BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045873
(868 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P75289|ULAF_MYCPN Probable L-ribulose-5-phosphate 4-epimerase UlaF OS=Mycoplasma
pneumoniae (strain ATCC 29342 / M129) GN=ulaF PE=3 SV=1
Length = 242
Score = 40.4 bits (93), Expect = 0.067, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 367 PCYGCSECDQYYAHVRCVITEIHLDNTERHKHFSHHHLLVLLENERNDDIECHACENLII 426
PC G + D ++ + C L ++E + + H+ LV+LE+ +N+ ++ +AC +++
Sbjct: 116 PCLGTTHADNFFGPIPCTRA---LSDSEINGAYEHNTGLVILEHLKNNQVDVNACAAILV 172
Query: 427 QGHSAY 432
+ H ++
Sbjct: 173 KEHGSF 178
>sp|Q7Y0E8|NRX11_ORYSJ Probable nucleoredoxin 1-1 OS=Oryza sativa subsp. japonica
GN=Os03g0405500 PE=2 SV=1
Length = 569
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 562 NIHESCAELPQEVRHPFHPRHSLTVQENTFQSRYFCDACRFDVKPGLRYRCDECDFDLHL 621
I E P +++H H H L + T Y CD C ++ YRC ECDFDLH
Sbjct: 482 KIDEMAKGWPGKLKHELHDEHELVLTRCT---TYGCDGCD-EMGSSWSYRCRECDFDLHP 537
Query: 622 EC 623
+C
Sbjct: 538 KC 539
Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 203 IHKSCSELPQQVRHPFHPCHSLTLQNNDLSEWYRCDACRSYIDLGMRYRCDDCDFDMHPE 262
I + P +++H H H L L Y CD C + YRC +CDFD+HP+
Sbjct: 483 IDEMAKGWPGKLKHELHDEHELVLTRCTT---YGCDGCDE-MGSSWSYRCRECDFDLHPK 538
Query: 263 C 263
C
Sbjct: 539 C 539
>sp|O80763|NRX1_ARATH Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1
SV=1
Length = 578
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 565 ESCAELPQEVRHPFHPRHSLTVQENTFQSRYFCDACRFDVKPGLRYRCDECDFDLHLEC 623
E + P++V+H H H L E T Y CD C + Y CDECDFDLH +C
Sbjct: 489 EIAKDWPKKVKHVLHEEHEL---ELTRVQVYTCDKCE-EEGTIWSYHCDECDFDLHAKC 543
Score = 38.5 bits (88), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 207 CSELPQQVRHPFHPCHSLTLQNNDLSEWYRCDACRSYIDLGMRYRCDDCDFDMHPEC 263
+ P++V+H H H L L + Y CD C + Y CD+CDFD+H +C
Sbjct: 491 AKDWPKKVKHVLHEEHELELTRVQV---YTCDKCEEEGTI-WSYHCDECDFDLHAKC 543
>sp|Q7Y0F2|NRX12_ORYSJ Probable nucleoredoxin 1-2 OS=Oryza sativa subsp. japonica
GN=Os03g0405900 PE=2 SV=1
Length = 581
Score = 37.7 bits (86), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 203 IHKSCSELPQQVRHPFHPCHSLTLQNNDLSEWYRCDACRSYIDLGMRYRCDDCDFDMHPE 262
I+ P++++H H H L L Y CD C D YRC +CDFD+HP+
Sbjct: 494 INDMAKGWPEKLKHDLHD-HELVLTRCTT---YGCDGCDEMGD-SWSYRCKECDFDLHPK 548
Query: 263 C 263
C
Sbjct: 549 C 549
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 563 IHESCAELPQEVRHPFHPRHSLTVQENTFQSRYFCDACRFDVKPGLRYRCDECDFDLHLE 622
I++ P++++H H H L + T Y CD C ++ YRC ECDFDLH +
Sbjct: 494 INDMAKGWPEKLKHDLH-DHELVLTRCT---TYGCDGCD-EMGDSWSYRCKECDFDLHPK 548
Query: 623 C 623
C
Sbjct: 549 C 549
>sp|Q9VDW6|DMDA_DROME Dystrophin, isoforms A/C/F/G/H OS=Drosophila melanogaster GN=Dys PE=1
SV=3
Length = 3598
Score = 37.0 bits (84), Expect = 0.60, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 236 RCDACRSYIDLGMRYRCDDC-DFDMHPECMSLKPNIK-----YPAHQH 277
+C+ C+ Y +G RYRC C +FDM +C N K +P H++
