Query 045877
Match_columns 801
No_of_seqs 594 out of 4274
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:24:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.1E-52 2.4E-57 494.1 16.6 433 76-651 273-731 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.6E-46 7.8E-51 462.6 29.2 555 79-797 311-904 (1153)
3 PLN00113 leucine-rich repeat r 100.0 2.6E-29 5.6E-34 311.9 18.1 354 416-799 157-560 (968)
4 PLN00113 leucine-rich repeat r 100.0 6.8E-29 1.5E-33 308.2 18.8 347 416-800 229-585 (968)
5 KOG4194 Membrane glycoprotein 99.9 4.1E-28 8.8E-33 257.7 2.9 325 415-799 94-429 (873)
6 KOG0444 Cytoskeletal regulator 99.9 9.7E-27 2.1E-31 248.2 -0.9 331 401-797 32-373 (1255)
7 KOG4194 Membrane glycoprotein 99.9 1.5E-25 3.3E-30 238.2 4.4 312 426-799 81-405 (873)
8 KOG0444 Cytoskeletal regulator 99.9 2E-23 4.4E-28 223.0 -4.1 330 425-799 9-352 (1255)
9 KOG0472 Leucine-rich repeat pr 99.8 1.7E-23 3.8E-28 213.9 -6.4 344 415-799 129-541 (565)
10 KOG0618 Serine/threonine phosp 99.8 4.4E-21 9.5E-26 215.1 -2.5 344 423-798 21-488 (1081)
11 KOG0472 Leucine-rich repeat pr 99.8 2.5E-21 5.5E-26 198.2 -6.1 344 415-799 83-471 (565)
12 PLN03210 Resistant to P. syrin 99.8 5.9E-18 1.3E-22 211.1 19.4 127 610-747 777-906 (1153)
13 KOG4237 Extracellular matrix p 99.7 2.1E-19 4.5E-24 184.2 -2.1 214 413-650 81-359 (498)
14 PF00931 NB-ARC: NB-ARC domain 99.7 4.2E-19 9.2E-24 189.0 -5.6 159 79-277 116-285 (287)
15 PRK15387 E3 ubiquitin-protein 99.7 3.7E-16 8E-21 181.6 15.0 234 424-755 202-435 (788)
16 PRK15387 E3 ubiquitin-protein 99.6 1E-15 2.3E-20 177.9 15.1 241 423-759 222-462 (788)
17 PRK15370 E3 ubiquitin-protein 99.6 2.4E-16 5.2E-21 184.4 9.2 250 424-755 179-428 (754)
18 KOG0618 Serine/threonine phosp 99.6 2.7E-17 5.9E-22 185.0 -3.7 284 417-770 193-487 (1081)
19 PRK15370 E3 ubiquitin-protein 99.6 2.7E-15 5.9E-20 175.6 9.6 228 423-726 199-428 (754)
20 KOG4237 Extracellular matrix p 99.5 3.2E-16 6.9E-21 161.0 -4.9 128 425-565 69-199 (498)
21 KOG0617 Ras suppressor protein 99.5 2E-16 4.4E-21 144.6 -5.9 157 446-627 32-189 (264)
22 cd00116 LRR_RI Leucine-rich re 99.5 1.8E-15 3.8E-20 163.7 0.2 203 499-730 74-295 (319)
23 KOG0617 Ras suppressor protein 99.5 8.7E-16 1.9E-20 140.5 -3.6 161 467-654 29-190 (264)
24 cd00116 LRR_RI Leucine-rich re 99.4 4.5E-14 9.7E-19 152.8 2.2 266 417-725 17-319 (319)
25 KOG0532 Leucine-rich repeat (L 99.0 1.3E-11 2.9E-16 132.8 -2.8 197 470-724 74-271 (722)
26 KOG4658 Apoptotic ATPase [Sign 99.0 2.9E-10 6.2E-15 135.8 5.6 153 447-620 523-677 (889)
27 KOG0532 Leucine-rich repeat (L 98.9 5.7E-11 1.2E-15 128.1 -3.0 178 420-626 72-249 (722)
28 KOG1909 Ran GTPase-activating 98.9 1.4E-10 3E-15 118.6 -3.0 265 413-726 20-311 (382)
29 COG4886 Leucine-rich repeat (L 98.8 5.6E-09 1.2E-13 116.5 7.9 197 427-654 97-294 (394)
30 KOG1259 Nischarin, modulator o 98.8 1.3E-09 2.7E-14 108.9 2.0 124 606-770 279-410 (490)
31 PLN03150 hypothetical protein; 98.8 1.1E-08 2.4E-13 119.9 8.3 107 472-592 419-526 (623)
32 KOG1259 Nischarin, modulator o 98.7 2.4E-09 5.1E-14 107.0 0.9 142 545-730 275-416 (490)
33 PLN03150 hypothetical protein; 98.7 2.5E-08 5.5E-13 116.8 9.6 112 448-570 419-531 (623)
34 COG4886 Leucine-rich repeat (L 98.7 1.3E-08 2.8E-13 113.6 6.3 75 507-584 141-215 (394)
35 KOG1909 Ran GTPase-activating 98.7 3.7E-09 8.1E-14 108.3 1.4 237 465-755 24-283 (382)
36 KOG3207 Beta-tubulin folding c 98.7 4.5E-09 9.8E-14 110.5 1.7 217 416-652 114-341 (505)
37 KOG3207 Beta-tubulin folding c 98.7 2.3E-09 5.1E-14 112.6 -0.4 192 502-754 117-313 (505)
38 PF14580 LRR_9: Leucine-rich r 98.7 8.3E-09 1.8E-13 99.4 2.6 131 467-645 15-148 (175)
39 PF14580 LRR_9: Leucine-rich r 98.6 3.7E-08 8.1E-13 94.9 4.5 128 446-590 18-152 (175)
40 KOG0531 Protein phosphatase 1, 98.4 7.6E-08 1.7E-12 107.8 2.0 201 468-730 69-272 (414)
41 KOG0531 Protein phosphatase 1, 98.4 6.6E-08 1.4E-12 108.3 1.0 198 420-651 69-269 (414)
42 PF13855 LRR_8: Leucine rich r 98.3 2E-07 4.4E-12 73.6 2.1 58 424-481 2-59 (61)
43 PF13855 LRR_8: Leucine rich r 98.3 3.2E-07 7E-12 72.5 2.8 59 507-565 2-60 (61)
44 KOG2120 SCF ubiquitin ligase, 98.1 3.3E-08 7.2E-13 99.0 -8.3 136 606-770 229-374 (419)
45 KOG1859 Leucine-rich repeat pr 98.0 9.5E-08 2.1E-12 106.1 -8.2 181 415-624 101-292 (1096)
46 COG5238 RNA1 Ran GTPase-activa 98.0 1.2E-06 2.6E-11 87.0 -0.1 231 468-755 27-285 (388)
47 KOG1859 Leucine-rich repeat pr 98.0 2.7E-07 5.9E-12 102.6 -5.1 170 464-650 102-292 (1096)
48 COG5238 RNA1 Ran GTPase-activa 98.0 8.9E-07 1.9E-11 87.9 -1.2 267 415-729 22-319 (388)
49 KOG2982 Uncharacterized conser 97.9 3.9E-06 8.4E-11 84.5 2.4 62 504-565 69-132 (418)
50 KOG4579 Leucine-rich repeat (L 97.8 7.1E-06 1.5E-10 73.5 0.5 114 422-549 26-141 (177)
51 KOG2120 SCF ubiquitin ligase, 97.7 3.4E-06 7.3E-11 84.9 -2.3 58 424-481 186-244 (419)
52 KOG2982 Uncharacterized conser 97.5 2.6E-05 5.7E-10 78.7 1.1 133 609-770 69-210 (418)
53 PRK15386 type III secretion pr 97.5 0.00045 9.8E-09 75.0 9.9 76 467-565 48-123 (426)
54 KOG3665 ZYG-1-like serine/thre 97.4 7.6E-05 1.6E-09 87.6 2.5 135 506-650 122-263 (699)
55 PRK15386 type III secretion pr 97.4 0.00034 7.4E-09 75.9 7.2 85 443-550 48-134 (426)
56 KOG1924 RhoA GTPase effector D 97.3 0.00035 7.6E-09 78.4 6.3 14 119-132 652-665 (1102)
57 KOG3665 ZYG-1-like serine/thre 97.2 0.00026 5.7E-09 83.1 4.6 136 420-568 119-264 (699)
58 KOG4579 Leucine-rich repeat (L 97.2 4.9E-05 1.1E-09 68.3 -1.1 94 419-526 49-142 (177)
59 KOG1644 U2-associated snRNP A' 97.2 0.00033 7.1E-09 67.3 4.3 104 424-539 43-149 (233)
60 PF12799 LRR_4: Leucine Rich r 97.2 0.00052 1.1E-08 49.8 4.3 18 499-516 17-34 (44)
61 PF12799 LRR_4: Leucine Rich r 97.2 0.00022 4.8E-09 51.8 2.2 40 688-729 1-40 (44)
62 KOG1924 RhoA GTPase effector D 97.0 0.00076 1.6E-08 75.8 5.3 18 232-250 706-725 (1102)
63 KOG1644 U2-associated snRNP A' 96.9 0.0012 2.5E-08 63.6 4.7 58 507-566 43-100 (233)
64 KOG4341 F-box protein containi 96.7 0.00012 2.5E-09 77.6 -3.6 90 466-564 159-252 (483)
65 KOG2739 Leucine-rich acidic nu 96.5 0.0016 3.4E-08 65.5 2.3 111 467-591 39-156 (260)
66 KOG2675 Adenylate cyclase-asso 96.4 0.0025 5.4E-08 67.5 3.6 34 71-109 256-289 (480)
67 KOG2739 Leucine-rich acidic nu 96.3 0.0019 4.1E-08 64.9 1.9 63 503-567 40-104 (260)
68 KOG4341 F-box protein containi 96.0 0.0004 8.8E-09 73.6 -4.9 65 468-541 187-253 (483)
69 PF13306 LRR_5: Leucine rich r 95.5 0.025 5.3E-07 51.8 5.5 39 442-481 7-45 (129)
70 PF13306 LRR_5: Leucine rich r 95.4 0.025 5.4E-07 51.8 5.3 121 418-556 7-128 (129)
71 KOG1947 Leucine rich repeat pr 95.2 0.0024 5.2E-08 73.1 -3.0 37 608-644 292-328 (482)
72 KOG2123 Uncharacterized conser 94.8 0.0049 1.1E-07 62.2 -1.5 36 501-536 83-123 (388)
73 PF01213 CAP_N: Adenylate cycl 94.5 0.011 2.5E-07 62.2 0.2 29 76-109 259-287 (312)
74 KOG2123 Uncharacterized conser 94.4 0.0031 6.7E-08 63.5 -3.9 81 504-592 17-99 (388)
75 PF00560 LRR_1: Leucine Rich R 93.2 0.035 7.6E-07 33.6 0.6 19 556-575 2-20 (22)
76 PF00560 LRR_1: Leucine Rich R 92.7 0.048 1.1E-06 32.9 0.8 9 508-516 2-10 (22)
77 KOG1947 Leucine rich repeat pr 92.2 0.11 2.5E-06 59.2 3.7 67 467-543 239-308 (482)
78 KOG0473 Leucine-rich repeat pr 91.7 0.0072 1.6E-07 59.4 -5.7 92 462-567 33-124 (326)
79 COG5178 PRP8 U5 snRNP spliceos 88.9 0.3 6.5E-06 57.8 3.0 8 316-323 256-263 (2365)
80 KOG4308 LRR-containing protein 88.7 0.014 3.1E-07 65.9 -7.6 44 607-650 257-303 (478)
81 KOG0473 Leucine-rich repeat pr 88.2 0.016 3.5E-07 57.0 -6.5 63 467-542 61-123 (326)
82 PF13504 LRR_7: Leucine rich r 87.6 0.34 7.3E-06 27.2 1.2 14 714-727 2-15 (17)
83 KOG3864 Uncharacterized conser 84.4 0.18 3.9E-06 49.0 -1.5 78 714-794 102-184 (221)
84 smart00369 LRR_TYP Leucine-ric 83.7 0.73 1.6E-05 28.9 1.6 22 712-733 1-22 (26)
85 smart00370 LRR Leucine-rich re 83.7 0.73 1.6E-05 28.9 1.6 22 712-733 1-22 (26)
86 KOG2675 Adenylate cyclase-asso 82.6 1.2 2.5E-05 48.1 3.4 8 352-359 379-386 (480)
87 PF05308 Mito_fiss_reg: Mitoch 81.7 1.9 4.2E-05 44.2 4.5 6 104-109 237-242 (253)
88 COG5178 PRP8 U5 snRNP spliceos 78.8 1.7 3.8E-05 51.8 3.4 8 263-270 224-231 (2365)
89 smart00370 LRR Leucine-rich re 78.8 0.86 1.9E-05 28.6 0.6 21 423-443 2-22 (26)
90 smart00369 LRR_TYP Leucine-ric 78.8 0.86 1.9E-05 28.6 0.6 21 423-443 2-22 (26)
91 KOG3864 Uncharacterized conser 78.1 0.7 1.5E-05 45.1 0.0 64 500-563 119-185 (221)
92 KOG4308 LRR-containing protein 75.5 0.15 3.2E-06 57.8 -6.3 182 413-626 105-305 (478)
93 smart00364 LRR_BAC Leucine-ric 65.6 4.4 9.5E-05 25.6 1.5 18 688-705 2-19 (26)
94 PF01698 FLO_LFY: Floricaula / 60.6 2.8 6.1E-05 44.7 0.0 25 100-124 82-106 (386)
95 KOG1925 Rac1 GTPase effector F 58.7 17 0.00036 40.0 5.3 18 314-331 509-526 (817)
96 KOG4242 Predicted myosin-I-bin 56.0 23 0.0005 39.3 5.8 133 506-648 165-310 (553)
97 PF13516 LRR_6: Leucine Rich r 55.5 4.2 9.1E-05 24.9 0.2 21 423-443 2-22 (24)
98 smart00367 LRR_CC Leucine-rich 53.2 10 0.00022 23.8 1.6 17 758-774 1-17 (26)
99 smart00365 LRR_SD22 Leucine-ri 49.1 12 0.00026 23.7 1.4 17 712-728 1-17 (26)
100 PRK14950 DNA polymerase III su 45.4 59 0.0013 38.3 7.7 23 174-196 519-541 (585)
101 PRK00080 ruvB Holliday junctio 41.9 40 0.00088 36.3 5.3 106 178-305 203-311 (328)
102 smart00368 LRR_RI Leucine rich 39.7 21 0.00046 22.8 1.6 13 471-483 2-14 (28)
103 PRK04841 transcriptional regul 37.9 44 0.00095 41.6 5.4 81 229-330 251-333 (903)
104 PF14162 YozD: YozD-like prote 35.9 41 0.00088 24.8 2.6 32 268-303 21-52 (57)
105 KOG2391 Vacuolar sorting prote 34.9 70 0.0015 33.9 5.2 12 291-302 321-332 (365)
106 PRK15313 autotransport protein 33.5 40 0.00087 40.8 3.7 6 204-209 678-683 (955)
107 TIGR00635 ruvB Holliday juncti 33.3 75 0.0016 33.7 5.6 103 179-305 183-290 (305)
108 KOG0559 Dihydrolipoamide succi 33.1 64 0.0014 34.4 4.6 10 100-109 258-267 (457)
109 PF03276 Gag_spuma: Spumavirus 31.9 94 0.002 35.1 5.9 10 176-185 350-359 (582)
110 PF01698 FLO_LFY: Floricaula / 31.3 16 0.00035 39.3 0.0 7 78-84 50-56 (386)
111 KOG3763 mRNA export factor TAP 28.8 24 0.00052 39.9 0.8 74 688-767 218-309 (585)
112 PF07462 MSP1_C: Merozoite sur 27.9 1.1E+02 0.0024 34.6 5.6 8 288-295 474-481 (574)
113 PRK12270 kgd alpha-ketoglutara 26.0 2.1E+02 0.0045 35.4 7.7 12 181-192 247-258 (1228)
114 PRK14954 DNA polymerase III su 25.3 1.3E+02 0.0028 35.5 6.1 17 228-244 560-577 (620)
115 cd04441 DEP_2_DEP6 DEP (Dishev 22.6 1.4E+02 0.003 25.1 4.1 39 261-307 35-73 (85)
116 KOG2677 Stoned B synaptic vesi 21.1 2.7E+02 0.0059 32.2 7.0 6 79-84 134-139 (922)
117 KOG1922 Rho GTPase effector BN 20.2 1.2E+02 0.0025 37.6 4.6 8 125-132 435-442 (833)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-52 Score=494.11 Aligned_cols=433 Identities=22% Similarity=0.304 Sum_probs=322.7
Q ss_pred CCCcchhhcccCCCCCCCcceeecCcchhhHhhhhccceeeCCCCChhH---HHHHHHHhhhcccccccccccchhhhhH
Q 045877 76 GNCWDYVIISNNKGKISSSEQIKKNEEKDASEADQSVQVHPLNQLDHDL---IYMQYALKRLKGFEGTFGKSIQDLKDDL 152 (801)
Q Consensus 76 ~~~w~~l~~~~~~~~~~s~~~vttr~~~~~~~~~~~~~~~~l~~l~~~~---lf~~~af~~~~~~~~~~~~~~~~~~~~~ 152 (801)
...|+.+..+++....|+++++|||.+.||..+..+...++++.|..+| ||.+.||......
T Consensus 273 ~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~--------------- 337 (889)
T KOG4658|consen 273 EVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGS--------------- 337 (889)
T ss_pred cccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccc---------------
Confidence 3448889999988888999999999999999833378999999999999 9999888864411
Q ss_pred HHHHhhhccCCccchhhhhhhHHHHHHHHHHHHHhCCCCCcc----cCCCCCchhHHhhhccCCCC------CCCCcccc
Q 045877 153 ELVLTSQATGSKSVQEVETLQDEIRRISQKFLNLKSKIPPVN----SSSSDDSDAQQRRRINQSKD------LPNMADKT 222 (801)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~kc~GlPlai----~~~l~~~~~~~W~~~l~~~~------~~~~~~~~ 222 (801)
++.+.++|++|++||+|+|||+ +.|..+.+.++|+++.+... .+++.
T Consensus 338 --------------------~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~--- 394 (889)
T KOG4658|consen 338 --------------------HPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME--- 394 (889)
T ss_pred --------------------cccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh---
Confidence 2448999999999999999995 23445588889999877631 22222
Q ss_pred ccccchhHHHHHHhhhccC-CCccccceecccCCCceechhhHHHHHHHcCCCcccccCCCChHHHHHHHHHHHHhcCcc
Q 045877 223 RFKEHDFFIEFKKIFQSLG-NDQSCLLCFAVFPENAVIKKRLLVNWWIGEGFLKERIQGENSAEKAADKLLREFEEKGFI 301 (801)
Q Consensus 223 ~~~~~~i~~~L~~SYd~L~-~~K~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~~~~~~~L~~r~ll 301 (801)
+.|+.+|++|||.|| ++|.||+|||+||+||.|++++||.+|+||||+.+...+ ++++++|+.|+++|+++||+
T Consensus 395 ----~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~-~~~~d~G~~~i~~LV~~~Ll 469 (889)
T KOG4658|consen 395 ----ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGG-ETAEDVGYDYIEELVRASLL 469 (889)
T ss_pred ----hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccc-cchhcchHHHHHHHHHHHHH
Confidence 469999999999999 999999999999999999999999999999999995544 99999999999999999999
Q ss_pred cccccccCCccceEEechhHHHHHHHHhh-----cCCceeecCCCCC-cccccccccceeeeeeecccCCCcchhhhHHH
Q 045877 302 LPVDKKHRGVANSFRMSPLVRSAVITLAK-----ENNFFHFDSEGIP-TMNFQKYETFKRACLVYDHKEGSVPLRLEQSA 375 (801)
Q Consensus 302 ~~~~~~~~~~~~~~~mHdlv~dl~~~~a~-----~e~f~~~~~~~~~-~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~ 375 (801)
+..+.. ++..+|+|||+|||||.++|+ +|+++.-.+.... ......+...||+++..
T Consensus 470 ~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~--------------- 532 (889)
T KOG4658|consen 470 IEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMN--------------- 532 (889)
T ss_pred hhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEec---------------
Confidence 998765 566799999999999999999 5554332211111 11111233445555443
Q ss_pred HHHHHHHHHHHhhhcCcchhhhhhhhhchhcccCCCcchhhhhhhhccccccccccchhhcchhhhhhccccCceeeecC
Q 045877 376 IKLAAMELLEEKRLGEDNQKAVQFAESMALFNFGEKPEQKAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNV 455 (801)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~ 455 (801)
|++..+.... ..+.|++|.+.
T Consensus 533 ---------------------------------------------------------~~~~~~~~~~--~~~~L~tLll~ 553 (889)
T KOG4658|consen 533 ---------------------------------------------------------NKIEHIAGSS--ENPKLRTLLLQ 553 (889)
T ss_pred ---------------------------------------------------------cchhhccCCC--CCCccceEEEe
Confidence 3322211111 23478899988
Q ss_pred Ccc--cCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCC
Q 045877 456 SEE--FPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLE 533 (801)
Q Consensus 456 ~n~--i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~ 533 (801)
.|. +..+...+|..++.|+||||++|.- ...+|..+++|.+||||+|+++ .+..+|..+++|..|.
T Consensus 554 ~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-----------l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 554 RNSDWLLEISGEFFRSLPLLRVLDLSGNSS-----------LSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLI 621 (889)
T ss_pred ecchhhhhcCHHHHhhCcceEEEECCCCCc-----------cCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhh
Confidence 886 7888889999999999999998742 2478999999999999999995 7789999999999999
Q ss_pred EEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccC
Q 045877 534 ILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHL 613 (801)
Q Consensus 534 ~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L 613 (801)
+|++.++.....+|..+..|.+|++|.+..-... .--..++.+.+|++|..+.+.... . .....+..+++|
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~-~~~~~l~el~~Le~L~~ls~~~~s-------~-~~~e~l~~~~~L 692 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALS-NDKLLLKELENLEHLENLSITISS-------V-LLLEDLLGMTRL 692 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccc-cchhhHHhhhcccchhhheeecch-------h-HhHhhhhhhHHH
Confidence 9999998777777887888999999998765411 111123334444444422243332 1 122334445554
Q ss_pred C----eeEeecccccccccChhhhhcccCCcEEEeeccCCCC
Q 045877 614 R----KLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSA 651 (801)
Q Consensus 614 ~----~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 651 (801)
+ .+.+.++.... ....+..+.+|+.|.+.++.+..
T Consensus 693 ~~~~~~l~~~~~~~~~---~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 693 RSLLQSLSIEGCSKRT---LISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred HHHhHhhhhcccccce---eecccccccCcceEEEEcCCCch
Confidence 4 33332222111 15678889999999999888764
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.6e-46 Score=462.61 Aligned_cols=555 Identities=16% Similarity=0.179 Sum_probs=381.7
Q ss_pred cchhhcccCCCCCCCcceeecCcchhhHhhhhccceeeCCCCChhH---HHHHHHHhhhcccccccccccchhhhhHHHH
Q 045877 79 WDYVIISNNKGKISSSEQIKKNEEKDASEADQSVQVHPLNQLDHDL---IYMQYALKRLKGFEGTFGKSIQDLKDDLELV 155 (801)
Q Consensus 79 w~~l~~~~~~~~~~s~~~vttr~~~~~~~~~~~~~~~~l~~l~~~~---lf~~~af~~~~~~~~~~~~~~~~~~~~~~~~ 155 (801)
|+.+.........|++|+||||...++..++ ..++|+|+.++++| +|+++||+...
T Consensus 311 l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~-~~~~~~v~~l~~~ea~~LF~~~Af~~~~-------------------- 369 (1153)
T PLN03210 311 LDALAGQTQWFGSGSRIIVITKDKHFLRAHG-IDHIYEVCLPSNELALEMFCRSAFKKNS-------------------- 369 (1153)
T ss_pred HHHHHhhCccCCCCcEEEEEeCcHHHHHhcC-CCeEEEecCCCHHHHHHHHHHHhcCCCC--------------------
Confidence 4444443344457999999999999998766 67899999999988 99999997543
Q ss_pred HhhhccCCccchhhhhhhHHHHHHHHHHHHHhCCCCCcc---cCCCCCchhHHhhhccCCCCCCCCccccccccchhHHH
Q 045877 156 LTSQATGSKSVQEVETLQDEIRRISQKFLNLKSKIPPVN---SSSSDDSDAQQRRRINQSKDLPNMADKTRFKEHDFFIE 232 (801)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~kc~GlPlai---~~~l~~~~~~~W~~~l~~~~~~~~~~~~~~~~~~i~~~ 232 (801)
.++++.+++++|+++|+|+|||+ |..+.+++..+|++++++.... . +.+|+.+
T Consensus 370 ----------------~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~-~-------~~~I~~~ 425 (1153)
T PLN03210 370 ----------------PPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNG-L-------DGKIEKT 425 (1153)
T ss_pred ----------------CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhC-c-------cHHHHHH
Confidence 13678999999999999999995 4455568999999988763211 1 1359999
Q ss_pred HHHhhhccC--CCccccceecccCCCceechhhHHHHHHHcCCCcccccCCCChHHHHHHHHHHHHhcCcccccccccCC
Q 045877 233 FKKIFQSLG--NDQSCLLCFAVFPENAVIKKRLLVNWWIGEGFLKERIQGENSAEKAADKLLREFEEKGFILPVDKKHRG 310 (801)
Q Consensus 233 L~~SYd~L~--~~K~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~~~~~~~L~~r~ll~~~~~~~~~ 310 (801)
|++|||+|+ ..|.||+||||||.++.+ +.|..|++++.+... ..++.|+++|||+....
