Query 045875
Match_columns 216
No_of_seqs 148 out of 199
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 06:23:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03089 hypothetical protein; 100.0 1.9E-56 4.2E-61 413.3 18.4 165 17-195 25-189 (373)
2 PLN03089 hypothetical protein; 100.0 1.9E-55 4.1E-60 406.7 20.0 175 6-196 180-369 (373)
3 PF04862 DUF642: Protein of un 100.0 1.7E-50 3.6E-55 333.5 19.2 157 20-190 1-159 (159)
4 PF02018 CBM_4_9: Carbohydrate 98.9 2.4E-07 5.3E-12 69.8 15.0 112 19-156 1-125 (131)
5 smart00137 MAM Domain in mepri 92.9 4.3 9.4E-05 32.9 13.1 77 98-191 76-158 (161)
6 PF00629 MAM: MAM domain; Int 85.4 14 0.00031 28.1 9.8 59 97-157 72-136 (160)
7 PF14900 DUF4493: Domain of un 84.6 4.9 0.00011 34.8 7.5 83 45-127 123-226 (235)
8 cd06263 MAM Meprin, A5 protein 73.4 42 0.00092 26.3 11.5 77 98-191 72-154 (157)
9 PF14344 DUF4397: Domain of un 72.8 8.5 0.00018 29.5 4.9 37 68-104 36-80 (122)
10 PF05547 Peptidase_M6: Immune 69.9 50 0.0011 33.9 10.7 103 74-190 339-459 (645)
11 PF15425 DUF4627: Domain of un 69.3 63 0.0014 28.8 9.9 89 18-120 5-109 (212)
12 PF08308 PEGA: PEGA domain; I 59.1 31 0.00068 24.0 5.2 36 70-106 30-68 (71)
13 cd08545 YcnI_like Reeler-like 46.3 37 0.00079 28.6 4.4 44 93-139 12-57 (152)
14 PF13620 CarboxypepD_reg: Carb 46.3 53 0.0011 22.9 4.7 40 65-104 37-80 (82)
15 PF07987 DUF1775: Domain of un 44.6 1.4E+02 0.003 25.0 7.6 44 93-139 9-54 (145)
16 cd08523 Reeler_cohesin_like Do 42.7 1.7E+02 0.0038 23.9 7.7 30 93-122 9-40 (124)
17 cd08901 SRPBCC_CalC_Aha1-like_ 37.0 2E+02 0.0042 22.2 8.6 65 91-159 35-100 (136)
18 PF03422 CBM_6: Carbohydrate b 35.5 1.9E+02 0.0042 21.7 13.4 80 75-155 21-106 (125)
19 PF14122 YokU: YokU-like prote 33.5 35 0.00075 26.7 2.2 17 65-81 14-30 (87)
20 PF15475 UPF0444: Transmembran 32.9 1.1E+02 0.0024 24.1 4.8 45 61-105 4-48 (92)
21 PF08327 AHSA1: Activator of H 31.2 2.1E+02 0.0045 20.8 7.7 65 92-157 29-95 (124)
22 TIGR02148 Fibro_Slime fibro-sl 30.5 90 0.0019 24.5 4.0 39 69-107 30-75 (90)
23 PF06832 BiPBP_C: Penicillin-B 28.4 91 0.002 22.8 3.6 69 6-81 8-77 (89)
24 PF11182 AlgF: Alginate O-acet 27.4 2E+02 0.0043 25.0 6.0 39 66-107 59-97 (181)
25 cd08895 SRPBCC_CalC_Aha1-like_ 25.3 3.3E+02 0.0071 21.1 9.1 70 90-159 40-119 (146)
26 PF09212 CBM27: Carbohydrate b 25.0 1.4E+02 0.003 25.8 4.6 104 70-190 37-168 (170)
27 KOG3527 Erythrocyte membrane p 24.5 71 0.0015 34.3 3.2 52 20-81 860-916 (975)
28 KOG1948 Metalloproteinase-rela 23.9 4.3E+02 0.0093 29.0 8.6 96 66-180 432-546 (1165)
29 PF02941 FeThRed_A: Ferredoxin 22.3 65 0.0014 24.1 1.8 30 69-98 13-44 (67)
30 PF11008 DUF2846: Protein of u 22.1 2.8E+02 0.0062 21.3 5.6 37 68-104 61-102 (117)
31 PF00031 Cystatin: Cystatin do 22.1 60 0.0013 23.5 1.7 19 92-110 45-64 (94)
32 PF14054 DUF4249: Domain of un 21.4 3.2E+02 0.0069 23.7 6.3 17 89-105 92-108 (298)
33 TIGR02656 cyanin_plasto plasto 21.1 2.2E+02 0.0048 21.3 4.6 16 91-106 62-77 (99)
34 cd02848 Chitinase_N_term Chiti 20.8 2.1E+02 0.0046 23.0 4.6 32 90-121 73-106 (106)
35 cd08894 SRPBCC_CalC_Aha1-like_ 20.4 4E+02 0.0087 20.4 8.7 19 139-157 88-106 (139)
No 1
>PLN03089 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-56 Score=413.26 Aligned_cols=165 Identities=52% Similarity=0.797 Sum_probs=155.4
Q ss_pred CCCCcccCCCCCCCCCCCCCCceEEecCCCCCCcEEeeeEEEeeCCCCCCceeEEeCCCceEEEeCCcceeeEEEEecCC
Q 045875 17 YLDTLLPNGNFELSPKKSNLNKKVILEKYSLPKWEISGLVEYISGGPQPGGFYFTVPRDVHAVRLGYEASISRNVRVKRG 96 (216)
Q Consensus 17 ~~dnLL~NG~FE~gP~~~n~~~~vl~g~s~LPgW~i~G~VeYI~sg~~~g~m~~~VPeG~~AVeLG~e~sI~Q~v~t~pG 96 (216)
.+||||+|||||++|++.+++.+++.++++||||+|+|+||||+++||||||+|+||+|+||||||+|++|+|+|+|++|
T Consensus 25 ~~~nLL~NG~FE~gP~~~~~n~t~~~g~s~LPgW~i~g~VeyI~s~~~~~~m~~~vP~G~~Av~LG~e~sI~Q~i~t~~G 104 (373)
T PLN03089 25 VTDGLLPNGDFETPPKKSQMNGTVVIGKNAIPGWEISGFVEYISSGQKQGGMLLVVPEGAHAVRLGNEASISQTLTVTKG 104 (373)
T ss_pred ccCCeecCCCccCCCCcCCCCcccccCCCCCCCCEecCcEEEEeCCCccCceeEECCCCchhhhcCCCceEEEEEEccCC
Confidence 57899999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCCCcceEEEEecCCceeeeeeecccccCeEEEEEEEEEccceEEEEEEeCCccccccccccccccccc
Q 045875 97 SIYSLTFGTTRTCAQDEVLRVLVPGQSSDLPIQTLYSINGGDTYAWAFKATSDVVKLAKRVTKEIKENFSYNSNQHPIII 176 (216)
Q Consensus 97 ~~Y~LTFsAa~~Ca~~~~v~vsv~~~s~~~~~qt~g~s~Gw~t~s~~F~A~s~~t~l~F~n~g~~~~~~S~~~~~~~d~~ 176 (216)
+.|+|||+++|+|+|+|.|+|+|++++++|||||+|+++||++|+|+|+|++++|+|+|||++ ++.|
T Consensus 105 ~~Y~LTFs~ar~c~~~~~v~vsv~~~~~~~~~qt~~~~~gw~~~s~~F~A~s~~t~l~F~~~~-----------~~~D-- 171 (373)
T PLN03089 105 SYYSLTFSAARTCAQDESLNVSVPPESGVLPLQTLYSSSGWDSYAWAFKAESDVVNLVFHNPG-----------VEED-- 171 (373)
T ss_pred CEEEEEEEecCCCCCCceEEEEecCCCcEEeeEEeccCCCcEEEEEEEEEecccEEEEEECcc-----------cCCC--
Confidence 999999999999999999999999999999999998889999999999999999999997654 4443
Q ss_pred ceeeeeeEeeeEEEEeecc
Q 045875 177 KLLEIPILHAQVLRFFSIT 195 (216)
Q Consensus 177 ~~lcGPvlDdV~v~~~~~~ 195 (216)
.+|||+||||+|..+.+.
