Query 045877
Match_columns 801
No_of_seqs 594 out of 4274
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 10:55:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eco_A Uncharacterized protein 100.0 5.1E-31 1.7E-35 310.4 17.4 342 415-799 198-600 (636)
2 4eco_A Uncharacterized protein 100.0 1.3E-30 4.3E-35 307.1 19.1 328 439-799 198-579 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 1.5E-30 5E-35 312.3 19.0 312 464-799 441-819 (876)
4 4ecn_A Leucine-rich repeat pro 100.0 4.6E-30 1.6E-34 307.9 21.8 321 439-799 440-840 (876)
5 3rgz_A Protein brassinosteroid 100.0 1.4E-30 4.8E-35 313.6 17.3 228 416-655 311-556 (768)
6 3rgz_A Protein brassinosteroid 100.0 2.1E-30 7.1E-35 312.2 16.4 222 421-654 267-507 (768)
7 2z81_A CD282 antigen, TOLL-lik 100.0 2E-29 6.9E-34 292.2 21.7 350 423-799 26-510 (549)
8 3v47_A TOLL-like receptor 5B a 100.0 2.4E-29 8.3E-34 284.5 21.1 345 423-800 30-409 (455)
9 3t6q_A CD180 antigen; protein- 100.0 9.4E-29 3.2E-33 290.2 23.6 346 416-799 50-513 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-28 3.9E-33 289.5 20.8 342 417-799 50-558 (606)
11 3t6q_A CD180 antigen; protein- 100.0 8.8E-28 3E-32 281.9 24.3 359 416-800 74-537 (606)
12 2z7x_B TOLL-like receptor 1, v 100.0 8.3E-28 2.8E-32 276.8 21.3 137 423-576 21-162 (520)
13 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-27 4E-32 278.2 21.8 339 423-799 52-510 (562)
14 2id5_A Lingo-1, leucine rich r 100.0 1.2E-27 4E-32 272.4 20.8 277 423-755 32-309 (477)
15 3j0a_A TOLL-like receptor 5; m 100.0 1.8E-27 6.2E-32 289.4 23.2 315 422-769 23-391 (844)
16 3j0a_A TOLL-like receptor 5; m 100.0 3.7E-27 1.3E-31 286.8 24.6 261 418-703 43-377 (844)
17 2z63_A TOLL-like receptor 4, v 99.9 6.5E-28 2.2E-32 280.8 16.5 148 416-574 45-197 (570)
18 4fmz_A Internalin; leucine ric 99.9 1.5E-26 5.1E-31 251.9 25.8 303 416-799 37-346 (347)
19 1ziw_A TOLL-like receptor 3; i 99.9 7.9E-27 2.7E-31 277.6 24.4 284 416-725 42-365 (680)
20 3o6n_A APL1; leucine-rich repe 99.9 4.3E-27 1.5E-31 260.5 20.4 302 421-799 43-352 (390)
21 3vq2_A TLR4, TOLL-like recepto 99.9 5.4E-27 1.8E-31 275.2 21.7 347 423-799 32-437 (606)
22 2id5_A Lingo-1, leucine rich r 99.9 2.1E-27 7.2E-32 270.3 17.7 286 416-757 49-335 (477)
23 3bz5_A Internalin-J, INLJ; leu 99.9 3.9E-26 1.3E-30 257.5 27.8 307 415-799 34-352 (457)
24 3v47_A TOLL-like receptor 5B a 99.9 1.8E-27 6.3E-32 269.1 14.7 319 416-763 47-416 (455)
25 3oja_B Anopheles plasmodium-re 99.9 9.7E-27 3.3E-31 272.2 20.4 303 421-799 49-358 (597)
26 2z7x_B TOLL-like receptor 1, v 99.9 7.8E-27 2.7E-31 268.7 19.2 144 426-592 3-149 (520)
27 2z81_A CD282 antigen, TOLL-lik 99.9 5.1E-27 1.7E-31 272.1 17.3 315 416-769 43-507 (549)
28 1ziw_A TOLL-like receptor 3; i 99.9 3.4E-26 1.2E-30 272.2 24.5 353 416-799 66-517 (680)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.6E-26 1.2E-30 265.6 23.8 342 425-799 33-486 (562)
30 1o6v_A Internalin A; bacterial 99.9 7.2E-26 2.5E-30 256.8 25.4 322 416-799 61-388 (466)
31 2z63_A TOLL-like receptor 4, v 99.9 5.4E-27 1.8E-31 273.0 16.1 147 423-580 28-175 (570)
32 1xku_A Decorin; proteoglycan, 99.9 1.4E-25 4.9E-30 242.4 24.0 299 422-797 30-330 (330)
33 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-25 3.6E-30 243.7 22.4 297 423-797 33-331 (332)
34 3bz5_A Internalin-J, INLJ; leu 99.9 1.9E-25 6.4E-30 251.9 25.3 291 435-800 30-332 (457)
35 3o6n_A APL1; leucine-rich repe 99.9 9.7E-26 3.3E-30 249.7 21.1 282 445-799 43-331 (390)
36 4fmz_A Internalin; leucine ric 99.9 2.7E-25 9.3E-30 241.9 22.3 296 407-782 50-345 (347)
37 3oja_B Anopheles plasmodium-re 99.9 1.5E-25 5E-30 262.2 21.3 283 445-799 49-337 (597)
38 1o6v_A Internalin A; bacterial 99.9 4.7E-25 1.6E-29 250.1 24.1 321 418-800 41-367 (466)
39 4g8a_A TOLL-like receptor 4; l 99.9 2.5E-25 8.6E-30 262.0 22.0 140 424-574 53-193 (635)
40 1ogq_A PGIP-2, polygalacturona 99.9 1.6E-25 5.6E-30 240.0 14.2 247 447-753 50-302 (313)
41 1jl5_A Outer protein YOPM; leu 99.9 1.9E-24 6.4E-29 243.6 23.2 248 415-703 26-292 (454)
42 1ogq_A PGIP-2, polygalacturona 99.9 6.8E-26 2.3E-30 242.9 9.5 253 423-729 50-308 (313)
43 1jl5_A Outer protein YOPM; leu 99.9 5.4E-24 1.9E-28 239.8 19.2 259 421-739 9-282 (454)
44 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-23 3.9E-28 227.7 20.6 267 423-752 54-330 (332)
45 1xku_A Decorin; proteoglycan, 99.9 2.7E-23 9.2E-28 224.5 22.4 268 423-752 52-329 (330)
46 2z80_A TOLL-like receptor 2, v 99.9 4E-24 1.4E-28 233.3 12.7 272 428-728 36-316 (353)
47 4g8a_A TOLL-like receptor 4; l 99.9 3.2E-23 1.1E-27 244.0 20.9 348 416-799 69-580 (635)
48 4fcg_A Uncharacterized protein 99.9 7.8E-23 2.7E-27 220.5 16.2 178 447-651 81-267 (328)
49 2z66_A Variable lymphocyte rec 99.9 8E-23 2.7E-27 218.3 15.8 252 427-730 11-265 (306)
50 2z80_A TOLL-like receptor 2, v 99.9 2.3E-23 7.9E-28 227.3 11.4 231 423-702 52-315 (353)
51 4fcg_A Uncharacterized protein 99.9 1.3E-22 4.5E-27 218.7 17.0 209 469-733 79-297 (328)
52 2a5y_B CED-4; apoptosis; HET: 99.9 1.6E-24 5.5E-29 249.9 -0.4 188 91-334 264-473 (549)
53 3zyj_A Leucine-rich repeat-con 99.9 5.7E-22 1.9E-26 223.0 19.6 245 427-726 47-292 (440)
54 3zyi_A Leucine-rich repeat-con 99.9 6.7E-22 2.3E-26 223.2 19.5 246 428-728 59-305 (452)
55 1wwl_A Monocyte differentiatio 99.9 3.6E-23 1.2E-27 221.7 8.5 253 419-755 39-309 (312)
56 2z66_A Variable lymphocyte rec 99.9 3.9E-22 1.3E-26 212.9 13.4 230 423-702 28-262 (306)
57 1ozn_A Reticulon 4 receptor; N 99.9 2E-21 6.7E-26 205.3 18.6 226 450-730 14-242 (285)
58 3zyj_A Leucine-rich repeat-con 99.9 3.2E-21 1.1E-25 216.8 20.0 248 448-755 44-292 (440)
59 1wwl_A Monocyte differentiatio 99.9 1.1E-22 3.8E-27 217.9 7.6 206 504-783 93-309 (312)
60 1z7x_W Ribonuclease inhibitor; 99.9 3.7E-24 1.3E-28 242.3 -5.2 335 419-799 24-411 (461)
61 3o53_A Protein LRIM1, AGAP0063 99.9 3E-22 1E-26 215.0 9.7 258 423-750 10-270 (317)
62 3zyi_A Leucine-rich repeat-con 99.9 2.6E-21 8.9E-26 218.4 17.7 207 423-654 75-283 (452)
63 1ozn_A Reticulon 4 receptor; N 99.9 4.1E-21 1.4E-25 202.8 16.0 208 422-652 31-240 (285)
64 3g06_A SSPH2 (leucine-rich rep 99.9 3.8E-20 1.3E-24 215.0 24.8 219 423-730 40-258 (622)
65 3o53_A Protein LRIM1, AGAP0063 99.8 4.7E-22 1.6E-26 213.5 4.4 249 417-730 28-280 (317)
66 1z7x_W Ribonuclease inhibitor; 99.8 4.5E-23 1.5E-27 233.4 -4.1 318 416-769 49-408 (461)
67 3g06_A SSPH2 (leucine-rich rep 99.8 8.2E-20 2.8E-24 212.2 22.6 255 447-799 40-297 (622)
68 2z62_A TOLL-like receptor 4, v 99.8 1E-19 3.5E-24 191.1 19.7 209 471-729 28-240 (276)
69 2z62_A TOLL-like receptor 4, v 99.8 1.6E-20 5.5E-25 197.3 13.0 211 423-653 28-240 (276)
70 3oja_A Leucine-rich immune mol 99.8 3.6E-21 1.2E-25 218.9 7.1 214 448-726 35-250 (487)
71 2o6q_A Variable lymphocyte rec 99.8 4E-19 1.4E-23 186.0 17.7 203 424-652 17-220 (270)
72 3oja_A Leucine-rich immune mol 99.8 1E-19 3.6E-24 206.8 14.2 236 421-721 32-270 (487)
73 1p9a_G Platelet glycoprotein I 99.8 4E-19 1.4E-23 187.9 14.3 203 419-651 6-209 (290)
74 1p9a_G Platelet glycoprotein I 99.8 1.5E-18 5E-23 183.6 18.4 204 467-728 6-210 (290)
75 2o6q_A Variable lymphocyte rec 99.8 4.1E-18 1.4E-22 178.3 20.0 184 506-729 37-221 (270)
76 3ogk_B Coronatine-insensitive 99.8 5.6E-20 1.9E-24 214.8 6.1 210 419-651 160-392 (592)
77 3rfs_A Internalin B, repeat mo 99.8 2.5E-18 8.5E-23 180.1 17.3 202 422-652 18-220 (272)
78 4glp_A Monocyte differentiatio 99.8 9.5E-19 3.3E-23 187.0 13.2 233 472-755 65-307 (310)
79 1h6u_A Internalin H; cell adhe 99.8 3.4E-18 1.2E-22 182.4 16.7 199 416-652 34-232 (308)
80 4glp_A Monocyte differentiatio 99.8 1.3E-18 4.5E-23 185.9 12.6 202 470-727 90-308 (310)
81 2ca6_A RAN GTPase-activating p 99.8 6.3E-20 2.1E-24 202.6 2.2 255 446-730 31-320 (386)
82 3rfs_A Internalin B, repeat mo 99.8 2.3E-18 7.9E-23 180.4 13.9 208 416-657 34-242 (272)
83 2ast_B S-phase kinase-associat 99.8 1.6E-19 5.5E-24 195.2 4.2 202 425-648 49-258 (336)
84 3ogk_B Coronatine-insensitive 99.8 1.8E-19 6.2E-24 210.4 4.4 349 420-799 109-526 (592)
85 2xwt_C Thyrotropin receptor; s 99.8 4.3E-18 1.5E-22 174.6 14.0 198 471-742 31-234 (239)
86 3goz_A Leucine-rich repeat-con 99.8 3E-19 1E-23 195.4 5.5 261 427-729 2-300 (362)
87 2xwt_C Thyrotropin receptor; s 99.7 3.9E-18 1.3E-22 174.9 12.5 181 448-653 32-221 (239)
88 1h6u_A Internalin H; cell adhe 99.7 7.8E-18 2.7E-22 179.7 15.3 197 468-730 38-234 (308)
89 3goz_A Leucine-rich repeat-con 99.7 4.3E-19 1.5E-23 194.1 5.0 268 452-755 3-297 (362)
90 2ast_B S-phase kinase-associat 99.7 8.5E-19 2.9E-23 189.5 4.0 250 447-760 47-311 (336)
91 3m19_A Variable lymphocyte rec 99.7 3.2E-17 1.1E-21 169.5 15.7 146 425-584 16-161 (251)
92 3m19_A Variable lymphocyte rec 99.7 6.4E-17 2.2E-21 167.2 17.1 180 447-652 14-194 (251)
93 2ca6_A RAN GTPase-activating p 99.7 2.6E-18 8.8E-23 189.6 6.2 273 415-722 24-339 (386)
94 4ay9_X Follicle-stimulating ho 99.7 6.3E-17 2.1E-21 176.0 16.5 215 474-744 12-233 (350)
95 3sfz_A APAF-1, apoptotic pepti 99.7 5.9E-18 2E-22 214.9 5.5 187 90-332 255-452 (1249)
96 1h6t_A Internalin B; cell adhe 99.7 1.9E-16 6.4E-21 167.4 13.9 175 417-625 40-214 (291)
97 3cvr_A Invasion plasmid antige 99.7 5.9E-17 2E-21 185.9 10.6 194 472-736 60-253 (571)
98 4ay9_X Follicle-stimulating ho 99.7 2.3E-16 7.9E-21 171.5 14.8 238 427-723 13-256 (350)
99 2p1m_B Transport inhibitor res 99.7 8.3E-18 2.8E-22 196.4 1.9 112 421-540 128-245 (594)
100 2o6s_A Variable lymphocyte rec 99.7 2.8E-16 9.7E-21 157.4 12.0 178 428-637 12-189 (208)
101 1h6t_A Internalin B; cell adhe 99.7 4.9E-16 1.7E-20 164.2 14.3 194 421-652 22-215 (291)
102 2p1m_B Transport inhibitor res 99.7 3.8E-18 1.3E-22 199.3 -2.6 353 419-798 101-518 (594)
103 1m9s_A Internalin B; cell inva 99.6 8.4E-16 2.9E-20 178.2 14.0 178 416-627 36-213 (605)
104 3cvr_A Invasion plasmid antige 99.6 1E-15 3.4E-20 175.7 14.4 185 418-652 49-245 (571)
105 1m9s_A Internalin B; cell inva 99.6 1.4E-15 4.7E-20 176.4 14.1 196 420-653 18-213 (605)
106 1vt4_I APAF-1 related killer D 99.6 1.7E-16 5.7E-21 186.4 4.7 156 91-325 264-436 (1221)
107 4ezg_A Putative uncharacterize 99.6 1.6E-15 5.5E-20 150.5 11.2 155 468-651 41-195 (197)
108 4ezg_A Putative uncharacterize 99.6 1.6E-15 5.3E-20 150.6 10.9 151 448-625 45-195 (197)
109 2o6s_A Variable lymphocyte rec 99.6 3E-15 1E-19 149.8 11.8 164 422-612 27-190 (208)
110 1dce_A Protein (RAB geranylger 99.6 1.6E-16 5.4E-21 183.2 2.6 207 418-644 344-567 (567)
111 2v70_A SLIT-2, SLIT homolog 2 99.6 3.7E-15 1.3E-19 150.6 11.6 144 427-584 15-159 (220)
112 2v9t_B SLIT homolog 2 protein 99.6 4.1E-15 1.4E-19 150.3 11.8 144 427-584 15-158 (220)
113 3e6j_A Variable lymphocyte rec 99.6 1.1E-14 3.7E-19 148.2 13.7 119 451-584 23-141 (229)
114 2xot_A Amphoterin-induced prot 99.6 5.9E-15 2E-19 161.0 12.0 178 427-650 22-202 (361)
115 1xeu_A Internalin C; cellular 99.6 7.9E-15 2.7E-19 152.5 12.2 169 421-624 17-185 (263)
116 2v9t_B SLIT homolog 2 protein 99.6 9.5E-15 3.2E-19 147.6 11.1 134 423-567 32-165 (220)
117 3e6j_A Variable lymphocyte rec 99.6 1.8E-14 6.3E-19 146.5 13.0 149 426-592 22-170 (229)
118 2v70_A SLIT-2, SLIT homolog 2 99.6 1.2E-14 4.2E-19 146.8 11.5 135 424-569 33-168 (220)
119 2xot_A Amphoterin-induced prot 99.5 6.9E-15 2.4E-19 160.5 9.6 155 423-592 39-200 (361)
120 1xeu_A Internalin C; cellular 99.5 7.4E-15 2.5E-19 152.7 9.3 171 445-652 17-187 (263)
121 4b8c_D Glucose-repressible alc 99.5 5.8E-15 2E-19 175.5 5.7 112 463-592 216-327 (727)
122 1dce_A Protein (RAB geranylger 99.5 6.4E-15 2.2E-19 169.8 5.3 180 413-618 362-567 (567)
123 1z6t_A APAF-1, apoptotic prote 99.5 1.2E-14 4E-19 169.7 6.6 185 90-330 255-450 (591)
124 4b8c_D Glucose-repressible alc 99.5 7.9E-15 2.7E-19 174.3 4.8 189 429-650 207-404 (727)
125 1w8a_A SLIT protein; signaling 99.5 1.5E-13 5.2E-18 135.5 10.0 130 426-569 11-141 (192)
126 2ell_A Acidic leucine-rich nuc 99.4 2.7E-13 9.3E-18 130.5 8.8 140 468-651 21-161 (168)
127 2ell_A Acidic leucine-rich nuc 99.4 2.7E-13 9.4E-18 130.5 8.8 129 423-565 24-158 (168)
128 2je0_A Acidic leucine-rich nuc 99.4 2.5E-13 8.4E-18 128.0 8.1 106 466-584 37-146 (149)
129 1w8a_A SLIT protein; signaling 99.4 4.5E-13 1.5E-17 132.2 8.7 126 450-592 11-137 (192)
130 2je0_A Acidic leucine-rich nuc 99.4 4.1E-13 1.4E-17 126.5 7.0 132 470-645 16-148 (149)
131 2o6r_A Variable lymphocyte rec 99.4 2E-12 6.7E-17 125.6 11.4 131 426-570 10-140 (177)
132 2wfh_A SLIT homolog 2 protein 99.4 2.2E-12 7.4E-17 127.3 11.4 106 472-592 32-137 (193)
133 2wfh_A SLIT homolog 2 protein 99.3 3.4E-12 1.2E-16 125.9 12.1 107 507-624 32-139 (193)
134 1ds9_A Outer arm dynein; leuci 99.3 2.1E-14 7E-19 142.6 -4.4 141 415-571 10-157 (198)
135 3sb4_A Hypothetical leucine ri 99.3 1.3E-12 4.4E-17 140.5 8.6 61 422-483 48-136 (329)
136 3sb4_A Hypothetical leucine ri 99.3 3.8E-12 1.3E-16 136.8 9.7 58 505-563 100-157 (329)
137 1a9n_A U2A', U2A'; complex (nu 99.3 2.6E-12 8.8E-17 124.8 6.7 58 507-566 43-100 (176)
138 1a9n_A U2A', U2A'; complex (nu 99.3 1.5E-12 5.3E-17 126.3 4.8 128 445-592 17-151 (176)
139 2o6r_A Variable lymphocyte rec 99.2 4E-11 1.4E-15 116.3 12.9 104 450-567 10-113 (177)
140 4fdw_A Leucine rich hypothetic 99.2 1.9E-10 6.7E-15 126.6 16.6 249 423-734 113-366 (401)
141 4fdw_A Leucine rich hypothetic 99.2 2.9E-10 9.9E-15 125.2 17.3 245 447-754 113-357 (401)
142 1ds9_A Outer arm dynein; leuci 99.2 4.2E-13 1.4E-17 133.1 -5.9 135 499-650 41-185 (198)
143 3g39_A Variable lymphocyte rec 99.1 3.4E-10 1.2E-14 109.0 11.0 103 451-567 13-115 (170)
144 3g39_A Variable lymphocyte rec 99.1 2E-10 6.9E-15 110.6 8.9 103 473-592 11-113 (170)
145 2r9u_A Variable lymphocyte rec 99.1 2E-10 7E-15 111.0 8.9 104 450-567 15-118 (174)
146 2r9u_A Variable lymphocyte rec 99.1 5.3E-10 1.8E-14 108.0 11.2 102 474-592 15-116 (174)
147 4fs7_A Uncharacterized protein 98.9 9.5E-09 3.3E-13 113.1 16.5 198 418-647 66-263 (394)
148 4fs7_A Uncharacterized protein 98.8 2.2E-08 7.4E-13 110.2 14.5 200 416-647 87-286 (394)
149 3un9_A NLR family member X1; l 98.8 2.4E-10 8.1E-15 124.6 -1.3 178 421-636 70-262 (372)
150 2ifg_A High affinity nerve gro 98.8 3.3E-09 1.1E-13 114.6 7.5 103 451-567 12-116 (347)
151 2ifg_A High affinity nerve gro 98.8 1E-08 3.5E-13 110.7 10.7 104 427-544 12-117 (347)
152 3un9_A NLR family member X1; l 98.8 8E-10 2.7E-14 120.4 0.6 139 423-568 101-253 (372)
153 4gt6_A Cell surface protein; l 98.6 5.3E-07 1.8E-11 99.0 17.4 98 688-798 288-390 (394)
154 2ra8_A Uncharacterized protein 98.4 1.4E-07 4.8E-12 101.9 6.1 34 505-538 192-227 (362)
155 4gt6_A Cell surface protein; l 98.4 3E-06 1E-10 93.0 15.3 289 418-780 82-388 (394)
156 2ra8_A Uncharacterized protein 98.3 2.3E-07 7.8E-12 100.2 4.2 185 418-648 134-341 (362)
157 3rw6_A Nuclear RNA export fact 98.1 5.7E-07 1.9E-11 92.2 1.9 16 555-570 221-236 (267)
158 4h09_A Hypothetical leucine ri 98.1 9.8E-05 3.4E-09 80.3 19.5 126 419-564 42-168 (379)
159 4h09_A Hypothetical leucine ri 98.0 0.00013 4.5E-09 79.3 18.2 255 417-733 63-329 (379)
160 3rw6_A Nuclear RNA export fact 98.0 6.8E-06 2.3E-10 84.2 7.3 82 468-560 167-257 (267)
161 1io0_A Tropomodulin; LRR prote 98.0 2.7E-06 9.2E-11 82.7 3.7 93 467-566 61-163 (185)
162 1io0_A Tropomodulin; LRR prote 97.9 7E-06 2.4E-10 79.7 3.9 122 414-542 27-163 (185)
163 3e4g_A ATP synthase subunit S, 97.5 4.9E-05 1.7E-09 72.3 3.8 83 472-565 62-150 (176)
164 3e4g_A ATP synthase subunit S, 97.4 0.00016 5.6E-09 68.7 6.4 87 448-545 62-154 (176)
165 1pgv_A TMD-1, tropomodulin TMD 95.0 0.022 7.4E-07 55.0 5.0 92 467-565 66-168 (197)
166 1pgv_A TMD-1, tropomodulin TMD 94.7 0.014 4.8E-07 56.3 2.9 19 499-517 63-81 (197)
167 3rfe_A Platelet glycoprotein I 94.1 0.055 1.9E-06 48.6 5.2 45 681-726 24-68 (130)
168 3rfe_A Platelet glycoprotein I 93.9 0.048 1.6E-06 48.9 4.5 56 691-755 11-68 (130)
169 1hqc_A RUVB; extended AAA-ATPa 56.4 3.4 0.00012 42.7 1.3 36 267-303 288-324 (324)
170 1w5s_A Origin recognition comp 33.1 27 0.00093 37.0 3.9 69 233-305 299-372 (412)
171 2qen_A Walker-type ATPase; unk 31.4 72 0.0024 32.6 6.8 66 241-325 281-348 (350)
172 2lz0_A Uncharacterized protein 29.4 82 0.0028 26.0 5.4 24 458-481 7-30 (100)
173 2lz0_A Uncharacterized protein 25.8 35 0.0012 28.3 2.4 47 434-481 7-53 (100)
No 1
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=5.1e-31 Score=310.39 Aligned_cols=342 Identities=10% Similarity=0.054 Sum_probs=275.0
Q ss_pred hhhhhhhccccccccccchhhcch-----------------hhhhhc--cccCceeeecCCcccCCCChhhhccCCCCCE
Q 045877 415 KAVEFEKIKKLFNFSLSLEEIENK-----------------AKDCAM--KRGRIETLFNVSEEFPEFKYDWFSKLEKIKV 475 (801)
Q Consensus 415 ~~~~~~~l~~L~~L~Ls~N~l~~~-----------------~~~~~~--~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~ 475 (801)
.+..|+++++|++|+|++|+|++. +|..+. .+++|++|.+.+|.+.+..|..|.++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 456799999999999999999996 888888 9999999999999999988999999999999
Q ss_pred EEcCCcc-cCCCCCCcccccchhhhHhhcCC------cCCceEeecCCCCCccCch--hhcCCCCCCEEeccCCCCCCCC
Q 045877 476 LYLGRWQ-STVDDIPHIEIESTDYLKGLKNM------KELRLLSLQGMSGIQELPS--EISYLTSLEILDLRACYNLDKL 546 (801)
Q Consensus 476 L~Ls~n~-l~~~~~~~~~~~~~~lp~~l~~l------~~L~~L~Ls~n~~~~~lp~--~i~~L~~L~~L~Ls~n~~~~~l 546 (801)
|+|++|+ +++ ..+|..++.+ ++|++|+|++|.+. .+|. .++++++|++|+|++|.+.+.+
T Consensus 278 L~Ls~n~~l~~----------~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 278 INVACNRGISG----------EQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp EECTTCTTSCH----------HHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred EECcCCCCCcc----------ccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccch
Confidence 9999998 742 1577878776 99999999998766 8998 9999999999999999888899
Q ss_pred cccccCCCCCCEEcccCCccccCCCcccCCCCc-ccccccccccCCcchhhhhhcccCcccccCCc--cCCeeEeecccc
Q 045877 547 PDEIGKLKSLTHLDISECFLLDGIPKKLSLLSK-LQVLKGFVISDHAEDDRRWKRWCSLKDLEKLE--HLRKLTININSE 623 (801)
Q Consensus 547 p~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~-L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~--~L~~L~L~~n~~ 623 (801)
| .++.+++|++|++++|.+. .+|..+..+++ |++|+ +++|. ...+|..+..+. +|+.|++++|.+
T Consensus 347 p-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~---Ls~N~-------l~~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLS---FAHNK-------LKYIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp C-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEE---CCSSC-------CSSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred h-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEE---ccCCc-------CcccchhhhhcccCccCEEECcCCcC
Confidence 9 8999999999999999987 88989999999 99999 88888 556777777655 899999999999
Q ss_pred cccccChhhhh-------cccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCC--------
Q 045877 624 KFQTENLSTVL-------AFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVES-------- 688 (801)
Q Consensus 624 ~~~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~-------- 688 (801)
.+.. +..+. .+.+|+.|+|++|.+.+.....+ .....++.|+...+.+..+......
T Consensus 415 ~~~~--p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~------~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~ 486 (636)
T 4eco_A 415 GSVD--GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF------STGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486 (636)
T ss_dssp TTTT--TCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHH------HTTCCCSEEECCSSCCSBCCSSSSEETTEECTT
T ss_pred CCcc--hhhhcccccccccCCCCCEEECcCCccCcCCHHHH------ccCCCCCEEECCCCCCCCcCHHHhccccccccc
Confidence 8766 55566 77899999999999885432111 0123455666666655533322221
Q ss_pred --CccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccc------cccccc-----
Q 045877 689 --KLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKI------DWKGLQ----- 755 (801)
Q Consensus 689 --~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l------~~n~l~----- 755 (801)
+|+.|+|++|.+..+|..+....+++|++|+|++|.|++++. .+ ..+.+|+.|++ ++|.+.
T Consensus 487 l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~-~~-----~~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT-QP-----LNSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp GGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCC-GG-----GGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred cCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcCh-hh-----hcCCCCCEEECCCCcccccCcccccChH
Confidence 899999999999999987743489999999999999999654 33 24566666666 345554
Q ss_pred --CcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 756 --ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 756 --~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
+.+++|+.|++++| ++..+|.. +. ++|+.||+++|++.
T Consensus 561 ~l~~l~~L~~L~Ls~N-~l~~ip~~---~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 561 GITLCPSLTQLQIGSN-DIRKVNEK---IT--PNISVLDIKDNPNI 600 (636)
T ss_dssp TGGGCSSCCEEECCSS-CCCBCCSC---CC--TTCCEEECCSCTTC
T ss_pred HHhcCCCCCEEECCCC-cCCccCHh---Hh--CcCCEEECcCCCCc
Confidence 34677888888887 56777763 33 79999999999875
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.3e-30 Score=307.06 Aligned_cols=328 Identities=13% Similarity=0.117 Sum_probs=180.8
Q ss_pred hhhhhccccCceeeecCCcccCCC-----------------Chhhhc--cCCCCCEEEcCCcccCCCCCCcccccchhhh
Q 045877 439 AKDCAMKRGRIETLFNVSEEFPEF-----------------KYDWFS--KLEKIKVLYLGRWQSTVDDIPHIEIESTDYL 499 (801)
Q Consensus 439 ~~~~~~~~~~L~~L~l~~n~i~~~-----------------~~~~f~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp 499 (801)
+|..+..+++|++|.+.+|.+.+. .|..+. ++++|++|+|++|.+.+ .+|
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~-----------~~p 266 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT-----------KLP 266 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS-----------SCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc-----------cCh
Confidence 445555666666666666666552 344444 66666666666665532 345
Q ss_pred HhhcCCcCCceEeecCCC-CCc-cCchhhcCC------CCCCEEeccCCCCCCCCcc--cccCCCCCCEEcccCCccccC
Q 045877 500 KGLKNMKELRLLSLQGMS-GIQ-ELPSEISYL------TSLEILDLRACYNLDKLPD--EIGKLKSLTHLDISECFLLDG 569 (801)
Q Consensus 500 ~~l~~l~~L~~L~Ls~n~-~~~-~lp~~i~~L------~~L~~L~Ls~n~~~~~lp~--~~~~L~~L~~L~Ls~n~l~~~ 569 (801)
..|+++++|++|+|++|. +.+ .+|..++++ ++|++|+|++|.+. .+|. .++++++|++|++++|.+.|.