T Consensus 426 L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~~------------~~l~~L~~ksLi~~~~~---- 486 (1153)
T PLN03210 426 LRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDVN------------IGLKNLVDKSLIHVRED---- 486 (1153)
T ss_pred HHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCch------------hChHHHHhcCCEEEcCC----
Confidence 999999998 599999999999998744 457788887655432 13889999999987532
Q ss_pred ccceEEechhHHHHHHHHhhcCCceeecCCCCCcccccccccceeeeeeecccCCCcchhhhHHHHHHHHHHHHHHhhhc
Q 045877 311 VANSFRMSPLVRSAVITLAKENNFFHFDSEGIPTMNFQKYETFKRACLVYDHKEGSVPLRLEQSAIKLAAMELLEEKRLG 390 (801)
Q Consensus 311 ~~~~~~mHdlv~dl~~~~a~~e~f~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (801)
+++|||++|+||+.+++++.- . +.+.+++|...+- ++..... .+
T Consensus 487 ---~~~MHdLl~~~~r~i~~~~~~-~-------------~~~r~~l~~~~di------------------~~vl~~~-~g 530 (1153)
T PLN03210 487 ---IVEMHSLLQEMGKEIVRAQSN-E-------------PGEREFLVDAKDI------------------CDVLEDN-TG 530 (1153)
T ss_pred ---eEEhhhHHHHHHHHHHHhhcC-C-------------CCcceeEeCHHHH------------------HHHHHhC-cc
Confidence 689999999999999988641 0 1133344432100 0000000 00
Q ss_pred CcchhhhhhhhhchhcccCCCc--chhhhhhhhccccccccccchh------hcchhhhhhccc-cCceeeecCCcccCC
Q 045877 391 EDNQKAVQFAESMALFNFGEKP--EQKAVEFEKIKKLFNFSLSLEE------IENKAKDCAMKR-GRIETLFNVSEEFPE 461 (801)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~~~~~~~-~~L~~L~l~~n~i~~ 461 (801)
... ...+.+...+.. ......|..+++|+.|.+..+. +....|..|..+ .+|+.|...++.+..
T Consensus 531 ~~~-------v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~ 603 (1153)
T PLN03210 531 TKK-------VLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC 603 (1153)
T ss_pred cce-------eeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC
Confidence 000 000001111111 1234568889999999987664 333445555544 458889888888877
Q ss_pred CChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCC
Q 045877 462 FKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACY 541 (801)
Q Consensus 462 ~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~ 541 (801)
++.. | .+.+|+.|+|++|.+ ..++..+..+++|++|+|++|..++.+|. ++.+++|++|+|++|.
T Consensus 604 lP~~-f-~~~~L~~L~L~~s~l------------~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~ 668 (1153)
T PLN03210 604 MPSN-F-RPENLVKLQMQGSKL------------EKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCS 668 (1153)
T ss_pred CCCc-C-CccCCcEEECcCccc------------cccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCC
Confidence 6544 3 578999999999988 35677888999999999999877888885 8899999999999998
Q ss_pred CCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecc
Q 045877 542 NLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININ 621 (801)
Q Consensus 542 ~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n 621 (801)
....+|..++++++|++|++++|...+.+|..+ ++++|+.|+ ++++.. ...++. ...+|+.|+|++|
T Consensus 669 ~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~---Lsgc~~------L~~~p~---~~~nL~~L~L~~n 735 (1153)
T PLN03210 669 SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN---LSGCSR------LKSFPD---ISTNISWLDLDET 735 (1153)
T ss_pred CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe---CCCCCC------cccccc---ccCCcCeeecCCC
Confidence 899999999999999999999998788888766 788899888 666540 112222 2467899999999
Q ss_pred cccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCC-CC
Q 045877 622 SEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCF-PD 700 (801)
Q Consensus 622 ~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n-~~ 700 (801)
.+... +..+ .+++|+.|.+..+........ . . .+.......+++|+.|+|++| ..
T Consensus 736 ~i~~l---P~~~-~l~~L~~L~l~~~~~~~l~~~-~------------~-------~l~~~~~~~~~sL~~L~Ls~n~~l 791 (1153)
T PLN03210 736 AIEEF---PSNL-RLENLDELILCEMKSEKLWER-V------------Q-------PLTPLMTMLSPSLTRLFLSDIPSL 791 (1153)
T ss_pred ccccc---cccc-cccccccccccccchhhcccc-c------------c-------ccchhhhhccccchheeCCCCCCc
Confidence 87643 2222 567888888766432211000 0 0 000111112345666666654 34
Q ss_pred CCCCcccCCCCCCCccEEEeeCCc-CCCCCCC-cccccceeccc-------------ccccccccccccc------CcCC
Q 045877 701 EKLPSWVHPYSFKNLKNLYIRGGR-LNSLEGS-EWETVKVLRLK-------------YLNELKIDWKGLQ------ELFP 759 (801)
Q Consensus 701 ~~lp~~l~~~~l~~L~~L~L~~n~-l~~~~~~-~f~~L~~l~L~-------------~L~~L~l~~n~l~------~~~p 759 (801)
..+|.++. ++++|+.|+|++|. +..++.. .+++|+.+++. +|+.|++++|.++ +.++
T Consensus 792 ~~lP~si~--~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~ 869 (1153)
T PLN03210 792 VELPSSIQ--NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFS 869 (1153)
T ss_pred cccChhhh--CCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCC
Confidence 44565554 66666666666653 3333321 23444444443 4566777777775 5688
Q ss_pred CCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcc
Q 045877 760 KLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQ 797 (801)
Q Consensus 760 ~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~ 797 (801)
+|+.|++.+|++|+.+|. .+..++.|+.|+++++.
T Consensus 870 ~L~~L~L~~C~~L~~l~~---~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 870 NLSFLDMNGCNNLQRVSL---NISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCEEECCCCCCcCccCc---ccccccCCCeeecCCCc
Confidence 999999999999999988 45667888888888775
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=2.6e-29 Score=311.90 Aligned_cols=354 Identities=18% Similarity=0.152 Sum_probs=209.6
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
+..+..+++|++|+|++|.+.+..|..+.++++|++|.+.+|.+....|..|.++++|++|+|++|.+++
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~---------- 226 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG---------- 226 (968)
T ss_pred ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC----------
Confidence 3456667777777777777777777777777777777777777766666677777777777777776642
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccC
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLS 575 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~ 575 (801)
.+|..++++++|++|+|++|.+.+.+|..++++++|++|+|++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.
T Consensus 227 -~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 227 -EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred -cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 3466677777777777777766667777777777777777777776677777777777777777777777777777777
Q ss_pred CCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCC
Q 045877 576 LLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKST 655 (801)
Q Consensus 576 ~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 655 (801)
++++|+.|+ +++|. + ....+..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|.+.+..+.
T Consensus 306 ~l~~L~~L~---l~~n~-----~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~--p~~l~~~~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 306 QLQNLEILH---LFSNN-----F-TGKIPVALTSLPRLQVLQLWSNKFSGEI--PKNLGKHNNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred CCCCCcEEE---CCCCc-----c-CCcCChhHhcCCCCCEEECcCCCCcCcC--ChHHhCCCCCcEEECCCCeeEeeCCh
Confidence 777777776 55555 1 1234556677777777777777766554 56667777777777777776654433
Q ss_pred CCCCCCCccchhchhhhhcccccccccccc---cCCCccEEEccCCCCC-CCCcccCCCCCCCccEEEeeCCcCCCCCCC
Q 045877 656 KPEPQTGRKDNFFIKTLTKFRTRVTERSQH---VESKLEKLDFQCFPDE-KLPSWVHPYSFKNLKNLYIRGGRLNSLEGS 731 (801)
Q Consensus 656 ~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~---~~~~L~~L~L~~n~~~-~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~ 731 (801)
.+. ....++.|....+.+....+. -.++|+.|+|++|.+. .+|..+. .+++|+.|+|++|.+++..+.
T Consensus 375 ~~~------~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~~~ 446 (968)
T PLN00113 375 GLC------SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT--KLPLVYFLDISNNNLQGRINS 446 (968)
T ss_pred hHh------CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh--cCCCCCEEECcCCcccCccCh
Confidence 221 011222233322222211110 0135555555555433 2344433 455555555555554444332
Q ss_pred ---cccccceecc---------------ccccccccccccccCc-------CCCCceeeccC-------------CCCCc
Q 045877 732 ---EWETVKVLRL---------------KYLNELKIDWKGLQEL-------FPKLEYLEKFK-------------CHKVT 773 (801)
Q Consensus 732 ---~f~~L~~l~L---------------~~L~~L~l~~n~l~~~-------~p~L~~L~l~~-------------c~~L~ 773 (801)
.+++|+.+++ .+|+.|+++.|.+.+. +++|+.|++++ |++|+
T Consensus 447 ~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 526 (968)
T PLN00113 447 RKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLV 526 (968)
T ss_pred hhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCC
Confidence 2233333322 2355555666555422 33455554443 23344
Q ss_pred ccCCCCC--------cccccCCcceEeCCCcccc
Q 045877 774 LCPCDGY--------GIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 774 ~lp~~~n--------~i~~~~~L~~LdlS~~~~~ 799 (801)
.+.+..| .+..+++|+.|||++|++.
T Consensus 527 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 560 (968)
T PLN00113 527 SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560 (968)
T ss_pred EEECCCCcccccCChhHhCcccCCEEECCCCccc
Confidence 4444443 3345677777777777764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=6.8e-29 Score=308.17 Aligned_cols=347 Identities=18% Similarity=0.169 Sum_probs=234.7
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
+..+.++++|++|+|++|++.+..|..+..+++|++|.+.+|.+.+..+..|.++++|++|+|++|.+++
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~---------- 298 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG---------- 298 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc----------
Confidence 3445556666666666666665556556666666666666665555555555566666666666665532
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccC
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLS 575 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~ 575 (801)
.+|..+.++++|++|++++|.+.+.+|..++.+++|++|+|++|.+.+.+|..++.+.+|+.|++++|.+.+.+|..+.
T Consensus 299 -~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 377 (968)
T PLN00113 299 -EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377 (968)
T ss_pred -CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh
Confidence 3455666666777777776666666666666777777777777666666666666777777777777776666666666
Q ss_pred CCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCC
Q 045877 576 LLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKST 655 (801)
Q Consensus 576 ~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 655 (801)
.+.+|+.|+ +++|. + ....+..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|.+.+..+.
T Consensus 378 ~~~~L~~L~---l~~n~-----l-~~~~p~~~~~~~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~~~ 446 (968)
T PLN00113 378 SSGNLFKLI---LFSNS-----L-EGEIPKSLGACRSLRRVRLQDNSFSGEL--PSEFTKLPLVYFLDISNNNLQGRINS 446 (968)
T ss_pred CcCCCCEEE---CcCCE-----e-cccCCHHHhCCCCCCEEECcCCEeeeEC--ChhHhcCCCCCEEECcCCcccCccCh
Confidence 666666666 55554 1 1234566777888888888888877665 67788888888888888888775543
Q ss_pred CCCCCCCccchhchhhhhccccccccccccc--CCCccEEEccCCCCC-CCCcccCCCCCCCccEEEeeCCcCCCCCCCc
Q 045877 656 KPEPQTGRKDNFFIKTLTKFRTRVTERSQHV--ESKLEKLDFQCFPDE-KLPSWVHPYSFKNLKNLYIRGGRLNSLEGSE 732 (801)
Q Consensus 656 ~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~--~~~L~~L~L~~n~~~-~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~ 732 (801)
.+ .....++.|+...+.+....+.. ..+|+.|+|++|.+. .+|.++. .+++|+.|+|++|.+.+..+..
T Consensus 447 ~~------~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~ 518 (968)
T PLN00113 447 RK------WDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLG--SLSELMQLKLSENKLSGEIPDE 518 (968)
T ss_pred hh------ccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhh--hhhccCEEECcCCcceeeCChH
Confidence 22 11234555555555443222211 257999999988775 5677766 8999999999999998887766
Q ss_pred ccccceeccccccccccccccccC-------cCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCccccC
Q 045877 733 WETVKVLRLKYLNELKIDWKGLQE-------LFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHRA 800 (801)
Q Consensus 733 f~~L~~l~L~~L~~L~l~~n~l~~-------~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~~ 800 (801)
+ ..+.+|+.|++++|.+++ .+++|+.|++++|.-...+|. .+.+++.|+.||+++|++..
T Consensus 519 ~-----~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 519 L-----SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK---NLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred H-----cCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh---hHhcCcccCEEeccCCccee
Confidence 6 456778889999998874 456788888888754445554 66788999999999998763
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=4.1e-28 Score=257.67 Aligned_cols=325 Identities=17% Similarity=0.122 Sum_probs=225.9
Q ss_pred hhhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCccccc
Q 045877 415 KAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIE 494 (801)
Q Consensus 415 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 494 (801)
....|.++.+|+.+.|.+|.++.++ ..-....+++.|++.+|.|+.+....++.++.||+||||.|.++....
T Consensus 94 d~~~f~nl~nLq~v~l~~N~Lt~IP-~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~------ 166 (873)
T KOG4194|consen 94 DFEFFYNLPNLQEVNLNKNELTRIP-RFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPK------ 166 (873)
T ss_pred cHHHHhcCCcceeeeeccchhhhcc-cccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccC------
Confidence 3455667777777777777776543 333344557777777777777777777777777777777776643321
Q ss_pred chhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCccc
Q 045877 495 STDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKL 574 (801)
Q Consensus 495 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~ 574 (801)
.+|..-.+|++|+|++|.+...--..|.+|.+|.+|.|+.|.+...-+..|.+|++|+.|+|..|++.-.---.|
T Consensus 167 -----~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltF 241 (873)
T KOG4194|consen 167 -----PSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTF 241 (873)
T ss_pred -----CCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhh
Confidence 123344567777777765544444567777777777777775555445566667777777777776542223346
Q ss_pred CCCCcccccccccccCCcchhhhhhcccCc-ccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCC
Q 045877 575 SLLSKLQVLKGFVISDHAEDDRRWKRWCSL-KDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANK 653 (801)
Q Consensus 575 ~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~-~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 653 (801)
..|.+|+.|. +..|. +...- ..|..|.++++|+|..|++.... ..++.+++.|+.|+|++|.+....
T Consensus 242 qgL~Sl~nlk---lqrN~-------I~kL~DG~Fy~l~kme~l~L~~N~l~~vn--~g~lfgLt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 242 QGLPSLQNLK---LQRND-------ISKLDDGAFYGLEKMEHLNLETNRLQAVN--EGWLFGLTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred cCchhhhhhh---hhhcC-------cccccCcceeeecccceeecccchhhhhh--cccccccchhhhhccchhhhheee
Confidence 6777777766 55555 22222 35666777777777777766555 566777777777777777766544
Q ss_pred CCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcc
Q 045877 654 STKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEW 733 (801)
Q Consensus 654 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f 733 (801)
.. +| .+.++|+.|+|++|.++++++.-+ ..|..|++|.|++|.++.+....|
T Consensus 310 ~d-------------------------~W--sftqkL~~LdLs~N~i~~l~~~sf-~~L~~Le~LnLs~Nsi~~l~e~af 361 (873)
T KOG4194|consen 310 ID-------------------------SW--SFTQKLKELDLSSNRITRLDEGSF-RVLSQLEELNLSHNSIDHLAEGAF 361 (873)
T ss_pred cc-------------------------hh--hhcccceeEeccccccccCChhHH-HHHHHhhhhcccccchHHHHhhHH
Confidence 32 23 335899999999999999987654 578999999999999999988888
Q ss_pred cccceecccccccccccccccc----------CcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 734 ETVKVLRLKYLNELKIDWKGLQ----------ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 734 ~~L~~l~L~~L~~L~l~~n~l~----------~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
-.+++|+.|+|+.|.++ ..+|+|+.|.+.+. +|+.++- ..+..+++|+.|||.+|-+.
T Consensus 362 -----~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~k--rAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 362 -----VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPK--RAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred -----HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecch--hhhccCcccceecCCCCcce
Confidence 67889999999999887 23788888888874 7887775 47788999999999999765
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=9.7e-27 Score=248.20 Aligned_cols=331 Identities=20% Similarity=0.222 Sum_probs=243.7
Q ss_pred hhchhcccCCC-cchhhhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCC-CChhhhccCCCCCEEEc
Q 045877 401 ESMALFNFGEK-PEQKAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPE-FKYDWFSKLEKIKVLYL 478 (801)
Q Consensus 401 ~~~~~~~~~~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~f~~l~~L~~L~L 478 (801)
.+..++.+... -+..+.+++.+.+|.+|.+++|++..+..+ +..+++|+.+....|++.. -+|..+..+..|.+|||
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDL 110 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDL 110 (1255)
T ss_pred hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhccccccCCCCchhcccccceeeec
Confidence 34445555433 245788999999999999999999876544 4578999999999888743 23455568999999999
Q ss_pred CCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchh-hcCCCCCCEEeccCCCCCCCCcccccCCCCCC
Q 045877 479 GRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSE-ISYLTSLEILDLRACYNLDKLPDEIGKLKSLT 557 (801)
Q Consensus 479 s~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~ 557 (801)
|+|++ .+.|..+...+++-+|+|++| .+..+|.. +-+|+.|-+|||++| .+..+|..+..|..|+
T Consensus 111 ShNqL------------~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 111 SHNQL------------REVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred chhhh------------hhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhh
Confidence 99999 577999999999999999997 67788855 568999999999998 6778899999999999
Q ss_pred EEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhccc
Q 045877 558 HLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFK 637 (801)
Q Consensus 558 ~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~ 637 (801)
.|+|++|.+...--..+..+++|++|+ +++.+ -+...+|.++..|.+|+.+|++.|.+... +..+.++.
T Consensus 177 tL~Ls~NPL~hfQLrQLPsmtsL~vLh---ms~Tq-----RTl~N~Ptsld~l~NL~dvDlS~N~Lp~v---Pecly~l~ 245 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLPSMTSLSVLH---MSNTQ-----RTLDNIPTSLDDLHNLRDVDLSENNLPIV---PECLYKLR 245 (1255)
T ss_pred hhhcCCChhhHHHHhcCccchhhhhhh---ccccc-----chhhcCCCchhhhhhhhhccccccCCCcc---hHHHhhhh
Confidence 999999987543333455677777777 66655 33456788999999999999999988755 78999999
Q ss_pred CCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccE
Q 045877 638 RLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKN 717 (801)
Q Consensus 638 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~ 717 (801)
+|+.|+|++|.++..... . ....+|+.|+|+.|.++.+|+.+. .|+.|++
T Consensus 246 ~LrrLNLS~N~iteL~~~---------------------------~-~~W~~lEtLNlSrNQLt~LP~avc--KL~kL~k 295 (1255)
T KOG0444|consen 246 NLRRLNLSGNKITELNMT---------------------------E-GEWENLETLNLSRNQLTVLPDAVC--KLTKLTK 295 (1255)
T ss_pred hhheeccCcCceeeeecc---------------------------H-HHHhhhhhhccccchhccchHHHh--hhHHHHH
Confidence 999999999998754211 0 112578888888888888888887 8888888
Q ss_pred EEeeCCc--CCCCCCCcccccceecccccccccccccccc------CcCCCCceeeccCCCCCcccCCCCCcccccCCcc
Q 045877 718 LYIRGGR--LNSLEGSEWETVKVLRLKYLNELKIDWKGLQ------ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLI 789 (801)
Q Consensus 718 L~L~~n~--l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~------~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~ 789 (801)
|++.+|+ +.|++.+ . ..|..|+.+...+|.+. ..++.|+.|.+ +|..|.+||. .|--++.|.
T Consensus 296 Ly~n~NkL~FeGiPSG-I-----GKL~~Levf~aanN~LElVPEglcRC~kL~kL~L-~~NrLiTLPe---aIHlL~~l~ 365 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSG-I-----GKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKL-DHNRLITLPE---AIHLLPDLK 365 (1255)
T ss_pred HHhccCcccccCCccc-h-----hhhhhhHHHHhhccccccCchhhhhhHHHHHhcc-cccceeechh---hhhhcCCcc
Confidence 8888887 4455432 2 34555566666666554 22334444444 2334444443 444556666
Q ss_pred eEeCCCcc
Q 045877 790 NLNNSKQQ 797 (801)
Q Consensus 790 ~LdlS~~~ 797 (801)
+||+-.|.
T Consensus 366 vLDlreNp 373 (1255)
T KOG0444|consen 366 VLDLRENP 373 (1255)
T ss_pred eeeccCCc
Confidence 66666654
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.5e-25 Score=238.24 Aligned_cols=312 Identities=15% Similarity=0.119 Sum_probs=226.5
Q ss_pred ccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCC
Q 045877 426 FNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNM 505 (801)
Q Consensus 426 ~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l 505 (801)
+.||+++|.|+.+.+..|.++++|..+.+..|.+..++ .+-....+|+.|+|.+|.|+... .+.+..+
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP-~f~~~sghl~~L~L~~N~I~sv~-----------se~L~~l 148 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIP-RFGHESGHLEKLDLRHNLISSVT-----------SEELSAL 148 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcc-cccccccceeEEeeecccccccc-----------HHHHHhH
Confidence 45888888888888888888888888888888777653 23334455888888888775432 4556777
Q ss_pred cCCceEeecCCCCCccCc-hhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccc
Q 045877 506 KELRLLSLQGMSGIQELP-SEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLK 584 (801)
Q Consensus 506 ~~L~~L~Ls~n~~~~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~ 584 (801)
+.||.|||+.| ++..+| .+|..=.++++|+|++|.+...--..|..|.+|..|.|++|+++..-+..|.+|+.|+.|+
T Consensus 149 ~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 149 PALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred hhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence 78888888886 556665 4566667788888888866665566777888888888888887766666777788888887
Q ss_pred cccccCCcchhhhhhcccC-cccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCc
Q 045877 585 GFVISDHAEDDRRWKRWCS-LKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGR 663 (801)
Q Consensus 585 ~~~l~~n~~~~~~~~~~~~-~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 663 (801)
+..|. +... -..|..|++|+.|.|..|.+.... ...|..|.++++|+|..|++.....
T Consensus 228 ---LnrN~-------irive~ltFqgL~Sl~nlklqrN~I~kL~--DG~Fy~l~kme~l~L~~N~l~~vn~--------- 286 (873)
T KOG4194|consen 228 ---LNRNR-------IRIVEGLTFQGLPSLQNLKLQRNDISKLD--DGAFYGLEKMEHLNLETNRLQAVNE--------- 286 (873)
T ss_pred ---ccccc-------eeeehhhhhcCchhhhhhhhhhcCccccc--Ccceeeecccceeecccchhhhhhc---------
Confidence 77776 2111 235778888888888888877666 5677888888888888888775432
Q ss_pred cchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccc
Q 045877 664 KDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKY 743 (801)
Q Consensus 664 ~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~ 743 (801)
++...+ +.|+.|+|++|.+.++...-. ..+++|+.|+|+.|+|+.++++.| -.|+.
T Consensus 287 -----------------g~lfgL-t~L~~L~lS~NaI~rih~d~W-sftqkL~~LdLs~N~i~~l~~~sf-----~~L~~ 342 (873)
T KOG4194|consen 287 -----------------GWLFGL-TSLEQLDLSYNAIQRIHIDSW-SFTQKLKELDLSSNRITRLDEGSF-----RVLSQ 342 (873)
T ss_pred -----------------cccccc-chhhhhccchhhhheeecchh-hhcccceeEeccccccccCChhHH-----HHHHH
Confidence 222332 789999999998877643222 358999999999999999999888 57888
Q ss_pred ccccccccccccCcCCCCceeeccCCCCCcccCCCCC-----------cccccCCcceEeCCCcccc
Q 045877 744 LNELKIDWKGLQELFPKLEYLEKFKCHKVTLCPCDGY-----------GIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 744 L~~L~l~~n~l~~~~p~L~~L~l~~c~~L~~lp~~~n-----------~i~~~~~L~~LdlS~~~~~ 799 (801)
|+.|.|+.|.+. .|.+-.+.+..+|..|.+..| .+..++.|..|++.+||++
T Consensus 343 Le~LnLs~Nsi~----~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 343 LEELNLSHNSID----HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred hhhhcccccchH----HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee
Confidence 999999999886 222222333334444444444 4457999999999999987
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=2e-23 Score=223.05 Aligned_cols=330 Identities=18% Similarity=0.180 Sum_probs=150.9
Q ss_pred cccccccchhhc-chhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhc
Q 045877 425 LFNFSLSLEEIE-NKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLK 503 (801)
Q Consensus 425 L~~L~Ls~N~l~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~ 503 (801)
.+-.|++.|.|+ +..|.....+++++.|-+....+..+ |..++.|.+|+.|.+++|+++ .+-..+.
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~v-PeEL~~lqkLEHLs~~HN~L~------------~vhGELs 75 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQV-PEELSRLQKLEHLSMAHNQLI------------SVHGELS 75 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhC-hHHHHHHhhhhhhhhhhhhhH------------hhhhhhc
Confidence 444455555555 33444444445555544444433332 334455555555555555542 2333444
Q ss_pred CCcCCceEeecCCCCC-ccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccc
Q 045877 504 NMKELRLLSLQGMSGI-QELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582 (801)
Q Consensus 504 ~l~~L~~L~Ls~n~~~-~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~ 582 (801)
.|+.||.+.++.|++- .-+|..|..|..|.+|||++| .+.+.|..+..-+++-+|+||+|+|.++-..-|-+|+.|-.
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF 154 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence 4555555555544331 224444555555555555554 23344554544555555555555443221122344444444
Q ss_pred cccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCC-CCCCCCCCC
Q 045877 583 LKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSAN-KSTKPEPQT 661 (801)
Q Consensus 583 L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~ 661 (801)
|+ +++|. ....|+.+..|.+|++|+|++|.+.-.. ...+..+++|+.|.+++.+-+-. .|...