T Consensus 172 -~~CGPviD~VaIk~l~~P 189 (373)
T PLN03089 172 -PACGPLIDAVAIKTLFPP 189 (373)
T ss_pred -CcccceeeeEEEeeccCC
Confidence 579999999999977643
No 2
>PLN03089 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-55 Score=406.67 Aligned_cols=175 Identities=26% Similarity=0.397 Sum_probs=167.8
Q ss_pred ceeeEEecCCC-CCCCcccCCCCCCCCCC-CCCCceEEec------CCCCCCcEE--eeeEEEeeCCCCCCceeEEeCCC
Q 045875 6 SATTRVIHPPR-YLDTLLPNGNFELSPKK-SNLNKKVILE------KYSLPKWEI--SGLVEYISGGPQPGGFYFTVPRD 75 (216)
Q Consensus 6 ~~~ik~l~~p~-~~dnLL~NG~FE~gP~~-~n~~~~vl~g------~s~LPgW~i--~G~VeYI~sg~~~g~m~~~VPeG 75 (216)
..+||+|.+|+ +++|||+||+||+||++ +|..+|||+| +++||||+| .|+|||||++| |+||+|
T Consensus 180 ~VaIk~l~~P~p~~~Nll~NG~FE~Gp~~~~n~~~gvllp~~~~~~~s~LpgW~i~s~~~V~yids~h------~~vp~G 253 (373)
T PLN03089 180 AVAIKTLFPPRPTKDNLLKNGGFEEGPYVFPNSSWGVLLPPNIEDDTSPLPGWMIESLKAVKYIDSAH------FSVPEG 253 (373)
T ss_pred eEEEeeccCCCccccceeecCCcccCCcccCCCCceEEeCCccccCCCCCCCcEEecCccEEEEecCc------ccCCCC
Confidence 46899999999 99999999999999998 8999999996 799999999 47999999999 999999
Q ss_pred ceEEEe--CCcceeeEEEEecCCCeEEEEEe---cCCCCCCcceEEEEecCCceeeeeeecccccCeEEEEEEEEEccce
Q 045875 76 VHAVRL--GYEASISRNVRVKRGSIYSLTFG---TTRTCAQDEVLRVLVPGQSSDLPIQTLYSINGGDTYAWAFKATSDV 150 (216)
Q Consensus 76 ~~AVeL--G~e~sI~Q~v~t~pG~~Y~LTFs---Aa~~Ca~~~~v~vsv~~~s~~~~~qt~g~s~Gw~t~s~~F~A~s~~ 150 (216)
+||||| |+|++|+|+|+|++|+.|+|+|+ |+|.|+|++.|+++++..+++|+|++.++ +||++++|.|+|++++
T Consensus 254 ~~aveL~~g~e~aI~Q~v~T~~G~~Y~LsFs~g~a~~~c~gs~~V~a~ag~~~~~v~~~s~g~-gg~~~~s~~F~A~s~~ 332 (373)
T PLN03089 254 KRAVELVSGKESAIAQVVRTVPGKSYNLSFTVGDANNGCHGSMMVEAFAGKDTQKVPYESQGK-GGFKRASLRFKAVSNR 332 (373)
T ss_pred ceEEEeccCCcceEEEEEEccCCCEEEEEEEEccCCCCCCCcEEEEEEeecccceEEEecCCC-cceEEEEEEEEeccCC
Confidence 999999 99999999999999999999999 67899999999999999999999999999 8999999999999999
Q ss_pred EEEEEEeCCcccccccccccccccccceeeeeeEeeeEEEEeeccc
Q 045875 151 VKLAKRVTKEIKENFSYNSNQHPIIIKLLEIPILHAQVLRFFSITI 196 (216)
Q Consensus 151 t~l~F~n~g~~~~~~S~~~~~~~d~~~~lcGPvlDdV~v~~~~~~~ 196 (216)
|||+| +|++||+|.||.++|||||||||+|+++++.+
T Consensus 333 Trl~F---------~s~~y~~~~d~~~~~cGPvlDdV~v~~~~~~~ 369 (373)
T PLN03089 333 TRITF---------YSSFYHTKSDDFGSLCGPVVDDVRVVPVRAPR 369 (373)
T ss_pred EEEEE---------EEeecccccCcCCCcccceeeeEEEEEccCCc
Confidence 99999 99999999999999999999999999988654
No 3
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=100.00 E-value=1.7e-50 Score=333.54 Aligned_cols=157 Identities=41% Similarity=0.616 Sum_probs=141.0
Q ss_pred CcccCCCCCCCCCCCCCCceEEe-cCCCCCCcEEeeeEEEeeCCCCCCceeEEeCCCceEEEeCCcceeeEEEEecCCCe
Q 045875 20 TLLPNGNFELSPKKSNLNKKVIL-EKYSLPKWEISGLVEYISGGPQPGGFYFTVPRDVHAVRLGYEASISRNVRVKRGSI 98 (216)
Q Consensus 20 nLL~NG~FE~gP~~~n~~~~vl~-g~s~LPgW~i~G~VeYI~sg~~~g~m~~~VPeG~~AVeLG~e~sI~Q~v~t~pG~~ 98 (216)
|||+||+||++|+..+++.+.+. +.++||||+++|.||||+++|.+|||+++||+|.||||||+|++|+|+|+|++|++
T Consensus 1 nLl~NG~FE~~p~~~~~~~~~~~~~~s~ipGWtv~g~Ve~i~~~~~~g~~~~~~p~G~~aveLg~~~~I~Q~~~t~~G~~ 80 (159)
T PF04862_consen 1 NLLVNGSFEEGPYNSNMNGTSLSDGSSSIPGWTVSGSVEYIDSGHFQGGMYFAVPEGKQAVELGNEGSISQTFTTVPGST 80 (159)
T ss_pred CCccCCCCCCCCccCCCCcceEccCCCcCCCcEEcCEEEEEecCCccCceeeeCCCCceEEEcCCCceEEEEEEccCCCE
Confidence 79999999999998667666666 78999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCcceEEEEecCC-ceeeeeeecccccCeEEEEEEEEEccceEEEEEEeCCcccccccccccccccccc
Q 045875 99 YSLTFGTTRTCAQDEVLRVLVPGQ-SSDLPIQTLYSINGGDTYAWAFKATSDVVKLAKRVTKEIKENFSYNSNQHPIIIK 177 (216)
Q Consensus 99 Y~LTFsAa~~Ca~~~~v~vsv~~~-s~~~~~qt~g~s~Gw~t~s~~F~A~s~~t~l~F~n~g~~~~~~S~~~~~~~d~~~ 177 (216)
|+|||+++++|++.+.++|+|+++ +.++++++.+++++|++|+|.|+|.+++++|.|+|+ +++.|
T Consensus 81 Y~LtF~~~~~~~~~~~l~V~v~~~~~~~~~~~~~~~~~~w~~~s~~F~A~~t~~~l~f~~~-----------~~~~d--- 146 (159)
T PF04862_consen 81 YTLTFSLARNCAQSESLSVSVGGQFSFVVTIQTSYGSGGWDTYSFTFTASSTRITLTFHNP-----------GMESD--- 146 (159)
T ss_pred EEEEEEecCCCCCCccEEEEEecccceEEEeeccCCCCCcEEEEEEEEeCCCEEEEEEECC-----------CccCC---
Confidence 999999999999999999999986 899999999987789999999999776666666554 34433
Q ss_pred eeeeeeEeeeEEE
Q 045875 178 LLEIPILHAQVLR 190 (216)
Q Consensus 178 ~lcGPvlDdV~v~ 190 (216)
.+|||+||||+|.
