BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045873
         (868 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1V5N|A Chain A, Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical
           Protein From Arabidopsis Thaliana
          Length = 89

 Score = 41.2 bits (95), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 565 ESCAELPQEVRHPFHPRHSLTVQENTFQSRYFCDACRFDVKPGLRYRCDECDFDLHLEC 623
           E   + P++V+H  H  H L   E T    Y CD C  +      Y CDECDFDLH +C
Sbjct: 21  EIAKDWPKKVKHVLHEEHEL---ELTRVQVYTCDKCEEEGTI-WSYHCDECDFDLHAKC 75



 Score = 40.4 bits (93), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 207 CSELPQQVRHPFHPCHSLTLQNNDLSEWYRCDACRSYIDLGMRYRCDDCDFDMHPECM 264
             + P++V+H  H  H L L    +   Y CD C     +   Y CD+CDFD+H +C 
Sbjct: 23  AKDWPKKVKHVLHEEHELELTRVQV---YTCDKCEEEGTI-WSYHCDECDFDLHAKCA 76


>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
           38
          Length = 75

 Score = 30.4 bits (67), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 648 KSKCEACRCDIEGTFFLRCVECKLNFHVQCGPDWL 682
           ++ C  C CD E    LR + C   FH +C   WL
Sbjct: 23  QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWL 57


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.486 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,830,334
Number of Sequences: 62578
Number of extensions: 1319951
Number of successful extensions: 3827
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3742
Number of HSP's gapped (non-prelim): 110
length of query: 868
length of database: 14,973,337
effective HSP length: 107
effective length of query: 761
effective length of database: 8,277,491
effective search space: 6299170651
effective search space used: 6299170651
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)