T Consensus 155 LD---LS~Nr-------Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQ--LrQLPsmtsL~vLhms~TqRTl~N~Ptsl---- 218 (1255)
T KOG0444|consen 155 LD---LSNNR-------LEMLPPQIRRLSMLQTLKLSNNPLNHFQ--LRQLPSMTSLSVLHMSNTQRTLDNIPTSL---- 218 (1255)
T ss_pred hc---cccch-------hhhcCHHHHHHhhhhhhhcCCChhhHHH--HhcCccchhhhhhhcccccchhhcCCCch----
Confidence 44 45554 3344444555555555555555443222 22333334444444443321100 00000
Q ss_pred Cccchhchhhhhccccccc---ccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccce
Q 045877 662 GRKDNFFIKTLTKFRTRVT---ERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKV 738 (801)
Q Consensus 662 ~~~~~~~l~~L~~~~~~l~---~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~ 738 (801)
-...++..+++..|.++ .....+ .+|+.|+|++|.++.+..... .-.+|+.|+|+.|+++.++...+
T Consensus 219 --d~l~NL~dvDlS~N~Lp~vPecly~l-~~LrrLNLS~N~iteL~~~~~--~W~~lEtLNlSrNQLt~LP~avc----- 288 (1255)
T KOG0444|consen 219 --DDLHNLRDVDLSENNLPIVPECLYKL-RNLRRLNLSGNKITELNMTEG--EWENLETLNLSRNQLTVLPDAVC----- 288 (1255)
T ss_pred --hhhhhhhhccccccCCCcchHHHhhh-hhhheeccCcCceeeeeccHH--HHhhhhhhccccchhccchHHHh-----
Confidence 00001111111111111 111111 456666666666655544333 44556666666666666554333
Q ss_pred ecccccccccccccccc--------CcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 739 LRLKYLNELKIDWKGLQ--------ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 739 l~L~~L~~L~l~~n~l~--------~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
.|+.|..|.+..|.+. |.+-+|+.+...+ .+|..+|. .+..+..|+.|.|++|++.
T Consensus 289 -KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPE---glcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 289 -KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPE---GLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred -hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCch---hhhhhHHHHHhccccccee
Confidence 4566666666666665 2222233333322 24444444 6778888888888888764
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=1.7e-23 Score=213.88 Aligned_cols=344 Identities=19% Similarity=0.169 Sum_probs=205.4
Q ss_pred hhhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCccccc
Q 045877 415 KAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIE 494 (801)
Q Consensus 415 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 494 (801)
...+++.+-.|..++..+|+|+..+++.+ .+.++..+++.+|++..+++.... |+.|+.||...|-+
T Consensus 129 l~~~i~~~~~l~dl~~~~N~i~slp~~~~-~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L----------- 195 (565)
T KOG0472|consen 129 LPDSIGRLLDLEDLDATNNQISSLPEDMV-NLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLL----------- 195 (565)
T ss_pred cCchHHHHhhhhhhhccccccccCchHHH-HHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhh-----------
Confidence 34566777777777777777776554443 456666677777777777776666 77777777777766
Q ss_pred chhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCccccc-CCCCCCEEcccCCccccCCCcc
Q 045877 495 STDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIG-KLKSLTHLDISECFLLDGIPKK 573 (801)
Q Consensus 495 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~-~L~~L~~L~Ls~n~l~~~~p~~ 573 (801)
..+|..++.+.+|..|+|.+| .+..+| +|.++..|..|+++.| .+..+|.+.+ +|.+|..|||..|++. .+|++
T Consensus 196 -~tlP~~lg~l~~L~~LyL~~N-ki~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde 270 (565)
T KOG0472|consen 196 -ETLPPELGGLESLELLYLRRN-KIRFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDE 270 (565)
T ss_pred -hcCChhhcchhhhHHHHhhhc-ccccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccccccc-cCchH
Confidence 355666777777777777775 455566 4666666666666665 4455565554 5666666666666643 56666
Q ss_pred cCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeeccccccccc-------------------------
Q 045877 574 LSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTE------------------------- 628 (801)
Q Consensus 574 ~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~------------------------- 628 (801)
+.-+++|++|+ +++|. +...|.++++| .|+.|-+.+|.+.....
T Consensus 271 ~clLrsL~rLD---lSNN~-------is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~ 339 (565)
T KOG0472|consen 271 ICLLRSLERLD---LSNND-------ISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQ 339 (565)
T ss_pred HHHhhhhhhhc---ccCCc-------cccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCC
Confidence 66666666666 66666 55566666666 66666666665421100
Q ss_pred --------------ChhhhhcccCCcEEEeeccCCCCCCCCCCCCC---------CCcc-------chhchh---hhhcc
Q 045877 629 --------------NLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQ---------TGRK-------DNFFIK---TLTKF 675 (801)
Q Consensus 629 --------------~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~---------~~~~-------~~~~l~---~L~~~ 675 (801)
.......+.+.+.|+++.-+++.+..+.|.+. +... ....+. ..-.+
T Consensus 340 se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~l 419 (565)
T KOG0472|consen 340 SEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVL 419 (565)
T ss_pred CcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHh
Confidence 00112223344455555444443332222100 0000 000011 11112
Q ss_pred cccccccccc---cCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceeccccccccccccc
Q 045877 676 RTRVTERSQH---VESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWK 752 (801)
Q Consensus 676 ~~~l~~~~~~---~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n 752 (801)
++..-++.+. ..++|..|+|++|.+-.+|..++ .+..|+.|+|+.|+|..++.-.. .+..++.+-.+.|
T Consensus 420 snn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~--~lv~Lq~LnlS~NrFr~lP~~~y------~lq~lEtllas~n 491 (565)
T KOG0472|consen 420 SNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMG--SLVRLQTLNLSFNRFRMLPECLY------ELQTLETLLASNN 491 (565)
T ss_pred hcCccccchHHHHhhhcceeeecccchhhhcchhhh--hhhhhheecccccccccchHHHh------hHHHHHHHHhccc
Confidence 2222222211 12577888888888888888877 77778888888887776654211 3344455554556
Q ss_pred ccc-------CcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 753 GLQ-------ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 753 ~l~-------~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
++. +.+.+|..|++.+. .+..+|. .+++|++|..|++++|.+|
T Consensus 492 qi~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp---~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 492 QIGSVDPSGLKNMRNLTTLDLQNN-DLQQIPP---ILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccccChHHhhhhhhcceeccCCC-chhhCCh---hhccccceeEEEecCCccC
Confidence 664 34556666666553 5666666 7889999999999999998
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=4.4e-21 Score=215.08 Aligned_cols=344 Identities=19% Similarity=0.175 Sum_probs=214.4
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
..++.|+++.|-+-..+-+...+.-+|+.|++++|++..+ |..+..+.+|+.|+++.|-+ ..+|.+.
T Consensus 21 ~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~f-p~~it~l~~L~~ln~s~n~i------------~~vp~s~ 87 (1081)
T KOG0618|consen 21 EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSF-PIQITLLSHLRQLNLSRNYI------------RSVPSSC 87 (1081)
T ss_pred HHHHhhhccccccccCchHHhhheeeeEEeeccccccccC-CchhhhHHHHhhcccchhhH------------hhCchhh
Confidence 3477788888876554433334455588899988888765 44567788899999999987 4678888
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCC-------------------CEEcccC
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSL-------------------THLDISE 563 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L-------------------~~L~Ls~ 563 (801)
.++.+|++|+|.+| ....+|.++..+.+|++|++++|.+ +.+|..+..++.+ +++++..
T Consensus 88 ~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~ 165 (1081)
T KOG0618|consen 88 SNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRL 165 (1081)
T ss_pred hhhhcchhheeccc-hhhcCchhHHhhhcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhh
Confidence 99999999999986 7788999999999999999999854 4445333222222 2222222
Q ss_pred CccccCCCcccC-------------------CCCcccccc---------------------------------------c
Q 045877 564 CFLLDGIPKKLS-------------------LLSKLQVLK---------------------------------------G 585 (801)
Q Consensus 564 n~l~~~~p~~~~-------------------~L~~L~~L~---------------------------------------~ 585 (801)
|.+.+.++..+. ++.+|+.|. .
T Consensus 166 n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~ 245 (1081)
T KOG0618|consen 166 NVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQY 245 (1081)
T ss_pred hhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecccccccccee
Confidence 222222222111 111122111 0
Q ss_pred ccccCCcchhhhhhcccCcccccCCccCCeeEeeccccccccc--------------------ChhhhhcccCCcEEEee
Q 045877 586 FVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTE--------------------NLSTVLAFKRLLQLKVS 645 (801)
Q Consensus 586 ~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~--------------------~~~~l~~l~~L~~L~L~ 645 (801)
+.++.|. ....|.+++.+.+|+.|++.+|++..... .+..+.++++|++|+|.
T Consensus 246 ~dis~n~-------l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 246 LDISHNN-------LSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred eecchhh-------hhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence 0033333 44456778888889999888888743220 02345567788999999
Q ss_pred ccCCCCCCCCCC-------------------CCCCCccchhchhhhhcccccccccccc---cCCCccEEEccCCCCCCC
Q 045877 646 WGGGSANKSTKP-------------------EPQTGRKDNFFIKTLTKFRTRVTERSQH---VESKLEKLDFQCFPDEKL 703 (801)
Q Consensus 646 ~n~l~~~~~~~~-------------------~~~~~~~~~~~l~~L~~~~~~l~~~~~~---~~~~L~~L~L~~n~~~~l 703 (801)
.|++.......+ .+..+......++.|...+|.+...... -..+|+.|+|++|++..+
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 888875433111 0111222223344444444444322211 126899999999999889
Q ss_pred CcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccccc-----CcCCCCceeeccCCCCCcccCCC
Q 045877 704 PSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ-----ELFPKLEYLEKFKCHKVTLCPCD 778 (801)
Q Consensus 704 p~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~-----~~~p~L~~L~l~~c~~L~~lp~~ 778 (801)
|+... .+++.|+.|+|++|+|+.++... ..+..|+.|....|.+. ..+|.|+.+++ .|.+|+.+-+.
T Consensus 399 pas~~-~kle~LeeL~LSGNkL~~Lp~tv------a~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDl-S~N~L~~~~l~ 470 (1081)
T KOG0618|consen 399 PASKL-RKLEELEELNLSGNKLTTLPDTV------ANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDL-SCNNLSEVTLP 470 (1081)
T ss_pred CHHHH-hchHHhHHHhcccchhhhhhHHH------HhhhhhHHHhhcCCceeechhhhhcCcceEEec-ccchhhhhhhh
Confidence 98765 68899999999999998887522 35666777776777665 33455566666 34556554443
Q ss_pred CCcccccCCcceEeCCCccc
Q 045877 779 GYGIWEKSDLINLNNSKQQH 798 (801)
Q Consensus 779 ~n~i~~~~~L~~LdlS~~~~ 798 (801)
...=| ++|++||||+|..
T Consensus 471 ~~~p~--p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 471 EALPS--PNLKYLDLSGNTR 488 (1081)
T ss_pred hhCCC--cccceeeccCCcc
Confidence 22222 7888888888863
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=2.5e-21 Score=198.16 Aligned_cols=344 Identities=19% Similarity=0.167 Sum_probs=212.0
Q ss_pred hhhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCccccc
Q 045877 415 KAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIE 494 (801)
Q Consensus 415 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 494 (801)
.+.+++.+..++.++.++|+++.++++ .+.+.+++.++.++|.+..+++ .++.+..|..|+..+|++
T Consensus 83 lp~aig~l~~l~~l~vs~n~ls~lp~~-i~s~~~l~~l~~s~n~~~el~~-~i~~~~~l~dl~~~~N~i----------- 149 (565)
T KOG0472|consen 83 LPAAIGELEALKSLNVSHNKLSELPEQ-IGSLISLVKLDCSSNELKELPD-SIGRLLDLEDLDATNNQI----------- 149 (565)
T ss_pred CCHHHHHHHHHHHhhcccchHhhccHH-HhhhhhhhhhhccccceeecCc-hHHHHhhhhhhhcccccc-----------
Confidence 455667777777777777777665443 3456667777777777766543 345566677777777776
Q ss_pred chhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCccc
Q 045877 495 STDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKL 574 (801)
Q Consensus 495 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~ 574 (801)
..+|+.+.++.+|..|++.+|. +..+|+..-+++.|+.||...| .++.+|..++.|.+|..|+|..|++. .+| .|
T Consensus 150 -~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef 224 (565)
T KOG0472|consen 150 -SSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIR-FLP-EF 224 (565)
T ss_pred -ccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccc-cCC-CC
Confidence 3567777777777777777764 3444444444777777777776 67777777888888888888887754 555 67
Q ss_pred CCCCcccccccccccCCcchhhhhhcccCcccc-cCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCC
Q 045877 575 SLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDL-EKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANK 653 (801)
Q Consensus 575 ~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l-~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 653 (801)
..+..|.+|+ ++.|. +...+.+. +++.+|..||+..|++... |..+.-+++|.+||+++|.+++..
T Consensus 225 ~gcs~L~Elh---~g~N~-------i~~lpae~~~~L~~l~vLDLRdNklke~---Pde~clLrsL~rLDlSNN~is~Lp 291 (565)
T KOG0472|consen 225 PGCSLLKELH---VGENQ-------IEMLPAEHLKHLNSLLVLDLRDNKLKEV---PDEICLLRSLERLDLSNNDISSLP 291 (565)
T ss_pred CccHHHHHHH---hcccH-------HHhhHHHHhcccccceeeeccccccccC---chHHHHhhhhhhhcccCCccccCC
Confidence 7777777777 77776 44455443 3777777777777777655 566677777777777777777654
Q ss_pred CCCCCCCC------C------------ccchhchhhhhc------cccc--cccc-----ccccC-----CCccEEEccC
Q 045877 654 STKPEPQT------G------------RKDNFFIKTLTK------FRTR--VTER-----SQHVE-----SKLEKLDFQC 697 (801)
Q Consensus 654 ~~~~~~~~------~------------~~~~~~l~~L~~------~~~~--l~~~-----~~~~~-----~~L~~L~L~~ 697 (801)
..-..-.+ | .-....+++|.. .+.. -... ...++ .+.+.|++++
T Consensus 292 ~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~ 371 (565)
T KOG0472|consen 292 YSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD 371 (565)
T ss_pred cccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc
Confidence 32110000 0 000111222211 0000 0000 00011 4678888888
Q ss_pred CCCCCCCcccCC-CCCCCccEEEeeCCcCCCCCCCcccccceeccccc-ccccccccccc------CcCCCCceeeccCC
Q 045877 698 FPDEKLPSWVHP-YSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYL-NELKIDWKGLQ------ELFPKLEYLEKFKC 769 (801)
Q Consensus 698 n~~~~lp~~l~~-~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L-~~L~l~~n~l~------~~~p~L~~L~l~~c 769 (801)
-.++.+|+.++. ..-.-....+++.|++..++..-- .+..+ ..+.++.|.++ ..+++|..|++++.
T Consensus 372 ~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~------~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN 445 (565)
T KOG0472|consen 372 KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLV------ELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN 445 (565)
T ss_pred cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhH------HHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc
Confidence 888888887762 111227788999999888875211 12222 23345555554 35566666666653
Q ss_pred CCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 770 HKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 770 ~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
-|..+|. .+..+..|+.||+|.|+||
T Consensus 446 -~Ln~LP~---e~~~lv~Lq~LnlS~NrFr 471 (565)
T KOG0472|consen 446 -LLNDLPE---EMGSLVRLQTLNLSFNRFR 471 (565)
T ss_pred -hhhhcch---hhhhhhhhheecccccccc
Confidence 3566666 5566677888899988876
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=5.9e-18 Score=211.13 Aligned_cols=127 Identities=15% Similarity=0.174 Sum_probs=75.7
Q ss_pred CccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCC
Q 045877 610 LEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESK 689 (801)
Q Consensus 610 L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~ 689 (801)
.++|+.|+|++|...... +..+.++++|+.|+|++|...+..+... ....|+.|+...+......+..+.+
T Consensus 777 ~~sL~~L~Ls~n~~l~~l--P~si~~L~~L~~L~Ls~C~~L~~LP~~~-------~L~sL~~L~Ls~c~~L~~~p~~~~n 847 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVEL--PSSIQNLHKLEHLEIENCINLETLPTGI-------NLESLESLDLSGCSRLRTFPDISTN 847 (1153)
T ss_pred cccchheeCCCCCCcccc--ChhhhCCCCCCEEECCCCCCcCeeCCCC-------CccccCEEECCCCCccccccccccc
Confidence 457888888887655444 6778888999999998875433333211 1223333333332222222333467
Q ss_pred ccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCc-CCCCCC--Ccccccceecccccccc
Q 045877 690 LEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGR-LNSLEG--SEWETVKVLRLKYLNEL 747 (801)
Q Consensus 690 L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~-l~~~~~--~~f~~L~~l~L~~L~~L 747 (801)
|+.|+|++|.+..+|.++. .+++|+.|+|++|+ +..++. ..+++|+.+.+.+|..|
T Consensus 848 L~~L~Ls~n~i~~iP~si~--~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 848 ISDLNLSRTGIEEVPWWIE--KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred cCEeECCCCCCccChHHHh--cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 7788888777777777776 77788888887754 555543 33445555555554444
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.73 E-value=2.1e-19 Score=184.21 Aligned_cols=214 Identities=18% Similarity=0.133 Sum_probs=179.1
Q ss_pred chhhhhhhhccccccccccchhhcchhhhhhccccCceeeecCC-cccCCCChhhhccCCCCCEEEcCCcccCCCCCCcc
Q 045877 413 EQKAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVS-EEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHI 491 (801)
Q Consensus 413 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~ 491 (801)
.--...|..+++|++||||+|+|+.+.|..|.++.++.+|.+.+ |.|..++.+.|.++..|+.|.+.-|++.-
T Consensus 81 ~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~C------ 154 (498)
T KOG4237|consen 81 SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINC------ 154 (498)
T ss_pred cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcc------
Confidence 33467899999999999999999999999999999999998777 99999999999999999999999998842
Q ss_pred cccchhhhHhhcCCcCCceEeecCCCCCccCch-hhcCCCCCCEEeccCCCCCC--------------------------
Q 045877 492 EIESTDYLKGLKNMKELRLLSLQGMSGIQELPS-EISYLTSLEILDLRACYNLD-------------------------- 544 (801)
Q Consensus 492 ~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~-~i~~L~~L~~L~Ls~n~~~~-------------------------- 544 (801)
...+.|..+++|..|.|..| .+..++. +|..+..++++.+..|.+..
T Consensus 155 -----ir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p 228 (498)
T KOG4237|consen 155 -----IRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP 228 (498)
T ss_pred -----hhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence 34678888999999999886 5666665 77788888888777654211
Q ss_pred -----------------------------------CCc-ccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccc
Q 045877 545 -----------------------------------KLP-DEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVI 588 (801)
Q Consensus 545 -----------------------------------~lp-~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l 588 (801)
..| ..|.+|++|+.|+|++|+++..-+.+|..+..++.|. +
T Consensus 229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~---L 305 (498)
T KOG4237|consen 229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY---L 305 (498)
T ss_pred HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh---c
Confidence 011 2367899999999999999998899999999999999 8
Q ss_pred cCCcchhhhhhcccC-cccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCC
Q 045877 589 SDHAEDDRRWKRWCS-LKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGS 650 (801)
Q Consensus 589 ~~n~~~~~~~~~~~~-~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 650 (801)
..|+ +..+ -..|.++..|+.|+|.+|+|+... +.+|..+.+|..|+|-.|.+.
T Consensus 306 ~~N~-------l~~v~~~~f~~ls~L~tL~L~~N~it~~~--~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 306 TRNK-------LEFVSSGMFQGLSGLKTLSLYDNQITTVA--PGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred Ccch-------HHHHHHHhhhccccceeeeecCCeeEEEe--cccccccceeeeeehccCccc
Confidence 8887 2222 257889999999999999999887 888999999999999887665
No 14
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.69 E-value=4.2e-19 Score=189.05 Aligned_cols=159 Identities=15% Similarity=0.276 Sum_probs=112.1
Q ss_pred cchhhcccCCCCCCCcceeecCcchhhHhhhhccceeeCCCCChhH---HHHHHHHhhhcccccccccccchhhhhHHHH
Q 045877 79 WDYVIISNNKGKISSSEQIKKNEEKDASEADQSVQVHPLNQLDHDL---IYMQYALKRLKGFEGTFGKSIQDLKDDLELV 155 (801)
Q Consensus 79 w~~l~~~~~~~~~~s~~~vttr~~~~~~~~~~~~~~~~l~~l~~~~---lf~~~af~~~~~~~~~~~~~~~~~~~~~~~~ 155 (801)
|..+...+.....+++++||||...++..+.....+++|+.|+.+| +|.+.++.... ..
T Consensus 116 ~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~-~~----------------- 177 (287)
T PF00931_consen 116 LEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKES-ES----------------- 177 (287)
T ss_dssp H-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS---------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc-----------------
Confidence 5555555555556899999999999988776447899999999998 88888776551 00
Q ss_pred HhhhccCCccchhhhhhhHHHHHHHHHHHHHhCCCCCcccCCCCC-----chhHHhhhccCCC--CCCCCccccccccch
Q 045877 156 LTSQATGSKSVQEVETLQDEIRRISQKFLNLKSKIPPVNSSSSDD-----SDAQQRRRINQSK--DLPNMADKTRFKEHD 228 (801)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~~l~~-----~~~~~W~~~l~~~--~~~~~~~~~~~~~~~ 228 (801)
++.+.+++++|+++|+|+|||+ +++|+ .+..+|+.+++.. ......+ ....
T Consensus 178 -----------------~~~~~~~~~~i~~~c~glPLal-~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~----~~~~ 235 (287)
T PF00931_consen 178 -----------------PEDLEDLAKEIVEKCGGLPLAL-KLIASYLRSKSTVDEWEEALEELENSLRESRD----YDRS 235 (287)
T ss_dssp ------------------TTSCTHHHHHHHHTTT-HHHH-HHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSG----SCHH
T ss_pred -----------------cccccccccccccccccccccc-cccccccccccccccccccccccccccccccc----cccc
Confidence 1334568999999999999996 33332 3567898877652 1111110 2246
Q ss_pred hHHHHHHhhhccC-CCccccceecccCCCceechhhHHHHHHHcCCCccc
Q 045877 229 FFIEFKKIFQSLG-NDQSCLLCFAVFPENAVIKKRLLVNWWIGEGFLKER 277 (801)
Q Consensus 229 i~~~L~~SYd~L~-~~K~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~ 277 (801)
++.++.+||+.|+ ++|+||+|||+||+++.|+++.||++|+++|||...
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999999 999999999999999999999999999999999875
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.67 E-value=3.7e-16 Score=181.60 Aligned_cols=234 Identities=20% Similarity=0.101 Sum_probs=162.2
Q ss_pred ccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhc
Q 045877 424 KLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLK 503 (801)
Q Consensus 424 ~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~ 503 (801)
.-..|+|+.|.|+.+ |.++. .+|+.|.+..|++..++. .+++|+.|+|++|+++. +|..
T Consensus 202 ~~~~LdLs~~~LtsL-P~~l~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~Lts------------LP~l-- 260 (788)
T PRK15387 202 GNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS------------LPVL-- 260 (788)
T ss_pred CCcEEEcCCCCCCcC-Ccchh--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCc------------ccCc--
Confidence 456789999999865 44543 378889999999888653 35789999999998853 2321
Q ss_pred CCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCccccc
Q 045877 504 NMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583 (801)
Q Consensus 504 ~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L 583 (801)
..+|+.|+|++|. +..+|..+ .+|+.|+|++|++ ..+|.. +++|++|++++|++.+ +|... .+|+.|
T Consensus 261 -p~sL~~L~Ls~N~-L~~Lp~lp---~~L~~L~Ls~N~L-t~LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L 327 (788)
T PRK15387 261 -PPGLLELSIFSNP-LTHLPALP---SGLCKLWIFGNQL-TSLPVL---PPGLQELSVSDNQLAS-LPALP---SELCKL 327 (788)
T ss_pred -ccccceeeccCCc-hhhhhhch---hhcCEEECcCCcc-cccccc---ccccceeECCCCcccc-CCCCc---cccccc
Confidence 3578899999974 45666533 5788899999854 456652 4679999999998764 55432 346666
Q ss_pred ccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCc
Q 045877 584 KGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGR 663 (801)
Q Consensus 584 ~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 663 (801)
+ +++|. ...+|. -..+|+.|+|++|++.... .. ..+|+.|++++|.+.+..
T Consensus 328 ~---Ls~N~-------L~~LP~---lp~~Lq~LdLS~N~Ls~LP---~l---p~~L~~L~Ls~N~L~~LP---------- 378 (788)
T PRK15387 328 W---AYNNQ-------LTSLPT---LPSGLQELSVSDNQLASLP---TL---PSELYKLWAYNNRLTSLP---------- 378 (788)
T ss_pred c---cccCc-------cccccc---cccccceEecCCCccCCCC---CC---CcccceehhhccccccCc----------
Confidence 6 66776 333332 1247888999988887643 11 246777888888776421
Q ss_pred cchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccc
Q 045877 664 KDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKY 743 (801)
Q Consensus 664 ~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~ 743 (801)
..+.+|+.|+|++|.+..+|.. .++|+.|+|++|.|++++. + ..+
T Consensus 379 ---------------------~l~~~L~~LdLs~N~Lt~LP~l-----~s~L~~LdLS~N~LssIP~--l-------~~~ 423 (788)
T PRK15387 379 ---------------------ALPSGLKELIVSGNRLTSLPVL-----PSELKELMVSGNRLTSLPM--L-------PSG 423 (788)
T ss_pred ---------------------ccccccceEEecCCcccCCCCc-----ccCCCEEEccCCcCCCCCc--c-------hhh
Confidence 1235789999999988888754 3578899999999887653 1 234
Q ss_pred cccccccccccc
Q 045877 744 LNELKIDWKGLQ 755 (801)
Q Consensus 744 L~~L~l~~n~l~ 755 (801)
|..|++++|.++
T Consensus 424 L~~L~Ls~NqLt 435 (788)
T PRK15387 424 LLSLSVYRNQLT 435 (788)
T ss_pred hhhhhhccCccc
Confidence 566777777765
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=1e-15 Score=177.88 Aligned_cols=241 Identities=18% Similarity=0.071 Sum_probs=168.2
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
.+|+.|++++|+|+.++. ..++|++|.+.+|.+..++. ..++|+.|+|++|.++ .+|..
T Consensus 222 ~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~N~L~------------~Lp~l- 280 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLT------------HLPAL- 280 (788)
T ss_pred cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccC----cccccceeeccCCchh------------hhhhc-
Confidence 368888999999887543 24788889998888887643 2467888999998873 34432
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~ 582 (801)
..+|+.|+|++|. +..+|. .+++|+.|+|++|++.+ +|... .+|+.|++++|.+. .+|.. ..+|+.