T Consensus 147 ~~cGp~iDnV~vk 159 (159)
T PF04862_consen 147 SACGPVIDNVSVK 159 (159)
T ss_pred CCceeEEEEEEeC
Confidence 3899999999984
No 4
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=98.85 E-value=2.4e-07 Score=69.77 Aligned_cols=112 Identities=18% Similarity=0.233 Sum_probs=68.5
Q ss_pred CCcccCCCCCCCCCCCCCCceEEecCCCCCCcEEeee---EEEeeCCCCCCceeEEeCCCceEEEe-CC----cce-eeE
Q 045875 19 DTLLPNGNFELSPKKSNLNKKVILEKYSLPKWEISGL---VEYISGGPQPGGFYFTVPRDVHAVRL-GY----EAS-ISR 89 (216)
Q Consensus 19 dnLL~NG~FE~gP~~~n~~~~vl~g~s~LPgW~i~G~---VeYI~sg~~~g~m~~~VPeG~~AVeL-G~----e~s-I~Q 89 (216)
.|||+||+||++ .+.+|...+. ...++ .+.|.+++++ +. .+. ..+
T Consensus 1 ~nli~N~~Fe~~---------------~~~~W~~~~~~~~~~~~~-----------~~~g~~~l~v~~~~~~~~~~~~~~ 54 (131)
T PF02018_consen 1 GNLIKNGGFEDG---------------GLSGWSFWGNSGASASVD-----------NASGNYSLKVSNRSATWDGQSQQQ 54 (131)
T ss_dssp GBSSSSTTSTTT---------------STTTEEEESSTTEEEEEE-----------ECSSSEEEEEECCSSGCGEEEEEE
T ss_pred CCEEECCCccCC---------------CCCCCEEccCCCEEEEEE-----------cCCCeEEEEEECCCCCccccceec
Confidence 389999999992 2568998442 33333 2378888888 22 223 233
Q ss_pred EEEecCCCeEEEEEecCCCCCCcceEEEEecCC-c-eeeeeeecccccCeEEEEEEEEEccceE--EEEEE
Q 045875 90 NVRVKRGSIYSLTFGTTRTCAQDEVLRVLVPGQ-S-SDLPIQTLYSINGGDTYAWAFKATSDVV--KLAKR 156 (216)
Q Consensus 90 ~v~t~pG~~Y~LTFsAa~~Ca~~~~v~vsv~~~-s-~~~~~qt~g~s~Gw~t~s~~F~A~s~~t--~l~F~ 156 (216)
.+.+.+|..|+|+|.+.......-.|.+..... . ..+..+..-..+.|++++..|++..+.. +|.|+
T Consensus 55 ~~~l~~G~~Y~~s~~vk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~s~~ft~~~~~~~~~l~~~ 125 (131)
T PF02018_consen 55 TISLKPGKTYTVSFWVKADSGGTVSVSLRDEDGSPYNWYTGQTVTITGEWTKYSGTFTAPSDDDTVRLYFE 125 (131)
T ss_dssp EEEE-TTSEEEEEEEEEESSSEEEEEEEEESSTTTEEEEEEEEEEETSSEEEEEEEEEEESSCEEEEEEEE
T ss_pred ceEecCCCEEEEEEEEEeCCCCEEEEEEEEcCCCCcEEEEEEEEECCCCcEEEEEEEEECCCCceEEEEEE
Confidence 368999999999999644444333444444444 1 2232212222378999999999985544 55553
No 5
>smart00137 MAM Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others). Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.
Probab=92.86 E-value=4.3 Score=32.86 Aligned_cols=77 Identities=16% Similarity=-0.050 Sum_probs=45.9
Q ss_pred eEEEEEe--cCCCCCCcceEEEEecC--Cce-eeeeeecccc-cCeEEEEEEEEEccceEEEEEEeCCcccccccccccc
Q 045875 98 IYSLTFG--TTRTCAQDEVLRVLVPG--QSS-DLPIQTLYSI-NGGDTYAWAFKATSDVVKLAKRVTKEIKENFSYNSNQ 171 (216)
Q Consensus 98 ~Y~LTFs--Aa~~Ca~~~~v~vsv~~--~s~-~~~~qt~g~s-~Gw~t~s~~F~A~s~~t~l~F~n~g~~~~~~S~~~~~ 171 (216)
.+-|+|. +...-.+. |+|++-. ... ..=.+..+.. ..|....+.+.......+|+|+-.-.
T Consensus 76 ~~cl~F~Y~m~G~~~g~--L~V~~~~~~~~~~~~lw~~~g~~~~~W~~~~v~l~~~~~~fqi~fe~~~g----------- 142 (161)
T smart00137 76 THCLTFWYYMYGSGSGT--LNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSKWQQPFQVVFEGTRG----------- 142 (161)
T ss_pred CeEEEEEEEecCCCCCE--EEEEEEeCCCCCceEeEEEcCCCCCceEEEEEEecCCCCcEEEEEEEEEc-----------
Confidence 5669998 44334444 5555532 121 2113333432 45999999999888899999954210
Q ss_pred cccccceeeeeeEeeeEEEE
Q 045875 172 HPIIIKLLEIPILHAQVLRF 191 (216)
Q Consensus 172 ~~d~~~~lcGPvlDdV~v~~ 191 (216)
.+...-=+||||++..
T Consensus 143 ----~~~~g~IAiDDI~i~~ 158 (161)
T smart00137 143 ----KGHSGYIALDDILLSN 158 (161)
T ss_pred ----CCccceEEEeEEEeec
Confidence 0112334799999873
No 6
>PF00629 MAM: MAM domain; InterPro: IPR000998 MAM is an acronym derived from meprin, A-5 protein, and receptor protein-tyrosine phosphatase mu. The MAM domain consists of approximately 170 amino acids. It occurs in several cell surface proteins, including Meprins, and is thought to function as an interaction or adhesion domain []. The domain has been shown to play a role in homodimerization of protein-tyrosine phosphatase mu [] and appears to help determine the specificity of these interactions. It has been reported that certain cysteine mutations in the MAM domain of murine meprin A result in the formation of monomeric meprin, which has altered stability and activity []. This indicates that these domain-domain interactions are critical for structure and function of the enzyme. It has also been shown that the MAM domain of meprins is necessary for correct folding and transport through the secretory pathway []. ; GO: 0016020 membrane; PDB: 2C9A_A 2V5Y_A.
Probab=85.35 E-value=14 Score=28.11 Aligned_cols=59 Identities=17% Similarity=0.027 Sum_probs=29.9
Q ss_pred CeEEEEEe--cCCCCCCcceEEEEecCC---ceeeeeeeccc-ccCeEEEEEEEEEccceEEEEEEe
Q 045875 97 SIYSLTFG--TTRTCAQDEVLRVLVPGQ---SSDLPIQTLYS-INGGDTYAWAFKATSDVVKLAKRV 157 (216)
Q Consensus 97 ~~Y~LTFs--Aa~~Ca~~~~v~vsv~~~---s~~~~~qt~g~-s~Gw~t~s~~F~A~s~~t~l~F~n 157 (216)
..+-|+|. +.+.-. ..|+|.+... ....-.+..+. ...|....+.+.+.....+|+|..
T Consensus 72 ~~~cl~F~y~~~g~~~--~~L~V~v~~~~~~~~~~l~~~~~~~~~~W~~~~v~l~~~~~~~~i~f~~ 136 (160)
T PF00629_consen 72 GNSCLSFWYYMYGSSV--GTLRVYVREESTGNSTPLWSITGSQGNSWQRAQVNLPPISSPFQIIFEA 136 (160)
T ss_dssp S--EEEEEEEEE-SSS--EEEEEEEEETT----S-SEEE-----SSEEEEEEEE---TS-EEEEEEE
T ss_pred ccceeEEEEeeccccc--eeeEEEEEecCCccceeeeeecCCCcCCccceEEEcccccccceEEEEE
Confidence 35559999 322222 3466666544 12212222222 367999999999999999999954
No 7
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=84.60 E-value=4.9 Score=34.78 Aligned_cols=83 Identities=20% Similarity=0.331 Sum_probs=55.7
Q ss_pred CCC-CCcEE------eeeEEEeeCC-CCCCceeEEeCCCceEEEe--------CCcceeeEEE-----EecCCCeEEEEE
Q 045875 45 YSL-PKWEI------SGLVEYISGG-PQPGGFYFTVPRDVHAVRL--------GYEASISRNV-----RVKRGSIYSLTF 103 (216)
Q Consensus 45 s~L-PgW~i------~G~VeYI~sg-~~~g~m~~~VPeG~~AVeL--------G~e~sI~Q~v-----~t~pG~~Y~LTF 103 (216)
.-. ..|++ .+.+.|-... ....-.||.+|++...+.+ |.+-.-.+++ .+.+|.+|.|+|
T Consensus 123 ~~f~~~y~vtV~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~~~l~~~~~~t~~~g~~~~~~~~~~~~~~~v~~~~~y~lt~ 202 (235)
T PF14900_consen 123 KYFGSDYSVTVSTGAGGSVTFNKDETTSDRSAYFKAGEGGETLTLTLSGTNKDGESVSKEQTINKDISNVKAGDHYKLTF 202 (235)
T ss_pred hhhccceEEEEEccCCccEEEeeccCCCCcceEEECCCCCceEEEEEEEEecCCcccccceeEeeccCcccCceEEEEEE
Confidence 345 77887 2368873221 1234568999998888776 3222344444 689999999999
Q ss_pred ecCCCCCCcceEEEEecCCceeee
Q 045875 104 GTTRTCAQDEVLRVLVPGQSSDLP 127 (216)
Q Consensus 104 sAa~~Ca~~~~v~vsv~~~s~~~~ 127 (216)
.+...-.+...+.+.+.....+.+
T Consensus 203 ~~~~~~~g~~~i~I~vd~~~~~~~ 226 (235)
T PF14900_consen 203 DPSDSSAGSIGITITVDDTTEDET 226 (235)
T ss_pred eeccCCCCeeEEEEEEeCCeEEEe
Confidence 998666777888888877544333
No 8
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=73.43 E-value=42 Score=26.32 Aligned_cols=77 Identities=14% Similarity=-0.042 Sum_probs=46.1
Q ss_pred eEEEEEe--cCCCCCCcceEEEEecCCce---eeeeeeccc-ccCeEEEEEEEEEccceEEEEEEeCCcccccccccccc
Q 045875 98 IYSLTFG--TTRTCAQDEVLRVLVPGQSS---DLPIQTLYS-INGGDTYAWAFKATSDVVKLAKRVTKEIKENFSYNSNQ 171 (216)
Q Consensus 98 ~Y~LTFs--Aa~~Ca~~~~v~vsv~~~s~---~~~~qt~g~-s~Gw~t~s~~F~A~s~~t~l~F~n~g~~~~~~S~~~~~ 171 (216)
..-|+|. +...-.+ .|+|.+..... ..=++..+. ...|....+.+.+.....+|+|+-...
