BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045877
(801 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 508 LRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKS 555
L+ L L+ S + LP +I LT LE LDLR C NL +LP I +L +
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 501 GLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLD 560
+ ++ +L L L+G + ++ P L+ L L+ C NL LP +I +L L LD
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283
Query: 561 ISECFLLDGIP 571
+ C L +P
Sbjct: 284 LRGCVNLSRLP 294
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 499 LKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTH 558
+ L+N+K L++ + S + L I +L LE LDLR C L P G L
Sbjct: 202 IANLQNLKSLKIRN----SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257
Query: 559 LDISECFLLDGIP 571
L + +C L +P
Sbjct: 258 LILKDCSNLLTLP 270
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 489 PHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPD 548
P +++ +GL N++ LRL +GI+ LP+ I+ L +L+ L +R L L
Sbjct: 169 PLASTDASGEHQGLVNLQSLRL----EWTGIRSLPASIANLQNLKSLKIRNS-PLSALGP 223
Query: 549 EIGKLKSLTHLDISECFLLDGIP 571
I L L LD+ C L P
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYP 246
>pdb|3AQI|A Chain A, H240a Variant Of Human Ferrochelatase
pdb|3AQI|B Chain B, H240a Variant Of Human Ferrochelatase
Length = 359
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 2/130 (1%)
Query: 623 EKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTER 682
E+ + + L +AF + Q S G S N + Q GRK T+ ++ T
Sbjct: 111 EEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLI 170
Query: 683 SQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLK 742
++ L++LD FP EK V +S +L + G E S + RL+
Sbjct: 171 QCFADAILKELDH--FPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLE 228
Query: 743 YLNELKIDWK 752
Y N ++ W+
Sbjct: 229 YCNPYRLVWQ 238
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 17/115 (14%)
Query: 463 KYDWFSKLEKIKVLYLGRWQ-STVDDIPHIEIE--STDYLKGLKNMKELRLLSLQGMSGI 519
Y +FS +++VL L R + T++D + + ST L G ++ L L + G+S +
Sbjct: 45 SYSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSL 102
Query: 520 QELPSEISYLTSLE---------ILDLRACYNLD---KLPDEIGKLKSLTHLDIS 562
Q+L + + L SLE + +L +NL KLP+ L +L HLD+S
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 529 LTSLEILDLRA-CYNLDKLPDEIGKLKSLTHLDISEC 564
L+SLE+L + + + LPD +L++LT LD+S+C
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 17/115 (14%)
Query: 463 KYDWFSKLEKIKVLYLGRWQ-STVDDIPHIEIE--STDYLKGLKNMKELRLLSLQGMSGI 519
Y +FS +++VL L R + T++D + + ST L G ++ L L + G+S +
Sbjct: 69 SYSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSL 126
Query: 520 QELPSEISYLTSLE---------ILDLRACYNLD---KLPDEIGKLKSLTHLDIS 562
Q+L + + L SLE + +L +NL KLP+ L +L HLD+S
Sbjct: 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 529 LTSLEILDLRA-CYNLDKLPDEIGKLKSLTHLDISEC 564
L+SLE+L + + + LPD +L++LT LD+S+C
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 504
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 17/115 (14%)
Query: 463 KYDWFSKLEKIKVLYLGRWQ-STVDDIPHIEIE--STDYLKGLKNMKELRLLSLQGMSGI 519
Y +FS +++VL L R + T++D + + ST L G ++ L L + G+S +
Sbjct: 45 SYSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSL 102
Query: 520 QELPSEISYLTSLE---------ILDLRACYNLD---KLPDEIGKLKSLTHLDIS 562
Q+L + + L SLE + +L +NL KLP+ L +L HLD+S
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 529 LTSLEILDLRA-CYNLDKLPDEIGKLKSLTHLDISEC 564
L+SLE+L + + + LPD +L++LT LD+S+C
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
>pdb|2PO7|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His
341 Replaced By Cys
pdb|2PO7|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With His
341 Replaced By Cys
Length = 359
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 2/130 (1%)