T Consensus 281 --p~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~-~LP~l---p~~Lq~ 346 (788)
T PRK15387 281 --PSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLT-SLPTL---PSGLQE 346 (788)
T ss_pred --hhhcCEEECcCCc-cccccc---cccccceeECCCCcccc-CCCCc---ccccccccccCccc-ccccc---ccccce
Confidence 2568888898874 456665 24678999999886553 55422 35778888888875 35542 246788
Q ss_pred cccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCC
Q 045877 583 LKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTG 662 (801)
Q Consensus 583 L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 662 (801)
|+ +++|. +..+|.. ..+|+.|++++|.+.... . ...+|+.|++++|.+.+..
T Consensus 347 Ld---LS~N~-------Ls~LP~l---p~~L~~L~Ls~N~L~~LP---~---l~~~L~~LdLs~N~Lt~LP--------- 398 (788)
T PRK15387 347 LS---VSDNQ-------LASLPTL---PSELYKLWAYNNRLTSLP---A---LPSGLKELIVSGNRLTSLP--------- 398 (788)
T ss_pred Ee---cCCCc-------cCCCCCC---CcccceehhhccccccCc---c---cccccceEEecCCcccCCC---------
Confidence 88 78887 4444432 346778888888877542 2 1357888999888876432
Q ss_pred ccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceeccc
Q 045877 663 RKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLK 742 (801)
Q Consensus 663 ~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~ 742 (801)
..+++|+.|++++|.+..+|... .+|+.|+|++|+|+.++.. + ..+.
T Consensus 399 ----------------------~l~s~L~~LdLS~N~LssIP~l~-----~~L~~L~Ls~NqLt~LP~s-l-----~~L~ 445 (788)
T PRK15387 399 ----------------------VLPSELKELMVSGNRLTSLPMLP-----SGLLSLSVYRNQLTRLPES-L-----IHLS 445 (788)
T ss_pred ----------------------CcccCCCEEEccCCcCCCCCcch-----hhhhhhhhccCcccccChH-H-----hhcc
Confidence 11367889999999888887642 4678889999998877542 3 3567
Q ss_pred cccccccccccccCcCC
Q 045877 743 YLNELKIDWKGLQELFP 759 (801)
Q Consensus 743 ~L~~L~l~~n~l~~~~p 759 (801)
+|..|++++|.+++..+
T Consensus 446 ~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 446 SETTVNLEGNPLSERTL 462 (788)
T ss_pred CCCeEECCCCCCCchHH
Confidence 78888888888875533
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=2.4e-16 Score=184.40 Aligned_cols=250 Identities=18% Similarity=0.187 Sum_probs=162.7
Q ss_pred ccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhc
Q 045877 424 KLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLK 503 (801)
Q Consensus 424 ~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~ 503 (801)
+.+.|+++++.++.++. .+ ...++.|.+.+|.+..++...+ .+|+.|+|++|.++ .+|..+.
T Consensus 179 ~~~~L~L~~~~LtsLP~-~I--p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~Lt------------sLP~~l~ 240 (754)
T PRK15370 179 NKTELRLKILGLTTIPA-CI--PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLT------------SIPATLP 240 (754)
T ss_pred CceEEEeCCCCcCcCCc-cc--ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccc------------cCChhhh
Confidence 45677888888776543 32 2468888888888887766544 47888888888874 3344332
Q ss_pred CCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCccccc
Q 045877 504 NMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583 (801)
Q Consensus 504 ~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L 583 (801)
.+|+.|+|++|. +..+|..+. .+|+.|+|++|++. .+|..+. .+|++|++++|++. .+|..+. .+|+.|
T Consensus 241 --~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L 309 (754)
T PRK15370 241 --DTIQEMELSINR-ITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHL 309 (754)
T ss_pred --ccccEEECcCCc-cCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHH
Confidence 368888888875 447777664 57888888887554 5676654 47888888888876 4565443 367777
Q ss_pred ccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCc
Q 045877 584 KGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGR 663 (801)
Q Consensus 584 ~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 663 (801)
+ +++|. ...++..+ .++|+.|++++|.+... +..+. ++|+.|++++|.+.....
T Consensus 310 ~---Ls~N~-------Lt~LP~~l--~~sL~~L~Ls~N~Lt~L---P~~l~--~sL~~L~Ls~N~L~~LP~--------- 363 (754)
T PRK15370 310 N---VQSNS-------LTALPETL--PPGLKTLEAGENALTSL---PASLP--PELQVLDVSKNQITVLPE--------- 363 (754)
T ss_pred H---hcCCc-------cccCCccc--cccceeccccCCccccC---Chhhc--CcccEEECCCCCCCcCCh---------
Confidence 7 77776 33344333 25788888888887654 33332 578888888887763211
Q ss_pred cchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccc
Q 045877 664 KDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKY 743 (801)
Q Consensus 664 ~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~ 743 (801)
.++++|+.|+|++|.+..+|..+. ..|+.|++++|+|+.++. .++++. ..++.
T Consensus 364 ---------------------~lp~~L~~LdLs~N~Lt~LP~~l~----~sL~~LdLs~N~L~~LP~-sl~~~~-~~~~~ 416 (754)
T PRK15370 364 ---------------------TLPPTITTLDVSRNALTNLPENLP----AALQIMQASRNNLVRLPE-SLPHFR-GEGPQ 416 (754)
T ss_pred ---------------------hhcCCcCEEECCCCcCCCCCHhHH----HHHHHHhhccCCcccCch-hHHHHh-hcCCC
Confidence 123567777777777777776654 357777777777776543 222221 12345
Q ss_pred cccccccccccc
Q 045877 744 LNELKIDWKGLQ 755 (801)
Q Consensus 744 L~~L~l~~n~l~ 755 (801)
+..|++.+|.++
T Consensus 417 l~~L~L~~Npls 428 (754)
T PRK15370 417 PTRIIVEYNPFS 428 (754)
T ss_pred ccEEEeeCCCcc
Confidence 556666666665
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=2.7e-17 Score=184.97 Aligned_cols=284 Identities=19% Similarity=0.234 Sum_probs=194.9
Q ss_pred hhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccch
Q 045877 417 VEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIEST 496 (801)
Q Consensus 417 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 496 (801)
.++..+..|+.+....|+++...- ..++++.|+...|.+..+.. -..-.+|+.++++.|++ .
T Consensus 193 ~dls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l------------~ 254 (1081)
T KOG0618|consen 193 LDLSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNL------------S 254 (1081)
T ss_pred hhhhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeecc--ccccccceeeecchhhh------------h
Confidence 455667777888888887764432 34577788888887764322 12235789999999988 4
Q ss_pred hhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCccc-C
Q 045877 497 DYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKL-S 575 (801)
Q Consensus 497 ~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~-~ 575 (801)
.+|++++.+.+|+.|+..+|.+ ..+|..+...++|+.|++.+| -+..+|....+++.|++|+|..|++. .+|+.+ .
T Consensus 255 ~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~ 331 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLA 331 (1081)
T ss_pred cchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhcccc-ccchHHHh
Confidence 6788899999999999999754 788888999999999999988 55677888888999999999999864 556533 2
Q ss_pred CCCc-ccccccccccCCcchhhhhhcccCcccc--cCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCC
Q 045877 576 LLSK-LQVLKGFVISDHAEDDRRWKRWCSLKDL--EKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSAN 652 (801)
Q Consensus 576 ~L~~-L~~L~~~~l~~n~~~~~~~~~~~~~~~l--~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 652 (801)
.+.. |..|+ .+.|. ....+ .. ..+..|+.|.+.+|.++... ...+.++.+|+.|+|++|.+...
T Consensus 332 v~~~~l~~ln---~s~n~-------l~~lp-~~~e~~~~~Lq~LylanN~Ltd~c--~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 332 VLNASLNTLN---VSSNK-------LSTLP-SYEENNHAALQELYLANNHLTDSC--FPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred hhhHHHHHHh---hhhcc-------ccccc-cccchhhHHHHHHHHhcCcccccc--hhhhccccceeeeeecccccccC
Confidence 2222 44444 55554 22222 22 23556888888888887776 77888888899999998888754
Q ss_pred CCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCc
Q 045877 653 KSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSE 732 (801)
Q Consensus 653 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~ 732 (801)
....+ . . ...|+.|+|+||.++.+|..+. .++.|++|...+|+|..+|.
T Consensus 399 pas~~------------~--------------k-le~LeeL~LSGNkL~~Lp~tva--~~~~L~tL~ahsN~l~~fPe-- 447 (1081)
T KOG0618|consen 399 PASKL------------R--------------K-LEELEELNLSGNKLTTLPDTVA--NLGRLHTLRAHSNQLLSFPE-- 447 (1081)
T ss_pred CHHHH------------h--------------c-hHHhHHHhcccchhhhhhHHHH--hhhhhHHHhhcCCceeechh--
Confidence 32211 0 1 2467777777777777777766 77777777777777665553
Q ss_pred ccccceecccccccccccccccc-----C--cCCCCceeeccCCC
Q 045877 733 WETVKVLRLKYLNELKIDWKGLQ-----E--LFPKLEYLEKFKCH 770 (801)
Q Consensus 733 f~~L~~l~L~~L~~L~l~~n~l~-----~--~~p~L~~L~l~~c~ 770 (801)
+ ..++.|+.+|++.|.++ . .-|+|++|++++..
T Consensus 448 ~-----~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 448 L-----AQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred h-----hhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 2 35666666777777665 1 12466666666654
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.58 E-value=2.7e-15 Score=175.57 Aligned_cols=228 Identities=18% Similarity=0.194 Sum_probs=173.3
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
+.|+.|+|++|+|+.++...+ .+|++|++.+|.+..++.... ..|+.|+|++|.++ .+|..+
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L~------------~LP~~l 260 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP---DTIQEMELSINRIT------------ELPERL 260 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh---ccccEEECcCCccC------------cCChhH
Confidence 468899999999998765543 489999999999988765433 47999999999984 445555
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~ 582 (801)
. .+|++|+|++|.+ ..+|..+. .+|++|+|++|++. .+|..+. .+|++|++++|.+.. +|..+. ++|+.
T Consensus 261 ~--s~L~~L~Ls~N~L-~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~ 329 (754)
T PRK15370 261 P--SALQSLDLFHNKI-SCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKT 329 (754)
T ss_pred h--CCCCEEECcCCcc-CccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCcccc--cccee
Confidence 3 4899999999854 56887664 58999999999655 5666553 479999999999874 665443 57888
Q ss_pred cccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCC
Q 045877 583 LKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTG 662 (801)
Q Consensus 583 L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 662 (801)
|+ +++|. ...++..+. ++|+.|+|++|++... +..+ .++|+.|+|++|.+.....
T Consensus 330 L~---Ls~N~-------Lt~LP~~l~--~sL~~L~Ls~N~L~~L---P~~l--p~~L~~LdLs~N~Lt~LP~-------- 384 (754)
T PRK15370 330 LE---AGENA-------LTSLPASLP--PELQVLDVSKNQITVL---PETL--PPTITTLDVSRNALTNLPE-------- 384 (754)
T ss_pred cc---ccCCc-------cccCChhhc--CcccEEECCCCCCCcC---Chhh--cCCcCEEECCCCcCCCCCH--------
Confidence 88 88887 445665553 6899999999998754 3333 2689999999998875321
Q ss_pred ccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccC--CCCCCCccEEEeeCCcCC
Q 045877 663 RKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVH--PYSFKNLKNLYIRGGRLN 726 (801)
Q Consensus 663 ~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~--~~~l~~L~~L~L~~n~l~ 726 (801)
.++..|+.|++++|.+..+|..+. ...++++..|+|.+|.|+
T Consensus 385 ----------------------~l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 385 ----------------------NLPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred ----------------------hHHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 123579999999999988887653 125688999999999976
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.52 E-value=3.2e-16 Score=161.02 Aligned_cols=128 Identities=16% Similarity=0.101 Sum_probs=98.5
Q ss_pred cccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCC-cccCCCCCCcccccchhhh-Hhh
Q 045877 425 LFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGR-WQSTVDDIPHIEIESTDYL-KGL 502 (801)
Q Consensus 425 L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~lp-~~l 502 (801)
-+.++|..|+|+.+++..|..+.+|+.|++++|.|..|.+++|.+++.|-.|-+-+ |+|+ .+| ..|
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~------------~l~k~~F 136 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT------------DLPKGAF 136 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh------------hhhhhHh
Confidence 35677888888888888888888888888888888888888888888876665555 7774 333 467
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcc-cccCCCCCCEEcccCCc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPD-EIGKLKSLTHLDISECF 565 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~-~~~~L~~L~~L~Ls~n~ 565 (801)
.+|..|+.|.+.-|++.-...+.|..|++|..|.+..|.+ ..++. .|..+..++++.+..|.
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCc
Confidence 8888888888888765555557788888888888888744 44444 77888888888887776
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=2e-16 Score=144.60 Aligned_cols=157 Identities=22% Similarity=0.278 Sum_probs=125.9
Q ss_pred ccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchh
Q 045877 446 RGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSE 525 (801)
Q Consensus 446 ~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~ 525 (801)
+..+..|.+++|.+..++| -+..+.+|++|++++|++ .++|.++..+++||.|++.-| ....+|..
T Consensus 32 ~s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqi------------e~lp~~issl~klr~lnvgmn-rl~~lprg 97 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQI------------EELPTSISSLPKLRILNVGMN-RLNILPRG 97 (264)
T ss_pred hhhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchh------------hhcChhhhhchhhhheecchh-hhhcCccc
Confidence 3344555566666655543 357788899999999988 577888999999999999876 45678888
Q ss_pred hcCCCCCCEEeccCCCCC-CCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCc
Q 045877 526 ISYLTSLEILDLRACYNL-DKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSL 604 (801)
Q Consensus 526 i~~L~~L~~L~Ls~n~~~-~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~ 604 (801)
|+.++.|++|||.+|++. ..+|..|..|+.|+-|+|+.|.+. .+|..++++++||.|. +..|. ....|
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~---lrdnd-------ll~lp 166 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILS---LRDND-------LLSLP 166 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEe---eccCc-------hhhCc
Confidence 999999999999988765 467888888889999999999864 7888899999999988 77777 66778
Q ss_pred ccccCCccCCeeEeecccccccc
Q 045877 605 KDLEKLEHLRKLTININSEKFQT 627 (801)
Q Consensus 605 ~~l~~L~~L~~L~L~~n~~~~~~ 627 (801)
.+++.++.|+.|.+.+|+++...
T Consensus 167 keig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred HHHHHHHHHHHHhcccceeeecC
Confidence 88999999999999999887664
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.51 E-value=1.8e-15 Score=163.75 Aligned_cols=203 Identities=19% Similarity=0.142 Sum_probs=98.5
Q ss_pred hHhhcCCcCCceEeecCCCCCccCchhhcCCCC---CCEEeccCCCCCC----CCcccccCC-CCCCEEcccCCcccc--
Q 045877 499 LKGLKNMKELRLLSLQGMSGIQELPSEISYLTS---LEILDLRACYNLD----KLPDEIGKL-KSLTHLDISECFLLD-- 568 (801)
Q Consensus 499 p~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~---L~~L~Ls~n~~~~----~lp~~~~~L-~~L~~L~Ls~n~l~~-- 568 (801)
+..+..+++|++|+|++|.+.+..+..+..+.. |++|++++|.+.. .+...+..+ ++|+.|++++|.+++
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 344555556666666665544444444444433 6666666654431 122233444 556666666665542
Q ss_pred --CCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccc--cChhhhhcccCCcEEEe
Q 045877 569 --GIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQT--ENLSTVLAFKRLLQLKV 644 (801)
Q Consensus 569 --~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~--~~~~~l~~l~~L~~L~L 644 (801)
.++..+..+.+|++|+ +++|.... ......+..+..+++|+.|++++|.+.... .....+..+++|++|++
T Consensus 154 ~~~~~~~~~~~~~L~~L~---l~~n~l~~--~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~l 228 (319)
T cd00116 154 CEALAKALRANRDLKELN---LANNGIGD--AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL 228 (319)
T ss_pred HHHHHHHHHhCCCcCEEE---CcCCCCch--HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEec
Confidence 1222344444555555 44443000 000011223444567777777777665332 11234556667777777
Q ss_pred eccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCC-----CCCcccCCCCCCCccEEE
Q 045877 645 SWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDE-----KLPSWVHPYSFKNLKNLY 719 (801)
Q Consensus 645 ~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~-----~lp~~l~~~~l~~L~~L~ 719 (801)
++|.+.+... ..+ ..........|+.|++++|.++ .+...+. .+++|++|+
T Consensus 229 s~n~l~~~~~---------------~~l-------~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~--~~~~L~~l~ 284 (319)
T cd00116 229 GDNNLTDAGA---------------AAL-------ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLA--EKESLLELD 284 (319)
T ss_pred CCCcCchHHH---------------HHH-------HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHh--cCCCccEEE
Confidence 7776553110 000 0000001256777777777553 1222232 556777777
Q ss_pred eeCCcCCCCCC
Q 045877 720 IRGGRLNSLEG 730 (801)
Q Consensus 720 L~~n~l~~~~~ 730 (801)
+++|.++..+.
T Consensus 285 l~~N~l~~~~~ 295 (319)
T cd00116 285 LRGNKFGEEGA 295 (319)
T ss_pred CCCCCCcHHHH
Confidence 77777665543
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=8.7e-16 Score=140.48 Aligned_cols=161 Identities=24% Similarity=0.302 Sum_probs=142.3
Q ss_pred hccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCC
Q 045877 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKL 546 (801)
Q Consensus 467 f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~l 546 (801)
+.++.++..|.||+|+++ .+|..+..+.+|+.|++.+| -++++|.+++.|++|+.|+++-| .+..+
T Consensus 29 Lf~~s~ITrLtLSHNKl~------------~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmn-rl~~l 94 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT------------VVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMN-RLNIL 94 (264)
T ss_pred ccchhhhhhhhcccCcee------------ecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchh-hhhcC
Confidence 356778899999999995 55788999999999999987 67899999999999999999987 56789
Q ss_pred cccccCCCCCCEEcccCCcccc-CCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccc
Q 045877 547 PDEIGKLKSLTHLDISECFLLD-GIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKF 625 (801)
Q Consensus 547 p~~~~~L~~L~~L~Ls~n~l~~-~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~ 625 (801)
|..|+.++-|+.|||++|.+.. .+|..|..++.|+.|+ +++|. ...+|..++++++|+.|.+..|.+..
T Consensus 95 prgfgs~p~levldltynnl~e~~lpgnff~m~tlraly---l~dnd-------fe~lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY---LGDND-------FEILPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred ccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH---hcCCC-------cccCChhhhhhcceeEEeeccCchhh
Confidence 9999999999999999998765 6888899999999999 89998 66789999999999999999998765
Q ss_pred cccChhhhhcccCCcEEEeeccCCCCCCC
Q 045877 626 QTENLSTVLAFKRLLQLKVSWGGGSANKS 654 (801)
Q Consensus 626 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 654 (801)
. +..++.++.|+.|.+.+|.++-..+
T Consensus 165 l---pkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 165 L---PKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred C---cHHHHHHHHHHHHhcccceeeecCh
Confidence 4 7889999999999999999875443
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.42 E-value=4.5e-14 Score=152.76 Aligned_cols=266 Identities=16% Similarity=0.100 Sum_probs=178.5
Q ss_pred hhhhhccccccccccchhhcch----hhhhhccccCceeeecCCcccCC------CChhhhccCCCCCEEEcCCcccCCC
Q 045877 417 VEFEKIKKLFNFSLSLEEIENK----AKDCAMKRGRIETLFNVSEEFPE------FKYDWFSKLEKIKVLYLGRWQSTVD 486 (801)
Q Consensus 417 ~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~~~~L~~L~l~~n~i~~------~~~~~f~~l~~L~~L~Ls~n~l~~~ 486 (801)
.-|..+..|+.++++++.++.. ++..+...+.++.+.+..+.+.. .....|..+++|+.|+|++|.+..
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~- 95 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP- 95 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh-
Confidence 4566777799999999998543 44455566778888888877662 223567788999999999998843
Q ss_pred CCCcccccchhhhHhhcCC---cCCceEeecCCCCCc----cCchhhcCC-CCCCEEeccCCCCCC----CCcccccCCC
Q 045877 487 DIPHIEIESTDYLKGLKNM---KELRLLSLQGMSGIQ----ELPSEISYL-TSLEILDLRACYNLD----KLPDEIGKLK 554 (801)
Q Consensus 487 ~~~~~~~~~~~lp~~l~~l---~~L~~L~Ls~n~~~~----~lp~~i~~L-~~L~~L~Ls~n~~~~----~lp~~~~~L~ 554 (801)
..+..+..+ ++|++|++++|.+.. .+...+..+ ++|+.|+|++|.+.+ .++..+..+.
T Consensus 96 ----------~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 165 (319)
T cd00116 96 ----------DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR 165 (319)
T ss_pred ----------hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCC
Confidence 223333333 459999999987652 334456677 899999999997763 2345567788
Q ss_pred CCCEEcccCCcccc----CCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccCh
Q 045877 555 SLTHLDISECFLLD----GIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENL 630 (801)
Q Consensus 555 ~L~~L~Ls~n~l~~----~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~ 630 (801)
+|++|++++|.+.+ .++..+..+++|++|+ +++|.... .........+..+++|++|++++|.+.... .
T Consensus 166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~---L~~n~i~~--~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~--~ 238 (319)
T cd00116 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLD---LNNNGLTD--EGASALAETLASLKSLEVLNLGDNNLTDAG--A 238 (319)
T ss_pred CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEe---ccCCccCh--HHHHHHHHHhcccCCCCEEecCCCcCchHH--H
Confidence 99999999998874 2334456667889888 77776111 001122345677899999999999887533 2
Q ss_pred hhhh-----cccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCc
Q 045877 631 STVL-----AFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPS 705 (801)
Q Consensus 631 ~~l~-----~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~ 705 (801)
..+. ..+.|++|++++|.++..... . +....+.. ++|+.|++++|.+...+.
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~---------------~-------l~~~~~~~-~~L~~l~l~~N~l~~~~~ 295 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAK---------------D-------LAEVLAEK-ESLLELDLRGNKFGEEGA 295 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHH---------------H-------HHHHHhcC-CCccEEECCCCCCcHHHH
Confidence 2222 237999999999987632110 0 11112222 689999999998764321
Q ss_pred -----ccCCCCC-CCccEEEeeCCcC
Q 045877 706 -----WVHPYSF-KNLKNLYIRGGRL 725 (801)
Q Consensus 706 -----~l~~~~l-~~L~~L~L~~n~l 725 (801)
.+. .. +.|++|++.+|.+
T Consensus 296 ~~~~~~~~--~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 296 QLLAESLL--EPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHh--hcCCchhhcccCCCCC
Confidence 111 23 6888888887753
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.04 E-value=1.3e-11 Score=132.81 Aligned_cols=197 Identities=23% Similarity=0.237 Sum_probs=148.1
Q ss_pred CCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCccc
Q 045877 470 LEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDE 549 (801)
Q Consensus 470 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~ 549 (801)
+..-...||+.|++ ..+|..++.+..|..|.|..| .+..+|..+++|..|.+|||+.|+ +..+|..
T Consensus 74 ltdt~~aDlsrNR~------------~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~ 139 (722)
T KOG0532|consen 74 LTDTVFADLSRNRF------------SELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ-LSHLPDG 139 (722)
T ss_pred ccchhhhhcccccc------------ccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch-hhcCChh
Confidence 34456788999988 467888888888999999886 677889999999999999999984 5677888
Q ss_pred ccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccC
Q 045877 550 IGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTEN 629 (801)
Q Consensus 550 ~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~ 629 (801)
++.|+ |+.|-+++|++ +.+|..++.+..|..|+ ++.|. +...+..++.+.+|+.|.+..|++...
T Consensus 140 lC~lp-Lkvli~sNNkl-~~lp~~ig~~~tl~~ld---~s~ne-------i~slpsql~~l~slr~l~vrRn~l~~l--- 204 (722)
T KOG0532|consen 140 LCDLP-LKVLIVSNNKL-TSLPEEIGLLPTLAHLD---VSKNE-------IQSLPSQLGYLTSLRDLNVRRNHLEDL--- 204 (722)
T ss_pred hhcCc-ceeEEEecCcc-ccCCcccccchhHHHhh---hhhhh-------hhhchHHhhhHHHHHHHHHhhhhhhhC---
Confidence 88876 89999999985 47888888888888888 77777 566788888899999998888887655
Q ss_pred hhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCC
Q 045877 630 LSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHP 709 (801)
Q Consensus 630 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~ 709 (801)
+..+..| .|..||+++|++..... .+.. .++|++|-|.+|.+..-|..++.
T Consensus 205 p~El~~L-pLi~lDfScNkis~iPv---------------------------~fr~-m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 205 PEELCSL-PLIRLDFSCNKISYLPV---------------------------DFRK-MRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred CHHHhCC-ceeeeecccCceeecch---------------------------hhhh-hhhheeeeeccCCCCCChHHHHh
Confidence 4555544 57788888887764321 1112 26788888888888777766542
Q ss_pred -CCCCCccEEEeeCCc
Q 045877 710 -YSFKNLKNLYIRGGR 724 (801)
Q Consensus 710 -~~l~~L~~L~L~~n~ 724 (801)
+...--++|+...|+
T Consensus 256 kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 256 KGKVHIFKYLSTQACQ 271 (722)
T ss_pred ccceeeeeeecchhcc
Confidence 233344677777774
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.00 E-value=2.9e-10 Score=135.77 Aligned_cols=153 Identities=30% Similarity=0.359 Sum_probs=107.6
Q ss_pred cCceeeecCCcccCCCChhhhccCCCCCEEEcCCcc--cCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCch
Q 045877 447 GRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQ--STVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPS 524 (801)
Q Consensus 447 ~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~ 524 (801)
...+.+.+-+|.+..+.. =..++.|++|-+.+|. +.. .-.+.|..++.|++|||++|.-.+.+|.