T Consensus 72 ~~Cl~F~y~~~g~~~g--~L~V~v~~~~~~~~~~lw~~~~~~~~~W~~~~v~l~~~~~~fqi~fe~~~~----------- 138 (157)
T cd06263 72 SHCLSFWYHMYGSGVG--TLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRG----------- 138 (157)
T ss_pred CeEEEEEEEecCCCCC--eEEEEEEeCCCCcceEEEEEECCCCCeeEEEEEEECCCCCceEEEEEEEEC-----------
Confidence 3449998 3322234 45555543322 222233333 267999999999998999999954210
Q ss_pred cccccceeeeeeEeeeEEEE
Q 045875 172 HPIIIKLLEIPILHAQVLRF 191 (216)
Q Consensus 172 ~~d~~~~lcGPvlDdV~v~~ 191 (216)
.+....=+||||+|..
T Consensus 139 ----~~~~g~IAIDdI~l~~ 154 (157)
T cd06263 139 ----SGSRGDIALDDISLSP 154 (157)
T ss_pred ----CCccccEEEeEEEEec
Confidence 0122345799999863
No 9
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=72.80 E-value=8.5 Score=29.48 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=30.9
Q ss_pred eeEEeCCCceEEEe---CCcc-----eeeEEEEecCCCeEEEEEe
Q 045875 68 FYFTVPRDVHAVRL---GYEA-----SISRNVRVKRGSIYSLTFG 104 (216)
Q Consensus 68 m~~~VPeG~~AVeL---G~e~-----sI~Q~v~t~pG~~Y~LTFs 104 (216)
.|+.+|.|.|-|++ |... -++..+...+|+.|+|--.
T Consensus 36 ~Y~~v~~G~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~ 80 (122)
T PF14344_consen 36 DYLPVPPGTYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAV 80 (122)
T ss_pred CceEECCceEEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEE
Confidence 37999999999999 5552 3578889999999999877
No 10
>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=69.92 E-value=50 Score=33.88 Aligned_cols=103 Identities=17% Similarity=0.042 Sum_probs=63.5
Q ss_pred CCceEEEe--CCc--ceeeEEEEecCCCeEEEEEecCCCCC---CcceEE-EEecCCc--eeeeeeec-------ccccC
Q 045875 74 RDVHAVRL--GYE--ASISRNVRVKRGSIYSLTFGTTRTCA---QDEVLR-VLVPGQS--SDLPIQTL-------YSING 136 (216)
Q Consensus 74 eG~~AVeL--G~e--~sI~Q~v~t~pG~~Y~LTFsAa~~Ca---~~~~v~-vsv~~~s--~~~~~qt~-------g~s~G 136 (216)
+|.++-=- |+. ..+.+.|.+..++.=+|+|.+--.-. --..|+ |+..+.. ..++.... .++++
T Consensus 339 ~G~~~w~Sg~Gd~l~~tLt~~vdLp~~s~AtLsfk~wydIE~dyDy~~VevvStdGg~Twt~~~g~~~~~~~~~~~~sg~ 418 (645)
T PF05547_consen 339 SGSYAWYSGSGDDLNNTLTRSVDLPAASSATLSFKAWYDIEADYDYAYVEVVSTDGGKTWTPLPGNTTGNGNPNGGSSGG 418 (645)
T ss_pred CCceEEEECCCcchhhheeeeeccCCCCCeEEEeehheecccCCceEEEEEEEcCCCceeEecCccccccCCCCCCCccc
Confidence 45554444 333 56788887777776788888522111 235566 6666542 23333221 12367
Q ss_pred eEEEEEEEEE-ccceEEEEEEeCCcccccccccccccccccceeeeeeEeeeEEE
Q 045875 137 GDTYAWAFKA-TSDVVKLAKRVTKEIKENFSYNSNQHPIIIKLLEIPILHAQVLR 190 (216)
Q Consensus 137 w~t~s~~F~A-~s~~t~l~F~n~g~~~~~~S~~~~~~~d~~~~lcGPvlDdV~v~ 190 (216)
|...+++..| .+..++|.| .|.+ |..-...|-.|||++|.
T Consensus 419 Wv~~~~DLSayAGqtV~LrF------------rY~T--D~~v~~~G~~vDdi~v~ 459 (645)
T PF05547_consen 419 WVDASFDLSAYAGQTVQLRF------------RYVT--DGGVAGRGFYVDDIRVT 459 (645)
T ss_pred eeEeEeccccccCCeEEEEE------------EEEc--CCCccCCcEEEEEEEEE
Confidence 9999999988 455779999 4443 33344578999999997
No 11
>PF15425 DUF4627: Domain of unknown function (DUF4627); PDB: 3SEE_A.
Probab=69.35 E-value=63 Score=28.78 Aligned_cols=89 Identities=18% Similarity=0.369 Sum_probs=38.2
Q ss_pred CCCcccCCCCCCCCCCCCCCceEEecCCCCCCcEEe-----e--eEEEeeCCCCCCceeEEeCCCceEEEe-CCc-----
Q 045875 18 LDTLLPNGNFELSPKKSNLNKKVILEKYSLPKWEIS-----G--LVEYISGGPQPGGFYFTVPRDVHAVRL-GYE----- 84 (216)
Q Consensus 18 ~dnLL~NG~FE~gP~~~n~~~~vl~g~s~LPgW~i~-----G--~VeYI~sg~~~g~m~~~VPeG~~AVeL-G~e----- 84 (216)
+.||++||+|.++-..-+.+. -.-.+..|-+- | +.-++.++.++ =..|++. +-+
T Consensus 5 AQnLIkN~~F~t~Lt~e~~~a----s~~T~~~Wfavnde~~G~Tt~a~~~tnD~k---------~~na~~is~~~~~tsW 71 (212)
T PF15425_consen 5 AQNLIKNGDFDTPLTNENTTA----SNTTFGKWFAVNDEWDGATTIAWINTNDQK---------TGNAWGISSWDKQTSW 71 (212)
T ss_dssp -----SSTT--S----B-SSG----GGS-TTSEEEEE-S-TTS-EEEEEE-S-TT---------S-EEEEETT-SS---T
T ss_pred hhhhhhcCccCcchhccccCc----CcccccceEEEecccCCceEeeeeccCccc---------ccceEEEeecccCcHH
Confidence 569999999996322221111 02335577651 2 45555554432 2235665 322
Q ss_pred --ceeeEEE-EecCCCeEEEEEecCCCCCCcceEEEEec
Q 045875 85 --ASISRNV-RVKRGSIYSLTFGTTRTCAQDEVLRVLVP 120 (216)
Q Consensus 85 --~sI~Q~v-~t~pG~~Y~LTFsAa~~Ca~~~~v~vsv~ 120 (216)
+-+.|.+ .=..-.-|.|+|.|.---.+ ..|+|++-
T Consensus 72 ykafLaQr~~~gae~~mYtLsF~AkA~t~g-~qv~V~Ir 109 (212)
T PF15425_consen 72 YKAFLAQRYTNGAEKGMYTLSFDAKADTNG-TQVHVFIR 109 (212)
T ss_dssp TTEEEEEEE-S---SSEEEEEEEEEESSTT--EEEEEEE
T ss_pred HHHHHHHHHhcccccceEEEEEEeecccCC-CcEEEEEE
Confidence 6688999 44455679999997433333 13555553
No 12
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=59.06 E-value=31 Score=24.02 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=29.4
Q ss_pred EEeCCCceEEEe---CCcceeeEEEEecCCCeEEEEEecC
Q 045875 70 FTVPRDVHAVRL---GYEASISRNVRVKRGSIYSLTFGTT 106 (216)
Q Consensus 70 ~~VPeG~~AVeL---G~e~sI~Q~v~t~pG~~Y~LTFsAa 106 (216)
..+|.|.|.|++ |-+ ...++|.+.+|+...|.+.+.
