLN-EIDTVN 160 (317)
T ss_dssp EEEECTTCCEEECCSSCCSEEE----------ECCCSSCEEEECCSSCCCSGGGBCT--GGGSSEEEEECTTS-CCCEEE
T ss_pred cccCCCCcCEEECCCCccCCcC----------ccccCCCCEEECCCCCCCCccchhh--hccCCCCEEECCCC-CCCccc
Confidence 445689999999985443221 1257889999999998876432222 46789999999986 566544
Q ss_pred HHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCC
Q 045871 335 VAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDS 414 (541)
Q Consensus 335 l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~ 414 (541)
...+...+++|++|+|++|.|+... .... .++|++|+++++ .++..... ...+++|+.|++....
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~--l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N~-------- 225 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDVK--GQVV--FAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNNK-------- 225 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEE--CCCC--CTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTSC--------
T ss_pred HHHHhhccCcCCEEECCCCcCcccc--cccc--cccCCEEECCCC-cCCcchhh--hcccCcccEEECcCCc--------
Confidence 4455556899999999999887641 1111 268999999995 55532111 3356777777643211
Q ss_pred CCcccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc----cHHHHHhcCCCCCeeeccCC
Q 045871 415 NSDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS----GLDALCLNCPELNDLNLNSC 475 (541)
Q Consensus 415 ~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~----~l~~l~~~~~~L~~L~L~~c 475 (541)
++. +...+..+++|+.|+|+++. .+......+++|+.|++..+
T Consensus 226 -----------------l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 226 -----------------LVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp -----------------CCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----------------ccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 110 00113445677777777664 33445555666776666644
No 67
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.12 E-value=3.5e-12 Score=127.37 Aligned_cols=200 Identities=20% Similarity=0.208 Sum_probs=110.7
Q ss_pred CCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHH
Q 045871 259 CPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAI 338 (541)
Q Consensus 259 ~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l 338 (541)
.+++++|+|+++... ..+ ..++ .+++|++|++++|.+..- ...+ ..+++|++|+|+++ .++ .+...
T Consensus 80 ~~~l~~L~L~~n~l~-~lp------~~l~-~l~~L~~L~L~~n~l~~l-p~~~--~~l~~L~~L~Ls~n-~l~--~lp~~ 145 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFP------DQAF-RLSHLQHMTIDAAGLMEL-PDTM--QQFAGLETLTLARN-PLR--ALPAS 145 (328)
T ss_dssp STTCCEEEEESSCCS-SCC------SCGG-GGTTCSEEEEESSCCCCC-CSCG--GGGTTCSEEEEESC-CCC--CCCGG
T ss_pred ccceeEEEccCCCch-hcC------hhhh-hCCCCCEEECCCCCccch-hHHH--hccCCCCEEECCCC-ccc--cCcHH
Confidence 356666666664322 111 1133 466777777777765511 1111 35677777777765 333 11112
Q ss_pred HhcCCCccEEEecCCCCChHHHHHHHh--------hCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCC
Q 045871 339 ASTYSKLELLDLSGSSISDSGIGMICN--------VFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPT 410 (541)
Q Consensus 339 ~~~~~~L~~L~L~~~~i~~~~l~~l~~--------~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~ 410 (541)
...+++|++|+|++|.+.......+.. .+ ++|+.|++++| .++. +......+++|+.|++
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l-~~L~~L~L~~n-~l~~--lp~~l~~l~~L~~L~L-------- 213 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGL-VNLQSLRLEWT-GIRS--LPASIANLQNLKSLKI-------- 213 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES-TTCCEEEEEEE-CCCC--CCGGGGGCTTCCEEEE--------
T ss_pred HhcCcCCCEEECCCCCCccccChhHhhccchhhhccC-CCCCEEECcCC-CcCc--chHhhcCCCCCCEEEc--------
Confidence 334677777777775333221111111 11 46666666664 3331 1111233455555543
Q ss_pred CCCCCCcccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc---cHHHHHhcCCCCCeeeccCCCCCCH-hHHHhc
Q 045871 411 SEDSNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS---GLDALCLNCPELNDLNLNSCRNLRP-ETLLLH 486 (541)
Q Consensus 411 ~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~---~l~~l~~~~~~L~~L~L~~c~~~~d-~~l~~~ 486 (541)
++|.-.+ +...+..+++|++|+|++|. .+......+++|++|+|++|..+.. ...+..
T Consensus 214 ----------------~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~ 275 (328)
T 4fcg_A 214 ----------------RNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275 (328)
T ss_dssp ----------------ESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG
T ss_pred ----------------cCCCCCc--CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc
Confidence 2221111 01125678899999999985 2223345789999999999987655 333578
Q ss_pred CCCCcEecccCCcccc
Q 045871 487 CPRLESVHASGCQELL 502 (541)
Q Consensus 487 ~p~L~~L~l~~C~~it 502 (541)
+++|+.|+|++|..+.
T Consensus 276 l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 276 LTQLEKLDLRGCVNLS 291 (328)
T ss_dssp CTTCCEEECTTCTTCC
T ss_pred CCCCCEEeCCCCCchh
Confidence 9999999999998554
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.11 E-value=6.3e-12 Score=122.79 Aligned_cols=204 Identities=17% Similarity=0.098 Sum_probs=127.8
Q ss_pred CCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHH
Q 045871 259 CPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAI 338 (541)
Q Consensus 259 ~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l 338 (541)
.++|++|+++++....-. ...+. .+++|++|+++++.+.......+ ..+++|++|+|+++..++......
T Consensus 31 ~~~l~~L~l~~n~i~~~~------~~~~~-~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~l~~~~~~~- 100 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVP------AASFR-ACRNLTILWLHSNVLARIDAAAF--TGLALLEQLDLSDNAQLRSVDPAT- 100 (285)
T ss_dssp CTTCSEEECTTSCCCEEC------TTTTT-TCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSCTTCCCCCTTT-
T ss_pred CCCceEEEeeCCcCCccC------HHHcc-cCCCCCEEECCCCccceeCHhhc--CCccCCCEEeCCCCCCccccCHHH-
Confidence 468999999875432211 11233 78899999999987765432222 468899999998874344322222
Q ss_pred HhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCcc
Q 045871 339 ASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDE 418 (541)
Q Consensus 339 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~ 418 (541)
...+++|++|+|++|.++......+... ++|++|+++++ .++.... .....+++|+.|++
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l---------------- 160 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGPGLFRGL--AALQYLYLQDN-ALQALPD-DTFRDLGNLTHLFL---------------- 160 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTC--TTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEEC----------------
T ss_pred hcCCcCCCEEECCCCcCCEECHhHhhCC--cCCCEEECCCC-cccccCH-hHhccCCCccEEEC----------------
Confidence 2347899999999988776433334433 68999999885 3432111 11133566666653
Q ss_pred cccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cH-HHHHhcCCCCCeeeccCCCCCCH-hHHHhcCCCCcEec
Q 045871 419 TCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GL-DALCLNCPELNDLNLNSCRNLRP-ETLLLHCPRLESVH 494 (541)
Q Consensus 419 ~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l-~~l~~~~~~L~~L~L~~c~~~~d-~~l~~~~p~L~~L~ 494 (541)
+++. ++......+..+++|++|+|+++. ++ ......+++|+.|+|++|..... ...+..+++|+.|+
T Consensus 161 --------~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 161 --------HGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231 (285)
T ss_dssp --------CSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred --------CCCc-ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEe
Confidence 3321 111111225567889999998874 22 23345688999999998864332 34567899999999
Q ss_pred ccCCccc
Q 045871 495 ASGCQEL 501 (541)
Q Consensus 495 l~~C~~i 501 (541)
+++++-.
T Consensus 232 l~~N~~~ 238 (285)
T 1ozn_A 232 LNDNPWV 238 (285)
T ss_dssp CCSSCEE
T ss_pred ccCCCcc
Confidence 9987643
No 69
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.11 E-value=1.1e-12 Score=130.09 Aligned_cols=223 Identities=17% Similarity=0.026 Sum_probs=144.3
Q ss_pred CCcceEEecccCCCC--CchhHHHHHHHHhcCCCCCCeEEecC-cccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHH
Q 045871 260 PNMREISLEFSRQEN--DSTDLTTMADGLGRNCPRLQNIHIAS-IRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVA 336 (541)
Q Consensus 260 ~~L~~L~L~~~~~~~--~~~~l~~l~~~l~~~~~~L~~L~l~~-~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~ 336 (541)
.++++|+|+++.... ..+ ..+. .+++|++|++++ +.+.......+ ..+++|++|+|+++ .++.....
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~------~~l~-~l~~L~~L~L~~~n~l~~~~p~~l--~~l~~L~~L~Ls~n-~l~~~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIP------SSLA-NLPYLNFLYIGGINNLVGPIPPAI--AKLTQLHYLYITHT-NVSGAIPD 119 (313)
T ss_dssp CCEEEEEEECCCCSSCEECC------GGGG-GCTTCSEEEEEEETTEESCCCGGG--GGCTTCSEEEEEEE-CCEEECCG
T ss_pred ceEEEEECCCCCccCCcccC------hhHh-CCCCCCeeeCCCCCcccccCChhH--hcCCCCCEEECcCC-eeCCcCCH
Confidence 578999999865543 211 2344 789999999995 66554322223 57999999999886 34321112
Q ss_pred HHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCC-CcceecccCCcCCCCCCCCC
Q 045871 337 AIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLP-LLELMDCGMSICDPTSEDSN 415 (541)
Q Consensus 337 ~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~-~L~~l~~~~~~~~~~~~~~~ 415 (541)
. ...+++|++|+|++|.++......+... ++|++|+++++ .++......+ ..++ .|+.+++.............
T Consensus 120 ~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~L~~N-~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~ 194 (313)
T 1ogq_A 120 F-LSQIKTLVTLDFSYNALSGTLPPSISSL--PNLVGITFDGN-RISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTF 194 (313)
T ss_dssp G-GGGCTTCCEEECCSSEEESCCCGGGGGC--TTCCEEECCSS-CCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGG
T ss_pred H-HhCCCCCCEEeCCCCccCCcCChHHhcC--CCCCeEECcCC-cccCcCCHHH-hhhhhcCcEEECcCCeeeccCChHH
Confidence 2 3348999999999997765433445544 68999999996 4542111222 2355 88999854322111111111
Q ss_pred CcccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cHHHHHhcCCCCCeeeccCCCCCCH-hHHHhcCCCCcE
Q 045871 416 SDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GLDALCLNCPELNDLNLNSCRNLRP-ETLLLHCPRLES 492 (541)
Q Consensus 416 ~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l~~l~~~~~~L~~L~L~~c~~~~d-~~l~~~~p~L~~ 492 (541)
....+++|+|+++.- .+.....+..+++|+.|+|.++. +.......+++|++|+|++|..... ...+..+++|+.
T Consensus 195 -~~l~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 272 (313)
T 1ogq_A 195 -ANLNLAFVDLSRNML-EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272 (313)
T ss_dssp -GGCCCSEEECCSSEE-EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred -hCCcccEEECcCCcc-cCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCE
Confidence 111278999998753 33444556778999999999984 2222245689999999999985422 344578999999
Q ss_pred ecccCCc
Q 045871 493 VHASGCQ 499 (541)
Q Consensus 493 L~l~~C~ 499 (541)
|+|++|.
T Consensus 273 L~Ls~N~ 279 (313)
T 1ogq_A 273 LNVSFNN 279 (313)
T ss_dssp EECCSSE
T ss_pred EECcCCc
Confidence 9999986
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.10 E-value=9.5e-12 Score=129.50 Aligned_cols=218 Identities=14% Similarity=0.086 Sum_probs=109.3
Q ss_pred CCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC----------ccCCCCcceEEecccCCCCCchhHHHHHHH
Q 045871 216 PNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG----------IFNCPNMREISLEFSRQENDSTDLTTMADG 285 (541)
Q Consensus 216 ~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~----------~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~ 285 (541)
++++.|+|+++. +..+.... +..+++|+.|.+++ +..+++|++|+|++|....-.. .
T Consensus 64 ~~l~~L~L~~n~--i~~~~~~~----~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-------~ 130 (440)
T 3zyj_A 64 TNTRLLNLHENQ--IQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN-------G 130 (440)
T ss_dssp TTCSEEECCSCC--CCEECTTT----TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCT-------T
T ss_pred CCCcEEEccCCc--CCeeCHHH----hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCH-------h
Confidence 689999998754 22222222 24456666666655 3456666677666643221110 1
Q ss_pred HhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHh
Q 045871 286 LGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICN 365 (541)
Q Consensus 286 l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~ 365 (541)
....+++|++|++++|.+.......+ ..+++|+.|+|.++..++..... ...++++|++|+|++|.++.- ..+..
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~--~~~~~ 205 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLREI--PNLTP 205 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTSCCSSC--CCCTT
T ss_pred HhhccccCceeeCCCCcccccCHHHh--hhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCCcCccc--cccCC
Confidence 11256667777776665543221111 35666677776665433321111 122366677777766655532 11222
Q ss_pred hCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCcccccceeecccchhhcHHHHHHHHhCCC
Q 045871 366 VFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDETCDFELQKAFNNKLHLMYQKLIIKHCC 445 (541)
Q Consensus 366 ~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~ 445 (541)
. .+|+.|+|+++ .++.... .....+++|+.|+ |+++. +++.....+..+++
T Consensus 206 l--~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~------------------------L~~n~-l~~~~~~~~~~l~~ 256 (440)
T 3zyj_A 206 L--IKLDELDLSGN-HLSAIRP-GSFQGLMHLQKLW------------------------MIQSQ-IQVIERNAFDNLQS 256 (440)
T ss_dssp C--SSCCEEECTTS-CCCEECT-TTTTTCTTCCEEE------------------------CTTCC-CCEECTTSSTTCTT
T ss_pred C--cccCEEECCCC-ccCccCh-hhhccCccCCEEE------------------------CCCCc-eeEEChhhhcCCCC
Confidence 2 46666666664 3432111 1112355555554 33332 11111222455677
Q ss_pred ccEEEcCCCc--cH-HHHHhcCCCCCeeeccCCCCCCH
Q 045871 446 LKKLSLWGCS--GL-DALCLNCPELNDLNLNSCRNLRP 480 (541)
Q Consensus 446 L~~L~L~~~~--~l-~~l~~~~~~L~~L~L~~c~~~~d 480 (541)
|+.|+|+++. .+ ...+..+++|+.|+|++|...-|
T Consensus 257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred CCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 7777777763 22 12334567777777777665444
No 71
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.10 E-value=6e-11 Score=105.62 Aligned_cols=80 Identities=14% Similarity=0.227 Sum_probs=62.7
Q ss_pred CCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCC-CCChHHHHHHHhh---CCCCccEEeccCCCCCCHHHHHHHHh
Q 045871 317 RGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGS-SISDSGIGMICNV---FPNTLSRLLLALCPNITSSGIQFATA 392 (541)
Q Consensus 317 ~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~---~~~~L~~L~l~~c~~l~~~~l~~l~~ 392 (541)
..|+.|+|++|. |+|.++..+. +|++|++|+|++| .|+|.|+..++.. + ++|++|+|++|..|||.|+..++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~-~~L~~L~Ls~C~~ITD~Gl~~L~- 136 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQ-KSMLEMEIISCGNVTDKGIIALH- 136 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHH-HHCCEEEEESCTTCCHHHHHHGG-
T ss_pred ceEeEEeCcCCC-ccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhccccc-CCCCEEEcCCCCcCCHHHHHHHh-
Confidence 358888988885 8888888874 5888999999888 7899888888863 3 36888889888888888887775
Q ss_pred cCCCccee
Q 045871 393 QLPLLELM 400 (541)
Q Consensus 393 ~~~~L~~l 400 (541)
.|++|+.|
T Consensus 137 ~~~~L~~L 144 (176)
T 3e4g_A 137 HFRNLKYL 144 (176)
T ss_dssp GCTTCCEE
T ss_pred cCCCCCEE
Confidence 35555444
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.09 E-value=3.5e-12 Score=134.51 Aligned_cols=237 Identities=16% Similarity=0.122 Sum_probs=126.0
Q ss_pred HHhhCCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcce
Q 045871 185 VLQKCSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMRE 264 (541)
Q Consensus 185 l~~~~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~ 264 (541)
+...+++|++|+|+++ .+.+.. ......+++|++|+|++|. +++.. . +..+++|++
T Consensus 29 l~~~~~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~Ls~N~-----l~~~~--------------~---l~~l~~L~~ 84 (487)
T 3oja_A 29 LRQSAWNVKELDLSGN-PLSQIS-AADLAPFTKLELLNLSSNV-----LYETL--------------D---LESLSTLRT 84 (487)
T ss_dssp TSTTGGGCCEEECCSS-CCCCCC-GGGGTTCTTCCEEECTTSC-----CEEEE--------------E---CTTCTTCCE
T ss_pred hcccCCCccEEEeeCC-cCCCCC-HHHHhCCCCCCEEEeeCCC-----CCCCc--------------c---cccCCCCCE
Confidence 3334458999999995 333211 1123567999999999764 33200 0 235567777
Q ss_pred EEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCC
Q 045871 265 ISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSK 344 (541)
Q Consensus 265 L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~ 344 (541)
|+|++|... +. . ..++|+.|++++|.+..... ..+++|+.|+|+++ .+++.....+ ..+++
T Consensus 85 L~Ls~N~l~-~l----------~-~~~~L~~L~L~~N~l~~~~~-----~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~ 145 (487)
T 3oja_A 85 LDLNNNYVQ-EL----------L-VGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANN-KITMLRDLDE-GCRSR 145 (487)
T ss_dssp EECCSSEEE-EE----------E-ECTTCCEEECCSSCCCCEEE-----CCCSSCEEEECCSS-CCCSGGGBCG-GGGSS
T ss_pred EEecCCcCC-CC----------C-CCCCcCEEECcCCcCCCCCc-----cccCCCCEEECCCC-CCCCCCchhh-cCCCC
Confidence 777764322 11 1 34677777777776654321 24567777777765 3443211112 23677
Q ss_pred ccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCccccccee
Q 045871 345 LELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDETCDFEL 424 (541)
Q Consensus 345 L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L 424 (541)
|++|+|++|.+++.....+...+ ++|+.|+|++| .++... .. ..++.|+.|+
T Consensus 146 L~~L~Ls~N~l~~~~~~~l~~~l-~~L~~L~Ls~N-~l~~~~--~~-~~l~~L~~L~----------------------- 197 (487)
T 3oja_A 146 VQYLDLKLNEIDTVNFAELAASS-DTLEHLNLQYN-FIYDVK--GQ-VVFAKLKTLD----------------------- 197 (487)
T ss_dssp EEEEECTTSCCCEEEGGGGGGGT-TTCCEEECTTS-CCCEEE--CC-CCCTTCCEEE-----------------------
T ss_pred CCEEECCCCCCCCcChHHHhhhC-CcccEEecCCC-cccccc--cc-ccCCCCCEEE-----------------------
Confidence 78888887777765555554333 47888888775 343210 00 0244444443
Q ss_pred ecccchhhcHHHHHHHHhCCCccEEEcCCCc--cHHHHHhcCCCCCeeeccCCCCCCH--hHHHhcCCCCcEecc
Q 045871 425 QKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GLDALCLNCPELNDLNLNSCRNLRP--ETLLLHCPRLESVHA 495 (541)
Q Consensus 425 ~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l~~l~~~~~~L~~L~L~~c~~~~d--~~l~~~~p~L~~L~l 495 (541)
|+++. +++... .+..+++|+.|+|+++. ++......+++|+.|++++|....+ ..+...++.|+.|++
T Consensus 198 -Ls~N~-l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 198 -LSSNK-LAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp -CCSSC-CCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred -CCCCC-CCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 22221 110000 13455666777776663 3322334456677777776664422 233444555555444
No 73
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.09 E-value=9.1e-12 Score=124.54 Aligned_cols=31 Identities=6% Similarity=0.125 Sum_probs=17.8
Q ss_pred CccEEEecCCCCCChhhHHHHhh-cCCCccEEEeeecC
Q 045871 191 ALVRLSLTMESDVDATMLACIAF-SCPNLESMEIYTSG 227 (541)
Q Consensus 191 ~L~~L~L~~~~~~~~~~L~~l~~-~~~~L~~L~L~~c~ 227 (541)
.++.++++++. ++ .+.. ..++|+.|+|+++.
T Consensus 34 ~l~~l~~~~~~-l~-----~ip~~~~~~l~~L~l~~n~ 65 (332)
T 2ft3_A 34 HLRVVQCSDLG-LK-----AVPKEISPDTTLLDLQNND 65 (332)
T ss_dssp ETTEEECCSSC-CS-----SCCSCCCTTCCEEECCSSC
T ss_pred cCCEEECCCCC-cc-----ccCCCCCCCCeEEECCCCc
Confidence 47777777632 21 1111 23688888888754
No 74
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.09 E-value=9.8e-12 Score=121.45 Aligned_cols=195 Identities=16% Similarity=0.116 Sum_probs=124.7
Q ss_pred CCCceeeecC----------ccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcc-cchHHHHHHHHh
Q 045871 246 RCLASLKMEG----------IFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIR-LSHSVVLALTAA 314 (541)
Q Consensus 246 ~~L~~L~l~~----------~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~ 314 (541)
++|+.|.+++ +..+++|++|+++++....-.. ..+. .+++|++|++++|. +.......+ .
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~------~~~~-~l~~L~~L~l~~n~~l~~~~~~~~--~ 102 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA------AAFT-GLALLEQLDLSDNAQLRSVDPATF--H 102 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT------TTTT-TCTTCCEEECCSCTTCCCCCTTTT--T
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH------hhcC-CccCCCEEeCCCCCCccccCHHHh--c
Confidence 5688888876 5678999999999864322111 1233 78999999999996 544322222 4
Q ss_pred cCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcC
Q 045871 315 GLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQL 394 (541)
Q Consensus 315 ~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~ 394 (541)
.+++|++|+|.++ .++.... .....+++|++|++++|.++......+... ++|+.|+++++ .++.... .....+
T Consensus 103 ~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n-~l~~~~~-~~~~~l 176 (285)
T 1ozn_A 103 GLGRLHTLHLDRC-GLQELGP-GLFRGLAALQYLYLQDNALQALPDDTFRDL--GNLTHLFLHGN-RISSVPE-RAFRGL 176 (285)
T ss_dssp TCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTC--TTCCEEECCSS-CCCEECT-TTTTTC
T ss_pred CCcCCCEEECCCC-cCCEECH-hHhhCCcCCCEEECCCCcccccCHhHhccC--CCccEEECCCC-cccccCH-HHhcCc
Confidence 6899999999987 3443211 123458999999999998876443334444 68999999996 4542111 112346
Q ss_pred CCcceecccCCcCCCCCCCCCCcccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cH-HHHHhcCCCCCeee
Q 045871 395 PLLELMDCGMSICDPTSEDSNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GL-DALCLNCPELNDLN 471 (541)
Q Consensus 395 ~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l-~~l~~~~~~L~~L~ 471 (541)
++|+.|++ +++. +.+.....+..+++|+.|+|+++. ++ ......+++|++|+
T Consensus 177 ~~L~~L~l------------------------~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 177 HSLDRLLL------------------------HQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231 (285)
T ss_dssp TTCCEEEC------------------------CSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred cccCEEEC------------------------CCCc-ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEe
Confidence 66666653 2221 111112235567788888888874 22 24456788888888
Q ss_pred ccCCCCCCH
Q 045871 472 LNSCRNLRP 480 (541)
Q Consensus 472 L~~c~~~~d 480 (541)
|++|....+
T Consensus 232 l~~N~~~c~ 240 (285)
T 1ozn_A 232 LNDNPWVCD 240 (285)
T ss_dssp CCSSCEECS
T ss_pred ccCCCccCC
Confidence 888875543
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.08 E-value=1.7e-10 Score=114.11 Aligned_cols=101 Identities=22% Similarity=0.316 Sum_probs=62.9
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHH
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAA 337 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~ 337 (541)
.+++|++|++++|... +.. .+. .+++|++|++++|.+.+.. .+ ..+++|++|+|+++ .+++. ..
T Consensus 61 ~l~~L~~L~L~~n~i~-~~~-------~~~-~l~~L~~L~L~~n~l~~~~--~~--~~l~~L~~L~l~~n-~l~~~--~~ 124 (308)
T 1h6u_A 61 YLNNLIGLELKDNQIT-DLA-------PLK-NLTKITELELSGNPLKNVS--AI--AGLQSIKTLDLTST-QITDV--TP 124 (308)
T ss_dssp GCTTCCEEECCSSCCC-CCG-------GGT-TCCSCCEEECCSCCCSCCG--GG--TTCTTCCEEECTTS-CCCCC--GG
T ss_pred ccCCCCEEEccCCcCC-CCh-------hHc-cCCCCCEEEccCCcCCCch--hh--cCCCCCCEEECCCC-CCCCc--hh
Confidence 5677888888775332 221 133 6778888888888766532 12 46777888888776 34432 12
Q ss_pred HHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCC
Q 045871 338 IASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALC 379 (541)
Q Consensus 338 l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c 379 (541)
...+++|++|++++|.+++... +... ++|+.|++++|
T Consensus 125 -l~~l~~L~~L~l~~n~l~~~~~--l~~l--~~L~~L~l~~n 161 (308)
T 1h6u_A 125 -LAGLSNLQVLYLDLNQITNISP--LAGL--TNLQYLSIGNA 161 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGG--GGGC--TTCCEEECCSS
T ss_pred -hcCCCCCCEEECCCCccCcCcc--ccCC--CCccEEEccCC
Confidence 3447788888888876665322 3333 57777777775
No 76
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.08 E-value=1.1e-11 Score=129.39 Aligned_cols=131 Identities=13% Similarity=0.029 Sum_probs=75.3
Q ss_pred ccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHH
Q 045871 256 IFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASV 335 (541)
Q Consensus 256 ~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l 335 (541)
+..+++|++|+|+++....-.. .....+++|++|++++|.+.......+ ..+++|+.|+|.++..++....