T Consensus 523 ~~~rr~s~~~~~~~~~~~--~~~~~~L~tLll~~n~~~l~~-----------is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAG--SSENPKLRTLLLQRNSDWLLE-----------ISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred hheeEEEEeccchhhccC--CCCCCccceEEEeecchhhhh-----------cCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 355666666666655432 1344578899888885 311 1234578899999999999888899999
Q ss_pred hhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCc
Q 045877 525 EISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSL 604 (801)
Q Consensus 525 ~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~ 604 (801)
+|++|.+|++|+|+++ .+..+|..+++|.+|.+|++..+.....+|..+..|.+|++|.++.-.... .....
T Consensus 590 ~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-------~~~~l 661 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN-------DKLLL 661 (889)
T ss_pred HHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc-------chhhH
Confidence 9999999999999996 566889999999999999999887666666666678888888854332111 22334
Q ss_pred ccccCCccCCeeEeec
Q 045877 605 KDLEKLEHLRKLTINI 620 (801)
Q Consensus 605 ~~l~~L~~L~~L~L~~ 620 (801)
.++.+|.+|+.|....
T Consensus 662 ~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 662 KELENLEHLENLSITI 677 (889)
T ss_pred Hhhhcccchhhheeec
Confidence 4555666666665533
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.94 E-value=5.7e-11 Score=128.09 Aligned_cols=178 Identities=24% Similarity=0.305 Sum_probs=135.2
Q ss_pred hhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhh
Q 045877 420 EKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYL 499 (801)
Q Consensus 420 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp 499 (801)
-.+..-...||+.|++..++.. +..+..|..+.+..|+|..+ +..+.++..|..|||+.|++ ..+|
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n~~r~i-p~~i~~L~~lt~l~ls~Nql------------S~lp 137 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHNCIRTI-PEAICNLEALTFLDLSSNQL------------SHLP 137 (722)
T ss_pred ccccchhhhhccccccccCchH-HHHHHHHHHHHHHhccceec-chhhhhhhHHHHhhhccchh------------hcCC
Confidence 3455566788999998876443 33455677777778887665 55677888888888888888 4667
Q ss_pred HhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCc
Q 045877 500 KGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSK 579 (801)
Q Consensus 500 ~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~ 579 (801)
..++.|+ |+.|-+++| .++.+|..++.+..|..||.+.| -+..+|..++.|.+|+.|.+..|.+. .+|..+..| .
T Consensus 138 ~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-p 212 (722)
T KOG0532|consen 138 DGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-P 212 (722)
T ss_pred hhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-c
Confidence 7777776 888888876 66788888888888888888887 45567778888888888888888754 677777755 4
Q ss_pred ccccccccccCCcchhhhhhcccCcccccCCccCCeeEeeccccccc
Q 045877 580 LQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQ 626 (801)
Q Consensus 580 L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~ 626 (801)
|..|+ ++.|+ +..+|-.|.+|+.|++|-|.+|.+...
T Consensus 213 Li~lD---fScNk-------is~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 213 LIRLD---FSCNK-------ISYLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred eeeee---cccCc-------eeecchhhhhhhhheeeeeccCCCCCC
Confidence 77777 88887 667788888888888888888887654
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.87 E-value=1.4e-10 Score=118.61 Aligned_cols=265 Identities=14% Similarity=0.100 Sum_probs=142.3
Q ss_pred chhhhhhhhccccccccccchhhcch----hhhhhccccCceeeecCCcccCCC-----------ChhhhccCCCCCEEE
Q 045877 413 EQKAVEFEKIKKLFNFSLSLEEIENK----AKDCAMKRGRIETLFNVSEEFPEF-----------KYDWFSKLEKIKVLY 477 (801)
Q Consensus 413 ~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~~~~L~~L~l~~n~i~~~-----------~~~~f~~l~~L~~L~ 477 (801)
+........+.+++.++||+|.|..- +..++.+.++|+...++. -+.+- ....+.++++|++||
T Consensus 20 ~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld 98 (382)
T KOG1909|consen 20 KDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLD 98 (382)
T ss_pred hhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEee
Confidence 33455667788899999999988643 334444555555544322 11110 011223344444444
Q ss_pred cCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCc-hhhcCCCCCCEEeccCCCCCCCCcccccCCCCC
Q 045877 478 LGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELP-SEISYLTSLEILDLRACYNLDKLPDEIGKLKSL 556 (801)
Q Consensus 478 Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L 556 (801)
||+|-|-...+ ..+-..+.++..|+.|.|.+|.+ +..- ..+++ -|..|. .+ .-++.-++|
T Consensus 99 LSDNA~G~~g~-------~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~--al~~l~--~~-------kk~~~~~~L 159 (382)
T KOG1909|consen 99 LSDNAFGPKGI-------RGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGR--ALFELA--VN-------KKAASKPKL 159 (382)
T ss_pred ccccccCccch-------HHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHH--HHHHHH--HH-------hccCCCcce
Confidence 44444421110 12223333444444444444421 1111 11110 011111 01 112334578
Q ss_pred CEEcccCCcccc----CCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccc--cCh
Q 045877 557 THLDISECFLLD----GIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQT--ENL 630 (801)
Q Consensus 557 ~~L~Ls~n~l~~----~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~--~~~ 630 (801)
+++...+|++.. .+...|...+.|+.+. +..|...+.+. ......|.++++|++|||..|.++... ...
T Consensus 160 rv~i~~rNrlen~ga~~~A~~~~~~~~leevr---~~qN~I~~eG~--~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 160 RVFICGRNRLENGGATALAEAFQSHPTLEEVR---LSQNGIRPEGV--TALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred EEEEeeccccccccHHHHHHHHHhccccceEE---EecccccCchh--HHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 888888887532 2223456667777776 66665211111 112346788999999999999886543 224
Q ss_pred hhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCC-----CCc
Q 045877 631 STVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEK-----LPS 705 (801)
Q Consensus 631 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~-----lp~ 705 (801)
..+..+++|+.|++++|.+.......+ . ..+... .+.|+.|.|.+|.++. +-.
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~-----------~----------~al~~~-~p~L~vl~l~gNeIt~da~~~la~ 292 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAF-----------V----------DALKES-APSLEVLELAGNEITRDAALALAA 292 (382)
T ss_pred HHhcccchheeecccccccccccHHHH-----------H----------HHHhcc-CCCCceeccCcchhHHHHHHHHHH
Confidence 567888899999999998875443211 1 111111 3689999999987653 222
Q ss_pred ccCCCCCCCccEEEeeCCcCC
Q 045877 706 WVHPYSFKNLKNLYIRGGRLN 726 (801)
Q Consensus 706 ~l~~~~l~~L~~L~L~~n~l~ 726 (801)
.+. ..+.|.+|+|++|.+.
T Consensus 293 ~~~--ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 293 CMA--EKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHh--cchhhHHhcCCccccc
Confidence 333 6889999999999984
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.83 E-value=5.6e-09 Score=116.52 Aligned_cols=197 Identities=22% Similarity=0.268 Sum_probs=151.9
Q ss_pred cccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccC-CCCCEEEcCCcccCCCCCCcccccchhhhHhhcCC
Q 045877 427 NFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKL-EKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNM 505 (801)
Q Consensus 427 ~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l 505 (801)
.++++.|++........ ..+.+..|.+.+|.+..+++ ....+ .+|+.|++++|.+ ..+|..++.+
T Consensus 97 ~l~~~~~~~~~~~~~~~-~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i------------~~l~~~~~~l 162 (394)
T COG4886 97 SLDLNLNRLRSNISELL-ELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKI------------ESLPSPLRNL 162 (394)
T ss_pred eeeccccccccCchhhh-cccceeEEecCCcccccCcc-ccccchhhcccccccccch------------hhhhhhhhcc
Confidence 46677777643333332 34678888888888887754 23444 3899999999988 4566778999
Q ss_pred cCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCccccccc
Q 045877 506 KELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKG 585 (801)
Q Consensus 506 ~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~ 585 (801)
++|+.|++++| .+..+|...+.+.+|+.|++++| .+..+|..+..+..|+.|.+++|.+. .++..+.++.++..|.
T Consensus 163 ~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~- 238 (394)
T COG4886 163 PNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLE- 238 (394)
T ss_pred ccccccccCCc-hhhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccc-
Confidence 99999999997 56778877778999999999998 56677877777778999999999633 4566788888888887
Q ss_pred ccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCC
Q 045877 586 FVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKS 654 (801)
Q Consensus 586 ~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 654 (801)
+.+|. ....+..++.+++|+.|++++|.+.... .+..+.+|+.|++++|.+....+
T Consensus 239 --l~~n~-------~~~~~~~~~~l~~l~~L~~s~n~i~~i~----~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 239 --LSNNK-------LEDLPESIGNLSNLETLDLSNNQISSIS----SLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred --cCCce-------eeeccchhccccccceeccccccccccc----cccccCccCEEeccCccccccch
Confidence 77777 4444678889999999999999987754 28889999999999998876543
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.82 E-value=1.3e-09 Score=108.91 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=92.4
Q ss_pred cccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccc
Q 045877 606 DLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQH 685 (801)
Q Consensus 606 ~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~ 685 (801)
.+.....|+.|||++|.|.... .++.-++.++.|++++|.+..+... ..
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iD---ESvKL~Pkir~L~lS~N~i~~v~nL----------------------------a~ 327 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQID---ESVKLAPKLRRLILSQNRIRTVQNL----------------------------AE 327 (490)
T ss_pred ecchHhhhhhccccccchhhhh---hhhhhccceeEEeccccceeeehhh----------------------------hh
Confidence 3444567888899999887663 5666778889999999887754311 11
Q ss_pred cCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccccc--------Cc
Q 045877 686 VESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ--------EL 757 (801)
Q Consensus 686 ~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~--------~~ 757 (801)
.++|+.|||++|.+..+..|-. .+.|.+.|.|++|.|..+.. + ..|-+|.+|+++.|++. |.
T Consensus 328 -L~~L~~LDLS~N~Ls~~~Gwh~--KLGNIKtL~La~N~iE~LSG--L-----~KLYSLvnLDl~~N~Ie~ldeV~~IG~ 397 (490)
T KOG1259|consen 328 -LPQLQLLDLSGNLLAECVGWHL--KLGNIKTLKLAQNKIETLSG--L-----RKLYSLVNLDLSSNQIEELDEVNHIGN 397 (490)
T ss_pred -cccceEeecccchhHhhhhhHh--hhcCEeeeehhhhhHhhhhh--h-----HhhhhheeccccccchhhHHHhccccc
Confidence 3688999999998888888876 88899999999998766643 2 24567788888888876 77
Q ss_pred CCCCceeeccCCC
Q 045877 758 FPKLEYLEKFKCH 770 (801)
Q Consensus 758 ~p~L~~L~l~~c~ 770 (801)
+|+|+.|.+.+.|
T Consensus 398 LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 398 LPCLETLRLTGNP 410 (490)
T ss_pred ccHHHHHhhcCCC
Confidence 8888888877754
No 31
>PLN03150 hypothetical protein; Provisional
Probab=98.78 E-value=1.1e-08 Score=119.86 Aligned_cols=107 Identities=24% Similarity=0.288 Sum_probs=86.1
Q ss_pred CCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCccccc
Q 045877 472 KIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIG 551 (801)
Q Consensus 472 ~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~ 551 (801)
.++.|+|++|.+.+ .+|..++.+++|++|+|++|.+.+.+|..++.|++|++|+|++|.+.+.+|..++
T Consensus 419 ~v~~L~L~~n~L~g-----------~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~ 487 (623)
T PLN03150 419 FIDGLGLDNQGLRG-----------FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG 487 (623)
T ss_pred EEEEEECCCCCccc-----------cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh
Confidence 36788888888853 4577888889999999998888888888888899999999999888888888888
Q ss_pred CCCCCCEEcccCCccccCCCcccCCC-CcccccccccccCCc
Q 045877 552 KLKSLTHLDISECFLLDGIPKKLSLL-SKLQVLKGFVISDHA 592 (801)
Q Consensus 552 ~L~~L~~L~Ls~n~l~~~~p~~~~~L-~~L~~L~~~~l~~n~ 592 (801)
+|++|++|+|++|.+.+.+|..++.+ .++..++ +.+|.
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~---~~~N~ 526 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNA 526 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhccccCceEE---ecCCc
Confidence 99999999999998888888877653 3444454 55554
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.74 E-value=2.4e-09 Score=107.00 Aligned_cols=142 Identities=21% Similarity=0.182 Sum_probs=96.0
Q ss_pred CCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeeccccc
Q 045877 545 KLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEK 624 (801)
Q Consensus 545 ~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~ 624 (801)
..-..+..++.|+.||||+|.++ .+..+..-++.++.|+ ++.|. + .....+..|.+|+.|||++|.++
T Consensus 275 ~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~---lS~N~-------i-~~v~nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 275 SALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLI---LSQNR-------I-RTVQNLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred ceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEe---ccccc-------e-eeehhhhhcccceEeecccchhH
Confidence 33344555677888888888754 5666667777777777 77776 2 23455777888888888888776
Q ss_pred ccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCC
Q 045877 625 FQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLP 704 (801)
Q Consensus 625 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp 704 (801)
... .+-..+-+++.|.|+.|.+.... .| - . .-+|..||+++|++..+.
T Consensus 343 ~~~---Gwh~KLGNIKtL~La~N~iE~LS-----------------GL----------~-K-LYSLvnLDl~~N~Ie~ld 390 (490)
T KOG1259|consen 343 ECV---GWHLKLGNIKTLKLAQNKIETLS-----------------GL----------R-K-LYSLVNLDLSSNQIEELD 390 (490)
T ss_pred hhh---hhHhhhcCEeeeehhhhhHhhhh-----------------hh----------H-h-hhhheeccccccchhhHH
Confidence 553 44455667777888777654211 11 0 1 257888888888877765
Q ss_pred cccCCCCCCCccEEEeeCCcCCCCCC
Q 045877 705 SWVHPYSFKNLKNLYIRGGRLNSLEG 730 (801)
Q Consensus 705 ~~l~~~~l~~L~~L~L~~n~l~~~~~ 730 (801)
..-..+++|+|+.|.|.+|.+.+++.
T Consensus 391 eV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 391 EVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred HhcccccccHHHHHhhcCCCccccch
Confidence 54334589999999999998887765
No 33
>PLN03150 hypothetical protein; Provisional
Probab=98.73 E-value=2.5e-08 Score=116.78 Aligned_cols=112 Identities=22% Similarity=0.218 Sum_probs=93.7
Q ss_pred CceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhc
Q 045877 448 RIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEIS 527 (801)
Q Consensus 448 ~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~ 527 (801)
.+..|.+.+|.+.+..+..|..+++|+.|+|++|.+++ .+|..++.+++|++|+|++|.+.+.+|..++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-----------~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~ 487 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-----------NIPPSLGSITSLEVLDLSYNSFNGSIPESLG 487 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-----------cCChHHhCCCCCCEEECCCCCCCCCCchHHh
Confidence 36677788888887778888999999999999998853 5678889999999999999988899999999
Q ss_pred CCCCCCEEeccCCCCCCCCcccccCC-CCCCEEcccCCccccCC
Q 045877 528 YLTSLEILDLRACYNLDKLPDEIGKL-KSLTHLDISECFLLDGI 570 (801)
Q Consensus 528 ~L~~L~~L~Ls~n~~~~~lp~~~~~L-~~L~~L~Ls~n~l~~~~ 570 (801)
+|++|++|+|++|.+.+.+|..++.+ .++..+++.+|......
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCC
Confidence 99999999999999999999888764 46778888888654333
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.72 E-value=1.3e-08 Score=113.59 Aligned_cols=75 Identities=35% Similarity=0.527 Sum_probs=33.5
Q ss_pred CCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccc
Q 045877 507 ELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLK 584 (801)
Q Consensus 507 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~ 584 (801)
+|++|++++| -+..+|..++.+++|+.|++++| .+..+|...+.+++|+.|++++|++. .+|..+..+..|++|.
T Consensus 141 nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 141 NLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELD 215 (394)
T ss_pred hccccccccc-chhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhh
Confidence 4555555554 23344444455555555555554 22333333334445555555555432 3333333333344444
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.71 E-value=3.7e-09 Score=108.33 Aligned_cols=237 Identities=18% Similarity=0.134 Sum_probs=135.0
Q ss_pred hhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCc----cCchh-------hcCCCCCC
Q 045877 465 DWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQ----ELPSE-------ISYLTSLE 533 (801)
Q Consensus 465 ~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~----~lp~~-------i~~L~~L~ 533 (801)
.....+..+..|+||+|.+-... ...+-..+.+.++|+..++++ -++| ++|+. +-..++|+
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EA-------a~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~ 95 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEA-------ARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQ 95 (382)
T ss_pred HHhcccCceEEEeccCCchhHHH-------HHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCcee
Confidence 34567788899999999772211 123456677788899999887 3444 34433 33567888
Q ss_pred EEeccCCCCCCCCccc----ccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccC
Q 045877 534 ILDLRACYNLDKLPDE----IGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEK 609 (801)
Q Consensus 534 ~L~Ls~n~~~~~lp~~----~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~ 609 (801)
+||||+|.+...-+.. +.++..|++|+|.+|.+...--..++ ..|..|. . + .-.+.
T Consensus 96 ~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~---~--~-------------kk~~~ 155 (382)
T KOG1909|consen 96 KLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA---V--N-------------KKAAS 155 (382)
T ss_pred EeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH---H--H-------------hccCC
Confidence 8999888665444433 45577888888888875311000111 1233322 1 1 12234
Q ss_pred CccCCeeEeeccccccccc--ChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccC
Q 045877 610 LEHLRKLTININSEKFQTE--NLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVE 687 (801)
Q Consensus 610 L~~L~~L~L~~n~~~~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~ 687 (801)
-++|+++...+|++..... ....|...+.|+.+.+..|.+........ ..++ ..+
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al---------------------~eal--~~~ 212 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTAL---------------------AEAL--EHC 212 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHH---------------------HHHH--HhC
Confidence 4567777777777654431 13456666777888877776653221000 0111 113
Q ss_pred CCccEEEccCCCCCC-----CCcccCCCCCCCccEEEeeCCcCCCCCCCcc-cccceecccccccccccccccc
Q 045877 688 SKLEKLDFQCFPDEK-----LPSWVHPYSFKNLKNLYIRGGRLNSLEGSEW-ETVKVLRLKYLNELKIDWKGLQ 755 (801)
Q Consensus 688 ~~L~~L~L~~n~~~~-----lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f-~~L~~l~L~~L~~L~l~~n~l~ 755 (801)
++|+.|||..|.++. +...+. .+++|+.|++++|.+..-+...| ..++.. .++|+.|.+.+|.++
T Consensus 213 ~~LevLdl~DNtft~egs~~LakaL~--s~~~L~El~l~dcll~~~Ga~a~~~al~~~-~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 213 PHLEVLDLRDNTFTLEGSVALAKALS--SWPHLRELNLGDCLLENEGAIAFVDALKES-APSLEVLELAGNEIT 283 (382)
T ss_pred CcceeeecccchhhhHHHHHHHHHhc--ccchheeecccccccccccHHHHHHHHhcc-CCCCceeccCcchhH
Confidence 678888887775543 111222 45678888888888776655222 222222 556666666666665
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=4.5e-09 Score=110.51 Aligned_cols=217 Identities=18% Similarity=0.139 Sum_probs=127.2
Q ss_pred hhhhhhccccccccccchhhcchhh-hhhccccCceeeecCCcccCCCCh--hhhccCCCCCEEEcCCcccCCCCCCccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAK-DCAMKRGRIETLFNVSEEFPEFKY--DWFSKLEKIKVLYLGRWQSTVDDIPHIE 492 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~--~~f~~l~~L~~L~Ls~n~l~~~~~~~~~ 492 (801)
+..=.++++|+.+.|.+..+.-... .....+++++.|+++.|-|....+ .....+++|+.|+|+.|++....
T Consensus 114 ~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~----- 188 (505)
T KOG3207|consen 114 AAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI----- 188 (505)
T ss_pred HHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc-----
Confidence 3344566667777777666544332 344456777777777776655432 44567778888888888773211
Q ss_pred ccchhhhHhhcCCcCCceEeecCCCCCcc-CchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCC
Q 045877 493 IESTDYLKGLKNMKELRLLSLQGMSGIQE-LPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIP 571 (801)
Q Consensus 493 ~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p 571 (801)
.+ ..-..+.+|+.|.|+.|.+... +-..+..+++|+.|+|.+|......-....-+..|+.|||++|.+.. .+
T Consensus 189 ---~s--~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~ 262 (505)
T KOG3207|consen 189 ---SS--NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FD 262 (505)
T ss_pred ---cc--cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cc
Confidence 00 0112566777788887755432 22334557788888888775333333334456677888888777542 22
Q ss_pred --cccCCCCcccccccccccCCcchhhhhhcccCccc-----ccCCccCCeeEeecccccccccChhhhhcccCCcEEEe
Q 045877 572 --KKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKD-----LEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKV 644 (801)
Q Consensus 572 --~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~-----l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L 644 (801)
...+.++.|..|. ++.+. +.....++. ....++|++|++..|++..-. ....+..+.+|+.|.+
T Consensus 263 ~~~~~~~l~~L~~Ln---ls~tg-----i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~-sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 263 QGYKVGTLPGLNQLN---LSSTG-----IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR-SLNHLRTLENLKHLRI 333 (505)
T ss_pred cccccccccchhhhh---ccccC-----cchhcCCCccchhhhcccccceeeecccCcccccc-ccchhhccchhhhhhc
Confidence 2356666666666 55544 122222222 345677888888888774321 1455566677777777
Q ss_pred eccCCCCC
Q 045877 645 SWGGGSAN 652 (801)
Q Consensus 645 ~~n~l~~~ 652 (801)
..|.++..
T Consensus 334 ~~n~ln~e 341 (505)
T KOG3207|consen 334 TLNYLNKE 341 (505)
T ss_pred cccccccc
Confidence 77777643
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.3e-09 Score=112.63 Aligned_cols=192 Identities=20% Similarity=0.190 Sum_probs=114.0
Q ss_pred hcCCcCCceEeecCCCCCccCc--hhhcCCCCCCEEeccCCCCCCCC--cccccCCCCCCEEcccCCccccCCCcccCCC
Q 045877 502 LKNMKELRLLSLQGMSGIQELP--SEISYLTSLEILDLRACYNLDKL--PDEIGKLKSLTHLDISECFLLDGIPKKLSLL 577 (801)
Q Consensus 502 l~~l~~L~~L~Ls~n~~~~~lp--~~i~~L~~L~~L~Ls~n~~~~~l--p~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L 577 (801)
=.++.+|+...|.++ -++..+ .....|++++.|||++|-+.... -.....|++|+.|+|+.|++.-..
T Consensus 117 Qsn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~------- 188 (505)
T KOG3207|consen 117 QSNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI------- 188 (505)
T ss_pred hhhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc-------
Confidence 367889999999875 555555 35677899999999998443321 233456888888888888754111
Q ss_pred CcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCC
Q 045877 578 SKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKP 657 (801)
Q Consensus 578 ~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 657 (801)
+.+. -..++.|+.|.|+.|.++... ....+..+++|+.|+|..|......
T Consensus 189 -----------~s~~--------------~~~l~~lK~L~l~~CGls~k~-V~~~~~~fPsl~~L~L~~N~~~~~~---- 238 (505)
T KOG3207|consen 189 -----------SSNT--------------TLLLSHLKQLVLNSCGLSWKD-VQWILLTFPSLEVLYLEANEIILIK---- 238 (505)
T ss_pred -----------cccc--------------hhhhhhhheEEeccCCCCHHH-HHHHHHhCCcHHHhhhhccccccee----
Confidence 1111 013556677777777776432 1233556778888888777522111
Q ss_pred CCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccc
Q 045877 658 EPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVK 737 (801)
Q Consensus 658 ~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~ 737 (801)
......+..|+.|+|++|.+..++..-....|+.|..|+++.|.+..+......++.
T Consensus 239 -----------------------~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~ 295 (505)
T KOG3207|consen 239 -----------------------ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLD 295 (505)
T ss_pred -----------------------cchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchh
Confidence 111122466777777777766666433334777777777777776665432222221
Q ss_pred -eeccccccccccccccc
Q 045877 738 -VLRLKYLNELKIDWKGL 754 (801)
Q Consensus 738 -~l~L~~L~~L~l~~n~l 754 (801)
.-.+..|++|++..|.+
T Consensus 296 kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 296 KTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhcccccceeeecccCcc
Confidence 12345555555555555
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.67 E-value=8.3e-09 Score=99.40 Aligned_cols=131 Identities=24% Similarity=0.287 Sum_probs=45.7
Q ss_pred hccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhc-CCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCC
Q 045877 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLK-NMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDK 545 (801)
Q Consensus 467 f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~-~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~ 545 (801)
+.+..+++.|+|++|.|+. .+.++ .+.+|+.|+|++|. +..+. .+..|+.|++|++++|.+. .
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-------------Ie~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~I~-~ 78 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-------------IENLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNRIS-S 78 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S
T ss_pred ccccccccccccccccccc-------------ccchhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCCCC-c
Confidence 4556667888888887742 13344 46778888888763 44453 3667777888888877544 3
Q ss_pred Ccccc-cCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeeccccc
Q 045877 546 LPDEI-GKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEK 624 (801)
Q Consensus 546 lp~~~-~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~ 624 (801)
+...+ ..+++|++|++++|++.. + .....+..+++|+.|+|.+|.+.
T Consensus 79 i~~~l~~~lp~L~~L~L~~N~I~~--------l------------------------~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLSNNKISD--------L------------------------NELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -CHHHHHH-TT--EEE-TTS---S--------C------------------------CCCGGGGG-TT--EEE-TT-GGG
T ss_pred cccchHHhCCcCCEEECcCCcCCC--------h------------------------HHhHHHHcCCCcceeeccCCccc
Confidence 43334 357777777777776531 1 11234556778888888888876
Q ss_pred ccccC-hhhhhcccCCcEEEee
Q 045877 625 FQTEN-LSTVLAFKRLLQLKVS 645 (801)
Q Consensus 625 ~~~~~-~~~l~~l~~L~~L~L~ 645 (801)
....- ...+..+++|+.||-.