Query: 623 EKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTER 682
E+ + + L +AF + Q S G S N + Q GRK T+ ++ T
Sbjct: 111 EEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLI 170
Query: 683 SQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLK 742
+ L++LD FP EK V +S +L + G E S + RL+
Sbjct: 171 QCFADHILKELDH--FPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLE 228
Query: 743 YLNELKIDWK 752
Y N ++ W+
Sbjct: 229 YCNPYRLVWQ 238
>pdb|1HRK|A Chain A, Crystal Structure Of Human Ferrochelatase
pdb|1HRK|B Chain B, Crystal Structure Of Human Ferrochelatase
pdb|2HRC|A Chain A, 1.7 Angstrom Structure Of Human Ferrochelatase Variant
R115l
pdb|2HRC|B Chain B, 1.7 Angstrom Structure Of Human Ferrochelatase Variant
R115l
Length = 359
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 2/130 (1%)
Query: 623 EKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTER 682
E+ + + L +AF + Q S G S N + Q GRK T+ ++ T
Sbjct: 111 EEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLI 170
Query: 683 SQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLK 742
+ L++LD FP EK V +S +L + G E S + RL+
Sbjct: 171 QCFADHILKELDH--FPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLE 228
Query: 743 YLNELKIDWK 752
Y N ++ W+
Sbjct: 229 YCNPYRLVWQ 238
>pdb|2QD3|A Chain A, Wild Type Human Ferrochelatase Crystallized With Ammonium
Sulfate
pdb|2QD3|B Chain B, Wild Type Human Ferrochelatase Crystallized With Ammonium
Sulfate
pdb|2QD4|A Chain A, Wild Type Human Ferrochelatase Crystallized With Mncl2
pdb|2QD4|B Chain B, Wild Type Human Ferrochelatase Crystallized With Mncl2
pdb|2QD5|A Chain A, Structure Of Wild Type Human Ferrochelatase In Complex
With A Lead- Porphyrin Compound
pdb|2QD5|B Chain B, Structure Of Wild Type Human Ferrochelatase In Complex
With A Lead- Porphyrin Compound
pdb|3HCN|A Chain A, Hg And Protoporphyrin Bound Human Ferrochelatase
pdb|3HCN|B Chain B, Hg And Protoporphyrin Bound Human Ferrochelatase
pdb|3HCO|A Chain A, Human Ferrochelatase With Cd And Protoporphyrin Ix Bound
pdb|3HCO|B Chain B, Human Ferrochelatase With Cd And Protoporphyrin Ix Bound
pdb|3HCR|A Chain A, Human Ferrochelatase With Deuteroporphyrin And Ni Bound
pdb|3HCR|B Chain B, Human Ferrochelatase With Deuteroporphyrin And Ni Bound
Length = 359
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 2/130 (1%)
Query: 623 EKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTER 682
E+ + + L +AF + Q S G S N + Q GRK T+ ++ T
Sbjct: 111 EEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLI 170
Query: 683 SQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLK 742
+ L++LD FP EK V +S +L + G E S + RL+
Sbjct: 171 QCFADHILKELDH--FPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLE 228
Query: 743 YLNELKIDWK 752
Y N ++ W+
Sbjct: 229 YCNPYRLVWQ 238
>pdb|2QD2|A Chain A, F110a Variant Of Human Ferrochelatase With Protoheme Bound
pdb|2QD2|B Chain B, F110a Variant Of Human Ferrochelatase With Protoheme Bound
pdb|3HCP|A Chain A, Human Ferrochelatase With Mn And Deuteroporphyrin Bound
pdb|3HCP|B Chain B, Human Ferrochelatase With Mn And Deuteroporphyrin Bound
Length = 359
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 2/130 (1%)
Query: 623 EKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTER 682
E+ + + L +AF + Q S G S N + Q GRK T+ ++ T
Sbjct: 111 EEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLI 170
Query: 683 SQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLK 742
+ L++LD FP EK V +S +L + G E S + RL+
Sbjct: 171 QCFADHILKELDH--FPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLE 228
Query: 743 YLNELKIDWK 752
Y N ++ W+
Sbjct: 229 YCNPYRLVWQ 238
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 17/114 (14%)
Query: 464 YDWFSKLEKIKVLYLGRWQ-STVDDIPHIEIE--STDYLKGLKNMKELRLLSLQGMSGIQ 520