T Consensus 119 ~~~l~~L~~L~L~~n~l~~~~~-------~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~ 189 (452)
T 3zyi_A 119 FNGLASLNTLELFDNWLTVIPS-------GAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISE 189 (452)
T ss_dssp TTTCTTCCEEECCSSCCSBCCT-------TTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECT
T ss_pred ccCcccCCEEECCCCcCCccCh-------hhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCCCCCCccccCh
Confidence 4456788888887754322111 112267788888888887654322122 4678888888887655443221
Q ss_pred HHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecc
Q 045871 336 AAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDC 402 (541)
Q Consensus 336 ~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~ 402 (541)
. ...++++|++|+|++|.+++. ..+... .+|+.|+|+++ .++.... .....+++|+.|++
T Consensus 190 ~-~~~~l~~L~~L~L~~n~l~~~--~~~~~l--~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L 249 (452)
T 3zyi_A 190 G-AFEGLFNLKYLNLGMCNIKDM--PNLTPL--VGLEELEMSGN-HFPEIRP-GSFHGLSSLKKLWV 249 (452)
T ss_dssp T-TTTTCTTCCEEECTTSCCSSC--CCCTTC--TTCCEEECTTS-CCSEECG-GGGTTCTTCCEEEC
T ss_pred h-hccCCCCCCEEECCCCccccc--cccccc--ccccEEECcCC-cCcccCc-ccccCccCCCEEEe
Confidence 1 123477888888888876642 122222 57888888884 4443211 11234666766664
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.01 E-value=3.1e-10 Score=112.34 Aligned_cols=206 Identities=19% Similarity=0.187 Sum_probs=117.3
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHHH-hcCCCCCCeEEecCcccchH--HHHHHHHhcCCCCCEEEcCCCCCCCHHH
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADGL-GRNCPRLQNIHIASIRLSHS--VVLALTAAGLRGLRMLSLVLGSEITDAS 334 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~l-~~~~~~L~~L~l~~~~i~~~--~~~~l~~~~~~~L~~L~L~~~~~i~d~~ 334 (541)
.+++|++|++++|......+ ..+ ...+++|++|++++|.+... .+..+....+++|++|+|+++ .++...
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~ 165 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAP------PPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFS 165 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCC------CCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCC
T ss_pred CcCCccEEEccCCcccchhH------HHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccch
Confidence 46788888888765432211 011 12678888888888877654 222221112378888888876 343322
Q ss_pred HHHHHhcCCCccEEEecCCCCChH-H-HHHHH-hhCCCCccEEeccCCCCCCH--HHHHHHHhcCCCcceecccCCcCCC
Q 045871 335 VAAIASTYSKLELLDLSGSSISDS-G-IGMIC-NVFPNTLSRLLLALCPNITS--SGIQFATAQLPLLELMDCGMSICDP 409 (541)
Q Consensus 335 l~~l~~~~~~L~~L~L~~~~i~~~-~-l~~l~-~~~~~~L~~L~l~~c~~l~~--~~l~~l~~~~~~L~~l~~~~~~~~~ 409 (541)
...+ ..+++|++|+|++|.+... + ...+. ..+ ++|++|+++++ .++. .....+...+++|+.|++.......
T Consensus 166 ~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l-~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 166 CEQV-RVFPALSTLDLSDNPELGERGLISALCPLKF-PTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp TTTC-CCCSSCCEEECCSCTTCHHHHHHHHSCTTSC-TTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred HHHh-ccCCCCCEEECCCCCcCcchHHHHHHHhccC-CCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 1222 3478888899988876653 2 22331 222 58888888885 5652 2233455667888888753221111
Q ss_pred CCCCCCCcccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCccHHHHHhc-CCCCCeeeccCCCCCCHhHHHhcCC
Q 045871 410 TSEDSNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCSGLDALCLN-CPELNDLNLNSCRNLRPETLLLHCP 488 (541)
Q Consensus 410 ~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~l~~~-~~~L~~L~L~~c~~~~d~~l~~~~p 488 (541)
. .... .+..+++|++|+|+++. +..+... .++|++|+|++|....... ...++
T Consensus 243 ~---~~~~---------------------~~~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N~l~~~p~-~~~l~ 296 (312)
T 1wwl_A 243 A---AGAP---------------------SCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYNRLDRNPS-PDELP 296 (312)
T ss_dssp S---CCCS---------------------CCCCCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSSCCCSCCC-TTTSC
T ss_pred c---cchh---------------------hhhhcCCCCEEECCCCc-cChhhhhccCCceEEECCCCCCCCChh-HhhCC
Confidence 0 0000 01234677777777763 1111111 1678888888886432223 56788
Q ss_pred CCcEecccCCc
Q 045871 489 RLESVHASGCQ 499 (541)
Q Consensus 489 ~L~~L~l~~C~ 499 (541)
+|+.|++++.+
T Consensus 297 ~L~~L~L~~N~ 307 (312)
T 1wwl_A 297 QVGNLSLKGNP 307 (312)
T ss_dssp EEEEEECTTCT
T ss_pred CCCEEeccCCC
Confidence 88888888865
No 78
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.00 E-value=3.9e-09 Score=95.95 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=93.9
Q ss_pred cCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHH--hcCCCCCEEEcCCCCCCCHHH
Q 045871 257 FNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTA--AGLRGLRMLSLVLGSEITDAS 334 (541)
Q Consensus 257 ~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~--~~~~~L~~L~L~~~~~i~d~~ 334 (541)
..++.|++|+|++|..+++. ++..+...+. .+++|++|+|++|.+.+++...+.. ...++|++|+|+++ .|++.+
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~-g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g 109 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVP-TLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSG 109 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHH-HHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHH
T ss_pred hcCCCCCEEEecCCCCCCHH-HHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHH
Confidence 35678888888875355553 5666677776 6788999999999998888665532 35678999999876 788888
Q ss_pred HHHHHhc---CCCccEEEe--cCCCCChHHHHHHHhhC--CCCccEEeccCCCCCCHHH
Q 045871 335 VAAIAST---YSKLELLDL--SGSSISDSGIGMICNVF--PNTLSRLLLALCPNITSSG 386 (541)
Q Consensus 335 l~~l~~~---~~~L~~L~L--~~~~i~~~~l~~l~~~~--~~~L~~L~l~~c~~l~~~~ 386 (541)
+..++.. +++|++|+| ++|.|+++|...++... .++|++|+|++| .+++.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~~ 167 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPRL 167 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChHH
Confidence 8777643 568999999 77899998877766543 257999999885 576665
No 79
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.00 E-value=6.9e-11 Score=128.41 Aligned_cols=105 Identities=11% Similarity=0.132 Sum_probs=67.3
Q ss_pred HhhCCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC----------
Q 045871 186 LQKCSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG---------- 255 (541)
Q Consensus 186 ~~~~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~---------- 255 (541)
+..+++|++|+|+++ .+..-. ......+++|++|+|+++. +..+... .+..+++|+.|.+.+
T Consensus 72 f~~l~~L~~L~Ls~N-~i~~i~-~~~f~~L~~L~~L~Ls~N~--l~~l~~~----~f~~L~~L~~L~Ls~N~l~~l~~~~ 143 (635)
T 4g8a_A 72 FFSFPELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTGNP--IQSLALG----AFSGLSSLQKLVAVETNLASLENFP 143 (635)
T ss_dssp TTTCTTCCEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTCC--CCEECGG----GGTTCTTCCEEECTTSCCCCSTTCC
T ss_pred HhCCCCCCEEECCCC-cCCCcC-hhHhcCCCCCCEEEccCCc--CCCCCHH----HhcCCCCCCEEECCCCcCCCCChhh
Confidence 456788999999985 332100 1112457899999998754 2223322 245678899998876
Q ss_pred ccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccc
Q 045871 256 IFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLS 304 (541)
Q Consensus 256 ~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~ 304 (541)
+..+++|++|+|+++....... -..+. .+++|++|++++|.+.
T Consensus 144 ~~~L~~L~~L~Ls~N~l~~~~~-----~~~~~-~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 144 IGHLKTLKELNVAHNLIQSFKL-----PEYFS-NLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CTTCTTCCEEECCSSCCCCCCC-----CGGGG-GCTTCCEEECCSSCCC
T ss_pred hhcCcccCeeccccCccccCCC-----chhhc-cchhhhhhcccCcccc
Confidence 4577899999999865432110 01122 6889999999988653
No 80
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.00 E-value=2.7e-11 Score=119.51 Aligned_cols=172 Identities=14% Similarity=0.161 Sum_probs=89.1
Q ss_pred CCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHH-HHHHhhCCCCceeeecC---------ccCC
Q 045871 190 SALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDEL-GRFVADKRCLASLKMEG---------IFNC 259 (541)
Q Consensus 190 ~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l-~~~~~~~~~L~~L~l~~---------~~~~ 259 (541)
+++++|+++++. ++. .-..+...+++|++|+|+++. ++..+. ......+++|+.|.+++ +..+
T Consensus 28 ~~l~~L~L~~n~-l~~-i~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l 100 (306)
T 2z66_A 28 SSATRLELESNK-LQS-LPHGVFDKLTQLTKLSLSSNG-----LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 100 (306)
T ss_dssp TTCCEEECCSSC-CCC-CCTTTTTTCTTCSEEECCSSC-----CCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETC
T ss_pred CCCCEEECCCCc-cCc-cCHhHhhccccCCEEECCCCc-----cCcccCcccccccccccCEEECCCCccccChhhcCCC
Confidence 478889988743 321 111123466889999998753 442110 01112356666666655 3456
Q ss_pred CCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHH
Q 045871 260 PNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIA 339 (541)
Q Consensus 260 ~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~ 339 (541)
++|++|+++++....... ...+. .+++|++|++++|.+.......+ ..+++|+.|+|.++ .+++..+....
T Consensus 101 ~~L~~L~l~~n~l~~~~~-----~~~~~-~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~~~~ 171 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSE-----FSVFL-SLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGN-SFQENFLPDIF 171 (306)
T ss_dssp TTCCEEECTTSEEESSTT-----TTTTT-TCTTCCEEECTTSCCEECSTTTT--TTCTTCCEEECTTC-EEGGGEECSCC
T ss_pred CCCCEEECCCCccccccc-----chhhh-hccCCCEEECCCCcCCccchhhc--ccCcCCCEEECCCC-ccccccchhHH
Confidence 677777776643221110 00122 56667777777665543221111 34566777777655 23221111222
Q ss_pred hcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCC
Q 045871 340 STYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALC 379 (541)
Q Consensus 340 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c 379 (541)
..+++|++|+|++|.+++.....+... ++|+.|+++++
T Consensus 172 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~N 209 (306)
T 2z66_A 172 TELRNLTFLDLSQCQLEQLSPTAFNSL--SSLQVLNMSHN 209 (306)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTC--TTCCEEECTTS
T ss_pred hhCcCCCEEECCCCCcCCcCHHHhcCC--CCCCEEECCCC
Confidence 346667777777766665433333333 46777777664
No 81
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.99 E-value=6.6e-09 Score=94.38 Aligned_cols=135 Identities=19% Similarity=0.135 Sum_probs=100.1
Q ss_pred hhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEecccCCCCCchhHHHHHHH
Q 045871 206 TMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISLEFSRQENDSTDLTTMADG 285 (541)
Q Consensus 206 ~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~ 285 (541)
+.+..+...+++|++|+|++|. .++++++..++.. +..+++|++|+|++|. +++ .+...+...
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~----~i~~~g~~~l~~~-----------L~~~~~L~~L~Ls~n~-i~~-~g~~~l~~~ 88 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIM----NIPVPTLKACAEA-----------LKTNTYVKKFSIVGTR-SND-PVAFALAEM 88 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCT----TCCHHHHHHHHHH-----------HTTCCSCCEEECTTSC-CCH-HHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEecCCC----CCCHHHHHHHHHH-----------HHhCCCcCEEECcCCC-CCh-HHHHHHHHH
Confidence 4455666677888888888652 4777777666554 2245778888888754 444 355566666
Q ss_pred HhcCCCCCCeEEecCcccchHHHHHHHH--hcCCCCCEEEc--CCCCCCCHHHHHHHHh---cCCCccEEEecCCCCChH
Q 045871 286 LGRNCPRLQNIHIASIRLSHSVVLALTA--AGLRGLRMLSL--VLGSEITDASVAAIAS---TYSKLELLDLSGSSISDS 358 (541)
Q Consensus 286 l~~~~~~L~~L~l~~~~i~~~~~~~l~~--~~~~~L~~L~L--~~~~~i~d~~l~~l~~---~~~~L~~L~L~~~~i~~~ 358 (541)
+. ..+.|++|+|++|.+.++++.++.. ...++|++|+| .+ ..|++++...++. .+++|++|+|++|.|++.
T Consensus 89 L~-~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 89 LK-VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HH-HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HH-hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 66 6788999999999999998877754 45678999999 54 4899988766654 468999999999999988
Q ss_pred H
Q 045871 359 G 359 (541)
Q Consensus 359 ~ 359 (541)
|
T Consensus 167 ~ 167 (185)
T 1io0_A 167 L 167 (185)
T ss_dssp H
T ss_pred H
Confidence 7
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.99 E-value=1.1e-09 Score=108.40 Aligned_cols=209 Identities=13% Similarity=0.103 Sum_probs=121.8
Q ss_pred cCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEecccCCCCCchhHHHHHHHHh-cCCCC
Q 045871 214 SCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISLEFSRQENDSTDLTTMADGLG-RNCPR 292 (541)
Q Consensus 214 ~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~-~~~~~ 292 (541)
.+++|++|+|+++. +++..-..++ +..+++|++|+++++..... +.. +..+. ...++
T Consensus 93 ~l~~L~~L~L~~n~-----l~~~~~~~~~-------------~~~l~~L~~L~Ls~N~l~~~-~~~---~~~l~~~~~~~ 150 (312)
T 1wwl_A 93 GISGLQELTLENLE-----VTGTAPPPLL-------------EATGPDLNILNLRNVSWATR-DAW---LAELQQWLKPG 150 (312)
T ss_dssp TTSCCCEEEEEEEB-----CBSCCCCCSS-------------SCCSCCCSEEEEESCBCSSS-SSH---HHHHHTTCCTT
T ss_pred CcCCccEEEccCCc-----ccchhHHHHH-------------HhcCCCccEEEccCCCCcch-hHH---HHHHHHhhcCC
Confidence 46899999999864 3220000000 13678999999998654433 211 22222 12478
Q ss_pred CCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHH-HH-HhcCCCccEEEecCCCCChH--HHHHHHhhCC
Q 045871 293 LQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVA-AI-ASTYSKLELLDLSGSSISDS--GIGMICNVFP 368 (541)
Q Consensus 293 L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~-~l-~~~~~~L~~L~L~~~~i~~~--~l~~l~~~~~ 368 (541)
|++|++++|.+.......+ ..+++|++|+|+++...+..++. .+ ...+++|++|+|++|.|+.. ....+...+
T Consensus 151 L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l- 227 (312)
T 1wwl_A 151 LKVLSIAQAHSLNFSCEQV--RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR- 227 (312)
T ss_dssp CCEEEEESCSCCCCCTTTC--CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT-
T ss_pred CcEEEeeCCCCccchHHHh--ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC-
Confidence 9999999998765432222 46889999999987433333332 22 15689999999999988842 233343333
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCcccccceeecccchhhcHHHHHHHHhCCCccE
Q 045871 369 NTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLKK 448 (541)
Q Consensus 369 ~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~ 448 (541)
++|+.|+++++ .++..........+++|+.|++...... . ... .+. ++|++
T Consensus 228 ~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~l~----~-ip~---------------------~~~--~~L~~ 278 (312)
T 1wwl_A 228 VQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTGLK----Q-VPK---------------------GLP--AKLSV 278 (312)
T ss_dssp CCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSCCS----S-CCS---------------------SCC--SEEEE
T ss_pred CCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCccC----h-hhh---------------------hcc--CCceE
Confidence 58999999995 4543221111123566777764321111 0 000 011 56777
Q ss_pred EEcCCCc--cHHHHHhcCCCCCeeeccCCCC
Q 045871 449 LSLWGCS--GLDALCLNCPELNDLNLNSCRN 477 (541)
Q Consensus 449 L~L~~~~--~l~~l~~~~~~L~~L~L~~c~~ 477 (541)
|+|+++. ++.. ...+++|++|+|++|..
T Consensus 279 L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 279 LDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp EECCSSCCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred EECCCCCCCCChh-HhhCCCCCEEeccCCCC
Confidence 7777663 3323 45678888888887763
No 83
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.98 E-value=2.9e-09 Score=115.00 Aligned_cols=229 Identities=15% Similarity=0.063 Sum_probs=151.6
Q ss_pred CCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC------ccCCCCcc
Q 045871 190 SALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG------IFNCPNMR 263 (541)
Q Consensus 190 ~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~------~~~~~~L~ 263 (541)
++|++|+|+++ .++. +...+++|++|+|+++. +..+.. .+++|+.|.+++ ...+++|+
T Consensus 61 ~~L~~L~L~~N-~l~~-----lp~~l~~L~~L~Ls~N~--l~~lp~--------~l~~L~~L~Ls~N~l~~l~~~l~~L~ 124 (622)
T 3g06_A 61 AHITTLVIPDN-NLTS-----LPALPPELRTLEVSGNQ--LTSLPV--------LPPGLLELSIFSNPLTHLPALPSGLC 124 (622)
T ss_dssp TTCSEEEECSC-CCSC-----CCCCCTTCCEEEECSCC--CSCCCC--------CCTTCCEEEECSCCCCCCCCCCTTCC
T ss_pred CCCcEEEecCC-CCCC-----CCCcCCCCCEEEcCCCc--CCcCCC--------CCCCCCEEECcCCcCCCCCCCCCCcC
Confidence 57999999985 3431 22356899999999864 222222 568899999876 12457899
Q ss_pred eEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCC
Q 045871 264 EISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYS 343 (541)
Q Consensus 264 ~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~ 343 (541)
+|++++|.... . ...+++|++|++++|.+..-. ..+++|+.|++.++ .++. +...++
T Consensus 125 ~L~L~~N~l~~-l----------p~~l~~L~~L~Ls~N~l~~l~------~~~~~L~~L~L~~N-~l~~-----l~~~~~ 181 (622)
T 3g06_A 125 KLWIFGNQLTS-L----------PVLPPGLQELSVSDNQLASLP------ALPSELCKLWAYNN-QLTS-----LPMLPS 181 (622)
T ss_dssp EEECCSSCCSC-C----------CCCCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSS-CCSC-----CCCCCT
T ss_pred EEECCCCCCCc-C----------CCCCCCCCEEECcCCcCCCcC------CccCCCCEEECCCC-CCCC-----CcccCC
Confidence 99998864332 1 114588999999999876521 24678999999876 3443 225578
Q ss_pred CccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCcccccce
Q 045871 344 KLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDETCDFE 423 (541)
Q Consensus 344 ~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~ 423 (541)
+|+.|+|++|.|+. +... +.+|+.|++++| .++. +...+++|+.|++....... ......+++.
T Consensus 182 ~L~~L~Ls~N~l~~-----l~~~-~~~L~~L~L~~N-~l~~-----l~~~~~~L~~L~Ls~N~L~~----lp~~l~~L~~ 245 (622)
T 3g06_A 182 GLQELSVSDNQLAS-----LPTL-PSELYKLWAYNN-RLTS-----LPALPSGLKELIVSGNRLTS----LPVLPSELKE 245 (622)
T ss_dssp TCCEEECCSSCCSC-----CCCC-CTTCCEEECCSS-CCSS-----CCCCCTTCCEEECCSSCCSC----CCCCCTTCCE
T ss_pred CCcEEECCCCCCCC-----CCCc-cchhhEEECcCC-cccc-----cCCCCCCCCEEEccCCccCc----CCCCCCcCcE
Confidence 99999999998775 1112 258999999885 4542 22345788888754321111 1122334788
Q ss_pred eecccchhhcHHHHHHHHhCCCccEEEcCCCc--cHHHHHhcCCCCCeeeccCCCCC
Q 045871 424 LQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GLDALCLNCPELNDLNLNSCRNL 478 (541)
Q Consensus 424 L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l~~l~~~~~~L~~L~L~~c~~~ 478 (541)
|+|++|. ++. +.. .+++|+.|+|++|. .+.....++++|+.|+|++|...
T Consensus 246 L~Ls~N~-L~~-lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 246 LMVSGNR-LTS-LPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp EECCSSC-CSC-CCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred EECCCCC-CCc-CCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCC
Confidence 9999874 331 111 56789999999884 33334567899999999998744
No 84
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=4e-09 Score=106.13 Aligned_cols=177 Identities=15% Similarity=0.177 Sum_probs=106.8
Q ss_pred HhhCCCccEEEecCCCC-------CChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccC
Q 045871 186 LQKCSALVRLSLTMESD-------VDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFN 258 (541)
Q Consensus 186 ~~~~~~L~~L~L~~~~~-------~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~ 258 (541)
...+++|++|.+..... ++...+..+...+|+|++|+|+++.. +. +..+ .
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~----l~-------------l~~~------~ 191 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN----LS-------------IGKK------P 191 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT----CB-------------CCSC------B
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC----ce-------------eccc------c
Confidence 34667888888865211 11123556667788899998887421 10 1111 2
Q ss_pred CCCcceEEecccCCCCCchhHHHHHHHHh-cCCCCCCeEEecCc--c-cchHHH---HHHH-HhcCCCCCEEEcCCCCCC
Q 045871 259 CPNMREISLEFSRQENDSTDLTTMADGLG-RNCPRLQNIHIASI--R-LSHSVV---LALT-AAGLRGLRMLSLVLGSEI 330 (541)
Q Consensus 259 ~~~L~~L~L~~~~~~~~~~~l~~l~~~l~-~~~~~L~~L~l~~~--~-i~~~~~---~~l~-~~~~~~L~~L~L~~~~~i 330 (541)
+++|++|+|..|.. ++. . +..+. ..+|+|++|+|..+ . ..+.++ ..++ ...+|+|++|+|..| .+
T Consensus 192 ~~~L~~L~L~~~~l-~~~-~----l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~-~i 264 (362)
T 2ra8_A 192 RPNLKSLEIISGGL-PDS-V----VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-EE 264 (362)
T ss_dssp CTTCSEEEEECSBC-CHH-H----HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC-TT
T ss_pred CCCCcEEEEecCCC-ChH-H----HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC-CC
Confidence 47788888876442 222 1 22232 25788888887531 1 111111 1111 124778888888765 56
Q ss_pred CHHHHHHHHh--cCCCccEEEecCCCCChHHHHHHHhh---CCCCccEEeccCCCCCCHHHHHHHHhcC
Q 045871 331 TDASVAAIAS--TYSKLELLDLSGSSISDSGIGMICNV---FPNTLSRLLLALCPNITSSGIQFATAQL 394 (541)
Q Consensus 331 ~d~~l~~l~~--~~~~L~~L~L~~~~i~~~~l~~l~~~---~~~~L~~L~l~~c~~l~~~~l~~l~~~~ 394 (541)
++.+...++. .+++|++|+|++|.|++.|+..+... + ++|+.|+|++| .+++.++..+...+
T Consensus 265 ~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l-~~L~~L~L~~n-~i~d~~~~~l~~al 331 (362)
T 2ra8_A 265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKI-KHLKFINMKYN-YLSDEMKKELQKSL 331 (362)
T ss_dssp HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHH-TTCSEEECCSB-BCCHHHHHHHHHHC
T ss_pred chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccC-CcceEEECCCC-cCCHHHHHHHHHHc
Confidence 6666666654 46788888888888888887777543 2 47888888876 58888887777644
No 85
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.95 E-value=2.4e-09 Score=111.67 Aligned_cols=75 Identities=13% Similarity=0.052 Sum_probs=37.1
Q ss_pred CCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCC
Q 045871 289 NCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFP 368 (541)
Q Consensus 289 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~ 368 (541)
.+++|+.|++++|.+..-. ...++|+.|+++++ .++. +.. ...+++|++|++++|.++.- ... +
T Consensus 193 ~l~~L~~L~l~~N~l~~l~------~~~~~L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~l~~N~l~~l-----~~~-~ 256 (454)
T 1jl5_A 193 NLPFLTAIYADNNSLKKLP------DLPLSLESIVAGNN-ILEE--LPE-LQNLPFLTTIYADNNLLKTL-----PDL-P 256 (454)
T ss_dssp TCTTCCEEECCSSCCSSCC------CCCTTCCEEECCSS-CCSS--CCC-CTTCTTCCEEECCSSCCSSC-----CSC-C
T ss_pred CCCCCCEEECCCCcCCcCC------CCcCcccEEECcCC-cCCc--ccc-cCCCCCCCEEECCCCcCCcc-----ccc-c
Confidence 5566666666666554310 12345666666655 2321 111 22366666666666655431 111 1
Q ss_pred CCccEEeccCC
Q 045871 369 NTLSRLLLALC 379 (541)
Q Consensus 369 ~~L~~L~l~~c 379 (541)
.+|+.|++++|
T Consensus 257 ~~L~~L~l~~N 267 (454)
T 1jl5_A 257 PSLEALNVRDN 267 (454)
T ss_dssp TTCCEEECCSS
T ss_pred cccCEEECCCC
Confidence 45666666664
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.93 E-value=7.2e-11 Score=114.50 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=29.0
Q ss_pred HhCCCccEEEcCCCc--cH-HHHHhcCCCCCeeeccCCCCCCHhHHHhcCCCCcEecccC
Q 045871 441 IKHCCLKKLSLWGCS--GL-DALCLNCPELNDLNLNSCRNLRPETLLLHCPRLESVHASG 497 (541)
Q Consensus 441 ~~~~~L~~L~L~~~~--~l-~~l~~~~~~L~~L~L~~c~~~~d~~l~~~~p~L~~L~l~~ 497 (541)
..+++|++|+|+++. ++ ......+++|+.|+|++|... ..||+|+.|+++.
T Consensus 178 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~ 231 (272)
T 3rfs_A 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWI 231 (272)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHH
T ss_pred cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHH
Confidence 445666667666663 22 122345677777777776532 3466666665554
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.91 E-value=4.9e-11 Score=115.86 Aligned_cols=200 Identities=18% Similarity=0.108 Sum_probs=98.0
Q ss_pred CCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHH
Q 045871 260 PNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIA 339 (541)
Q Consensus 260 ~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~ 339 (541)
++|++|+++++....-.. ..+. .+++|++|++++|.+.......+ ..+++|++|+|+++ .++...... .