T Consensus 127 ~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 127 EKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp GSTTHHHHHHHH-TT-SEETTE
T ss_pred chhhHHHHHHHHcChhheeCCE
Confidence 44211 3457788888888754
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=3.7e-08 Score=94.92 Aligned_cols=128 Identities=21% Similarity=0.246 Sum_probs=48.9
Q ss_pred ccCceeeecCCcccCCCChhhhc-cCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCch
Q 045877 446 RGRIETLFNVSEEFPEFKYDWFS-KLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPS 524 (801)
Q Consensus 446 ~~~L~~L~l~~n~i~~~~~~~f~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~ 524 (801)
..+++.|.+.+|.|+.+. .+. .+.+|++|+|++|.++.. +.+..+++|++|++++|. +..+..
T Consensus 18 ~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l-------------~~l~~L~~L~~L~L~~N~-I~~i~~ 81 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKL-------------EGLPGLPRLKTLDLSNNR-ISSISE 81 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---------------TT----TT--EEE--SS----S-CH
T ss_pred cccccccccccccccccc--chhhhhcCCCEEECCCCCCccc-------------cCccChhhhhhcccCCCC-CCcccc
Confidence 335566666666666543 233 467788888888888432 356678888888888874 445544
Q ss_pred hh-cCCCCCCEEeccCCCCCCCC-cccccCCCCCCEEcccCCccccCCCc----ccCCCCcccccccccccC
Q 045877 525 EI-SYLTSLEILDLRACYNLDKL-PDEIGKLKSLTHLDISECFLLDGIPK----KLSLLSKLQVLKGFVISD 590 (801)
Q Consensus 525 ~i-~~L~~L~~L~Ls~n~~~~~l-p~~~~~L~~L~~L~Ls~n~l~~~~p~----~~~~L~~L~~L~~~~l~~ 590 (801)
.+ ..+++|++|+|++|++...- -..+..+++|++|+|.+|.++.. +. .+..+++|+.||+..+..
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEETTS
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEccH
Confidence 44 46888888888888653311 13466788888999988887642 22 256788888888554433
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.42 E-value=7.6e-08 Score=107.78 Aligned_cols=201 Identities=25% Similarity=0.264 Sum_probs=120.8
Q ss_pred ccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCc
Q 045877 468 SKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLP 547 (801)
Q Consensus 468 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp 547 (801)
..+..++.+++..|.+. .+...+..+.+|.+|++.+| .+..+...+..+++|++|+|++|.+...
T Consensus 69 ~~l~~l~~l~l~~n~i~------------~~~~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i-- 133 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA------------KILNHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKL-- 133 (414)
T ss_pred HHhHhHHhhccchhhhh------------hhhcccccccceeeeecccc-chhhcccchhhhhcchheeccccccccc--
Confidence 45566667777777663 22234677777888888776 3444444466777788888877744433
Q ss_pred ccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCccc-ccCCccCCeeEeeccccccc
Q 045877 548 DEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKD-LEKLEHLRKLTININSEKFQ 626 (801)
Q Consensus 548 ~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~-l~~L~~L~~L~L~~n~~~~~ 626 (801)
..+..+..|+.|++++|.+.. + ..+..+.+|+.++ ++.|. +..+... +..+.+|+.+++.+|.+...
T Consensus 134 ~~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~---l~~n~-------i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 134 EGLSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLD---LSYNR-------IVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred cchhhccchhhheeccCcchh-c-cCCccchhhhccc---CCcch-------hhhhhhhhhhhccchHHHhccCCchhcc
Confidence 235566667777777777642 1 2344566666666 66665 2111111 46666677777777765443
Q ss_pred ccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCC--CccEEEccCCCCCCCC
Q 045877 627 TENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVES--KLEKLDFQCFPDEKLP 704 (801)
Q Consensus 627 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~--~L~~L~L~~n~~~~lp 704 (801)
. .+..+..+..+++..|.+..... ... .. +|+.+++++|.+..++
T Consensus 202 ~----~~~~~~~l~~~~l~~n~i~~~~~---------------------------l~~--~~~~~L~~l~l~~n~i~~~~ 248 (414)
T KOG0531|consen 202 E----GLDLLKKLVLLSLLDNKISKLEG---------------------------LNE--LVMLHLRELYLSGNRISRSP 248 (414)
T ss_pred c----chHHHHHHHHhhcccccceeccC---------------------------ccc--chhHHHHHHhcccCcccccc
Confidence 2 23333344444555555443211 000 11 3889999999888776
Q ss_pred cccCCCCCCCccEEEeeCCcCCCCCC
Q 045877 705 SWVHPYSFKNLKNLYIRGGRLNSLEG 730 (801)
Q Consensus 705 ~~l~~~~l~~L~~L~L~~n~l~~~~~ 730 (801)
..+. .+.++..|++.+|++..+..
T Consensus 249 ~~~~--~~~~l~~l~~~~n~~~~~~~ 272 (414)
T KOG0531|consen 249 EGLE--NLKNLPVLDLSSNRISNLEG 272 (414)
T ss_pred cccc--ccccccccchhhcccccccc
Confidence 5544 78899999999998776654
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.41 E-value=6.6e-08 Score=108.30 Aligned_cols=198 Identities=26% Similarity=0.268 Sum_probs=122.1
Q ss_pred hhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhh
Q 045877 420 EKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYL 499 (801)
Q Consensus 420 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp 499 (801)
..+..+..+.+..|.|.. .-.....+.++..|.+..|.|..+... +..+.+|++|+|++|.|+..
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i------------- 133 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKL------------- 133 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccc-------------
Confidence 455666666777787766 222344567777777777777765322 56788888888888887532
Q ss_pred HhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCccc-ccCCCCCCEEcccCCccccCCCcccCCCC
Q 045877 500 KGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDE-IGKLKSLTHLDISECFLLDGIPKKLSLLS 578 (801)
Q Consensus 500 ~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~-~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~ 578 (801)
..+..+..|+.|++++|. +..+. .+..+..|+.+++++|.+...-+ . ...+.+|+.+++.+|.+... ..+..+.
T Consensus 134 ~~l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~ 208 (414)
T KOG0531|consen 134 EGLSTLTLLKELNLSGNL-ISDIS-GLESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIREI--EGLDLLK 208 (414)
T ss_pred cchhhccchhhheeccCc-chhcc-CCccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchhcc--cchHHHH
Confidence 345666778888888874 44443 35557888888888875544322 1 46777888888888875421 2233333
Q ss_pred cccccccccccCCcchhhhhhcccCcccccCCcc--CCeeEeecccccccccChhhhhcccCCcEEEeeccCCCC
Q 045877 579 KLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEH--LRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSA 651 (801)
Q Consensus 579 ~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~--L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 651 (801)
.+..++ +..|. . .....+..+.. |+.+++.+|.+.... ..+..+..+..|++..|.+..
T Consensus 209 ~l~~~~---l~~n~-------i-~~~~~l~~~~~~~L~~l~l~~n~i~~~~---~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 209 KLVLLS---LLDNK-------I-SKLEGLNELVMLHLRELYLSGNRISRSP---EGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred HHHHhh---ccccc-------c-eeccCcccchhHHHHHHhcccCcccccc---ccccccccccccchhhccccc
Confidence 333333 44444 1 12223333333 778888888766531 345666777778887777654
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.35 E-value=2e-07 Score=73.63 Aligned_cols=58 Identities=22% Similarity=0.220 Sum_probs=26.9
Q ss_pred ccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCc
Q 045877 424 KLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRW 481 (801)
Q Consensus 424 ~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n 481 (801)
+|+.|++++|+|+.+.+..|..+++|++|++.+|.+..+++..|.++++|+.|+|++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444555555544444444444444444444444444444444444444444444444
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.32 E-value=3.2e-07 Score=72.48 Aligned_cols=59 Identities=31% Similarity=0.312 Sum_probs=28.6
Q ss_pred CCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCc
Q 045877 507 ELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECF 565 (801)
Q Consensus 507 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~ 565 (801)
+|++|+|++|.+...-+..|.++++|++|++++|.+....|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555543222222344555555555555554444434455555555555555554
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=3.3e-08 Score=99.03 Aligned_cols=136 Identities=21% Similarity=0.255 Sum_probs=65.1
Q ss_pred cccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccc
Q 045877 606 DLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQH 685 (801)
Q Consensus 606 ~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~ 685 (801)
.+.+-.+|+.|+|+.+.--.....--.+.+++.|..|+|+||.+..... .....+
T Consensus 229 ~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~V-------------------------tv~V~h 283 (419)
T KOG2120|consen 229 TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKV-------------------------TVAVAH 283 (419)
T ss_pred HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhh-------------------------hHHHhh
Confidence 3445556666666655321111112345667777777777776654321 111222
Q ss_pred cCCCccEEEccCCCC----CCCCcccCCCCCCCccEEEeeCCc-CCCCCC---Ccccccceeccccccccccccccc-c-
Q 045877 686 VESKLEKLDFQCFPD----EKLPSWVHPYSFKNLKNLYIRGGR-LNSLEG---SEWETVKVLRLKYLNELKIDWKGL-Q- 755 (801)
Q Consensus 686 ~~~~L~~L~L~~n~~----~~lp~~l~~~~l~~L~~L~L~~n~-l~~~~~---~~f~~L~~l~L~~L~~L~l~~n~l-~- 755 (801)
...+|+.|+|+|+.- ..+.... ..+|+|..|||++|. |+.-.. -.|+.|+++.+..|.-+. -+.+ .
T Consensus 284 ise~l~~LNlsG~rrnl~~sh~~tL~--~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~l 359 (419)
T KOG2120|consen 284 ISETLTQLNLSGYRRNLQKSHLSTLV--RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETLLEL 359 (419)
T ss_pred hchhhhhhhhhhhHhhhhhhHHHHHH--HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHeeee
Confidence 335667777766421 1111111 366777777777765 322111 123333333333333222 1111 1
Q ss_pred CcCCCCceeeccCCC
Q 045877 756 ELFPKLEYLEKFKCH 770 (801)
Q Consensus 756 ~~~p~L~~L~l~~c~ 770 (801)
+..|.|.+|++.+|-
T Consensus 360 ~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 360 NSKPSLVYLDVFGCV 374 (419)
T ss_pred ccCcceEEEEecccc
Confidence 567777777777753
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.02 E-value=9.5e-08 Score=106.13 Aligned_cols=181 Identities=17% Similarity=0.138 Sum_probs=102.3
Q ss_pred hhhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhcc----------CCCCCEEEcCCcccC
Q 045877 415 KAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSK----------LEKIKVLYLGRWQST 484 (801)
Q Consensus 415 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~----------l~~L~~L~Ls~n~l~ 484 (801)
.+.++..+++|++|.|....|.... +...--.+|+.|+ ..|.+..+ ...|.. .-.|.+.+.++|.++
T Consensus 101 ~pi~ifpF~sLr~LElrg~~L~~~~-GL~~lr~qLe~LI-C~~Sl~Al-~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 101 EPISIFPFRSLRVLELRGCDLSTAK-GLQELRHQLEKLI-CHNSLDAL-RHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CCceeccccceeeEEecCcchhhhh-hhHHHHHhhhhhh-hhccHHHH-HHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 3788899999999999998886521 1111111222221 11111110 001110 124667777777773
Q ss_pred CCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcc-cccCCCCCCEEcccC
Q 045877 485 VDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPD-EIGKLKSLTHLDISE 563 (801)
Q Consensus 485 ~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~-~~~~L~~L~~L~Ls~ 563 (801)
.+-.++.-++.|+.|+|++|.+... ..+..|++|++|||++|.+ ..+|. ....+. |+.|.+++
T Consensus 178 ------------~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 178 ------------LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCL-RHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred ------------hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchh-ccccccchhhhh-heeeeecc
Confidence 3445666677778888888755433 2567777888888887743 33443 222333 77777777
Q ss_pred CccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeeccccc
Q 045877 564 CFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEK 624 (801)
Q Consensus 564 n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~ 624 (801)
|.++.. .++.+|++|+.|+ ++.|. +.......-+..|..|+.|+|.+|.+-
T Consensus 242 N~l~tL--~gie~LksL~~LD---lsyNl-----l~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLD---LSYNL-----LSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccc---hhHhh-----hhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 765432 2456666666666 66665 222223344556667777777777653
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.00 E-value=1.2e-06 Score=87.02 Aligned_cols=231 Identities=16% Similarity=0.140 Sum_probs=137.4
Q ss_pred ccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCcc----Cc-------hhhcCCCCCCEEe
Q 045877 468 SKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQE----LP-------SEISYLTSLEILD 536 (801)
Q Consensus 468 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~----lp-------~~i~~L~~L~~L~ 536 (801)
.-+..+..++||+|-|.... ...+...+.+-.+|+..+++.- +++. ++ ..+-++++|+..+
T Consensus 27 ~~~d~~~evdLSGNtigtEA-------~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~ 98 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEA-------MEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVD 98 (388)
T ss_pred HhhcceeEEeccCCcccHHH-------HHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeee
Confidence 34667888899998773211 1344556667788888888873 4443 23 2345789999999
Q ss_pred ccCCCCCCCCccc----ccCCCCCCEEcccCCccccCCCc-ccCCCCcccccccccccCCcchhhhhhcccCcccccCCc
Q 045877 537 LRACYNLDKLPDE----IGKLKSLTHLDISECFLLDGIPK-KLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLE 611 (801)
Q Consensus 537 Ls~n~~~~~lp~~----~~~L~~L~~L~Ls~n~l~~~~p~-~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~ 611 (801)
||.|.+....|.. +++-+.|.||.|++|.+. .+.. .++ +.|++|- .|. -...-+
T Consensus 99 LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rig--kal~~la-----~nK-------------Kaa~kp 157 (388)
T COG5238 99 LSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIG--KALFHLA-----YNK-------------KAADKP 157 (388)
T ss_pred ccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHH--HHHHHHH-----HHh-------------hhccCC
Confidence 9999887766654 456678999999998753 2211 121 1233332 121 223456
Q ss_pred cCCeeEeecccccccccC--hhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCC
Q 045877 612 HLRKLTININSEKFQTEN--LSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESK 689 (801)
Q Consensus 612 ~L~~L~L~~n~~~~~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~ 689 (801)
.|+......|++...... ...+..-..|+.+.+..|.+...... .+-. .+... ..+
T Consensus 158 ~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~------------~L~~--------~gl~y--~~~ 215 (388)
T COG5238 158 KLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVT------------MLAF--------LGLFY--SHS 215 (388)
T ss_pred CceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhH------------HHHH--------HHHHH--hCc
Confidence 788888888877544311 12233335788888888876532110 0000 11111 368
Q ss_pred ccEEEccCCCCCC---------CCcccCCCCCCCccEEEeeCCcCCCCCCCc-ccccceecccccccccccccccc
Q 045877 690 LEKLDFQCFPDEK---------LPSWVHPYSFKNLKNLYIRGGRLNSLEGSE-WETVKVLRLKYLNELKIDWKGLQ 755 (801)
Q Consensus 690 L~~L~L~~n~~~~---------lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~-f~~L~~l~L~~L~~L~l~~n~l~ 755 (801)
|+.|+|+.|.++. ++.| +.|+.|.+.+|.++.-+... +........++|..|...+|...
T Consensus 216 LevLDlqDNtft~~gS~~La~al~~W------~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 216 LEVLDLQDNTFTLEGSRYLADALCEW------NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred ceeeeccccchhhhhHHHHHHHhccc------chhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 8888888876543 3444 45889999999887665422 22222334566666666777654
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.00 E-value=2.7e-07 Score=102.61 Aligned_cols=170 Identities=19% Similarity=0.217 Sum_probs=117.6
Q ss_pred hhhhccCCCCCEEEcCCcccCCCC-CCccc-----ccc----hhhhHhhc-------C---CcCCceEeecCCCCCccCc
Q 045877 464 YDWFSKLEKIKVLYLGRWQSTVDD-IPHIE-----IES----TDYLKGLK-------N---MKELRLLSLQGMSGIQELP 523 (801)
Q Consensus 464 ~~~f~~l~~L~~L~Ls~n~l~~~~-~~~~~-----~~~----~~lp~~l~-------~---l~~L~~L~Ls~n~~~~~lp 523 (801)
|-.+..++.||+|.|.++.+.... +-.+. +.+ ..+-..|. + ...|...+.++|. ...+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~-L~~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNR-LVLMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhh-HHhHH
Confidence 334567889999999999884321 00000 000 00111111 1 1346777777764 44566
Q ss_pred hhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcc-cCCCCcccccccccccCCcchhhhhhccc
Q 045877 524 SEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKK-LSLLSKLQVLKGFVISDHAEDDRRWKRWC 602 (801)
Q Consensus 524 ~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~-~~~L~~L~~L~~~~l~~n~~~~~~~~~~~ 602 (801)
.++.-++.|+.|+|++|++...- .+..|++|+||||++|.+. .+|.. ...+. |+.|. +.+|. ..
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~---lrnN~--------l~ 245 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLN---LRNNA--------LT 245 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeee---ecccH--------HH
Confidence 77888999999999999876653 7889999999999999865 45542 33343 88887 88887 23
Q ss_pred CcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCC
Q 045877 603 SLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGS 650 (801)
Q Consensus 603 ~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 650 (801)
....+.+|.+|+.||+++|-+.+..+ ...+..+..|+.|+|.+|.+.
T Consensus 246 tL~gie~LksL~~LDlsyNll~~hse-L~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 246 TLRGIENLKSLYGLDLSYNLLSEHSE-LEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhHHhhhhhhccchhHhhhhcchh-hhHHHHHHHHHHHhhcCCccc
Confidence 46678899999999999998876543 456777888999999999875
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.99 E-value=8.9e-07 Score=87.87 Aligned_cols=267 Identities=17% Similarity=0.123 Sum_probs=138.7
Q ss_pred hhhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCccccc
Q 045877 415 KAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIE 494 (801)
Q Consensus 415 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 494 (801)
....+..+..++.++||.|-|.......+.+ .+.+-++|++.+++.- +++.....+.-.
T Consensus 22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~--------------------~ia~~~~L~vvnfsd~-ftgr~kde~~~~ 80 (388)
T COG5238 22 VVEELEMMDELVEVDLSGNTIGTEAMEELCN--------------------VIANVRNLRVVNFSDA-FTGRDKDELYSN 80 (388)
T ss_pred HHHHHHhhcceeEEeccCCcccHHHHHHHHH--------------------HHhhhcceeEeehhhh-hhcccHHHHHHH
Confidence 4456667888999999999987654433321 1223344555555543 222111111111
Q ss_pred chhhhHhhcCCcCCceEeecCCCCCccCch----hhcCCCCCCEEeccCCCCCCCCc-cc-------------ccCCCCC
Q 045877 495 STDYLKGLKNMKELRLLSLQGMSGIQELPS----EISYLTSLEILDLRACYNLDKLP-DE-------------IGKLKSL 556 (801)
Q Consensus 495 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~----~i~~L~~L~~L~Ls~n~~~~~lp-~~-------------~~~L~~L 556 (801)
..-+...+.+|++|+..+|+.|.+....|+ .|+.-+.|.+|.|++|. .|.+. .. ..+-+.|
T Consensus 81 L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~L 159 (388)
T COG5238 81 LVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKL 159 (388)
T ss_pred HHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCc
Confidence 112334556677777777777655444443 34556677777777763 33221 11 2234567
Q ss_pred CEEcccCCccccCCC----cccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeeccccccccc--Ch
Q 045877 557 THLDISECFLLDGIP----KKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTE--NL 630 (801)
Q Consensus 557 ~~L~Ls~n~l~~~~p----~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~--~~ 630 (801)
+.+....|++...-- ..+..-.+|+.+. +..|..-+.+.... ....+..+.+|+.|||..|.++.... ..
T Consensus 160 e~vicgrNRlengs~~~~a~~l~sh~~lk~vk---i~qNgIrpegv~~L-~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 160 EVVICGRNRLENGSKELSAALLESHENLKEVK---IQQNGIRPEGVTML-AFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred eEEEeccchhccCcHHHHHHHHHhhcCceeEE---eeecCcCcchhHHH-HHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 888877777532110 1122234455554 44444111000000 01234567788888888887764431 13
Q ss_pred hhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCC--C-----C
Q 045877 631 STVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDE--K-----L 703 (801)
Q Consensus 631 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~--~-----l 703 (801)
..+..++.|+.|.+..|-++...... .++.. .....++|..|.+++|... . +
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~~~-----------v~~~f----------~e~~~p~l~~L~~~Yne~~~~~i~~~~l 294 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGVKS-----------VLRRF----------NEKFVPNLMPLPGDYNERRGGIILDISL 294 (388)
T ss_pred HHhcccchhhhccccchhhccccHHH-----------HHHHh----------hhhcCCCccccccchhhhcCceeeeech
Confidence 45667777888888888776543221 11111 1111256777777665321 1 2
Q ss_pred CcccCCCCCCCccEEEeeCCcCCCCC
Q 045877 704 PSWVHPYSFKNLKNLYIRGGRLNSLE 729 (801)
Q Consensus 704 p~~l~~~~l~~L~~L~L~~n~l~~~~ 729 (801)
+.... ..+|-|..|.+.+|+|....
T Consensus 295 ~~~e~-~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 295 NEFEQ-DAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred hhhhh-cccHHHHHHHHccCcchhHH
Confidence 22222 46777788888888776553
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=3.9e-06 Score=84.52 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=31.9
Q ss_pred CCcCCceEeecCCCCCc--cCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCc
Q 045877 504 NMKELRLLSLQGMSGIQ--ELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECF 565 (801)
Q Consensus 504 ~l~~L~~L~Ls~n~~~~--~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~ 565 (801)
.+.+++.|||.+|.+.. ++-.-+.+|+.|++|+|+.|.+...+-..=..+.+|+.|-|.+..
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG 132 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC
Confidence 45667777777764332 222333556677777777665443221111234456666665544
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.76 E-value=7.1e-06 Score=73.52 Aligned_cols=114 Identities=21% Similarity=0.185 Sum_probs=74.6
Q ss_pred ccccccccccchhhcchh--hhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhh
Q 045877 422 IKKLFNFSLSLEEIENKA--KDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYL 499 (801)
Q Consensus 422 l~~L~~L~Ls~N~l~~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp 499 (801)
-+.+..+||++++|-.+. +........|....++.|.+..+++.+-..++.++.|+|++|.+ ..+|
T Consensus 26 akE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~nei------------sdvP 93 (177)
T KOG4579|consen 26 AKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEI------------SDVP 93 (177)
T ss_pred HHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhh------------hhch
Confidence 345566788888776543 23344556666777777777777776666777777777777777 3556
Q ss_pred HhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCccc
Q 045877 500 KGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDE 549 (801)
Q Consensus 500 ~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~ 549 (801)
..+..++.||.|+++.|. +...|..|..|.+|-.|+..+|. ..++|..
T Consensus 94 eE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 94 EELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 667777777777777763 34556666667777777776663 3344443
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=3.4e-06 Score=84.94 Aligned_cols=58 Identities=14% Similarity=0.058 Sum_probs=29.3
Q ss_pred ccccccccchhhcchhh-hhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCc
Q 045877 424 KLFNFSLSLEEIENKAK-DCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRW 481 (801)
Q Consensus 424 ~L~~L~Ls~N~l~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n 481 (801)
.|++||||+..|+...- ..+..+.+|+.|.+.++++..-.-..+.+-.+|+.|+|+.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 47778888777754321 22223344444445454444444444444455555555544
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=2.6e-05 Score=78.65 Aligned_cols=133 Identities=16% Similarity=0.147 Sum_probs=89.9
Q ss_pred CCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCC
Q 045877 609 KLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVES 688 (801)
Q Consensus 609 ~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~ 688 (801)
..+.++.|||.+|.++.=.+....+.+++.|+.|+|++|.+...+.. .. ....
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--------------------------lp-~p~~ 121 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--------------------------LP-LPLK 121 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--------------------------Cc-cccc
Confidence 45678999999999875433356678999999999999998865421 11 1137
Q ss_pred CccEEEccCCCC--CCCCcccCCCCCCCccEEEeeCCcCCCCCC-----Ccc-cccceeccc-cccccccccccccCcCC
Q 045877 689 KLEKLDFQCFPD--EKLPSWVHPYSFKNLKNLYIRGGRLNSLEG-----SEW-ETVKVLRLK-YLNELKIDWKGLQELFP 759 (801)
Q Consensus 689 ~L~~L~L~~n~~--~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~-----~~f-~~L~~l~L~-~L~~L~l~~n~l~~~~p 759 (801)
+|+.|.|.|..+ ....+.+ ..+|.++.|+++.|.+..+.. ..+ +.++++++. ++..+.++-|.+...||
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l--~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp 199 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSL--DDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP 199 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhh--hcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence 899999987543 2222333 378889999999996433321 222 245555543 44444566677778899
Q ss_pred CCceeeccCCC
Q 045877 760 KLEYLEKFKCH 770 (801)
Q Consensus 760 ~L~~L~l~~c~ 770 (801)
++..+.+..||
T Consensus 200 nv~sv~v~e~P 210 (418)
T KOG2982|consen 200 NVNSVFVCEGP 210 (418)
T ss_pred cchheeeecCc
Confidence 99988888875
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.50 E-value=0.00045 Score=74.98 Aligned_cols=76 Identities=20% Similarity=0.338 Sum_probs=49.3
Q ss_pred hccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCC
Q 045877 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKL 546 (801)
Q Consensus 467 f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~l 546 (801)
+..+.+++.|++++|.++ .+|. -..+|+.|.+++|.....+|..+. .+|++|++++|..+..+
T Consensus 48 ~~~~~~l~~L~Is~c~L~------------sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE------------SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGL 110 (426)
T ss_pred HHHhcCCCEEEeCCCCCc------------ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccc
Confidence 455788888888888763 3341 123588888888766677776552 57888888887555556
Q ss_pred cccccCCCCCCEEcccCCc
Q 045877 547 PDEIGKLKSLTHLDISECF 565 (801)
Q Consensus 547 p~~~~~L~~L~~L~Ls~n~ 565 (801)
|.. |++|+++.+.