T Consensus 30 ~~l~~G~~~v~v~~~Gy~-~~~~~v~v~~~~~~~v~~~L~ 68 (71)
T PF08308_consen 30 KDLPPGEHTVTVEKPGYE-PYTKTVTVKPGETTTVNVTLE 68 (71)
T ss_pred eecCCccEEEEEEECCCe-eEEEEEEECCCCEEEEEEEEE
Confidence 348999999999 543 467999999999999998763
No 13
>cd08545 YcnI_like Reeler-like domain of YcnI and similar proteins. YcnI is a copper-responsive gene of Bacillus subtilis. It is homologous to an uncharacterized protein from Nocardia farcinica, which shares a conserved three-dimensional structure with cohesins and the reeler domain. Some members in this YcnI_like family have C-terminal domains (DUF461) that may bind copper.
Probab=46.35 E-value=37 Score=28.64 Aligned_cols=44 Identities=27% Similarity=0.414 Sum_probs=30.3
Q ss_pred ecCCCeEEEEEecCCCCCCc--ceEEEEecCCceeeeeeecccccCeEE
Q 045875 93 VKRGSIYSLTFGTTRTCAQD--EVLRVLVPGQSSDLPIQTLYSINGGDT 139 (216)
Q Consensus 93 t~pG~~Y~LTFsAa~~Ca~~--~~v~vsv~~~s~~~~~qt~g~s~Gw~t 139 (216)
...|++|.++|...+.|.++ -+|+|.++..-..+.++. + -||+.
T Consensus 12 a~aGs~~~~tfrVPhecdg~~Ttkv~V~lP~gv~~v~p~p--~-pGWt~ 57 (152)
T cd08545 12 AAAGSYYKLTFRVPHGCDGAATTKVRVKLPEGVASVKPQP--K-PGWTV 57 (152)
T ss_pred CCCCceEEEEEEccCCCCCCCceEEEEEcCCCccccceec--C-CCCEE
Confidence 45699999999999999875 567777776433333322 2 56754
No 14
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=46.26 E-value=53 Score=22.89 Aligned_cols=40 Identities=28% Similarity=0.552 Sum_probs=20.8
Q ss_pred CCceeEE-eCCCceEEEe---CCcceeeEEEEecCCCeEEEEEe
Q 045875 65 PGGFYFT-VPRDVHAVRL---GYEASISRNVRVKRGSIYSLTFG 104 (216)
Q Consensus 65 ~g~m~~~-VPeG~~AVeL---G~e~sI~Q~v~t~pG~~Y~LTFs 104 (216)
.|.+.|. +|.|.+-|+. |-...-...+.+.+|..-.|.|.
T Consensus 37 ~G~f~~~~l~~g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~~i~ 80 (82)
T PF13620_consen 37 DGRFSFEGLPPGTYTLRVSAPGYQPQTQENVTVTAGQTTTVDIT 80 (82)
T ss_dssp TSEEEEEEE-SEEEEEEEEBTTEE-EEEEEEEESSSSEEE--EE
T ss_pred CceEEEEccCCEeEEEEEEECCcceEEEEEEEEeCCCEEEEEEE
Confidence 4555565 6677776666 43333323466666666666654
No 15
>PF07987 DUF1775: Domain of unkown function (DUF1775); InterPro: IPR012533 GLE1 is an essential nuclear export factor involved in RNA export.; PDB: 3ESM_A.
Probab=44.57 E-value=1.4e+02 Score=24.96 Aligned_cols=44 Identities=27% Similarity=0.438 Sum_probs=23.8
Q ss_pred ecCCCeEEEEEecCCCCCCc--ceEEEEecCCceeeeeeecccccCeEE
Q 045875 93 VKRGSIYSLTFGTTRTCAQD--EVLRVLVPGQSSDLPIQTLYSINGGDT 139 (216)
Q Consensus 93 t~pG~~Y~LTFsAa~~Ca~~--~~v~vsv~~~s~~~~~qt~g~s~Gw~t 139 (216)
..+|++|.++|...+.|.++ -+|+|.++..-..+..+. + -||+.
T Consensus 9 a~~G~~~~~tf~Vp~e~d~a~Tt~v~v~lP~gv~~v~~~p--~-pGWt~ 54 (145)
T PF07987_consen 9 AAAGSYYKLTFRVPHECDGAATTKVRVTLPEGVTSVSPQP--K-PGWTV 54 (145)
T ss_dssp -BTT--EEEEEEEE---SS--EEEEEEEEEE-ESEEEE------TTEEE
T ss_pred cCCCceEEEEEEecCCCCCCCceEEEEECCCcccccceee--C-CCCEE
Confidence 46799999999999999875 566777776544443332 2 67764
No 16
>cd08523 Reeler_cohesin_like Domains similar to the eukaryotic reeler domain and bacterial cohesins. This diverse family summarizes a set of distantly related domains, as revealed by structural similarity.
Probab=42.65 E-value=1.7e+02 Score=23.90 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=24.3
Q ss_pred ecCCCeEEEEEecCCCCC--CcceEEEEecCC
Q 045875 93 VKRGSIYSLTFGTTRTCA--QDEVLRVLVPGQ 122 (216)
Q Consensus 93 t~pG~~Y~LTFsAa~~Ca--~~~~v~vsv~~~ 122 (216)
..+|++|.|||...+.|. .--.+.|.++.+
T Consensus 9 ~~~Gs~~~vtf~Vp~e~~~a~ttk~~v~lp~~ 40 (124)
T cd08523 9 VQVGTNLEVTLSIDEPVNFAPEIEFTVNLKSN 40 (124)
T ss_pred ccCCceEEEEEECCCCccCcceEEEEEEcCCC
Confidence 579999999999988884 446677788776
No 17
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=36.97 E-value=2e+02 Score=22.24 Aligned_cols=65 Identities=9% Similarity=0.111 Sum_probs=38.6
Q ss_pred EEecCCCeEEEEEecCCCCCCcceEEEEecCCceeeeeeecccccCeEEEEEEEEEcc-ceEEEEEEeCC
Q 045875 91 VRVKRGSIYSLTFGTTRTCAQDEVLRVLVPGQSSDLPIQTLYSINGGDTYAWAFKATS-DVVKLAKRVTK 159 (216)
Q Consensus 91 v~t~pG~~Y~LTFsAa~~Ca~~~~v~vsv~~~s~~~~~qt~g~s~Gw~t~s~~F~A~s-~~t~l~F~n~g 159 (216)
++..+|..|...|.+.+... ...+....++..-.+.+... +.-.+..|.|.+.+ ..|+|++..-+
T Consensus 35 ~~~~~Gg~~~~~~~~~~~~~-~g~~~~~~p~~~l~~~w~~~---~~~s~v~~~l~~~~~ggT~ltl~~~~ 100 (136)
T cd08901 35 GRLEEGKTVTWDWEMYGASV-PVNVLEIEPNKRIVIEWGDP---GEPTTVEWTFEELDDGRTFVTITESG 100 (136)
T ss_pred ccccCCCEEEEEEEccCCce-EEEEEEEcCCCEEEEEecCC---CCCEEEEEEEEECCCCcEEEEEEECC
Confidence 34557888888887543211 12333334444444444321 23456789999988 88999997643
No 18
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=35.46 E-value=1.9e+02 Score=21.70 Aligned_cols=80 Identities=14% Similarity=0.064 Sum_probs=46.0
Q ss_pred CceEEEeCCc-ceeeE-EEEecCCCeEEEEEecCCCCCCcceEEEEecC----CceeeeeeecccccCeEEEEEEEEEcc
Q 045875 75 DVHAVRLGYE-ASISR-NVRVKRGSIYSLTFGTTRTCAQDEVLRVLVPG----QSSDLPIQTLYSINGGDTYAWAFKATS 148 (216)
Q Consensus 75 G~~AVeLG~e-~sI~Q-~v~t~pG~~Y~LTFsAa~~Ca~~~~v~vsv~~----~s~~~~~qt~g~s~Gw~t~s~~F~A~s 148 (216)
|.+.+...++ +.|.= .|.+..+-.|.|+|..++.-.. -.+++.+.+ ....+++...++-..|.......+...