T Consensus 267 ~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccc
Confidence 556666666666666665 444 566655554 66666666666544 5565 566666666666666666656
Q ss_pred CCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCcc-CCeeEeecccccccccChhhhhccc--CCcEEEeec
Q 045877 570 IPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEH-LRKLTININSEKFQTENLSTVLAFK--RLLQLKVSW 646 (801)
Q Consensus 570 ~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~-L~~L~L~~n~~~~~~~~~~~l~~l~--~L~~L~L~~ 646 (801)
+| .++.+++|++|+ +++|. ...++..+..+++ |++|++++|.+... +..+..+. +|+.|++++
T Consensus 346 ip-~~~~l~~L~~L~---L~~N~-------l~~lp~~l~~l~~~L~~L~Ls~N~l~~l---p~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 346 LP-AFGSEIKLASLN---LAYNQ-------ITEIPANFCGFTEQVENLSFAHNKLKYI---PNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp CC-CCEEEEEESEEE---CCSSE-------EEECCTTSEEECTTCCEEECCSSCCSSC---CSCCCTTCSSCEEEEECCS
T ss_pred hh-hhCCCCCCCEEE---CCCCc-------cccccHhhhhhcccCcEEEccCCcCccc---chhhhhcccCccCEEECcC
Confidence 66 566666666666 55555 3345555666666 66666666665522 33333332 566666666
Q ss_pred cCCCCCCCCCCC-CCCCccchhchhhhhcccccccccccc---cCCCccEEEccCCCCCCCCcccCC------CCCCCcc
Q 045877 647 GGGSANKSTKPE-PQTGRKDNFFIKTLTKFRTRVTERSQH---VESKLEKLDFQCFPDEKLPSWVHP------YSFKNLK 716 (801)
Q Consensus 647 n~l~~~~~~~~~-~~~~~~~~~~l~~L~~~~~~l~~~~~~---~~~~L~~L~L~~n~~~~lp~~l~~------~~l~~L~ 716 (801)
|.+.+..+..+. ..........++.|+...+.+..+... ..++|+.|+|++|.+..+|..++. .++++|+
T Consensus 412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~ 491 (636)
T 4eco_A 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491 (636)
T ss_dssp SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCC
T ss_pred CcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCcc
Confidence 666655443331 001111122344444444444332211 124566666666666666655430 0112666
Q ss_pred EEEeeCCcCCCCCCCcccccceeccccccccccccccccC------cCCCCceeeccCCC------CCcccCCCCCcccc
Q 045877 717 NLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQE------LFPKLEYLEKFKCH------KVTLCPCDGYGIWE 784 (801)
Q Consensus 717 ~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~~------~~p~L~~L~l~~c~------~L~~lp~~~n~i~~ 784 (801)
+|+|++|.++.++...+ ...+++|+.|++++|.+++ .+++|+.|+++++. -...+|. .+.+
T Consensus 492 ~L~Ls~N~l~~lp~~~~----~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~---~l~~ 564 (636)
T 4eco_A 492 SIDLRFNKLTKLSDDFR----ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE---GITL 564 (636)
T ss_dssp EEECCSSCCCBCCGGGS----TTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT---TGGG
T ss_pred EEECcCCcCCccChhhh----hccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChH---HHhc
Confidence 66666666664443111 0145566677777777652 34566666664432 1222332 6678
Q ss_pred cCCcceEeCCCcccc
Q 045877 785 KSDLINLNNSKQQHR 799 (801)
Q Consensus 785 ~~~L~~LdlS~~~~~ 799 (801)
+++|+.||+++|++.
T Consensus 565 l~~L~~L~Ls~N~l~ 579 (636)
T 4eco_A 565 CPSLTQLQIGSNDIR 579 (636)
T ss_dssp CSSCCEEECCSSCCC
T ss_pred CCCCCEEECCCCcCC
Confidence 899999999999874
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.5e-30 Score=312.26 Aligned_cols=312 Identities=15% Similarity=0.172 Sum_probs=163.1
Q ss_pred hhhhccCCCCCEEEcCCcccCCCCCCcccc------cchhhhHhhc--CCcCCceEeecCCCCCccCchhhcCCCCCCEE
Q 045877 464 YDWFSKLEKIKVLYLGRWQSTVDDIPHIEI------ESTDYLKGLK--NMKELRLLSLQGMSGIQELPSEISYLTSLEIL 535 (801)
Q Consensus 464 ~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~------~~~~lp~~l~--~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L 535 (801)
|..|.++++|++|+|++|.+++..++...+ ....+|..++ ++++|++|+|++|.+.+.+|..|++|++|++|
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 445666677777777777665411110000 0001455555 66666677776666666666666666666666
Q ss_pred eccCCC-CCC-CCcccccCCC-------CCCEEcccCCccccCCCc--ccCCCCcccccccccccCCcchhhhhhcccCc
Q 045877 536 DLRACY-NLD-KLPDEIGKLK-------SLTHLDISECFLLDGIPK--KLSLLSKLQVLKGFVISDHAEDDRRWKRWCSL 604 (801)
Q Consensus 536 ~Ls~n~-~~~-~lp~~~~~L~-------~L~~L~Ls~n~l~~~~p~--~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~ 604 (801)
+|++|. +.+ .+|..++++. +|++|+|++|.+. .+|. .|+++++|+.|+ +++|. ...++
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~---Ls~N~-------l~~lp 589 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLD---CVHNK-------VRHLE 589 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEE---CTTSC-------CCBCC
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEE---CCCCC-------cccch
Confidence 666665 554 5665555444 6666666666665 5666 666666666666 66665 33344
Q ss_pred ccccCCccCCeeEeecccccccccChhhhhcccC-CcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccc
Q 045877 605 KDLEKLEHLRKLTININSEKFQTENLSTVLAFKR-LLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERS 683 (801)
Q Consensus 605 ~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~ 683 (801)
.|+.+++|+.|+|++|.+. .. +..+..+++ |+.|+|++|.+... +..+ .......++.|+...+.+....
T Consensus 590 -~~~~L~~L~~L~Ls~N~l~-~l--p~~l~~l~~~L~~L~Ls~N~L~~l-p~~~----~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQIE-EI--PEDFCAFTDQVEGLGFSHNKLKYI-PNIF----NAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp -CCCTTSEESEEECCSSCCS-CC--CTTSCEECTTCCEEECCSSCCCSC-CSCC----CTTCSSCEEEEECCSSCTTTTS
T ss_pred -hhcCCCcceEEECcCCccc-cc--hHHHhhccccCCEEECcCCCCCcC-chhh----hccccCCCCEEECcCCcCCCcc
Confidence 6666666666666666665 22 445666666 66666666666532 2111 1111111333333333332211
Q ss_pred cccC--------CCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCccc----------cccee------
Q 045877 684 QHVE--------SKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWE----------TVKVL------ 739 (801)
Q Consensus 684 ~~~~--------~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~----------~L~~l------ 739 (801)
+.++ .+|+.|+|++|.+..+|.+++ ..+++|+.|+|++|.|+.++...|. +|+.|
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~-~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELF-ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHH-HTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC
T ss_pred ccchhhhccccCCCcCEEEccCCcCCccCHHHH-ccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC
Confidence 1111 244444444444444444332 2344444444444444433332221 11111
Q ss_pred -----------cccccccccccccccc------CcCCCCceeeccCCCC------CcccCCCCCcccccCCcceEeCCCc
Q 045877 740 -----------RLKYLNELKIDWKGLQ------ELFPKLEYLEKFKCHK------VTLCPCDGYGIWEKSDLINLNNSKQ 796 (801)
Q Consensus 740 -----------~L~~L~~L~l~~n~l~------~~~p~L~~L~l~~c~~------L~~lp~~~n~i~~~~~L~~LdlS~~ 796 (801)
.+++|+.|++++|.++ +.+++|+.|++++++. ...+| ..+.++++|+.|||++|
T Consensus 740 L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip---~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 740 LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP---TGITTCPSLIQLQIGSN 816 (876)
T ss_dssp CCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC---TTGGGCSSCCEEECCSS
T ss_pred CccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccCh---HHHhcCCCCCEEECCCC
Confidence 3455566666666655 2345566666655321 12222 26677888999999988
Q ss_pred ccc
Q 045877 797 QHR 799 (801)
Q Consensus 797 ~~~ 799 (801)
++.
T Consensus 817 ~L~ 819 (876)
T 4ecn_A 817 DIR 819 (876)
T ss_dssp CCC
T ss_pred CCC
Confidence 873
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=4.6e-30 Score=307.91 Aligned_cols=321 Identities=13% Similarity=0.095 Sum_probs=214.0
Q ss_pred hhhhhccccCceeeecCCcccCC-----------------CChhhhc--cCCCCCEEEcCCcccCCCCCCcccccchhhh
Q 045877 439 AKDCAMKRGRIETLFNVSEEFPE-----------------FKYDWFS--KLEKIKVLYLGRWQSTVDDIPHIEIESTDYL 499 (801)
Q Consensus 439 ~~~~~~~~~~L~~L~l~~n~i~~-----------------~~~~~f~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp 499 (801)
+|..|..+++|+.|.+.+|.+.+ ..|..+. ++++|++|+|++|.+.+ .+|
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~-----------~iP 508 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT-----------QLP 508 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC-----------SCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc-----------cCh
Confidence 56678888888888888888887 1344444 88888888888888753 457
Q ss_pred HhhcCCcCCceEeecCCC-CCc-cCchhhcCCC-------CCCEEeccCCCCCCCCcc--cccCCCCCCEEcccCCcccc
Q 045877 500 KGLKNMKELRLLSLQGMS-GIQ-ELPSEISYLT-------SLEILDLRACYNLDKLPD--EIGKLKSLTHLDISECFLLD 568 (801)
Q Consensus 500 ~~l~~l~~L~~L~Ls~n~-~~~-~lp~~i~~L~-------~L~~L~Ls~n~~~~~lp~--~~~~L~~L~~L~Ls~n~l~~ 568 (801)
..|+++++|++|+|++|. +.+ .+|..++++. +|++|+|++|.+. .+|. .++++++|++|+|++|.+.
T Consensus 509 ~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~- 586 (876)
T 4ecn_A 509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR- 586 (876)
T ss_dssp GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-
T ss_pred HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-
Confidence 778888888888888886 555 6787666655 8888888888666 7787 7888888888888888877
Q ss_pred CCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCcc-CCeeEeecccccccccChhhhhccc--CCcEEEee
Q 045877 569 GIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEH-LRKLTININSEKFQTENLSTVLAFK--RLLQLKVS 645 (801)
Q Consensus 569 ~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~-L~~L~L~~n~~~~~~~~~~~l~~l~--~L~~L~L~ 645 (801)
.+| .|+.+++|+.|+ +++|. ...++..+..+++ |+.|+|++|.+... +..+..+. +|+.|+|+
T Consensus 587 ~lp-~~~~L~~L~~L~---Ls~N~-------l~~lp~~l~~l~~~L~~L~Ls~N~L~~l---p~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 587 HLE-AFGTNVKLTDLK---LDYNQ-------IEEIPEDFCAFTDQVEGLGFSHNKLKYI---PNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp BCC-CCCTTSEESEEE---CCSSC-------CSCCCTTSCEECTTCCEEECCSSCCCSC---CSCCCTTCSSCEEEEECC
T ss_pred cch-hhcCCCcceEEE---CcCCc-------cccchHHHhhccccCCEEECcCCCCCcC---chhhhccccCCCCEEECc
Confidence 777 788888888888 77777 4466777888888 88888888887733 44455443 38888888
Q ss_pred ccCCCCCCCCCCCCCCCccch------------------------hchhhhhcccccccccccccCC----------Ccc
Q 045877 646 WGGGSANKSTKPEPQTGRKDN------------------------FFIKTLTKFRTRVTERSQHVES----------KLE 691 (801)
Q Consensus 646 ~n~l~~~~~~~~~~~~~~~~~------------------------~~l~~L~~~~~~l~~~~~~~~~----------~L~ 691 (801)
+|.+.+..+... ..+..... ..++.|+...+.+..+...... +|+
T Consensus 653 ~N~l~g~ip~l~-~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~ 731 (876)
T 4ecn_A 653 YNKIGSEGRNIS-CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731 (876)
T ss_dssp SSCTTTTSSSCS-SCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCC
T ss_pred CCcCCCccccch-hhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCcc
Confidence 887776543211 00111111 1233333333333222111111 566
Q ss_pred EEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccc------cccc-------CcC
Q 045877 692 KLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDW------KGLQ-------ELF 758 (801)
Q Consensus 692 ~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~------n~l~-------~~~ 758 (801)
.|+|++|.+..+|..+....+++|+.|+|++|.|++++. .+ ..+++|+.|++++ |.+. +.+
T Consensus 732 ~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~-~l-----~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT-QP-----LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp EEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCC-GG-----GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred EEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccch-hh-----hcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 666666666666655432356666666666666666432 12 1445666676655 5554 346
Q ss_pred CCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 759 PKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 759 p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
++|+.|++++| ++..+|.. +. ++|+.||||+|++.
T Consensus 806 ~~L~~L~Ls~N-~L~~Ip~~---l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 806 PSLIQLQIGSN-DIRKVDEK---LT--PQLYILDIADNPNI 840 (876)
T ss_dssp SSCCEEECCSS-CCCBCCSC---CC--SSSCEEECCSCTTC
T ss_pred CCCCEEECCCC-CCCccCHh---hc--CCCCEEECCCCCCC
Confidence 67888888887 55777763 33 69999999999875
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.4e-30 Score=313.61 Aligned_cols=228 Identities=20% Similarity=0.120 Sum_probs=143.7
Q ss_pred hhhhhhccccccccccchhhcchhhhh-hccccCceeeecCCcccCCCChhhhccCC-CCCEEEcCCcccCCCCCC----
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDC-AMKRGRIETLFNVSEEFPEFKYDWFSKLE-KIKVLYLGRWQSTVDDIP---- 489 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~f~~l~-~L~~L~Ls~n~l~~~~~~---- 489 (801)
+..|..+++|++|+|++|++.+..|.. +..+++|+.|.+.+|.+.+..+..|.++. +|++|+|++|.+++...+
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred chHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh
Confidence 345566666666666666666444433 56666666666666666544555555554 566666666555431111
Q ss_pred -------cccccc----hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCE
Q 045877 490 -------HIEIES----TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTH 558 (801)
Q Consensus 490 -------~~~~~~----~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~ 558 (801)
.+.+.. ..+|..+.++++|++|+|++|.+.+.+|..++++++|++|+|++|.+.+.+|..++.+++|++
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 000000 134566667777777777777666667777777777777777777666677777777777777
Q ss_pred EcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcc-cCcccccCCccCCeeEeecccccccccChhhhhccc
Q 045877 559 LDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRW-CSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFK 637 (801)
Q Consensus 559 L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~-~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~ 637 (801)
|++++|.+.+.+|..++.+++|++|+ +++|. .. ..|..++.+++|++|+|++|.+.+.. +..+..++
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~---L~~N~-------l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~ 538 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWIS---LSNNR-------LTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCR 538 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEE---CCSSC-------CCSCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGGGCT
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEE---ccCCc-------cCCcCChHHhcCCCCCEEECCCCcccCcC--CHHHcCCC
Confidence 77777777777777777777777776 66665 22 45566777777777777777776655 66677777
Q ss_pred CCcEEEeeccCCCCCCCC
Q 045877 638 RLLQLKVSWGGGSANKST 655 (801)
Q Consensus 638 ~L~~L~L~~n~l~~~~~~ 655 (801)
+|+.|++++|.+.|..+.
T Consensus 539 ~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp TCCEEECCSSEEESBCCG
T ss_pred CCCEEECCCCccCCcCCh
Confidence 777777777777665543
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=2.1e-30 Score=312.17 Aligned_cols=222 Identities=19% Similarity=0.175 Sum_probs=108.5
Q ss_pred hccccccccccchhhcchhhhhhccc-cCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCc---------
Q 045877 421 KIKKLFNFSLSLEEIENKAKDCAMKR-GRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPH--------- 490 (801)
Q Consensus 421 ~l~~L~~L~Ls~N~l~~~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~--------- 490 (801)
.+++|++|+|++|++++..|..+... ++|+.|.+.+|.+.+..+..|.++++|++|+|++|.+++. +|.
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-ip~~~l~~l~~L 345 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE-LPMDTLLKMRGL 345 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE-CCHHHHTTCTTC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCc-CCHHHHhcCCCC
Confidence 34444444555555444444444332 4555555555555544445555555555555555544210 000
Q ss_pred --cccc----chhhhHhhcCCc-CCceEeecCCCCCccCchhhcC--CCCCCEEeccCCCCCCCCcccccCCCCCCEEcc
Q 045877 491 --IEIE----STDYLKGLKNMK-ELRLLSLQGMSGIQELPSEISY--LTSLEILDLRACYNLDKLPDEIGKLKSLTHLDI 561 (801)
Q Consensus 491 --~~~~----~~~lp~~l~~l~-~L~~L~Ls~n~~~~~lp~~i~~--L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~L 561 (801)
+.+. ...+|..+..+. +|++|+|++|.+.+.+|..++. +++|++|+|++|.+.+.+|..++++++|++|++
T Consensus 346 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 425 (768)
T 3rgz_A 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425 (768)
T ss_dssp CEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEEC
T ss_pred CEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEEC
Confidence 0000 012233333333 4444444444444444444433 445555555555555555555555555666666
Q ss_pred cCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcE
Q 045877 562 SECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQ 641 (801)
Q Consensus 562 s~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~ 641 (801)
++|.+.+.+|..++.+++|+.|+ +++|. + ....+..+..+++|++|++++|.+.+.. +..+.++++|+.
T Consensus 426 s~N~l~~~~p~~l~~l~~L~~L~---L~~n~-----l-~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~ 494 (768)
T 3rgz_A 426 SFNYLSGTIPSSLGSLSKLRDLK---LWLNM-----L-EGEIPQELMYVKTLETLILDFNDLTGEI--PSGLSNCTNLNW 494 (768)
T ss_dssp CSSEEESCCCGGGGGCTTCCEEE---CCSSC-----C-CSCCCGGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCE
T ss_pred cCCcccCcccHHHhcCCCCCEEE---CCCCc-----c-cCcCCHHHcCCCCceEEEecCCcccCcC--CHHHhcCCCCCE
Confidence 66655555555555555555555 55544 0 1134455556666666666666655544 555566666666
Q ss_pred EEeeccCCCCCCC
Q 045877 642 LKVSWGGGSANKS 654 (801)
Q Consensus 642 L~L~~n~l~~~~~ 654 (801)
|+|++|.+.+..+
T Consensus 495 L~L~~N~l~~~~p 507 (768)
T 3rgz_A 495 ISLSNNRLTGEIP 507 (768)
T ss_dssp EECCSSCCCSCCC
T ss_pred EEccCCccCCcCC
Confidence 6666666655443
No 7
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=2e-29 Score=292.23 Aligned_cols=350 Identities=16% Similarity=0.121 Sum_probs=191.2
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
++|++|+|++|+|+++.+..|..+++|++|.+.+|.+..+++..|.++++|++|+|++|.+++. .+..|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------~~~~~ 94 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-----------SSSWF 94 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-----------CHHHH
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-----------CHHHh
Confidence 4566666666666666666666666666666666666666666666666666666666665421 13445
Q ss_pred cCCcCCceEeecCCCCCc-cCchhhcCCCCCCEEeccCCCCCCCCc-ccccCCCCCCEEcccCCccccCCCcccCCCCcc
Q 045877 503 KNMKELRLLSLQGMSGIQ-ELPSEISYLTSLEILDLRACYNLDKLP-DEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL 580 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp-~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L 580 (801)
+++++|++|+|++|.+.+ ..|..++++++|++|++++|...+.+| ..+.++++|++|++++|.+.+.+|..++.+++|
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 174 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccC
Confidence 666666666666654433 234556666666666666665444443 355666666666666666665555555555555
Q ss_pred cccccc---------------------cccCCcchhhhhhcccC-c-ccc----------------------------cC
Q 045877 581 QVLKGF---------------------VISDHAEDDRRWKRWCS-L-KDL----------------------------EK 609 (801)
Q Consensus 581 ~~L~~~---------------------~l~~n~~~~~~~~~~~~-~-~~l----------------------------~~ 609 (801)
++|+.. .+++|.. ..... + ... ..
T Consensus 175 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~ 249 (549)
T 2z81_A 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNL-----ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249 (549)
T ss_dssp EEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBC-----TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGG
T ss_pred ceEecccCcccccchhhHhhcccccEEEccCCcc-----ccccccccchhhhhhcccceeccccccchhHHHHHHHHhhh
Confidence 544400 0333330 00000 0 000 01
Q ss_pred C-----------------------------------------------------------ccCCeeEeecccccccccCh
Q 045877 610 L-----------------------------------------------------------EHLRKLTININSEKFQTENL 630 (801)
Q Consensus 610 L-----------------------------------------------------------~~L~~L~L~~n~~~~~~~~~ 630 (801)
+ .+|+.|++++|.+... +
T Consensus 250 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~i---p 326 (549)
T 2z81_A 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV---P 326 (549)
T ss_dssp CTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCC---C
T ss_pred hccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccC---C
Confidence 1 1222233333322211 1
Q ss_pred hh-hhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccc-----cccCCCccEEEccCCCCCCCC
Q 045877 631 ST-VLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERS-----QHVESKLEKLDFQCFPDEKLP 704 (801)
Q Consensus 631 ~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~-----~~~~~~L~~L~L~~n~~~~lp 704 (801)
.. +.++++|+.|++++|.+.+..+... ........++.|+...+.+.... ....++|+.|+|++|.+..+|
T Consensus 327 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 403 (549)
T 2z81_A 327 CSFSQHLKSLEFLDLSENLMVEEYLKNS---ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP 403 (549)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHH---TCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCC
T ss_pred HHHHhcCccccEEEccCCccccccccch---hhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCC
Confidence 22 2456666777777666654211000 00001234455555555443221 112368888888888888888
Q ss_pred cccCCCCCCCccEEEeeCCcCCCCCCCcccccceec------------ccccccccccccccc-----CcCCCCceeecc
Q 045877 705 SWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLR------------LKYLNELKIDWKGLQ-----ELFPKLEYLEKF 767 (801)
Q Consensus 705 ~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~------------L~~L~~L~l~~n~l~-----~~~p~L~~L~l~ 767 (801)
..+. .+++|++|+|++|.+++++...+++|+.++ +++|+.|++++|.++ +.+++|+.|+++
T Consensus 404 ~~~~--~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls 481 (549)
T 2z81_A 404 DSCQ--WPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKIS 481 (549)
T ss_dssp SCCC--CCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECC
T ss_pred hhhc--ccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCcccCccCCEEecC
Confidence 8776 788888888888888877665455555553 345566666666654 234556666666
Q ss_pred CCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 768 KCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 768 ~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
++ +++.++. ..+.++++|+.||+++|++.
T Consensus 482 ~N-~l~~~~~--~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 482 RN-QLKSVPD--GIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp SS-CCCCCCT--TGGGGCTTCCEEECCSSCBC
T ss_pred CC-ccCCcCH--HHHhcCcccCEEEecCCCcc
Confidence 55 4554443 24567778888888888764
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=2.4e-29 Score=284.50 Aligned_cols=345 Identities=15% Similarity=0.075 Sum_probs=266.3
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccC-CCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFP-EFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKG 501 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~ 501 (801)
++|++|+|++|+|+++.+..|..+++|++|.+.+|.+. .+.+..|.++++|++|+|++|.++. ..|..
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~~ 98 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-----------LETGA 98 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE-----------ECTTT
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc-----------cChhh
Confidence 68999999999999999999999999999999999987 5667889999999999999999853 33778
Q ss_pred hcCCcCCceEeecCCCCCccCchh--hcCCCCCCEEeccCCCCCCCCccc-ccCCCCCCEEcccCCccccCCCcccCCC-
Q 045877 502 LKNMKELRLLSLQGMSGIQELPSE--ISYLTSLEILDLRACYNLDKLPDE-IGKLKSLTHLDISECFLLDGIPKKLSLL- 577 (801)
Q Consensus 502 l~~l~~L~~L~Ls~n~~~~~lp~~--i~~L~~L~~L~Ls~n~~~~~lp~~-~~~L~~L~~L~Ls~n~l~~~~p~~~~~L- 577 (801)
|.++++|++|+|++|.+.+.+|.. ++.+++|++|+|++|.+.+..|.. +.++++|++|++++|.+.+..+..+..+
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 178 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ 178 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT
T ss_pred ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc
Confidence 999999999999999877766655 899999999999999888877876 8999999999999999998888888776
Q ss_pred -CcccccccccccCCcchhhhhhcccCc---------ccccCCccCCeeEeecccccccccChhhhhcc---cCCcEEEe
Q 045877 578 -SKLQVLKGFVISDHAEDDRRWKRWCSL---------KDLEKLEHLRKLTININSEKFQTENLSTVLAF---KRLLQLKV 644 (801)
Q Consensus 578 -~~L~~L~~~~l~~n~~~~~~~~~~~~~---------~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l---~~L~~L~L 644 (801)
.+|+.|+ ++++. ....+ ..+..+++|++|++++|.+.+.. +..+..+ ++|+.|++
T Consensus 179 ~~~L~~L~---l~~n~-------l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 179 GKHFTLLR---LSSIT-------LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM--AKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp TCEEEEEE---CTTCB-------CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH--HHHHHHHTTTCCEEEEEC
T ss_pred cccccccc---cccCc-------ccccchhhccccccccccccceeeeEecCCCcccccc--hhhhhccccccceeeEee
Confidence 6788887 77776 22222 12446789999999999988765 5555444 78999999
Q ss_pred eccCCCCCCCCCC------CCCCCccchhchhhhhcccccccccccc---cCCCccEEEccCCCCCCCC-cccCCCCCCC
Q 045877 645 SWGGGSANKSTKP------EPQTGRKDNFFIKTLTKFRTRVTERSQH---VESKLEKLDFQCFPDEKLP-SWVHPYSFKN 714 (801)
Q Consensus 645 ~~n~l~~~~~~~~------~~~~~~~~~~~l~~L~~~~~~l~~~~~~---~~~~L~~L~L~~n~~~~lp-~~l~~~~l~~ 714 (801)
++|...+...... ...+.......++.|+...+.+....+. ..++|+.|+|++|.+..++ ..+. .+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~ 324 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW--GLTH 324 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--TCTT
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc--Cccc
Confidence 8886654321110 0001111123455555555544433221 1368999999999887764 4555 8999
Q ss_pred ccEEEeeCCcCCCCCCCcccccceecccccccccccccccc-------CcCCCCceeeccCCCCCcccCCCCCcccccCC
Q 045877 715 LKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ-------ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSD 787 (801)
Q Consensus 715 L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~-------~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~ 787 (801)
|++|+|++|.++++.+..| -.+.+|+.|++++|.++ +.+++|++|++.++ +++.+|. ..+..+++
T Consensus 325 L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~ 396 (455)
T 3v47_A 325 LLKLNLSQNFLGSIDSRMF-----ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPD--GIFDRLTS 396 (455)
T ss_dssp CCEEECCSSCCCEECGGGG-----TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT--TTTTTCTT
T ss_pred CCEEECCCCccCCcChhHh-----cCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCH--hHhccCCc
Confidence 9999999999988877666 35677888888888776 45678889999886 6777665 25578899
Q ss_pred cceEeCCCccccC
Q 045877 788 LINLNNSKQQHRA 800 (801)
Q Consensus 788 L~~LdlS~~~~~~ 800 (801)
|++|++++|++..
T Consensus 397 L~~L~l~~N~l~~ 409 (455)
T 3v47_A 397 LQKIWLHTNPWDC 409 (455)
T ss_dssp CCEEECCSSCBCC
T ss_pred ccEEEccCCCccc
Confidence 9999999999864
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=9.4e-29 Score=290.20 Aligned_cols=346 Identities=16% Similarity=0.091 Sum_probs=193.4
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
+..|.++++|++|+|++|+|.++.|..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|.++...
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~-------- 121 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID-------- 121 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG--------
T ss_pred hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC--------
Confidence 345677777777777777777777777777777777777777777777777777777777777777764321
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCC--EEcccCCccc------
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLT--HLDISECFLL------ 567 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~--~L~Ls~n~l~------ 567 (801)
+..+.++++|++|+|++|.+.+.....+..+++|++|+|++|.+.+..|..++.+++|+ .|++++|.+.
T Consensus 122 ---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~ 198 (606)
T 3t6q_A 122 ---FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198 (606)
T ss_dssp ---GSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTT
T ss_pred ---cchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhH
Confidence 23355555555555555544332212233355555555555544444444445555444 4444444433
Q ss_pred ---------------------------------------------------------------------cCCCcccCCCC
Q 045877 568 ---------------------------------------------------------------------DGIPKKLSLLS 578 (801)
Q Consensus 568 ---------------------------------------------------------------------~~~p~~~~~L~ 578 (801)
+..+..|+.++
T Consensus 199 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~ 278 (606)
T 3t6q_A 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278 (606)
T ss_dssp TTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCT
T ss_pred hhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhcccc
Confidence 33333355566
Q ss_pred cccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCC
Q 045877 579 KLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPE 658 (801)
Q Consensus 579 ~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 658 (801)
+|++|+ +++|. ...+|..+..+++|++|++++|.+.... +..+..+++|+.|++++|.+.+..+....
T Consensus 279 ~L~~L~---l~~n~-------l~~lp~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 279 GLQELD---LTATH-------LSELPSGLVGLSTLKKLVLSANKFENLC--QISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp TCSEEE---CTTSC-------CSCCCSSCCSCTTCCEEECTTCCCSBGG--GGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred CCCEEe---ccCCc-------cCCCChhhcccccCCEEECccCCcCcCc--hhhhhccCcCCEEECCCCCcccccchhhh
Confidence 666666 66665 4455666777777777777777766554 45566667777777776665543322110
Q ss_pred CCCCccchhchhhhhcccccccccc------ccc-----------------------CCCccEEEccCCCCCCCC--ccc
Q 045877 659 PQTGRKDNFFIKTLTKFRTRVTERS------QHV-----------------------ESKLEKLDFQCFPDEKLP--SWV 707 (801)
Q Consensus 659 ~~~~~~~~~~l~~L~~~~~~l~~~~------~~~-----------------------~~~L~~L~L~~n~~~~lp--~~l 707 (801)
. ....++.|+...+.+.... ..+ .++|+.|++++|.+...+ .++
T Consensus 347 ~-----~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 421 (606)
T 3t6q_A 347 E-----NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421 (606)
T ss_dssp T-----TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTT
T ss_pred h-----ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhh
Confidence 0 1122222222222221110 111 134444444444433221 112
Q ss_pred CCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccccc----------CcCCCCceeeccCCCCCcccCC
Q 045877 708 HPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ----------ELFPKLEYLEKFKCHKVTLCPC 777 (801)
Q Consensus 708 ~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~----------~~~p~L~~L~l~~c~~L~~lp~ 777 (801)
. .+++|++|+|++|.+.+..+..| ..+++|+.|++++|.+. +.+++|+.|++.+| +++.++.