T Consensus 28 ~~l~~L~ls~n~l~~~~~------~~~~-~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~-~ 96 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGS------YSFF-SFPELQVLDLSRCEIQTIEDGAY--QSLSHLSTLILTGN-PIQSLALGA-F 96 (276)
T ss_dssp TTCCEEECTTCCCCEECT------TTTT-TCTTCSEEECTTCCCCEECTTTT--TTCTTCCEEECTTC-CCCEECTTT-T
T ss_pred CCccEEECCCCcccccCH------hHhc-cccCCcEEECCCCcCCccCHHHc--cCCcCCCEEECCCC-ccCccChhh-h
Confidence 356777776643221110 1122 56677777777776543322112 35677777777665 333221111 2
Q ss_pred hcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCccc
Q 045871 340 STYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDET 419 (541)
Q Consensus 340 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~ 419 (541)
..+++|++|++++|.++......+... ++|++|+++++ .++...+......+++|+.|++
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~L----------------- 156 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPIGHL--KTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDL----------------- 156 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTC--TTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEEC-----------------
T ss_pred cCCccccEEECCCCCccccCchhcccC--CCCCEEECcCC-ccceecCchhhccCCCCCEEEC-----------------
Confidence 336777777777776554322223322 46777777764 3332111112234555555543
Q ss_pred ccceeecccchhhc--HHHHHHHHhCCCcc-EEEcCCCc--cHHHHHhcCCCCCeeeccCCCCCCH-hHHHhcCCCCcEe
Q 045871 420 CDFELQKAFNNKLH--LMYQKLIIKHCCLK-KLSLWGCS--GLDALCLNCPELNDLNLNSCRNLRP-ETLLLHCPRLESV 493 (541)
Q Consensus 420 ~l~~L~l~~c~~l~--~~~~~~l~~~~~L~-~L~L~~~~--~l~~l~~~~~~L~~L~L~~c~~~~d-~~l~~~~p~L~~L 493 (541)
++|.-.+ ......+..++.|. .|+++++. ++..-.....+|++|+|++|....- ..++..+++|+.|
T Consensus 157 -------s~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 157 -------SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKI 229 (276)
T ss_dssp -------CSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEE
T ss_pred -------CCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEE
Confidence 2221100 01111233333333 67776663 2211112234788888887763222 3345678888888
Q ss_pred cccC
Q 045871 494 HASG 497 (541)
Q Consensus 494 ~l~~ 497 (541)
++++
T Consensus 230 ~l~~ 233 (276)
T 2z62_A 230 WLHT 233 (276)
T ss_dssp ECCS
T ss_pred EccC
Confidence 8884
No 88
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.91 E-value=1.7e-09 Score=112.82 Aligned_cols=126 Identities=14% Similarity=0.128 Sum_probs=63.3
Q ss_pred CCCceeeecC--------ccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCC
Q 045871 246 RCLASLKMEG--------IFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLR 317 (541)
Q Consensus 246 ~~L~~L~l~~--------~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~ 317 (541)
++|+.|.+.+ +..+++|++|+++++.... .+ ...++|++|++++|.+..-. .+ ..++
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-lp----------~~~~~L~~L~L~~n~l~~l~--~~--~~l~ 195 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK-LP----------DLPPSLEFIAAGNNQLEELP--EL--QNLP 195 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC-CC----------CCCTTCCEEECCSSCCSSCC--CC--TTCT
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc-cC----------CCcccccEEECcCCcCCcCc--cc--cCCC
Confidence 3455555544 3445566666666543221 11 12346666666666554421 11 3566
Q ss_pred CCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCc
Q 045871 318 GLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLL 397 (541)
Q Consensus 318 ~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L 397 (541)
+|+.|++.++ .++. +....++|++|++++|.++. +..+... ++|+.|+++++ .++. +....+.|
T Consensus 196 ~L~~L~l~~N-~l~~-----l~~~~~~L~~L~l~~n~l~~--lp~~~~l--~~L~~L~l~~N-~l~~-----l~~~~~~L 259 (454)
T 1jl5_A 196 FLTAIYADNN-SLKK-----LPDLPLSLESIVAGNNILEE--LPELQNL--PFLTTIYADNN-LLKT-----LPDLPPSL 259 (454)
T ss_dssp TCCEEECCSS-CCSS-----CCCCCTTCCEEECCSSCCSS--CCCCTTC--TTCCEEECCSS-CCSS-----CCSCCTTC
T ss_pred CCCEEECCCC-cCCc-----CCCCcCcccEEECcCCcCCc--ccccCCC--CCCCEEECCCC-cCCc-----cccccccc
Confidence 6777777665 2221 11223467777777765552 1123322 56777777774 3332 11224566
Q ss_pred ceecc
Q 045871 398 ELMDC 402 (541)
Q Consensus 398 ~~l~~ 402 (541)
+.+++
T Consensus 260 ~~L~l 264 (454)
T 1jl5_A 260 EALNV 264 (454)
T ss_dssp CEEEC
T ss_pred CEEEC
Confidence 66654
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.90 E-value=3.2e-09 Score=104.81 Aligned_cols=158 Identities=21% Similarity=0.247 Sum_probs=74.3
Q ss_pred CCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC--------ccCCC
Q 045871 189 CSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG--------IFNCP 260 (541)
Q Consensus 189 ~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~--------~~~~~ 260 (541)
+++|++|++.++. +.+ +.. ...+++|++|+|++|. +++.. . +..+++|+.|.+++ +..++
T Consensus 40 l~~L~~L~l~~~~-i~~--l~~-~~~l~~L~~L~L~~n~-----i~~~~--~-~~~l~~L~~L~L~~n~l~~~~~~~~l~ 107 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTT--IEG-VQYLNNLIGLELKDNQ-----ITDLA--P-LKNLTKITELELSGNPLKNVSAIAGLQ 107 (308)
T ss_dssp HHTCCEEECTTSC-CCC--CTT-GGGCTTCCEEECCSSC-----CCCCG--G-GTTCCSCCEEECCSCCCSCCGGGTTCT
T ss_pred cCCcCEEEeeCCC-ccC--chh-hhccCCCCEEEccCCc-----CCCCh--h-HccCCCCCEEEccCCcCCCchhhcCCC
Confidence 3467788887743 322 111 2456788888887654 33211 1 33344444444433 33445
Q ss_pred CcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHh
Q 045871 261 NMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIAS 340 (541)
Q Consensus 261 ~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~ 340 (541)
+|++|++++|.... .. .+. .+++|++|++++|.+..... + ..+++|+.|+|+++ .+++... ..
T Consensus 108 ~L~~L~l~~n~l~~-~~-------~l~-~l~~L~~L~l~~n~l~~~~~--l--~~l~~L~~L~l~~n-~l~~~~~---l~ 170 (308)
T 1h6u_A 108 SIKTLDLTSTQITD-VT-------PLA-GLSNLQVLYLDLNQITNISP--L--AGLTNLQYLSIGNA-QVSDLTP---LA 170 (308)
T ss_dssp TCCEEECTTSCCCC-CG-------GGT-TCTTCCEEECCSSCCCCCGG--G--GGCTTCCEEECCSS-CCCCCGG---GT
T ss_pred CCCEEECCCCCCCC-ch-------hhc-CCCCCCEEECCCCccCcCcc--c--cCCCCccEEEccCC-cCCCChh---hc
Confidence 55555555533221 11 122 45555555555555443221 1 34555555555554 2332111 23
Q ss_pred cCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCC
Q 045871 341 TYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALC 379 (541)
Q Consensus 341 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c 379 (541)
.+++|++|++++|.+++... +... ++|+.|++++|
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~--l~~l--~~L~~L~L~~N 205 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISP--LASL--PNLIEVHLKNN 205 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GGGC--TTCCEEECTTS
T ss_pred CCCCCCEEECCCCccCcChh--hcCC--CCCCEEEccCC
Confidence 35555555555555543221 2222 35555555553
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.89 E-value=7.1e-10 Score=101.89 Aligned_cols=83 Identities=20% Similarity=0.336 Sum_probs=38.7
Q ss_pred CCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCC
Q 045871 289 NCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFP 368 (541)
Q Consensus 289 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~ 368 (541)
.+++|++|++++|.+.+-. .+ ..+++|++|+|.++ .+++.....+. .+++|++|++++|.+++.....+...
T Consensus 64 ~l~~L~~L~l~~n~~~~~~--~l--~~l~~L~~L~l~~n-~l~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~~l~~l-- 135 (197)
T 4ezg_A 64 YAHNIKDLTINNIHATNYN--PI--SGLSNLERLRIMGK-DVTSDKIPNLS-GLTSLTLLDISHSAHDDSILTKINTL-- 135 (197)
T ss_dssp GCTTCSEEEEESCCCSCCG--GG--TTCTTCCEEEEECT-TCBGGGSCCCT-TCTTCCEEECCSSBCBGGGHHHHTTC--
T ss_pred cCCCCCEEEccCCCCCcch--hh--hcCCCCCEEEeECC-ccCcccChhhc-CCCCCCEEEecCCccCcHhHHHHhhC--
Confidence 4556666666665443321 11 24555555555543 33332222222 24555555555555555444444433
Q ss_pred CCccEEeccCC
Q 045871 369 NTLSRLLLALC 379 (541)
Q Consensus 369 ~~L~~L~l~~c 379 (541)
++|+.|++++|
T Consensus 136 ~~L~~L~L~~n 146 (197)
T 4ezg_A 136 PKVNSIDLSYN 146 (197)
T ss_dssp SSCCEEECCSC
T ss_pred CCCCEEEccCC
Confidence 35555555554
No 91
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=3.3e-09 Score=106.77 Aligned_cols=169 Identities=17% Similarity=0.242 Sum_probs=116.6
Q ss_pred HHHHHhhCCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCC
Q 045871 182 VGSVLQKCSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPN 261 (541)
Q Consensus 182 l~~l~~~~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~ 261 (541)
+..++..+|+|++|.|+++..+. +.. ...++|++|+|..| .++.+.+..+.. ..+|+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~---l~~--~~~~~L~~L~L~~~-----~l~~~~l~~l~~-------------~~lp~ 220 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLS---IGK--KPRPNLKSLEIISG-----GLPDSVVEDILG-------------SDLPN 220 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCB---CCS--CBCTTCSEEEEECS-----BCCHHHHHHHHH-------------SBCTT
T ss_pred HHHHHhcCCCCcEEEEeCCCCce---ecc--ccCCCCcEEEEecC-----CCChHHHHHHHH-------------ccCCC
Confidence 66788888999999998853221 111 13689999999865 478877766642 25688
Q ss_pred cceEEecccCC--CCCchhHHHHHHHHh-cCCCCCCeEEecCcccchHHHHHHHH-hcCCCCCEEEcCCCCCCCHHHHHH
Q 045871 262 MREISLEFSRQ--ENDSTDLTTMADGLG-RNCPRLQNIHIASIRLSHSVVLALTA-AGLRGLRMLSLVLGSEITDASVAA 337 (541)
Q Consensus 262 L~~L~L~~~~~--~~~~~~l~~l~~~l~-~~~~~L~~L~l~~~~i~~~~~~~l~~-~~~~~L~~L~L~~~~~i~d~~l~~ 337 (541)
|++|+|+.+.. ..+. .+..+...+. ..+|+|+.|.+.+|.+.+.+...++. ..+++|++|+|+.+ .+++.+...
T Consensus 221 L~~L~L~~~~~~~~~~~-~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~ 298 (362)
T 2ra8_A 221 LEKLVLYVGVEDYGFDG-DMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARL 298 (362)
T ss_dssp CCEEEEECBCGGGTCCS-CGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHH
T ss_pred CcEEEEeccccccccch-hHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHH
Confidence 88888863211 1221 1211111122 25789999999999988877655543 24678999999764 799988887
Q ss_pred HHh---cCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccC
Q 045871 338 IAS---TYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLAL 378 (541)
Q Consensus 338 l~~---~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~ 378 (541)
+.. .+++|+.|+|++|.|++.++..+.... ...++++.
T Consensus 299 L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al---g~~~~~~~ 339 (362)
T 2ra8_A 299 LLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL---PMKIDVSD 339 (362)
T ss_dssp HHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC---CSEEECCS
T ss_pred HHhhcccCCcceEEECCCCcCCHHHHHHHHHHc---CCEEEecC
Confidence 764 378999999999999999999998753 34467766
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.89 E-value=2.1e-09 Score=98.72 Aligned_cols=148 Identities=18% Similarity=0.172 Sum_probs=97.8
Q ss_pred CCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEec
Q 045871 189 CSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISLE 268 (541)
Q Consensus 189 ~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L~ 268 (541)
+++|++|+++++ .+.+ +. -...+++|++|++++|. ++.-. .+..+++|++|+++
T Consensus 43 l~~L~~L~l~~n-~i~~--l~-~l~~l~~L~~L~l~~n~-----~~~~~-----------------~l~~l~~L~~L~l~ 96 (197)
T 4ezg_A 43 MNSLTYITLANI-NVTD--LT-GIEYAHNIKDLTINNIH-----ATNYN-----------------PISGLSNLERLRIM 96 (197)
T ss_dssp HHTCCEEEEESS-CCSC--CT-TGGGCTTCSEEEEESCC-----CSCCG-----------------GGTTCTTCCEEEEE
T ss_pred cCCccEEeccCC-CccC--hH-HHhcCCCCCEEEccCCC-----CCcch-----------------hhhcCCCCCEEEeE
Confidence 456888888874 3332 11 13567889999998763 22210 03467888888888
Q ss_pred ccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEE
Q 045871 269 FSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELL 348 (541)
Q Consensus 269 ~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L 348 (541)
+|...... ...+. .+++|++|++++|.+.+.....+ ..+++|++|+|++|..+++.. ....+++|++|
T Consensus 97 ~n~l~~~~------~~~l~-~l~~L~~L~Ls~n~i~~~~~~~l--~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L 164 (197)
T 4ezg_A 97 GKDVTSDK------IPNLS-GLTSLTLLDISHSAHDDSILTKI--NTLPKVNSIDLSYNGAITDIM---PLKTLPELKSL 164 (197)
T ss_dssp CTTCBGGG------SCCCT-TCTTCCEEECCSSBCBGGGHHHH--TTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEE
T ss_pred CCccCccc------Chhhc-CCCCCCEEEecCCccCcHhHHHH--hhCCCCCEEEccCCCCccccH---hhcCCCCCCEE
Confidence 75443211 11233 67889999999998887655544 478889999998875455532 23458889999
Q ss_pred EecCCCCChHHHHHHHhhCCCCccEEeccC
Q 045871 349 DLSGSSISDSGIGMICNVFPNTLSRLLLAL 378 (541)
Q Consensus 349 ~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~ 378 (541)
++++|.|++.. .+... ++|+.|++++
T Consensus 165 ~l~~n~i~~~~--~l~~l--~~L~~L~l~~ 190 (197)
T 4ezg_A 165 NIQFDGVHDYR--GIEDF--PKLNQLYAFS 190 (197)
T ss_dssp ECTTBCCCCCT--TGGGC--SSCCEEEECB
T ss_pred ECCCCCCcChH--HhccC--CCCCEEEeeC
Confidence 99988887632 34433 5888888887
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.87 E-value=1.9e-09 Score=105.58 Aligned_cols=101 Identities=22% Similarity=0.281 Sum_probs=63.5
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHH
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAA 337 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~ 337 (541)
.+++|++|++++|....- . .+. .+++|+.|++++|.+.+... + ..+++|+.|+|+++ .+++ +..
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-------~~~-~l~~L~~L~L~~n~l~~~~~--l--~~l~~L~~L~l~~n-~l~~--~~~ 107 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-------GIQ-YLPNVTKLFLNGNKLTDIKP--L--ANLKNLGWLFLDEN-KVKD--LSS 107 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-------TGG-GCTTCCEEECCSSCCCCCGG--G--TTCTTCCEEECCSS-CCCC--GGG
T ss_pred hcCcccEEEccCCCcccC-h-------hHh-cCCCCCEEEccCCccCCCcc--c--ccCCCCCEEECCCC-cCCC--Chh
Confidence 346777888876533221 1 133 67788888888887765432 2 46788888888776 3443 122
Q ss_pred HHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCC
Q 045871 338 IASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALC 379 (541)
Q Consensus 338 l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c 379 (541)
...+++|++|+|++|.+++. ..+... ++|+.|++++|
T Consensus 108 -l~~l~~L~~L~L~~n~i~~~--~~l~~l--~~L~~L~l~~n 144 (291)
T 1h6t_A 108 -LKDLKKLKSLSLEHNGISDI--NGLVHL--PQLESLYLGNN 144 (291)
T ss_dssp -GTTCTTCCEEECTTSCCCCC--GGGGGC--TTCCEEECCSS
T ss_pred -hccCCCCCEEECCCCcCCCC--hhhcCC--CCCCEEEccCC
Confidence 34477888888888877653 233333 57888888775
No 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.87 E-value=4.8e-10 Score=108.62 Aligned_cols=174 Identities=17% Similarity=0.180 Sum_probs=99.5
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHH
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAA 337 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~ 337 (541)
.+++|++|+++++... +.. .+. .+++|++|++++|.+.+.. .+ ..+++|++|+|.++ .+++... .
T Consensus 39 ~l~~L~~L~l~~~~i~-~~~-------~l~-~l~~L~~L~l~~n~l~~~~--~l--~~l~~L~~L~L~~n-~l~~~~~-~ 103 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIK-SVQ-------GIQ-YLPNVRYLALGGNKLHDIS--AL--KELTNLTYLILTGN-QLQSLPN-G 103 (272)
T ss_dssp HHTTCCEEECTTSCCC-CCT-------TGG-GCTTCCEEECTTSCCCCCG--GG--TTCTTCCEEECTTS-CCCCCCT-T
T ss_pred cccceeeeeeCCCCcc-ccc-------ccc-cCCCCcEEECCCCCCCCch--hh--cCCCCCCEEECCCC-ccCccCh-h
Confidence 3466777777664322 211 133 5677777777777665421 12 35667777777665 3332111 1
Q ss_pred HHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCc
Q 045871 338 IASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSD 417 (541)
Q Consensus 338 l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~ 417 (541)
....+++|++|+|++|.++......+... ++|+.|++++| .++.
T Consensus 104 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n-~l~~--------------------------------- 147 (272)
T 3rfs_A 104 VFDKLTNLKELVLVENQLQSLPDGVFDKL--TNLTYLNLAHN-QLQS--------------------------------- 147 (272)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTC--TTCCEEECCSS-CCCC---------------------------------
T ss_pred HhcCCcCCCEEECCCCcCCccCHHHhccC--CCCCEEECCCC-ccCc---------------------------------
Confidence 12336667777777766553222222222 45666666654 2221
Q ss_pred ccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cH-HHHHhcCCCCCeeeccCCCCCCH-hHHHhcCCCCcEe
Q 045871 418 ETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GL-DALCLNCPELNDLNLNSCRNLRP-ETLLLHCPRLESV 493 (541)
Q Consensus 418 ~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l-~~l~~~~~~L~~L~L~~c~~~~d-~~l~~~~p~L~~L 493 (541)
.....+..+++|+.|+|.++. ++ ......+++|++|++++|....- ...+..+++|+.|
T Consensus 148 -----------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (272)
T 3rfs_A 148 -----------------LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210 (272)
T ss_dssp -----------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred -----------------cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEE
Confidence 000113456788888888874 22 22345789999999999874332 3445789999999
Q ss_pred cccCCc
Q 045871 494 HASGCQ 499 (541)
Q Consensus 494 ~l~~C~ 499 (541)
++++++
T Consensus 211 ~l~~N~ 216 (272)
T 3rfs_A 211 WLHDNP 216 (272)
T ss_dssp ECCSSC
T ss_pred EccCCC
Confidence 999865
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.84 E-value=8.7e-10 Score=108.98 Aligned_cols=116 Identities=12% Similarity=0.056 Sum_probs=55.5
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHH
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAA 337 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~ 337 (541)
.+++|++|+|+++........+.. ..+. .+++|++|++++|.+.......+ ..+++|++|+|+++.-.++.++..
T Consensus 115 ~~~~L~~L~Ls~n~i~~~~~~~~~--~~~~-~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~ 189 (310)
T 4glp_A 115 TGLALSSLRLRNVSWATGRSWLAE--LQQW-LKPGLKVLSIAQAHSPAFSCEQV--RAFPALTSLDLSDNPGLGERGLMA 189 (310)
T ss_dssp CCBCCSSCEEESCCCSSTTSSHHH--HHTT-BCSCCCEEEEECCSSCCCCTTSC--CCCTTCCEEECCSCTTCHHHHHHT
T ss_pred cCCCCCEEEeecccccchhhhhHH--HHhh-hccCCCEEEeeCCCcchhhHHHh--ccCCCCCEEECCCCCCccchhhhH
Confidence 456666666666443322111111 1223 56666666666666543221111 345666677766653222222221
Q ss_pred H--HhcCCCccEEEecCCCCCh--HHHHHHHhhCCCCccEEeccCC
Q 045871 338 I--ASTYSKLELLDLSGSSISD--SGIGMICNVFPNTLSRLLLALC 379 (541)
Q Consensus 338 l--~~~~~~L~~L~L~~~~i~~--~~l~~l~~~~~~~L~~L~l~~c 379 (541)
. ...+++|++|+|++|.++. .....+...+ ++|++|+++++
T Consensus 190 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l-~~L~~L~Ls~N 234 (310)
T 4glp_A 190 ALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG-VQPHSLDLSHN 234 (310)
T ss_dssp TSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT-CCCSSEECTTS
T ss_pred HHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC-CCCCEEECCCC
Confidence 1 1346667777777766653 2222222222 46777777663
No 96
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.82 E-value=4.1e-10 Score=108.95 Aligned_cols=176 Identities=14% Similarity=0.169 Sum_probs=87.1
Q ss_pred CCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHH
Q 045871 260 PNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIA 339 (541)
Q Consensus 260 ~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~ 339 (541)
++|++|+|+++....-.. ..+. .+++|++|+++++.+..-....+ ..+++|++|+|.++ .++.... ...
T Consensus 37 ~~l~~L~l~~n~l~~~~~------~~~~-~l~~L~~L~l~~n~l~~i~~~~~--~~l~~L~~L~l~~n-~l~~~~~-~~~ 105 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPS------KAFH-RLTKLRLLYLNDNKLQTLPAGIF--KELKNLETLWVTDN-KLQALPI-GVF 105 (270)
T ss_dssp TTCSEEECCSSCCSCCCT------TSSS-SCTTCCEEECCSSCCSCCCTTTT--SSCTTCCEEECCSS-CCCCCCT-TTT
T ss_pred CCCCEEECcCCCCCeeCH------HHhc-CCCCCCEEECCCCccCeeChhhh--cCCCCCCEEECCCC-cCCcCCH-hHc
Confidence 457777776643222110 1122 56777777777776543211111 34666777777654 2322111 122
Q ss_pred hcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCccc
Q 045871 340 STYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDET 419 (541)
Q Consensus 340 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~ 419 (541)
..+++|++|+|++|.++......+... ++|++|+++++ .++...
T Consensus 106 ~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n-~l~~~~--------------------------------- 149 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQLKSLPPRVFDSL--TKLTYLSLGYN-ELQSLP--------------------------------- 149 (270)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTTTTTC--TTCCEEECCSS-CCCCCC---------------------------------
T ss_pred ccccCCCEEECCCCccCeeCHHHhCcC--cCCCEEECCCC-cCCccC---------------------------------
Confidence 336667777776665554332222222 45666666653 222100
Q ss_pred ccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cHH-HHHhcCCCCCeeeccCCCCCCH-hHHHhcCCCCcEecc
Q 045871 420 CDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GLD-ALCLNCPELNDLNLNSCRNLRP-ETLLLHCPRLESVHA 495 (541)
Q Consensus 420 ~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l~-~l~~~~~~L~~L~L~~c~~~~d-~~l~~~~p~L~~L~l 495 (541)
...+..+++|++|+|.++. .+. ..+..+++|++|+|++|....- ...+..+++|+.|+|
T Consensus 150 -----------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 150 -----------------KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp -----------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred -----------------HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 0013345566666666552 221 1234567777777777653221 233456777777777
Q ss_pred cCCc
Q 045871 496 SGCQ 499 (541)
Q Consensus 496 ~~C~ 499 (541)
++++
T Consensus 213 ~~N~ 216 (270)
T 2o6q_A 213 QENP 216 (270)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 7654
No 97
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.80 E-value=3.3e-10 Score=109.93 Aligned_cols=202 Identities=17% Similarity=0.214 Sum_probs=116.8
Q ss_pred CCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCe
Q 045871 216 PNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQN 295 (541)
Q Consensus 216 ~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~ 295 (541)
++|++|+|+++. ++. +.-..+..+++|++|++++|....-.. ..+. .+++|++
T Consensus 28 ~~l~~L~ls~n~-----l~~---------------~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~-~l~~L~~ 80 (276)
T 2z62_A 28 FSTKNLDLSFNP-----LRH---------------LGSYSFFSFPELQVLDLSRCEIQTIED------GAYQ-SLSHLST 80 (276)
T ss_dssp TTCCEEECTTCC-----CCE---------------ECTTTTTTCTTCSEEECTTCCCCEECT------TTTT-TCTTCCE
T ss_pred CCccEEECCCCc-----ccc---------------cCHhHhccccCCcEEECCCCcCCccCH------HHcc-CCcCCCE
Confidence 579999998754 322 111113467888888888763322110 1122 6889999
Q ss_pred EEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHH-HHHHhhCCCCccEE
Q 045871 296 IHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGI-GMICNVFPNTLSRL 374 (541)
Q Consensus 296 L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l-~~l~~~~~~~L~~L 374 (541)
|++++|.+.......+ ..+++|++|++.++ .++...... ...+++|++|++++|.++...+ ..+... ++|++|
T Consensus 81 L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~l~~~~~~l--~~L~~L 154 (276)
T 2z62_A 81 LILTGNPIQSLALGAF--SGLSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNL--TNLEHL 154 (276)
T ss_dssp EECTTCCCCEECTTTT--TTCTTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGC--TTCCEE
T ss_pred EECCCCccCccChhhh--cCCccccEEECCCC-CccccCchh-cccCCCCCEEECcCCccceecCchhhccC--CCCCEE
Confidence 9999997765432222 46889999999876 333211111 3348899999999998776432 234433 689999
Q ss_pred eccCCCCCCH---HHHHHHHhcCCCcc-eecccCCcCCCCCCCCCCcccccceeecccchhhcHHHHHHHHhCCCccEEE
Q 045871 375 LLALCPNITS---SGIQFATAQLPLLE-LMDCGMSICDPTSEDSNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLS 450 (541)
Q Consensus 375 ~l~~c~~l~~---~~l~~l~~~~~~L~-~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~ 450 (541)
+++++ .++. ..+..+. .++.|. .+++ +++.- .+... ......+|+.|+
T Consensus 155 ~Ls~N-~l~~~~~~~~~~l~-~L~~l~l~L~l------------------------s~n~l-~~~~~-~~~~~~~L~~L~ 206 (276)
T 2z62_A 155 DLSSN-KIQSIYCTDLRVLH-QMPLLNLSLDL------------------------SLNPM-NFIQP-GAFKEIRLKELA 206 (276)
T ss_dssp ECCSS-CCCEECGGGGHHHH-TCTTCCEEEEC------------------------CSSCC-CEECT-TSSCSCCEEEEE
T ss_pred ECCCC-CCCcCCHHHhhhhh-hccccceeeec------------------------CCCcc-cccCc-cccCCCcccEEE
Confidence 99986 4543 2232222 233333 3432 22110 00000 011234788888
Q ss_pred cCCCc--cH-HHHHhcCCCCCeeeccCCCCC
Q 045871 451 LWGCS--GL-DALCLNCPELNDLNLNSCRNL 478 (541)
Q Consensus 451 L~~~~--~l-~~l~~~~~~L~~L~L~~c~~~ 478 (541)
|+++. .+ ..++..+++|++|+|++|...