T Consensus 21 ~~~~~~~~~~G~~~~~~~Vd~~~~g~y~~~~~~a~~~~~-~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~l~~ 99 (125)
T PF03422_consen 21 GGYVVGYIENGDWIEYNNVDVPEAGTYTLTIRYANGGGG-GTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVKLPA 99 (125)
T ss_dssp TSEEEESSSTTTEEEEEEEEESSSEEEEEEEEEEESSSS-EEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEEEES
T ss_pred CceEEecccCCCEEEEEEEeeCCCceEEEEEEEECCCCC-cEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEeeCC
Confidence 5666666323 33433 3888899999999885433222 678888887 246777755444334555544444443
Q ss_pred ceEEEEE
Q 045875 149 DVVKLAK 155 (216)
Q Consensus 149 ~~t~l~F 155 (216)
-.=+|.|
T Consensus 100 G~h~i~l 106 (125)
T PF03422_consen 100 GKHTIYL 106 (125)
T ss_dssp EEEEEEE
T ss_pred CeeEEEE
Confidence 3334444
No 19
>PF14122 YokU: YokU-like protein
Probab=33.54 E-value=35 Score=26.70 Aligned_cols=17 Identities=18% Similarity=0.563 Sum_probs=14.9
Q ss_pred CCceeEEeCCCceEEEe
Q 045875 65 PGGFYFTVPRDVHAVRL 81 (216)
Q Consensus 65 ~g~m~~~VPeG~~AVeL 81 (216)
.+..+|.+|+|.+||++
T Consensus 14 ~~tvyWeLpdGtraIeI 30 (87)
T PF14122_consen 14 ESTVYWELPDGTRAIEI 30 (87)
T ss_pred cceEEEEcCCCceEEEe
Confidence 45678999999999999
No 20
>PF15475 UPF0444: Transmembrane protein C12orf23, UPF0444
Probab=32.92 E-value=1.1e+02 Score=24.11 Aligned_cols=45 Identities=16% Similarity=0.100 Sum_probs=35.7
Q ss_pred CCCCCCceeEEeCCCceEEEeCCcceeeEEEEecCCCeEEEEEec
Q 045875 61 GGPQPGGFYFTVPRDVHAVRLGYEASISRNVRVKRGSIYSLTFGT 105 (216)
Q Consensus 61 sg~~~g~m~~~VPeG~~AVeLG~e~sI~Q~v~t~pG~~Y~LTFsA 105 (216)
..++|++|+|.+-.|-..+-=|--++-.--+.-+-|+.|-||=+|
T Consensus 4 hp~~~~Gm~wR~tgGlf~~TkGavGatvGgVawvg~kS~~~tKtA 48 (92)
T PF15475_consen 4 HPQAQPGMIWRVTGGLFSVTKGAVGATVGGVAWVGSKSLELTKTA 48 (92)
T ss_pred CCCCCCceEEEeecceEEeecchhceeecceEEEcccceEEEEEE
Confidence 345789999999999988887655544456788999999999775
No 21
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=31.25 E-value=2.1e+02 Score=20.85 Aligned_cols=65 Identities=8% Similarity=0.096 Sum_probs=36.3
Q ss_pred EecCCCeEEEEEe-cCCCCCCcceEEEEecCCceeeeeeecccc-cCeEEEEEEEEEccceEEEEEEe
Q 045875 92 RVKRGSIYSLTFG-TTRTCAQDEVLRVLVPGQSSDLPIQTLYSI-NGGDTYAWAFKATSDVVKLAKRV 157 (216)
Q Consensus 92 ~t~pG~~Y~LTFs-Aa~~Ca~~~~v~vsv~~~s~~~~~qt~g~s-~Gw~t~s~~F~A~s~~t~l~F~n 157 (216)
...+|..|++ .. -+..+.....+....++..-.+........ ..-..-.+.|.+..+.|+|+|..
T Consensus 29 ~~~~Gg~~~~-~~~~g~~~~~~~~v~~~~p~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~T~l~~~~ 95 (124)
T PF08327_consen 29 DFRPGGSFRF-MDPDGGEFGFDGTVLEVEPPERIVFTWRMPDDPDGPESRVTFEFEEEGGGTRLTLTH 95 (124)
T ss_dssp ECSTTEEEEE-EETTSEEEEEEEEEEEEETTTEEEEEEEEETSSSCEEEEEEEEEEEETTEEEEEEEE
T ss_pred eeecCCEEEE-EecCCCCceeeEEEEEEeCCEEEEEEEEccCCCCCCceEEEEEEEEcCCcEEEEEEE
Confidence 3355666655 12 122222233355555555555554433221 22456789999999999999965
No 22
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=30.48 E-value=90 Score=24.47 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=28.3
Q ss_pred eEEeCCCceEEEeC-CcceeeEEE-----EecCCCeEEEEEe-cCC
Q 045875 69 YFTVPRDVHAVRLG-YEASISRNV-----RVKRGSIYSLTFG-TTR 107 (216)
Q Consensus 69 ~~~VPeG~~AVeLG-~e~sI~Q~v-----~t~pG~~Y~LTFs-Aa~ 107 (216)
+|.-=.|+-+|||| .-+..++.| ..++|+.|.+.|= |-|
T Consensus 30 vWVFIn~kLv~DlGG~H~~~~~sV~l~~lgl~~g~~Y~~d~F~~ER 75 (90)
T TIGR02148 30 VWVFINNKLVVDIGGQHPAVPGAVDLDTLGLKEGKTYPFDIFYCER 75 (90)
T ss_pred EEEEECCEEEEEccCcCCCcccEEEhhhcCCccCcEeeEEEEEEee
Confidence 47777899999994 333444444 3689999999995 544
No 23
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=28.37 E-value=91 Score=22.79 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=39.7
Q ss_pred ceeeEEecCCCCCCCcccCCCCCCCCCCCCCCceEEecCCCCCCcEEeeeEEEeeCCCCCCceeEEe-CCCceEEEe
Q 045875 6 SATTRVIHPPRYLDTLLPNGNFELSPKKSNLNKKVILEKYSLPKWEISGLVEYISGGPQPGGFYFTV-PRDVHAVRL 81 (216)
Q Consensus 6 ~~~ik~l~~p~~~dnLL~NG~FE~gP~~~n~~~~vl~g~s~LPgW~i~G~VeYI~sg~~~g~m~~~V-PeG~~AVeL 81 (216)
...++.++|+. .+-+..+.++.+ +.. ..-.+.-+ ..---|.+.| +||........+.|.. ..|.|-|.+
T Consensus 8 ~~~l~I~~P~~-g~~~~~~~~~~~-~~~--l~l~a~~~-~~~~~W~vdg--~~~g~~~~~~~~~~~~~~~G~h~l~v 77 (89)
T PF06832_consen 8 GSPLRITSPPD-GAVLALDPGIPE-RQP--LVLKAAGG-RGPVYWFVDG--EPLGTTQPGHQLFWQPDRPGEHTLTV 77 (89)
T ss_pred CCCCEEEecCC-CCEEEeCCCCCc-cce--EEEEEeCC-CCcEEEEECC--EEcccCCCCCeEEeCCCCCeeEEEEE
Confidence 34567777765 112445555531 111 11112222 3455799988 4665555566788888 889999888
No 24
>PF11182 AlgF: Alginate O-acetyl transferase AlgF
Probab=27.37 E-value=2e+02 Score=25.05 Aligned_cols=39 Identities=23% Similarity=0.412 Sum_probs=29.8
Q ss_pred CceeEEeCCCceEEEeCCcceeeEEEEecCCCeEEEEEecCC
Q 045875 66 GGFYFTVPRDVHAVRLGYEASISRNVRVKRGSIYSLTFGTTR 107 (216)
Q Consensus 66 g~m~~~VPeG~~AVeLG~e~sI~Q~v~t~pG~~Y~LTFsAa~ 107 (216)
-.-++.+|.|.+.+..|... ..+++.+|..|+|-.....