T Consensus 422 ~--~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~ 493 (606)
T 3t6q_A 422 Q--NLHLLKVLNLSHSLLDISSEQLF-----DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQ 493 (606)
T ss_dssp T--TCTTCCEEECTTCCCBTTCTTTT-----TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECT
T ss_pred h--CcccCCEEECCCCccCCcCHHHH-----hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccCh
Confidence 2 45555555555555544444333 23455666666666553 23566777777776 4555432
Q ss_pred CCCcccccCCcceEeCCCcccc
Q 045877 778 DGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 778 ~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
..+.++++|+.||+++|++.
T Consensus 494 --~~~~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 494 --HAFTSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp --TTTTTCTTCCEEECCSSCCC
T ss_pred --hhhccccCCCEEECCCCccC
Confidence 36678899999999999875
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.1e-28 Score=289.47 Aligned_cols=342 Identities=18% Similarity=0.103 Sum_probs=226.8
Q ss_pred hhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccch
Q 045877 417 VEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIEST 496 (801)
Q Consensus 417 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 496 (801)
..|.++++|++|+|++|+|+++.+..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|.++...
T Consensus 50 ~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~--------- 120 (606)
T 3vq2_A 50 YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE--------- 120 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSS---------
T ss_pred hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccc---------
Confidence 35667777777777777777777777777777777777777777776777777777777777777764321
Q ss_pred hhhHhhcCCcCCceEeecCCCCCc-cCchhhcCCCCCCEEeccCCCCCCCCccc--------------------------
Q 045877 497 DYLKGLKNMKELRLLSLQGMSGIQ-ELPSEISYLTSLEILDLRACYNLDKLPDE-------------------------- 549 (801)
Q Consensus 497 ~lp~~l~~l~~L~~L~Ls~n~~~~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~-------------------------- 549 (801)
+..++++++|++|+|++|.+.+ .+|..++++++|++|+|++|.+.+..|..
T Consensus 121 --~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~ 198 (606)
T 3vq2_A 121 --SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198 (606)
T ss_dssp --SSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECT
T ss_pred --ccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCc
Confidence 1234455555555555544332 34455555555555555554433322221
Q ss_pred --------------------------------------------------------------------------------
Q 045877 550 -------------------------------------------------------------------------------- 549 (801)
Q Consensus 550 -------------------------------------------------------------------------------- 549 (801)
T Consensus 199 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~ 278 (606)
T 3vq2_A 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278 (606)
T ss_dssp TTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGG
T ss_pred ccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccc
Confidence
Q ss_pred ------------------------ccCCCCCCEEcccCCccccCCCc--------------------ccCCCCccccccc
Q 045877 550 ------------------------IGKLKSLTHLDISECFLLDGIPK--------------------KLSLLSKLQVLKG 585 (801)
Q Consensus 550 ------------------------~~~L~~L~~L~Ls~n~l~~~~p~--------------------~~~~L~~L~~L~~ 585 (801)
+..+++|++|++++|.+ +.+|. .++.+++|++|+
T Consensus 279 ~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~- 356 (606)
T 3vq2_A 279 VKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLD- 356 (606)
T ss_dssp GSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEE-
T ss_pred cccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEE-
Confidence 22223344444444433 22321 244566677777
Q ss_pred ccccCCcchhhhhhcccC---cccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCC
Q 045877 586 FVISDHAEDDRRWKRWCS---LKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTG 662 (801)
Q Consensus 586 ~~l~~n~~~~~~~~~~~~---~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 662 (801)
+++|. .... +..+..+++|++|++++|.+... +..+..+++|+.|++++|.+.+..+....
T Consensus 357 --ls~n~-------l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---- 420 (606)
T 3vq2_A 357 --LSRNA-------LSFSGCCSYSDLGTNSLRHLDLSFNGAIIM---SANFMGLEELQHLDFQHSTLKRVTEFSAF---- 420 (606)
T ss_dssp --CCSSC-------EEEEEECCHHHHCCSCCCEEECCSCSEEEE---CCCCTTCTTCCEEECTTSEEESTTTTTTT----
T ss_pred --CcCCc-------cCCCcchhhhhccCCcccEeECCCCccccc---hhhccCCCCCCeeECCCCccCCccChhhh----
Confidence 77776 2222 56788899999999999987764 46788899999999999988776542110
Q ss_pred ccchhchhhhhcccccccccccc---cCCCccEEEccCCCCCC--CCcccCCCCCCCccEEEeeCCcCCCCCCCcccccc
Q 045877 663 RKDNFFIKTLTKFRTRVTERSQH---VESKLEKLDFQCFPDEK--LPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVK 737 (801)
Q Consensus 663 ~~~~~~l~~L~~~~~~l~~~~~~---~~~~L~~L~L~~n~~~~--lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~ 737 (801)
.....++.|+...+.+....+. -.++|+.|+|++|.+.. +|..+. .+++|++|+|++|.++++++..|
T Consensus 421 -~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~---- 493 (606)
T 3vq2_A 421 -LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA--NTTNLTFLDLSKCQLEQISWGVF---- 493 (606)
T ss_dssp -TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT--TCTTCCEEECTTSCCCEECTTTT----
T ss_pred -hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc--cCCCCCEEECCCCcCCccChhhh----
Confidence 1234455555555544432221 13789999999998765 677776 99999999999999999887766
Q ss_pred eecccccccccccccccc-------CcCCCCceeeccCCCCCcccCCCCCcccccC-CcceEeCCCcccc
Q 045877 738 VLRLKYLNELKIDWKGLQ-------ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKS-DLINLNNSKQQHR 799 (801)
Q Consensus 738 ~l~L~~L~~L~l~~n~l~-------~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~-~L~~LdlS~~~~~ 799 (801)
-.+.+|+.|++++|.++ +.+++|+.|++++| +++.+|. .+..++ +|++|++++|.+.
T Consensus 494 -~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~---~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 494 -DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKG---ILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp -TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEES---CGGGSCTTCCEEECCSCCCC
T ss_pred -cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCH---hHhhhcccCcEEEccCCCcc
Confidence 35677888888888876 44678999999988 5888887 477776 6999999999876
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=8.8e-28 Score=281.93 Aligned_cols=359 Identities=16% Similarity=0.157 Sum_probs=223.2
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCc-----
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPH----- 490 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~----- 490 (801)
+..|.++++|++|+|++|++.+..|..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|.++...+|.
T Consensus 74 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 153 (606)
T 3t6q_A 74 EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCT
T ss_pred hhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCc
Confidence 456788888888888888888888888888888888888888888877777888888888888888886543321
Q ss_pred ----ccccc----hhhhHhhcCCcCCc--eEeecCCCCCccCchh-----------------------------------
Q 045877 491 ----IEIES----TDYLKGLKNMKELR--LLSLQGMSGIQELPSE----------------------------------- 525 (801)
Q Consensus 491 ----~~~~~----~~lp~~l~~l~~L~--~L~Ls~n~~~~~lp~~----------------------------------- 525 (801)
+.+.. ...+..+..+.+|+ .|++++|.+.+..|..
T Consensus 154 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~ 233 (606)
T 3t6q_A 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233 (606)
T ss_dssp TCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECC
T ss_pred ccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheech
Confidence 11111 11245566666666 5666665443322221
Q ss_pred ----------------------------------------hcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCc
Q 045877 526 ----------------------------------------ISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECF 565 (801)
Q Consensus 526 ----------------------------------------i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~ 565 (801)
|+.+++|++|+|++|.+ ..+|..+..+++|++|++++|.
T Consensus 234 ~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~lp~~l~~l~~L~~L~l~~n~ 312 (606)
T 3t6q_A 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANK 312 (606)
T ss_dssp CCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC-SCCCSSCCSCTTCCEEECTTCC
T ss_pred hhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc-CCCChhhcccccCCEEECccCC
Confidence 33344455555555432 2444445555555555555555
Q ss_pred cccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEee
Q 045877 566 LLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVS 645 (801)
Q Consensus 566 l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~ 645 (801)
+.+..|..+..+++|++|+ +++|. +........+..+++|++|++++|.+......+..+..+++|+.|+++
T Consensus 313 l~~~~~~~~~~l~~L~~L~---l~~n~-----~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 384 (606)
T 3t6q_A 313 FENLCQISASNFPSLTHLS---IKGNT-----KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384 (606)
T ss_dssp CSBGGGGCGGGCTTCSEEE---CCSCS-----SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECC
T ss_pred cCcCchhhhhccCcCCEEE---CCCCC-----cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECC
Confidence 4444444455555555554 44443 000111223566666666666666665443223456667777777777
Q ss_pred ccCCCCCCCCCCCCCCCccchhchhhhhccccccccccc----ccCCCccEEEccCCCCCCC-CcccCCCCCCCccEEEe
Q 045877 646 WGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQ----HVESKLEKLDFQCFPDEKL-PSWVHPYSFKNLKNLYI 720 (801)
Q Consensus 646 ~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~----~~~~~L~~L~L~~n~~~~l-p~~l~~~~l~~L~~L~L 720 (801)
+|.+.+..+..+ .....++.|+...+.+....+ .-.++|+.|++++|.+... |.++. .+++|++|+|
T Consensus 385 ~n~l~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L 456 (606)
T 3t6q_A 385 YNEPLSLKTEAF------KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD--GLPALQHLNL 456 (606)
T ss_dssp SCSCEEECTTTT------TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT--TCTTCCEEEC
T ss_pred CCcCCcCCHHHh------cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh--CCCCCCEEEC
Confidence 776655443322 112345555555555443321 1237999999999988765 45555 8999999999
Q ss_pred eCCcCCCCCC---Ccccccceecccccccccccccccc-------CcCCCCceeeccCCCCCcccCCCCCcccccCCcce
Q 045877 721 RGGRLNSLEG---SEWETVKVLRLKYLNELKIDWKGLQ-------ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLIN 790 (801)
Q Consensus 721 ~~n~l~~~~~---~~f~~L~~l~L~~L~~L~l~~n~l~-------~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~ 790 (801)
++|.+++... ..+ ..+.+|+.|++++|.++ +.+++|++|+++++ +++.++. ..+.+++.| +
T Consensus 457 ~~n~l~~~~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--~~l~~l~~L-~ 527 (606)
T 3t6q_A 457 QGNHFPKGNIQKTNSL-----QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSI--EALSHLKGI-Y 527 (606)
T ss_dssp TTCBCGGGEECSSCGG-----GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCGGGG--GGGTTCCSC-E
T ss_pred CCCCCCccccccchhh-----ccCCCccEEECCCCccCccChhhhccccCCCEEECCCC-ccCcCCh--hHhCccccc-E
Confidence 9999876321 223 35677788888888776 34677888888877 4554432 366788999 9
Q ss_pred EeCCCccccC
Q 045877 791 LNNSKQQHRA 800 (801)
Q Consensus 791 LdlS~~~~~~ 800 (801)
||+++|++.+
T Consensus 528 L~L~~N~l~~ 537 (606)
T 3t6q_A 528 LNLASNHISI 537 (606)
T ss_dssp EECCSSCCCC
T ss_pred EECcCCcccc
Confidence 9999998863
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=8.3e-28 Score=276.80 Aligned_cols=137 Identities=12% Similarity=0.039 Sum_probs=104.0
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
++|++|+|++|+|+++.+..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|+++ .+|..
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------~lp~~- 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV------------KISCH- 87 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC------------EEECC-
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee------------ecCcc-
Confidence 67888888888888888888888888888888888888887888888888888888888874 33333
Q ss_pred cCCcCCceEeecCCCCCc-cCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCC--CEEcccCCcc--ccCCCcccCC
Q 045877 503 KNMKELRLLSLQGMSGIQ-ELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSL--THLDISECFL--LDGIPKKLSL 576 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L--~~L~Ls~n~l--~~~~p~~~~~ 576 (801)
.+++|++|+|++|.+.+ .+|..++++++|++|+|++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~ 162 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccc
Confidence 67888888888876655 467788888888888888876554 346666777 8888888777 5555555544
No 13
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.2e-27 Score=278.22 Aligned_cols=339 Identities=13% Similarity=0.005 Sum_probs=222.7
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
++|+.|+|++|+|+++.+..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|.++ .+|..
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------~lp~~- 118 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ------------NISCC- 118 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC------------EECSC-
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC------------ccCcc-
Confidence 67888999999999888888888999999999999998888888999999999999999884 33444
Q ss_pred cCCcCCceEeecCCCCCc-cCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCC--CEEcccCCcc--ccCCCcccCCC
Q 045877 503 KNMKELRLLSLQGMSGIQ-ELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSL--THLDISECFL--LDGIPKKLSLL 577 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L--~~L~Ls~n~l--~~~~p~~~~~L 577 (801)
.+++|++|+|++|.+.+ .+|..|+++++|++|+|++|.+.+. .+..+++| ++|++++|.+ .+..|..+..+
T Consensus 119 -~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l 194 (562)
T 3a79_B 119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194 (562)
T ss_dssp -CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEEC
T ss_pred -ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCccccccc
Confidence 78889999999886554 3457888899999999998876543 34555555 8888888887 66666555443
Q ss_pred --------------------------CcccccccccccCCcchhhhhh--------------------------cccCcc
Q 045877 578 --------------------------SKLQVLKGFVISDHAEDDRRWK--------------------------RWCSLK 605 (801)
Q Consensus 578 --------------------------~~L~~L~~~~l~~n~~~~~~~~--------------------------~~~~~~ 605 (801)
++|+.|+ ++.|......+. ....+.
T Consensus 195 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~---l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~ 271 (562)
T 3a79_B 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN---IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271 (562)
T ss_dssp CEEEEEEEECSSSCCCCCCEEEESSEEEEEEEE---EECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH
T ss_pred CcceEEEEecCccchhhhhhhcccccceEEEec---ccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH
Confidence 2344433 333310000000 000000
Q ss_pred cccCCccCCeeEeecccccccccC---------------------------------------------------hhhhh
Q 045877 606 DLEKLEHLRKLTININSEKFQTEN---------------------------------------------------LSTVL 634 (801)
Q Consensus 606 ~l~~L~~L~~L~L~~n~~~~~~~~---------------------------------------------------~~~l~ 634 (801)
.....+|++|++++|.+.+.... .....
T Consensus 272 -~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 350 (562)
T 3a79_B 272 -FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP 350 (562)
T ss_dssp -HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCS
T ss_pred -hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCcc
Confidence 00011334444444433321100 00015
Q ss_pred cccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccc-----cccCCCccEEEccCCCCCC-CCcccC
Q 045877 635 AFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERS-----QHVESKLEKLDFQCFPDEK-LPSWVH 708 (801)
Q Consensus 635 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~-----~~~~~~L~~L~L~~n~~~~-lp~~l~ 708 (801)
.+++|++|++++|.+.+..+..+ .....++.|+...+.+.... ..-.++|+.|+|++|.+.. +|...+
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~------~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGC------STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTC------CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred CCCCceEEECCCCccccchhhhh------cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence 67788888888888877544332 11234555555555444321 1113688999999888876 776543
Q ss_pred CCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccccc------CcCCCCceeeccCCCCCcccCCCCCcc
Q 045877 709 PYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ------ELFPKLEYLEKFKCHKVTLCPCDGYGI 782 (801)
Q Consensus 709 ~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~------~~~p~L~~L~l~~c~~L~~lp~~~n~i 782 (801)
..+++|++|+|++|.+++..+..++ .+|+.|++++|.++ ..+++|++|++.++ +++.+|.. .+
T Consensus 425 -~~l~~L~~L~l~~n~l~~~~~~~l~-------~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~--~~ 493 (562)
T 3a79_B 425 -AWAESILVLNLSSNMLTGSVFRCLP-------PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN-QLKSVPDG--VF 493 (562)
T ss_dssp -CCCTTCCEEECCSSCCCGGGGSSCC-------TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS-CCCCCCTT--ST
T ss_pred -cCcccCCEEECCCCCCCcchhhhhc-------CcCCEEECCCCcCcccChhhcCCCCCCEEECCCC-CCCCCCHH--HH
Confidence 4788999999999988776554442 45666666777665 35678899999886 68877763 47
Q ss_pred cccCCcceEeCCCcccc
Q 045877 783 WEKSDLINLNNSKQQHR 799 (801)
Q Consensus 783 ~~~~~L~~LdlS~~~~~ 799 (801)
..+++|+.||+++|.+.
T Consensus 494 ~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 494 DRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp TTCTTCCCEECCSCCBC
T ss_pred hcCCCCCEEEecCCCcC
Confidence 78899999999999875
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=272.45 Aligned_cols=277 Identities=18% Similarity=0.127 Sum_probs=170.5
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
++++.|+|++|+|+++.+..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|.++... +..|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------~~~~ 100 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP-----------LGVF 100 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-----------TTSS
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccC-----------cccc
Confidence 35667777777777777777777777777777777777666667777777777777777664211 2345
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~ 582 (801)
.++++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|+.
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence 66777777777776665556666677777777777777666666666777777777777777666544455666667766
Q ss_pred cccccccCCcchhhhhhccc-CcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCC
Q 045877 583 LKGFVISDHAEDDRRWKRWC-SLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQT 661 (801)
Q Consensus 583 L~~~~l~~n~~~~~~~~~~~-~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 661 (801)
|+ +++|. ... .+..|..+++|+.|++++|...... +..+....+|+.|++++|.+.+...
T Consensus 181 L~---l~~n~-------i~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~------- 241 (477)
T 2id5_A 181 LR---LRHLN-------INAIRDYSFKRLYRLKVLEISHWPYLDTM--TPNCLYGLNLTSLSITHCNLTAVPY------- 241 (477)
T ss_dssp EE---EESCC-------CCEECTTCSCSCTTCCEEEEECCTTCCEE--CTTTTTTCCCSEEEEESSCCCSCCH-------
T ss_pred Ee---CCCCc-------CcEeChhhcccCcccceeeCCCCcccccc--CcccccCccccEEECcCCcccccCH-------
Confidence 66 55555 222 2235666667777777766554443 3333334466777777666653221
Q ss_pred CccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecc
Q 045877 662 GRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRL 741 (801)
Q Consensus 662 ~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L 741 (801)
..... .++|+.|+|++|.+..++...+ ..+++|++|+|++|.++++.+..| ..+
T Consensus 242 -------------------~~~~~-l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~-----~~l 295 (477)
T 2id5_A 242 -------------------LAVRH-LVYLRFLNLSYNPISTIEGSML-HELLRLQEIQLVGGQLAVVEPYAF-----RGL 295 (477)
T ss_dssp -------------------HHHTT-CTTCCEEECCSSCCCEECTTSC-TTCTTCCEEECCSSCCSEECTTTB-----TTC
T ss_pred -------------------HHhcC-ccccCeeECCCCcCCccChhhc-cccccCCEEECCCCccceECHHHh-----cCc
Confidence 00111 2567777777766666554432 366777777777777666665555 234
Q ss_pred cccccccccccccc
Q 045877 742 KYLNELKIDWKGLQ 755 (801)
Q Consensus 742 ~~L~~L~l~~n~l~ 755 (801)
.+|+.|++++|.++
T Consensus 296 ~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 296 NYLRVLNVSGNQLT 309 (477)
T ss_dssp TTCCEEECCSSCCS
T ss_pred ccCCEEECCCCcCc
Confidence 55555666655554
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=289.45 Aligned_cols=315 Identities=16% Similarity=0.093 Sum_probs=185.5
Q ss_pred ccccccccccchhhcchhhhhhccccCceeeecCCccc-CCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhH
Q 045877 422 IKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEF-PEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLK 500 (801)
Q Consensus 422 l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i-~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~ 500 (801)
.++|++|+|++|+|+++.+..|..+++|++|.+.+|.+ ..+.+..|.++++|++|+|++|.++. ..|.
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~-----------~~p~ 91 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF-----------LHPD 91 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE-----------ECTT
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc-----------cCHh
Confidence 35677777777777777777777777777777777633 34446677777777777777777642 2356
Q ss_pred hhcCCcCCceEeecCCCCCccCchh--hcCCCCCCEEeccCCCCCCCCc-ccccCCCCCCEEcccCCccccCCCcccCCC
Q 045877 501 GLKNMKELRLLSLQGMSGIQELPSE--ISYLTSLEILDLRACYNLDKLP-DEIGKLKSLTHLDISECFLLDGIPKKLSLL 577 (801)
Q Consensus 501 ~l~~l~~L~~L~Ls~n~~~~~lp~~--i~~L~~L~~L~Ls~n~~~~~lp-~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L 577 (801)
.|.++++|++|+|++|.+.+.+|.. +++|++|++|+|++|.+.+..+ ..|+++++|++|++++|.+.+..+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 6777777777777777666555544 6777777777777776655443 457777777777777777766666666655
Q ss_pred --CcccccccccccCCcchhhhhhcccCcccccCCcc------CCeeEeecccccccccC--------------------
Q 045877 578 --SKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEH------LRKLTININSEKFQTEN-------------------- 629 (801)
Q Consensus 578 --~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~------L~~L~L~~n~~~~~~~~-------------------- 629 (801)
++|+.|+ ++.|. + ....+..++.+.+ |+.|++++|.+......
T Consensus 172 ~~~~L~~L~---L~~n~-----l-~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 172 QGKTLSFFS---LAANS-----L-YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp HHCSSCCCE---ECCSB-----S-CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred cCCccceEE---CCCCc-----c-ccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 5666666 55554 1 1112233333333 66666666644322200
Q ss_pred --------------hhhhhcc--cCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhccccccccccc---ccCCCc
Q 045877 630 --------------LSTVLAF--KRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQ---HVESKL 690 (801)
Q Consensus 630 --------------~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~---~~~~~L 690 (801)
...|.++ ++|+.|++++|.+.+..+..+ .....++.|+...+.+....+ ...++|
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 316 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF------ETLKDLKVLNLAYNKINKIADEAFYGLDNL 316 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS------SSCCCCCEEEEESCCCCEECTTTTTTCSSC
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh------hcCCCCCEEECCCCcCCCCChHHhcCCCCC
Confidence 0111111 456666666665554433222 012234444444443332211 112577
Q ss_pred cEEEccCCCCCCC-CcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccccc--CcCCCCceeecc
Q 045877 691 EKLDFQCFPDEKL-PSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ--ELFPKLEYLEKF 767 (801)
Q Consensus 691 ~~L~L~~n~~~~l-p~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~--~~~p~L~~L~l~ 767 (801)
+.|+|++|.+..+ |..+. .+++|++|+|++|.+.++++..| -.+.+|+.|++++|.++ ..+++|+.|.+.
T Consensus 317 ~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~-----~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~ 389 (844)
T 3j0a_A 317 QVLNLSYNLLGELYSSNFY--GLPKVAYIDLQKNHIAIIQDQTF-----KFLEKLQTLDLRDNALTTIHFIPSIPDIFLS 389 (844)
T ss_dssp CEEEEESCCCSCCCSCSCS--SCTTCCEEECCSCCCCCCCSSCS-----CSCCCCCEEEEETCCSCCCSSCCSCSEEEEE
T ss_pred CEEECCCCCCCccCHHHhc--CCCCCCEEECCCCCCCccChhhh-----cCCCCCCEEECCCCCCCcccCCCCcchhccC
Confidence 7777777776655 34444 77777777777777777766555 34556666666666665 345566666665
Q ss_pred CC
Q 045877 768 KC 769 (801)
Q Consensus 768 ~c 769 (801)
++
T Consensus 390 ~N 391 (844)
T 3j0a_A 390 GN 391 (844)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=3.7e-27 Score=286.77 Aligned_cols=261 Identities=16% Similarity=0.075 Sum_probs=131.4
Q ss_pred hhhhccccccccccchhhcc-hhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccch
Q 045877 418 EFEKIKKLFNFSLSLEEIEN-KAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIEST 496 (801)
Q Consensus 418 ~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 496 (801)
.|..+++|++|+|++|.+.+ +.+..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|.+++.
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~---------- 112 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA---------- 112 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSC----------
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcc----------
Confidence 45555566666666553332 2355555566666666666666555555566666666666666655321
Q ss_pred hhhH--hhcCCcCCceEeecCCCCCccCc-hhhcCCCCCCEEeccCCCCCCCCcccccCC--CCCCEEcccCCccccCCC
Q 045877 497 DYLK--GLKNMKELRLLSLQGMSGIQELP-SEISYLTSLEILDLRACYNLDKLPDEIGKL--KSLTHLDISECFLLDGIP 571 (801)
Q Consensus 497 ~lp~--~l~~l~~L~~L~Ls~n~~~~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L--~~L~~L~Ls~n~l~~~~p 571 (801)
++. .|.++++|++|+|++|.+.+..+ ..|++|++|++|+|++|.+.+..+..+..+ ++|++|++++|.+.+..|
T Consensus 113 -~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~ 191 (844)
T 3j0a_A 113 -VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191 (844)
T ss_dssp -CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCC
T ss_pred -cccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccc
Confidence 122 24555555555555554443322 345555555555555555555445444444 444444444444444444
Q ss_pred cccCCCCc------ccccccc-----------------------------------------------------------
Q 045877 572 KKLSLLSK------LQVLKGF----------------------------------------------------------- 586 (801)
Q Consensus 572 ~~~~~L~~------L~~L~~~----------------------------------------------------------- 586 (801)
..++.+.+ |+.|+..
T Consensus 192 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L 271 (844)
T 3j0a_A 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271 (844)
T ss_dssp CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEE
T ss_pred cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEE
Confidence 33333332 3333300
Q ss_pred cccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccch
Q 045877 587 VISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDN 666 (801)
Q Consensus 587 ~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 666 (801)
.+++|. + ....+..|..+++|+.|+|++|.+.... +..|.++++|+.|+|++|.+.+..+..+ ...
T Consensus 272 ~Ls~n~-----l-~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------~~l 337 (844)
T 3j0a_A 272 DLSHGF-----V-FSLNSRVFETLKDLKVLNLAYNKINKIA--DEAFYGLDNLQVLNLSYNLLGELYSSNF------YGL 337 (844)
T ss_dssp ECTTCC-----C-CEECSCCSSSCCCCCEEEEESCCCCEEC--TTTTTTCSSCCEEEEESCCCSCCCSCSC------SSC
T ss_pred ECCCCc-----c-cccChhhhhcCCCCCEEECCCCcCCCCC--hHHhcCCCCCCEEECCCCCCCccCHHHh------cCC
Confidence 033333 0 0112344566666677777766666554 4566666677777777776665443322 112
Q ss_pred hchhhhhcccccccccccc---cCCCccEEEccCCCCCCC
Q 045877 667 FFIKTLTKFRTRVTERSQH---VESKLEKLDFQCFPDEKL 703 (801)
Q Consensus 667 ~~l~~L~~~~~~l~~~~~~---~~~~L~~L~L~~n~~~~l 703 (801)
..++.|+...+.+....+. ..++|+.|+|++|.+..+
T Consensus 338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377 (844)
T ss_dssp TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence 2344444444433322211 125666666666665543
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=6.5e-28 Score=280.79 Aligned_cols=148 Identities=20% Similarity=0.144 Sum_probs=120.3
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...|..+++|++|+|++|+|+++.+..|..+++|++|.+.+|.+..+++..|.++++|++|+|++|.++...
T Consensus 45 ~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~-------- 116 (570)
T 2z63_A 45 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-------- 116 (570)
T ss_dssp TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST--------
T ss_pred hhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCC--------
Confidence 346888999999999999999998999999999999999999999888889999999999999999885421
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCc-cCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCC----CEEcccCCccccCC
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQ-ELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSL----THLDISECFLLDGI 570 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L----~~L~Ls~n~l~~~~ 570 (801)
+..++++++|++|+|++|.+.+ .+|..|+++++|++|++++|.+.+..+..++.+++| ++|++++|.+.+..
T Consensus 117 ---~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~ 193 (570)
T 2z63_A 117 ---NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (570)
T ss_dssp ---TCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEEC
T ss_pred ---CccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecC
Confidence 1247888999999999886655 478889999999999999987777667777777777 77777777766544
Q ss_pred Cccc
Q 045877 571 PKKL 574 (801)
Q Consensus 571 p~~~ 574 (801)
|..+
T Consensus 194 ~~~~ 197 (570)
T 2z63_A 194 PGAF 197 (570)
T ss_dssp TTTT
T ss_pred HHHh
Confidence 4433
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=1.5e-26 Score=251.88 Aligned_cols=303 Identities=21% Similarity=0.193 Sum_probs=245.8
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...+..+++|+.|++++|.+..+. .+..+++|++|.+.+|.+..+++ |.++++|++|+|++|.++.
T Consensus 37 ~~~~~~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~---------- 102 (347)
T 4fmz_A 37 VVTQEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD---------- 102 (347)
T ss_dssp EECHHHHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC----------
T ss_pred cccchhcccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC----------
Confidence 355678999999999999998764 37789999999999999998766 9999999999999998843
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccC
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLS 575 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~ 575 (801)
+ ..+..+++|++|+|++|.+ ..++. +..+++|++|++++|.....++. +..+++|++|++++|.+.+..+ +.