T Consensus 207 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCCCceeecCHhHhcccccccEEEccCCccc
Confidence 88774 22 233456899999999988743
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.79 E-value=2.6e-09 Score=115.07 Aligned_cols=101 Identities=22% Similarity=0.275 Sum_probs=63.5
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHH
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAA 337 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~ 337 (541)
.+++|+.|+++++.... .. .+. .+++|+.|+|++|.+.+... + ..+++|+.|+|+++ .+++. ..
T Consensus 41 ~L~~L~~L~l~~n~i~~-l~-------~l~-~l~~L~~L~Ls~N~l~~~~~--l--~~l~~L~~L~Ls~N-~l~~l--~~ 104 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKS-VQ-------GIQ-YLPNVTKLFLNGNKLTDIKP--L--TNLKNLGWLFLDEN-KIKDL--SS 104 (605)
T ss_dssp HHTTCCCCBCTTCCCCC-CT-------TGG-GCTTCCEEECTTSCCCCCGG--G--GGCTTCCEEECCSS-CCCCC--TT
T ss_pred cCCCCCEEECcCCCCCC-Ch-------HHc-cCCCCCEEEeeCCCCCCChh--h--ccCCCCCEEECcCC-CCCCC--hh
Confidence 34667777777644322 11 133 67888888888887665432 2 57888888888876 34331 12
Q ss_pred HHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCC
Q 045871 338 IASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALC 379 (541)
Q Consensus 338 l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c 379 (541)
...+++|++|+|++|.|++. ..+... ++|+.|+|++|
T Consensus 105 -l~~l~~L~~L~Ls~N~l~~l--~~l~~l--~~L~~L~Ls~N 141 (605)
T 1m9s_A 105 -LKDLKKLKSLSLEHNGISDI--NGLVHL--PQLESLYLGNN 141 (605)
T ss_dssp -STTCTTCCEEECTTSCCCCC--GGGGGC--TTCSEEECCSS
T ss_pred -hccCCCCCEEEecCCCCCCC--ccccCC--CccCEEECCCC
Confidence 23477888888888877652 233333 57888888875
No 99
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.78 E-value=1.2e-09 Score=105.55 Aligned_cols=150 Identities=13% Similarity=0.182 Sum_probs=93.6
Q ss_pred CccEEEecCCCCCChhhHHHHhhc-CCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEecc
Q 045871 191 ALVRLSLTMESDVDATMLACIAFS-CPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISLEF 269 (541)
Q Consensus 191 ~L~~L~L~~~~~~~~~~L~~l~~~-~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~ 269 (541)
+++.+++++ ..++. +... .++|++|+|+++. ++. +.-..+..+++|++|++++
T Consensus 17 ~~~~l~~~~-~~l~~-----ip~~~~~~l~~L~l~~n~-----l~~---------------~~~~~~~~l~~L~~L~l~~ 70 (270)
T 2o6q_A 17 NKNSVDCSS-KKLTA-----IPSNIPADTKKLDLQSNK-----LSS---------------LPSKAFHRLTKLRLLYLND 70 (270)
T ss_dssp TTTEEECTT-SCCSS-----CCSCCCTTCSEEECCSSC-----CSC---------------CCTTSSSSCTTCCEEECCS
T ss_pred CCCEEEccC-CCCCc-----cCCCCCCCCCEEECcCCC-----CCe---------------eCHHHhcCCCCCCEEECCC
Confidence 466777776 23321 2222 2679999998754 221 1111144678999999987
Q ss_pred cCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEE
Q 045871 270 SRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLD 349 (541)
Q Consensus 270 ~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~ 349 (541)
+....-. ..+...+++|++|++++|.+.......+ ..+++|++|+|.++ .++..... ....+++|++|+
T Consensus 71 n~l~~i~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~ 139 (270)
T 2o6q_A 71 NKLQTLP-------AGIFKELKNLETLWVTDNKLQALPIGVF--DQLVNLAELRLDRN-QLKSLPPR-VFDSLTKLTYLS 139 (270)
T ss_dssp SCCSCCC-------TTTTSSCTTCCEEECCSSCCCCCCTTTT--TTCSSCCEEECCSS-CCCCCCTT-TTTTCTTCCEEE
T ss_pred CccCeeC-------hhhhcCCCCCCEEECCCCcCCcCCHhHc--ccccCCCEEECCCC-ccCeeCHH-HhCcCcCCCEEE
Confidence 5433211 1233378899999999998765332222 46889999999886 33322111 224589999999
Q ss_pred ecCCCCChHHHHHHHhhCCCCccEEeccCC
Q 045871 350 LSGSSISDSGIGMICNVFPNTLSRLLLALC 379 (541)
Q Consensus 350 L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c 379 (541)
|++|.|+......+... ++|+.|+++++
T Consensus 140 Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n 167 (270)
T 2o6q_A 140 LGYNELQSLPKGVFDKL--TSLKELRLYNN 167 (270)
T ss_dssp CCSSCCCCCCTTTTTTC--TTCCEEECCSS
T ss_pred CCCCcCCccCHhHccCC--cccceeEecCC
Confidence 99998776433333333 68999999885
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.75 E-value=1.5e-08 Score=99.16 Aligned_cols=164 Identities=20% Similarity=0.235 Sum_probs=91.5
Q ss_pred CCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEec
Q 045871 189 CSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISLE 268 (541)
Q Consensus 189 ~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L~ 268 (541)
+++|++|+++++. +.+- .. ...+++|++|+++++. +++.. . +..+++|++|+++
T Consensus 45 l~~L~~L~l~~~~-i~~~--~~-~~~l~~L~~L~L~~n~-----l~~~~--~---------------l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 45 LNSIDQIIANNSD-IKSV--QG-IQYLPNVTKLFLNGNK-----LTDIK--P---------------LANLKNLGWLFLD 98 (291)
T ss_dssp HHTCCEEECTTSC-CCCC--TT-GGGCTTCCEEECCSSC-----CCCCG--G---------------GTTCTTCCEEECC
T ss_pred cCcccEEEccCCC-cccC--hh-HhcCCCCCEEEccCCc-----cCCCc--c---------------cccCCCCCEEECC
Confidence 4568888888753 3221 11 3457888888888754 33211 0 2245666777776
Q ss_pred ccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEE
Q 045871 269 FSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELL 348 (541)
Q Consensus 269 ~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L 348 (541)
+|.. .+.. .+. .+++|++|++++|.+.+-. .+ ..+++|+.|+|+++ .+++. . ....+++|++|
T Consensus 99 ~n~l-~~~~-------~l~-~l~~L~~L~L~~n~i~~~~--~l--~~l~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L 161 (291)
T 1h6t_A 99 ENKV-KDLS-------SLK-DLKKLKSLSLEHNGISDIN--GL--VHLPQLESLYLGNN-KITDI--T-VLSRLTKLDTL 161 (291)
T ss_dssp SSCC-CCGG-------GGT-TCTTCCEEECTTSCCCCCG--GG--GGCTTCCEEECCSS-CCCCC--G-GGGGCTTCSEE
T ss_pred CCcC-CCCh-------hhc-cCCCCCEEECCCCcCCCCh--hh--cCCCCCCEEEccCC-cCCcc--h-hhccCCCCCEE
Confidence 6432 2211 123 6677777777777665531 11 45677777777765 33332 1 23346777777
Q ss_pred EecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeccc
Q 045871 349 DLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCG 403 (541)
Q Consensus 349 ~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~ 403 (541)
+|++|.|++... +... ++|+.|+++++ .+++. .. ...+++|+.|++.
T Consensus 162 ~L~~N~l~~~~~--l~~l--~~L~~L~L~~N-~i~~l--~~-l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 162 SLEDNQISDIVP--LAGL--TKLQNLYLSKN-HISDL--RA-LAGLKNLDVLELF 208 (291)
T ss_dssp ECCSSCCCCCGG--GTTC--TTCCEEECCSS-CCCBC--GG-GTTCTTCSEEEEE
T ss_pred EccCCccccchh--hcCC--CccCEEECCCC-cCCCC--hh-hccCCCCCEEECc
Confidence 777776665332 3322 56777777774 45432 11 2446777777643
No 101
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.73 E-value=1.4e-09 Score=106.42 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=38.8
Q ss_pred CCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCC
Q 045871 289 NCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFP 368 (541)
Q Consensus 289 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~ 368 (541)
.+++|+.|++++|.+...... ..+++|+.|+|+++ .++. +......+++|++|+|++|.|+......+...
T Consensus 53 ~l~~L~~L~L~~n~l~~~~~~----~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l-- 123 (290)
T 1p9a_G 53 PYTRLTQLNLDRAELTKLQVD----GTLPVLGTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-- 123 (290)
T ss_dssp TCTTCCEEECTTSCCCEEECC----SCCTTCCEEECCSS-CCSS--CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC--
T ss_pred cCCCCCEEECCCCccCcccCC----CCCCcCCEEECCCC-cCCc--CchhhccCCCCCEEECCCCcCcccCHHHHcCC--
Confidence 556666666666655432211 24556666666554 2321 11112335566666666665543222222222
Q ss_pred CCccEEeccC
Q 045871 369 NTLSRLLLAL 378 (541)
Q Consensus 369 ~~L~~L~l~~ 378 (541)
++|+.|++++
T Consensus 124 ~~L~~L~L~~ 133 (290)
T 1p9a_G 124 GELQELYLKG 133 (290)
T ss_dssp TTCCEEECTT
T ss_pred CCCCEEECCC
Confidence 3555555555
No 102
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.72 E-value=6e-09 Score=73.47 Aligned_cols=42 Identities=31% Similarity=0.641 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhh--HHHHhhcc
Q 045871 126 GGLPAAALWEVLRRLPPPGLLAAAQVCKGWRETS--RRLWRAAE 167 (541)
Q Consensus 126 ~~LP~eil~~If~~L~~~~l~~~~~Vck~W~~~~--~~~~~~i~ 167 (541)
..||+||+.+||+||+.+|++++++|||+|+.++ +.+|+.++
T Consensus 10 ~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~ld 53 (53)
T 1fs1_A 10 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD 53 (53)
T ss_dssp CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC----
T ss_pred HHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhcC
Confidence 4469999999999999999999999999999999 78998764
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.71 E-value=1.8e-08 Score=108.60 Aligned_cols=103 Identities=25% Similarity=0.311 Sum_probs=63.0
Q ss_pred ccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHH
Q 045871 256 IFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASV 335 (541)
Q Consensus 256 ~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l 335 (541)
+..+++|++|+|++|....- . .+. .+++|+.|+|++|.+... ..+ ..+++|+.|+|+++ .+++...
T Consensus 105 l~~l~~L~~L~Ls~N~l~~l-~-------~l~-~l~~L~~L~Ls~N~l~~l--~~l--~~l~~L~~L~Ls~N-~l~~~~~ 170 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNGISDI-N-------GLV-HLPQLESLYLGNNKITDI--TVL--SRLTKLDTLSLEDN-QISDIVP 170 (605)
T ss_dssp STTCTTCCEEECTTSCCCCC-G-------GGG-GCTTCSEEECCSSCCCCC--GGG--GSCTTCSEEECCSS-CCCCCGG
T ss_pred hccCCCCCEEEecCCCCCCC-c-------ccc-CCCccCEEECCCCccCCc--hhh--cccCCCCEEECcCC-cCCCchh
Confidence 34567777777776543321 1 133 677788888887776654 112 46777888887766 3443211
Q ss_pred HHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCC
Q 045871 336 AAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALC 379 (541)
Q Consensus 336 ~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c 379 (541)
...+++|++|+|++|.|++. ..+... ++|+.|+|++|
T Consensus 171 ---l~~l~~L~~L~Ls~N~i~~l--~~l~~l--~~L~~L~L~~N 207 (605)
T 1m9s_A 171 ---LAGLTKLQNLYLSKNHISDL--RALAGL--KNLDVLELFSQ 207 (605)
T ss_dssp ---GTTCTTCCEEECCSSCCCBC--GGGTTC--TTCSEEECCSE
T ss_pred ---hccCCCCCEEECcCCCCCCC--hHHccC--CCCCEEEccCC
Confidence 34477788888887777663 233333 57788887775
No 104
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.68 E-value=1.6e-09 Score=102.78 Aligned_cols=55 Identities=9% Similarity=-0.066 Sum_probs=31.4
Q ss_pred CCccEEEcCCCc---cH-HHHHhcC-CCCCeeeccCCCCCCHhHHHhcCCCCcEecccCCcc
Q 045871 444 CCLKKLSLWGCS---GL-DALCLNC-PELNDLNLNSCRNLRPETLLLHCPRLESVHASGCQE 500 (541)
Q Consensus 444 ~~L~~L~L~~~~---~l-~~l~~~~-~~L~~L~L~~c~~~~d~~l~~~~p~L~~L~l~~C~~ 500 (541)
++|++|+|.++. .+ ...+..+ ++|++|+|++|...+-.. ..+++|+.|++.++..
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~--~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS--KGLEHLKELIARNTWT 238 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC--TTCTTCSEEECTTC--
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh--hHhccCceeeccCccC
Confidence 456666666653 22 1223456 778888888766321111 2577888888887753
No 105
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.59 E-value=3.2e-10 Score=107.56 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=41.4
Q ss_pred HHhCCCcc-EEEcCCCc--cHHH-HHhcCCCCCeeeccCCCCCCH--hHHHhcC-CCCcEecccCCc
Q 045871 440 IIKHCCLK-KLSLWGCS--GLDA-LCLNCPELNDLNLNSCRNLRP--ETLLLHC-PRLESVHASGCQ 499 (541)
Q Consensus 440 l~~~~~L~-~L~L~~~~--~l~~-l~~~~~~L~~L~L~~c~~~~d--~~l~~~~-p~L~~L~l~~C~ 499 (541)
+..+++|+ +|+|+++. .+.. ... .++|++|+|++|..++. ...+..+ ++|+.|+++++.
T Consensus 151 ~~~l~~L~~~L~l~~n~l~~i~~~~~~-~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNNGFTSVQGYAFN-GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp TTTTBSSEEEEECCSCCCCEECTTTTT-TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred ccchhcceeEEEcCCCCCcccCHhhcC-CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 45677888 88887763 2221 222 37899999999965544 3445677 999999999965
No 106
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.58 E-value=1.4e-06 Score=78.98 Aligned_cols=113 Identities=12% Similarity=0.173 Sum_probs=84.2
Q ss_pred hHHHHHHHHhcCCCCCCeEEecCc-ccchHHHHHHHH--hcCCCCCEEEcCCCCCCCHHHHHHHHh---cCCCccEEEec
Q 045871 278 DLTTMADGLGRNCPRLQNIHIASI-RLSHSVVLALTA--AGLRGLRMLSLVLGSEITDASVAAIAS---TYSKLELLDLS 351 (541)
Q Consensus 278 ~l~~l~~~l~~~~~~L~~L~l~~~-~i~~~~~~~l~~--~~~~~L~~L~L~~~~~i~d~~l~~l~~---~~~~L~~L~L~ 351 (541)
++...+..+....+.|++|+|+++ .+.++++.++.. ..-..|+.|+|.++ .|+|.+..+|+. ..+.|++|+|+
T Consensus 28 ~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~ 106 (197)
T 1pgv_A 28 DVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVE 106 (197)
T ss_dssp CHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred CHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecC
Confidence 344434555557788999999985 888888776653 34457999999876 789988776654 35789999999
Q ss_pred CCCCChHHHHHHHhhC--CCCccEEeccCCC--CCCHHHHHHHH
Q 045871 352 GSSISDSGIGMICNVF--PNTLSRLLLALCP--NITSSGIQFAT 391 (541)
Q Consensus 352 ~~~i~~~~l~~l~~~~--~~~L~~L~l~~c~--~l~~~~l~~l~ 391 (541)
+|.|++.|...|+... ...|++|+|+++. .+++.+...++
T Consensus 107 ~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia 150 (197)
T 1pgv_A 107 SNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 150 (197)
T ss_dssp SSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH
Confidence 9999999999888775 3579999998753 56776655554
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.55 E-value=5.9e-09 Score=99.58 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=15.6
Q ss_pred CCCCCeeeccCCCCCCH-hHHHhcCCCCcEecccCCc
Q 045871 464 CPELNDLNLNSCRNLRP-ETLLLHCPRLESVHASGCQ 499 (541)
Q Consensus 464 ~~~L~~L~L~~c~~~~d-~~l~~~~p~L~~L~l~~C~ 499 (541)
+++|++|+|++|....- ...+..+++|+.|+|++++
T Consensus 154 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 44455555544432111 1123345555555555543
No 108
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.55 E-value=4.3e-08 Score=85.39 Aligned_cols=106 Identities=17% Similarity=0.123 Sum_probs=55.1
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHH
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAA 337 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~ 337 (541)
.+++|++|++++|....- ..+. .+++|+.|++++|.+.... ...+ ..+++|+.|+++++ .+++.....
T Consensus 40 ~l~~L~~L~l~~n~l~~~--------~~~~-~l~~L~~L~Ls~n~i~~~~-~~~~-~~l~~L~~L~ls~N-~i~~~~~~~ 107 (149)
T 2je0_A 40 EFEELEFLSTINVGLTSI--------ANLP-KLNKLKKLELSDNRVSGGL-EVLA-EKCPNLTHLNLSGN-KIKDLSTIE 107 (149)
T ss_dssp TCTTCCEEECTTSCCCCC--------TTCC-CCTTCCEEECCSSCCCSCT-HHHH-HHCTTCCEEECTTS-CCCSHHHHG
T ss_pred hcCCCcEEECcCCCCCCc--------hhhh-cCCCCCEEECCCCcccchH-HHHh-hhCCCCCEEECCCC-cCCChHHHH
Confidence 456677777766432221 1122 5667777777777665531 1111 24666777777665 355432222
Q ss_pred HHhcCCCccEEEecCCCCChHHH---HHHHhhCCCCccEEecc
Q 045871 338 IASTYSKLELLDLSGSSISDSGI---GMICNVFPNTLSRLLLA 377 (541)
Q Consensus 338 l~~~~~~L~~L~L~~~~i~~~~l---~~l~~~~~~~L~~L~l~ 377 (541)
....+++|++|++++|.+++... ..+... ++|+.|+++
T Consensus 108 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l--~~L~~L~l~ 148 (149)
T 2je0_A 108 PLKKLENLKSLDLFNCEVTNLNDYRENVFKLL--PQLTYLDGY 148 (149)
T ss_dssp GGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC--TTCCEETTB
T ss_pred HHhhCCCCCEEeCcCCcccchHHHHHHHHHHC--CCcccccCC
Confidence 23346667777776665554332 223322 456666654
No 109
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.54 E-value=7.5e-09 Score=101.18 Aligned_cols=149 Identities=12% Similarity=0.178 Sum_probs=85.9
Q ss_pred CCCccEEEecCCCCCChhhHHHHhh-cCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEe
Q 045871 189 CSALVRLSLTMESDVDATMLACIAF-SCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISL 267 (541)
Q Consensus 189 ~~~L~~L~L~~~~~~~~~~L~~l~~-~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L 267 (541)
+++++++++.+. .++ .+.. ..++|+.|+|+++. ++. +....+..+++|++|+|
T Consensus 9 l~~l~~l~~~~~-~l~-----~ip~~~~~~l~~L~L~~N~-----l~~---------------~~~~~~~~l~~L~~L~L 62 (290)
T 1p9a_G 9 VASHLEVNCDKR-NLT-----ALPPDLPKDTTILHLSENL-----LYT---------------FSLATLMPYTRLTQLNL 62 (290)
T ss_dssp STTCCEEECTTS-CCS-----SCCSCCCTTCCEEECTTSC-----CSE---------------EEGGGGTTCTTCCEEEC
T ss_pred cCCccEEECCCC-CCC-----cCCCCCCCCCCEEEcCCCc-----CCc---------------cCHHHhhcCCCCCEEEC
Confidence 456778877762 332 1111 22688888888643 322 11111345677778887
Q ss_pred cccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccE
Q 045871 268 EFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLEL 347 (541)
Q Consensus 268 ~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~ 347 (541)
+++... .... . ..+++|+.|++++|.+..-. ..+ ..+++|+.|+|+++ .++.... .....+++|++
T Consensus 63 ~~n~l~-~~~~-------~-~~l~~L~~L~Ls~N~l~~l~--~~~-~~l~~L~~L~l~~N-~l~~l~~-~~~~~l~~L~~ 128 (290)
T 1p9a_G 63 DRAELT-KLQV-------D-GTLPVLGTLDLSHNQLQSLP--LLG-QTLPALTVLDVSFN-RLTSLPL-GALRGLGELQE 128 (290)
T ss_dssp TTSCCC-EEEC-------C-SCCTTCCEEECCSSCCSSCC--CCT-TTCTTCCEEECCSS-CCCCCCS-STTTTCTTCCE
T ss_pred CCCccC-cccC-------C-CCCCcCCEEECCCCcCCcCc--hhh-ccCCCCCEEECCCC-cCcccCH-HHHcCCCCCCE
Confidence 764322 2110 1 26778888888888765321 111 46788888888876 3432111 12234788999
Q ss_pred EEecCCCCChHHHHHHHhhCCCCccEEeccCC
Q 045871 348 LDLSGSSISDSGIGMICNVFPNTLSRLLLALC 379 (541)
Q Consensus 348 L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c 379 (541)
|+|++|.|+......+... ++|+.|+++++
T Consensus 129 L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~N 158 (290)
T 1p9a_G 129 LYLKGNELKTLPPGLLTPT--PKLEKLSLANN 158 (290)
T ss_dssp EECTTSCCCCCCTTTTTTC--TTCCEEECTTS
T ss_pred EECCCCCCCccChhhcccc--cCCCEEECCCC
Confidence 9998887765332223333 57888888874
No 110
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.51 E-value=1.2e-08 Score=110.63 Aligned_cols=128 Identities=13% Similarity=0.020 Sum_probs=72.4
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCc-CCCCCCCCCCcccccceeecccchhhcHHHHHHHHhCCCcc
Q 045871 369 NTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSI-CDPTSEDSNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLK 447 (541)
Q Consensus 369 ~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~-~~~~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~ 447 (541)
.+++.++++.+ .+... .......++.|+.+++.... ..............+++|+|++|. +.+.....+.++++|+
T Consensus 445 ~~l~~l~ls~n-~l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 445 RNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQ 521 (635)
T ss_dssp TTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCC
T ss_pred ccccccccccc-ccccc-cccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChHHHcCCCCCC
Confidence 45666666653 22110 01122346667777642211 000011111222346888888874 4434444577889999
Q ss_pred EEEcCCCc--cHH-HHHhcCCCCCeeeccCCCCCCH-hHHHhcC-CCCcEecccCCc
Q 045871 448 KLSLWGCS--GLD-ALCLNCPELNDLNLNSCRNLRP-ETLLLHC-PRLESVHASGCQ 499 (541)
Q Consensus 448 ~L~L~~~~--~l~-~l~~~~~~L~~L~L~~c~~~~d-~~l~~~~-p~L~~L~l~~C~ 499 (541)
+|+|+++. ++. ..+..+++|+.|+|++|...+- ...+..+ ++|+.|+|++++
T Consensus 522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 99999884 332 3346789999999998874322 2233444 689999998644
No 111
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.46 E-value=1.4e-06 Score=78.85 Aligned_cols=118 Identities=11% Similarity=0.180 Sum_probs=94.1
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHH--hcCCCCCEEEcCCCCCCCHHHH
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTA--AGLRGLRMLSLVLGSEITDASV 335 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~--~~~~~L~~L~L~~~~~i~d~~l 335 (541)
.-+.|++|+|+++..+++ .+...+.+++. ....|+.|+|++|.+.+.+..++.. ..-..|++|+|.++ .|++.++
T Consensus 39 ~n~~L~~L~L~~nn~igd-~ga~~la~aL~-~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga 115 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSK-ERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELL 115 (197)
T ss_dssp TCSSCCEEECTTCCSSCH-HHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred cCCCccEEECCCCCCCCH-HHHHHHHHHHh-hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHH
Confidence 457788999986546666 47888888888 6778999999999999998765542 45678999999876 8999999
Q ss_pred HHHHhcC---CCccEEEecCC---CCChHHHHHHHhhC--CCCccEEeccC
Q 045871 336 AAIASTY---SKLELLDLSGS---SISDSGIGMICNVF--PNTLSRLLLAL 378 (541)
Q Consensus 336 ~~l~~~~---~~L~~L~L~~~---~i~~~~l~~l~~~~--~~~L~~L~l~~ 378 (541)
.+++..+ ..|++|+|+++ .+++.|...|+... .+.|+.|+++.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 9988654 57999999865 68998877666543 26899999976
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.46 E-value=7.1e-08 Score=85.83 Aligned_cols=109 Identities=18% Similarity=0.130 Sum_probs=58.1
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHH
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAA 337 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~ 337 (541)
.+++|++|++++|....- . .+. .+++|++|++++|.+.... ...+ ..+++|+.|+|+++ .+++.....
T Consensus 47 ~l~~L~~L~l~~n~l~~~-~-------~~~-~l~~L~~L~Ls~N~l~~~~-~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~ 114 (168)
T 2ell_A 47 EFVNLEFLSLINVGLISV-S-------NLP-KLPKLKKLELSENRIFGGL-DMLA-EKLPNLTHLNLSGN-KLKDISTLE 114 (168)
T ss_dssp GGGGCCEEEEESSCCCCC-S-------SCC-CCSSCCEEEEESCCCCSCC-CHHH-HHCTTCCEEECBSS-SCCSSGGGG
T ss_pred hCCCCCEEeCcCCCCCCh-h-------hhc-cCCCCCEEECcCCcCchHH-HHHH-hhCCCCCEEeccCC-ccCcchhHH
Confidence 445666666665432211 1 122 5666777777777665421 1111 34677777777665 444421112
Q ss_pred HHhcCCCccEEEecCCCCChHHH---HHHHhhCCCCccEEeccCCC
Q 045871 338 IASTYSKLELLDLSGSSISDSGI---GMICNVFPNTLSRLLLALCP 380 (541)
Q Consensus 338 l~~~~~~L~~L~L~~~~i~~~~l---~~l~~~~~~~L~~L~l~~c~ 380 (541)
....+++|++|++++|.++.... ..+.. + ++|+.|++++|.
T Consensus 115 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-l-~~L~~L~l~~n~ 158 (168)
T 2ell_A 115 PLKKLECLKSLDLFNCEVTNLNDYRESVFKL-L-PQLTYLDGYDRE 158 (168)
T ss_dssp GGSSCSCCCEEECCSSGGGTSTTHHHHHHTT-C-SSCCEETTEETT
T ss_pred HHhcCCCCCEEEeeCCcCcchHHHHHHHHHh-C-ccCcEecCCCCC
Confidence 22347777777777776655332 22332 3 577777777763
No 113
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.44 E-value=7.8e-08 Score=83.72 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=7.8
Q ss_pred CCCCCCeEEecCcccc
Q 045871 289 NCPRLQNIHIASIRLS 304 (541)
Q Consensus 289 ~~~~L~~L~l~~~~i~ 304 (541)
.+++|+.|++++|.+.