T Consensus 59 ~~~~~~~~~G~~~~~~ggk~---~~~~v~~~~f~TvV~~~~g 97 (181)
T PF11182_consen 59 ASSYFFVPPGGYTLQVGGKQ---AEVDVAPGEFYTVVLRPGG 97 (181)
T ss_pred ccceeecCCCceeEeecCcc---cceEecCCceEEEEEcCCC
Confidence 33458899999998885433 2577799999999998754
No 25
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=25.27 E-value=3.3e+02 Score=21.13 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=37.1
Q ss_pred EEEecCCCeEEEEEecCC---------CCCCcceEEEEecCCceeeeeeeccc-ccCeEEEEEEEEEccceEEEEEEeCC
Q 045875 90 NVRVKRGSIYSLTFGTTR---------TCAQDEVLRVLVPGQSSDLPIQTLYS-INGGDTYAWAFKATSDVVKLAKRVTK 159 (216)
Q Consensus 90 ~v~t~pG~~Y~LTFsAa~---------~Ca~~~~v~vsv~~~s~~~~~qt~g~-s~Gw~t~s~~F~A~s~~t~l~F~n~g 159 (216)
.+...+|-.|++.|...+ .+.....+.-..+++.-.+...-... -.+-....|.|.+..+.|+|+|...+
T Consensus 40 ~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~p~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~T~lt~~~~~ 119 (146)
T cd08895 40 EFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELVPNERIVYTDVFDDPSLSGEMTMTWTLSPVSGGTDVTIVQSG 119 (146)
T ss_pred EEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEcCCCEEEEEEEecCCCCCceEEEEEEEEecCCCEEEEEEEeC
Confidence 466677777777775322 12112223333344433333221000 01223678999999999999996643
No 26
>PF09212 CBM27: Carbohydrate binding module 27; InterPro: IPR015295 This domain is found in carbohydrate binding proteins that bind to beta-1, 4-mannooligosaccharides, carob galactomannan, and konjac glucomannan, but not to cellulose (insoluble and soluble) or soluble birchwood xylan. The region adopts a beta sandwich structure comprising 13 beta strands with a single, small alpha-helix and a single metal atom []. ; PDB: 1OF3_A 1OF4_A 1OH4_A 1PMJ_X 1PMH_X.
Probab=25.03 E-value=1.4e+02 Score=25.76 Aligned_cols=104 Identities=13% Similarity=0.106 Sum_probs=48.8
Q ss_pred EEeCCCceEEEe-----CCcceeeEEEEec-----CCCeEEEEEec----CCCCCCcceEEEEecCCceeeeeeeccc--
Q 045875 70 FTVPRDVHAVRL-----GYEASISRNVRVK-----RGSIYSLTFGT----TRTCAQDEVLRVLVPGQSSDLPIQTLYS-- 133 (216)
Q Consensus 70 ~~VPeG~~AVeL-----G~e~sI~Q~v~t~-----pG~~Y~LTFsA----a~~Ca~~~~v~vsv~~~s~~~~~qt~g~-- 133 (216)
+..-.|..|++| |+.. -|++++. -...=+|.|++ ...-.|..+..|...+.+.++-.++...
T Consensus 37 ~~~~~g~gaLklnv~~~~~~~--W~E~ki~~~~~dls~~~~l~fDv~iP~~~~~~G~l~~~a~l~~gW~k~g~~~~~~~v 114 (170)
T PF09212_consen 37 HSGDGGSGALKLNVDFDGNND--WDELKIFKNFEDLSEYNRLEFDVYIPKNEKYSGSLKPYAALNPGWTKIGMDTTEINV 114 (170)
T ss_dssp EESSGGGSEEEEEEEE-TTST--TEEEEECCEECCGCC--EEEEEEEEEHHCCSSSEE-EEEEECTTTEEECCCSCEEEC
T ss_pred EeccCCCccEEEEeecCCCCC--cchhhhhhhhhhcCCccEEEEEEEeCCCCCCCccEEEEEEcCCChHHhccccccccc
Confidence 355568889988 5432 3444431 13344666762 2222333333454555554432211110
Q ss_pred ---------ccCeEEEE--EEEEEccceEEEEEEeCCcccccccccccccccccceeeeee-EeeeEEE
Q 045875 134 ---------INGGDTYA--WAFKATSDVVKLAKRVTKEIKENFSYNSNQHPIIIKLLEIPI-LHAQVLR 190 (216)
Q Consensus 134 ---------s~Gw~t~s--~~F~A~s~~t~l~F~n~g~~~~~~S~~~~~~~d~~~~lcGPv-lDdV~v~ 190 (216)
..++..+. .+|......+.|++.=.| ++ ...|||+ ||||+|.
T Consensus 115 ~dle~v~i~Gk~Y~k~~v~i~~~~~~~~~~lvl~ivG---------~~------~~Y~GpIYIDNV~L~ 168 (170)
T PF09212_consen 115 KDLETVTIDGKGYKKIHVSIEFDSSKKATQLVLQIVG---------SN------LDYNGPIYIDNVKLI 168 (170)
T ss_dssp CCSEEEEETTEEEEEEEEEEE--SSCCE-EEEEEEEE---------ES--------EEEEEEEEEEEEE
T ss_pred cccceEEECCeEEEEEEEEEEccccCCCCcEEEEEcc---------cc------ccccCCEEEEeEEEe
Confidence 02344444 445555566777773332 22 2368998 7999985
No 27
>KOG3527 consensus Erythrocyte membrane protein 4.1 and related proteins of the ERM family [General function prediction only]
Probab=24.47 E-value=71 Score=34.25 Aligned_cols=52 Identities=21% Similarity=0.299 Sum_probs=36.2
Q ss_pred CcccCCCCCCCCCC-CCC-CceEEe-c--CCCCCCcEEeeeEEEeeCCCCCCceeEEeCCCceEEEe
Q 045875 20 TLLPNGNFELSPKK-SNL-NKKVIL-E--KYSLPKWEISGLVEYISGGPQPGGFYFTVPRDVHAVRL 81 (216)
Q Consensus 20 nLL~NG~FE~gP~~-~n~-~~~vl~-g--~s~LPgW~i~G~VeYI~sg~~~g~m~~~VPeG~~AVeL 81 (216)
--++|| |.||-. -+. ..+... | .+.-|||-.+|.=|||.+. .|.+|.|-||-
T Consensus 860 s~~~~~--e~~~i~~t~~~t~~~~~~~~~~~~~~~~~~~g~ge~vssk--------svt~~~rtiet 916 (975)
T KOG3527|consen 860 SDVQNG--ENGGIVETQTRTMTYEAQGGENSAPPGWAEEGLGEYVSSK--------SVTQGNRTIET 916 (975)
T ss_pred ccccCC--ccCCeeEeeccccceeccCceecCCCCccccCcceeeeee--------eeccCceeEEE
Confidence 455666 666655 222 111111 1 5668999999999999984 89999999996
No 28
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=23.87 E-value=4.3e+02 Score=29.01 Aligned_cols=96 Identities=19% Similarity=0.232 Sum_probs=60.8
Q ss_pred CceeEEeCCCceEEEe-CCcce---------eeEEEEecCCCeEEEEEecCC-------CCCCcceEEEEecCCceeeee
Q 045875 66 GGFYFTVPRDVHAVRL-GYEAS---------ISRNVRVKRGSIYSLTFGTTR-------TCAQDEVLRVLVPGQSSDLPI 128 (216)
Q Consensus 66 g~m~~~VPeG~~AVeL-G~e~s---------I~Q~v~t~pG~~Y~LTFsAa~-------~Ca~~~~v~vsv~~~s~~~~~ 128 (216)
|.+-|.||.|.+-|+. -.++. -.|.+.+...-.-.|+|+-.| +|-+ .=.+..+.+
T Consensus 432 GsfCf~vppG~ytievl~~ta~~aagl~l~P~~~~veV~~~pv~ni~Fsqfranv~g~lsCl~--------tCg~a~vtl 503 (1165)
T KOG1948|consen 432 GSFCFPVPPGLYTIEVLDKTASGAAGLLLTPRLLEVEVLKNPVTNIRFSQFRANVNGHLSCLG--------TCGTATVTL 503 (1165)
T ss_pred CceeEEcCCccEEEEEeccCcccccccEeeeeeeeEEeecCcccceehhhhhhccceEEEecc--------CCCceeEEE
Confidence 7788999999999997 33332 245667777788889999222 1321 012344445
Q ss_pred eecccccCeEEEEEEEEEccceEEEEEEe--CCcccccccccccccccccceee
Q 045875 129 QTLYSINGGDTYAWAFKATSDVVKLAKRV--TKEIKENFSYNSNQHPIIIKLLE 180 (216)
Q Consensus 129 qt~g~s~Gw~t~s~~F~A~s~~t~l~F~n--~g~~~~~~S~~~~~~~d~~~~lc 180 (216)
|..- .| ++.....+++.++...+|.| || -|.-+.+|.+..|
T Consensus 504 q~la--~G-q~~~~~vk~td~~~~ftF~nilPG--------kY~~~i~d~~~wC 546 (1165)
T KOG1948|consen 504 QLLA--AG-QTLVRSVKGTDESSVFTFENILPG--------KYSARIDDNGRWC 546 (1165)
T ss_pred Eecc--cC-CcceeeEEEEeeccEEEeeccCCc--------ceEEEeccCCCce
Confidence 5441 22 55566677888888899999 66 3444555666666
No 29
>PF02941 FeThRed_A: Ferredoxin thioredoxin reductase variable alpha chain; InterPro: IPR004207 Ferredoxin thioredoxin reductase is a [4FE-4S] protein which plays an important role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin), regulating enzymes by reduction of specific disulphide groups. It catalyses the light-dependent activation of several photosynthetis enzymes. Ferredoxin thioredoxin reductase is a heterodimer of subunit a and subunit b. Subunit a is the variable subunit, and b is the catalytic chain. This family is the alpha chain.; GO: 0008937 ferredoxin-NAD(P) reductase activity, 0015979 photosynthesis, 0009536 plastid; PDB: 2PUK_B 2PVO_B 2PVG_B 1DJ7_B 2PVD_B 2PU9_B 2PUO_B.