T Consensus 103 --~-~~~~~l~~L~~L~l~~n~i-~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~ 174 (347)
T 4fmz_A 103 --I-SALQNLTNLRELYLNEDNI-SDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IA 174 (347)
T ss_dssp --C-GGGTTCTTCSEEECTTSCC-CCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GG
T ss_pred --c-hHHcCCCcCCEEECcCCcc-cCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hc
Confidence 2 3589999999999999854 45555 89999999999999977766654 8999999999999999765443 88
Q ss_pred CCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCC
Q 045877 576 LLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKST 655 (801)
Q Consensus 576 ~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 655 (801)
.+++|++|+ +++|. ....+ .+..+++|+.|++++|.+.... .+..+++|+.|++++|.+.+..+
T Consensus 175 ~l~~L~~L~---l~~n~-------l~~~~-~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~L~~L~l~~n~l~~~~~- 238 (347)
T 4fmz_A 175 NLTDLYSLS---LNYNQ-------IEDIS-PLASLTSLHYFTAYVNQITDIT----PVANMTRLNSLKIGNNKITDLSP- 238 (347)
T ss_dssp GCTTCSEEE---CTTSC-------CCCCG-GGGGCTTCCEEECCSSCCCCCG----GGGGCTTCCEEECCSSCCCCCGG-
T ss_pred cCCCCCEEE---ccCCc-------ccccc-cccCCCccceeecccCCCCCCc----hhhcCCcCCEEEccCCccCCCcc-
Confidence 899999998 88887 33333 3889999999999999887654 28899999999999998875321
Q ss_pred CCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccc
Q 045877 656 KPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWET 735 (801)
Q Consensus 656 ~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~ 735 (801)
... .++|+.|++++|.+..++ .+. .+++|++|++++|.+++++. +
T Consensus 239 ---------------------------~~~-l~~L~~L~l~~n~l~~~~-~~~--~l~~L~~L~l~~n~l~~~~~--~-- 283 (347)
T 4fmz_A 239 ---------------------------LAN-LSQLTWLEIGTNQISDIN-AVK--DLTKLKMLNVGSNQISDISV--L-- 283 (347)
T ss_dssp ---------------------------GTT-CTTCCEEECCSSCCCCCG-GGT--TCTTCCEEECCSSCCCCCGG--G--
T ss_pred ---------------------------hhc-CCCCCEEECCCCccCCCh-hHh--cCCCcCEEEccCCccCCChh--h--
Confidence 112 379999999999988875 444 89999999999999988732 3
Q ss_pred cceecccccccccccccccc-------CcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 736 VKVLRLKYLNELKIDWKGLQ-------ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 736 L~~l~L~~L~~L~l~~n~l~-------~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
..+++|+.|++++|.+. +.+++|++|++.+|+ ++.++. +..+++|++||+++|+++
T Consensus 284 ---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~----~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 284 ---NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP----LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ---GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG----GGGCTTCSEESSSCC---
T ss_pred ---cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC----hhhhhccceeehhhhccc
Confidence 34667777788777765 457899999999985 665543 678999999999999986
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=7.9e-27 Score=277.65 Aligned_cols=284 Identities=16% Similarity=0.076 Sum_probs=198.1
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...|.++++|++|+|++|+|+++.+..|..+++|++|.+.+|.+..+++..|.++++|++|+|++|.++...
T Consensus 42 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-------- 113 (680)
T 1ziw_A 42 AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK-------- 113 (680)
T ss_dssp GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC--------
T ss_pred HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccC--------
Confidence 345888899999999999999998888989999999999999998888888999999999999999885321
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCccccc--CCCCCCEEcccCCccccCCCcc
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIG--KLKSLTHLDISECFLLDGIPKK 573 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~--~L~~L~~L~Ls~n~l~~~~p~~ 573 (801)
+..|+++++|++|+|++|.+.+..|..++++++|++|+|++|.+.+..+..+. .+++|++|++++|.+.+..|..
T Consensus 114 ---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 190 (680)
T 1ziw_A 114 ---NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190 (680)
T ss_dssp ---SCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG
T ss_pred ---hhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh
Confidence 45688899999999999887777778888899999999999877776666554 4588999999999888877777
Q ss_pred cCCCCccccccc------------------------ccccCCcchhhhhhcccCcccccCCcc--CCeeEeecccccccc
Q 045877 574 LSLLSKLQVLKG------------------------FVISDHAEDDRRWKRWCSLKDLEKLEH--LRKLTININSEKFQT 627 (801)
Q Consensus 574 ~~~L~~L~~L~~------------------------~~l~~n~~~~~~~~~~~~~~~l~~L~~--L~~L~L~~n~~~~~~ 627 (801)
+..+.+|+.|+. ..+++|. + ....+..+..++. |+.|++++|.+....
T Consensus 191 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~-----l-~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-----L-STTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC-----C-CEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc-----c-cccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 777666655541 0033332 0 1112345555554 888888888777665
Q ss_pred cChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccc---------cccc---cccccCCCccEEEc
Q 045877 628 ENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRT---------RVTE---RSQHVESKLEKLDF 695 (801)
Q Consensus 628 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~---------~l~~---~~~~~~~~L~~L~L 695 (801)
+..|..+++|+.|++++|.+.+..+..+. ....++.|+...+ .++. ......++|+.|++
T Consensus 265 --~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l 336 (680)
T 1ziw_A 265 --NDSFAWLPQLEYFFLEYNNIQHLFSHSLH------GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336 (680)
T ss_dssp --TTTTTTCTTCCEEECCSCCBSEECTTTTT------TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEEC
T ss_pred --cccccCcccccEeeCCCCccCccChhhhc------CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEEC
Confidence 56677788888888888877765443320 1122222222211 1111 11112367888888
Q ss_pred cCCCCCCCCcccCCCCCCCccEEEeeCCcC
Q 045877 696 QCFPDEKLPSWVHPYSFKNLKNLYIRGGRL 725 (801)
Q Consensus 696 ~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l 725 (801)
++|.+..++...+ ..+++|++|+|++|.+
T Consensus 337 ~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 337 EDNDIPGIKSNMF-TGLINLKYLSLSNSFT 365 (680)
T ss_dssp CSCCBCCCCTTTT-TTCTTCCEEECTTCBS
T ss_pred CCCccCCCChhHh-ccccCCcEEECCCCch
Confidence 8877766654432 3777777777777753
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=4.3e-27 Score=260.55 Aligned_cols=302 Identities=19% Similarity=0.116 Sum_probs=233.3
Q ss_pred hccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhH
Q 045877 421 KIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLK 500 (801)
Q Consensus 421 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~ 500 (801)
.+.++++|++++|.+..+++..|..+++|++|.+.+|.+..+++..|.++++|++|+|++|.++.. .+.
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------~~~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-----------PPH 111 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-----------CTT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-----------CHH
Confidence 568899999999999999888899999999999999999998888999999999999999998542 256
Q ss_pred hhcCCcCCceEeecCCCCCccCchh-hcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCc
Q 045877 501 GLKNMKELRLLSLQGMSGIQELPSE-ISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSK 579 (801)
Q Consensus 501 ~l~~l~~L~~L~Ls~n~~~~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~ 579 (801)
.|.++++|++|+|++|.+. .+|.. ++++++|++|+|++|.+.+..|..+..+++|++|++++|.+.+. .++.+++
T Consensus 112 ~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~ 187 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPS 187 (390)
T ss_dssp TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTT
T ss_pred HhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccc
Confidence 6889999999999998554 56654 68899999999999988777778899999999999999987754 3566778
Q ss_pred ccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCC
Q 045877 580 LQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEP 659 (801)
Q Consensus 580 L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 659 (801)
|+.|+ ++.|. ...+....+|+.|++++|.+..... ...++|+.|++++|.+.+..
T Consensus 188 L~~L~---l~~n~-----------l~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~l~~~~------ 242 (390)
T 3o6n_A 188 LFHAN---VSYNL-----------LSTLAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTDTA------ 242 (390)
T ss_dssp CSEEE---CCSSC-----------CSEEECCSSCSEEECCSSCCCEEEC-----CCCSSCCEEECCSSCCCCCG------
T ss_pred cceee---ccccc-----------ccccCCCCcceEEECCCCeeeeccc-----cccccccEEECCCCCCcccH------
Confidence 88887 77766 2334556688999999998876531 22468999999998877531
Q ss_pred CCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCC-CcccCCCCCCCccEEEeeCCcCCCCCCCcccccce
Q 045877 660 QTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKL-PSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKV 738 (801)
Q Consensus 660 ~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~l-p~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~ 738 (801)
.... .++|+.|+|++|.+..+ |..+. .+++|++|+|++|.+++++...
T Consensus 243 ----------------------~l~~-l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~------ 291 (390)
T 3o6n_A 243 ----------------------WLLN-YPGLVEVDLSYNELEKIMYHPFV--KMQRLERLYISNNRLVALNLYG------ 291 (390)
T ss_dssp ----------------------GGGG-CTTCSEEECCSSCCCEEESGGGT--TCSSCCEEECCSSCCCEEECSS------
T ss_pred ----------------------HHcC-CCCccEEECCCCcCCCcChhHcc--ccccCCEEECCCCcCcccCccc------
Confidence 0111 36888888888877765 55555 7888888888888887765421
Q ss_pred ecccccccccccccccc------CcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 739 LRLKYLNELKIDWKGLQ------ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 739 l~L~~L~~L~l~~n~l~------~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
..+++|+.|++++|.+. +.+++|++|++.++ +++.++ +..+++|+.|++++|++.
T Consensus 292 ~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~-----~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 292 QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLK-----LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS-CCCCCC-----CCTTCCCSEEECCSSCEE
T ss_pred CCCCCCCEEECCCCcceecCccccccCcCCEEECCCC-ccceeC-----chhhccCCEEEcCCCCcc
Confidence 23556666666666654 34678888888887 466654 456788999999998875
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=5.4e-27 Score=275.25 Aligned_cols=347 Identities=14% Similarity=0.053 Sum_probs=245.1
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
+++++|+|++|+|+++.+..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|.++.. .|..|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-----------~p~~~ 100 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF-----------SPGSF 100 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC-----------CTTSS
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc-----------Chhhc
Confidence 6899999999999999999999999999999999999999999999999999999999998542 37889
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCC-CCcccccCCCCCCEEcccCCccccCCCcccCCCCccc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLD-KLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQ 581 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~-~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ 581 (801)
+++++|++|+|++|.+.+..+..++++++|++|+|++|.+.+ .+|..++++++|++|++++|.+.+..|..++.+.+|+
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccc
Confidence 999999999999997766666889999999999999998775 6799999999999999999999988888888888776
Q ss_pred ----ccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCC
Q 045877 582 ----VLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKP 657 (801)
Q Consensus 582 ----~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 657 (801)
+|+ +++|. ....+.......+|+.|++++|.+.+.. .+..+.++++|+.+++..+.+.+......
T Consensus 181 ~~l~~L~---l~~n~-------l~~~~~~~~~~~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 181 QVNLSLD---MSLNP-------IDFIQDQAFQGIKLHELTLRGNFNSSNI-MKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp TCCCEEE---CTTCC-------CCEECTTTTTTCEEEEEEEESCCSCHHH-HHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred cccceee---ccCCC-------cceeCcccccCceeeeeeccCCccchhH-HHHHhccccccccccccccccccCCcccc
Confidence 566 77877 4445555455558999999999876322 16778999999999998776554321110
Q ss_pred CCCCCccchhchhh-----hhc-----ccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCC
Q 045877 658 EPQTGRKDNFFIKT-----LTK-----FRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNS 727 (801)
Q Consensus 658 ~~~~~~~~~~~l~~-----L~~-----~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~ 727 (801)
+.......+.. +.. +...++. ... .++|+.|++++|.+..+| ++. .+++|++|++++|.+..
T Consensus 250 ---~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~-l~~L~~L~l~~~~~~~l~-~l~--~~~~L~~L~l~~n~l~~ 321 (606)
T 3vq2_A 250 ---FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHC-LANVSAMSLAGVSIKYLE-DVP--KHFKWQSLSIIRCQLKQ 321 (606)
T ss_dssp ---CCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGG-GTTCSEEEEESCCCCCCC-CCC--TTCCCSEEEEESCCCSS
T ss_pred ---cChHHhhhhhhccHhheeccccccccccccc-ccc-CCCCCEEEecCccchhhh-hcc--ccccCCEEEcccccCcc
Confidence 00000111111 111 0111111 111 256777777777776666 444 67777777777777655
Q ss_pred CCCCcccccceec--------------ccccccccccccccc---------CcCCCCceeeccCC------------CCC
Q 045877 728 LEGSEWETVKVLR--------------LKYLNELKIDWKGLQ---------ELFPKLEYLEKFKC------------HKV 772 (801)
Q Consensus 728 ~~~~~f~~L~~l~--------------L~~L~~L~l~~n~l~---------~~~p~L~~L~l~~c------------~~L 772 (801)
++.-.+++|+.++ +++|+.|++++|.++ +.+++|++|++.+| ++|
T Consensus 322 lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L 401 (606)
T 3vq2_A 322 FPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEEL 401 (606)
T ss_dssp CCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTC
T ss_pred cccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCC
Confidence 5433344444443 345566666666654 24566777766554 333
Q ss_pred cccCCCCC---------cccccCCcceEeCCCcccc
Q 045877 773 TLCPCDGY---------GIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 773 ~~lp~~~n---------~i~~~~~L~~LdlS~~~~~ 799 (801)
+.+.+.+| .+.++++|++|++++|++.
T Consensus 402 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 437 (606)
T 3vq2_A 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437 (606)
T ss_dssp CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE
T ss_pred CeeECCCCccCCccChhhhhccccCCEEECcCCCCC
Confidence 33333333 2334566666666666543
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=2.1e-27 Score=270.33 Aligned_cols=286 Identities=17% Similarity=0.108 Sum_probs=226.4
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...|..+++|++|+|++|+|+++.+..|..+++|++|.+.+|.+..+++..|.++++|++|+|++|.++.
T Consensus 49 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~---------- 118 (477)
T 2id5_A 49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI---------- 118 (477)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE----------
T ss_pred HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcccc----------
Confidence 4578888999999999999999888889899999999999999988888888999999999999998853
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccC
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLS 575 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~ 575 (801)
..+..|..+++|++|+|++|.+.+..+..|.++++|++|+|++|.+.+..+..+.++++|++|++++|.+.+..+..|.
T Consensus 119 -~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~ 197 (477)
T 2id5_A 119 -LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK 197 (477)
T ss_dssp -ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSC
T ss_pred -CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcc
Confidence 2356788889999999999877777777888999999999999877666666788899999999999988877777888
Q ss_pred CCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCC
Q 045877 576 LLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKST 655 (801)
Q Consensus 576 ~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 655 (801)
.+++|+.|+ ++++. .....+..+....+|+.|+|++|.+.... ...+..+++|+.|+|++|.+.+....
T Consensus 198 ~l~~L~~L~---l~~~~------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (477)
T 2id5_A 198 RLYRLKVLE---ISHWP------YLDTMTPNCLYGLNLTSLSITHCNLTAVP--YLAVRHLVYLRFLNLSYNPISTIEGS 266 (477)
T ss_dssp SCTTCCEEE---EECCT------TCCEECTTTTTTCCCSEEEEESSCCCSCC--HHHHTTCTTCCEEECCSSCCCEECTT
T ss_pred cCcccceee---CCCCc------cccccCcccccCccccEEECcCCcccccC--HHHhcCccccCeeECCCCcCCccChh
Confidence 888999888 66654 12233444555568999999999887654 56788889999999999887754332
Q ss_pred CCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCC-CcccCCCCCCCccEEEeeCCcCCCCCCCccc
Q 045877 656 KPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKL-PSWVHPYSFKNLKNLYIRGGRLNSLEGSEWE 734 (801)
Q Consensus 656 ~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~l-p~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~ 734 (801)
.+ .. .++|+.|+|++|.+..+ |..+. .+++|++|+|++|.|+++++..|
T Consensus 267 ~~--------------------------~~-l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~- 316 (477)
T 2id5_A 267 ML--------------------------HE-LLRLQEIQLVGGQLAVVEPYAFR--GLNYLRVLNVSGNQLTTLEESVF- 316 (477)
T ss_dssp SC--------------------------TT-CTTCCEEECCSSCCSEECTTTBT--TCTTCCEEECCSSCCSCCCGGGB-
T ss_pred hc--------------------------cc-cccCCEEECCCCccceECHHHhc--CcccCCEEECCCCcCceeCHhHc-
Confidence 11 11 36889999998887776 44444 88999999999999988887666
Q ss_pred ccceeccccccccccccccccCc
Q 045877 735 TVKVLRLKYLNELKIDWKGLQEL 757 (801)
Q Consensus 735 ~L~~l~L~~L~~L~l~~n~l~~~ 757 (801)
-.+.+|+.|++++|.+...
T Consensus 317 ----~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 317 ----HSVGNLETLILDSNPLACD 335 (477)
T ss_dssp ----SCGGGCCEEECCSSCEECS
T ss_pred ----CCCcccCEEEccCCCccCc
Confidence 3567778888888887643
No 23
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=3.9e-26 Score=257.49 Aligned_cols=307 Identities=13% Similarity=0.061 Sum_probs=217.0
Q ss_pred hhhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCccccc
Q 045877 415 KAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIE 494 (801)
Q Consensus 415 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 494 (801)
....++++++|++|++++|+|++.. .+..+++|++|.+.+|.+..++ |..+++|++|+|++|.+++
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~--------- 99 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTN--------- 99 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSC---------
T ss_pred cccChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCce---------
Confidence 3457889999999999999999873 5888999999999999998873 8899999999999999853
Q ss_pred chhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCccc
Q 045877 495 STDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKL 574 (801)
Q Consensus 495 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~ 574 (801)
++ ++.+++|++|+|++|.+.+ +| ++.+++|++|++++|.+.+ ++ ++.+++|++|++++|...+.+ .+
T Consensus 100 ---~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~ 166 (457)
T 3bz5_A 100 ---LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DV 166 (457)
T ss_dssp ---CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CC
T ss_pred ---ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--cc
Confidence 22 7889999999999986554 54 8899999999999997666 43 888999999999999766666 47
Q ss_pred CCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCC
Q 045877 575 SLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKS 654 (801)
Q Consensus 575 ~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 654 (801)
+.+++|++|+ +++|. ...++ +..+++|+.|++++|.+.+. .+..+++|+.|++++|.+.+..
T Consensus 167 ~~l~~L~~L~---ls~n~-------l~~l~--l~~l~~L~~L~l~~N~l~~~-----~l~~l~~L~~L~Ls~N~l~~ip- 228 (457)
T 3bz5_A 167 TPQTQLTTLD---CSFNK-------ITELD--VSQNKLLNRLNCDTNNITKL-----DLNQNIQLTFLDCSSNKLTEID- 228 (457)
T ss_dssp TTCTTCCEEE---CCSSC-------CCCCC--CTTCTTCCEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSCCC-
T ss_pred ccCCcCCEEE---CCCCc-------cceec--cccCCCCCEEECcCCcCCee-----ccccCCCCCEEECcCCcccccC-
Confidence 8889999998 88887 44443 78889999999999988764 3678889999999999888642
Q ss_pred CCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCccc
Q 045877 655 TKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWE 734 (801)
Q Consensus 655 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~ 734 (801)
+ .. .++|+.|++++|.+..+|.. .+++|+.|++++|.++.+......
T Consensus 229 --~--------------------------~~-l~~L~~L~l~~N~l~~~~~~----~l~~L~~L~l~~n~L~~L~l~~n~ 275 (457)
T 3bz5_A 229 --V--------------------------TP-LTQLTYFDCSVNPLTELDVS----TLSKLTTLHCIQTDLLEIDLTHNT 275 (457)
T ss_dssp --C--------------------------TT-CTTCSEEECCSSCCSCCCCT----TCTTCCEEECTTCCCSCCCCTTCT
T ss_pred --c--------------------------cc-cCCCCEEEeeCCcCCCcCHH----HCCCCCEEeccCCCCCEEECCCCc
Confidence 1 01 24666666666666655521 455555555555554444321111
Q ss_pred ccc---eeccccccccccccccccC----cCCCCceeeccCCCCCcccCCCCCc-----ccccCCcceEeCCCcccc
Q 045877 735 TVK---VLRLKYLNELKIDWKGLQE----LFPKLEYLEKFKCHKVTLCPCDGYG-----IWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 735 ~L~---~l~L~~L~~L~l~~n~l~~----~~p~L~~L~l~~c~~L~~lp~~~n~-----i~~~~~L~~LdlS~~~~~ 799 (801)
.+. ...+.+|+.|+++.|...+ ..++|+.|++.+|++|+.+.+..|. +.++++|+.||+++|++.
T Consensus 276 ~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 276 QLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp TCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCSEEECCSSCCC
T ss_pred cCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccccccCCcCcEEECCCCCCC
Confidence 111 1133455555555554432 2334566666666666666555552 335566666666666653
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.8e-27 Score=269.05 Aligned_cols=319 Identities=16% Similarity=0.128 Sum_probs=213.1
Q ss_pred hhhhhhccccccccccchhhcc-hhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIEN-KAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIE 494 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 494 (801)
...|.++++|++|+|++|.+.+ +.+..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|.+++
T Consensus 47 ~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------- 117 (455)
T 3v47_A 47 ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDG--------- 117 (455)
T ss_dssp TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBT---------
T ss_pred hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCc---------
Confidence 4568899999999999999974 456789999999999999999999999999999999999999999853
Q ss_pred chhhhHh--hcCCcCCceEeecCCCCCccCchh-hcCCCCCCEEeccCCCCCCCCcccccCC--CCCCEEcccCCccccC
Q 045877 495 STDYLKG--LKNMKELRLLSLQGMSGIQELPSE-ISYLTSLEILDLRACYNLDKLPDEIGKL--KSLTHLDISECFLLDG 569 (801)
Q Consensus 495 ~~~lp~~--l~~l~~L~~L~Ls~n~~~~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~~~~L--~~L~~L~Ls~n~l~~~ 569 (801)
..+.. +..+++|++|+|++|.+.+..|.. ++++++|++|+|++|.+.+..|..+..+ .+|++|++++|.+.+.
T Consensus 118 --~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~ 195 (455)
T 3v47_A 118 --AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195 (455)
T ss_dssp --HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTC
T ss_pred --cccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCccccc
Confidence 23444 889999999999999887777766 8999999999999998888888777665 4555666665555433
Q ss_pred CCcc--------cCCCCcccccccccccCCcchh---hhhh-----------------cc-----------cCccccc--
Q 045877 570 IPKK--------LSLLSKLQVLKGFVISDHAEDD---RRWK-----------------RW-----------CSLKDLE-- 608 (801)
Q Consensus 570 ~p~~--------~~~L~~L~~L~~~~l~~n~~~~---~~~~-----------------~~-----------~~~~~l~-- 608 (801)
.+.. +..+++|++|+ +++|.... ..+. .. .....+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~L~~L~---Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (455)
T 3v47_A 196 NEYWLGWEKCGNPFKNTSITTLD---LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272 (455)
T ss_dssp STTCTTHHHHCCTTTTCEEEEEE---CTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGG
T ss_pred chhhccccccccccccceeeeEe---cCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccc
Confidence 2221 22344555555 44443100 0000 00 0001111
Q ss_pred CCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhccccccccccc---c
Q 045877 609 KLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQ---H 685 (801)
Q Consensus 609 ~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~---~ 685 (801)
..++|+.|++++|.+.... +..+..+++|+.|++++|.+.+..+..+ .....++.|+...+.+....+ .
T Consensus 273 ~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~Ls~N~l~~~~~~~~~ 344 (455)
T 3v47_A 273 EASGVKTCDLSKSKIFALL--KSVFSHFTDLEQLTLAQNEINKIDDNAF------WGLTHLLKLNLSQNFLGSIDSRMFE 344 (455)
T ss_dssp TTSCCCEEECCSSCCCEEC--TTTTTTCTTCCEEECTTSCCCEECTTTT------TTCTTCCEEECCSSCCCEECGGGGT
T ss_pred cccCceEEEecCccccccc--hhhcccCCCCCEEECCCCcccccChhHh------cCcccCCEEECCCCccCCcChhHhc
Confidence 1257888888888887766 6678888888888888888876544332 012233444444443322211 1
Q ss_pred cCCCccEEEccCCCCCCC-CcccCCCCCCCccEEEeeCCcCCCCCCCcccccceeccccccccccccccccCcCCCCce
Q 045877 686 VESKLEKLDFQCFPDEKL-PSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQELFPKLEY 763 (801)
Q Consensus 686 ~~~~L~~L~L~~n~~~~l-p~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~~~~p~L~~ 763 (801)
-.++|+.|+|++|.+..+ |.++. .+++|++|+|++|+|+++++..| -.+++|+.|++++|.+.+.+|.+..
T Consensus 345 ~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~l~~N~l~~~~~~~~~ 416 (455)
T 3v47_A 345 NLDKLEVLDLSYNHIRALGDQSFL--GLPNLKELALDTNQLKSVPDGIF-----DRLTSLQKIWLHTNPWDCSCPRIDY 416 (455)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCSCCCTTTT-----TTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred CcccCCEEECCCCcccccChhhcc--ccccccEEECCCCccccCCHhHh-----ccCCcccEEEccCCCcccCCCcchH
Confidence 125677777777666555 44444 66777777777777766665544 2455666666677766666665443
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=9.7e-27 Score=272.21 Aligned_cols=303 Identities=18% Similarity=0.097 Sum_probs=227.8
Q ss_pred hccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhH
Q 045877 421 KIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLK 500 (801)
Q Consensus 421 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~ 500 (801)
.+.+++.+++++|.+..+++..|..+++|++|.+.+|.+..+++..|.++++|++|+|++|.+++. .+.
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------~~~ 117 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-----------PPH 117 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-----------CTT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-----------CHH
Confidence 467888999999999999988899999999999999999998888999999999999999988643 255
Q ss_pred hhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcc
Q 045877 501 GLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL 580 (801)
Q Consensus 501 ~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L 580 (801)
.|+++++|++|+|++|.+.+..+..|+++++|++|+|++|.+.+..|..|+.+++|++|++++|.+.+. .++.+++|
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L 194 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSL 194 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTC
T ss_pred HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhh
Confidence 678999999999999865543334568999999999999988888888899999999999999987754 25567778
Q ss_pred cccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCC
Q 045877 581 QVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQ 660 (801)
Q Consensus 581 ~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 660 (801)
+.|+ +++|. ...+....+|+.|++++|.+..... . ..++|+.|+|++|.+.+..
T Consensus 195 ~~L~---l~~n~-----------l~~l~~~~~L~~L~ls~n~l~~~~~---~--~~~~L~~L~L~~n~l~~~~------- 248 (597)
T 3oja_B 195 FHAN---VSYNL-----------LSTLAIPIAVEELDASHNSINVVRG---P--VNVELTILKLQHNNLTDTA------- 248 (597)
T ss_dssp SEEE---CCSSC-----------CSEEECCTTCSEEECCSSCCCEEEC---S--CCSCCCEEECCSSCCCCCG-------
T ss_pred hhhh---cccCc-----------cccccCCchhheeeccCCccccccc---c--cCCCCCEEECCCCCCCCCh-------
Confidence 8887 77766 2345566788899999888765541 1 1257888999888877531
Q ss_pred CCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCC-CcccCCCCCCCccEEEeeCCcCCCCCCCccccccee
Q 045877 661 TGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKL-PSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVL 739 (801)
Q Consensus 661 ~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~l-p~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l 739 (801)
.... .++|+.|+|++|.+..+ |..+. .+++|+.|+|++|.+++++... .
T Consensus 249 ---------------------~l~~-l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~------~ 298 (597)
T 3oja_B 249 ---------------------WLLN-YPGLVEVDLSYNELEKIMYHPFV--KMQRLERLYISNNRLVALNLYG------Q 298 (597)
T ss_dssp ---------------------GGGG-CTTCSEEECCSSCCCEEESGGGT--TCSSCCEEECTTSCCCEEECSS------S
T ss_pred ---------------------hhcc-CCCCCEEECCCCccCCCCHHHhc--CccCCCEEECCCCCCCCCCccc------c
Confidence 0111 25788888888777655 45555 7888888888888877764421 2
Q ss_pred cccccccccccccccc------CcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 740 RLKYLNELKIDWKGLQ------ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 740 ~L~~L~~L~l~~n~l~------~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
.+++|+.|++++|.+. +.+++|+.|++.+| ++..++ +..+++|+.|++++|.+.
T Consensus 299 ~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~-----~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 299 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLK-----LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS-CCCCCC-----CCTTCCCSEEECCSSCEE
T ss_pred cCCCCcEEECCCCCCCccCcccccCCCCCEEECCCC-CCCCcC-----hhhcCCCCEEEeeCCCCC
Confidence 3456666666666654 34677888888776 455554 456678888888888764
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=7.8e-27 Score=268.66 Aligned_cols=144 Identities=17% Similarity=0.127 Sum_probs=122.7
Q ss_pred ccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCC
Q 045877 426 FNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNM 505 (801)
Q Consensus 426 ~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l 505 (801)
+++++++|+|+.++...+ ++++.|.+.+|.+..+++..|.++++|++|+|++|++++ ..|..|.++
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l 68 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY-----------LDISVFKFN 68 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE-----------EEGGGGTTC
T ss_pred ceEecCCCCccccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCC-----------cChHHhhcc
Confidence 468999999997654433 799999999999999999999999999999999999853 337889999
Q ss_pred cCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCC-CCcccccCCCCCCEEcccCCccccCCCcccCCCCcc--cc
Q 045877 506 KELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLD-KLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL--QV 582 (801)
Q Consensus 506 ~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~-~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L--~~ 582 (801)
++|++|+|++|.+ ..+|.. .+++|++|+|++|.+.+ .+|..|+++++|++|++++|.+.+ ..+..+++| +.
T Consensus 69 ~~L~~L~Ls~N~l-~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~ 142 (520)
T 2z7x_B 69 QELEYLDLSHNKL-VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISK 142 (520)
T ss_dssp TTCCEEECCSSCC-CEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEE
T ss_pred cCCCEEecCCCce-eecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeE
Confidence 9999999999855 578876 89999999999998876 578999999999999999999876 346666777 77
Q ss_pred cccccccCCc
Q 045877 583 LKGFVISDHA 592 (801)
Q Consensus 583 L~~~~l~~n~ 592 (801)
|+ ++.|.
T Consensus 143 L~---l~~n~ 149 (520)
T 2z7x_B 143 VL---LVLGE 149 (520)
T ss_dssp EE---EEECT
T ss_pred EE---eeccc
Confidence 77 66554
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=5.1e-27 Score=272.06 Aligned_cols=315 Identities=18% Similarity=0.175 Sum_probs=200.4
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...|..+++|++|+|++|+|++..+..|..+++|++|++.+|.+..+++..|.++++|++|+|++|.++...
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------- 114 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG-------- 114 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC--------
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccc--------
Confidence 356888999999999999999999999999999999999999999999998999999999999999986432
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCc-hhhcCCCCCCEEeccCCCCCCCCcccccC----------------------
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELP-SEISYLTSLEILDLRACYNLDKLPDEIGK---------------------- 552 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~---------------------- 552 (801)
.+..+.++++|++|+|++|..++.+| ..++++++|++|++++|.+.+..|..++.
T Consensus 115 --~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 192 (549)
T 2z81_A 115 --VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFA 192 (549)
T ss_dssp --SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHH
T ss_pred --hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhH
Confidence 23456667777777777765555554 45666777777777776666555554443
Q ss_pred --CCCCCEEcccCCccccCC------------------------------------------------------------
Q 045877 553 --LKSLTHLDISECFLLDGI------------------------------------------------------------ 570 (801)
Q Consensus 553 --L~~L~~L~Ls~n~l~~~~------------------------------------------------------------ 570 (801)
+++|++|++++|.+.+..