Y +FS +++VL L R + T++D + + ST L G ++ L L + G+S +Q
Sbjct: 47 YSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQ 104
Query: 521 ELPSEISYLTSLE---------ILDLRACYNLD---KLPDEIGKLKSLTHLDIS 562
+L + + L SLE + +L +NL KLP+ L +L HLD+S
Sbjct: 105 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 158
>pdb|2PNJ|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With Phe
337 Replaced By Ala
pdb|2PNJ|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With Phe
337 Replaced By Ala
Length = 359
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 2/130 (1%)
Query: 623 EKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTER 682
E+ + + L +AF + Q S G S N + Q GRK T+ ++ T
Sbjct: 111 EEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLI 170
Query: 683 SQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLK 742
+ L++LD FP EK V +S +L + G E S + RL+
Sbjct: 171 QCFADHILKELDH--FPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLE 228
Query: 743 YLNELKIDWK 752
Y N ++ W+
Sbjct: 229 YCNPYRLVWQ 238
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 17/114 (14%)
Query: 464 YDWFSKLEKIKVLYLGRWQ-STVDDIPHIEIE--STDYLKGLKNMKELRLLSLQGMSGIQ 520
Y +FS +++VL L R + T++D + + ST L G ++ L L + G+S +Q
Sbjct: 46 YSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQ 103
Query: 521 ELPSEISYLTSLE---------ILDLRACYNLD---KLPDEIGKLKSLTHLDIS 562
+L + + L SLE + +L +NL KLP+ L +L HLD+S
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
>pdb|2HRE|A Chain A, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|B Chain B, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|C Chain C, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|D Chain D, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2QD1|A Chain A, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|B Chain B, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|C Chain C, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|D Chain D, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
Length = 359
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 2/130 (1%)
Query: 623 EKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTER 682
E+ + + L +AF + Q S G S N + Q GRK T+ ++ T
Sbjct: 111 EEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLI 170
Query: 683 SQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLK 742
+ L++LD FP EK V +S +L + G E S + RL+
Sbjct: 171 QCFADHILKELDH--FPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLE 228
Query: 743 YLNELKIDWK 752
Y N ++ W+
Sbjct: 229 YCNPYRLVWQ 238
>pdb|4F4D|A Chain A, F337r Variant Of Human Ferrochelatase
pdb|4F4D|B Chain B, F337r Variant Of Human Ferrochelatase
Length = 359
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 2/130 (1%)
Query: 623 EKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTER 682
E+ + + L +AF + Q S G S N + Q GRK T+ ++ T
Sbjct: 111 EEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLI 170
Query: 683 SQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLK 742
+ L++LD FP EK V +S +L + G E S + RL+
Sbjct: 171 QCFADHILKELDH--FPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLE 228
Query: 743 YLNELKIDWK 752
Y N ++ W+
Sbjct: 229 YCNPYRLVWQ 238
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 17/114 (14%)
Query: 464 YDWFSKLEKIKVLYLGRWQ-STVDDIPHIEIE--STDYLKGLKNMKELRLLSLQGMSGIQ 520
Y +FS +++VL L R + T++D + + ST L G ++ L L + G+S +Q
Sbjct: 48 YSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQ 105
Query: 521 ELPSEISYLTSLE---------ILDLRACYNLD---KLPDEIGKLKSLTHLDIS 562
+L + + L SLE + +L +NL KLP+ L +L HLD+S
Sbjct: 106 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 159
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 17/114 (14%)
Query: 464 YDWFSKLEKIKVLYLGRWQ-STVDDIPHIEIE--STDYLKGLKNMKELRLLSLQGMSGIQ 520
Y +FS +++VL L R + T++D + + ST L G ++ L L + G+S +Q