Probab=22.32 E-value=65 Score=24.10 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=17.7
Q ss_pred eEEeCCC-ceEEEe-CCcceeeEEEEecCCCe
Q 045875 69 YFTVPRD-VHAVRL-GYEASISRNVRVKRGSI 98 (216)
Q Consensus 69 ~~~VPeG-~~AVeL-G~e~sI~Q~v~t~pG~~ 98 (216)
.|-+|+= ..+.|| |.||.|.|.++.=.|+.
T Consensus 13 Vyh~P~hr~~~fDl~G~EGev~~~v~~wkGr~ 44 (67)
T PF02941_consen 13 VYHHPEHRNPPFDLKGMEGEVKQIVTDWKGRP 44 (67)
T ss_dssp ES--TTSTTS-EE-TT-EEEEEEE-SEETTEE
T ss_pred EEeCCcccCCCccccCCEEEEEEEEeecCCcE
Confidence 3567865 579999 99999999996555543
No 30
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=22.08 E-value=2.8e+02 Score=21.35 Aligned_cols=37 Identities=30% Similarity=0.465 Sum_probs=27.8
Q ss_pred eeEEeCCCceEEEeCCc-----ceeeEEEEecCCCeEEEEEe
Q 045875 68 FYFTVPRDVHAVRLGYE-----ASISRNVRVKRGSIYSLTFG 104 (216)
Q Consensus 68 m~~~VPeG~~AVeLG~e-----~sI~Q~v~t~pG~~Y~LTFs 104 (216)
.++.||.|.|-|..-.+ ..-.-.|.+.+|+.|=+...
T Consensus 61 ~~~~v~pG~h~i~~~~~~~~~~~~~~l~~~~~~G~~yy~r~~ 102 (117)
T PF11008_consen 61 FYVEVPPGKHTISAKSEFSSSPGANSLDVTVEAGKTYYVRQD 102 (117)
T ss_pred EEEEECCCcEEEEEecCccCCCCccEEEEEEcCCCEEEEEEE
Confidence 34789999999999333 22466789999999977665
No 31
>PF00031 Cystatin: Cystatin domain; InterPro: IPR000010 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The cystatins are cysteine proteinase inhibitors belonging to MEROPS inhibitor family I25, clan IH [, , ]. They mainly inhibit peptidases belonging to peptidase families C1 (papain family) and C13 (legumain family). The cystatin family includes: The Type 1 cystatins, which are intracellular cystatins that are present in the cytosol of many cell types, but can also appear in body fluids at significant concentrations. They are single-chain polypeptides of about 100 residues, which have neither disulphide bonds nor carbohydrate side chains. The Type 2 cystatins, which are mainly extracellular secreted polypeptides synthesised with a 19-28 residue signal peptide. They are broadly distributed and found in most body fluids. The Type 3 cystatins, which are multidomain proteins. The mammalian representatives of this group are the kininogens. There are three different kininogens in mammals: H- (high molecular mass, IPR002395 from INTERPRO) and L- (low molecular mass) kininogen which are found in a number of species, and T-kininogen that is found only in rat. Unclassified cystatins. These are cystatin-like proteins found in a range of organisms: plant phytocystatins, fetuin in mammals, insect cystatins and a puff adder venom cystatin which inhibits metalloproteases of the MEROPS peptidase family M12 (astacin/adamalysin). Also a number of the cystatins-like proteins have been shown to be devoid of inhibitory activity. All true cystatins inhibit cysteine peptidases of the papain family (MEROPS peptidase family C1), and some also inhibit legumain family enzymes (MEROPS peptidase family C13). These peptidases play key roles in physiological processes, such as intracellular protein degradation (cathepsins B, H and L), are pivotal in the remodelling of bone (cathepsin K), and may be important in the control of antigen presentation (cathepsin S, mammalian legumain). Moreover, the activities of such peptidases are increased in pathophysiological conditions, such as cancer metastasis and inflammation. Additionally, such peptidases are essential for several pathogenic parasites and bacteria. Thus in animals cystatins not only have capacity to regulate normal body processes and perhaps cause disease when down-regulated, but in other organisms may also participate in defence against biotic and abiotic stress. ; GO: 0004869 cysteine-type endopeptidase inhibitor activity; PDB: 3L0R_B 2W9P_K 2W9Q_A 3S67_A 3QRD_D 1R4C_G 3GAX_A 1TIJ_B 1G96_A 3NX0_A ....
Probab=22.05 E-value=60 Score=23.48 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=15.8
Q ss_pred EecCCCeEEEEEecCCC-CC
Q 045875 92 RVKRGSIYSLTFGTTRT-CA 110 (216)
Q Consensus 92 ~t~pG~~Y~LTFsAa~~-Ca 110 (216)
.++.|..|.|+|.++++ |.
T Consensus 45 QvV~G~~Y~i~~~~~~t~C~ 64 (94)
T PF00031_consen 45 QVVAGINYYIEFEVGETNCK 64 (94)
T ss_dssp EESSSEEEEEEEEEEEEEEE
T ss_pred eecCCceEEEEEEEEccccc
Confidence 45899999999998765 75
No 32
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=21.38 E-value=3.2e+02 Score=23.68 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=14.9
Q ss_pred EEEEecCCCeEEEEEec
Q 045875 89 RNVRVKRGSIYSLTFGT 105 (216)
Q Consensus 89 Q~v~t~pG~~Y~LTFsA 105 (216)
..++..+|+.|+|+..+
T Consensus 92 ~~~~~~~G~~Y~L~V~~ 108 (298)
T PF14054_consen 92 NSFRGRPGRTYRLEVET 108 (298)
T ss_pred ccccccCCCEEEEEEEE
Confidence 45688999999999997
No 33
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=21.10 E-value=2.2e+02 Score=21.30 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=12.3
Q ss_pred EEecCCCeEEEEEecC
Q 045875 91 VRVKRGSIYSLTFGTT 106 (216)
Q Consensus 91 v~t~pG~~Y~LTFsAa 106 (216)
+...||.+|+++|...
T Consensus 62 ~~~~pG~t~~~tF~~~ 77 (99)
T TIGR02656 62 LLNSPGESYEVTFSTP 77 (99)
T ss_pred cccCCCCEEEEEeCCC
Confidence 4567899999999863
No 34
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=20.78 E-value=2.1e+02 Score=23.02 Aligned_cols=32 Identities=16% Similarity=0.425 Sum_probs=26.2
Q ss_pred EEEecCCCeEEEEEec--CCCCCCcceEEEEecC
Q 045875 90 NVRVKRGSIYSLTFGT--TRTCAQDEVLRVLVPG 121 (216)
Q Consensus 90 ~v~t~pG~~Y~LTFsA--a~~Ca~~~~v~vsv~~ 121 (216)
+|.+..|-.|.++-.+ +++|+-+..+++.+++
T Consensus 73 t~~v~kgG~y~m~V~lCn~dGCS~S~~~~I~VAD 106 (106)
T cd02848 73 TFKVGKGGRYQMQVALCNGDGCSTSAAKEIVVAD 106 (106)
T ss_pred EEEeCCCCeEEEEEEEECCCCccCcCCEEEEecC
Confidence 4668889999999886 6789999888887764
No 35
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=20.37 E-value=4e+02 Score=20.41 Aligned_cols=19 Identities=16% Similarity=0.220 Sum_probs=15.9
Q ss_pred EEEEEEEEccceEEEEEEe
Q 045875 139 TYAWAFKATSDVVKLAKRV 157 (216)
Q Consensus 139 t~s~~F~A~s~~t~l~F~n 157 (216)
+..|.|.+.+..|+|++..
T Consensus 88 ~v~~~~~~~~~gT~ltl~~ 106 (139)
T cd08894 88 RLTVTFEEQGGKTRLTWRQ 106 (139)
T ss_pred EEEEEEEECCCCEEEEEEE
Confidence 4678999989999999955
Done!