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 272 (549)
T 2z81_A 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272 (549)
T ss_dssp HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCC
T ss_pred hhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccccc
Confidence 455666666666654421
Q ss_pred -----------------------------------------------------Cccc-CCCCcccccccccccCCcchhh
Q 045877 571 -----------------------------------------------------PKKL-SLLSKLQVLKGFVISDHAEDDR 596 (801)
Q Consensus 571 -----------------------------------------------------p~~~-~~L~~L~~L~~~~l~~n~~~~~ 596 (801)
|..+ ..+++|++|+ +++|.
T Consensus 273 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~---Ls~N~---- 345 (549)
T 2z81_A 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLD---LSENL---- 345 (549)
T ss_dssp TTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEE---CCSSC----
T ss_pred chhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEE---ccCCc----
Confidence 0000 1122222222 22222
Q ss_pred hhhccc-C---cccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhh
Q 045877 597 RWKRWC-S---LKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTL 672 (801)
Q Consensus 597 ~~~~~~-~---~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L 672 (801)
... . +..++.+++|++|++++|.+.........+..+++|+.|++++|.+.+.... + .....++.|
T Consensus 346 ---l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~------~~~~~L~~L 415 (549)
T 2z81_A 346 ---MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-C------QWPEKMRFL 415 (549)
T ss_dssp ---CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSC-C------CCCTTCCEE
T ss_pred ---cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChh-h------cccccccEE
Confidence 000 0 1123444455555555554443220013456666777777777766643211 1 112445566
Q ss_pred hcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceeccccccccccccc
Q 045877 673 TKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWK 752 (801)
Q Consensus 673 ~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n 752 (801)
+...+.+..+....+++|+.|+|++|.+..++ . .+++|++|+|++|+|+.++.. ..+++|+.|++++|
T Consensus 416 ~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~---~--~l~~L~~L~Ls~N~l~~ip~~-------~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 416 NLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS---L--FLPRLQELYISRNKLKTLPDA-------SLFPVLLVMKISRN 483 (549)
T ss_dssp ECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC---C--CCTTCCEEECCSSCCSSCCCG-------GGCTTCCEEECCSS
T ss_pred ECCCCCcccccchhcCCceEEECCCCChhhhc---c--cCChhcEEECCCCccCcCCCc-------ccCccCCEEecCCC
Confidence 66666665555555567888888888776553 2 778889999999988876652 24678889999999
Q ss_pred cccCc-------CCCCceeeccCC
Q 045877 753 GLQEL-------FPKLEYLEKFKC 769 (801)
Q Consensus 753 ~l~~~-------~p~L~~L~l~~c 769 (801)
.+++. +++|+.|++.++
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 484 QLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSS
T ss_pred ccCCcCHHHHhcCcccCEEEecCC
Confidence 88743 344555555444
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=3.4e-26 Score=272.16 Aligned_cols=353 Identities=17% Similarity=0.083 Sum_probs=196.5
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...|.++++|++|+|++|+|+++.+..|..+++|++|.+.+|.+..+++..|.++++|++|+|++|.+++.
T Consensus 66 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------- 136 (680)
T 1ziw_A 66 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST--------- 136 (680)
T ss_dssp TTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCC---------
T ss_pred HHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccccc---------
Confidence 45678888889999998888888888888888899998888888888888888888899999988887543
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhc--CCCCCCEEeccCCCCCCCCccc------------------------
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEIS--YLTSLEILDLRACYNLDKLPDE------------------------ 549 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~--~L~~L~~L~Ls~n~~~~~lp~~------------------------ 549 (801)
.+..+.++++|++|+|++|.+.+..+..+. .+++|++|++++|.+.+..|..
T Consensus 137 --~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 214 (680)
T 1ziw_A 137 --KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214 (680)
T ss_dssp --CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHH
T ss_pred --CchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHH
Confidence 234456666666666666655444444433 3456666666666554444433
Q ss_pred ---------------------------ccCCCC--CCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhc
Q 045877 550 ---------------------------IGKLKS--LTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKR 600 (801)
Q Consensus 550 ---------------------------~~~L~~--L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~ 600 (801)
+..++. |++|++++|.+.+..|..|+.+++|++|+ +++|. + .
T Consensus 215 ~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~---L~~n~-----l-~ 285 (680)
T 1ziw_A 215 LCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF---LEYNN-----I-Q 285 (680)
T ss_dssp HHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEE---CCSCC-----B-S
T ss_pred HHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEee---CCCCc-----c-C
Confidence 333322 55555555555544444555555555555 44444 0 1
Q ss_pred ccCcccccCCccCCeeEeeccccccccc-------ChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhh
Q 045877 601 WCSLKDLEKLEHLRKLTININSEKFQTE-------NLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLT 673 (801)
Q Consensus 601 ~~~~~~l~~L~~L~~L~L~~n~~~~~~~-------~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~ 673 (801)
...+..|..+++|+.|++++|...+... ....+..+++|+.|++++|.+.+..+..+. ....++.|+
T Consensus 286 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------~l~~L~~L~ 359 (680)
T 1ziw_A 286 HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT------GLINLKYLS 359 (680)
T ss_dssp EECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTT------TCTTCCEEE
T ss_pred ccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhc------cccCCcEEE
Confidence 1123345555555555555443221110 012566677777777777777765443321 112233333
Q ss_pred cccccc--ccccc----c-cCCCccEEEccCCCCCCCC-cccCCCCCCCccEEEeeCCcCCCC-CCCcc---cccceec-
Q 045877 674 KFRTRV--TERSQ----H-VESKLEKLDFQCFPDEKLP-SWVHPYSFKNLKNLYIRGGRLNSL-EGSEW---ETVKVLR- 740 (801)
Q Consensus 674 ~~~~~l--~~~~~----~-~~~~L~~L~L~~n~~~~lp-~~l~~~~l~~L~~L~L~~n~l~~~-~~~~f---~~L~~l~- 740 (801)
...+.+ ..... . ..++|+.|++++|.+..++ ..+. .+++|++|+|++|.+.+. +...| ++|+.++
T Consensus 360 Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 437 (680)
T 1ziw_A 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS--WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437 (680)
T ss_dssp CTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred CCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh--CCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence 222211 00000 0 0135666666666555443 2333 666666666666666542 22222 2222222
Q ss_pred ---------------ccccccccccccccc---------CcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCc
Q 045877 741 ---------------LKYLNELKIDWKGLQ---------ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQ 796 (801)
Q Consensus 741 ---------------L~~L~~L~l~~n~l~---------~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~ 796 (801)
++.|+.|+++.|.+. +.+++|+.|++.++ +++.++. ..+..+++|++||+++|
T Consensus 438 s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~--~~~~~l~~L~~L~Ls~N 514 (680)
T 1ziw_A 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANIND--DMLEGLEKLEILDLQHN 514 (680)
T ss_dssp CSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCT--TTTTTCTTCCEEECCSS
T ss_pred CCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC-CCCcCCh--hhhccccccCEEeCCCC
Confidence 233444444444332 22344555555444 3443332 24567788889999888
Q ss_pred ccc
Q 045877 797 QHR 799 (801)
Q Consensus 797 ~~~ 799 (801)
++.
T Consensus 515 ~l~ 517 (680)
T 1ziw_A 515 NLA 517 (680)
T ss_dssp CCG
T ss_pred Ccc
Confidence 765
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=3.6e-26 Score=265.62 Aligned_cols=342 Identities=17% Similarity=0.116 Sum_probs=220.6
Q ss_pred cccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcC
Q 045877 425 LFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKN 504 (801)
Q Consensus 425 L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~ 504 (801)
.+++++++|++++++...+ ++++.|++.+|.+..+++..|.++++|++|+|++|.+++ ..|..|.+
T Consensus 33 ~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~ 98 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-----------LDFHVFLF 98 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE-----------ECTTTTTT
T ss_pred CcEEEcCCCCCccCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc-----------CCHHHhCC
Confidence 3789999999998665443 789999999999999999999999999999999999853 23678999
Q ss_pred CcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCC-CCcccccCCCCCCEEcccCCccccCCCcccCCCCcc--c
Q 045877 505 MKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLD-KLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL--Q 581 (801)
Q Consensus 505 l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~-~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L--~ 581 (801)
+++|++|+|++|.+ ..+|.. .+++|++|+|++|.+.+ .+|..|+++++|++|++++|.+.+. .+..+++| +
T Consensus 99 l~~L~~L~Ls~N~l-~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~ 172 (562)
T 3a79_B 99 NQDLEYLDVSHNRL-QNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLS 172 (562)
T ss_dssp CTTCCEEECTTSCC-CEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEE
T ss_pred CCCCCEEECCCCcC-CccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceee
Confidence 99999999999864 578876 89999999999997766 4568999999999999999998763 34455555 8
Q ss_pred ccccccccCCcchhhhhhcccCcc--------------------------cccCCccCCeeEeecccc------------
Q 045877 582 VLKGFVISDHAEDDRRWKRWCSLK--------------------------DLEKLEHLRKLTININSE------------ 623 (801)
Q Consensus 582 ~L~~~~l~~n~~~~~~~~~~~~~~--------------------------~l~~L~~L~~L~L~~n~~------------ 623 (801)
+|+ ++.|.... ....+. .+..+++|+.|++++|..
T Consensus 173 ~L~---L~~n~l~~----~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l 245 (562)
T 3a79_B 173 CIL---LDLVSYHI----KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL 245 (562)
T ss_dssp EEE---EEESSCCC----CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHH
T ss_pred EEE---eecccccc----cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHH
Confidence 887 76665100 001122 233456777777777631
Q ss_pred ----------------cccc-cChhhhhcccCCcEEEeeccCCCCCCCCCCC----CCCCccc-----------------
Q 045877 624 ----------------KFQT-ENLSTVLAFKRLLQLKVSWGGGSANKSTKPE----PQTGRKD----------------- 665 (801)
Q Consensus 624 ----------------~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~----~~~~~~~----------------- 665 (801)
.+.. ..........+|++|++++|.+.+..+..+. ..+....
T Consensus 246 ~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~ 325 (562)
T 3a79_B 246 TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325 (562)
T ss_dssp HSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHH
T ss_pred hccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhh
Confidence 1100 0000111234889999999988865554331 0000000
Q ss_pred ----hhchhhhhccccccccccc-ccCCCccEEEccCCCCCC-CCcccCCCCCCCccEEEeeCCcCCCCCC-----Cccc
Q 045877 666 ----NFFIKTLTKFRTRVTERSQ-HVESKLEKLDFQCFPDEK-LPSWVHPYSFKNLKNLYIRGGRLNSLEG-----SEWE 734 (801)
Q Consensus 666 ----~~~l~~L~~~~~~l~~~~~-~~~~~L~~L~L~~n~~~~-lp~~l~~~~l~~L~~L~L~~n~l~~~~~-----~~f~ 734 (801)
...++.|....+.+..... ...++|+.|+|++|.+.. +|.++. .+++|++|+|++|.+++++. ..++
T Consensus 326 ~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~~~l~ 403 (562)
T 3a79_B 326 SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS--TLKRLQTLILQRNGLKNFFKVALMTKNMS 403 (562)
T ss_dssp HHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC--SCSSCCEEECCSSCCCBTTHHHHTTTTCT
T ss_pred hhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhc--ccCCCCEEECCCCCcCCcccchhhhcCCC
Confidence 0113333333333322221 112455555555554443 334433 45555555555555544331 1122
Q ss_pred cccee-----------------ccccccccccccccccC----cC-CCCceeeccCCCCCcccCCCCCcccccCCcceEe
Q 045877 735 TVKVL-----------------RLKYLNELKIDWKGLQE----LF-PKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLN 792 (801)
Q Consensus 735 ~L~~l-----------------~L~~L~~L~l~~n~l~~----~~-p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~Ld 792 (801)
+|+.+ .+.+|+.|++++|.+++ .+ ++|+.|+++++ +++.+|. .+.++++|++||
T Consensus 404 ~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~---~~~~l~~L~~L~ 479 (562)
T 3a79_B 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPK---DVTHLQALQELN 479 (562)
T ss_dssp TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCT---TTTSSCCCSEEE
T ss_pred CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccCh---hhcCCCCCCEEE
Confidence 22222 34566777777777752 23 57888888887 6777765 556889999999
Q ss_pred CCCcccc
Q 045877 793 NSKQQHR 799 (801)
Q Consensus 793 lS~~~~~ 799 (801)
+++|++.
T Consensus 480 L~~N~l~ 486 (562)
T 3a79_B 480 VASNQLK 486 (562)
T ss_dssp CCSSCCC
T ss_pred CCCCCCC
Confidence 9999876
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=7.2e-26 Score=256.79 Aligned_cols=322 Identities=18% Similarity=0.157 Sum_probs=229.7
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...+..+++|++|+|++|+|++..+ +..+++|++|.+.+|.+..+++ |.++++|++|+|++|.++.
T Consensus 61 l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~---------- 126 (466)
T 1o6v_A 61 IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD---------- 126 (466)
T ss_dssp CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC----------
T ss_pred CcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC----------
Confidence 3457889999999999999999876 8899999999999999988876 8999999999999998853
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccC
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLS 575 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~ 575 (801)
++. +.++++|++|+|++|.+ ..++ .++.+++|++|+++++ ..+ ++ .+.++++|++|++++|.+... + .+.
T Consensus 127 --~~~-~~~l~~L~~L~l~~n~l-~~~~-~~~~l~~L~~L~l~~~-~~~-~~-~~~~l~~L~~L~l~~n~l~~~-~-~l~ 196 (466)
T 1o6v_A 127 --IDP-LKNLTNLNRLELSSNTI-SDIS-ALSGLTSLQQLSFGNQ-VTD-LK-PLANLTTLERLDISSNKVSDI-S-VLA 196 (466)
T ss_dssp --CGG-GTTCTTCSEEEEEEEEE-CCCG-GGTTCTTCSEEEEEES-CCC-CG-GGTTCTTCCEEECCSSCCCCC-G-GGG
T ss_pred --ChH-HcCCCCCCEEECCCCcc-CCCh-hhccCCcccEeecCCc-ccC-ch-hhccCCCCCEEECcCCcCCCC-h-hhc
Confidence 232 88899999999999854 4455 4788888888888643 433 33 278888888888888886543 2 477
Q ss_pred CCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCC
Q 045877 576 LLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKST 655 (801)
Q Consensus 576 ~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 655 (801)
.+++|++|+ +++|. ....+ .++.+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+.
T Consensus 197 ~l~~L~~L~---l~~n~-------l~~~~-~~~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l~~~~~~ 261 (466)
T 1o6v_A 197 KLTNLESLI---ATNNQ-------ISDIT-PLGILTNLDELSLNGNQLKDI----GTLASLTNLTDLDLANNQISNLAPL 261 (466)
T ss_dssp GCTTCSEEE---CCSSC-------CCCCG-GGGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCCCGGG
T ss_pred cCCCCCEEE---ecCCc-------ccccc-cccccCCCCEEECCCCCcccc----hhhhcCCCCCEEECCCCccccchhh
Confidence 788888887 77776 32232 267788888888888877653 4577788888888888877764321
Q ss_pred CCCCCCCccchhchhhhhccccccccccc-ccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCccc
Q 045877 656 KPEPQTGRKDNFFIKTLTKFRTRVTERSQ-HVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWE 734 (801)
Q Consensus 656 ~~~~~~~~~~~~~l~~L~~~~~~l~~~~~-~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~ 734 (801)
.....++.|....+.+....+ ...++|+.|+|++|.+..++. +. .+++|+.|+|++|.+++..+ +
T Consensus 262 --------~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~--~l~~L~~L~L~~n~l~~~~~--~- 327 (466)
T 1o6v_A 262 --------SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-IS--NLKNLTYLTLYFNNISDISP--V- 327 (466)
T ss_dssp --------TTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG-GG--GCTTCSEEECCSSCCSCCGG--G-
T ss_pred --------hcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh-hc--CCCCCCEEECcCCcCCCchh--h-
Confidence 112334444444443332211 113678888888887777665 33 78888888888888877754 2
Q ss_pred ccceecccccccccccccccc-----CcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 735 TVKVLRLKYLNELKIDWKGLQ-----ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 735 ~L~~l~L~~L~~L~l~~n~l~-----~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
..+.+|+.|++++|.+. +.+++|+.|++.+| ++..++. +.++++|+.|++++|++.
T Consensus 328 ----~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~----~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 328 ----SSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHN-QISDLTP----LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp ----GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCBCGG----GTTCTTCCEEECCCEEEE
T ss_pred ----ccCccCCEeECCCCccCCchhhccCCCCCEEeCCCC-ccCccch----hhcCCCCCEEeccCCccc
Confidence 24566666666666665 35667777777776 3444332 567888999999988765
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=5.4e-27 Score=273.04 Aligned_cols=147 Identities=18% Similarity=0.142 Sum_probs=130.5
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
++++.|+|++|+|+++.+..|..+++|++|++.+|.+..+.+..|.++++|++|+|++|.++. ..+..|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~~~ 96 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-----------LALGAF 96 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-----------ECTTTT
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-----------cCHhhh
Confidence 478999999999999999999999999999999999999999999999999999999999853 225789
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCC-CCcccccCCCCCCEEcccCCccccCCCcccCCCCcc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLD-KLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL 580 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~-~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L 580 (801)
.++++|++|+|++|.+.+..+..++++++|++|+|++|.+.+ .+|..|+++++|++|++++|.+.+..+..++.+.+|
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred cCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 999999999999986554444479999999999999997776 579999999999999999999988777778777777
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=1.4e-25 Score=242.41 Aligned_cols=299 Identities=14% Similarity=0.096 Sum_probs=233.8
Q ss_pred ccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHh
Q 045877 422 IKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKG 501 (801)
Q Consensus 422 l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~ 501 (801)
..+++.++++++.++.++... .+.++.|.+.+|.+..+++..|.++++|++|+|++|.++. ..|..
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~~ 95 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-----------ISPGA 95 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC-----------BCTTT
T ss_pred cCCCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe-----------eCHHH
Confidence 346788999999988765433 2578999999999999999899999999999999999853 23678
Q ss_pred hcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCcccc--CCCcccCCCCc
Q 045877 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLD--GIPKKLSLLSK 579 (801)
Q Consensus 502 l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~--~~p~~~~~L~~ 579 (801)
|..+++|++|+|++|. +..+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+..+++
T Consensus 96 ~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp TTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred hcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence 8999999999999985 557777665 799999999998887777789999999999999999853 66778899999
Q ss_pred ccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCC
Q 045877 580 LQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEP 659 (801)
Q Consensus 580 L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 659 (801)
|++|+ +++|. ...++..+. ++|++|++++|.+.... +..+..+++|+.|++++|.+.+..+..+
T Consensus 173 L~~L~---l~~n~-------l~~l~~~~~--~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-- 236 (330)
T 1xku_A 173 LSYIR---IADTN-------ITTIPQGLP--PSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAVDNGSL-- 236 (330)
T ss_dssp CCEEE---CCSSC-------CCSCCSSCC--TTCSEEECTTSCCCEEC--TGGGTTCTTCCEEECCSSCCCEECTTTG--
T ss_pred cCEEE---CCCCc-------cccCCcccc--ccCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCceeChhhc--
Confidence 99998 88887 445555443 79999999999998776 7789999999999999999876443211
Q ss_pred CCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCccccccee
Q 045877 660 QTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVL 739 (801)
Q Consensus 660 ~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l 739 (801)
.. .++|+.|+|++|.+..+|.++. .+++|++|+|++|.|++++...|......
T Consensus 237 ------------------------~~-l~~L~~L~L~~N~l~~lp~~l~--~l~~L~~L~l~~N~i~~~~~~~f~~~~~~ 289 (330)
T 1xku_A 237 ------------------------AN-TPHLRELHLNNNKLVKVPGGLA--DHKYIQVVYLHNNNISAIGSNDFCPPGYN 289 (330)
T ss_dssp ------------------------GG-STTCCEEECCSSCCSSCCTTTT--TCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred ------------------------cC-CCCCCEEECCCCcCccCChhhc--cCCCcCEEECCCCcCCccChhhcCCcccc
Confidence 12 3689999999999999999987 99999999999999999988776322110
Q ss_pred ccccccccccccccccCcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcc
Q 045877 740 RLKYLNELKIDWKGLQELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQ 797 (801)
Q Consensus 740 ~L~~L~~L~l~~n~l~~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~ 797 (801)
...+.|+.|++.+.+ +.........+..+.+|+.+|+++|+
T Consensus 290 ----------------~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 290 ----------------TKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ----------------TTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ----------------cccccccceEeecCc-ccccccCccccccccceeEEEecccC
Confidence 123455666666553 33333333466677888888888875
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=1.1e-25 Score=243.67 Aligned_cols=297 Identities=16% Similarity=0.152 Sum_probs=233.3
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
..++.++++++.++.++... .++++.|.+.+|.+..+.+..|.++++|++|+|++|.++. ..|..|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~~~ 98 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK-----------IHEKAF 98 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-----------ECGGGS
T ss_pred ccCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc-----------cCHhHh
Confidence 36788999999998665443 2589999999999999999999999999999999999853 237789
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccc--cCCCcccCCCCcc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLL--DGIPKKLSLLSKL 580 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~--~~~p~~~~~L~~L 580 (801)
.++++|++|+|++|. +..+|..+. ++|++|++++|.+....+..|.++++|++|++++|.+. +..+..+..+ +|
T Consensus 99 ~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L 174 (332)
T 2ft3_A 99 SPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KL 174 (332)
T ss_dssp TTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CC
T ss_pred hCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-cc
Confidence 999999999999985 457777665 89999999999777666667999999999999999985 3677778888 89
Q ss_pred cccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCC
Q 045877 581 QVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQ 660 (801)
Q Consensus 581 ~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 660 (801)
++|+ +++|. ...++..+. ++|++|++++|.+.... +..+..+++|+.|++++|.+.+..+..+
T Consensus 175 ~~L~---l~~n~-------l~~l~~~~~--~~L~~L~l~~n~i~~~~--~~~l~~l~~L~~L~L~~N~l~~~~~~~~--- 237 (332)
T 2ft3_A 175 NYLR---ISEAK-------LTGIPKDLP--ETLNELHLDHNKIQAIE--LEDLLRYSKLYRLGLGHNQIRMIENGSL--- 237 (332)
T ss_dssp SCCB---CCSSB-------CSSCCSSSC--SSCSCCBCCSSCCCCCC--TTSSTTCTTCSCCBCCSSCCCCCCTTGG---
T ss_pred CEEE---CcCCC-------CCccCcccc--CCCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCCcCChhHh---
Confidence 9998 88887 455565544 78999999999998776 6788999999999999999887543211
Q ss_pred CCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceec
Q 045877 661 TGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLR 740 (801)
Q Consensus 661 ~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~ 740 (801)
.. .++|+.|+|++|.+..+|.++. .+++|++|+|++|.|++++...|..+.
T Consensus 238 -----------------------~~-l~~L~~L~L~~N~l~~lp~~l~--~l~~L~~L~l~~N~l~~~~~~~~~~~~--- 288 (332)
T 2ft3_A 238 -----------------------SF-LPTLRELHLDNNKLSRVPAGLP--DLKLLQVVYLHTNNITKVGVNDFCPVG--- 288 (332)
T ss_dssp -----------------------GG-CTTCCEEECCSSCCCBCCTTGG--GCTTCCEEECCSSCCCBCCTTSSSCSS---
T ss_pred -----------------------hC-CCCCCEEECCCCcCeecChhhh--cCccCCEEECCCCCCCccChhHccccc---
Confidence 12 3699999999999999999987 999999999999999999886663221
Q ss_pred cccccccccccccccCcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcc
Q 045877 741 LKYLNELKIDWKGLQELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQ 797 (801)
Q Consensus 741 L~~L~~L~l~~n~l~~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~ 797 (801)
+...++.|+.|++.+++ +.........+..+++|+.|++++|+
T Consensus 289 -------------~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 289 -------------FGVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -------------CCSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred -------------cccccccccceEeecCc-ccccccCcccccccchhhhhhccccc
Confidence 01124566777777764 33333333466778888888888875
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1.9e-25 Score=251.94 Aligned_cols=291 Identities=17% Similarity=0.122 Sum_probs=241.1
Q ss_pred hcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeec
Q 045877 435 IENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQ 514 (801)
Q Consensus 435 l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls 514 (801)
+.+..+..+..+++|+.|.+.+|.+.+++ .|..+++|++|+|++|.+++ ++ ++.+++|++|+|+
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~------------~~--~~~l~~L~~L~Ls 93 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITT------------LD--LSQNTNLTYLACD 93 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSC------------CC--CTTCTTCSEEECC
T ss_pred cCcccccChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCe------------Ec--cccCCCCCEEECc
Confidence 34445556778899999999999999874 68999999999999999853 23 7889999999999
Q ss_pred CCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcch
Q 045877 515 GMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAED 594 (801)
Q Consensus 515 ~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~ 594 (801)
+|.+.+ ++ ++++++|++|++++|.+.+ +| ++.+++|++|++++|.+.+ ++ ++.+++|++|+ +++|.
T Consensus 94 ~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~---l~~n~-- 159 (457)
T 3bz5_A 94 SNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELD---CHLNK-- 159 (457)
T ss_dssp SSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEE---CTTCS--
T ss_pred CCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEE---CCCCC--
Confidence 986555 44 8999999999999997665 55 8999999999999999886 43 88999999999 88874
Q ss_pred hhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhc
Q 045877 595 DRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTK 674 (801)
Q Consensus 595 ~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~ 674 (801)
..... .++.+++|+.|++++|.+.+. + +..+++|+.|++++|.+.+...
T Consensus 160 -----~~~~~-~~~~l~~L~~L~ls~n~l~~l---~--l~~l~~L~~L~l~~N~l~~~~l-------------------- 208 (457)
T 3bz5_A 160 -----KITKL-DVTPQTQLTTLDCSFNKITEL---D--VSQNKLLNRLNCDTNNITKLDL-------------------- 208 (457)
T ss_dssp -----CCCCC-CCTTCTTCCEEECCSSCCCCC---C--CTTCTTCCEEECCSSCCSCCCC--------------------
T ss_pred -----ccccc-ccccCCcCCEEECCCCcccee---c--cccCCCCCEEECcCCcCCeecc--------------------
Confidence 11122 588999999999999998874 2 7889999999999999886421
Q ss_pred ccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecc--ccccccccccc
Q 045877 675 FRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRL--KYLNELKIDWK 752 (801)
Q Consensus 675 ~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L--~~L~~L~l~~n 752 (801)
.. .++|+.|++++|.+..+| +. .+++|++|++++|.+++++...+++|+.+.+ .+|+.|+++.|
T Consensus 209 ---------~~-l~~L~~L~Ls~N~l~~ip--~~--~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n 274 (457)
T 3bz5_A 209 ---------NQ-NIQLTFLDCSSNKLTEID--VT--PLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHN 274 (457)
T ss_dssp ---------TT-CTTCSEEECCSSCCSCCC--CT--TCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTC
T ss_pred ---------cc-CCCCCEEECcCCcccccC--cc--ccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCC
Confidence 11 379999999999999988 44 8999999999999999999888999987765 47888999888
Q ss_pred ccc-----CcCCCCceeeccCCCCCcccCCCCC-----cccccCCcceEeCCCccccC
Q 045877 753 GLQ-----ELFPKLEYLEKFKCHKVTLCPCDGY-----GIWEKSDLINLNNSKQQHRA 800 (801)
Q Consensus 753 ~l~-----~~~p~L~~L~l~~c~~L~~lp~~~n-----~i~~~~~L~~LdlS~~~~~~ 800 (801)
.+. +.+++|+.|++++|..+..+|...+ .+.+.++|+.|++++|++..
T Consensus 275 ~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 275 TQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE 332 (457)
T ss_dssp TTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred ccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc
Confidence 765 4568999999999998888887555 34567899999999998863
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=9.7e-26 Score=249.65 Aligned_cols=282 Identities=15% Similarity=0.089 Sum_probs=234.6
Q ss_pred cccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCch
Q 045877 445 KRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPS 524 (801)
Q Consensus 445 ~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~ 524 (801)
.+.+++.+.+.++.+..+++..|.++++|++|+|++|.++.. .+..|..+++|++|+|++|.+.+..|.
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-----------DTYAFAYAHTIQKLYMGFNAIRYLPPH 111 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEE-----------CTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccccc-----------ChhhccCCCCcCEEECCCCCCCcCCHH
Confidence 467899999999999999999999999999999999998532 245789999999999999977777778
Q ss_pred hhcCCCCCCEEeccCCCCCCCCcc-cccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccC
Q 045877 525 EISYLTSLEILDLRACYNLDKLPD-EIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCS 603 (801)
Q Consensus 525 ~i~~L~~L~~L~Ls~n~~~~~lp~-~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~ 603 (801)
.++++++|++|+|++|.+. .+|. .|.++++|++|++++|.+.+..|..++.+++|++|+ +++|. ....
T Consensus 112 ~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~---l~~n~-------l~~~ 180 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ---LSSNR-------LTHV 180 (390)
T ss_dssp TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEE---CCSSC-------CSBC
T ss_pred HhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEE---CCCCc-------CCcc
Confidence 8999999999999999666 4554 468999999999999999888888899999999999 88887 2222
Q ss_pred cccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccc
Q 045877 604 LKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERS 683 (801)
Q Consensus 604 ~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~ 683 (801)
.+..+++|+.|++++|.+... ....+|+.|++++|.+.....
T Consensus 181 --~~~~l~~L~~L~l~~n~l~~~-------~~~~~L~~L~l~~n~l~~~~~----------------------------- 222 (390)
T 3o6n_A 181 --DLSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVVRG----------------------------- 222 (390)
T ss_dssp --CGGGCTTCSEEECCSSCCSEE-------ECCSSCSEEECCSSCCCEEEC-----------------------------
T ss_pred --ccccccccceeeccccccccc-------CCCCcceEEECCCCeeeeccc-----------------------------
Confidence 467889999999999987653 334689999999998764311
Q ss_pred cccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccccc------Cc
Q 045877 684 QHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ------EL 757 (801)
Q Consensus 684 ~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~------~~ 757 (801)
..+++|+.|++++|.+..+ .++. .+++|++|+|++|.++++.+..| ..+++|+.|++++|.+. +.