T Consensus 40 ~l~~L~~L~l~~n~l~ 55 (149)
T 2je0_A 40 EFEELEFLSTINVGLT 55 (149)
T ss_dssp TCTTCCEEECTTSCCC
T ss_pred hcCCCcEEECcCCCCC
Confidence 3445555555555443
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.44 E-value=2.1e-08 Score=89.35 Aligned_cols=84 Identities=20% Similarity=0.261 Sum_probs=39.2
Q ss_pred CCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCC
Q 045871 289 NCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFP 368 (541)
Q Consensus 289 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~ 368 (541)
..++|++|++++|.+.+..+...+ ..+++|+.|+|.++ .+++. .....+++|++|+|++|.+++. +..+...+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~-~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l- 94 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINV-GLISV---SNLPKLPKLKKLELSENRIFGG-LDMLAEKL- 94 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCC-GGGGGCCEEEEESS-CCCCC---SSCCCCSSCCEEEEESCCCCSC-CCHHHHHC-
T ss_pred CcccCCEEECCCCCCChhhHHHHH-HhCCCCCEEeCcCC-CCCCh---hhhccCCCCCEEECcCCcCchH-HHHHHhhC-
Confidence 445677777777766522211111 34555666666554 23322 1222355566666665555442 11222212
Q ss_pred CCccEEeccCC
Q 045871 369 NTLSRLLLALC 379 (541)
Q Consensus 369 ~~L~~L~l~~c 379 (541)
++|+.|++++|
T Consensus 95 ~~L~~L~Ls~N 105 (168)
T 2ell_A 95 PNLTHLNLSGN 105 (168)
T ss_dssp TTCCEEECBSS
T ss_pred CCCCEEeccCC
Confidence 34555555553
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.40 E-value=1.3e-07 Score=91.00 Aligned_cols=37 Identities=16% Similarity=0.067 Sum_probs=21.8
Q ss_pred HHhCCCccEEEcCCCc--cHHHHHhcCCCCCeeeccCCCC
Q 045871 440 IIKHCCLKKLSLWGCS--GLDALCLNCPELNDLNLNSCRN 477 (541)
Q Consensus 440 l~~~~~L~~L~L~~~~--~l~~l~~~~~~L~~L~L~~c~~ 477 (541)
+..+++|+.|+|+++. ++ .....+++|+.|++++|..
T Consensus 146 l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 146 LGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp GGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred HccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence 4455667777776663 33 2234566777777766653
No 116
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.39 E-value=7.6e-08 Score=91.78 Aligned_cols=109 Identities=14% Similarity=0.157 Sum_probs=58.1
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHH
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAA 337 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~ 337 (541)
.+++|++|+|+++....-.. .....+++|++|++++|.+.......+ ..+++|+.|+|+++ .++.....
T Consensus 81 ~l~~L~~L~L~~n~l~~~~~-------~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N-~l~~~~~~- 149 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLPL-------GVFDHLTQLDKLYLGGNQLKSLPSGVF--DRLTKLKELRLNTN-QLQSIPAG- 149 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCT-------TTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSS-CCCCCCTT-
T ss_pred cCCcCCEEECCCCcccccCh-------hHhcccCCCCEEEcCCCcCCCcChhHh--ccCCcccEEECcCC-cCCccCHH-
Confidence 45677777777643322111 111256777777777776653221111 34677777777765 33321111
Q ss_pred HHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCC
Q 045871 338 IASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALC 379 (541)
Q Consensus 338 l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c 379 (541)
....+++|++|+|++|.++......+... ++|+.|+++++
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~l~~N 189 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRL--GKLQTITLFGN 189 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTC--TTCCEEECCSC
T ss_pred HcCcCcCCCEEECCCCcCCccCHHHHhCC--CCCCEEEeeCC
Confidence 12336777777777776654332233333 46777777774
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.33 E-value=2.3e-09 Score=107.86 Aligned_cols=225 Identities=13% Similarity=0.007 Sum_probs=124.5
Q ss_pred CCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHH
Q 045871 260 PNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIA 339 (541)
Q Consensus 260 ~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~ 339 (541)
+++++|+|+++.. ...+ ......+++|++|+|++|.+........+ .++++|.++.+.++..++.-.- ...
T Consensus 30 ~~l~~L~Ls~N~i-~~i~------~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f-~~L~~l~~~l~~~~N~l~~l~~-~~f 100 (350)
T 4ay9_X 30 RNAIELRFVLTKL-RVIQ------KGAFSGFGDLEKIEISQNDVLEVIEADVF-SNLPKLHEIRIEKANNLLYINP-EAF 100 (350)
T ss_dssp TTCSEEEEESCCC-SEEC------TTSSTTCTTCCEEEEECCTTCCEECTTSB-CSCTTCCEEEEEEETTCCEECT-TSB
T ss_pred CCCCEEEccCCcC-CCcC------HHHHcCCCCCCEEECcCCCCCCccChhHh-hcchhhhhhhcccCCcccccCc-hhh
Confidence 5688888887432 2211 11122788899999998876432100011 3566766655544444442111 123
Q ss_pred hcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCccc
Q 045871 340 STYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDET 419 (541)
Q Consensus 340 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~ 419 (541)
..+++|++|++++|.|+......+... .++..|++.++..+.......+......|+.|++.......+.... -...
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~--~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~-f~~~ 177 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVHKIHS--LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA-FNGT 177 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCTTCCB--SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS-STTE
T ss_pred hhccccccccccccccccCCchhhccc--chhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh-cccc
Confidence 457889999999887654322222222 3677788877666643221111222345666764322111111110 0112
Q ss_pred ccceeecccchhhcHHHHHHHHhCCCccEEEcCCCccHHHHH-hcCCCCCeeeccCCCCCCHhHHHhcCCCCcEecccC
Q 045871 420 CDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCSGLDALC-LNCPELNDLNLNSCRNLRPETLLLHCPRLESVHASG 497 (541)
Q Consensus 420 ~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~l~-~~~~~L~~L~L~~c~~~~d~~l~~~~p~L~~L~l~~ 497 (541)
.+++|++..++.++......+..+++|+.|+|+++. +..+. ..+.+|+.|.+.++.+++.-.-+..+++|+.+++..
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 368888888888774444456778899999999884 22221 236677777777766554322245678888888764
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.31 E-value=3.4e-07 Score=90.99 Aligned_cols=191 Identities=15% Similarity=0.151 Sum_probs=89.4
Q ss_pred CCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccC--HHHHHHHHh-hCCCCceeeecC--ccC------
Q 045871 190 SALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRIT--GDELGRFVA-DKRCLASLKMEG--IFN------ 258 (541)
Q Consensus 190 ~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it--~~~l~~~~~-~~~~L~~L~l~~--~~~------ 258 (541)
.++++|.+++ .+....+..+...+++|+.|||+++. +. ...-..+.. ....+....+.. +..
T Consensus 25 ~~l~~L~l~g--~i~~~~~~~l~~~l~~L~~LdLs~n~-----i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 25 NSITHLTLTG--KLNAEDFRHLRDEFPSLKVLDISNAE-----IKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVT 97 (329)
T ss_dssp HHCSEEEEEE--EECHHHHHHHHHSCTTCCEEEEEEEE-----ECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEE
T ss_pred CceeEEEEec--cccHHHHHHHHHhhccCeEEecCcce-----eEEecCccccccccccccccccccCHHHhcccccccc
Confidence 4688999987 45556677776668999999999743 33 000000000 000000001111 345
Q ss_pred --CCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHH
Q 045871 259 --CPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVA 336 (541)
Q Consensus 259 --~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~ 336 (541)
|++|++|+|.. .+.... ...+..|++|+.|++.++.+..-+..++ ..+.++..+.+... .......
T Consensus 98 ~g~~~L~~l~L~~--~i~~I~------~~aF~~~~~L~~l~l~~n~i~~i~~~aF--~~~~~l~~l~~~~~--~~~~~~~ 165 (329)
T 3sb4_A 98 KGKQTLEKVILSE--KIKNIE------DAAFKGCDNLKICQIRKKTAPNLLPEAL--ADSVTAIFIPLGSS--DAYRFKN 165 (329)
T ss_dssp EECTTCCC-CBCT--TCCEEC------TTTTTTCTTCCEEEBCCSSCCEECTTSS--CTTTCEEEECTTCT--HHHHTST
T ss_pred cccCCCcEEECCc--cccchh------HHHhhcCcccceEEcCCCCccccchhhh--cCCCceEEecCcch--hhhhccc
Confidence 78888888775 222110 1122378888888888775432211111 23555555554321 0000000
Q ss_pred HH----HhcCCCcc-EEEecCC-CCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeccc
Q 045871 337 AI----ASTYSKLE-LLDLSGS-SISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCG 403 (541)
Q Consensus 337 ~l----~~~~~~L~-~L~L~~~-~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~ 403 (541)
.+ ...|..|+ .+++... .+... +.... ..+.+++.+.+.+ .+....+..+...|++|+.+++.
T Consensus 166 ~i~~~~f~~~~~L~~~i~~~~~~~l~~~-~~~~~-~~~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~ 234 (329)
T 3sb4_A 166 RWEHFAFIEGEPLETTIQVGAMGKLEDE-IMKAG-LQPRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDIS 234 (329)
T ss_dssp TTTTSCEEESCCCEEEEEECTTCCHHHH-HHHTT-CCGGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECT
T ss_pred cccccccccccccceeEEecCCCcHHHH-Hhhcc-cCccccceEEEee--eecHHHHHHHHHhcCCCeEEECC
Confidence 00 12355555 4444433 21111 11100 0124566666655 35555666666667777777643
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.31 E-value=6.6e-07 Score=85.95 Aligned_cols=144 Identities=19% Similarity=0.273 Sum_probs=77.6
Q ss_pred hCCCccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEe
Q 045871 188 KCSALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISL 267 (541)
Q Consensus 188 ~~~~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L 267 (541)
.+++|++|+++++ .+.+- . -...+++|++|+|+++. +++..- +..+++|++|++
T Consensus 39 ~l~~L~~L~l~~n-~i~~l--~-~l~~l~~L~~L~L~~N~-----i~~~~~-----------------l~~l~~L~~L~L 92 (263)
T 1xeu_A 39 ELSGVQNFNGDNS-NIQSL--A-GMQFFTNLKELHLSHNQ-----ISDLSP-----------------LKDLTKLEELSV 92 (263)
T ss_dssp HHTTCSEEECTTS-CCCCC--T-TGGGCTTCCEEECCSSC-----CCCCGG-----------------GTTCSSCCEEEC
T ss_pred hcCcCcEEECcCC-Ccccc--h-HHhhCCCCCEEECCCCc-----cCCChh-----------------hccCCCCCEEEC
Confidence 3466777777774 33221 1 12345777777777643 332100 224566677777
Q ss_pred cccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccE
Q 045871 268 EFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLEL 347 (541)
Q Consensus 268 ~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~ 347 (541)
++|.... .. .+. . ++|+.|++++|.+.+.. .+ ..+++|+.|+|+++ .+++.. . ...+++|++
T Consensus 93 ~~N~l~~-l~-------~~~-~-~~L~~L~L~~N~l~~~~--~l--~~l~~L~~L~Ls~N-~i~~~~--~-l~~l~~L~~ 154 (263)
T 1xeu_A 93 NRNRLKN-LN-------GIP-S-ACLSRLFLDNNELRDTD--SL--IHLKNLEILSIRNN-KLKSIV--M-LGFLSKLEV 154 (263)
T ss_dssp CSSCCSC-CT-------TCC-C-SSCCEEECCSSCCSBSG--GG--TTCTTCCEEECTTS-CCCBCG--G-GGGCTTCCE
T ss_pred CCCccCC-cC-------ccc-c-CcccEEEccCCccCCCh--hh--cCcccccEEECCCC-cCCCCh--H-HccCCCCCE
Confidence 6643322 11 111 2 66777777777665532 11 45677777777665 344321 2 233677777
Q ss_pred EEecCCCCChHHHHHHHhhCCCCccEEeccCC
Q 045871 348 LDLSGSSISDSGIGMICNVFPNTLSRLLLALC 379 (541)
Q Consensus 348 L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c 379 (541)
|+|++|.|++. ..+... ++|+.|+++++
T Consensus 155 L~L~~N~i~~~--~~l~~l--~~L~~L~l~~N 182 (263)
T 1xeu_A 155 LDLHGNEITNT--GGLTRL--KKVNWIDLTGQ 182 (263)
T ss_dssp EECTTSCCCBC--TTSTTC--CCCCEEEEEEE
T ss_pred EECCCCcCcch--HHhccC--CCCCEEeCCCC
Confidence 77777766654 223322 46777777664
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.22 E-value=3.4e-08 Score=91.28 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=7.8
Q ss_pred CCCccEEEecCCCCC
Q 045871 342 YSKLELLDLSGSSIS 356 (541)
Q Consensus 342 ~~~L~~L~L~~~~i~ 356 (541)
+++|++|+|++|.++
T Consensus 75 l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 75 LTSLTYLNLSTNQLQ 89 (208)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred CCCcCEEECCCCcCC
Confidence 455555555555444
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.19 E-value=3.2e-07 Score=82.30 Aligned_cols=59 Identities=14% Similarity=0.045 Sum_probs=35.3
Q ss_pred HhCCCccEEEcCCCc--cHHH--HHhcCCCCCeeeccCCCCCCHh----HHHhcCCCCcEecccCCc
Q 045871 441 IKHCCLKKLSLWGCS--GLDA--LCLNCPELNDLNLNSCRNLRPE----TLLLHCPRLESVHASGCQ 499 (541)
Q Consensus 441 ~~~~~L~~L~L~~~~--~l~~--l~~~~~~L~~L~L~~c~~~~d~----~l~~~~p~L~~L~l~~C~ 499 (541)
..+++|++|+|+++. .+.. ....+++|+.|++++|...... .+...+++|+.|+++++.
T Consensus 85 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 445556666665552 2222 2345677777777776632222 246778888888888876
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.19 E-value=6.7e-07 Score=90.14 Aligned_cols=113 Identities=20% Similarity=0.209 Sum_probs=69.0
Q ss_pred ccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHH
Q 045871 256 IFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASV 335 (541)
Q Consensus 256 ~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l 335 (541)
+..+++|++|+|+++....-. ......+++|+.|+|++|.+.......+ ..+++|+.|+|+++ .++....
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N-~l~~l~~ 153 (361)
T 2xot_A 84 FVPVPNLRYLDLSSNHLHTLD-------EFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQN-QISRFPV 153 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEEC-------TTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSS-CCCSCCG
T ss_pred ccCCCCCCEEECCCCcCCcCC-------HHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCC-cCCeeCH
Confidence 346678888888875432211 1122267889999999887764322222 46788999998876 3433111
Q ss_pred HHH--HhcCCCccEEEecCCCCChHHHHHHHhhCCCC--ccEEeccCCC
Q 045871 336 AAI--ASTYSKLELLDLSGSSISDSGIGMICNVFPNT--LSRLLLALCP 380 (541)
Q Consensus 336 ~~l--~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~--L~~L~l~~c~ 380 (541)
..+ ...+++|++|+|++|.|+.-....+... +. |+.|+|.+.+
T Consensus 154 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l--~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL--PAWVKNGLYLHNNP 200 (361)
T ss_dssp GGTC----CTTCCEEECCSSCCCCCCHHHHHHS--CHHHHTTEECCSSC
T ss_pred HHhcCcccCCcCCEEECCCCCCCccCHHHhhhc--cHhhcceEEecCCC
Confidence 111 0347889999999987776554455444 33 5778888844
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.17 E-value=2.2e-06 Score=76.73 Aligned_cols=85 Identities=14% Similarity=0.158 Sum_probs=36.3
Q ss_pred CCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHH-HHHHHhcCCCccEEEecCCCCChHHH---HHHH
Q 045871 289 NCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDAS-VAAIASTYSKLELLDLSGSSISDSGI---GMIC 364 (541)
Q Consensus 289 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~-l~~l~~~~~~L~~L~L~~~~i~~~~l---~~l~ 364 (541)
.+++|+.|++++|.+..... .++ ..+++|+.|+|+++ .+++.. +.. ...+++|++|++++|.++.... ..+.
T Consensus 62 ~l~~L~~L~Ls~N~l~~~~~-~~~-~~l~~L~~L~L~~N-~i~~~~~~~~-l~~l~~L~~L~l~~N~i~~~~~~~~~~~~ 137 (176)
T 1a9n_A 62 LLRRLKTLLVNNNRICRIGE-GLD-QALPDLTELILTNN-SLVELGDLDP-LASLKSLTYLCILRNPVTNKKHYRLYVIY 137 (176)
T ss_dssp CCSSCCEEECCSSCCCEECS-CHH-HHCTTCCEEECCSC-CCCCGGGGGG-GGGCTTCCEEECCSSGGGGSTTHHHHHHH
T ss_pred cCCCCCEEECCCCcccccCc-chh-hcCCCCCEEECCCC-cCCcchhhHh-hhcCCCCCEEEecCCCCCCcHhHHHHHHH
Confidence 44455555555554432210 001 23555555555544 232211 111 2235566666666654443211 1222
Q ss_pred hhCCCCccEEeccCC
Q 045871 365 NVFPNTLSRLLLALC 379 (541)
Q Consensus 365 ~~~~~~L~~L~l~~c 379 (541)
. + ++|+.|+++++
T Consensus 138 ~-l-~~L~~Ld~~~n 150 (176)
T 1a9n_A 138 K-V-PQVRVLDFQKV 150 (176)
T ss_dssp H-C-TTCSEETTEEC
T ss_pred H-C-CccceeCCCcC
Confidence 2 2 45666666553
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.15 E-value=4.2e-07 Score=84.79 Aligned_cols=112 Identities=18% Similarity=0.236 Sum_probs=67.5
Q ss_pred ccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHH
Q 045871 256 IFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASV 335 (541)
Q Consensus 256 ~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l 335 (541)
+..+++|++|+|+++....-.. ..+. .+++|++|++++|.+..-....+ ..+++|+.|+|+++ .++....
T Consensus 52 ~~~l~~L~~L~Ls~N~i~~~~~------~~~~-~l~~L~~L~Ls~N~l~~l~~~~f--~~l~~L~~L~L~~N-~l~~~~~ 121 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQISELAP------DAFQ-GLRSLNSLVLYGNKITELPKSLF--EGLFSLQLLLLNAN-KINCLRV 121 (220)
T ss_dssp STTCTTCCEEECCSSCCCEECT------TTTT-TCSSCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSS-CCCCCCT
T ss_pred hhCCCCCCEEECCCCcCCCcCH------HHhh-CCcCCCEEECCCCcCCccCHhHc--cCCCCCCEEECCCC-CCCEeCH
Confidence 3456788888888754322111 1122 67888888888887663221111 35788888888876 3432211
Q ss_pred HHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCC
Q 045871 336 AAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCP 380 (541)
Q Consensus 336 ~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~ 380 (541)
. ....+++|++|+|++|.|+......+... ++|+.|+|++.+
T Consensus 122 ~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~N~ 163 (220)
T 2v9t_B 122 D-AFQDLHNLNLLSLYDNKLQTIAKGTFSPL--RAIQTMHLAQNP 163 (220)
T ss_dssp T-TTTTCTTCCEEECCSSCCSCCCTTTTTTC--TTCCEEECCSSC
T ss_pred H-HcCCCCCCCEEECCCCcCCEECHHHHhCC--CCCCEEEeCCCC
Confidence 1 22347888888888887765443334333 578888888743
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.13 E-value=7.7e-08 Score=102.93 Aligned_cols=55 Identities=24% Similarity=0.219 Sum_probs=30.9
Q ss_pred HHhCCCccEEEcCCCc--cH--HHHHhcCCCCCeeeccCCCCCCH----hHHHhcCCCCcEec
Q 045871 440 IIKHCCLKKLSLWGCS--GL--DALCLNCPELNDLNLNSCRNLRP----ETLLLHCPRLESVH 494 (541)
Q Consensus 440 l~~~~~L~~L~L~~~~--~l--~~l~~~~~~L~~L~L~~c~~~~d----~~l~~~~p~L~~L~ 494 (541)
+..+++|+.|+|+++. ++ ......+++|+.|+|++|..... ..+...+|+|+.|+
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 4556667777776663 33 33344566777777766653211 23445566666664
No 126
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.12 E-value=9.6e-07 Score=82.88 Aligned_cols=131 Identities=16% Similarity=0.151 Sum_probs=80.2
Q ss_pred CCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCe
Q 045871 216 PNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQN 295 (541)
Q Consensus 216 ~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~ 295 (541)
++|++|+|+++. ++. +.-..+..+++|++|+|+++....-. ......+++|+.
T Consensus 40 ~~L~~L~Ls~n~-----i~~---------------~~~~~~~~l~~L~~L~L~~N~l~~i~-------~~~~~~l~~L~~ 92 (229)
T 3e6j_A 40 TNAQILYLHDNQ-----ITK---------------LEPGVFDSLINLKELYLGSNQLGALP-------VGVFDSLTQLTV 92 (229)
T ss_dssp TTCSEEECCSSC-----CCC---------------CCTTTTTTCTTCCEEECCSSCCCCCC-------TTTTTTCTTCCE
T ss_pred CCCCEEEcCCCc-----cCc---------------cCHHHhhCccCCcEEECCCCCCCCcC-------hhhcccCCCcCE
Confidence 789999998754 322 00001335678888888875432211 112236788999
Q ss_pred EEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEe
Q 045871 296 IHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLL 375 (541)
Q Consensus 296 L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~ 375 (541)
|++++|.+.......+ ..+++|+.|+|+++ .++. +..-...+++|++|+|++|.|+......+... ++|+.|+
T Consensus 93 L~Ls~N~l~~l~~~~~--~~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~ 165 (229)
T 3e6j_A 93 LDLGTNQLTVLPSAVF--DRLVHLKELFMCCN-KLTE--LPRGIERLTHLTHLALDQNQLKSIPHGAFDRL--SSLTHAY 165 (229)
T ss_dssp EECCSSCCCCCCTTTT--TTCTTCCEEECCSS-CCCS--CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTC--TTCCEEE
T ss_pred EECCCCcCCccChhHh--CcchhhCeEeccCC-cccc--cCcccccCCCCCEEECCCCcCCccCHHHHhCC--CCCCEEE
Confidence 9999987764321111 46788999998876 4441 11122458889999999887765332233333 5788888
Q ss_pred ccCCC
Q 045871 376 LALCP 380 (541)
Q Consensus 376 l~~c~ 380 (541)
+.+.+
T Consensus 166 l~~N~ 170 (229)
T 3e6j_A 166 LFGNP 170 (229)
T ss_dssp CTTSC
T ss_pred eeCCC
Confidence 88843
No 127
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.12 E-value=6.8e-07 Score=82.41 Aligned_cols=110 Identities=14% Similarity=0.177 Sum_probs=66.2
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHH
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAA 337 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~ 337 (541)
.+++|++|+++++....-. ......+++|++|++++|.+.......+ ..+++|+.|+|+++ .++.... .
T Consensus 50 ~l~~L~~L~l~~n~l~~~~-------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N-~l~~~~~-~ 118 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQSLP-------NGVFNKLTSLTYLNLSTNQLQSLPNGVF--DKLTQLKELALNTN-QLQSLPD-G 118 (208)
T ss_dssp TCTTCSEEECCSSCCCCCC-------TTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSS-CCCCCCT-T
T ss_pred ccccCcEEECCCCccCccC-------hhhcCCCCCcCEEECCCCcCCccCHhHh--cCccCCCEEEcCCC-cCcccCH-h
Confidence 5677888888775332211 1122267888888888887654321111 46788888888776 3432111 1
Q ss_pred HHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCC
Q 045871 338 IASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCP 380 (541)
Q Consensus 338 l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~ 380 (541)
....+++|++|+|++|.++......+... ++|+.|++++++
T Consensus 119 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l--~~L~~L~l~~N~ 159 (208)
T 2o6s_A 119 VFDKLTQLKDLRLYQNQLKSVPDGVFDRL--TSLQYIWLHDNP 159 (208)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTC--TTCCEEECCSCC
T ss_pred HhccCCcCCEEECCCCccceeCHHHhccC--CCccEEEecCCC
Confidence 22347888888888887765332223333 578888888853
No 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.10 E-value=1.3e-06 Score=93.26 Aligned_cols=181 Identities=13% Similarity=0.054 Sum_probs=96.7
Q ss_pred CCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHH
Q 045871 259 CPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAI 338 (541)
Q Consensus 259 ~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l 338 (541)
+.+|+.|+|+++.... .+. . ..++|+.|++++|.+..-. ..+++|+.|+|+++ .++. +..
T Consensus 58 ~~~L~~L~Ls~n~L~~-lp~------~---l~~~L~~L~Ls~N~l~~ip------~~l~~L~~L~Ls~N-~l~~--ip~- 117 (571)
T 3cvr_A 58 INQFSELQLNRLNLSS-LPD------N---LPPQITVLEITQNALISLP------ELPASLEYLDACDN-RLST--LPE- 117 (571)
T ss_dssp HTTCSEEECCSSCCSC-CCS------C---CCTTCSEEECCSSCCSCCC------CCCTTCCEEECCSS-CCSC--CCC-
T ss_pred cCCccEEEeCCCCCCc-cCH------h---HcCCCCEEECcCCCCcccc------cccCCCCEEEccCC-CCCC--cch-
Confidence 3578888888754322 110 0 2367888888888776322 34678888888876 3433 111
Q ss_pred HhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCcc
Q 045871 339 ASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDE 418 (541)
Q Consensus 339 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~ 418 (541)
...+|++|+|++|.|+. +.. .+ ++|+.|+++++ .++. + ...+++|+.|++
T Consensus 118 --l~~~L~~L~Ls~N~l~~--lp~---~l-~~L~~L~Ls~N-~l~~--l---p~~l~~L~~L~L---------------- 167 (571)
T 3cvr_A 118 --LPASLKHLDVDNNQLTM--LPE---LP-ALLEYINADNN-QLTM--L---PELPTSLEVLSV---------------- 167 (571)
T ss_dssp --CCTTCCEEECCSSCCSC--CCC---CC-TTCCEEECCSS-CCSC--C---CCCCTTCCEEEC----------------
T ss_pred --hhcCCCEEECCCCcCCC--CCC---cC-ccccEEeCCCC-ccCc--C---CCcCCCcCEEEC----------------
Confidence 12278888888887665 111 22 57888888874 4442 1 114556666653
Q ss_pred cccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cHHH----HHhcCCCCCeeeccCCCCCCHhHHHhcCCCCcE
Q 045871 419 TCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GLDA----LCLNCPELNDLNLNSCRNLRPETLLLHCPRLES 492 (541)
Q Consensus 419 ~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l~~----l~~~~~~L~~L~L~~c~~~~d~~l~~~~p~L~~ 492 (541)
++|. +++ +.. +. ++|+.|+|+++. .+.. +....+.|+.|+|++|....-..-+..+++|+.