Sbjct: 3111 KCNICKEYPIVGFRYRCLKCFNFDMCQKCFFFGRNAKNHKLTHPMHEY 3158
>sp|Q75LL6|TADA2_ORYSJ Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica
GN=ADA2 PE=2 SV=2
Length = 567
Score = 35.0 bits (79), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 595 YFCDACRFDVKPGLRYRCDEC-DFDLHLECLSLKANIRYEDHQHLLILIENMSCKSKCEA 653
Y C+ C D+ +R +C +C DFDL +EC S+ A + H +++N+S C
Sbjct: 51 YHCNYCNKDISGKIRIKCSKCPDFDLCVECFSVGAEVTPHRSNHPYRVMDNLSFPLICPD 110
Query: 654 CRCDIEGTFFLRCVEC 669
D E L +E
Sbjct: 111 WNAD-EEILLLEGIEM 125
>sp|Q9ATB4|TAD2B_ARATH Transcriptional adapter ADA2b OS=Arabidopsis thaliana GN=ADA2B PE=1
SV=1
Length = 487
Score = 34.3 bits (77), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 593 SRYFCDACRFDVKPGLRYRCDEC-DFDLHLECLSLKANI 630
+Y CD C+ D+ +R +C C DFDL +EC+S+ A I
Sbjct: 43 GKYNCDYCQKDITGKIRIKCAVCPDFDLCIECMSVGAEI 81
>sp|Q6P5E8|DGKQ_MOUSE Diacylglycerol kinase theta OS=Mus musculus GN=Dgkq PE=1 SV=1
Length = 934
Score = 33.9 bits (76), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 18/99 (18%)
Query: 178 TKCKFC--CKSIHGSQSYYCCGPCNFYIHKSC---------SELPQQVRHPFHPC-HSLT 225
TK FC C + + C CNF H+ C S P VR P C SL
Sbjct: 63 TKPTFCHLCSDFIWGLAGFLCDVCNFMSHEKCLKQVKTPCTSIAPSLVRVPVAHCFGSLG 122
Query: 226 LQNNDLSEWYRCDACRSYIDLGMRYRCDDCDFDMHPECM 264
L C CR +++ +RC+ C+ +HP+C+
Sbjct: 123 LYKRKF-----CVVCRKSLEVPA-FRCEVCELHVHPDCV 155
>sp|Q8VZQ0|NRX3_ARATH Probable nucleoredoxin 3 OS=Arabidopsis thaliana GN=At4g31240 PE=2
SV=1
Length = 392
Score = 33.5 bits (75), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 203 IHKSCSELPQQVRHPFHPCHSLTLQNNDLSEWYRCDACRSYIDLGMRYRCDDCDFDMHPE 262
+ K LP++V+ H H L L D+++ Y CD C+ + C+ CD+D+HP
Sbjct: 328 LKKEGDSLPRKVKDNKHE-HELKL---DMAKAYVCDFCKKQGRF-WAFSCNACDYDLHPT 382
Query: 263 CM 264
C+
Sbjct: 383 CV 384
>sp|O45818|DKF2_CAEEL Serine/threonine-protein kinase dkf-2 OS=Caenorhabditis elegans
GN=dkf-2 PE=1 SV=4
Length = 1070
Score = 33.1 bits (74), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 774 VVCYACEKLVRGQPTYG--CDQCRFYLHKSCAE-LPRQIQHALHRHSLILKSHTDEGTKE 830
VC C+KL++G G C C++ HK C+E + + L S D+G E
Sbjct: 485 TVCQHCKKLLKGLIRQGMQCRDCKYNCHKKCSEHVAKDCSGNTKASQFFLGSQADDGASE 544
Query: 831 DHECGACLKKLSGFFYQCDNC 851
D + L+ SG + N
Sbjct: 545 DRDDDLSLRSGSGAHKKAQNT 565
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.486
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 363,928,407
Number of Sequences: 539616
Number of extensions: 16388884
Number of successful extensions: 45979
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 139
Number of HSP's that attempted gapping in prelim test: 45227
Number of HSP's gapped (non-prelim): 939
length of query: 868
length of database: 191,569,459
effective HSP length: 126
effective length of query: 742
effective length of database: 123,577,843
effective search space: 91694759506
effective search space used: 91694759506
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 66 (30.0 bits)