T Consensus 223 -~~~~~L~~L~l~~n~l~~~-~~l~--~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (390)
T 3o6n_A 223 -PVNVELTILKLQHNNLTDT-AWLL--NYPGLVEVDLSYNELEKIMYHPF-----VKMQRLERLYISNNRLVALNLYGQP 293 (390)
T ss_dssp -CCCSSCCEEECCSSCCCCC-GGGG--GCTTCSEEECCSSCCCEEESGGG-----TTCSSCCEEECCSSCCCEEECSSSC
T ss_pred -cccccccEEECCCCCCccc-HHHc--CCCCccEEECCCCcCCCcChhHc-----cccccCCEEECCCCcCcccCcccCC
Confidence 1236899999999998876 4665 89999999999999999877666 35677888888888876 46
Q ss_pred CCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 758 FPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 758 ~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
+++|+.|++.+| +++.+|. .+..+++|+.||+++|++.
T Consensus 294 l~~L~~L~L~~n-~l~~~~~---~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 294 IPTLKVLDLSHN-HLLHVER---NQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp CTTCCEEECCSS-CCCCCGG---GHHHHTTCSEEECCSSCCC
T ss_pred CCCCCEEECCCC-cceecCc---cccccCcCCEEECCCCccc
Confidence 889999999998 6777765 5778999999999999875
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=2.7e-25 Score=241.90 Aligned_cols=296 Identities=16% Similarity=0.162 Sum_probs=232.5
Q ss_pred ccCCCcchhhhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCC
Q 045877 407 NFGEKPEQKAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVD 486 (801)
Q Consensus 407 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~ 486 (801)
.+.+........+..+++|++|++++|+|++..+ +..+++|++|.+.+|.+..+ ..|.++++|++|+|++|.++.
T Consensus 50 ~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~- 124 (347)
T 4fmz_A 50 VVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISD- 124 (347)
T ss_dssp ECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCC-
T ss_pred EEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccC-
Confidence 3333333334568899999999999999998876 88999999999999999886 369999999999999999853
Q ss_pred CCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCcc
Q 045877 487 DIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFL 566 (801)
Q Consensus 487 ~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l 566 (801)
++. +..+++|++|++++|.....++. +..+++|++|++++|.+... +. +..+++|++|++++|.+
T Consensus 125 -----------~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~-~~-~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 125 -----------ISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDV-TP-IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp -----------CGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCSEEECTTSCC
T ss_pred -----------chh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCc-hh-hccCCCCCEEEccCCcc
Confidence 333 88999999999999977776655 99999999999999965544 33 88999999999999997
Q ss_pred ccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeec
Q 045877 567 LDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSW 646 (801)
Q Consensus 567 ~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~ 646 (801)
.+. +. +..+++|+.|+ +++|. ..... .+..+++|++|++++|.+.... .+..+++|+.|++++
T Consensus 190 ~~~-~~-~~~l~~L~~L~---l~~n~-------l~~~~-~~~~~~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 190 EDI-SP-LASLTSLHYFT---AYVNQ-------ITDIT-PVANMTRLNSLKIGNNKITDLS----PLANLSQLTWLEIGT 252 (347)
T ss_dssp CCC-GG-GGGCTTCCEEE---CCSSC-------CCCCG-GGGGCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCS
T ss_pred ccc-cc-ccCCCccceee---cccCC-------CCCCc-hhhcCCcCCEEEccCCccCCCc----chhcCCCCCEEECCC
Confidence 653 33 88889999998 77777 33333 3889999999999999987654 288999999999999
Q ss_pred cCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCC
Q 045877 647 GGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLN 726 (801)
Q Consensus 647 n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~ 726 (801)
|.+.+.. .+ .. .++|+.|++++|.+..++ .+. .+++|++|+|++|.++
T Consensus 253 n~l~~~~---------------------------~~-~~-l~~L~~L~l~~n~l~~~~-~~~--~l~~L~~L~L~~n~l~ 300 (347)
T 4fmz_A 253 NQISDIN---------------------------AV-KD-LTKLKMLNVGSNQISDIS-VLN--NLSQLNSLFLNNNQLG 300 (347)
T ss_dssp SCCCCCG---------------------------GG-TT-CTTCCEEECCSSCCCCCG-GGG--GCTTCSEEECCSSCCC
T ss_pred CccCCCh---------------------------hH-hc-CCCcCEEEccCCccCCCh-hhc--CCCCCCEEECcCCcCC
Confidence 9887531 11 11 379999999999998875 344 8999999999999998
Q ss_pred CCCCCcccccceeccccccccccccccccCcCCCCceeeccCCCCCcccCCCCCcc
Q 045877 727 SLEGSEWETVKVLRLKYLNELKIDWKGLQELFPKLEYLEKFKCHKVTLCPCDGYGI 782 (801)
Q Consensus 727 ~~~~~~f~~L~~l~L~~L~~L~l~~n~l~~~~p~L~~L~l~~c~~L~~lp~~~n~i 782 (801)
+..+..| ..+++|+.|++++|.+++..| +..+++|+.+.+.+|.+
T Consensus 301 ~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 301 NEDMEVI-----GGLTNLTTLFLSQNHITDIRP------LASLSKMDSADFANQVI 345 (347)
T ss_dssp GGGHHHH-----HTCTTCSEEECCSSSCCCCGG------GGGCTTCSEESSSCC--
T ss_pred CcChhHh-----hccccCCEEEccCCccccccC------hhhhhccceeehhhhcc
Confidence 8876555 356788888888888874322 34455555555555443
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.5e-25 Score=262.17 Aligned_cols=283 Identities=14% Similarity=0.070 Sum_probs=237.1
Q ss_pred cccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCch
Q 045877 445 KRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPS 524 (801)
Q Consensus 445 ~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~ 524 (801)
.+.+++.+.+.++.+..+++..|.++++|++|+|++|.+++. .+..|..+++|++|+|++|.+.+..|.
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~ 117 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-----------DTYAFAYAHTIQKLYMGFNAIRYLPPH 117 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEE-----------CTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCC-----------ChHHhcCCCCCCEEECCCCcCCCCCHH
Confidence 356788999999999999999999999999999999998532 245889999999999999987777777
Q ss_pred hhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCc
Q 045877 525 EISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSL 604 (801)
Q Consensus 525 ~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~ 604 (801)
.|+++++|++|+|++|.+.+..+..|+++++|++|+|++|.+.+..|..|+.+++|++|+ +++|. ....
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~---L~~N~-------l~~~- 186 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ---LSSNR-------LTHV- 186 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE---CTTSC-------CSBC-
T ss_pred HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE---CcCCC-------CCCc-
Confidence 889999999999999977655555579999999999999999988888899999999999 88887 3222
Q ss_pred ccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhccccccccccc
Q 045877 605 KDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQ 684 (801)
Q Consensus 605 ~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~ 684 (801)
.++.+++|+.|++++|.+.+. ....+|+.|++++|.+.....
T Consensus 187 -~~~~l~~L~~L~l~~n~l~~l-------~~~~~L~~L~ls~n~l~~~~~------------------------------ 228 (597)
T 3oja_B 187 -DLSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVVRG------------------------------ 228 (597)
T ss_dssp -CGGGCTTCSEEECCSSCCSEE-------ECCTTCSEEECCSSCCCEEEC------------------------------
T ss_pred -ChhhhhhhhhhhcccCccccc-------cCCchhheeeccCCccccccc------------------------------
Confidence 467789999999999987653 345689999999998764321
Q ss_pred ccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccccc------CcC
Q 045877 685 HVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ------ELF 758 (801)
Q Consensus 685 ~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~------~~~ 758 (801)
..+++|+.|+|++|.+... .++. .+++|+.|+|++|.+.++.+..| ..+.+|+.|++++|.+. +.+
T Consensus 229 ~~~~~L~~L~L~~n~l~~~-~~l~--~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~l~~~~~~l 300 (597)
T 3oja_B 229 PVNVELTILKLQHNNLTDT-AWLL--NYPGLVEVDLSYNELEKIMYHPF-----VKMQRLERLYISNNRLVALNLYGQPI 300 (597)
T ss_dssp SCCSCCCEEECCSSCCCCC-GGGG--GCTTCSEEECCSSCCCEEESGGG-----TTCSSCCEEECTTSCCCEEECSSSCC
T ss_pred ccCCCCCEEECCCCCCCCC-hhhc--cCCCCCEEECCCCccCCCCHHHh-----cCccCCCEEECCCCCCCCCCcccccC
Confidence 2246899999999998764 5666 89999999999999999987766 45678888888888876 458
Q ss_pred CCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 759 PKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 759 p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
|+|+.|++++| .+..+|. .+..+++|++||+++|++.
T Consensus 301 ~~L~~L~Ls~N-~l~~i~~---~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 301 PTLKVLDLSHN-HLLHVER---NQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp TTCCEEECCSS-CCCCCGG---GHHHHTTCSEEECCSSCCC
T ss_pred CCCcEEECCCC-CCCccCc---ccccCCCCCEEECCCCCCC
Confidence 89999999998 6777775 6788999999999999875
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=4.7e-25 Score=250.08 Aligned_cols=321 Identities=17% Similarity=0.159 Sum_probs=249.9
Q ss_pred hhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchh
Q 045877 418 EFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTD 497 (801)
Q Consensus 418 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 497 (801)
....++.|+.|+++++.+..+. .+..+++|+.|.+.+|.+..+++ |.++++|++|+|++|.++.
T Consensus 41 ~~~~l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~------------ 104 (466)
T 1o6v_A 41 SQTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD------------ 104 (466)
T ss_dssp CHHHHHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC------------
T ss_pred ChhHhccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc------------
Confidence 3456788999999999998754 36788999999999999998876 9999999999999999853
Q ss_pred hhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCC
Q 045877 498 YLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLL 577 (801)
Q Consensus 498 lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L 577 (801)
++. +.++++|++|+|++|.+ ..++. ++++++|++|++++|.+.+ ++ .++.+++|++|++++ .+.+. + .+..+
T Consensus 105 ~~~-~~~l~~L~~L~L~~n~l-~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~~-~-~~~~l 176 (466)
T 1o6v_A 105 ITP-LANLTNLTGLTLFNNQI-TDIDP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTDL-K-PLANL 176 (466)
T ss_dssp CGG-GTTCTTCCEEECCSSCC-CCCGG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCCC-G-GGTTC
T ss_pred Chh-hcCCCCCCEEECCCCCC-CCChH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccCc-h-hhccC
Confidence 233 89999999999999854 45554 9999999999999996554 44 489999999999974 44433 3 38999
Q ss_pred CcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCC
Q 045877 578 SKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKP 657 (801)
Q Consensus 578 ~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 657 (801)
++|++|+ +++|. ... ...+..+++|++|++++|.+.+.. .+..+++|+.|++++|.+.+...
T Consensus 177 ~~L~~L~---l~~n~-------l~~-~~~l~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~~~~--- 238 (466)
T 1o6v_A 177 TTLERLD---ISSNK-------VSD-ISVLAKLTNLESLIATNNQISDIT----PLGILTNLDELSLNGNQLKDIGT--- 238 (466)
T ss_dssp TTCCEEE---CCSSC-------CCC-CGGGGGCTTCSEEECCSSCCCCCG----GGGGCTTCCEEECCSSCCCCCGG---
T ss_pred CCCCEEE---CcCCc-------CCC-ChhhccCCCCCEEEecCCcccccc----cccccCCCCEEECCCCCcccchh---
Confidence 9999999 88887 332 356889999999999999987654 27889999999999999876421
Q ss_pred CCCCCccchhchhhhhccccccccccc-ccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCccccc
Q 045877 658 EPQTGRKDNFFIKTLTKFRTRVTERSQ-HVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETV 736 (801)
Q Consensus 658 ~~~~~~~~~~~l~~L~~~~~~l~~~~~-~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L 736 (801)
+ .....++.|+...+.+....+ ...++|+.|++++|.+..++. +. .+++|++|+|++|.+.++++ +
T Consensus 239 ---l--~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~--~l~~L~~L~L~~n~l~~~~~--~--- 305 (466)
T 1o6v_A 239 ---L--ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LA--GLTALTNLELNENQLEDISP--I--- 305 (466)
T ss_dssp ---G--GGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GT--TCTTCSEEECCSSCCSCCGG--G---
T ss_pred ---h--hcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-cc--CCCccCeEEcCCCcccCchh--h---
Confidence 0 122345555555554433321 123689999999998888776 44 88999999999999888765 3
Q ss_pred ceecccccccccccccccc-----CcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCccccC
Q 045877 737 KVLRLKYLNELKIDWKGLQ-----ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHRA 800 (801)
Q Consensus 737 ~~l~L~~L~~L~l~~n~l~-----~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~~ 800 (801)
..+++|+.|++++|.+. +.+++|+.|++.+| +++.++ .+.++++|+.|++++|++..
T Consensus 306 --~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~----~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 306 --SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN-KVSDVS----SLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp --GGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS-CCCCCG----GGTTCTTCCEEECCSSCCCB
T ss_pred --cCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC-ccCCch----hhccCCCCCEEeCCCCccCc
Confidence 35677778888888776 46778888888887 566653 57789999999999998753
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=2.5e-25 Score=262.03 Aligned_cols=140 Identities=18% Similarity=0.138 Sum_probs=109.6
Q ss_pred ccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhc
Q 045877 424 KLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLK 503 (801)
Q Consensus 424 ~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~ 503 (801)
++++|||++|+|+++.+..|..+++|++|++.+|.|..+++++|.++++|++|+|++|+++... +..|.
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~-----------~~~f~ 121 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-----------LGAFS 121 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-----------GGGGT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC-----------HHHhc
Confidence 6788888888888888888888888888888888888888888888888888888888874321 35678
Q ss_pred CCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCC-CCcccccCCCCCCEEcccCCccccCCCccc
Q 045877 504 NMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLD-KLPDEIGKLKSLTHLDISECFLLDGIPKKL 574 (801)
Q Consensus 504 ~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~-~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~ 574 (801)
++++|++|+|++|.+.+..+..|++|++|++|+|++|.+.. .+|..++.+++|++|++++|++.+..+..+
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc
Confidence 88888888888886655444568888888888888887654 457778888888888888887765544443
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=1.6e-25 Score=239.96 Aligned_cols=247 Identities=15% Similarity=0.112 Sum_probs=185.3
Q ss_pred cCceeeecCCcccCC--CChhhhccCCCCCEEEcCC-cccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCc
Q 045877 447 GRIETLFNVSEEFPE--FKYDWFSKLEKIKVLYLGR-WQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELP 523 (801)
Q Consensus 447 ~~L~~L~l~~n~i~~--~~~~~f~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp 523 (801)
.+++.|.+.++.+.+ ..+..|.++++|++|+|++ |.+++ .+|..|.++++|++|+|++|.+.+.+|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~-----------~~p~~l~~l~~L~~L~Ls~n~l~~~~p 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-----------PIPPAIAKLTQLHYLYITHTNVSGAIP 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES-----------CCCGGGGGCTTCSEEEEEEECCEEECC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc-----------cCChhHhcCCCCCEEECcCCeeCCcCC
Confidence 355666666666665 4566777788888888884 66642 446677888888888888877766788
Q ss_pred hhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCC-cccccccccccCCcchhhhhhcc-
Q 045877 524 SEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLS-KLQVLKGFVISDHAEDDRRWKRW- 601 (801)
Q Consensus 524 ~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~-~L~~L~~~~l~~n~~~~~~~~~~- 601 (801)
..++++++|++|+|++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.+. +|++|+ +++|. ..
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~---L~~N~-------l~~ 188 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT---ISRNR-------LTG 188 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE---CCSSE-------EEE
T ss_pred HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE---CcCCe-------eec
Confidence 8888888888888888877777888888888888888888888777888888877 788887 77776 22
Q ss_pred cCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccc
Q 045877 602 CSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTE 681 (801)
Q Consensus 602 ~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~ 681 (801)
..+..+..++ |++|++++|.+.+.. +..+..+++|+.|++++|.+.+..+ .
T Consensus 189 ~~~~~~~~l~-L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~--------------------------~ 239 (313)
T 1ogq_A 189 KIPPTFANLN-LAFVDLSRNMLEGDA--SVLFGSDKNTQKIHLAKNSLAFDLG--------------------------K 239 (313)
T ss_dssp ECCGGGGGCC-CSEEECCSSEEEECC--GGGCCTTSCCSEEECCSSEECCBGG--------------------------G
T ss_pred cCChHHhCCc-ccEEECcCCcccCcC--CHHHhcCCCCCEEECCCCceeeecC--------------------------c
Confidence 4566777776 888888888887765 6778888899999998888765322 1
Q ss_pred cccccCCCccEEEccCCCCC-CCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccc
Q 045877 682 RSQHVESKLEKLDFQCFPDE-KLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKG 753 (801)
Q Consensus 682 ~~~~~~~~L~~L~L~~n~~~-~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~ 753 (801)
+ ...++|++|+|++|.+. .+|.++. .+++|++|+|++|++++..+.. ..+++|+.+++.+|.
T Consensus 240 ~--~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~ip~~------~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 240 V--GLSKNLNGLDLRNNRIYGTLPQGLT--QLKFLHSLNVSFNNLCGEIPQG------GNLQRFDVSAYANNK 302 (313)
T ss_dssp C--CCCTTCCEEECCSSCCEECCCGGGG--GCTTCCEEECCSSEEEEECCCS------TTGGGSCGGGTCSSS
T ss_pred c--cccCCCCEEECcCCcccCcCChHHh--cCcCCCEEECcCCcccccCCCC------ccccccChHHhcCCC
Confidence 1 11368999999998887 7888887 8999999999999988665532 246677777777775
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=1.9e-24 Score=243.56 Aligned_cols=248 Identities=16% Similarity=0.073 Sum_probs=128.9
Q ss_pred hhhhhhhccccccccccchhhcchhhhhhccccCc-------------eeeecCCcccCCCChhhhccCCCCCEEEcCCc
Q 045877 415 KAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRI-------------ETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRW 481 (801)
Q Consensus 415 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L-------------~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n 481 (801)
.+.+++++++|++|++++|++.+..|..+..+.+| +.|.+.++.+.+++. -.++|++|+|++|
T Consensus 26 iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~----~~~~L~~L~l~~n 101 (454)
T 1jl5_A 26 MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE----LPPHLESLVASCN 101 (454)
T ss_dssp --------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS----CCTTCSEEECCSS
T ss_pred CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC----CcCCCCEEEccCC
Confidence 45578899999999999999999888888776654 778888887777543 1367778888877
Q ss_pred ccCCCC-----CCcccccchhhhHhhcCC-cCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCC
Q 045877 482 QSTVDD-----IPHIEIESTDYLKGLKNM-KELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKS 555 (801)
Q Consensus 482 ~l~~~~-----~~~~~~~~~~lp~~l~~l-~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~ 555 (801)
.+++.. +..+.+....+ ..+..+ ++|++|+|++|.+. .+| .++++++|++|++++|.+.+ +|..+ .+
T Consensus 102 ~l~~lp~~~~~L~~L~l~~n~l-~~l~~~~~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~ 174 (454)
T 1jl5_A 102 SLTELPELPQSLKSLLVDNNNL-KALSDLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PS 174 (454)
T ss_dssp CCSSCCCCCTTCCEEECCSSCC-SCCCSCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSC-CCCCC---TT
T ss_pred cCCccccccCCCcEEECCCCcc-CcccCCCCCCCEEECcCCCCC-CCc-ccCCCCCCCEEECCCCcCcc-cCCCc---cc
Confidence 775421 00000000000 001111 35566666655433 255 35556666666666654332 44322 35
Q ss_pred CCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhc
Q 045877 556 LTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLA 635 (801)
Q Consensus 556 L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~ 635 (801)
|++|++++|.+.+ +| .++.+++|++|+ +++|. ...++.. ..+|++|++++|.+... + .+..
T Consensus 175 L~~L~L~~n~l~~-l~-~~~~l~~L~~L~---l~~N~-------l~~l~~~---~~~L~~L~l~~n~l~~l---p-~~~~ 235 (454)
T 1jl5_A 175 LEFIAAGNNQLEE-LP-ELQNLPFLTAIY---ADNNS-------LKKLPDL---PLSLESIVAGNNILEEL---P-ELQN 235 (454)
T ss_dssp CCEEECCSSCCSS-CC-CCTTCTTCCEEE---CCSSC-------CSSCCCC---CTTCCEEECCSSCCSSC---C-CCTT
T ss_pred ccEEECcCCcCCc-Cc-cccCCCCCCEEE---CCCCc-------CCcCCCC---cCcccEEECcCCcCCcc---c-ccCC
Confidence 6666666665544 44 455666666665 55554 2222221 13566666666655522 2 3566
Q ss_pred ccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCC
Q 045877 636 FKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKL 703 (801)
Q Consensus 636 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~l 703 (801)
+++|+.|++++|.+.+.... ...++.|+...+.+..+. ..+++|+.|++++|.+..+
T Consensus 236 l~~L~~L~l~~N~l~~l~~~----------~~~L~~L~l~~N~l~~l~-~~~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 236 LPFLTTIYADNNLLKTLPDL----------PPSLEALNVRDNYLTDLP-ELPQSLTFLDVSENIFSGL 292 (454)
T ss_dssp CTTCCEEECCSSCCSSCCSC----------CTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCSEE
T ss_pred CCCCCEEECCCCcCCccccc----------ccccCEEECCCCcccccC-cccCcCCEEECcCCccCcc
Confidence 66677777776666543210 123444444444443322 2235566666665555443
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=6.8e-26 Score=242.93 Aligned_cols=253 Identities=17% Similarity=0.110 Sum_probs=219.8
Q ss_pred cccccccccchhhcc--hhhhhhccccCceeeecCC-cccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhh
Q 045877 423 KKLFNFSLSLEEIEN--KAKDCAMKRGRIETLFNVS-EEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYL 499 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~--~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp 499 (801)
.+++.|+|++|+|++ ..|..+..+++|++|.+.+ |.+....+..|.++++|++|+|++|.+++ .+|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-----------~~p 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-----------AIP 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-----------ECC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-----------cCC
Confidence 578999999999999 8899999999999999994 99998889999999999999999999852 557
Q ss_pred HhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCC-CCCEEcccCCccccCCCcccCCCC
Q 045877 500 KGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLK-SLTHLDISECFLLDGIPKKLSLLS 578 (801)
Q Consensus 500 ~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~-~L~~L~Ls~n~l~~~~p~~~~~L~ 578 (801)
..|.++++|++|+|++|.+.+.+|..++.+++|++|+|++|.+.+.+|..++.+. +|++|++++|.+.+.+|..+..+.
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~ 198 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc
Confidence 8899999999999999988889999999999999999999988889999999998 999999999999999999999997
Q ss_pred cccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCC
Q 045877 579 KLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPE 658 (801)
Q Consensus 579 ~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 658 (801)
|++|+ +++|. + ....+..+..+++|+.|+|++|.+.+.. ..+..+++|++|+|++|.+.+..+..
T Consensus 199 -L~~L~---Ls~N~-----l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~l~~L~~L~Ls~N~l~~~~p~~-- 263 (313)
T 1ogq_A 199 -LAFVD---LSRNM-----L-EGDASVLFGSDKNTQKIHLAKNSLAFDL---GKVGLSKNLNGLDLRNNRIYGTLPQG-- 263 (313)
T ss_dssp -CSEEE---CCSSE-----E-EECCGGGCCTTSCCSEEECCSSEECCBG---GGCCCCTTCCEEECCSSCCEECCCGG--
T ss_pred -ccEEE---CcCCc-----c-cCcCCHHHhcCCCCCEEECCCCceeeec---CcccccCCCCEEECcCCcccCcCChH--
Confidence 99998 88887 1 1245678999999999999999987664 44788999999999999988654321
Q ss_pred CCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCC-CCCcccCCCCCCCccEEEeeCCc-CCCCC
Q 045877 659 PQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDE-KLPSWVHPYSFKNLKNLYIRGGR-LNSLE 729 (801)
Q Consensus 659 ~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~-~lp~~l~~~~l~~L~~L~L~~n~-l~~~~ 729 (801)
... .++|+.|+|++|.+. .+|.. . .+++|+.|++++|. +.+.+
T Consensus 264 ------------------------l~~-l~~L~~L~Ls~N~l~~~ip~~-~--~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 264 ------------------------LTQ-LKFLHSLNVSFNNLCGEIPQG-G--NLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp ------------------------GGG-CTTCCEEECCSSEEEEECCCS-T--TGGGSCGGGTCSSSEEESTT
T ss_pred ------------------------Hhc-CcCCCEEECcCCcccccCCCC-c--cccccChHHhcCCCCccCCC
Confidence 122 368999999999876 67765 4 89999999999998 66544
No 43
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=5.4e-24 Score=239.78 Aligned_cols=259 Identities=15% Similarity=0.010 Sum_probs=167.5
Q ss_pred hccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCC-------------CEEEcCCcccCCCC
Q 045877 421 KIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKI-------------KVLYLGRWQSTVDD 487 (801)
Q Consensus 421 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L-------------~~L~Ls~n~l~~~~ 487 (801)
+.+.|++|++++|+| +.+|..+..+++|++|++.+|.+.+..|..++++++| +.|++++|.+++.
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l- 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL- 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-
Confidence 357899999999999 7888899999999999999999988888888888764 9999999998542
Q ss_pred CCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccc
Q 045877 488 IPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLL 567 (801)
Q Consensus 488 ~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~ 567 (801)
|. -.++|++|++++|.+.+ +|.. +.+|++|++++|.+.+ +|.. .++|++|++++|.+.
T Consensus 87 -----------p~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 87 -----------PE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE 144 (454)
T ss_dssp -----------CS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS
T ss_pred -----------CC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC
Confidence 22 13689999999986655 7753 4789999999986543 3332 268999999999987
Q ss_pred cCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeecc
Q 045877 568 DGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWG 647 (801)
Q Consensus 568 ~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n 647 (801)
+ +| .|+.+++|++|+ +++|. ...++.. ..+|++|++++|.+.+. + .+.++++|+.|++++|
T Consensus 145 ~-lp-~~~~l~~L~~L~---l~~N~-------l~~lp~~---~~~L~~L~L~~n~l~~l---~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIID---VDNNS-------LKKLPDL---PPSLEFIAAGNNQLEEL---P-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp S-CC-CCTTCTTCCEEE---CCSSC-------CSCCCCC---CTTCCEEECCSSCCSSC---C-CCTTCTTCCEEECCSS
T ss_pred C-Cc-ccCCCCCCCEEE---CCCCc-------CcccCCC---cccccEEECcCCcCCcC---c-cccCCCCCCEEECCCC
Confidence 5 77 589999999998 88887 4444443 35899999999988763 3 5788999999999999
Q ss_pred CCCCCCCCCCCCCCCccchhchhhhhccccccccc--ccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcC
Q 045877 648 GGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTER--SQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRL 725 (801)
Q Consensus 648 ~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~--~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l 725 (801)
.+.+.... ...++.|+...+.+..+ ... .++|+.|++++|.+..+|.. +++|++|++++|.+
T Consensus 206 ~l~~l~~~----------~~~L~~L~l~~n~l~~lp~~~~-l~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~N~l 269 (454)
T 1jl5_A 206 SLKKLPDL----------PLSLESIVAGNNILEELPELQN-LPFLTTIYADNNLLKTLPDL-----PPSLEALNVRDNYL 269 (454)
T ss_dssp CCSSCCCC----------CTTCCEEECCSSCCSSCCCCTT-CTTCCEEECCSSCCSSCCSC-----CTTCCEEECCSSCC
T ss_pred cCCcCCCC----------cCcccEEECcCCcCCcccccCC-CCCCCEEECCCCcCCccccc-----ccccCEEECCCCcc
Confidence 88864321 12445555444433322 112 36888999988888777753 35677777777776
Q ss_pred CCCCCCccccccee
Q 045877 726 NSLEGSEWETVKVL 739 (801)
Q Consensus 726 ~~~~~~~f~~L~~l 739 (801)
++++. .+++|+.+
T Consensus 270 ~~l~~-~~~~L~~L 282 (454)
T 1jl5_A 270 TDLPE-LPQSLTFL 282 (454)
T ss_dssp SCCCC-CCTTCCEE
T ss_pred cccCc-ccCcCCEE
Confidence 66543 23344444
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=1.1e-23 Score=227.70 Aligned_cols=267 Identities=15% Similarity=0.100 Sum_probs=213.7
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
++|+.|+|++|+|.++.+..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|.++ .+|..+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------~l~~~~ 121 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV------------EIPPNL 121 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC------------SCCSSC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC------------ccCccc
Confidence 57899999999999999999999999999999999999999999999999999999999985 334444
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCC--CCCcccccCCCCCCEEcccCCccccCCCcccCCCCcc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNL--DKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL 580 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~--~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L 580 (801)
. ++|++|+|++|.+.+..+..++.+++|++|++++|.+. +..|..+..+ +|++|++++|.+.+ +|..+. ++|
T Consensus 122 ~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L 195 (332)
T 2ft3_A 122 P--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETL 195 (332)
T ss_dssp C--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSC
T ss_pred c--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCC
Confidence 3 79999999998766555567999999999999999774 3677888888 99999999999775 676554 789
Q ss_pred cccccccccCCcchhhhhhcccCc-ccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCC
Q 045877 581 QVLKGFVISDHAEDDRRWKRWCSL-KDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEP 659 (801)
Q Consensus 581 ~~L~~~~l~~n~~~~~~~~~~~~~-~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 659 (801)
++|+ +++|. ....+ ..+..+++|++|++++|.+.... +..+..+++|+.|++++|.+.....
T Consensus 196 ~~L~---l~~n~-------i~~~~~~~l~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~lp~----- 258 (332)
T 2ft3_A 196 NELH---LDHNK-------IQAIELEDLLRYSKLYRLGLGHNQIRMIE--NGSLSFLPTLRELHLDNNKLSRVPA----- 258 (332)
T ss_dssp SCCB---CCSSC-------CCCCCTTSSTTCTTCSCCBCCSSCCCCCC--TTGGGGCTTCCEEECCSSCCCBCCT-----
T ss_pred CEEE---CCCCc-------CCccCHHHhcCCCCCCEEECCCCcCCcCC--hhHhhCCCCCCEEECCCCcCeecCh-----
Confidence 9998 88887 33343 67999999999999999998776 6688999999999999998874321
Q ss_pred CCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCC-----CCCCccEEEeeCCcCC--CCCCCc
Q 045877 660 QTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPY-----SFKNLKNLYIRGGRLN--SLEGSE 732 (801)
Q Consensus 660 ~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~-----~l~~L~~L~L~~n~l~--~~~~~~ 732 (801)
.... .++|+.|+|++|.++.++...+.. ..+.|+.|++++|.+. ++.+..