Sbjct: 48 YSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQ 105
Query: 521 ELPSEISYLTSLE---------ILDLRACYNLD---KLPDEIGKLKSLTHLDIS 562
+L + + L SLE + +L +NL KLP+ L +L HLD+S
Sbjct: 106 KLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 159
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 17/115 (14%)
Query: 464 YDWFSKLEKIKVLYLGRWQ-STVDDIPHIEIE--STDYLKGLKNMKELRLLSLQGMSGIQ 520
Y +FS +++VL L R + T++D + + ST L G ++ L L + G+S +Q
Sbjct: 47 YSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQ 104
Query: 521 ELPSEISYLTSLE---------ILDLRACYNLD---KLPDEIGKLKSLTHLDISE 563
+L + + L SLE + +L +NL KLP+ L +L HLD+S
Sbjct: 105 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 159
>pdb|2PO5|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His
263 Replaced By Cys
pdb|2PO5|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With His
263 Replaced By Cys
Length = 359
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 2/130 (1%)
Query: 623 EKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTER 682
E+ + + L +AF + Q S G S N + Q GRK T+ ++ T
Sbjct: 111 EEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLI 170
Query: 683 SQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLK 742
+ L++LD FP EK V +S +L + G E S + RL+
Sbjct: 171 QCFADHILKELDH--FPLEKRSEVVILFSACSLPMSVVNRGDPYPQEVSATVQKVMERLE 228
Query: 743 YLNELKIDWK 752
Y N ++ W+
Sbjct: 229 YCNPYRLVWQ 238
>pdb|1OJO|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex Of The Tyr408phe Mutant With
4-sulphated Chondroitin Disaccharide
Length = 731
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 497 DYLKGLKNMKELRLL-SLQGMSGIQELPSEISYLTSLEILDLRACYNLDK 545
D K LK K++ L+ SL +G+ +P SYL++ +D A YN +K
Sbjct: 345 DVFKNLKTYKDISLMQSLLSDAGVASVP-RTSYLSAFNKMDKTAMYNAEK 393
>pdb|1LOH|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase In Complex With
Hexasaccharide Hyaluronan Substrate
pdb|1LXK|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase In Complex With
Tetrasaccharide Hyaluronan Substrate
Length = 721
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 497 DYLKGLKNMKELRLL-SLQGMSGIQELPSEISYLTSLEILDLRACYNLDK 545
D K LK K++ L+ SL +G+ +P SYL++ +D A YN +K
Sbjct: 343 DVFKNLKTYKDISLMQSLLSDAGVASVP-RTSYLSAFNKMDKTAMYNAEK 391
>pdb|1OJN|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex Of The Tyr408phe Mutant With
6-sulphated Chondroitin Disaccharide
Length = 731
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 497 DYLKGLKNMKELRLL-SLQGMSGIQELPSEISYLTSLEILDLRACYNLDK 545
D K LK K++ L+ SL +G+ +P SYL++ +D A YN +K
Sbjct: 345 DVFKNLKTYKDISLMQSLLSDAGVASVP-RTSYLSAFNKMDKTAMYNAEK 393
>pdb|1OJM|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex With Unsulphated Chondroitin
Disaccharide
Length = 729
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 497 DYLKGLKNMKELRLL-SLQGMSGIQELPSEISYLTSLEILDLRACYNLDK 545
D K LK K++ L+ SL +G+ +P SYL++ +D A YN +K
Sbjct: 343 DVFKNLKTYKDISLMQSLLSDAGVASVP-RTSYLSAFNKMDKTAMYNAEK 391
>pdb|1EGU|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase At 1.56 A Resolution
pdb|1F9G|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase Cocrystallized With Ascorbic Acid
pdb|1C82|A Chain A, Mechanism Of Hyaluronan Binding And Degradation: Structure
Of Streptococcus Pneumoniae Hyaluronate Lyase In Complex
With Hyaluronic Acid Disaccharide At 1.7 A Resolution
pdb|1OJP|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex With 6-sulphated Chondroitin
Disaccharide
pdb|1W3Y|A Chain A, Crystal Structure Of S. Pneumoniae Hyaluronate Lyase In
Complex With Palmitoyl-Vitamin C
pdb|2BRP|A Chain A, Crystal Structure Of S.Pneumoniae Hyaluronate Lyase In
Complex With W249b
pdb|2BRV|X Chain X, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 70percent Saturated Malonate.