T Consensus 168 --------s~N~-L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~ 234 (571)
T 3cvr_A 168 --------RNNQ-LTF-LPE-LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCT 234 (571)
T ss_dssp --------CSSC-CSC-CCC-CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEE
T ss_pred --------CCCC-CCC-cch-hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCE
Confidence 3322 110 000 11 566666666652 1111 111122237777777753221222234777888
Q ss_pred ecccCCccccH
Q 045871 493 VHASGCQELLV 503 (541)
Q Consensus 493 L~l~~C~~it~ 503 (541)
|+|++++ ++.
T Consensus 235 L~L~~N~-l~~ 244 (571)
T 3cvr_A 235 IILEDNP-LSS 244 (571)
T ss_dssp EECCSSS-CCH
T ss_pred EEeeCCc-CCC
Confidence 8888765 543
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.00 E-value=3.6e-07 Score=92.16 Aligned_cols=84 Identities=19% Similarity=0.200 Sum_probs=36.8
Q ss_pred CCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCC
Q 045871 289 NCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFP 368 (541)
Q Consensus 289 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~ 368 (541)
.+++|+.|+|++|.+.......+ ..+++|+.|+|+++ .++.... .....+++|++|+|++|.|+......+...
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~--~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-- 135 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAF--VPVPNLRYLDLSSN-HLHTLDE-FLFSDLQALEVLLLYNNHIVVVDRNAFEDM-- 135 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTC--
T ss_pred cccccCEEECCCCcCCccChhhc--cCCCCCCEEECCCC-cCCcCCH-HHhCCCcCCCEEECCCCcccEECHHHhCCc--
Confidence 45566666666665543221111 24555555555554 2321100 112234555555555555443222222222
Q ss_pred CCccEEeccC
Q 045871 369 NTLSRLLLAL 378 (541)
Q Consensus 369 ~~L~~L~l~~ 378 (541)
.+|+.|+|++
T Consensus 136 ~~L~~L~L~~ 145 (361)
T 2xot_A 136 AQLQKLYLSQ 145 (361)
T ss_dssp TTCCEEECCS
T ss_pred ccCCEEECCC
Confidence 3455555544
No 130
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.99 E-value=1.3e-06 Score=81.45 Aligned_cols=111 Identities=23% Similarity=0.277 Sum_probs=67.1
Q ss_pred cCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHH
Q 045871 257 FNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVA 336 (541)
Q Consensus 257 ~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~ 336 (541)
..+++|++|+|+++....-.. ..+. .+++|++|++++|.+.......+ ..+++|++|+|+++ .++.....
T Consensus 54 ~~l~~L~~L~L~~N~i~~i~~------~~~~-~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N-~l~~~~~~ 123 (220)
T 2v70_A 54 KKLPQLRKINFSNNKITDIEE------GAFE-GASGVNEILLTSNRLENVQHKMF--KGLESLKTLMLRSN-RITCVGND 123 (220)
T ss_dssp GGCTTCCEEECCSSCCCEECT------TTTT-TCTTCCEEECCSSCCCCCCGGGG--TTCSSCCEEECTTS-CCCCBCTT
T ss_pred ccCCCCCEEECCCCcCCEECH------HHhC-CCCCCCEEECCCCccCccCHhHh--cCCcCCCEEECCCC-cCCeECHh
Confidence 356778888887643221110 1122 67788888888887654332222 46788888888876 33321111
Q ss_pred HHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCC
Q 045871 337 AIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCP 380 (541)
Q Consensus 337 ~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~ 380 (541)
. ...+++|++|+|++|.|+......+... ++|+.|+|++.+
T Consensus 124 ~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~N~ 164 (220)
T 2v70_A 124 S-FIGLSSVRLLSLYDNQITTVAPGAFDTL--HSLSTLNLLANP 164 (220)
T ss_dssp S-STTCTTCSEEECTTSCCCCBCTTTTTTC--TTCCEEECCSCC
T ss_pred H-cCCCccCCEEECCCCcCCEECHHHhcCC--CCCCEEEecCcC
Confidence 1 2347788888888887766433444443 578888888743
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.98 E-value=3e-07 Score=84.19 Aligned_cols=101 Identities=23% Similarity=0.211 Sum_probs=64.2
Q ss_pred CCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCC
Q 045871 289 NCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFP 368 (541)
Q Consensus 289 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~ 368 (541)
.+++|++|++++|.+..-. .+ ..+++|+.|+|+++ .++. +......+++|++|+|++|.|++- ..+...
T Consensus 46 ~l~~L~~L~ls~n~l~~l~--~~--~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N~l~~l--~~~~~l-- 114 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEKIS--SL--SGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYNQIASL--SGIEKL-- 114 (198)
T ss_dssp HTTTCSEEECSEEEESCCC--CH--HHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEEECCCH--HHHHHH--
T ss_pred cCCCCCEEECCCCCCcccc--cc--ccCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCCcCCcC--CccccC--
Confidence 6778888888888776522 22 45788888888876 3331 122333357788888888877763 345544
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCcceec
Q 045871 369 NTLSRLLLALCPNITSSGIQFATAQLPLLELMD 401 (541)
Q Consensus 369 ~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~ 401 (541)
++|+.|+++++ .+++.........+++|+.++
T Consensus 115 ~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 115 VNLRVLYMSNN-KITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp HHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEE
T ss_pred CCCCEEECCCC-cCCchhHHHHHhcCCCCCEEE
Confidence 57888888885 465433222334566666665
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.97 E-value=1.8e-06 Score=80.46 Aligned_cols=134 Identities=21% Similarity=0.236 Sum_probs=81.7
Q ss_pred CccEEEecCCCCCChhhHHHHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEeccc
Q 045871 191 ALVRLSLTMESDVDATMLACIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISLEFS 270 (541)
Q Consensus 191 ~L~~L~L~~~~~~~~~~L~~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~ 270 (541)
.+++|+|++. .+....-......+++|++|+|+++. ++. +.-..+..+++|++|+|+++
T Consensus 33 ~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-----i~~---------------i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 33 YTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-----ITD---------------IEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-----CCE---------------ECTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-----CCE---------------ECHHHhCCCCCCCEEECCCC
Confidence 4667777763 23211001112456777777777543 221 11111456789999999986
Q ss_pred CCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEe
Q 045871 271 RQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDL 350 (541)
Q Consensus 271 ~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L 350 (541)
....-.. ..+ ..+++|++|++++|.+.......+ ..+++|+.|+|+++ .++..... ....+++|++|+|
T Consensus 92 ~l~~~~~------~~~-~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L 160 (220)
T 2v70_A 92 RLENVQH------KMF-KGLESLKTLMLRSNRITCVGNDSF--IGLSSVRLLSLYDN-QITTVAPG-AFDTLHSLSTLNL 160 (220)
T ss_dssp CCCCCCG------GGG-TTCSSCCEEECTTSCCCCBCTTSS--TTCTTCSEEECTTS-CCCCBCTT-TTTTCTTCCEEEC
T ss_pred ccCccCH------hHh-cCCcCCCEEECCCCcCCeECHhHc--CCCccCCEEECCCC-cCCEECHH-HhcCCCCCCEEEe
Confidence 5443221 113 378999999999998765432222 46899999999986 44432112 2234889999999
Q ss_pred cCCCCC
Q 045871 351 SGSSIS 356 (541)
Q Consensus 351 ~~~~i~ 356 (541)
++|.++
T Consensus 161 ~~N~l~ 166 (220)
T 2v70_A 161 LANPFN 166 (220)
T ss_dssp CSCCEE
T ss_pred cCcCCc
Confidence 998664
No 133
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.96 E-value=1.1e-06 Score=82.55 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=31.3
Q ss_pred CCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCC
Q 045871 290 CPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSIS 356 (541)
Q Consensus 290 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~ 356 (541)
.++|+.|++++|.+.......+ ..+++|+.|+|+++ .++.... .....+++|++|+|++|.|+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L~~N-~l~~i~~-~~~~~l~~L~~L~Ls~N~l~ 101 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVF--DSLINLKELYLGSN-QLGALPV-GVFDSLTQLTVLDLGTNQLT 101 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCEEEcCCCccCccCHHHh--hCccCCcEEECCCC-CCCCcCh-hhcccCCCcCEEECCCCcCC
Confidence 3567777777776654321111 34566666666654 2221100 11223555666666665544
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.94 E-value=9.4e-06 Score=80.49 Aligned_cols=124 Identities=15% Similarity=0.079 Sum_probs=70.2
Q ss_pred CCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCC
Q 045871 316 LRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLP 395 (541)
Q Consensus 316 ~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~ 395 (541)
..++..+.+.+. +.......+...|++|++|+|.+|.|+.-+-.++... .+|+.|++.+ ++..-+ .....+|+
T Consensus 201 ~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~--~~L~~l~l~~--ni~~I~-~~aF~~~~ 273 (329)
T 3sb4_A 201 PRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQK--KYLLKIKLPH--NLKTIG-QRVFSNCG 273 (329)
T ss_dssp GGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTC--TTCCEEECCT--TCCEEC-TTTTTTCT
T ss_pred ccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCC--CCCCEEECCc--ccceeh-HHHhhCCh
Confidence 345566666543 5566666666667777777777766655444444433 4677777765 132111 11224566
Q ss_pred Ccc-eecccCCcCCCCCCCCCCcccccceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cHH-HHHhcCCCCCeee
Q 045871 396 LLE-LMDCGMSICDPTSEDSNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GLD-ALCLNCPELNDLN 471 (541)
Q Consensus 396 ~L~-~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l~-~l~~~~~~L~~L~ 471 (541)
+|+ .+++.. .+.......+..|++|+.|++.+.. .+. ..+.+|++|+.|.
T Consensus 274 ~L~~~l~l~~--------------------------~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 274 RLAGTLELPA--------------------------SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCCEEEEECT--------------------------TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred hccEEEEEcc--------------------------cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 666 665322 1111112236788999999996542 332 3456788888875
Q ss_pred c
Q 045871 472 L 472 (541)
Q Consensus 472 L 472 (541)
.
T Consensus 328 ~ 328 (329)
T 3sb4_A 328 K 328 (329)
T ss_dssp C
T ss_pred c
Confidence 3
No 135
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.93 E-value=7.9e-07 Score=82.91 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=29.7
Q ss_pred CCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCC
Q 045871 291 PRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSIS 356 (541)
Q Consensus 291 ~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~ 356 (541)
++|+.|+++++.+.......+ ..+++|+.|+|+++ .++..... ...++++|++|+|++|.|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~--~~l~~L~~L~Ls~N-~i~~~~~~-~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAF--SPYKKLRRIDLSNN-QISELAPD-AFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSS--TTCTTCCEEECCSS-CCCEECTT-TTTTCSSCCEEECCSSCCC
T ss_pred cCCCEEECCCCcCCCcCHhHh--hCCCCCCEEECCCC-cCCCcCHH-HhhCCcCCCEEECCCCcCC
Confidence 467788887776543221111 24555666666554 23211111 1123455555555555444
No 136
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.87 E-value=5.5e-06 Score=88.27 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=84.1
Q ss_pred CCCceeeecC--cc-----CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCC
Q 045871 246 RCLASLKMEG--IF-----NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRG 318 (541)
Q Consensus 246 ~~L~~L~l~~--~~-----~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 318 (541)
.+|+.|.+.+ +. -+++|++|+|++|... ..+ ..+++|+.|++++|.+..-. .+ ..+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~-~ip----------~~l~~L~~L~Ls~N~l~~ip--~l----~~~ 121 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALI-SLP----------ELPASLEYLDACDNRLSTLP--EL----PAS 121 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCS-CCC----------CCCTTCCEEECCSSCCSCCC--CC----CTT
T ss_pred CCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCc-ccc----------cccCCCCEEEccCCCCCCcc--hh----hcC
Confidence 4789998877 11 2467999999986433 221 26789999999999887522 11 238
Q ss_pred CCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 045871 319 LRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLE 398 (541)
Q Consensus 319 L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~ 398 (541)
|+.|+|+++ .++. +.. .+++|++|+|++|.|+.-. . . +++|+.|+|+++ .++. +..+ .++|+
T Consensus 122 L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~l~~lp--~---~-l~~L~~L~Ls~N-~L~~--lp~l---~~~L~ 183 (571)
T 3cvr_A 122 LKHLDVDNN-QLTM--LPE---LPALLEYINADNNQLTMLP--E---L-PTSLEVLSVRNN-QLTF--LPEL---PESLE 183 (571)
T ss_dssp CCEEECCSS-CCSC--CCC---CCTTCCEEECCSSCCSCCC--C---C-CTTCCEEECCSS-CCSC--CCCC---CTTCC
T ss_pred CCEEECCCC-cCCC--CCC---cCccccEEeCCCCccCcCC--C---c-CCCcCEEECCCC-CCCC--cchh---hCCCC
Confidence 999999987 4443 111 5899999999999887521 1 2 268999999996 4543 1111 26777
Q ss_pred eeccc
Q 045871 399 LMDCG 403 (541)
Q Consensus 399 ~l~~~ 403 (541)
.|++.
T Consensus 184 ~L~Ls 188 (571)
T 3cvr_A 184 ALDVS 188 (571)
T ss_dssp EEECC
T ss_pred EEECc
Confidence 77753
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.87 E-value=7.4e-07 Score=89.41 Aligned_cols=227 Identities=15% Similarity=0.059 Sum_probs=118.7
Q ss_pred CCccEEEecCCCCCChhhHH-HHhhcCCCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEec
Q 045871 190 SALVRLSLTMESDVDATMLA-CIAFSCPNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISLE 268 (541)
Q Consensus 190 ~~L~~L~L~~~~~~~~~~L~-~l~~~~~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L~ 268 (541)
.++++|+|++ ..++. +. .....+++|++|+|+++. +. +.+.-..+..+++|.++.+.
T Consensus 30 ~~l~~L~Ls~-N~i~~--i~~~~f~~l~~L~~L~Ls~N~-----i~--------------~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 30 RNAIELRFVL-TKLRV--IQKGAFSGFGDLEKIEISQND-----VL--------------EVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TTCSEEEEES-CCCSE--ECTTSSTTCTTCCEEEEECCT-----TC--------------CEECTTSBCSCTTCCEEEEE
T ss_pred CCCCEEEccC-CcCCC--cCHHHHcCCCCCCEEECcCCC-----CC--------------CccChhHhhcchhhhhhhcc
Confidence 4688888887 33431 11 112456788888888653 21 11111112345666655444
Q ss_pred ccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEE
Q 045871 269 FSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELL 348 (541)
Q Consensus 269 ~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L 348 (541)
.+..+.... ......+++|+.|++++|.+........ .....+..|++.++..++.-....+......|+.|
T Consensus 88 ~~N~l~~l~------~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L 159 (350)
T 4ay9_X 88 KANNLLYIN------PEAFQNLPNLQYLLISNTGIKHLPDVHK--IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 159 (350)
T ss_dssp EETTCCEEC------TTSBCCCTTCCEEEEEEECCSSCCCCTT--CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred cCCcccccC------chhhhhccccccccccccccccCCchhh--cccchhhhhhhccccccccccccchhhcchhhhhh
Confidence 333333211 1122377889999998887653321111 23445667777665444432111122223468889
Q ss_pred EecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCcccccceeeccc
Q 045871 349 DLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDETCDFELQKAF 428 (541)
Q Consensus 349 ~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~ 428 (541)
+|++|.|+.-....+ .. .+|++|.+.+++.++...- .+...+++|+.|++.... ..........+++.|.+..
T Consensus 160 ~L~~N~i~~i~~~~f-~~--~~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N~---l~~lp~~~~~~L~~L~~l~ 232 (350)
T 4ay9_X 160 WLNKNGIQEIHNSAF-NG--TQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRTR---IHSLPSYGLENLKKLRARS 232 (350)
T ss_dssp ECCSSCCCEECTTSS-TT--EEEEEEECTTCTTCCCCCT-TTTTTEECCSEEECTTSC---CCCCCSSSCTTCCEEECTT
T ss_pred ccccccccCCChhhc-cc--cchhHHhhccCCcccCCCH-HHhccCcccchhhcCCCC---cCccChhhhccchHhhhcc
Confidence 999988775221111 12 4688888887766653211 123457888888854322 1111222233466777777
Q ss_pred chhhcHHHHHHHHhCCCccEEEcCCCc
Q 045871 429 NNKLHLMYQKLIIKHCCLKKLSLWGCS 455 (541)
Q Consensus 429 c~~l~~~~~~~l~~~~~L~~L~L~~~~ 455 (541)
++.+.... .+.++++|+.+++....
T Consensus 233 ~~~l~~lP--~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 233 TYNLKKLP--TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CTTCCCCC--CTTTCCSCCEEECSCHH
T ss_pred CCCcCcCC--CchhCcChhhCcCCCCc
Confidence 76655211 14556777777776543
No 138
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.82 E-value=9.3e-06 Score=77.09 Aligned_cols=45 Identities=27% Similarity=0.308 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhh--HHHHhhccccc
Q 045871 126 GGLPAAALWEVLRRLPPPGLLAAAQVCKGWRETS--RRLWRAAEELR 170 (541)
Q Consensus 126 ~~LP~eil~~If~~L~~~~l~~~~~Vck~W~~~~--~~~~~~i~~~~ 170 (541)
+.||+||+.+||+||+++|++++++|||+|+.++ +.+|+.+-..+
T Consensus 6 ~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd 52 (312)
T 3l2o_B 6 TRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRD 52 (312)
T ss_dssp HHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred HhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhcc
Confidence 4579999999999999999999999999999999 99998775433
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.78 E-value=1.5e-05 Score=72.75 Aligned_cols=62 Identities=23% Similarity=0.272 Sum_probs=31.5
Q ss_pred CCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCC
Q 045871 290 CPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSIS 356 (541)
Q Consensus 290 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~ 356 (541)
+++|+.|++++|.+..-. .+ ..+++|+.|+|.++ .+++.........+++|++|++++|.++
T Consensus 92 ~~~L~~L~L~~N~l~~l~--~~--~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 92 ADTLEELWISYNQIASLS--GI--EKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHCSEEEEEEEECCCHH--HH--HHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCcCCEEECcCCcCCcCC--cc--ccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 346667777666665422 22 24556666666654 3433221112223666666666665443
No 140
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.77 E-value=1.1e-05 Score=77.45 Aligned_cols=42 Identities=36% Similarity=0.627 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHhcCChhhHH-HHHHHHHHHHHhh--HHHHhhcc
Q 045871 126 GGLPAAALWEVLRRLPPPGLL-AAAQVCKGWRETS--RRLWRAAE 167 (541)
Q Consensus 126 ~~LP~eil~~If~~L~~~~l~-~~~~Vck~W~~~~--~~~~~~i~ 167 (541)
..||+||+.+||++|++++++ +|++|||+|+.++ +.+|+..-
T Consensus 52 ~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~ 96 (297)
T 2e31_A 52 AELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKC 96 (297)
T ss_dssp TSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHH
T ss_pred hhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHh
Confidence 568999999999999999999 9999999999999 88998764
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.43 E-value=2e-05 Score=70.42 Aligned_cols=109 Identities=14% Similarity=0.200 Sum_probs=68.3
Q ss_pred CCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHH
Q 045871 259 CPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAI 338 (541)
Q Consensus 259 ~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l 338 (541)
.++|++|+++++....-.. .....+++|++|++++|.+.......+ ..+++|+.|+|+++ .++.... ..
T Consensus 27 ~~~l~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~N-~l~~~~~-~~ 95 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPH-------GVFDKLTQLTKLSLSQNQIQSLPDGVF--DKLTKLTILYLHEN-KLQSLPN-GV 95 (177)
T ss_dssp CTTCSEEECCSSCCCCCCT-------TTTTTCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCSS-CCCCCCT-TT
T ss_pred CCCCcEEEeCCCcccEeCH-------HHhcCcccccEEECCCCcceEeChhHc--cCCCccCEEECCCC-CccccCH-HH
Confidence 3678888888754332111 122267889999999987764322111 46788999999876 3442111 12
Q ss_pred HhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCC
Q 045871 339 ASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCP 380 (541)
Q Consensus 339 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~ 380 (541)
...+++|++|+|++|.++......+... ++|+.|++++++
T Consensus 96 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l--~~L~~L~l~~N~ 135 (177)
T 2o6r_A 96 FDKLTQLKELALDTNQLKSVPDGIFDRL--TSLQKIWLHTNP 135 (177)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTC--TTCCEEECCSSC
T ss_pred hhCCcccCEEECcCCcceEeCHHHhcCC--cccCEEEecCCC
Confidence 2447889999999987774322222323 589999998854
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.41 E-value=3.1e-05 Score=70.42 Aligned_cols=107 Identities=21% Similarity=0.246 Sum_probs=66.8
Q ss_pred CCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHH
Q 045871 260 PNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIA 339 (541)
Q Consensus 260 ~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~ 339 (541)
++|++|+|+++... ..+ ..+. .+++|+.|++++|.+.......+ ..+++|++|+|+++ .++..... ..
T Consensus 31 ~~l~~L~L~~n~i~-~ip------~~~~-~l~~L~~L~Ls~N~i~~i~~~~f--~~l~~L~~L~Ls~N-~l~~i~~~-~f 98 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVP------KELS-NYKHLTLIDLSNNRISTLSNQSF--SNMTQLLTLILSYN-RLRCIPPR-TF 98 (193)
T ss_dssp TTCCEEECCSSCCC-SCC------GGGG-GCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSS-CCCBCCTT-TT
T ss_pred CCCCEEECCCCcCc-hhH------HHhh-cccCCCEEECCCCcCCEeCHhHc--cCCCCCCEEECCCC-ccCEeCHH-Hh
Confidence 57888888875332 211 1233 77889999999887765332222 46788899998876 34322111 12
Q ss_pred hcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCC
Q 045871 340 STYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCP 380 (541)
Q Consensus 340 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~ 380 (541)
..+++|++|+|++|.|+......+... ++|+.|++++.+
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~N~ 137 (193)
T 2wfh_A 99 DGLKSLRLLSLHGNDISVVPEGAFNDL--SALSHLAIGANP 137 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTC--TTCCEEECCSSC
T ss_pred CCCCCCCEEECCCCCCCeeChhhhhcC--ccccEEEeCCCC
Confidence 347889999999887775332233333 578888888743
No 143
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.40 E-value=4.5e-05 Score=81.38 Aligned_cols=122 Identities=19% Similarity=0.163 Sum_probs=73.7
Q ss_pred CcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHh
Q 045871 261 NMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIAS 340 (541)
Q Consensus 261 ~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~ 340 (541)
.|+.|+|+++... ..+ .+. .+++|+.|++++|.+..-. ..+ ..+++|+.|+|+++ .++. +. -..
T Consensus 442 ~L~~L~Ls~n~l~-~lp-------~~~-~l~~L~~L~Ls~N~l~~lp-~~~--~~l~~L~~L~Ls~N-~l~~--lp-~l~ 505 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLC-------HLE-QLLLVTHLDLSHNRLRALP-PAL--AALRCLEVLQASDN-ALEN--VD-GVA 505 (567)
T ss_dssp TCSEEECTTSCCS-SCC-------CGG-GGTTCCEEECCSSCCCCCC-GGG--GGCTTCCEEECCSS-CCCC--CG-GGT
T ss_pred CceEEEecCCCCC-CCc-------Ccc-ccccCcEeecCcccccccc-hhh--hcCCCCCEEECCCC-CCCC--Cc-ccC
Confidence 4677777764322 221 122 6778888888888766211 122 46788888888776 4443 22 234
Q ss_pred cCCCccEEEecCCCCChHH-HHHHHhhCCCCccEEeccCCCCCCHH--HHHHHHhcCCCcceec
Q 045871 341 TYSKLELLDLSGSSISDSG-IGMICNVFPNTLSRLLLALCPNITSS--GIQFATAQLPLLELMD 401 (541)
Q Consensus 341 ~~~~L~~L~L~~~~i~~~~-l~~l~~~~~~~L~~L~l~~c~~l~~~--~l~~l~~~~~~L~~l~ 401 (541)
.+++|++|+|++|.|+... ...+... ++|+.|+|+++ .++.. ....+...+++|+.|+
T Consensus 506 ~l~~L~~L~Ls~N~l~~~~~p~~l~~l--~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 506 NLPRLQELLLCNNRLQQSAAIQPLVSC--PRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp TCSSCCEEECCSSCCCSSSTTGGGGGC--TTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCcEEECCCCCCCCCCCcHHHhcC--CCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 4788888888888777654 4445544 57888888884 34321 2233445577777764
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.38 E-value=1.2e-05 Score=73.14 Aligned_cols=109 Identities=25% Similarity=0.235 Sum_probs=67.9
Q ss_pred CCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHH
Q 045871 260 PNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIA 339 (541)
Q Consensus 260 ~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~ 339 (541)
++|++|+++++....-.. ..+...+++|++|++++|.+.......+ ..+++|+.|+|+++ .++..... ..
T Consensus 29 ~~l~~L~l~~n~i~~~~~------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N-~l~~~~~~-~~ 98 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISS------DGLFGRLPHLVKLELKRNQLTGIEPNAF--EGASHIQELQLGEN-KIKEISNK-MF 98 (192)
T ss_dssp TTCSEEECCSCCCCSBCC------SCSGGGCTTCCEEECCSSCCCCBCTTTT--TTCTTCCEEECCSC-CCCEECSS-SS
T ss_pred CCCCEEECCCCcCCccCC------ccccccCCCCCEEECCCCCCCCcCHhHc--CCcccCCEEECCCC-cCCccCHH-Hh
Confidence 478888888753322111 0112267889999999987765422222 46788999998876 44432111 12
Q ss_pred hcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCC
Q 045871 340 STYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCP 380 (541)
Q Consensus 340 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~ 380 (541)
..+++|++|+|++|.|+......+... ++|+.|++++.+
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~N~ 137 (192)
T 1w8a_A 99 LGLHQLKTLNLYDNQISCVMPGSFEHL--NSLTSLNLASNP 137 (192)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSSTTC--TTCCEEECTTCC
T ss_pred cCCCCCCEEECCCCcCCeeCHHHhhcC--CCCCEEEeCCCC
Confidence 347889999999988876433334433 578888888843
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.37 E-value=7.2e-05 Score=66.69 Aligned_cols=111 Identities=13% Similarity=0.126 Sum_probs=71.9
Q ss_pred CCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCe
Q 045871 216 PNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQN 295 (541)
Q Consensus 216 ~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~ 295 (541)
++|++|+++++. ++. +.-..+..+++|++|+++++....-.. .....+++|+.