T Consensus 259 ----------------------~l~~-l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~ 315 (332)
T 2ft3_A 259 ----------------------GLPD-LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315 (332)
T ss_dssp ----------------------TGGG-CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGG
T ss_pred ----------------------hhhc-CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccc
Confidence 1112 378999999999998887654311 2578999999999977 555555
Q ss_pred ccccceeccccccccccccc
Q 045877 733 WETVKVLRLKYLNELKIDWK 752 (801)
Q Consensus 733 f~~L~~l~L~~L~~L~l~~n 752 (801)
| ..+.+|+.+++++|
T Consensus 316 ~-----~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 316 F-----RCVTDRLAIQFGNY 330 (332)
T ss_dssp G-----TTBCCSTTEEC---
T ss_pred c-----cccchhhhhhcccc
Confidence 5 34455555555544
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=2.7e-23 Score=224.51 Aligned_cols=268 Identities=13% Similarity=0.092 Sum_probs=215.9
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
+.|+.|+|++|+|+++.+..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|.++ .+|..+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------------~l~~~~ 119 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK------------ELPEKM 119 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS------------BCCSSC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC------------ccChhh
Confidence 57899999999999999999999999999999999999999999999999999999999985 233333
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCC--CCcccccCCCCCCEEcccCCccccCCCcccCCCCcc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLD--KLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL 580 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~--~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L 580 (801)
. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+.++++|++|++++|.+. .+|..+. ++|
T Consensus 120 ~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L 194 (330)
T 1xku_A 120 P--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSL 194 (330)
T ss_dssp C--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTC
T ss_pred c--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccC
Confidence 3 799999999997777667789999999999999997743 67788999999999999999976 4666554 789
Q ss_pred cccccccccCCcchhhhhhccc-CcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCC
Q 045877 581 QVLKGFVISDHAEDDRRWKRWC-SLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEP 659 (801)
Q Consensus 581 ~~L~~~~l~~n~~~~~~~~~~~-~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 659 (801)
++|+ +++|. ... .+..+..+++|++|++++|.+.... +..+..+++|+.|++++|.+.....
T Consensus 195 ~~L~---l~~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~lp~----- 257 (330)
T 1xku_A 195 TELH---LDGNK-------ITKVDAASLKGLNNLAKLGLSFNSISAVD--NGSLANTPHLRELHLNNNKLVKVPG----- 257 (330)
T ss_dssp SEEE---CTTSC-------CCEECTGGGTTCTTCCEEECCSSCCCEEC--TTTGGGSTTCCEEECCSSCCSSCCT-----
T ss_pred CEEE---CCCCc-------CCccCHHHhcCCCCCCEEECCCCcCceeC--hhhccCCCCCCEEECCCCcCccCCh-----
Confidence 9998 88887 333 3568999999999999999998776 5678999999999999998874321
Q ss_pred CCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCC-----CCCCCccEEEeeCCcCCC--CCCCc
Q 045877 660 QTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHP-----YSFKNLKNLYIRGGRLNS--LEGSE 732 (801)
Q Consensus 660 ~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~-----~~l~~L~~L~L~~n~l~~--~~~~~ 732 (801)
.... .++|+.|+|++|.+..++...+. ...+.|+.|++++|.+.. +.+..
T Consensus 258 ----------------------~l~~-l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~ 314 (330)
T 1xku_A 258 ----------------------GLAD-HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314 (330)
T ss_dssp ----------------------TTTT-CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGG
T ss_pred ----------------------hhcc-CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccc
Confidence 1112 36899999999999988865431 134789999999999764 44445
Q ss_pred ccccceeccccccccccccc
Q 045877 733 WETVKVLRLKYLNELKIDWK 752 (801)
Q Consensus 733 f~~L~~l~L~~L~~L~l~~n 752 (801)
| ..+..++.++++.|
T Consensus 315 f-----~~~~~l~~l~L~~N 329 (330)
T 1xku_A 315 F-----RCVYVRAAVQLGNY 329 (330)
T ss_dssp G-----TTCCCGGGEEC---
T ss_pred c-----ccccceeEEEeccc
Confidence 5 34555666666555
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=4e-24 Score=233.28 Aligned_cols=272 Identities=13% Similarity=0.067 Sum_probs=128.2
Q ss_pred ccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcC
Q 045877 428 FSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKE 507 (801)
Q Consensus 428 L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~ 507 (801)
.++++|+++.++...+ .+|+.|.+.+|.+..+++..|.++++|++|+|++|.++. ..+..|.++++
T Consensus 36 c~~~~~~l~~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~~~~~l~~ 101 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-----------IEEDSFSSLGS 101 (353)
T ss_dssp EECCSTTCSSCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-----------ECTTTTTTCTT
T ss_pred eeCCCCCccccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-----------cCHhhcCCCCC
Confidence 3445555554433222 245555555555555555555555556666665555532 11334555555
Q ss_pred CceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcc--cccCCCCCCEEcccCCc-cccCCCcccCCCCcccccc
Q 045877 508 LRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPD--EIGKLKSLTHLDISECF-LLDGIPKKLSLLSKLQVLK 584 (801)
Q Consensus 508 L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~--~~~~L~~L~~L~Ls~n~-l~~~~p~~~~~L~~L~~L~ 584 (801)
|++|+|++|.+.+..+..++++++|++|+|++|.+. .+|. .+..+++|++|++++|. +....+..|+.+++|++|+
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 666666555433322233555556666666555333 2332 45555556666665553 3333344555555555555
Q ss_pred cccccCCcchhhhhhcc-cCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCC--C
Q 045877 585 GFVISDHAEDDRRWKRW-CSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQ--T 661 (801)
Q Consensus 585 ~~~l~~n~~~~~~~~~~-~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~--~ 661 (801)
+++|. .. ..+..+..+++|++|++++|.+.... ...+..+++|+.|++++|.+.+......... .
T Consensus 181 ---l~~n~-------l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~ 248 (353)
T 2z80_A 181 ---IDASD-------LQSYEPKSLKSIQNVSHLILHMKQHILLL--EIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248 (353)
T ss_dssp ---EEETT-------CCEECTTTTTTCSEEEEEEEECSCSTTHH--HHHHHHTTTEEEEEEESCBCTTCCCC------CC
T ss_pred ---CCCCC-------cCccCHHHHhccccCCeecCCCCccccch--hhhhhhcccccEEECCCCcccccccccccccccc
Confidence 44444 11 12445555556666666666554332 2233445566666666665554332211000 0
Q ss_pred Cccchhchhhhhccccc---ccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCC
Q 045877 662 GRKDNFFIKTLTKFRTR---VTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSL 728 (801)
Q Consensus 662 ~~~~~~~l~~L~~~~~~---l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~ 728 (801)
.......++.+....+. ++..... .++|+.|+|++|.+..+|.+++ ..+++|++|+|++|.+.+.
T Consensus 249 ~~l~~l~L~~~~l~~~~l~~l~~~l~~-l~~L~~L~Ls~N~l~~i~~~~~-~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 249 SLIKKFTFRNVKITDESLFQVMKLLNQ-ISGLLELEFSRNQLKSVPDGIF-DRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCCCEEEEESCBCCHHHHHHHHHHHHT-CTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCBCCC
T ss_pred chhhccccccccccCcchhhhHHHHhc-ccCCCEEECCCCCCCccCHHHH-hcCCCCCEEEeeCCCccCc
Confidence 00000000000000000 1111112 2466666666666666666542 3666666666666665543
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=3.2e-23 Score=244.01 Aligned_cols=348 Identities=18% Similarity=0.118 Sum_probs=219.7
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...|.++++|++|+|++|+|+++.+..|..+++|++|.+.+|.+..+++..|.++++|++|+|++|+++...
T Consensus 69 ~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~-------- 140 (635)
T 4g8a_A 69 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-------- 140 (635)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCST--------
T ss_pred HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCC--------
Confidence 457899999999999999999999999999999999999999999999999999999999999999986432
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCc-cCchhhcCCCCCCEEeccCCCCCCCCcccccCCCC-------------------
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQ-ELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKS------------------- 555 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~------------------- 555 (801)
+..|+++++|++|+|++|.+.. .+|..++.+++|++|+|++|.+.+..+..+..+.+
T Consensus 141 ---~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~ 217 (635)
T 4g8a_A 141 ---NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 217 (635)
T ss_dssp ---TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEEC
T ss_pred ---hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccC
Confidence 3458899999999999987654 46788899999999999998766554443332221
Q ss_pred --------------------------------------------------------------------------------
Q 045877 556 -------------------------------------------------------------------------------- 555 (801)
Q Consensus 556 -------------------------------------------------------------------------------- 555 (801)
T Consensus 218 ~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 297 (635)
T 4g8a_A 218 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDG 297 (635)
T ss_dssp TTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEE
T ss_pred cccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccc
Confidence
Q ss_pred --------------------------------CCEEcccCCccccCCCc-------------------ccCCCCcccccc
Q 045877 556 --------------------------------LTHLDISECFLLDGIPK-------------------KLSLLSKLQVLK 584 (801)
Q Consensus 556 --------------------------------L~~L~Ls~n~l~~~~p~-------------------~~~~L~~L~~L~ 584 (801)
|++|++.+|.+....+. ....+++|+.|+
T Consensus 298 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ 377 (635)
T 4g8a_A 298 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 377 (635)
T ss_dssp CTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEE
T ss_pred hhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccch
Confidence 22222222222111100 011234444444
Q ss_pred cccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCcc
Q 045877 585 GFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRK 664 (801)
Q Consensus 585 ~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 664 (801)
++.|.... ....+..+..+.+|+.|++..+..... ...+..+++|+.+++..+......+.....
T Consensus 378 ---ls~n~l~~----~~~~~~~~~~~~~L~~L~~~~~~~~~~---~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~----- 442 (635)
T 4g8a_A 378 ---LSRNGLSF----KGCCSQSDFGTISLKYLDLSFNGVITM---SSNFLGLEQLEHLDFQHSNLKQMSEFSVFL----- 442 (635)
T ss_dssp ---CCSSCCBE----EEECCHHHHSCSCCCEEECCSCSEEEE---CSCCTTCTTCCEEECTTSEEESTTSSCTTT-----
T ss_pred ---hhcccccc----ccccccchhhhhhhhhhhccccccccc---cccccccccccchhhhhccccccccccccc-----
Confidence 55554100 112233455667777777777765443 234556667777777665544332211100
Q ss_pred chhchhhhhcccccccccc---cccCCCccEEEccCCCCC--CCCcccCCCCCCCccEEEeeCCcCCCCCCCccccccee
Q 045877 665 DNFFIKTLTKFRTRVTERS---QHVESKLEKLDFQCFPDE--KLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVL 739 (801)
Q Consensus 665 ~~~~l~~L~~~~~~l~~~~---~~~~~~L~~L~L~~n~~~--~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l 739 (801)
....+..++...+.+.... ....+.|+.|+|++|... ..|..+. .+++|++|+|++|+|+++++..| -
T Consensus 443 ~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~--~l~~L~~L~Ls~N~L~~l~~~~f-----~ 515 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT--ELRNLTFLDLSQCQLEQLSPTAF-----N 515 (635)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT--TCTTCCEEECTTSCCCEECTTTT-----T
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhh--hccccCEEECCCCccCCcChHHH-----c
Confidence 1112222222222222111 112357778888776432 2455554 77788888888888877777666 3
Q ss_pred cccccccccccccccc-------CcCCCCceeeccCCCCCcccCCCCCccccc-CCcceEeCCCcccc
Q 045877 740 RLKYLNELKIDWKGLQ-------ELFPKLEYLEKFKCHKVTLCPCDGYGIWEK-SDLINLNNSKQQHR 799 (801)
Q Consensus 740 ~L~~L~~L~l~~n~l~-------~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~-~~L~~LdlS~~~~~ 799 (801)
.+.+|+.|+|++|.++ +.+++|+.|+++++ +++.++. ..+..+ ++|++|||++|.+.
T Consensus 516 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~--~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKK--QELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCS--SCTTCCCTTCCEEECTTCCBC
T ss_pred CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCC-cCCCCCH--HHHHhhhCcCCEEEeeCCCCc
Confidence 4566677777777665 23456666666665 4555443 244455 57888888888764
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=7.8e-23 Score=220.53 Aligned_cols=178 Identities=19% Similarity=0.189 Sum_probs=96.1
Q ss_pred cCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhh
Q 045877 447 GRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526 (801)
Q Consensus 447 ~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i 526 (801)
.+++.|.+.+|.+..+++ .+.++++|++|+|++|.++ .+|..++++++|++|+|++|.+. .+|..+
T Consensus 81 ~~l~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~------------~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l 146 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLM------------ELPDTMQQFAGLETLTLARNPLR-ALPASI 146 (328)
T ss_dssp TTCCEEEEESSCCSSCCS-CGGGGTTCSEEEEESSCCC------------CCCSCGGGGTTCSEEEEESCCCC-CCCGGG
T ss_pred cceeEEEccCCCchhcCh-hhhhCCCCCEEECCCCCcc------------chhHHHhccCCCCEEECCCCccc-cCcHHH
Confidence 345555555555554332 2444666666666666552 33445556666666666665433 556566
Q ss_pred cCCCCCCEEeccCCCCCCCCcccccC---------CCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhh
Q 045877 527 SYLTSLEILDLRACYNLDKLPDEIGK---------LKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRR 597 (801)
Q Consensus 527 ~~L~~L~~L~Ls~n~~~~~lp~~~~~---------L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~ 597 (801)
+++++|++|+|++|+..+.+|..++. +++|++|++++|.+. .+|..++.+++|++|+ +++|.
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~---L~~N~----- 217 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLK---IRNSP----- 217 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEE---EESSC-----
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEE---ccCCC-----
Confidence 66666666666665566666555443 555566665555544 4555555555555555 45554
Q ss_pred hhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCC
Q 045877 598 WKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSA 651 (801)
Q Consensus 598 ~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 651 (801)
...++..++.+++|++|+|++|.+.+.. +..+.++++|+.|+|++|.+.+
T Consensus 218 --l~~l~~~l~~l~~L~~L~Ls~n~~~~~~--p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 218 --LSALGPAIHHLPKLEELDLRGCTALRNY--PPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp --CCCCCGGGGGCTTCCEEECTTCTTCCBC--CCCTTCCCCCCEEECTTCTTCC
T ss_pred --CCcCchhhccCCCCCEEECcCCcchhhh--HHHhcCCCCCCEEECCCCCchh
Confidence 3334444555555555555555544443 4445555555555555554443
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=8e-23 Score=218.29 Aligned_cols=252 Identities=16% Similarity=0.100 Sum_probs=202.0
Q ss_pred cccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCc
Q 045877 427 NFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMK 506 (801)
Q Consensus 427 ~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~ 506 (801)
.++.+++.++.++...+ ++++.|.+.+|.+..+++..|.++++|++|+|++|.++.. ...+..+..++
T Consensus 11 ~l~c~~~~l~~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~~~~~ 78 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK---------GCCSQSDFGTT 78 (306)
T ss_dssp EEECCSSCCSSCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE---------EEEEHHHHSCS
T ss_pred EEEcCCCCcccCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc---------cCccccccccc
Confidence 46677777766654332 5789999999999999888899999999999999988531 12356677899
Q ss_pred CCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCc-ccccCCCCCCEEcccCCccccCCCcccCCCCccccccc
Q 045877 507 ELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLP-DEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKG 585 (801)
Q Consensus 507 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp-~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~ 585 (801)
+|++|+|++|. +..+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 79 ~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~- 156 (306)
T 2z66_A 79 SLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK- 156 (306)
T ss_dssp CCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE-
T ss_pred ccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE-
Confidence 99999999984 55788889999999999999997665544 5789999999999999999888888899999999999
Q ss_pred ccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccc
Q 045877 586 FVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKD 665 (801)
Q Consensus 586 ~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 665 (801)
+++|. +.....+..+..+++|++|++++|.+.... +..+..+++|+.|++++|.+.+.....
T Consensus 157 --l~~n~-----l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~--------- 218 (306)
T 2z66_A 157 --MAGNS-----FQENFLPDIFTELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNNFFSLDTFP--------- 218 (306)
T ss_dssp --CTTCE-----EGGGEECSCCTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCSBCCSGG---------
T ss_pred --CCCCc-----cccccchhHHhhCcCCCEEECCCCCcCCcC--HHHhcCCCCCCEEECCCCccCccChhh---------
Confidence 88887 222235778999999999999999998776 678899999999999999987643211
Q ss_pred hhchhhhhcccccccccccccCCCccEEEccCCCCCCCC-cccCCCCC-CCccEEEeeCCcCCCCCC
Q 045877 666 NFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLP-SWVHPYSF-KNLKNLYIRGGRLNSLEG 730 (801)
Q Consensus 666 ~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp-~~l~~~~l-~~L~~L~L~~n~l~~~~~ 730 (801)
... .++|+.|+|++|.+...+ ..+. .+ ++|++|+|++|.+++...
T Consensus 219 -----------------~~~-l~~L~~L~L~~N~l~~~~~~~~~--~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 219 -----------------YKC-LNSLQVLDYSLNHIMTSKKQELQ--HFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp -----------------GTT-CTTCCEEECTTSCCCBCSSSSCC--CCCTTCCEEECTTCCEECSGG
T ss_pred -----------------ccC-cccCCEeECCCCCCcccCHHHHH--hhhccCCEEEccCCCeecccC
Confidence 111 368999999999887654 4444 67 499999999999877643
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=2.3e-23 Score=227.29 Aligned_cols=231 Identities=18% Similarity=0.115 Sum_probs=173.3
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
++|++|++++|+|+++.+..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|.++... +..+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------~~~~ 120 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-----------SSWF 120 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-----------HHHH
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-----------HhHh
Confidence 47888899999988888888888888999998888888888888888889999999988885321 3447
Q ss_pred cCCcCCceEeecCCCCCccCch--hhcCCCCCCEEeccCCCC-CCCCcccccCCCCCCEEcccCCccccCCCcccCCCCc
Q 045877 503 KNMKELRLLSLQGMSGIQELPS--EISYLTSLEILDLRACYN-LDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSK 579 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~--~i~~L~~L~~L~Ls~n~~-~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~ 579 (801)
.++++|++|+|++|.+ ..+|. .++.+++|++|++++|.. ....+..++++++|++|++++|.+.+..|..++.+++
T Consensus 121 ~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 199 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN 199 (353)
T ss_dssp TTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred CCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcccc
Confidence 8888899999988754 45554 678888999999988853 4444567888888999999988888877888888888
Q ss_pred ccccccccccCCcchhhhhhcccCcc-cccCCccCCeeEeeccccccccc-----------------------------C
Q 045877 580 LQVLKGFVISDHAEDDRRWKRWCSLK-DLEKLEHLRKLTININSEKFQTE-----------------------------N 629 (801)
Q Consensus 580 L~~L~~~~l~~n~~~~~~~~~~~~~~-~l~~L~~L~~L~L~~n~~~~~~~-----------------------------~ 629 (801)
|++|+ +++|. ....+. .+..+++|+.|++++|.+..... .
T Consensus 200 L~~L~---l~~n~-------l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 200 VSHLI---LHMKQ-------HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp EEEEE---EECSC-------STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred CCeec---CCCCc-------cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 88888 77776 333333 23457788888888887765320 1
Q ss_pred hhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCC
Q 045877 630 LSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEK 702 (801)
Q Consensus 630 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~ 702 (801)
+..+..+++|+.|++++|.+....... ... .++|++|+|++|.+..
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~~i~~~~--------------------------~~~-l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLKSVPDGI--------------------------FDR-LTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCCCCCTTT--------------------------TTT-CTTCCEEECCSSCBCC
T ss_pred HHHHhcccCCCEEECCCCCCCccCHHH--------------------------Hhc-CCCCCEEEeeCCCccC
Confidence 345677888888888888877433211 112 3789999999997653
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.3e-22 Score=218.70 Aligned_cols=209 Identities=21% Similarity=0.197 Sum_probs=147.4
Q ss_pred cCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcc
Q 045877 469 KLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPD 548 (801)
Q Consensus 469 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~ 548 (801)
....++.|+|++|.++ .+|..+.++++|++|+|++|.+. .+|..++++++|++|+|++|.+. .+|.
T Consensus 79 ~~~~l~~L~L~~n~l~------------~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~ 144 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP------------QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPA 144 (328)
T ss_dssp TSTTCCEEEEESSCCS------------SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCG
T ss_pred cccceeEEEccCCCch------------hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcH
Confidence 3578999999999984 55777888999999999998665 89999999999999999999766 8899
Q ss_pred cccCCCCCCEEcccCCccccCCCcccCC---------CCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEee
Q 045877 549 EIGKLKSLTHLDISECFLLDGIPKKLSL---------LSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTIN 619 (801)
Q Consensus 549 ~~~~L~~L~~L~Ls~n~l~~~~p~~~~~---------L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~ 619 (801)
.++++++|++|++++|.+.+.+|..++. +++|++|+ +++|. ...++..++.+++|++|+|+
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~---L~~n~-------l~~lp~~l~~l~~L~~L~L~ 214 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR---LEWTG-------IRSLPASIANLQNLKSLKIR 214 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEE---EEEEC-------CCCCCGGGGGCTTCCEEEEE
T ss_pred HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEE---CcCCC-------cCcchHhhcCCCCCCEEEcc
Confidence 9999999999999999999999887654 66666666 55555 33455556666666666666
Q ss_pred cccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCC-
Q 045877 620 INSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCF- 698 (801)
Q Consensus 620 ~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n- 698 (801)
+|.+.+. +..+..+++|+.|+|++|.+.+..+..+ .. .++|+.|+|++|
T Consensus 215 ~N~l~~l---~~~l~~l~~L~~L~Ls~n~~~~~~p~~~--------------------------~~-l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 215 NSPLSAL---GPAIHHLPKLEELDLRGCTALRNYPPIF--------------------------GG-RAPLKRLILKDCS 264 (328)
T ss_dssp SSCCCCC---CGGGGGCTTCCEEECTTCTTCCBCCCCT--------------------------TC-CCCCCEEECTTCT
T ss_pred CCCCCcC---chhhccCCCCCEEECcCCcchhhhHHHh--------------------------cC-CCCCCEEECCCCC
Confidence 6666543 3346666666666666666554433211 11 245666666653
Q ss_pred CCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcc
Q 045877 699 PDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEW 733 (801)
Q Consensus 699 ~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f 733 (801)
....+|.++. .+++|++|+|++|.+.+..+..+
T Consensus 265 ~~~~~p~~~~--~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 265 NLLTLPLDIH--RLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp TCCBCCTTGG--GCTTCCEEECTTCTTCCCCCGGG
T ss_pred chhhcchhhh--cCCCCCEEeCCCCCchhhccHHH
Confidence 3444555554 66666666666666555555444
No 52
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.88 E-value=1.6e-24 Score=249.95 Aligned_cols=188 Identities=14% Similarity=0.179 Sum_probs=143.3
Q ss_pred CCCcceeecCcchhhHhhhhccceeeCCCCChhH---HHHHHHHhhhcccccccccccchhhhhHHHHHhhhccCCccch
Q 045877 91 ISSSEQIKKNEEKDASEADQSVQVHPLNQLDHDL---IYMQYALKRLKGFEGTFGKSIQDLKDDLELVLTSQATGSKSVQ 167 (801)
Q Consensus 91 ~~s~~~vttr~~~~~~~~~~~~~~~~l~~l~~~~---lf~~~af~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (801)
.|++|+||||.+.++..++....+|+|++|+.+| ||.++||....
T Consensus 264 ~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-------------------------------- 311 (549)
T 2a5y_B 264 LRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-------------------------------- 311 (549)
T ss_dssp TTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC---------------------------------
T ss_pred CCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC--------------------------------
Confidence 6899999999999998776455789999999998 88877665321
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCCcc---cCCCCCchhHHhhhc--cCCCCCCCCccccccccchhHHHHHHhhhccC-
Q 045877 168 EVETLQDEIRRISQKFLNLKSKIPPVN---SSSSDDSDAQQRRRI--NQSKDLPNMADKTRFKEHDFFIEFKKIFQSLG- 241 (801)
Q Consensus 168 ~~~~~~~~~~~~~~~i~~kc~GlPlai---~~~l~~~~~~~W~~~--l~~~~~~~~~~~~~~~~~~i~~~L~~SYd~L~- 241 (801)
++++.+++++|+++|+|+|||| |..+..+ .|+.+ +... ... ....+|..+|++||++||
T Consensus 312 -----~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~---~w~~~~~l~~~-l~~------~~~~~i~~~l~~Sy~~L~~ 376 (549)
T 2a5y_B 312 -----GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK---TFEKMAQLNNK-LES------RGLVGVECITPYSYKSLAM 376 (549)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS---SHHHHHHHHHH-HHH------HCSSTTCCCSSSSSSSHHH
T ss_pred -----chhHHHHHHHHHHHhCCChHHHHHHHHHhccc---hHHHHHHhHHH-hhc------ccHHHHHHHHhcccccccH
Confidence 2568889999999999999995 3333333 34432 2211 000 011348889999999999
Q ss_pred CCccccc-----------eecccCCCceechhhHHHHHHHc--CCCcccccCCCChHHHHHHHHHHHHhcCccccccccc
Q 045877 242 NDQSCLL-----------CFAVFPENAVIKKRLLVNWWIGE--GFLKERIQGENSAEKAADKLLREFEEKGFILPVDKKH 308 (801)
Q Consensus 242 ~~K~cFl-----------~~a~Fp~~~~i~~~~Li~~wia~--g~i~~~~~~~~~~~~~~~~~~~~L~~r~ll~~~~~~~ 308 (801)
++|.||+ |||+||+++.|+ |++|+|+ ||+.....+ .+.+++++ ||++|+++|||+....+
T Consensus 377 ~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~-~~~~~~~~-~l~~L~~rsLl~~~~~~- 449 (549)
T 2a5y_B 377 ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEE-QLDDEVAD-RLKRLSKRGALLSGKRM- 449 (549)
T ss_dssp HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------C-CCTHHHHH-HHHHTTTBSSCSEEECS-
T ss_pred HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCC-CCHHHHHH-HHHHHHHcCCeeEecCC-
Confidence 9999999 999999999999 8999999 999876533 78899998 99999999999987653
Q ss_pred CCccceEEechhHHHHHHHHhhcCCc
Q 045877 309 RGVANSFRMSPLVRSAVITLAKENNF 334 (801)
Q Consensus 309 ~~~~~~~~mHdlv~dl~~~~a~~e~f 334 (801)
...+|+|||+|||+|+.++.++++
T Consensus 450 --~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 450 --PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp --SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred --CceEEEeChHHHHHHHHHHHHHHH
Confidence 345899999999999999987654
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=5.7e-22 Score=222.99 Aligned_cols=245 Identities=16% Similarity=0.112 Sum_probs=159.5
Q ss_pred cccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCc
Q 045877 427 NFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMK 506 (801)
Q Consensus 427 ~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~ 506 (801)
.++.+++.++.++.... ..++.|.+.+|.+..+.+..|.++++|++|+|++|.++.. .+..|.+++
T Consensus 47 ~v~c~~~~l~~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-----------~~~~~~~l~ 112 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI-----------EIGAFNGLA 112 (440)
T ss_dssp EEECCSCCCSSCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE-----------CGGGGTTCS
T ss_pred EEEeCCCCcCcCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc-----------ChhhccCCc
Confidence 34455555554443222 4566677777777776667777777777777777766421 245666777
Q ss_pred CCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCc-ccCCCCccccccc
Q 045877 507 ELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPK-KLSLLSKLQVLKG 585 (801)
Q Consensus 507 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~-~~~~L~~L~~L~~ 585 (801)
+|++|+|++|.+....+..|..+++|++|+|++|.+....+..|.++++|++|++++|...+.++. .|..+++|++|+
T Consensus 113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~- 191 (440)
T 3zyj_A 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN- 191 (440)
T ss_dssp SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE-
T ss_pred cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec-
Confidence 777777777654443344567777777777777765555555667777777777777544444443 466777777777
Q ss_pred ccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccc
Q 045877 586 FVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKD 665 (801)
Q Consensus 586 ~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 665 (801)
+++|. ...+ ..+..+++|+.|+|++|.+.... +..|.++++|+.|+|++|.+.+..+..+
T Consensus 192 --L~~n~-------l~~~-~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------- 251 (440)
T 3zyj_A 192 --LAMCN-------LREI-PNLTPLIKLDELDLSGNHLSAIR--PGSFQGLMHLQKLWMIQSQIQVIERNAF-------- 251 (440)
T ss_dssp --CTTSC-------CSSC-CCCTTCSSCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCCCEECTTSS--------
T ss_pred --CCCCc-------Cccc-cccCCCcccCEEECCCCccCccC--hhhhccCccCCEEECCCCceeEEChhhh--------
Confidence 66666 3323 34677777888888888777665 6677778888888888887765433221
Q ss_pred hhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCC
Q 045877 666 NFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLN 726 (801)
Q Consensus 666 ~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~ 726 (801)
.. .++|+.|+|++|.+..+|...+ ..+++|+.|+|++|.+.
T Consensus 252 ------------------~~-l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 252 ------------------DN-LQSLVEINLAHNNLTLLPHDLF-TPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ------------------TT-CTTCCEEECTTSCCCCCCTTTT-SSCTTCCEEECCSSCEE
T ss_pred ------------------cC-CCCCCEEECCCCCCCccChhHh-ccccCCCEEEcCCCCcc
Confidence 11 2578888888887777776544 47788888888888754
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=6.7e-22 Score=223.24 Aligned_cols=246 Identities=18% Similarity=0.099 Sum_probs=156.5
Q ss_pred ccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcC
Q 045877 428 FSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKE 507 (801)
Q Consensus 428 L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~ 507 (801)
++.+++.++.++... ..+++.|.+.+|.+..+.+..|.++++|++|+|++|.++.. .+..|.++++
T Consensus 59 v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-----------~~~~~~~l~~ 124 (452)
T 3zyi_A 59 VVCTRRGLSEVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI-----------EVGAFNGLAS 124 (452)
T ss_dssp EECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-----------CTTTTTTCTT
T ss_pred EEECCCCcCccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc-----------ChhhccCccc
Confidence 444444454433222 14566666666666666666677777777777777766421 2355666777
Q ss_pred CceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCc-ccCCCCcccccccc
Q 045877 508 LRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPK-KLSLLSKLQVLKGF 586 (801)
Q Consensus 508 L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~-~~~~L~~L~~L~~~ 586 (801)
|++|+|++|.+....+..+..+++|++|+|++|.+....+..|.++++|++|++++|...+.++. .|..+++|++|+
T Consensus 125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~-- 202 (452)
T 3zyi_A 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN-- 202 (452)
T ss_dssp CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE--
T ss_pred CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE--
Confidence 77777777654444444566677777777777665544445666677777777776544444443 466677777776
Q ss_pred cccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccch
Q 045877 587 VISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDN 666 (801)
Q Consensus 587 ~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 666 (801)
+++|. .... ..+..+++|+.|+|++|.+.... +..|.++++|+.|+|++|.+.+..+..+
T Consensus 203 -L~~n~-------l~~~-~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------- 262 (452)
T 3zyi_A 203 -LGMCN-------IKDM-PNLTPLVGLEELEMSGNHFPEIR--PGSFHGLSSLKKLWVMNSQVSLIERNAF--------- 262 (452)
T ss_dssp -CTTSC-------CSSC-CCCTTCTTCCEEECTTSCCSEEC--GGGGTTCTTCCEEECTTSCCCEECTTTT---------
T ss_pred -CCCCc-------cccc-ccccccccccEEECcCCcCcccC--cccccCccCCCEEEeCCCcCceECHHHh---------
Confidence 66665 2222 35667777888888888777665 6677788888888888887765433221
Q ss_pred hchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCC
Q 045877 667 FFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSL 728 (801)
Q Consensus 667 ~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~ 728 (801)
.. .++|+.|+|++|.+..+|...+ ..+++|+.|+|++|.+...