T Consensus 111 P~s------Le~L~L~~n~ 123 (426)
T PRK15386 111 PES------VRSLEIKGSA 123 (426)
T ss_pred ccc------cceEEeCCCC
Confidence 643 5555555543
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.39 E-value=7.6e-05 Score=87.63 Aligned_cols=135 Identities=24% Similarity=0.223 Sum_probs=66.8
Q ss_pred cCCceEeecCCCCCccC-chhhc-CCCCCCEEeccCCCCCC-CCcccccCCCCCCEEcccCCccccCCCcccCCCCcccc
Q 045877 506 KELRLLSLQGMSGIQEL-PSEIS-YLTSLEILDLRACYNLD-KLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582 (801)
Q Consensus 506 ~~L~~L~Ls~n~~~~~l-p~~i~-~L~~L~~L~Ls~n~~~~-~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~ 582 (801)
.+|++|+++|.+....- |..++ .|+.|+.|.+++-.+.. .+-.-..++++|..||+|++.+... .++++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 45666666664333221 22333 35666666666532221 1222334566666666666665422 45666666666
Q ss_pred cccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccC----hhhhhcccCCcEEEeeccCCC
Q 045877 583 LKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTEN----LSTVLAFKRLLQLKVSWGGGS 650 (801)
Q Consensus 583 L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~----~~~l~~l~~L~~L~L~~n~l~ 650 (801)
|.+..+.-.. ......+.+|++|+.||+|.......... .+.-..++.|+.||.+++.+.
T Consensus 200 L~mrnLe~e~--------~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFES--------YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCc--------hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 6532222111 12234556667777777766554322200 122234566777776655443
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.39 E-value=0.00034 Score=75.92 Aligned_cols=85 Identities=12% Similarity=0.199 Sum_probs=57.0
Q ss_pred hccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccC
Q 045877 443 AMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQEL 522 (801)
Q Consensus 443 ~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~l 522 (801)
+..+.++..|.+.++.+..++ . --.+|+.|.+++|.-. ..+|+.+ ..+|++|++++|..+..+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP--~--LP~sLtsL~Lsnc~nL-----------tsLP~~L--P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP--V--LPNELTEITIENCNNL-----------TTLPGSI--PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC--C--CCCCCcEEEccCCCCc-----------ccCCchh--hhhhhheEccCccccccc
Confidence 334578999999988888775 1 2236999999986431 2334444 258999999998767777
Q ss_pred chhhcCCCCCCEEeccCCCC--CCCCcccc
Q 045877 523 PSEISYLTSLEILDLRACYN--LDKLPDEI 550 (801)
Q Consensus 523 p~~i~~L~~L~~L~Ls~n~~--~~~lp~~~ 550 (801)
|. +|+.|+++++.. ++.+|.++
T Consensus 111 P~------sLe~L~L~~n~~~~L~~LPssL 134 (426)
T PRK15386 111 PE------SVRSLEIKGSATDSIKNVPNGL 134 (426)
T ss_pred cc------ccceEEeCCCCCcccccCcchH
Confidence 75 466677765432 45566543
No 56
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.31 E-value=0.00035 Score=78.39 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=7.9
Q ss_pred CCChhHHHHHHHHh
Q 045877 119 QLDHDLIYMQYALK 132 (801)
Q Consensus 119 ~l~~~~lf~~~af~ 132 (801)
.+..+|+|++.+.+
T Consensus 652 k~en~dlfakL~~~ 665 (1102)
T KOG1924|consen 652 KLENDDLFAKLALK 665 (1102)
T ss_pred hccchHHHHHHHHH
Confidence 44455577765543
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.23 E-value=0.00026 Score=83.14 Aligned_cols=136 Identities=18% Similarity=0.196 Sum_probs=92.2
Q ss_pred hhccccccccccchhh-cchhh-hhhccccCceeeecCCcccCCCC-hhhhccCCCCCEEEcCCcccCCCCCCcccccch
Q 045877 420 EKIKKLFNFSLSLEEI-ENKAK-DCAMKRGRIETLFNVSEEFPEFK-YDWFSKLEKIKVLYLGRWQSTVDDIPHIEIEST 496 (801)
Q Consensus 420 ~~l~~L~~L~Ls~N~l-~~~~~-~~~~~~~~L~~L~l~~n~i~~~~-~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 496 (801)
..-.+|++||+++.+. +.-.+ ..-.-++.|++|...+-.+..-. ...+.++++|+.||+|+++++
T Consensus 119 ~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~------------ 186 (699)
T KOG3665|consen 119 ESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS------------ 186 (699)
T ss_pred HHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc------------
Confidence 3456788899988653 33333 33346788888888775554322 345678899999999999884
Q ss_pred hhhHhhcCCcCCceEeecCCCCCc-cCchhhcCCCCCCEEeccCCCCCCCC--c----ccccCCCCCCEEcccCCcccc
Q 045877 497 DYLKGLKNMKELRLLSLQGMSGIQ-ELPSEISYLTSLEILDLRACYNLDKL--P----DEIGKLKSLTHLDISECFLLD 568 (801)
Q Consensus 497 ~lp~~l~~l~~L~~L~Ls~n~~~~-~lp~~i~~L~~L~~L~Ls~n~~~~~l--p----~~~~~L~~L~~L~Ls~n~l~~ 568 (801)
. ..++++|++|+.|.+.+-.+.. ..-..+.+|++|++||+|........ . ..-..|++|+.||.|++.+..
T Consensus 187 n-l~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 187 N-LSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred C-cHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 2 2678999999999998743322 11245788999999999975433221 1 112348899999999887654
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.23 E-value=4.9e-05 Score=68.26 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=79.4
Q ss_pred hhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhh
Q 045877 419 FEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDY 498 (801)
Q Consensus 419 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 498 (801)
+.....|+..+|++|.|...++..-...+.++++.+.+|.|..++.. |..++.||.|+++.|.+ ...
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l------------~~~ 115 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPL------------NAE 115 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCcc------------ccc
Confidence 44566788899999999988887777777899999999999998776 99999999999999999 356
Q ss_pred hHhhcCCcCCceEeecCCCCCccCchhh
Q 045877 499 LKGLKNMKELRLLSLQGMSGIQELPSEI 526 (801)
Q Consensus 499 p~~l~~l~~L~~L~Ls~n~~~~~lp~~i 526 (801)
|..+..|.+|-+|+..+| -...+|..+
T Consensus 116 p~vi~~L~~l~~Lds~~n-a~~eid~dl 142 (177)
T KOG4579|consen 116 PRVIAPLIKLDMLDSPEN-ARAEIDVDL 142 (177)
T ss_pred hHHHHHHHhHHHhcCCCC-ccccCcHHH
Confidence 888888999999999987 456666543
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.22 E-value=0.00033 Score=67.32 Aligned_cols=104 Identities=20% Similarity=0.168 Sum_probs=66.2
Q ss_pred ccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhc
Q 045877 424 KLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLK 503 (801)
Q Consensus 424 ~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~ 503 (801)
.+..+||++|++-.. ..|..+.+|.+|++.+|.|..+.+..-.-+++|.+|.|.+|.+... .-..-+.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l----------~dl~pLa 110 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL----------GDLDPLA 110 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh----------hhcchhc
Confidence 556778888887543 3455677788888888888887777766777788888888876321 1123356
Q ss_pred CCcCCceEeecCCCCCccCc---hhhcCCCCCCEEeccC
Q 045877 504 NMKELRLLSLQGMSGIQELP---SEISYLTSLEILDLRA 539 (801)
Q Consensus 504 ~l~~L~~L~Ls~n~~~~~lp---~~i~~L~~L~~L~Ls~ 539 (801)
.|++|++|.+-+|.....-- -.+..+++|++||...
T Consensus 111 ~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 67777777777763322111 1345566666666654
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.20 E-value=0.00052 Score=49.84 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=8.6
Q ss_pred hHhhcCCcCCceEeecCC
Q 045877 499 LKGLKNMKELRLLSLQGM 516 (801)
Q Consensus 499 p~~l~~l~~L~~L~Ls~n 516 (801)
|..+++|++|++|++++|
T Consensus 17 ~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 17 PPELSNLPNLETLNLSNN 34 (44)
T ss_dssp GGHGTTCTTSSEEEETSS
T ss_pred CchHhCCCCCCEEEecCC
Confidence 333444555555555544
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.19 E-value=0.00022 Score=51.81 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=33.6
Q ss_pred CCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCC
Q 045877 688 SKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLE 729 (801)
Q Consensus 688 ~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~ 729 (801)
++|++|+|++|.+..+|..+. +|++|+.|++++|+|+.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~--~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELS--NLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGT--TCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHh--CCCCCCEEEecCCCCCCCc
Confidence 479999999999999998776 9999999999999987654
No 62
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.02 E-value=0.00076 Score=75.81 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=10.4
Q ss_pred HHHHhhhccC--CCcccccee
Q 045877 232 EFKKIFQSLG--NDQSCLLCF 250 (801)
Q Consensus 232 ~L~~SYd~L~--~~K~cFl~~ 250 (801)
++.=||. +| +.|.|.|.|
T Consensus 706 IflgS~r-mpyeeik~~ILev 725 (1102)
T KOG1924|consen 706 IFLGSFR-MPYEEIKNVILEV 725 (1102)
T ss_pred HHHhhcc-CCHHHHHHHHhhc
Confidence 3334555 66 666666664
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.89 E-value=0.0012 Score=63.63 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=27.7
Q ss_pred CCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCcc
Q 045877 507 ELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFL 566 (801)
Q Consensus 507 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l 566 (801)
+...+||++|. +..++. |..+..|.+|.|++|.+...-|.--.-+++|..|.|.+|.+
T Consensus 43 ~~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred ccceecccccc-hhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 44555666552 223322 44455555666655544443333222344555555555543
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.74 E-value=0.00012 Score=77.58 Aligned_cols=90 Identities=21% Similarity=0.270 Sum_probs=49.2
Q ss_pred hhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCc-h-hhcCCCCCCEEeccCCCCC
Q 045877 466 WFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELP-S-EISYLTSLEILDLRACYNL 543 (801)
Q Consensus 466 ~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp-~-~i~~L~~L~~L~Ls~n~~~ 543 (801)
+-.++++++.|++.++.... ...+...-..+.+|++|+|..|..++..- . -...+++|.+|++++|..+
T Consensus 159 ~~~~CpnIehL~l~gc~~iT---------d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi 229 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKIT---------DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQI 229 (483)
T ss_pred HhhhCCchhhhhhhcceecc---------HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchh
Confidence 34577777777777775311 12333334567777777777765544322 1 2245677777777777443
Q ss_pred CC--CcccccCCCCCCEEcccCC
Q 045877 544 DK--LPDEIGKLKSLTHLDISEC 564 (801)
Q Consensus 544 ~~--lp~~~~~L~~L~~L~Ls~n 564 (801)
.. +-.-+.++..|+.+.+.+|
T Consensus 230 ~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 230 SGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred hcCcchHHhccchhhhhhhhccc
Confidence 32 1112334445555555554
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.45 E-value=0.0016 Score=65.46 Aligned_cols=111 Identities=21% Similarity=0.250 Sum_probs=63.3
Q ss_pred hccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCC--CCCccCchhhcCCCCCCEEeccCCCCCC
Q 045877 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGM--SGIQELPSEISYLTSLEILDLRACYNLD 544 (801)
Q Consensus 467 f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n--~~~~~lp~~i~~L~~L~~L~Ls~n~~~~ 544 (801)
+..+..|+.|++.+..++. ...+-.|++|++|.++.| +..+.++.....+++|++|+|++|++.-
T Consensus 39 ~d~~~~le~ls~~n~gltt-------------~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTT-------------LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred cccccchhhhhhhccceee-------------cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 3444555566666555532 123445677788888777 4555555555566778888887775431
Q ss_pred --CCcccccCCCCCCEEcccCCccccCCC---cccCCCCcccccccccccCC
Q 045877 545 --KLPDEIGKLKSLTHLDISECFLLDGIP---KKLSLLSKLQVLKGFVISDH 591 (801)
Q Consensus 545 --~lp~~~~~L~~L~~L~Ls~n~l~~~~p---~~~~~L~~L~~L~~~~l~~n 591 (801)
.+ ..+..+.+|..|++.+|..+.... ..|.-+++|.+|+...+..+
T Consensus 106 lstl-~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 106 LSTL-RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred cccc-chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence 11 124556667777777776543111 12455666666665554443
No 66
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=96.41 E-value=0.0025 Score=67.55 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=26.4
Q ss_pred ccCCCCCCcchhhcccCCCCCCCcceeecCcchhhHhhh
Q 045877 71 SVTNNGNCWDYVIISNNKGKISSSEQIKKNEEKDASEAD 109 (801)
Q Consensus 71 ~~~~~~~~w~~l~~~~~~~~~~s~~~vttr~~~~~~~~~ 109 (801)
+..+...+..++++.++.|.. ||++.+.|...|+
T Consensus 256 ~~~~~k~~~~AlFaqlNqGe~-----iTsgLkkVt~dmk 289 (480)
T KOG2675|consen 256 SSDANKGGRGALFAQLNQGEG-----ITSGLKKVTDDMK 289 (480)
T ss_pred CcccccccHHHHHHHHhccch-----hhhhhhhCChhhh
Confidence 334456667888888888754 8999999999888
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.29 E-value=0.0019 Score=64.85 Aligned_cols=63 Identities=22% Similarity=0.165 Sum_probs=36.5
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCC--CCCCCCcccccCCCCCCEEcccCCccc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRAC--YNLDKLPDEIGKLKSLTHLDISECFLL 567 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n--~~~~~lp~~~~~L~~L~~L~Ls~n~l~ 567 (801)
-.+..|+.|++.++.+++. ..+-.|++|+.|.++.| ...+.++.-...+++|++|++++|++.
T Consensus 40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3445566666665433221 22344667777777777 444555555555677777777777654
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.97 E-value=0.0004 Score=73.60 Aligned_cols=65 Identities=20% Similarity=0.206 Sum_probs=37.0
Q ss_pred ccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCcc--CchhhcCCCCCCEEeccCCC
Q 045877 468 SKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQE--LPSEISYLTSLEILDLRACY 541 (801)
Q Consensus 468 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~--lp~~i~~L~~L~~L~Ls~n~ 541 (801)
..|++|+.|+|..|.... ...+-.....+++|+||++++|.-+.. +-....++.+|+.+.+++|.
T Consensus 187 ~~C~~l~~l~L~~c~~iT---------~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~ 253 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSIT---------DVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL 253 (483)
T ss_pred HhcchhhhhhhcccchhH---------HHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc
Confidence 456778888887753210 112222345677788888887754433 22234556667777777663
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.47 E-value=0.025 Score=51.82 Aligned_cols=39 Identities=10% Similarity=0.097 Sum_probs=14.7
Q ss_pred hhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCc
Q 045877 442 CAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRW 481 (801)
Q Consensus 442 ~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n 481 (801)
+|....+|+.+.+. +.+..+....|.+++.|+.+.+.++
T Consensus 7 ~F~~~~~l~~i~~~-~~~~~I~~~~F~~~~~l~~i~~~~~ 45 (129)
T PF13306_consen 7 AFYNCSNLESITFP-NTIKKIGENAFSNCTSLKSINFPNN 45 (129)
T ss_dssp TTTT-TT--EEEET-ST--EE-TTTTTT-TT-SEEEESST
T ss_pred HHhCCCCCCEEEEC-CCeeEeChhhccccccccccccccc
Confidence 34444444444443 2344444455555555555555543
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.39 E-value=0.025 Score=51.75 Aligned_cols=121 Identities=9% Similarity=0.080 Sum_probs=67.3
Q ss_pred hhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchh
Q 045877 418 EFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTD 497 (801)
Q Consensus 418 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 497 (801)
.|...++|+.+.+.. .+..+...+|..+..++.+.+..+ +..+....|.+++.|+.+.+.++ +. .
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~-~~------------~ 71 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN-LK------------S 71 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST-T-------------E
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc-cc------------c
Confidence 356666777888774 688888999999989999998764 88888899999989999999763 31 1
Q ss_pred h-hHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCC
Q 045877 498 Y-LKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSL 556 (801)
Q Consensus 498 l-p~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L 556 (801)
+ ...|..+.+|+.+.+..+ +...-...+.+. +|+.+.+..+ ....-...|.++++|
T Consensus 72 i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~-~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 72 IGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN-ITKIEENAFKNCTKL 128 (129)
T ss_dssp E-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TTB--SS----GGG-----
T ss_pred cccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECCC-ccEECCccccccccC
Confidence 1 235677899999999764 332233556776 8888888753 333334455555554
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.17 E-value=0.0024 Score=73.13 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=18.7
Q ss_pred cCCccCCeeEeecccccccccChhhhhcccCCcEEEe
Q 045877 608 EKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKV 644 (801)
Q Consensus 608 ~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L 644 (801)
..+++|++|+|+++.............++++|+.|.+
T Consensus 292 ~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 292 ERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 4456677777776654322111223444555555444
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.79 E-value=0.0049 Score=62.17 Aligned_cols=36 Identities=33% Similarity=0.308 Sum_probs=16.4
Q ss_pred hhcCCcCCceEeecCCCCCccCch-----hhcCCCCCCEEe
Q 045877 501 GLKNMKELRLLSLQGMSGIQELPS-----EISYLTSLEILD 536 (801)
Q Consensus 501 ~l~~l~~L~~L~Ls~n~~~~~lp~-----~i~~L~~L~~L~ 536 (801)
.+.++++||.|.|..|...+.-+. .+.-|++|+.||
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 344555555555555444443331 233445555444
No 73
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=94.47 E-value=0.011 Score=62.20 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=0.0
Q ss_pred CCCcchhhcccCCCCCCCcceeecCcchhhHhhh
Q 045877 76 GNCWDYVIISNNKGKISSSEQIKKNEEKDASEAD 109 (801)
Q Consensus 76 ~~~w~~l~~~~~~~~~~s~~~vttr~~~~~~~~~ 109 (801)
..+...+++.++.|.. ||.+.++|...|+
T Consensus 259 ~~~~~AlFaeLN~G~~-----iT~gLkKV~~~~~ 287 (312)
T PF01213_consen 259 SGGMSALFAELNQGED-----ITKGLKKVTKDMM 287 (312)
T ss_dssp ----------------------------------
T ss_pred cccHHHHHHHHhccCc-----cccCCcccCcchh
Confidence 4567778877777654 8999999988887
No 74
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.38 E-value=0.0031 Score=63.55 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=53.3
Q ss_pred CCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCc--ccCCCCccc
Q 045877 504 NMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPK--KLSLLSKLQ 581 (801)
Q Consensus 504 ~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~--~~~~L~~L~ 581 (801)
.+.+.+.|++.||.+. .+ ....+++.|++|.|+-|.+... ..+..+++|+.|+|..|.|.. +.+ -+.++++|+
T Consensus 17 dl~~vkKLNcwg~~L~-DI-sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLD-DI-SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCcc-HH-HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhh
Confidence 3567788889887443 32 2345789999999999865543 236788889999998887542 211 245566666
Q ss_pred ccccccccCCc
Q 045877 582 VLKGFVISDHA 592 (801)
Q Consensus 582 ~L~~~~l~~n~ 592 (801)
.|. +..|.
T Consensus 92 ~LW---L~ENP 99 (388)
T KOG2123|consen 92 TLW---LDENP 99 (388)
T ss_pred hHh---hccCC
Confidence 665 55544
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.16 E-value=0.035 Score=33.56 Aligned_cols=19 Identities=42% Similarity=0.506 Sum_probs=9.7
Q ss_pred CCEEcccCCccccCCCcccC
Q 045877 556 LTHLDISECFLLDGIPKKLS 575 (801)
Q Consensus 556 L~~L~Ls~n~l~~~~p~~~~ 575 (801)
|++||+++|+++ .+|.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555544 4554443
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.70 E-value=0.048 Score=32.93 Aligned_cols=9 Identities=44% Similarity=0.648 Sum_probs=4.2
Q ss_pred CceEeecCC
Q 045877 508 LRLLSLQGM 516 (801)
Q Consensus 508 L~~L~Ls~n 516 (801)
|++|+|++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 444444444
No 77
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.22 E-value=0.11 Score=59.20 Aligned_cols=67 Identities=31% Similarity=0.261 Sum_probs=33.8
Q ss_pred hccCCCCCEEEcCCcc-cCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCc-c-CchhhcCCCCCCEEeccCCCCC
Q 045877 467 FSKLEKIKVLYLGRWQ-STVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQ-E-LPSEISYLTSLEILDLRACYNL 543 (801)
Q Consensus 467 f~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~-~-lp~~i~~L~~L~~L~Ls~n~~~ 543 (801)
...+++|+.|+|+++. ++. ..+......+++|++|.+.+|..++ . +-.....+++|++|+|++|...
T Consensus 239 ~~~~~~L~~l~l~~~~~isd----------~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 239 LSICRKLKSLDLSGCGLVTD----------IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhhcCCcCccchhhhhccCc----------hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 3455666777777665 221 1222222236667777766654221 1 1122344666777777766543
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.73 E-value=0.0072 Score=59.45 Aligned_cols=92 Identities=14% Similarity=0.089 Sum_probs=59.8
Q ss_pred CChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCC
Q 045877 462 FKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACY 541 (801)
Q Consensus 462 ~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~ 541 (801)
++-..+..++..++||++.|++. .+-..|.-+..|..|+++.| -+..+|..++.+..+..+++..|
T Consensus 33 ~~v~ei~~~kr~tvld~~s~r~v------------n~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n- 98 (326)
T KOG0473|consen 33 IPVREIASFKRVTVLDLSSNRLV------------NLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKN- 98 (326)
T ss_pred cchhhhhccceeeeehhhhhHHH------------hhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhcc-
Confidence 33334455566677777777662 33344555666777777765 45667777777777777777665
Q ss_pred CCCCCcccccCCCCCCEEcccCCccc
Q 045877 542 NLDKLPDEIGKLKSLTHLDISECFLL 567 (801)
Q Consensus 542 ~~~~lp~~~~~L~~L~~L~Ls~n~l~ 567 (801)
.....|.++++++.++++++-+|.+.
T Consensus 99 ~~~~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 99 NHSQQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred chhhCCccccccCCcchhhhccCcch
Confidence 45566777777777777777777643
No 79
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=88.88 E-value=0.3 Score=57.80 Aligned_cols=8 Identities=38% Similarity=0.459 Sum_probs=3.8
Q ss_pred EechhHHH
Q 045877 316 RMSPLVRS 323 (801)
Q Consensus 316 ~mHdlv~d 323 (801)
.||.+.|-
T Consensus 256 ~m~NL~Rl 263 (2365)
T COG5178 256 AMHNLLRL 263 (2365)
T ss_pred HHHHHHhc
Confidence 45555443
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.75 E-value=0.014 Score=65.87 Aligned_cols=44 Identities=25% Similarity=0.245 Sum_probs=24.5
Q ss_pred ccCC-ccCCeeEeecccccccc--cChhhhhcccCCcEEEeeccCCC
Q 045877 607 LEKL-EHLRKLTININSEKFQT--ENLSTVLAFKRLLQLKVSWGGGS 650 (801)
Q Consensus 607 l~~L-~~L~~L~L~~n~~~~~~--~~~~~l~~l~~L~~L~L~~n~l~ 650 (801)
+..+ ..++.++++.|.+.... .....+..+..++.|.++.|.+.
T Consensus 257 l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 257 LSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 3444 45666666666665433 11344555566666666666554
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.20 E-value=0.016 Score=57.03 Aligned_cols=63 Identities=16% Similarity=0.018 Sum_probs=46.5
Q ss_pred hccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCC
Q 045877 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYN 542 (801)
Q Consensus 467 f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~ 542 (801)
|+-++.|..||++.|.+ .-+|..++.+..++.+++..| .....|.+++.+++++++++..|.+
T Consensus 61 ~s~~t~~~rl~~sknq~------------~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQI------------KFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred hHHHHHHHHHhccHhhH------------hhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchhhhccCcc
Confidence 55566677778887776 355777777777888877765 5677788888888888888877654
No 82
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=87.59 E-value=0.34 Score=27.20 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=5.9
Q ss_pred CccEEEeeCCcCCC
Q 045877 714 NLKNLYIRGGRLNS 727 (801)
Q Consensus 714 ~L~~L~L~~n~l~~ 727 (801)
+|+.|+|++|+|+.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 45555555555543
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.45 E-value=0.18 Score=49.02 Aligned_cols=78 Identities=18% Similarity=0.219 Sum_probs=47.8
Q ss_pred CccEEEeeCCcCCCCCC---Ccccccceeccccccccccccc--cccCcCCCCceeeccCCCCCcccCCCCCcccccCCc
Q 045877 714 NLKNLYIRGGRLNSLEG---SEWETVKVLRLKYLNELKIDWK--GLQELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDL 788 (801)
Q Consensus 714 ~L~~L~L~~n~l~~~~~---~~f~~L~~l~L~~L~~L~l~~n--~l~~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L 788 (801)
.++.++-+++.|...+- ..+++++.+.+.++.+++ .|. .+.+..|+|+.|+|++|+.++.--+. .+..+++|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d-D~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~--~L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD-DWCLERLGGLAPSLQDLDLSGCPRITDGGLA--CLLKLKNL 178 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchh-hHHHHHhcccccchheeeccCCCeechhHHH--HHHHhhhh
Confidence 45677777776555443 334555666777777776 332 34467788888899888887753331 33455555
Q ss_pred ceEeCC
Q 045877 789 INLNNS 794 (801)
Q Consensus 789 ~~LdlS 794 (801)
..|.+.