T Consensus 28 ~~l~~L~l~~n~-----l~~---------------~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~ 80 (177)
T 2o6r_A 28 SSATRLELESNK-----LQS---------------LPHGVFDKLTQLTKLSLSQNQIQSLPD-------GVFDKLTKLTI 80 (177)
T ss_dssp TTCSEEECCSSC-----CCC---------------CCTTTTTTCTTCSEEECCSSCCCCCCT-------TTTTTCTTCCE
T ss_pred CCCcEEEeCCCc-----ccE---------------eCHHHhcCcccccEEECCCCcceEeCh-------hHccCCCccCE
Confidence 789999998753 321 100003356889999998864332211 12237889999
Q ss_pred EEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCh
Q 045871 296 IHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISD 357 (541)
Q Consensus 296 L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~ 357 (541)
|++++|.+.......+ ..+++|+.|+|+++ .++... ..+...+++|++|+|++|.++.
T Consensus 81 L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 81 LYLHENKLQSLPNGVF--DKLTQLKELALDTN-QLKSVP-DGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp EECCSSCCCCCCTTTT--TTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSCBCC
T ss_pred EECCCCCccccCHHHh--hCCcccCEEECcCC-cceEeC-HHHhcCCcccCEEEecCCCeec
Confidence 9999998764332112 46889999999887 444211 1223458999999999997654
No 146
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.30 E-value=6.9e-05 Score=68.05 Aligned_cols=109 Identities=19% Similarity=0.227 Sum_probs=71.0
Q ss_pred CCccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecCccCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCe
Q 045871 216 PNLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEGIFNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQN 295 (541)
Q Consensus 216 ~~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~ 295 (541)
++|++|+|++.. ++. +.. .+..+++|++|+|+++....-.. ..+. .+++|++
T Consensus 31 ~~l~~L~L~~n~-----i~~--ip~--------------~~~~l~~L~~L~Ls~N~i~~i~~------~~f~-~l~~L~~ 82 (193)
T 2wfh_A 31 RDVTELYLDGNQ-----FTL--VPK--------------ELSNYKHLTLIDLSNNRISTLSN------QSFS-NMTQLLT 82 (193)
T ss_dssp TTCCEEECCSSC-----CCS--CCG--------------GGGGCTTCCEEECCSSCCCCCCT------TTTT-TCTTCCE
T ss_pred CCCCEEECCCCc-----Cch--hHH--------------HhhcccCCCEEECCCCcCCEeCH------hHcc-CCCCCCE
Confidence 689999998743 331 000 13467888999998764433221 1122 7889999
Q ss_pred EEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCC
Q 045871 296 IHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSIS 356 (541)
Q Consensus 296 L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~ 356 (541)
|++++|.+.......+ ..+++|+.|+|.++ .++.... .....+++|++|+|++|.+.
T Consensus 83 L~Ls~N~l~~i~~~~f--~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTF--DGLKSLRLLSLHGN-DISVVPE-GAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EECCSSCCCBCCTTTT--TTCTTCCEEECCSS-CCCBCCT-TTTTTCTTCCEEECCSSCEE
T ss_pred EECCCCccCEeCHHHh--CCCCCCCEEECCCC-CCCeeCh-hhhhcCccccEEEeCCCCee
Confidence 9999998765432222 46899999999886 4442111 12334889999999998553
No 147
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.29 E-value=5.3e-05 Score=68.70 Aligned_cols=89 Identities=13% Similarity=0.220 Sum_probs=60.8
Q ss_pred cCCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHH
Q 045871 257 FNCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVA 336 (541)
Q Consensus 257 ~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~ 336 (541)
..+++|++|+|+++....-.. ..+. .+++|++|++++|.+.......+ ..+++|+.|+|+++ .++.....
T Consensus 51 ~~l~~L~~L~Ls~N~l~~~~~------~~~~-~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N-~l~~~~~~ 120 (192)
T 1w8a_A 51 GRLPHLVKLELKRNQLTGIEP------NAFE-GASHIQELQLGENKIKEISNKMF--LGLHQLKTLNLYDN-QISCVMPG 120 (192)
T ss_dssp GGCTTCCEEECCSSCCCCBCT------TTTT-TCTTCCEEECCSCCCCEECSSSS--TTCTTCCEEECCSS-CCCEECTT
T ss_pred ccCCCCCEEECCCCCCCCcCH------hHcC-CcccCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCC-cCCeeCHH
Confidence 367889999998865433211 1233 78899999999998765432222 46899999999987 44432111
Q ss_pred HHHhcCCCccEEEecCCCCC
Q 045871 337 AIASTYSKLELLDLSGSSIS 356 (541)
Q Consensus 337 ~l~~~~~~L~~L~L~~~~i~ 356 (541)
....+++|++|+|++|.++
T Consensus 121 -~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 121 -SFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp -SSTTCTTCCEEECTTCCBC
T ss_pred -HhhcCCCCCEEEeCCCCcc
Confidence 2234889999999999665
No 148
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.24 E-value=0.00025 Score=73.09 Aligned_cols=42 Identities=17% Similarity=0.385 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhh---HHHHhhcc
Q 045871 126 GGLPAAALWEVLRRLPPPGLLAAAQVCKGWRETS---RRLWRAAE 167 (541)
Q Consensus 126 ~~LP~eil~~If~~L~~~~l~~~~~Vck~W~~~~---~~~~~~i~ 167 (541)
..||+||+.+||+||+++++++|++|||+|+.++ ..+|+..-
T Consensus 16 ~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~ 60 (464)
T 3v7d_B 16 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL 60 (464)
T ss_dssp HHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred HHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3489999999999999999999999999999998 58998764
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.11 E-value=0.00023 Score=67.79 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=13.5
Q ss_pred HHHHHhcCCCCCCeEEecCcccch
Q 045871 282 MADGLGRNCPRLQNIHIASIRLSH 305 (541)
Q Consensus 282 l~~~l~~~~~~L~~L~l~~~~i~~ 305 (541)
++..+...+++|+.|+|++|.+..
T Consensus 161 ~l~i~~~~l~~L~~L~Ls~N~l~~ 184 (267)
T 3rw6_A 161 TLRIIEENIPELLSLNLSNNRLYR 184 (267)
T ss_dssp HHHHHHHHCTTCCEEECTTSCCCC
T ss_pred HHHHHHhhCCCCCEEECCCCCCCC
Confidence 344444456666666666665543
No 150
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.04 E-value=0.00013 Score=80.32 Aligned_cols=105 Identities=16% Similarity=0.078 Sum_probs=49.1
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHH
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAA 337 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~ 337 (541)
.+++|+.|+|+++....-. ..++ .+++|++|+|++|.+..-. ..+ ..+++|+.|+|+++ .++ .+..
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~-------~~~~-~l~~L~~L~Ls~N~l~~lp-~~~--~~l~~L~~L~Ls~N-~l~--~lp~ 287 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNIS-------ANIF-KYDFLTRLYLNGNSLTELP-AEI--KNLSNLRVLDLSHN-RLT--SLPA 287 (727)
T ss_dssp CCCCCCEEECTTSCCSCCC-------GGGG-GCCSCSCCBCTTSCCSCCC-GGG--GGGTTCCEEECTTS-CCS--SCCS
T ss_pred cCCCCcEEECCCCCCCCCC-------hhhc-CCCCCCEEEeeCCcCcccC-hhh--hCCCCCCEEeCcCC-cCC--ccCh
Confidence 4455666666654332111 1122 4566666666666554110 111 35566666666654 233 1111
Q ss_pred HHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCC
Q 045871 338 IASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALC 379 (541)
Q Consensus 338 l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c 379 (541)
-...+++|++|+|++|.|+.- ...|... .+|+.|+|+++
T Consensus 288 ~~~~l~~L~~L~L~~N~l~~l-p~~~~~l--~~L~~L~L~~N 326 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNMVTTL-PWEFGNL--CNLQFLGVEGN 326 (727)
T ss_dssp SGGGGTTCSEEECCSSCCCCC-CSSTTSC--TTCCCEECTTS
T ss_pred hhcCCCCCCEEECCCCCCCcc-ChhhhcC--CCccEEeCCCC
Confidence 123356666666666655421 1112222 45666666663
No 151
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.01 E-value=0.00027 Score=72.47 Aligned_cols=42 Identities=33% Similarity=0.533 Sum_probs=37.9
Q ss_pred CCCCHH----HHHHHHhcCChhhHHHHHHHHHHHHHhh--HHHHhhcc
Q 045871 126 GGLPAA----ALWEVLRRLPPPGLLAAAQVCKGWRETS--RRLWRAAE 167 (541)
Q Consensus 126 ~~LP~e----il~~If~~L~~~~l~~~~~Vck~W~~~~--~~~~~~i~ 167 (541)
..||+| |+.+||+||++++++++++|||+|+.++ ..+|+.+-
T Consensus 12 ~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~ 59 (435)
T 1p22_A 12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLI 59 (435)
T ss_dssp HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHH
T ss_pred HHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 347999 9999999999999999999999999999 78898663
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.85 E-value=0.00012 Score=74.45 Aligned_cols=98 Identities=14% Similarity=0.207 Sum_probs=45.0
Q ss_pred CCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCC-CCCCHHHHHHHHhcCCCccEEEecCC--CCChHHHHHHHh
Q 045871 289 NCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLG-SEITDASVAAIASTYSKLELLDLSGS--SISDSGIGMICN 365 (541)
Q Consensus 289 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~-~~i~d~~l~~l~~~~~~L~~L~L~~~--~i~~~~l~~l~~ 365 (541)
.|++|+.+++..+.+..-...+. .+.+|+.+.|... ..|.+. ...+|++|+.++|..+ .|.+.. +..
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF---~~~~L~~l~lp~~l~~I~~~----aF~~~~~L~~l~l~~~l~~I~~~a---F~~ 247 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTF---VYAGIEEVLLPVTLKEIGSQ----AFLKTSQLKTIEIPENVSTIGQEA---FRE 247 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTT---TTCCCSEEECCTTCCEECTT----TTTTCTTCCCEECCTTCCEECTTT---TTT
T ss_pred CcccCCeeecCCCcceEechhhE---eecccCEEEeCCchheehhh----HhhCCCCCCEEecCCCccCccccc---ccc
Confidence 56677777776554332211111 2456666666532 112211 1234667777777653 232222 222
Q ss_pred hCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceecc
Q 045871 366 VFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDC 402 (541)
Q Consensus 366 ~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~ 402 (541)
.+|+.+.|.. .++.-+ .....+|++|+.+++
T Consensus 248 ---~~L~~i~lp~--~i~~I~-~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 248 ---SGITTVKLPN--GVTNIA-SRAFYYCPELAEVTT 278 (401)
T ss_dssp ---CCCSEEEEET--TCCEEC-TTTTTTCTTCCEEEE
T ss_pred ---CCccEEEeCC--CccEEC-hhHhhCCCCCCEEEe
Confidence 2566666643 222100 112245666766654
No 153
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.78 E-value=0.00049 Score=70.64 Aligned_cols=42 Identities=40% Similarity=0.597 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhh--HHHHhhcc
Q 045871 126 GGLPAAALWEVLRRLPPPGLLAAAQVCKGWRETS--RRLWRAAE 167 (541)
Q Consensus 126 ~~LP~eil~~If~~L~~~~l~~~~~Vck~W~~~~--~~~~~~i~ 167 (541)
..||+|++.+||+||++++++++++|||+|+.++ ..+|+..-
T Consensus 20 ~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~ 63 (445)
T 2ovr_B 20 SLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKC 63 (445)
T ss_dssp TSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHH
T ss_pred HHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhe
Confidence 4589999999999999999999999999999999 67898653
No 154
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.72 E-value=0.00038 Score=76.61 Aligned_cols=102 Identities=15% Similarity=-0.018 Sum_probs=50.2
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCcceecccCCcCCCCCCCCCCcccccceeecccchhhcHHHHHHHHhCCCccE
Q 045871 369 NTLSRLLLALCPNITSSGIQFATAQLPLLELMDCGMSICDPTSEDSNSDETCDFELQKAFNNKLHLMYQKLIIKHCCLKK 448 (541)
Q Consensus 369 ~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~c~~l~~~~~~~l~~~~~L~~ 448 (541)
.+|+.|+|+++. +.. +..-...+++|+.|++...... .+...+..+++|+.
T Consensus 224 ~~L~~L~Ls~n~-l~~--l~~~~~~l~~L~~L~Ls~N~l~--------------------------~lp~~~~~l~~L~~ 274 (727)
T 4b8c_D 224 QLWHALDLSNLQ-IFN--ISANIFKYDFLTRLYLNGNSLT--------------------------ELPAEIKNLSNLRV 274 (727)
T ss_dssp CCCCEEECTTSC-CSC--CCGGGGGCCSCSCCBCTTSCCS--------------------------CCCGGGGGGTTCCE
T ss_pred CCCcEEECCCCC-CCC--CChhhcCCCCCCEEEeeCCcCc--------------------------ccChhhhCCCCCCE
Confidence 579999998853 431 1111115677777764322111 11112345556666
Q ss_pred EEcCCCc--cHHHHHhcCCCCCeeeccCCCCCCHhHHHhcCCCCcEecccCCc
Q 045871 449 LSLWGCS--GLDALCLNCPELNDLNLNSCRNLRPETLLLHCPRLESVHASGCQ 499 (541)
Q Consensus 449 L~L~~~~--~l~~l~~~~~~L~~L~L~~c~~~~d~~l~~~~p~L~~L~l~~C~ 499 (541)
|+|+++. .+..-+..+++|++|+|++|....-..-+..+++|+.|+|+++.
T Consensus 275 L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 275 LDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp EECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred EeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 6666553 22222234566666666665421111114456666666666654
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.60 E-value=0.003 Score=60.03 Aligned_cols=89 Identities=19% Similarity=0.257 Sum_probs=62.3
Q ss_pred HHHHHhcCCCCCEEEcCCCCCCCH-HHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCH---
Q 045871 309 LALTAAGLRGLRMLSLVLGSEITD-ASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITS--- 384 (541)
Q Consensus 309 ~~l~~~~~~~L~~L~L~~~~~i~d-~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~--- 384 (541)
..++..++++|+.|+|+++ .+++ .++..+...+++|+.|+|++|.|++. ..+.....-+|++|+|.+.+ +..
T Consensus 162 l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Np-l~~~~~ 237 (267)
T 3rw6_A 162 LRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNS-LCDTFR 237 (267)
T ss_dssp HHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTST-TGGGCS
T ss_pred HHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCc-CccccC
Confidence 3444468999999999987 4554 23444555699999999999998875 22333211289999999954 542
Q ss_pred ---HHHHHHHhcCCCcceec
Q 045871 385 ---SGIQFATAQLPLLELMD 401 (541)
Q Consensus 385 ---~~l~~l~~~~~~L~~l~ 401 (541)
.....+...+|+|+.||
T Consensus 238 ~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 238 DQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp SHHHHHHHHHHHCTTCCEES
T ss_pred cchhHHHHHHHHCcccCeEC
Confidence 33345667899999998
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.32 E-value=0.00098 Score=58.91 Aligned_cols=37 Identities=19% Similarity=0.146 Sum_probs=17.8
Q ss_pred CCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCC
Q 045871 289 NCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLG 327 (541)
Q Consensus 289 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~ 327 (541)
.+++|+.|++++|.+.......+ ..+++|+.|+|+++
T Consensus 52 ~l~~L~~L~Ls~N~l~~l~~~~f--~~l~~L~~L~L~~N 88 (170)
T 3g39_A 52 RLTQLTRLDLDNNQLTVLPAGVF--DKLTQLTQLSLNDN 88 (170)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCSS
T ss_pred CcccCCEEECCCCCcCccChhhc--cCCCCCCEEECCCC
Confidence 45566666666665442211111 23455555555544
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.29 E-value=0.00047 Score=61.28 Aligned_cols=16 Identities=25% Similarity=0.303 Sum_probs=8.7
Q ss_pred CCCCCCeEEecCcccc
Q 045871 289 NCPRLQNIHIASIRLS 304 (541)
Q Consensus 289 ~~~~L~~L~l~~~~i~ 304 (541)
.+++|+.|+|++|.+.
T Consensus 55 ~l~~L~~L~Ls~N~l~ 70 (174)
T 2r9u_A 55 HLVNLQQLYFNSNKLT 70 (174)
T ss_dssp TCTTCCEEECCSSCCC
T ss_pred CCcCCCEEECCCCCCC
Confidence 4555555555555443
No 158
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.26 E-value=0.0011 Score=58.88 Aligned_cols=85 Identities=16% Similarity=0.216 Sum_probs=57.4
Q ss_pred CCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCC
Q 045871 290 CPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPN 369 (541)
Q Consensus 290 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~ 369 (541)
.++|+.|++++|.+.......+ ..+++|+.|+|+++ .++... ..+...+++|++|+|++|.|+......+... +
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l--~ 105 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVF--DHLVNLQQLYFNSN-KLTAIP-TGVFDKLTQLTQLDLNDNHLKSIPRGAFDNL--K 105 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--T
T ss_pred CCCCcEEEeCCCCccccCHHHh--cCCcCCCEEECCCC-CCCccC-hhHhCCcchhhEEECCCCccceeCHHHhccc--c
Confidence 3679999999997764322222 46899999999987 444311 1123458899999999998775322223333 6
Q ss_pred CccEEeccCCC
Q 045871 370 TLSRLLLALCP 380 (541)
Q Consensus 370 ~L~~L~l~~c~ 380 (541)
+|+.|+|++.+
T Consensus 106 ~L~~L~L~~N~ 116 (174)
T 2r9u_A 106 SLTHIYLYNNP 116 (174)
T ss_dssp TCSEEECCSSC
T ss_pred CCCEEEeCCCC
Confidence 89999999953
No 159
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.24 E-value=0.00052 Score=60.71 Aligned_cols=84 Identities=17% Similarity=0.156 Sum_probs=57.3
Q ss_pred CCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCC
Q 045871 290 CPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPN 369 (541)
Q Consensus 290 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~ 369 (541)
.++|+.|++++|.+.......+ ..+++|++|+|+++ .++... ......+++|++|+|++|.|+......+... +
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~--~~l~~L~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l--~ 102 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVF--DRLTQLTRLDLDNN-QLTVLP-AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL--K 102 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTT--TTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--T
T ss_pred CCCCcEEEcCCCcCCccChhhh--cCcccCCEEECCCC-CcCccC-hhhccCCCCCCEEECCCCccCEeCHHHhcCC--C
Confidence 3679999999998765422222 46889999999987 454211 1123458899999999998775333333333 6
Q ss_pred CccEEeccCC
Q 045871 370 TLSRLLLALC 379 (541)
Q Consensus 370 ~L~~L~l~~c 379 (541)
+|+.|+|++.
T Consensus 103 ~L~~L~L~~N 112 (170)
T 3g39_A 103 SLTHIWLLNN 112 (170)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEEeCCC
Confidence 8999999984
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.02 E-value=0.00047 Score=69.99 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=35.7
Q ss_pred HHHhCCCccEEEcCCC-ccH-HHHHhcCCCCCeeeccCCCCCCH--hHHHhcCCCCcEecccC
Q 045871 439 LIIKHCCLKKLSLWGC-SGL-DALCLNCPELNDLNLNSCRNLRP--ETLLLHCPRLESVHASG 497 (541)
Q Consensus 439 ~l~~~~~L~~L~L~~~-~~l-~~l~~~~~~L~~L~L~~c~~~~d--~~l~~~~p~L~~L~l~~ 497 (541)
.+..|.+|+.+.|... ..+ ...+.+|.+|+.++|..+ ++. ...+.+|.+|+.++|..
T Consensus 315 aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred hhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 3566778888877532 222 223456888888888644 332 34467788888888764
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.00 E-value=0.0055 Score=60.67 Aligned_cols=88 Identities=20% Similarity=0.192 Sum_probs=49.1
Q ss_pred CCCCcceEEecccCCCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHH
Q 045871 258 NCPNMREISLEFSRQENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAA 337 (541)
Q Consensus 258 ~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~ 337 (541)
.+++|++|+|+++..+.... ...+. .+++|+.|+|++|.+.......+ ..+++|+.|+|+++ .++... ..
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~-----~~~~~-~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N-~l~~~~-~~ 98 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLE-----LRDLR-GLGELRNLTIVKSGLRFVAPDAF--HFTPRLSRLNLSFN-ALESLS-WK 98 (347)
T ss_dssp SCSCCSEEECCSCSSCCEEC-----GGGSC-SCCCCSEEECCSSCCCEECTTGG--GSCSCCCEEECCSS-CCSCCC-ST
T ss_pred CCCCeeEEEccCCCCCCCcC-----hhHhc-cccCCCEEECCCCccceeCHHHh--cCCcCCCEEeCCCC-ccceeC-HH
Confidence 44667888887423332211 01122 67888888888887654322222 46788888888775 333211 01
Q ss_pred HHhcCCCccEEEecCCCCC
Q 045871 338 IASTYSKLELLDLSGSSIS 356 (541)
Q Consensus 338 l~~~~~~L~~L~L~~~~i~ 356 (541)
+...+ .|++|+|.+|.+.
T Consensus 99 ~~~~~-~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 99 TVQGL-SLQELVLSGNPLH 116 (347)
T ss_dssp TTCSC-CCCEEECCSSCCC
T ss_pred HcccC-CceEEEeeCCCcc
Confidence 12222 3888888887655
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.36 E-value=0.014 Score=57.69 Aligned_cols=78 Identities=17% Similarity=0.027 Sum_probs=49.2
Q ss_pred cceeecccchhhcHHHHHHHHhCCCccEEEcCCCc--cHH-HHHhcCCCCCeeeccCCCCCCH-hHHHhcCCCCcEeccc
Q 045871 421 DFELQKAFNNKLHLMYQKLIIKHCCLKKLSLWGCS--GLD-ALCLNCPELNDLNLNSCRNLRP-ETLLLHCPRLESVHAS 496 (541)
Q Consensus 421 l~~L~l~~c~~l~~~~~~~l~~~~~L~~L~L~~~~--~l~-~l~~~~~~L~~L~L~~c~~~~d-~~l~~~~p~L~~L~l~ 496 (541)
+++|+|+++++++......+..+++|+.|+|+++. ++. ..+.++++|+.|+|++|....- ..++...+ |+.|+|.
T Consensus 33 L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~ 111 (347)
T 2ifg_A 33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLS 111 (347)
T ss_dssp CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECC
T ss_pred eeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEee
Confidence 45666665555553333446677888888888874 332 3446788888888888864322 22333333 8888888
Q ss_pred CCc
Q 045871 497 GCQ 499 (541)
Q Consensus 497 ~C~ 499 (541)
+++
T Consensus 112 ~N~ 114 (347)
T 2ifg_A 112 GNP 114 (347)
T ss_dssp SSC
T ss_pred CCC
Confidence 765
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.25 E-value=0.011 Score=60.06 Aligned_cols=157 Identities=13% Similarity=0.126 Sum_probs=82.9
Q ss_pred CccEEEeeecCCcccccCHHHHHHHHhhCCCCceeeecC---------ccCCCCcceEEecccCCCCCchhHHHHHHHHh
Q 045871 217 NLESMEIYTSGSAVNRITGDELGRFVADKRCLASLKMEG---------IFNCPNMREISLEFSRQENDSTDLTTMADGLG 287 (541)
Q Consensus 217 ~L~~L~L~~c~~~~~~it~~~l~~~~~~~~~L~~L~l~~---------~~~~~~L~~L~L~~~~~~~~~~~l~~l~~~l~ 287 (541)
+|+.++|... +..|.... +..|.+|+.+.+.. ...+.+|+++.|... +.... ...+
T Consensus 158 ~L~~i~lp~~---l~~I~~~a----F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~------~~aF 222 (401)
T 4fdw_A 158 TVQEIVFPST---LEQLKEDI----FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIG------SQAF 222 (401)
T ss_dssp CCCEEECCTT---CCEECSST----TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEEC------TTTT
T ss_pred CceEEEeCCC---ccEehHHH----hhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--hheeh------hhHh
Confidence 5666666531 12233222 34456666666643 234677888887642 21110 1122
Q ss_pred cCCCCCCeEEecCc--ccchHHHHHHHHhcCCCCCEEEcCCC-CCCCHHHHHHHHhcCCCccEEEecCCCCCh-----HH
Q 045871 288 RNCPRLQNIHIASI--RLSHSVVLALTAAGLRGLRMLSLVLG-SEITDASVAAIASTYSKLELLDLSGSSISD-----SG 359 (541)
Q Consensus 288 ~~~~~L~~L~l~~~--~i~~~~~~~l~~~~~~~L~~L~L~~~-~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~-----~~ 359 (541)
..|++|+.+.+..+ .+...++ .+ .+|+.+.|... ..|.+. ...+|++|+.+++.++.+.. -+
T Consensus 223 ~~~~~L~~l~l~~~l~~I~~~aF-----~~-~~L~~i~lp~~i~~I~~~----aF~~c~~L~~l~l~~~~~~~~~~~~I~ 292 (401)
T 4fdw_A 223 LKTSQLKTIEIPENVSTIGQEAF-----RE-SGITTVKLPNGVTNIASR----AFYYCPELAEVTTYGSTFNDDPEAMIH 292 (401)
T ss_dssp TTCTTCCCEECCTTCCEECTTTT-----TT-CCCSEEEEETTCCEECTT----TTTTCTTCCEEEEESSCCCCCTTCEEC
T ss_pred hCCCCCCEEecCCCccCcccccc-----cc-CCccEEEeCCCccEEChh----HhhCCCCCCEEEeCCccccCCcccEEC
Confidence 37888888888764 1222221 12 57888888543 122222 23458889999988764431 11
Q ss_pred HHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeccc
Q 045871 360 IGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMDCG 403 (541)
Q Consensus 360 l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~~~ 403 (541)
-..+ ..| .+|+.+.|.. .++.-+ .....+|++|+.+++.
T Consensus 293 ~~aF-~~c-~~L~~l~l~~--~i~~I~-~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 293 PYCL-EGC-PKLARFEIPE--SIRILG-QGLLGGNRKVTQLTIP 331 (401)
T ss_dssp TTTT-TTC-TTCCEECCCT--TCCEEC-TTTTTTCCSCCEEEEC
T ss_pred HHHh-hCC-ccCCeEEeCC--ceEEEh-hhhhcCCCCccEEEEC
Confidence 1122 233 5788888875 233211 1223568889988754
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=84.44 E-value=0.59 Score=46.79 Aligned_cols=113 Identities=23% Similarity=0.338 Sum_probs=60.1
Q ss_pred hhCCCCceeeecC---------ccCCCCcceEEecccC-CCCCchhHHHHHHHHhcCCCCCCeEEecCc--ccchHHHHH
Q 045871 243 ADKRCLASLKMEG---------IFNCPNMREISLEFSR-QENDSTDLTTMADGLGRNCPRLQNIHIASI--RLSHSVVLA 310 (541)
Q Consensus 243 ~~~~~L~~L~l~~---------~~~~~~L~~L~L~~~~-~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~--~i~~~~~~~ 310 (541)
..|..|+.+.+.. +..|++|+.+.+...- .+.+ ..+..|.+|+.+.|... .|.+.++
T Consensus 262 ~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~---------~aF~~c~~L~~i~lp~~v~~I~~~aF-- 330 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPE---------SVFAGCISLKSIDIPEGITQILDDAF-- 330 (394)
T ss_dssp TTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECT---------TTTTTCTTCCEEECCTTCCEECTTTT--
T ss_pred eecccccEEecccccceecCcccccccccccccCCCcccccCc---------eeecCCCCcCEEEeCCcccEehHhHh--
Confidence 3455556555533 4567888888876321 1111 12337888888888654 2333321
Q ss_pred HHHhcCCCCCEEEcCCC-CCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccC
Q 045871 311 LTAAGLRGLRMLSLVLG-SEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLAL 378 (541)
Q Consensus 311 l~~~~~~~L~~L~L~~~-~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~ 378 (541)
.+|.+|+.+.|... ..|.+.+ ..+|.+|+.+++.++.. ....+.. | ..|+.|.+..