pdb|2BRW|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 30percent Pegmme.
pdb|2BRW|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 30percent Pegmme
Length = 731
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 497 DYLKGLKNMKELRLL-SLQGMSGIQELPSEISYLTSLEILDLRACYNLDK 545
D K LK K++ L+ SL +G+ +P SYL++ +D A YN +K
Sbjct: 345 DVFKNLKTYKDISLMQSLLSDAGVASVP-RTSYLSAFNKMDKTAMYNAEK 393
>pdb|1N7N|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W292a Mutant
Length = 721
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 497 DYLKGLKNMKELRLL-SLQGMSGIQELPSEISYLTSLEILDLRACYNLDK 545
D K LK K++ L+ SL +G+ +P SYL++ +D A YN +K
Sbjct: 343 DVFKNLKTYKDISLMQSLLSDAGVASVP-RTSYLSAFNKMDKTAMYNAEK 391
>pdb|1N7Q|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W291aW292A
DOUBLE MUTANT Complex With Hyaluronan Hexasacchride
Length = 721
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 497 DYLKGLKNMKELRLL-SLQGMSGIQELPSEISYLTSLEILDLRACYNLDK 545
D K LK K++ L+ SL +G+ +P SYL++ +D A YN +K
Sbjct: 343 DVFKNLKTYKDISLMQSLLSDAGVASVP-RTSYLSAFNKMDKTAMYNAEK 391
>pdb|1N7O|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase F343v Mutant
Length = 721
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 497 DYLKGLKNMKELRLL-SLQGMSGIQELPSEISYLTSLEILDLRACYNLDK 545
D K LK K++ L+ SL +G+ +P SYL++ +D A YN +K
Sbjct: 343 DVFKNLKTYKDISLMQSLLSDAGVASVP-RTSYLSAFNKMDKTAMYNAEK 391
>pdb|1N7P|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W292aF343V
Double Mutant
Length = 721
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 497 DYLKGLKNMKELRLL-SLQGMSGIQELPSEISYLTSLEILDLRACYNLDK 545
D K LK K++ L+ SL +G+ +P SYL++ +D A YN +K
Sbjct: 343 DVFKNLKTYKDISLMQSLLSDAGVASVP-RTSYLSAFNKMDKTAMYNAEK 391
>pdb|1N7R|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase
W291a/w292a/f343v Mutant Complex With Hexasaccharide
Hyaluronan
Length = 721
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 497 DYLKGLKNMKELRLL-SLQGMSGIQELPSEISYLTSLEILDLRACYNLDK 545
D K LK K++ L+ SL +G+ +P SYL++ +D A YN +K
Sbjct: 343 DVFKNLKTYKDISLMQSLLSDAGVASVP-RTSYLSAFNKMDKTAMYNAEK 391
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%)
Query: 500 KGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHL 559
GL N L +SL E+P I L +L IL L +P E+G +SL L
Sbjct: 481 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 540
Query: 560 DISECFLLDGIP 571
D++ IP
Sbjct: 541 DLNTNLFNGTIP 552
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%)
Query: 500 KGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHL 559
GL N L +SL E+P I L +L IL L +P E+G +SL L
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543
Query: 560 DISECFLLDGIP 571
D++ IP
Sbjct: 544 DLNTNLFNGTIP 555
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 508 LRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIG 551
L L L G S + ELP+EI L++L +LDL + L LP E+G
Sbjct: 249 LTRLYLNGNS-LTELPAEIKNLSNLRVLDL-SHNRLTSLPAELG 290
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,738,294
Number of Sequences: 62578
Number of extensions: 859873
Number of successful extensions: 2169
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 2122
Number of HSP's gapped (non-prelim): 74
length of query: 801
length of database: 14,973,337
effective HSP length: 107
effective length of query: 694
effective length of database: 8,277,491
effective search space: 5744578754
effective search space used: 5744578754
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)