T Consensus 179 r~L~l~ 184 (221)
T KOG3864|consen 179 RRLHLY 184 (221)
T ss_pred HHHHhc
Confidence 555443
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.66 E-value=0.73 Score=28.91 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=14.6
Q ss_pred CCCccEEEeeCCcCCCCCCCcc
Q 045877 712 FKNLKNLYIRGGRLNSLEGSEW 733 (801)
Q Consensus 712 l~~L~~L~L~~n~l~~~~~~~f 733 (801)
+++|+.|+|++|.|+.++...|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3567777777777777766544
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.66 E-value=0.73 Score=28.91 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=14.6
Q ss_pred CCCccEEEeeCCcCCCCCCCcc
Q 045877 712 FKNLKNLYIRGGRLNSLEGSEW 733 (801)
Q Consensus 712 l~~L~~L~L~~n~l~~~~~~~f 733 (801)
+++|+.|+|++|.|+.++...|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3567777777777777766544
No 86
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=82.64 E-value=1.2 Score=48.09 Aligned_cols=8 Identities=25% Similarity=0.480 Sum_probs=3.4
Q ss_pred cceeeeee
Q 045877 352 TFKRACLV 359 (801)
Q Consensus 352 ~~r~l~~~ 359 (801)
.|++.+++
T Consensus 379 ~Ckk~svV 386 (480)
T KOG2675|consen 379 NCKKTSVV 386 (480)
T ss_pred CCceeeEE
Confidence 34444444
No 87
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=81.69 E-value=1.9 Score=44.19 Aligned_cols=6 Identities=17% Similarity=-0.008 Sum_probs=2.7
Q ss_pred hhHhhh
Q 045877 104 DASEAD 109 (801)
Q Consensus 104 ~~~~~~ 109 (801)
+..+++
T Consensus 237 ~PnMld 242 (253)
T PF05308_consen 237 VPNMLD 242 (253)
T ss_pred CccHHH
Confidence 444443
No 88
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=78.79 E-value=1.7 Score=51.82 Aligned_cols=8 Identities=25% Similarity=0.298 Sum_probs=4.3
Q ss_pred hHHHHHHH
Q 045877 263 LLVNWWIG 270 (801)
Q Consensus 263 ~Li~~wia 270 (801)
+.++.|+-
T Consensus 224 e~v~dw~y 231 (2365)
T COG5178 224 EHVRDWVY 231 (2365)
T ss_pred HHHHHHHh
Confidence 45555554
No 89
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=78.79 E-value=0.86 Score=28.59 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=11.8
Q ss_pred cccccccccchhhcchhhhhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCA 443 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~ 443 (801)
++|+.|+|++|+|+.+++..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455566666666655555444
No 90
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=78.79 E-value=0.86 Score=28.59 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=11.8
Q ss_pred cccccccccchhhcchhhhhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCA 443 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~ 443 (801)
++|+.|+|++|+|+.+++..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455566666666655555444
No 91
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.08 E-value=0.7 Score=45.07 Aligned_cols=64 Identities=23% Similarity=0.356 Sum_probs=28.2
Q ss_pred HhhcCCcCCceEeecCCCCCccCc-hhhc-CCCCCCEEeccCCCCCCCC-cccccCCCCCCEEcccC
Q 045877 500 KGLKNMKELRLLSLQGMSGIQELP-SEIS-YLTSLEILDLRACYNLDKL-PDEIGKLKSLTHLDISE 563 (801)
Q Consensus 500 ~~l~~l~~L~~L~Ls~n~~~~~lp-~~i~-~L~~L~~L~Ls~n~~~~~l-p~~~~~L~~L~~L~Ls~ 563 (801)
+.+.+++.|+.|.+.+|...+.-- +.++ -.++|+.|+|++|..++.- -..+.++++|+.|.+.+
T Consensus 119 e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 119 EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 334445555555555543322110 1122 2355666666655443321 12344555555555543
No 92
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=75.46 E-value=0.15 Score=57.77 Aligned_cols=182 Identities=22% Similarity=0.174 Sum_probs=80.6
Q ss_pred chhhhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccC-CCCCEEEcCCcccCCCCCCcc
Q 045877 413 EQKAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKL-EKIKVLYLGRWQSTVDDIPHI 491 (801)
Q Consensus 413 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l-~~L~~L~Ls~n~l~~~~~~~~ 491 (801)
+..+..+.....|..|+++.|.+....-..... .+... ..|++|++..|.++...
T Consensus 105 ~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~--------------------~l~~~~~~l~~L~l~~c~l~~~g---- 160 (478)
T KOG4308|consen 105 EELAQALKTLPTLGQLDLSGNNLGDEGARLLCE--------------------GLRLPQCLLQTLELVSCSLTSEG---- 160 (478)
T ss_pred HHHHHHhcccccHhHhhcccCCCccHhHHHHHh--------------------hcccchHHHHHHHhhcccccccc----
Confidence 334555566667777777777765321111110 01111 22444555555544321
Q ss_pred cccchhhhHhhcCCcCCceEeecCCCCCc----cCchhh----cCCCCCCEEeccCCCCCCC----CcccccCCCC-CCE
Q 045877 492 EIESTDYLKGLKNMKELRLLSLQGMSGIQ----ELPSEI----SYLTSLEILDLRACYNLDK----LPDEIGKLKS-LTH 558 (801)
Q Consensus 492 ~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~----~lp~~i----~~L~~L~~L~Ls~n~~~~~----lp~~~~~L~~-L~~ 558 (801)
...+.+.+....+|+.++++.|.+.. .++..+ ....++++|.+.+|..... +-..+...+. +..
T Consensus 161 ---~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~e 237 (478)
T KOG4308|consen 161 ---AAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRE 237 (478)
T ss_pred ---hHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHH
Confidence 12344555555556666666554321 111222 2355566666666533211 0112233333 455
Q ss_pred EcccCCccccC----CCcccCCC-CcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeeccccccc
Q 045877 559 LDISECFLLDG----IPKKLSLL-SKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQ 626 (801)
Q Consensus 559 L~Ls~n~l~~~----~p~~~~~L-~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~ 626 (801)
|++..|.+... +...+..+ ..+++++ +..|.... .........+..+.+++.|.++.|.+...
T Consensus 238 l~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~---l~~nsi~~--~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 238 LDLASNKLGDVGVEKLLPCLSVLSETLRVLD---LSRNSITE--KGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHhcCcchHHHHHHHHHhcccchhhhhhh---hhcCCccc--cchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 66666654321 12223333 4455555 44444110 00011223455566777777777766543
No 93
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=65.57 E-value=4.4 Score=25.59 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=12.0
Q ss_pred CCccEEEccCCCCCCCCc
Q 045877 688 SKLEKLDFQCFPDEKLPS 705 (801)
Q Consensus 688 ~~L~~L~L~~n~~~~lp~ 705 (801)
.+|+.|++++|.++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 456677777776666665
No 94
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=60.57 E-value=2.8 Score=44.75 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=0.0
Q ss_pred CcchhhHhhhhccceeeCCCCChhH
Q 045877 100 NEEKDASEADQSVQVHPLNQLDHDL 124 (801)
Q Consensus 100 r~~~~~~~~~~~~~~~~l~~l~~~~ 124 (801)
+++++..+|.+-.++|..+.|=.|-
T Consensus 82 ~deELDdmM~sL~~ifRwdLLVGER 106 (386)
T PF01698_consen 82 TDEELDDMMNSLSQIFRWDLLVGER 106 (386)
T ss_dssp -------------------------
T ss_pred cHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 3344444454333555555444443
No 95
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=58.68 E-value=17 Score=40.03 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=12.6
Q ss_pred eEEechhHHHHHHHHhhc
Q 045877 314 SFRMSPLVRSAVITLAKE 331 (801)
Q Consensus 314 ~~~mHdlv~dl~~~~a~~ 331 (801)
.++-|.++|-+|..+++.
T Consensus 509 tV~KqsLlhHlc~~vVE~ 526 (817)
T KOG1925|consen 509 TVRKQSLLHHLCSLVVET 526 (817)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 556677888888776654
No 96
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=56.00 E-value=23 Score=39.28 Aligned_cols=133 Identities=20% Similarity=0.046 Sum_probs=63.5
Q ss_pred cCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCC----cccccCCCCCCEEcccCCccccCCCcccCCC---C
Q 045877 506 KELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKL----PDEIGKLKSLTHLDISECFLLDGIPKKLSLL---S 578 (801)
Q Consensus 506 ~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~l----p~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L---~ 578 (801)
+.+++++++.|....+.|-.|-.= ---|.++.|...... +..=+ =..|.+++|+.|.....+|..+..+ .
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p--~~pl~lr~c~lsskfis~l~~qsg-~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQP--GNPLSLRVCELSSKFISKLLIQSG-RLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred chhhhhccCCCcccccCCccccCC--CCccchhhhhhhhhHHHHhhhhhc-cccccccccccCCCCccchhHHHHhhhhh
Confidence 457888888875555554333210 001566666544322 11111 1258888888888777777543222 1
Q ss_pred cccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccc------cChhhhhcccCCcEEEeeccC
Q 045877 579 KLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQT------ENLSTVLAFKRLLQLKVSWGG 648 (801)
Q Consensus 579 ~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~------~~~~~l~~l~~L~~L~L~~n~ 648 (801)
-++.++ .+... .++.....+-..+.-++|...+++.|...... ..-..++.-.++ +|++..+.
T Consensus 242 vl~~ld---~s~tg---irlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~ 310 (553)
T KOG4242|consen 242 VLFKLD---RSTTG---IRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRY 310 (553)
T ss_pred hhhccc---ccccc---cchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-cccccccc
Confidence 233443 11111 00000011223345567777777777654322 112334444555 66665544
No 97
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=55.55 E-value=4.2 Score=24.85 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=13.9
Q ss_pred cccccccccchhhcchhhhhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCA 443 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~ 443 (801)
++|+.|+|++|+|+......+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 578889999998877655443
No 98
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=53.23 E-value=10 Score=23.75 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=13.7
Q ss_pred CCCCceeeccCCCCCcc
Q 045877 758 FPKLEYLEKFKCHKVTL 774 (801)
Q Consensus 758 ~p~L~~L~l~~c~~L~~ 774 (801)
+|+|++|++.+|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 36889999999988764
No 99
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=49.08 E-value=12 Score=23.68 Aligned_cols=17 Identities=18% Similarity=0.479 Sum_probs=11.8
Q ss_pred CCCccEEEeeCCcCCCC
Q 045877 712 FKNLKNLYIRGGRLNSL 728 (801)
Q Consensus 712 l~~L~~L~L~~n~l~~~ 728 (801)
+.+|+.|+|++|+|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35677788888776544
No 100
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.43 E-value=59 Score=38.26 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhCCCCCcccC
Q 045877 174 DEIRRISQKFLNLKSKIPPVNSS 196 (801)
Q Consensus 174 ~~~~~~~~~i~~kc~GlPlai~~ 196 (801)
++...+..+++.+.-|.+++|..
T Consensus 519 ~~~r~~i~~~l~~~~g~~~~v~c 541 (585)
T PRK14950 519 PENRKITEELLSNFVGKTCAVRC 541 (585)
T ss_pred hHHHHHHHHHHHHHhCCceEEEE
Confidence 56788899999999999999844
No 101
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=41.89 E-value=40 Score=36.33 Aligned_cols=106 Identities=10% Similarity=0.061 Sum_probs=53.4
Q ss_pred HHHHHHHHHhCCCCCcccCCCCCchhHHhhhccCCCCCCCCccccccccchhHHHHHHhhhccC-CCccccc-eecccCC
Q 045877 178 RISQKFLNLKSKIPPVNSSSSDDSDAQQRRRINQSKDLPNMADKTRFKEHDFFIEFKKIFQSLG-NDQSCLL-CFAVFPE 255 (801)
Q Consensus 178 ~~~~~i~~kc~GlPlai~~~l~~~~~~~W~~~l~~~~~~~~~~~~~~~~~~i~~~L~~SYd~L~-~~K~cFl-~~a~Fp~ 255 (801)
+....|++.|+|.|-.+...+. ....|..+.....+. .+.. ...+..+...|..|+ ..+.-+. ....|..
T Consensus 203 ~~~~~ia~~~~G~pR~a~~~l~--~~~~~a~~~~~~~I~-~~~v-----~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~ 274 (328)
T PRK00080 203 EGALEIARRSRGTPRIANRLLR--RVRDFAQVKGDGVIT-KEIA-----DKALDMLGVDELGLDEMDRKYLRTIIEKFGG 274 (328)
T ss_pred HHHHHHHHHcCCCchHHHHHHH--HHHHHHHHcCCCCCC-HHHH-----HHHHHHhCCCcCCCCHHHHHHHHHHHHHcCC
Confidence 3578899999999976533332 233333221111111 1111 124445556677787 5555443 4555655
Q ss_pred CceechhhHHHHHHHcCCCcccccCCCChHHHHHHHHH-HHHhcCcccccc
Q 045877 256 NAVIKKRLLVNWWIGEGFLKERIQGENSAEKAADKLLR-EFEEKGFILPVD 305 (801)
Q Consensus 256 ~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~~~~~~-~L~~r~ll~~~~ 305 (801)
+ .+..+.+. ..+... .+.++..++ .|++.+||+...
T Consensus 275 ~-~~~~~~~a------~~lg~~-------~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 275 G-PVGLDTLA------AALGEE-------RDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred C-ceeHHHHH------HHHCCC-------cchHHHHhhHHHHHcCCcccCC
Confidence 4 24433332 222222 234455555 788999987443
No 102
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=39.72 E-value=21 Score=22.82 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=9.5
Q ss_pred CCCCEEEcCCccc
Q 045877 471 EKIKVLYLGRWQS 483 (801)
Q Consensus 471 ~~L~~L~Ls~n~l 483 (801)
++|++|||++|.+
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 4577778887776
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=37.87 E-value=44 Score=41.64 Aligned_cols=81 Identities=19% Similarity=0.263 Sum_probs=53.6
Q ss_pred hHHHHHHh-hhccC-CCccccceecccCCCceechhhHHHHHHHcCCCcccccCCCChHHHHHHHHHHHHhcCccccccc
Q 045877 229 FFIEFKKI-FQSLG-NDQSCLLCFAVFPENAVIKKRLLVNWWIGEGFLKERIQGENSAEKAADKLLREFEEKGFILPVDK 306 (801)
Q Consensus 229 i~~~L~~S-Yd~L~-~~K~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~~~~~~~L~~r~ll~~~~~ 306 (801)
+...|.-. |+.|| +.+..++..|+++ .++. ++.. .+... +.+...+.+|.+++++....+
T Consensus 251 ~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~-~l~~-----~l~~~---------~~~~~~L~~l~~~~l~~~~~~ 312 (903)
T PRK04841 251 LSDYLVEEVLDNVDLETRHFLLRCSVLR---SMND-ALIV-----RVTGE---------ENGQMRLEELERQGLFIQRMD 312 (903)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCH-HHHH-----HHcCC---------CcHHHHHHHHHHCCCeeEeec
Confidence 55554433 88999 9999999999986 3332 2222 11111 124678999999999764322
Q ss_pred ccCCccceEEechhHHHHHHHHhh
Q 045877 307 KHRGVANSFRMSPLVRSAVITLAK 330 (801)
Q Consensus 307 ~~~~~~~~~~mHdlv~dl~~~~a~ 330 (801)
+ .+ .+|+.|++++++.+....
T Consensus 313 ~-~~--~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 313 D-SG--EWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred C-CC--CEEehhHHHHHHHHHHHH
Confidence 1 11 268899999999987764
No 104
>PF14162 YozD: YozD-like protein
Probab=35.87 E-value=41 Score=24.85 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=19.6
Q ss_pred HHHcCCCcccccCCCChHHHHHHHHHHHHhcCcccc
Q 045877 268 WIGEGFLKERIQGENSAEKAADKLLREFEEKGFILP 303 (801)
Q Consensus 268 wia~g~i~~~~~~~~~~~~~~~~~~~~L~~r~ll~~ 303 (801)
.+..||++.. +..++.|.--|+-|+.+|+|-.
T Consensus 21 L~kRGyvP~e----~El~eiADItFeYll~K~iIdE 52 (57)
T PF14162_consen 21 LVKRGYVPTE----EELEEIADITFEYLLEKCIIDE 52 (57)
T ss_pred HHHccCCCcH----HHHHHHHHHHHHHHHHHHhhhh
Confidence 3445666654 5566666666666776666643
No 105
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.94 E-value=70 Score=33.87 Aligned_cols=12 Identities=25% Similarity=0.116 Sum_probs=5.5
Q ss_pred HHHHHHhcCccc
Q 045877 291 LLREFEEKGFIL 302 (801)
Q Consensus 291 ~~~~L~~r~ll~ 302 (801)
++++=..+|-|.
T Consensus 321 ~L~~~~r~G~i~ 332 (365)
T KOG2391|consen 321 SLGKSLRDGVID 332 (365)
T ss_pred HHHHHHhcCeee
Confidence 444444444443
No 106
>PRK15313 autotransport protein MisL; Provisional
Probab=33.51 E-value=40 Score=40.80 Aligned_cols=6 Identities=17% Similarity=-0.152 Sum_probs=2.6
Q ss_pred HHhhhc
Q 045877 204 QQRRRI 209 (801)
Q Consensus 204 ~~W~~~ 209 (801)
..|.++
T Consensus 678 s~WlR~ 683 (955)
T PRK15313 678 SLWMRN 683 (955)
T ss_pred ceEEEe
Confidence 345443
No 107
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=33.33 E-value=75 Score=33.70 Aligned_cols=103 Identities=13% Similarity=0.064 Sum_probs=51.2
Q ss_pred HHHHHHHHhCCCCCcccCCCCCchhHHhhhc--cCCCCCCCCccccccccchhHHHHHHhhhccC-CCccccc-eecccC
Q 045877 179 ISQKFLNLKSKIPPVNSSSSDDSDAQQRRRI--NQSKDLPNMADKTRFKEHDFFIEFKKIFQSLG-NDQSCLL-CFAVFP 254 (801)
Q Consensus 179 ~~~~i~~kc~GlPlai~~~l~~~~~~~W~~~--l~~~~~~~~~~~~~~~~~~i~~~L~~SYd~L~-~~K~cFl-~~a~Fp 254 (801)
....|++.|+|.|-.+...+. ..|..+ .+...+ ..+.. ..+...+...|++|+ +.+.-+. .++.+.
T Consensus 183 al~~ia~~~~G~pR~~~~ll~----~~~~~a~~~~~~~i-t~~~v-----~~~l~~l~~~~~~l~~~~~~~L~al~~~~~ 252 (305)
T TIGR00635 183 AALEIARRSRGTPRIANRLLR----RVRDFAQVRGQKII-NRDIA-----LKALEMLMIDELGLDEIDRKLLSVLIEQFQ 252 (305)
T ss_pred HHHHHHHHhCCCcchHHHHHH----HHHHHHHHcCCCCc-CHHHH-----HHHHHHhCCCCCCCCHHHHHHHHHHHHHhC
Confidence 457789999999976532221 234322 111111 11111 123344556777788 6555443 334454
Q ss_pred CCceechhhHHHHHHHcCCCcccccCCCChHHHHHHHHH-HHHhcCcccccc
Q 045877 255 ENAVIKKRLLVNWWIGEGFLKERIQGENSAEKAADKLLR-EFEEKGFILPVD 305 (801)
Q Consensus 255 ~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~~~~~~-~L~~r~ll~~~~ 305 (801)
.+ .+..+++.. .+... ...++..++ .|++++||+...
T Consensus 253 ~~-~~~~~~ia~------~lg~~-------~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 253 GG-PVGLKTLAA------ALGED-------ADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred CC-cccHHHHHH------HhCCC-------cchHHHhhhHHHHHcCCcccCC
Confidence 32 333333222 22111 234666777 699999997443
No 108
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=33.08 E-value=64 Score=34.36 Aligned_cols=10 Identities=20% Similarity=0.142 Sum_probs=4.4
Q ss_pred CcchhhHhhh
Q 045877 100 NEEKDASEAD 109 (801)
Q Consensus 100 r~~~~~~~~~ 109 (801)
...+|...|+
T Consensus 258 NEvDMS~lm~ 267 (457)
T KOG0559|consen 258 NEVDMSNLME 267 (457)
T ss_pred hhhhHHHHHH
Confidence 3444544443
No 109
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=31.90 E-value=94 Score=35.13 Aligned_cols=10 Identities=10% Similarity=0.232 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 045877 176 IRRISQKFLN 185 (801)
Q Consensus 176 ~~~~~~~i~~ 185 (801)
|.++.+.|++
T Consensus 350 L~~vL~~ia~ 359 (582)
T PF03276_consen 350 LADVLRGIAN 359 (582)
T ss_pred HHHHHHHHhh
Confidence 3333444444
No 110
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=31.28 E-value=16 Score=39.26 Aligned_cols=7 Identities=0% Similarity=-0.087 Sum_probs=0.0
Q ss_pred Ccchhhc
Q 045877 78 CWDYVII 84 (801)
Q Consensus 78 ~w~~l~~ 84 (801)
..+.++.
T Consensus 50 ~LEdLF~ 56 (386)
T PF01698_consen 50 GLEDLFQ 56 (386)
T ss_dssp -------
T ss_pred hHHHHHh
Confidence 3444443
No 111
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=28.80 E-value=24 Score=39.95 Aligned_cols=74 Identities=24% Similarity=0.248 Sum_probs=39.5
Q ss_pred CCccEEEccCCCCCCCCcc--cCCCCCCCccEEEeeCC--cCCCCCCCcccccceecccccccccccccccc--------
Q 045877 688 SKLEKLDFQCFPDEKLPSW--VHPYSFKNLKNLYIRGG--RLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ-------- 755 (801)
Q Consensus 688 ~~L~~L~L~~n~~~~lp~~--l~~~~l~~L~~L~L~~n--~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~-------- 755 (801)
+.+..++|++|++..+... +. ...|+|+.|+|++| .+..... +++ +...-|++|-+.+|.+.
T Consensus 218 p~i~sl~lsnNrL~~Ld~~ssls-q~apklk~L~LS~N~~~~~~~~e--l~K---~k~l~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLS-QIAPKLKTLDLSHNHSKISSESE--LDK---LKGLPLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred cceeeeecccchhhchhhhhHHH-Hhcchhheeecccchhhhcchhh--hhh---hcCCCHHHeeecCCccccchhhhHH
Confidence 4667777777765444321 11 25577888888887 3332211 222 22334455556666553
Q ss_pred ------CcCCCCceeecc
Q 045877 756 ------ELFPKLEYLEKF 767 (801)
Q Consensus 756 ------~~~p~L~~L~l~ 767 (801)
..||+|..|+=.
T Consensus 292 yv~~i~~~FPKL~~LDG~ 309 (585)
T KOG3763|consen 292 YVSAIRELFPKLLRLDGV 309 (585)
T ss_pred HHHHHHHhcchheeecCc
Confidence 457777766533
No 112
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=27.91 E-value=1.1e+02 Score=34.59 Aligned_cols=8 Identities=0% Similarity=-0.031 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q 045877 288 ADKLLREF 295 (801)
Q Consensus 288 ~~~~~~~L 295 (801)
|-.|++-+
T Consensus 474 Gl~YynKM 481 (574)
T PF07462_consen 474 GLAYYNKM 481 (574)
T ss_pred HHHHHHHH
Confidence 44455444
No 113
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=25.98 E-value=2.1e+02 Score=35.35 Aligned_cols=12 Identities=0% Similarity=-0.119 Sum_probs=5.3
Q ss_pred HHHHHHhCCCCC
Q 045877 181 QKFLNLKSKIPP 192 (801)
Q Consensus 181 ~~i~~kc~GlPl 192 (801)
+++++|...--|
T Consensus 247 ~dLV~KAR~gKL 258 (1228)
T PRK12270 247 EDIVRRARDGKL 258 (1228)
T ss_pred HHHHHHHHcCCC
Confidence 444454444333
No 114
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.34 E-value=1.3e+02 Score=35.55 Aligned_cols=17 Identities=12% Similarity=0.059 Sum_probs=10.8
Q ss_pred hhHHHHHHhhhccC-CCc
Q 045877 228 DFFIEFKKIFQSLG-NDQ 244 (801)
Q Consensus 228 ~i~~~L~~SYd~L~-~~K 244 (801)
+++..++..++++| .++
T Consensus 560 ~~l~~~~~~~~~~~~~~~ 577 (620)
T PRK14954 560 ALLSKEIESFYGIPLKLQ 577 (620)
T ss_pred HHHHHHHHHHhcCCceEE
Confidence 46677777777666 543
No 115
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=22.65 E-value=1.4e+02 Score=25.13 Aligned_cols=39 Identities=28% Similarity=0.487 Sum_probs=30.5
Q ss_pred hhhHHHHHHHcCCCcccccCCCChHHHHHHHHHHHHhcCcccccccc
Q 045877 261 KRLLVNWWIGEGFLKERIQGENSAEKAADKLLREFEEKGFILPVDKK 307 (801)
Q Consensus 261 ~~~Li~~wia~g~i~~~~~~~~~~~~~~~~~~~~L~~r~ll~~~~~~ 307 (801)
-.++|++.+..|.+.. ++.|..+.+.|++.++|..+..+
T Consensus 35 GsElVdWL~~~~~~~s--------R~eAv~lgq~Ll~~gii~HV~~~ 73 (85)
T cd04441 35 GSEFIDWLLQEGEAES--------RREAVQLCRRLLEHGIIQHVSNK 73 (85)
T ss_pred chHHHHHHHHcCCCCC--------HHHHHHHHHHHHHCCCEEecCCC
Confidence 3578888887775433 47789999999999999988754
No 116
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.14 E-value=2.7e+02 Score=32.21 Aligned_cols=6 Identities=17% Similarity=0.434 Sum_probs=2.6
Q ss_pred cchhhc
Q 045877 79 WDYVII 84 (801)
Q Consensus 79 w~~l~~ 84 (801)
|.....
T Consensus 134 ~~~~~~ 139 (922)
T KOG2677|consen 134 WAQFKR 139 (922)
T ss_pred cccccc
Confidence 444443
No 117
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=20.21 E-value=1.2e+02 Score=37.56 Aligned_cols=8 Identities=0% Similarity=0.052 Sum_probs=3.9
Q ss_pred HHHHHHHh
Q 045877 125 IYMQYALK 132 (801)
Q Consensus 125 lf~~~af~ 132 (801)
+|..+.+.
T Consensus 435 lf~~~~~~ 442 (833)
T KOG1922|consen 435 LFGLVKFL 442 (833)
T ss_pred chhhhhcc
Confidence 55544444
Done!