T Consensus 331 ---~~C~~L~~i~ip~sv~~I~~~a----F~~C~~L~~i~~~~~~~---~~~~~~~-~-~~L~~i~i~~ 387 (394)
T 4gt6_A 331 ---AGCEQLERIAIPSSVTKIPESA----FSNCTALNNIEYSGSRS---QWNAIST-D-SGLQNLPVAP 387 (394)
T ss_dssp ---TTCTTCCEEEECTTCCBCCGGG----GTTCTTCCEEEESSCHH---HHHTCBC-C-CCC-------
T ss_pred ---hCCCCCCEEEECcccCEEhHhH----hhCCCCCCEEEECCcee---ehhhhhc-c-CCCCEEEeCC
Confidence 57888998888543 3344333 34588899998887521 1222222 2 4677776643
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=82.35 E-value=1.4 Score=43.91 Aligned_cols=120 Identities=22% Similarity=0.258 Sum_probs=71.0
Q ss_pred ccCCCCcceEEecccCC-CCCchhHHHHHHHHhcCCCCCCeEEecCc--ccchHHHHHHHHhcCCCCCEEEcCCC-CCCC
Q 045871 256 IFNCPNMREISLEFSRQ-ENDSTDLTTMADGLGRNCPRLQNIHIASI--RLSHSVVLALTAAGLRGLRMLSLVLG-SEIT 331 (541)
Q Consensus 256 ~~~~~~L~~L~L~~~~~-~~~~~~l~~l~~~l~~~~~~L~~L~l~~~--~i~~~~~~~l~~~~~~~L~~L~L~~~-~~i~ 331 (541)
+..|..|+.+.+..... +... ....|..|+.+.+... .+.+..+ .+|.+|+.+.|... ..|.
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~---------aF~~c~~L~~i~l~~~i~~I~~~aF-----~~c~~L~~i~lp~~v~~I~ 326 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTG---------AFMNCPALQDIEFSSRITELPESVF-----AGCISLKSIDIPEGITQIL 326 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTT---------TTTTCTTCCEEECCTTCCEECTTTT-----TTCTTCCEEECCTTCCEEC
T ss_pred eeecccccEEecccccceecCc---------ccccccccccccCCCcccccCceee-----cCCCCcCEEEeCCcccEeh
Confidence 66889999999864221 1211 2237899999999754 2333221 57999999999653 3344
Q ss_pred HHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccCCCCCCHHHHHHHHhcCCCcceec
Q 045871 332 DASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLALCPNITSSGIQFATAQLPLLELMD 401 (541)
Q Consensus 332 d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~l~ 401 (541)
+.. ..+|.+|+.+.|..+ ++.-|-.++.. | .+|+.+.+.+.. ..+ .....|..|+.+.
T Consensus 327 ~~a----F~~C~~L~~i~ip~s-v~~I~~~aF~~-C-~~L~~i~~~~~~----~~~-~~~~~~~~L~~i~ 384 (394)
T 4gt6_A 327 DDA----FAGCEQLERIAIPSS-VTKIPESAFSN-C-TALNNIEYSGSR----SQW-NAISTDSGLQNLP 384 (394)
T ss_dssp TTT----TTTCTTCCEEEECTT-CCBCCGGGGTT-C-TTCCEEEESSCH----HHH-HTCBCCCCC----
T ss_pred HhH----hhCCCCCCEEEECcc-cCEEhHhHhhC-C-CCCCEEEECCce----eeh-hhhhccCCCCEEE
Confidence 333 346999999999764 33322233443 4 689999998731 112 1223466666654
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=76.07 E-value=0.26 Score=49.45 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=22.9
Q ss_pred hcCCCCCEEEcCCC-CCCCHHHHHHHHhcCCCccEEEecCC
Q 045871 314 AGLRGLRMLSLVLG-SEITDASVAAIASTYSKLELLDLSGS 353 (541)
Q Consensus 314 ~~~~~L~~L~L~~~-~~i~d~~l~~l~~~~~~L~~L~L~~~ 353 (541)
.+|.+|+.+.|... ..|.+.+ ..+|.+|+.++|..+
T Consensus 68 ~~c~~L~~i~lp~~i~~I~~~a----F~~c~~L~~i~lp~~ 104 (394)
T 4fs7_A 68 QGCRKVTEIKIPSTVREIGEFA----FENCSKLEIINIPDS 104 (394)
T ss_dssp TTCTTEEEEECCTTCCEECTTT----TTTCTTCCEECCCTT
T ss_pred hCCCCceEEEeCCCccCcchhH----hhCCCCCcEEEeCCC
Confidence 47888998888533 2333322 235888888888653
No 167
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.69 E-value=2.2 Score=29.24 Aligned_cols=15 Identities=53% Similarity=1.263 Sum_probs=12.0
Q ss_pred CcccCCCCCCCCCCCcc
Q 045871 32 GSYNCGRCGQPKKGHSC 48 (541)
Q Consensus 32 ~~~~~~~~~~~~~~~~~ 48 (541)
+.|.|++||++ ||-.
T Consensus 6 ~~~~C~kCGk~--GH~~ 20 (55)
T 2ysa_A 6 SGYTCFRCGKP--GHYI 20 (55)
T ss_dssp SSCCCTTTCCT--TSCG
T ss_pred CCCccccCCCc--Cccc
Confidence 57999999996 6765
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=65.96 E-value=2.3 Score=42.04 Aligned_cols=104 Identities=14% Similarity=0.168 Sum_probs=55.2
Q ss_pred ccCCCCcceEEecccC-CCCCchhHHHHHHHHhcCCCCCCeEEecCcccchHHHHHHHHhcCCCCCEEEcCCC--CCCCH
Q 045871 256 IFNCPNMREISLEFSR-QENDSTDLTTMADGLGRNCPRLQNIHIASIRLSHSVVLALTAAGLRGLRMLSLVLG--SEITD 332 (541)
Q Consensus 256 ~~~~~~L~~L~L~~~~-~~~~~~~l~~l~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~L~~~--~~i~d 332 (541)
...|..|+.+.+...- .+.+. ....|..|+.+.+... +..-+..+. .+|.+|+.+.+... ..|.+
T Consensus 236 f~~~~~L~~i~lp~~v~~I~~~---------aF~~~~~l~~i~l~~~-i~~i~~~aF--~~c~~L~~i~l~~~~i~~I~~ 303 (379)
T 4h09_A 236 FYGMKALDEIAIPKNVTSIGSF---------LLQNCTALKTLNFYAK-VKTVPYLLC--SGCSNLTKVVMDNSAIETLEP 303 (379)
T ss_dssp TTTCSSCCEEEECTTCCEECTT---------TTTTCTTCCEEEECCC-CSEECTTTT--TTCTTCCEEEECCTTCCEECT
T ss_pred ccCCccceEEEcCCCccEeCcc---------ccceeehhcccccccc-ceecccccc--ccccccccccccccccceehh
Confidence 4466777777775421 11111 2226777888887544 111111111 46788888888643 23333
Q ss_pred HHHHHHHhcCCCccEEEecCCCCChHHHHHHHhhCCCCccEEeccC
Q 045871 333 ASVAAIASTYSKLELLDLSGSSISDSGIGMICNVFPNTLSRLLLAL 378 (541)
Q Consensus 333 ~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~ 378 (541)
.. ..+|.+|+.++|..+ ++.-+-.++.. | .+|+.+.|..
T Consensus 304 ~a----F~~c~~L~~i~lp~~-l~~I~~~aF~~-C-~~L~~i~ip~ 342 (379)
T 4h09_A 304 RV----FMDCVKLSSVTLPTA-LKTIQVYAFKN-C-KALSTISYPK 342 (379)
T ss_dssp TT----TTTCTTCCEEECCTT-CCEECTTTTTT-C-TTCCCCCCCT
T ss_pred hh----hcCCCCCCEEEcCcc-ccEEHHHHhhC-C-CCCCEEEECC
Confidence 22 245888888888653 32222223333 3 5788887754
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=65.88 E-value=1.6 Score=43.12 Aligned_cols=100 Identities=17% Similarity=0.167 Sum_probs=54.4
Q ss_pred CCCCCCeEEecCc--ccchHHHHHHHHhcCCCCCEEEcCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhh
Q 045871 289 NCPRLQNIHIASI--RLSHSVVLALTAAGLRGLRMLSLVLGSEITDASVAAIASTYSKLELLDLSGSSISDSGIGMICNV 366 (541)
Q Consensus 289 ~~~~L~~L~l~~~--~i~~~~~~~l~~~~~~~L~~L~L~~~~~i~d~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~ 366 (541)
.|..|+.+.+... .+.+.. . .+|..|+.+.+... ++.-+- ....+|.+|+.+.+.++.|+.-+-.++..
T Consensus 238 ~~~~L~~i~lp~~v~~I~~~a---F--~~~~~l~~i~l~~~--i~~i~~-~aF~~c~~L~~i~l~~~~i~~I~~~aF~~- 308 (379)
T 4h09_A 238 GMKALDEIAIPKNVTSIGSFL---L--QNCTALKTLNFYAK--VKTVPY-LLCSGCSNLTKVVMDNSAIETLEPRVFMD- 308 (379)
T ss_dssp TCSSCCEEEECTTCCEECTTT---T--TTCTTCCEEEECCC--CSEECT-TTTTTCTTCCEEEECCTTCCEECTTTTTT-
T ss_pred CCccceEEEcCCCccEeCccc---c--ceeehhcccccccc--ceeccc-cccccccccccccccccccceehhhhhcC-
Confidence 6777888877654 122221 1 46777888877543 221111 12345788888888766554433333333
Q ss_pred CCCCccEEeccC-CCCCCHHHHHHHHhcCCCcceecc
Q 045871 367 FPNTLSRLLLAL-CPNITSSGIQFATAQLPLLELMDC 402 (541)
Q Consensus 367 ~~~~L~~L~l~~-c~~l~~~~l~~l~~~~~~L~~l~~ 402 (541)
| .+|+.+.|.. ...|.+. ...+|++|+.+.+
T Consensus 309 c-~~L~~i~lp~~l~~I~~~----aF~~C~~L~~i~i 340 (379)
T 4h09_A 309 C-VKLSSVTLPTALKTIQVY----AFKNCKALSTISY 340 (379)
T ss_dssp C-TTCCEEECCTTCCEECTT----TTTTCTTCCCCCC
T ss_pred C-CCCCEEEcCccccEEHHH----HhhCCCCCCEEEE
Confidence 3 5788888853 2223322 2245777777764
No 170
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=55.47 E-value=4.2 Score=26.47 Aligned_cols=12 Identities=33% Similarity=0.938 Sum_probs=8.6
Q ss_pred cccCCCCCCCCC
Q 045871 33 SYNCGRCGQPKK 44 (541)
Q Consensus 33 ~~~~~~~~~~~~ 44 (541)
-|.|+|||.-+.
T Consensus 3 iY~C~rCg~~fs 14 (48)
T 4ayb_P 3 VYRCGKCWKTFT 14 (48)
T ss_dssp --CCCCTTTTCC
T ss_pred EEEeeccCCCcc
Confidence 599999999665
No 171
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.75 E-value=13 Score=25.43 Aligned_cols=21 Identities=38% Similarity=0.714 Sum_probs=15.8
Q ss_pred CCCCCCC-CCCcccCCCCCCCC
Q 045871 23 FNLRPSK-RRGSYNCGRCGQPK 43 (541)
Q Consensus 23 ~~~~~~~-~~~~~~~~~~~~~~ 43 (541)
.+++|+| .+|+-+|-+||.+.
T Consensus 7 ~~~~~r~~grg~~rC~vcGr~~ 28 (56)
T 3j20_P 7 NKRKPRKFGKGARRCIRCGQYG 28 (56)
T ss_dssp SCCSCCSSSSTTCCCSSSCCSS
T ss_pred cCCCCcccCCCceEeecCCCCc
Confidence 4555654 68889999999974
No 172
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=42.35 E-value=8.5 Score=31.49 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=15.0
Q ss_pred CccEEEecCCCCChHHHHHHHhhCCCCccEEeccC
Q 045871 344 KLELLDLSGSSISDSGIGMICNVFPNTLSRLLLAL 378 (541)
Q Consensus 344 ~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~l~~ 378 (541)
+|++|+|++|.|+.-....+... .+|+.|+|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l--~~L~~L~L~~ 64 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDAL--PALRTAHLGA 64 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGC--TTCCEEECCS
T ss_pred CCCEEECCCCcCCccChhhhhhc--cccCEEEecC
Confidence 45555555554443222222222 3555555555
No 173
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=39.93 E-value=11 Score=20.05 Aligned_cols=13 Identities=31% Similarity=0.818 Sum_probs=9.9
Q ss_pred cccCCCCCCCCCC
Q 045871 33 SYNCGRCGQPKKG 45 (541)
Q Consensus 33 ~~~~~~~~~~~~~ 45 (541)
+|.|..||..+..
T Consensus 1 ~~~C~~C~k~f~~ 13 (27)
T 1znf_A 1 XYKCGLCERSFVE 13 (27)
T ss_dssp -CBCSSSCCBCSS
T ss_pred CccCCCCCCcCCC
Confidence 5899999987763
No 174
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=38.50 E-value=12 Score=20.51 Aligned_cols=13 Identities=31% Similarity=0.871 Sum_probs=11.0
Q ss_pred cccCCCCCCCCCC
Q 045871 33 SYNCGRCGQPKKG 45 (541)
Q Consensus 33 ~~~~~~~~~~~~~ 45 (541)
+|.|..||..+..
T Consensus 2 ~~~C~~C~k~f~~ 14 (30)
T 1paa_A 2 AYACGLCNRAFTR 14 (30)
T ss_dssp CSBCTTTCCBCSS
T ss_pred CcCCcccCcccCC
Confidence 6999999998763
No 175
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=37.89 E-value=7.5 Score=21.11 Aligned_cols=13 Identities=31% Similarity=0.894 Sum_probs=10.5
Q ss_pred CcccCCCCCCCCC
Q 045871 32 GSYNCGRCGQPKK 44 (541)
Q Consensus 32 ~~~~~~~~~~~~~ 44 (541)
++|.|..||..+.
T Consensus 1 ~~~~C~~C~k~f~ 13 (29)
T 2m0f_A 1 GPLKCRECGKQFT 13 (29)
T ss_dssp CCEECTTTSCEES
T ss_pred CCccCCCCCCccC
Confidence 4799999998765
No 176
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=36.57 E-value=16 Score=19.57 Aligned_cols=12 Identities=17% Similarity=0.537 Sum_probs=10.4
Q ss_pred cccCCCCCCCCC
Q 045871 33 SYNCGRCGQPKK 44 (541)
Q Consensus 33 ~~~~~~~~~~~~ 44 (541)
+|.|..||..+.
T Consensus 2 ~~~C~~C~~~f~ 13 (29)
T 2m0e_A 2 EHKCPHCDKKFN 13 (29)
T ss_dssp CCCCSSCCCCCC
T ss_pred CCcCCCCCcccC
Confidence 699999999876
No 177
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=36.40 E-value=22 Score=28.98 Aligned_cols=34 Identities=24% Similarity=0.158 Sum_probs=15.8
Q ss_pred CccEEEcCCCc--cH-HHHHhcCCCCCeeeccCCCCC
Q 045871 445 CLKKLSLWGCS--GL-DALCLNCPELNDLNLNSCRNL 478 (541)
Q Consensus 445 ~L~~L~L~~~~--~l-~~l~~~~~~L~~L~L~~c~~~ 478 (541)
+|++|+|+++. .+ ...+...++|+.|+|.+|...
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 45566665552 11 122334455555555555443
No 178
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=35.16 E-value=14 Score=19.85 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=10.8
Q ss_pred cccCCCCCCCCCC
Q 045871 33 SYNCGRCGQPKKG 45 (541)
Q Consensus 33 ~~~~~~~~~~~~~ 45 (541)
+|.|..||..+..
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 1ard_A 2 SFVCEVCTRAFAR 14 (29)
T ss_dssp CCBCTTTCCBCSS
T ss_pred CeECCCCCcccCC
Confidence 6999999998763
No 179
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=40.93 E-value=8.2 Score=20.48 Aligned_cols=12 Identities=42% Similarity=0.974 Sum_probs=10.3
Q ss_pred cccCCCCCCCCC
Q 045871 33 SYNCGRCGQPKK 44 (541)
Q Consensus 33 ~~~~~~~~~~~~ 44 (541)
+|.|..||..+.
T Consensus 2 p~~C~~C~k~f~ 13 (26)
T 2lvu_A 2 PYVCERCGKRFV 13 (26)
Confidence 699999998876
No 180
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=33.37 E-value=16 Score=21.39 Aligned_cols=15 Identities=13% Similarity=0.481 Sum_probs=12.1
Q ss_pred CCcccCCCCCCCCCC
Q 045871 31 RGSYNCGRCGQPKKG 45 (541)
Q Consensus 31 ~~~~~~~~~~~~~~~ 45 (541)
..+|.|..||..|..
T Consensus 9 ~k~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 9 IKPFQCPDCDRSFSR 23 (37)
T ss_dssp SSSBCCTTTCCCBSS
T ss_pred CCCccCCCCCcccCc
Confidence 347999999998763
No 181
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=29.75 E-value=23 Score=19.04 Aligned_cols=13 Identities=23% Similarity=0.659 Sum_probs=10.9
Q ss_pred cccCCCCCCCCCC
Q 045871 33 SYNCGRCGQPKKG 45 (541)
Q Consensus 33 ~~~~~~~~~~~~~ 45 (541)
+|.|..||..+..
T Consensus 2 ~~~C~~C~k~f~~ 14 (30)
T 1klr_A 2 TYQCQYCEFRSAD 14 (30)
T ss_dssp CCCCSSSSCCCSC
T ss_pred CccCCCCCCccCC
Confidence 6999999998764
No 182
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=27.81 E-value=26 Score=19.94 Aligned_cols=13 Identities=15% Similarity=0.513 Sum_probs=11.1
Q ss_pred cccCCCCCCCCCC
Q 045871 33 SYNCGRCGQPKKG 45 (541)
Q Consensus 33 ~~~~~~~~~~~~~ 45 (541)
||.|..||..+..
T Consensus 2 p~~C~~C~k~F~~ 14 (33)
T 1rim_A 2 KFACPECPKRFMR 14 (33)
T ss_dssp CCCCSSSCCCCSS
T ss_pred cccCCCCCchhCC
Confidence 6999999998874
No 183
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.64 E-value=8.9 Score=20.72 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=10.6
Q ss_pred cccCCCCCCCCCC
Q 045871 33 SYNCGRCGQPKKG 45 (541)
Q Consensus 33 ~~~~~~~~~~~~~ 45 (541)
+|.|..||..+..
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvg_A 3 PYRCPLCRAGCPS 15 (27)
T ss_dssp TEEETTTTEEESC
T ss_pred CcCCCCCCcccCC
Confidence 6999999987763
No 184
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.48 E-value=15 Score=19.59 Aligned_cols=12 Identities=25% Similarity=0.850 Sum_probs=10.2
Q ss_pred cccCCCCCCCCC
Q 045871 33 SYNCGRCGQPKK 44 (541)
Q Consensus 33 ~~~~~~~~~~~~ 44 (541)
+|.|..||..+.
T Consensus 3 ~~~C~~C~k~f~ 14 (27)
T 2kvh_A 3 PFSCSLCPQRSR 14 (27)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCcChhhC
Confidence 799999998776
No 185
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.28 E-value=15 Score=19.90 Aligned_cols=13 Identities=31% Similarity=0.882 Sum_probs=10.7
Q ss_pred CcccCCCCCCCCC
Q 045871 32 GSYNCGRCGQPKK 44 (541)
Q Consensus 32 ~~~~~~~~~~~~~ 44 (541)
.+|.|..||..+.
T Consensus 2 k~~~C~~C~~~f~ 14 (30)
T 2m0d_A 2 KPYQCDYCGRSFS 14 (30)
T ss_dssp CCEECTTTCCEES
T ss_pred cCccCCCCCcccC
Confidence 3799999998776
No 186
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.21 E-value=15 Score=19.63 Aligned_cols=13 Identities=31% Similarity=0.772 Sum_probs=10.6
Q ss_pred cccCCCCCCCCCC
Q 045871 33 SYNCGRCGQPKKG 45 (541)
Q Consensus 33 ~~~~~~~~~~~~~ 45 (541)
+|.|..||..+..
T Consensus 3 ~~~C~~C~k~f~~ 15 (28)
T 2kvf_A 3 PYSCSVCGKRFSL 15 (28)
T ss_dssp SEECSSSCCEESC
T ss_pred CccCCCCCcccCC
Confidence 6999999987763
No 187
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=25.65 E-value=16 Score=19.73 Aligned_cols=13 Identities=15% Similarity=0.513 Sum_probs=10.3
Q ss_pred cccCCCCCCCCCC
Q 045871 33 SYNCGRCGQPKKG 45 (541)
Q Consensus 33 ~~~~~~~~~~~~~ 45 (541)
+|.|..||..+..
T Consensus 2 ~~~C~~C~k~f~~ 14 (29)
T 1rik_A 2 KFACPECPKRFMR 14 (29)
T ss_dssp CEECSSSSCEESC
T ss_pred CccCCCCCchhCC
Confidence 6899999987763
No 188
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=24.74 E-value=21 Score=20.13 Aligned_cols=12 Identities=17% Similarity=0.584 Sum_probs=10.1
Q ss_pred cccCCCCCCCCC
Q 045871 33 SYNCGRCGQPKK 44 (541)
Q Consensus 33 ~~~~~~~~~~~~ 44 (541)
+|.|..||..+.
T Consensus 2 p~~C~~C~k~f~ 13 (32)
T 2kfq_A 2 AFACPACPKRFM 13 (32)
T ss_dssp CSSSSSSCTTHH
T ss_pred CCCCCCCCcccC
Confidence 699999998765
No 189
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=23.51 E-value=19 Score=20.70 Aligned_cols=14 Identities=14% Similarity=0.327 Sum_probs=11.7
Q ss_pred CcccCCCCCCCCCC
Q 045871 32 GSYNCGRCGQPKKG 45 (541)
Q Consensus 32 ~~~~~~~~~~~~~~ 45 (541)
.+|.|..||..+..
T Consensus 6 k~~~C~~C~k~f~~ 19 (35)
T 1srk_A 6 RPFVCRICLSAFTT 19 (35)
T ss_dssp SCEECSSSCCEESS
T ss_pred cCeeCCCCCcccCC
Confidence 47999999998864
No 190
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.22 E-value=30 Score=19.80 Aligned_cols=14 Identities=29% Similarity=0.581 Sum_probs=11.7
Q ss_pred CcccCCCCCCCCCC
Q 045871 32 GSYNCGRCGQPKKG 45 (541)
Q Consensus 32 ~~~~~~~~~~~~~~ 45 (541)
.+|.|..||..|..
T Consensus 8 ~~~~C~~C~k~f~~ 21 (36)
T 2elr_A 8 KTHLCDMCGKKFKS 21 (36)
T ss_dssp SSCBCTTTCCBCSS
T ss_pred CCeecCcCCCCcCc
Confidence 47999999998863
No 191
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=22.86 E-value=1.4e+02 Score=20.24 Aligned_cols=18 Identities=28% Similarity=0.602 Sum_probs=11.9
Q ss_pred CCCCcccCCCCCCCCCCCcc
Q 045871 29 KRRGSYNCGRCGQPKKGHSC 48 (541)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~ 48 (541)
.......|+.||. +||-.
T Consensus 19 ~~~~~~~C~~Cge--~GH~a 36 (56)
T 1u6p_A 19 SQLDRDQCAYCKE--KGHWA 36 (56)
T ss_dssp TTCCTTBCSSSCC--BSSCG
T ss_pred CCCCCCcceeCCC--CCccc
Confidence 4455678999987 55543
No 192
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.29 E-value=18 Score=19.53 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=10.1
Q ss_pred cccCCCCCCCCC
Q 045871 33 SYNCGRCGQPKK 44 (541)
Q Consensus 33 ~~~~~~~~~~~~ 44 (541)
+|.|..||..+.
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 2lvt_A 2 PCQCVMCGKAFT 13 (29)
Confidence 689999998776
No 193
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.58 E-value=40 Score=20.41 Aligned_cols=14 Identities=29% Similarity=0.878 Sum_probs=12.1
Q ss_pred CcccCCCCCCCCCC
Q 045871 32 GSYNCGRCGQPKKG 45 (541)
Q Consensus 32 ~~~~~~~~~~~~~~ 45 (541)
.+|.|..||..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (44)
T 2en7_A 11 KPYVCNECGKAFRS 24 (44)
T ss_dssp SSSCCTTTCCCCSS
T ss_pred cCeECCCCCCccCC
Confidence 47999999998874
No 194
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=20.43 E-value=67 Score=24.17 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=17.7
Q ss_pred CCCCCCCCCCcccCCCCCCCCCC
Q 045871 23 FNLRPSKRRGSYNCGRCGQPKKG 45 (541)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~ 45 (541)
....|.+...+|.|..||..+..
T Consensus 7 ~~~~~~~~~~~~~C~~C~~~f~~ 29 (106)
T 2ee8_A 7 GGRLPSKTKKEFICKFCGRHFTK 29 (106)
T ss_dssp CCCCCCCCCCCCBCSSSCCBCSS
T ss_pred CCcCCcCCCcCeECCCCCCccCC
Confidence 34556677889999999998874
No 195
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=20.15 E-value=40 Score=23.66 Aligned_cols=14 Identities=29% Similarity=0.688 Sum_probs=10.8
Q ss_pred CCcccCCCCCCCCC
Q 045871 31 RGSYNCGRCGQPKK 44 (541)
Q Consensus 31 ~~~~~~~~~~~~~~ 44 (541)
-..|.|+.||....
T Consensus 19 ~v~Y~C~~Cg~~~~ 32 (63)
T 3h0g_L 19 TMIYLCADCGARNT 32 (63)
T ss_dssp CCCCBCSSSCCBCC
T ss_pred CeEEECCCCCCeee
Confidence 46699999998543
Done!