T Consensus 263 -----------------~~-l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 263 -----------------DG-LASLVELNLAHNNLSSLPHDLF-TPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp -----------------TT-CTTCCEEECCSSCCSCCCTTSS-TTCTTCCEEECCSSCEECS
T ss_pred -----------------cC-CCCCCEEECCCCcCCccChHHh-ccccCCCEEEccCCCcCCC
Confidence 11 2578888888887777776544 4778888888888875443
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=3.6e-23 Score=221.66 Aligned_cols=253 Identities=15% Similarity=0.087 Sum_probs=131.2
Q ss_pred hhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCC-Chhhhc-------cCCCCCEEEcCCcccCCCCCCc
Q 045877 419 FEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEF-KYDWFS-------KLEKIKVLYLGRWQSTVDDIPH 490 (801)
Q Consensus 419 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~f~-------~l~~L~~L~Ls~n~l~~~~~~~ 490 (801)
+...++|+.|++++|.+ ..|..+... ++.|.+.+|.+... .+..+. ++++|++|+|++|.+++
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~----- 109 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG----- 109 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS-----
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc-----
Confidence 45667778888887777 333333222 55556666555321 122222 45556666666665532
Q ss_pred ccccchhhhHhh--cCCcCCceEeecCCCCCccCchhhcCC-----CCCCEEeccCCCCCCCCcccccCCCCCCEEcccC
Q 045877 491 IEIESTDYLKGL--KNMKELRLLSLQGMSGIQELPSEISYL-----TSLEILDLRACYNLDKLPDEIGKLKSLTHLDISE 563 (801)
Q Consensus 491 ~~~~~~~lp~~l--~~l~~L~~L~Ls~n~~~~~lp~~i~~L-----~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~ 563 (801)
.+|..+ ..+++|++|+|++|.+.+. |..++.+ ++|++|+|++|.+.+..|..|+++++|++|++++
T Consensus 110 ------~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 182 (312)
T 1wwl_A 110 ------TAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182 (312)
T ss_dssp ------CCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCS
T ss_pred ------hhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCC
Confidence 123332 5555566666665544333 5445444 5555555555555444445555555555555555
Q ss_pred CccccC--CCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccC-hhhhhcccCCc
Q 045877 564 CFLLDG--IPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTEN-LSTVLAFKRLL 640 (801)
Q Consensus 564 n~l~~~--~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~-~~~l~~l~~L~ 640 (801)
|++.+. ++..+ .++.+++|++|++++|.+...... ...+.++++|+
T Consensus 183 N~l~~~~~~~~~~-------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~ 231 (312)
T 1wwl_A 183 NPELGERGLISAL-------------------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231 (312)
T ss_dssp CTTCHHHHHHHHS-------------------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCS
T ss_pred CCcCcchHHHHHH-------------------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCC
Confidence 554332 11111 124556666666666665532111 12334556666
Q ss_pred EEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEe
Q 045877 641 QLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYI 720 (801)
Q Consensus 641 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L 720 (801)
.|++++|.+.+..+... . ...++|+.|+|++|.++.+|.++. ++|++|+|
T Consensus 232 ~L~Ls~N~l~~~~~~~~------------------------~--~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~L 281 (312)
T 1wwl_A 232 GLDLSHNSLRDAAGAPS------------------------C--DWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDL 281 (312)
T ss_dssp EEECTTSCCCSSCCCSC------------------------C--CCCTTCCEEECTTSCCSSCCSSCC----SEEEEEEC
T ss_pred EEECCCCcCCcccchhh------------------------h--hhcCCCCEEECCCCccChhhhhcc----CCceEEEC
Confidence 66666666655332100 0 012466666666666666666543 56666666
Q ss_pred eCCcCCCCCCCcccccceecccccccccccccccc
Q 045877 721 RGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ 755 (801)
Q Consensus 721 ~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~ 755 (801)
++|+|++++. + ..+++|+.|++++|.++
T Consensus 282 s~N~l~~~p~--~-----~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 282 SYNRLDRNPS--P-----DELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CSSCCCSCCC--T-----TTSCEEEEEECTTCTTT
T ss_pred CCCCCCCChh--H-----hhCCCCCEEeccCCCCC
Confidence 6666666632 3 24455666666666554
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=3.9e-22 Score=212.94 Aligned_cols=230 Identities=17% Similarity=0.051 Sum_probs=195.8
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCC--hhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhH
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFK--YDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLK 500 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~ 500 (801)
++|++|+|++|+|+.+.+..|..+++|+.|.+.+|.+..+. +..+.++++|++|+|++|.++ .++.
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~------------~l~~ 95 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI------------TMSS 95 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE------------EEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc------------cChh
Confidence 57899999999999988888999999999999999987553 566778999999999999983 4567
Q ss_pred hhcCCcCCceEeecCCCCCccCc-hhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCcccc-CCCcccCCCC
Q 045877 501 GLKNMKELRLLSLQGMSGIQELP-SEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLD-GIPKKLSLLS 578 (801)
Q Consensus 501 ~l~~l~~L~~L~Ls~n~~~~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~-~~p~~~~~L~ 578 (801)
.+..+++|++|+|++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..++
T Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence 78999999999999986554433 578999999999999998888888889999999999999999876 6888999999
Q ss_pred cccccccccccCCcchhhhhhcccC-cccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCC
Q 045877 579 KLQVLKGFVISDHAEDDRRWKRWCS-LKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKP 657 (801)
Q Consensus 579 ~L~~L~~~~l~~n~~~~~~~~~~~~-~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 657 (801)
+|++|+ +++|. .... +..+..+++|++|++++|.+.... ...+..+++|+.|++++|.+.+..+..+
T Consensus 176 ~L~~L~---Ls~n~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 176 NLTFLD---LSQCQ-------LEQLSPTAFNSLSSLQVLNMSHNNFFSLD--TFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp TCCEEE---CTTSC-------CCEECTTTTTTCTTCCEEECTTSCCSBCC--SGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred CCCEEE---CCCCC-------cCCcCHHHhcCCCCCCEEECCCCccCccC--hhhccCcccCCEeECCCCCCcccCHHHH
Confidence 999999 88887 3333 568899999999999999998766 5678899999999999999987654322
Q ss_pred CCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCC
Q 045877 658 EPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEK 702 (801)
Q Consensus 658 ~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~ 702 (801)
..++++|+.|+|++|.+.-
T Consensus 244 --------------------------~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 244 --------------------------QHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp --------------------------CCCCTTCCEEECTTCCEEC
T ss_pred --------------------------HhhhccCCEEEccCCCeec
Confidence 2334689999999987653
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=2e-21 Score=205.28 Aligned_cols=226 Identities=16% Similarity=0.074 Sum_probs=157.8
Q ss_pred eeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCC
Q 045877 450 ETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYL 529 (801)
Q Consensus 450 ~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L 529 (801)
+++...++.+..++... .++|++|+|++|.++.. .+..|..+++|++|+|++|.+.+..|..++++
T Consensus 14 ~~~~c~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~-----------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 79 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHV-----------PAASFRACRNLTILWLHSNVLARIDAAAFTGL 79 (285)
T ss_dssp CEEECCSSCCSSCCTTC---CTTCSEEECTTSCCCEE-----------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred eEEEcCcCCcccCCcCC---CCCceEEEeeCCcCCcc-----------CHHHcccCCCCCEEECCCCccceeCHhhcCCc
Confidence 44555555665554322 35677777777777421 13456777777777777776655556777777
Q ss_pred CCCCEEeccCCC-CCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCc-ccc
Q 045877 530 TSLEILDLRACY-NLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSL-KDL 607 (801)
Q Consensus 530 ~~L~~L~Ls~n~-~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~-~~l 607 (801)
++|++|+|++|. +....|..+..+++|++|++++|.+.+..|..+..+++|++|+ +++|. ....+ ..|
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~---l~~n~-------l~~~~~~~~ 149 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY---LQDNA-------LQALPDDTF 149 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE---CCSSC-------CCCCCTTTT
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE---CCCCc-------ccccCHhHh
Confidence 778888887776 3333366777777788888887777766667777777777777 66666 33333 347
Q ss_pred cCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccC
Q 045877 608 EKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVE 687 (801)
Q Consensus 608 ~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~ 687 (801)
+.+++|++|++++|.+.... ...+..+++|+.|++++|.+.+..+..+ .. .
T Consensus 150 ~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------------------------~~-l 200 (285)
T 1ozn_A 150 RDLGNLTHLFLHGNRISSVP--ERAFRGLHSLDRLLLHQNRVAHVHPHAF--------------------------RD-L 200 (285)
T ss_dssp TTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCEECTTTT--------------------------TT-C
T ss_pred ccCCCccEEECCCCcccccC--HHHhcCccccCEEECCCCcccccCHhHc--------------------------cC-c
Confidence 78888888888888887665 4567888889999998888776533221 12 2
Q ss_pred CCccEEEccCCCCCCCCcc-cCCCCCCCccEEEeeCCcCCCCCC
Q 045877 688 SKLEKLDFQCFPDEKLPSW-VHPYSFKNLKNLYIRGGRLNSLEG 730 (801)
Q Consensus 688 ~~L~~L~L~~n~~~~lp~~-l~~~~l~~L~~L~L~~n~l~~~~~ 730 (801)
++|+.|+|++|.+..++.. +. .+++|++|+|++|.+.....
T Consensus 201 ~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 201 GRLMTLYLFANNLSALPTEALA--PLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTCCEEECCSSCCSCCCHHHHT--TCTTCCEEECCSSCEECSGG
T ss_pred ccccEeeCCCCcCCcCCHHHcc--cCcccCEEeccCCCccCCCC
Confidence 6889999999888887754 44 89999999999998876543
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=3.2e-21 Score=216.83 Aligned_cols=248 Identities=15% Similarity=0.087 Sum_probs=199.1
Q ss_pred CceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhc
Q 045877 448 RIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEIS 527 (801)
Q Consensus 448 ~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~ 527 (801)
....+...++.+..++.... +++++|+|++|.++.. .+..|.++++|++|+|++|.+.+..+..|.
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~---~~l~~L~L~~n~i~~~-----------~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~ 109 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS---TNTRLLNLHENQIQII-----------KVNSFKHLRHLEILQLSRNHIRTIEIGAFN 109 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC---TTCSEEECCSCCCCEE-----------CTTTTSSCSSCCEEECCSSCCCEECGGGGT
T ss_pred CCCEEEeCCCCcCcCCCCCC---CCCcEEEccCCcCCee-----------CHHHhhCCCCCCEEECCCCcCCccChhhcc
Confidence 34567777778887765443 6799999999998532 246789999999999999977777778999
Q ss_pred CCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccC-ccc
Q 045877 528 YLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCS-LKD 606 (801)
Q Consensus 528 ~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~-~~~ 606 (801)
++++|++|+|++|.+....+..|..+++|++|+|++|.+....+..|..+++|++|+ ++++. . ...+ ...
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~---l~~~~-----~-l~~i~~~~ 180 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD---LGELK-----R-LSYISEGA 180 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE---CCCCT-----T-CCEECTTT
T ss_pred CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeC---CCCCC-----C-cceeCcch
Confidence 999999999999977766666899999999999999998877777899999999999 77643 0 2222 346
Q ss_pred ccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhccccccccccccc
Q 045877 607 LEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHV 686 (801)
Q Consensus 607 l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~ 686 (801)
|.++++|++|+|++|.+... ..+..+++|+.|+|++|.+.+..+..+ ..
T Consensus 181 ~~~l~~L~~L~L~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~--------------------------~~- 229 (440)
T 3zyj_A 181 FEGLSNLRYLNLAMCNLREI----PNLTPLIKLDELDLSGNHLSAIRPGSF--------------------------QG- 229 (440)
T ss_dssp TTTCSSCCEEECTTSCCSSC----CCCTTCSSCCEEECTTSCCCEECTTTT--------------------------TT-
T ss_pred hhcccccCeecCCCCcCccc----cccCCCcccCEEECCCCccCccChhhh--------------------------cc-
Confidence 88999999999999998754 357889999999999999886544322 12
Q ss_pred CCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccccc
Q 045877 687 ESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ 755 (801)
Q Consensus 687 ~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~ 755 (801)
.++|+.|+|++|.+..++...+ ..+++|++|+|++|+|+++++..| -.+.+|+.|++++|.+.
T Consensus 230 l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 230 LMHLQKLWMIQSQIQVIERNAF-DNLQSLVEINLAHNNLTLLPHDLF-----TPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTCCEEECTTCCCCEECTTSS-TTCTTCCEEECTTSCCCCCCTTTT-----SSCTTCCEEECCSSCEE
T ss_pred CccCCEEECCCCceeEEChhhh-cCCCCCCEEECCCCCCCccChhHh-----ccccCCCEEEcCCCCcc
Confidence 3799999999999888765443 489999999999999999988776 34566777777777764
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=1.1e-22 Score=217.88 Aligned_cols=206 Identities=18% Similarity=0.159 Sum_probs=127.2
Q ss_pred CCcCCceEeecCCCCCccCchhh--cCCCCCCEEeccCCCCCCCCcccccCC-----CCCCEEcccCCccccCCCcccCC
Q 045877 504 NMKELRLLSLQGMSGIQELPSEI--SYLTSLEILDLRACYNLDKLPDEIGKL-----KSLTHLDISECFLLDGIPKKLSL 576 (801)
Q Consensus 504 ~l~~L~~L~Ls~n~~~~~lp~~i--~~L~~L~~L~Ls~n~~~~~lp~~~~~L-----~~L~~L~Ls~n~l~~~~p~~~~~ 576 (801)
++++|++|+|++|.+.+.+|..+ +.+++|++|+|++|.+.+. |..++.+ ++|++|++++|++.+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~------ 165 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFS------ 165 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCC------
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccch------
Confidence 44555555555554444455443 4555555555555544333 4444444 44555555555433222
Q ss_pred CCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhh--hcccCCcEEEeeccCCCCCCC
Q 045877 577 LSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTV--LAFKRLLQLKVSWGGGSANKS 654 (801)
Q Consensus 577 L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~ 654 (801)
+..|+.+++|++|++++|++.+....+..+ ..+++|++|++++|.+.+...
T Consensus 166 ---------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 218 (312)
T 1wwl_A 166 ---------------------------CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218 (312)
T ss_dssp ---------------------------TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH
T ss_pred ---------------------------HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH
Confidence 245666777777788877765432113333 889999999999998874210
Q ss_pred CCCCCCCCccchhchhhhhccccccc-ccccccCCCccEEEccCCCCCCCCc-ccCCCCCCCccEEEeeCCcCCCCCCCc
Q 045877 655 TKPEPQTGRKDNFFIKTLTKFRTRVT-ERSQHVESKLEKLDFQCFPDEKLPS-WVHPYSFKNLKNLYIRGGRLNSLEGSE 732 (801)
Q Consensus 655 ~~~~~~~~~~~~~~l~~L~~~~~~l~-~~~~~~~~~L~~L~L~~n~~~~lp~-~l~~~~l~~L~~L~L~~n~l~~~~~~~ 732 (801)
+. ..... .++|+.|+|++|.+...+. ... ..+++|++|+|++|.|+.++...
T Consensus 219 ------------------------~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~Ls~N~l~~ip~~~ 272 (312)
T 1wwl_A 219 ------------------------VCSALAAA-RVQLQGLDLSHNSLRDAAGAPSC-DWPSQLNSLNLSFTGLKQVPKGL 272 (312)
T ss_dssp ------------------------HHHHHHHT-TCCCSEEECTTSCCCSSCCCSCC-CCCTTCCEEECTTSCCSSCCSSC
T ss_pred ------------------------HHHHHHhc-CCCCCEEECCCCcCCcccchhhh-hhcCCCCEEECCCCccChhhhhc
Confidence 01 11111 3699999999999887552 222 37899999999999999776532
Q ss_pred ccccceeccccccccccccccccCcCCCCceeeccCCCCCcccCCCCCccc
Q 045877 733 WETVKVLRLKYLNELKIDWKGLQELFPKLEYLEKFKCHKVTLCPCDGYGIW 783 (801)
Q Consensus 733 f~~L~~l~L~~L~~L~l~~n~l~~~~p~L~~L~l~~c~~L~~lp~~~n~i~ 783 (801)
+ .+|+.|++++|.+++. |. +..+++|+.+.+.+|.+.
T Consensus 273 ~--------~~L~~L~Ls~N~l~~~-p~-----~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 273 P--------AKLSVLDLSYNRLDRN-PS-----PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp C--------SEEEEEECCSSCCCSC-CC-----TTTSCEEEEEECTTCTTT
T ss_pred c--------CCceEEECCCCCCCCC-hh-----HhhCCCCCEEeccCCCCC
Confidence 2 6788889999988743 43 456667777777766553
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=3.7e-24 Score=242.29 Aligned_cols=335 Identities=16% Similarity=0.078 Sum_probs=214.8
Q ss_pred hhhccccccccccchhhcch----hhhhhccccCceeeecCCcccCCCCh-hhhccCC----CCCEEEcCCcccCCCCCC
Q 045877 419 FEKIKKLFNFSLSLEEIENK----AKDCAMKRGRIETLFNVSEEFPEFKY-DWFSKLE----KIKVLYLGRWQSTVDDIP 489 (801)
Q Consensus 419 ~~~l~~L~~L~Ls~N~l~~~----~~~~~~~~~~L~~L~l~~n~i~~~~~-~~f~~l~----~L~~L~Ls~n~l~~~~~~ 489 (801)
+..+++|++|+|++|+|+.. ++..+..+++|++|.+.+|.+..... ..+..++ +|++|+|++|.++...
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~-- 101 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG-- 101 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGG--
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHH--
Confidence 67788888888888888753 45566667888888888887765433 2334455 6888888888774211
Q ss_pred cccccchhhhHhhcCCcCCceEeecCCCCCccCchhhc-----CCCCCCEEeccCCCCCCC----CcccccCCCCCCEEc
Q 045877 490 HIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEIS-----YLTSLEILDLRACYNLDK----LPDEIGKLKSLTHLD 560 (801)
Q Consensus 490 ~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~-----~L~~L~~L~Ls~n~~~~~----lp~~~~~L~~L~~L~ 560 (801)
...++..+..+++|++|+|++|.+....+..+. .+++|++|+|++|.+... ++..+..+++|++|+
T Consensus 102 -----~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 102 -----CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176 (461)
T ss_dssp -----HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred -----HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence 125677788888888888888765443333332 256788888888866553 355566778888888
Q ss_pred ccCCccccCCCcccC-----CCCcccccccccccCCcchhhhhhccc-----CcccccCCccCCeeEeeccccccccc--
Q 045877 561 ISECFLLDGIPKKLS-----LLSKLQVLKGFVISDHAEDDRRWKRWC-----SLKDLEKLEHLRKLTININSEKFQTE-- 628 (801)
Q Consensus 561 Ls~n~l~~~~p~~~~-----~L~~L~~L~~~~l~~n~~~~~~~~~~~-----~~~~l~~L~~L~~L~L~~n~~~~~~~-- 628 (801)
+++|.+....+..+. .+++|++|+ +++|. ... ++..+..+++|++|++++|.+.....
T Consensus 177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~---L~~n~-------l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 246 (461)
T 1z7x_W 177 VSNNDINEAGVRVLCQGLKDSPCQLEALK---LESCG-------VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE 246 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHHHSCCCCCEEE---CTTSC-------CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred CcCCCcchHHHHHHHHHHhcCCCCceEEE---ccCCC-------CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHH
Confidence 888876543333332 355778887 77666 222 34556678888888888887765320
Q ss_pred C-hhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCC-----
Q 045877 629 N-LSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEK----- 702 (801)
Q Consensus 629 ~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~----- 702 (801)
. ...+..+++|++|++++|.++... +.. +...... .++|+.|+|++|.+..
T Consensus 247 l~~~~~~~~~~L~~L~L~~n~l~~~~---------------~~~-------l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 247 LCPGLLHPSSRLRTLWIWECGITAKG---------------CGD-------LCRVLRA-KESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHH---------------HHH-------HHHHHHH-CTTCCEEECTTCCCHHHHHHH
T ss_pred HHHHHhcCCCCceEEECcCCCCCHHH---------------HHH-------HHHHHhh-CCCcceEECCCCCCchHHHHH
Confidence 0 111224778888888888765321 000 0111111 2689999999987642
Q ss_pred CCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceeccccccccccccccccC------------cCCCCceeeccCCC
Q 045877 703 LPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQE------------LFPKLEYLEKFKCH 770 (801)
Q Consensus 703 lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~~------------~~p~L~~L~l~~c~ 770 (801)
+...+. ...++|++|+|++|.+++.....++.. .-.+++|+.|++++|.+.+ ..++|++|++.+|
T Consensus 304 l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n- 380 (461)
T 1z7x_W 304 LCETLL-EPGCQLESLWVKSCSFTAACCSHFSSV-LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC- 380 (461)
T ss_dssp HHHHHT-STTCCCCEEECTTSCCBGGGHHHHHHH-HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-
T ss_pred HHHHhc-cCCccceeeEcCCCCCchHHHHHHHHH-HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC-
Confidence 222222 244789999999998876543222110 0234677777888887651 1568888888887
Q ss_pred CCc-----ccCCCCCcccccCCcceEeCCCcccc
Q 045877 771 KVT-----LCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 771 ~L~-----~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
+++ .++. .+..+++|++||+++|++.
T Consensus 381 ~i~~~~~~~l~~---~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 381 DVSDSSCSSLAA---TLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp CCCHHHHHHHHH---HHHHCCCCCEEECCSSSCC
T ss_pred CCChhhHHHHHH---HHHhCCCccEEECCCCCCC
Confidence 455 3443 4556788999999988764
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=3e-22 Score=214.98 Aligned_cols=258 Identities=13% Similarity=0.045 Sum_probs=202.3
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
.+++..+++.+.+.......+...++|+.|.+.+|.+..+.+..|.++++|++|+|++|.+++ .+. +
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------~~~-~ 76 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE------------TLD-L 76 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE------------EEE-E
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc------------chh-h
Confidence 356777899999998888888888999999999999999999999999999999999999843 222 8
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~ 582 (801)
..+++|++|+|++|.+ ..++ .+++|++|++++|.+.+..+. .+++|++|++++|.+.+..+..++.+++|++
T Consensus 77 ~~l~~L~~L~Ls~n~l-~~l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 148 (317)
T 3o53_A 77 ESLSTLRTLDLNNNYV-QELL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148 (317)
T ss_dssp TTCTTCCEEECCSSEE-EEEE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEE
T ss_pred hhcCCCCEEECcCCcc-cccc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCE
Confidence 8999999999999854 3333 458999999999976654433 4688999999999998877778999999999
Q ss_pred cccccccCCcchhhhhhcccC-cccc-cCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCC
Q 045877 583 LKGFVISDHAEDDRRWKRWCS-LKDL-EKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQ 660 (801)
Q Consensus 583 L~~~~l~~n~~~~~~~~~~~~-~~~l-~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 660 (801)
|+ +++|. .... +..+ ..+++|++|++++|.+.... ....+++|+.|+|++|.+.+..+
T Consensus 149 L~---Ls~N~-------l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~l~~L~~L~Ls~N~l~~l~~------ 208 (317)
T 3o53_A 149 LD---LKLNE-------IDTVNFAELAASSDTLEHLNLQYNFIYDVK----GQVVFAKLKTLDLSSNKLAFMGP------ 208 (317)
T ss_dssp EE---CTTSC-------CCEEEGGGGGGGTTTCCEEECTTSCCCEEE----CCCCCTTCCEEECCSSCCCEECG------
T ss_pred EE---CCCCC-------CCcccHHHHhhccCcCCEEECCCCcCcccc----cccccccCCEEECCCCcCCcchh------
Confidence 99 88887 3222 3344 47899999999999987653 23358899999999998875421
Q ss_pred CCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCC-CCCCCccccccee
Q 045877 661 TGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLN-SLEGSEWETVKVL 739 (801)
Q Consensus 661 ~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~-~~~~~~f~~L~~l 739 (801)
. ... .++|+.|+|++|.+..+|..+. .+++|+.|+|++|.+. +..+..+ .
T Consensus 209 --------------------~-~~~-l~~L~~L~L~~N~l~~l~~~~~--~l~~L~~L~l~~N~~~~~~~~~~~-----~ 259 (317)
T 3o53_A 209 --------------------E-FQS-AAGVTWISLRNNKLVLIEKALR--FSQNLEHFDLRGNGFHCGTLRDFF-----S 259 (317)
T ss_dssp --------------------G-GGG-GTTCSEEECTTSCCCEECTTCC--CCTTCCEEECTTCCCBHHHHHHHH-----H
T ss_pred --------------------h-hcc-cCcccEEECcCCcccchhhHhh--cCCCCCEEEccCCCccCcCHHHHH-----h
Confidence 1 112 3789999999999999998876 8999999999999987 3322222 2
Q ss_pred ccccccccccc
Q 045877 740 RLKYLNELKID 750 (801)
Q Consensus 740 ~L~~L~~L~l~ 750 (801)
.+..|+.|++.
T Consensus 260 ~~~~L~~l~l~ 270 (317)
T 3o53_A 260 KNQRVQTVAKQ 270 (317)
T ss_dssp TCHHHHHHHHH
T ss_pred ccccceEEECC
Confidence 34555555554
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=2.6e-21 Score=218.40 Aligned_cols=207 Identities=19% Similarity=0.149 Sum_probs=172.0
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
++++.|+|++|+|+++.+..|..+++|+.|.+.+|.+..+.+..|.++++|++|+|++|.++... +..|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------~~~~ 143 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-----------SGAF 143 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-----------TTTS
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-----------hhhh
Confidence 57889999999999999999999999999999999999988899999999999999999885321 3457
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcc-cccCCCCCCEEcccCCccccCCCcccCCCCccc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPD-EIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQ 581 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~-~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ 581 (801)
..+++|++|+|++|.+....+..+.++++|++|+|++|+.++.++. .|.++++|++|++++|.+.+ +| .+..+++|+
T Consensus 144 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~ 221 (452)
T 3zyi_A 144 EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLE 221 (452)
T ss_dssp SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCC
T ss_pred cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-ccccccccc
Confidence 8899999999999866555556788999999999998777776665 58889999999999998764 44 588888899
Q ss_pred ccccccccCCcchhhhhhccc-CcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCC
Q 045877 582 VLKGFVISDHAEDDRRWKRWC-SLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKS 654 (801)
Q Consensus 582 ~L~~~~l~~n~~~~~~~~~~~-~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 654 (801)
.|+ +++|. ... .+..|..+++|+.|+|++|.+.... +..|.++++|+.|+|++|.+.+...
T Consensus 222 ~L~---Ls~N~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~ 283 (452)
T 3zyi_A 222 ELE---MSGNH-------FPEIRPGSFHGLSSLKKLWVMNSQVSLIE--RNAFDGLASLVELNLAHNNLSSLPH 283 (452)
T ss_dssp EEE---CTTSC-------CSEECGGGGTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred EEE---CcCCc-------CcccCcccccCccCCCEEEeCCCcCceEC--HHHhcCCCCCCEEECCCCcCCccCh
Confidence 988 88887 333 3567889999999999999988776 6778889999999999998886543
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=4.1e-21 Score=202.85 Aligned_cols=208 Identities=15% Similarity=0.052 Sum_probs=183.9
Q ss_pred ccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcc-cCCCCCCcccccchhhhH
Q 045877 422 IKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQ-STVDDIPHIEIESTDYLK 500 (801)
Q Consensus 422 l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~lp~ 500 (801)
.++|++|+|++|+|+++.+..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|. +... .+.
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-----------~~~ 99 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-----------DPA 99 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-----------CTT
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-----------CHH
Confidence 4689999999999999999999999999999999999999999999999999999999997 6422 266
Q ss_pred hhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcc
Q 045877 501 GLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL 580 (801)
Q Consensus 501 ~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L 580 (801)
.+..+++|++|+|++|.+.+..|..+.++++|++|+|++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence 78999999999999998777778889999999999999998777666779999999999999999887666679999999
Q ss_pred cccccccccCCcchhhhhhccc-CcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCC
Q 045877 581 QVLKGFVISDHAEDDRRWKRWC-SLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSAN 652 (801)
Q Consensus 581 ~~L~~~~l~~n~~~~~~~~~~~-~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 652 (801)
++|+ +++|. ... .+..+..+++|+.|++++|.+.... +..+..+++|+.|++++|.+...
T Consensus 180 ~~L~---l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 180 DRLL---LHQNR-------VAHVHPHAFRDLGRLMTLYLFANNLSALP--TEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp CEEE---CCSSC-------CCEECTTTTTTCTTCCEEECCSSCCSCCC--HHHHTTCTTCCEEECCSSCEECS
T ss_pred CEEE---CCCCc-------ccccCHhHccCcccccEeeCCCCcCCcCC--HHHcccCcccCEEeccCCCccCC
Confidence 9999 88887 333 3678999999999999999998765 67799999999999999988753
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=3.8e-20 Score=215.05 Aligned_cols=219 Identities=19% Similarity=0.082 Sum_probs=137.6
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
..++.|++++|.|+.++...+ ++|+.|.+.+|.+..++. .+++|++|+|++|.++. +|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~------------lp~-- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS------------LPV-- 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSC------------CCC--
T ss_pred CCCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCc------------CCC--
Confidence 357778888888775443332 577777777777776654 46777777887777742 232
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~ 582 (801)
.+++|++|+|++|. +..+|. .+.+|++|+|++|.+. .+|.. +++|++|++++|.+.+ +|.. +.+|+.
T Consensus 99 -~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~~---~~~L~~ 165 (622)
T 3g06_A 99 -LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCK 165 (622)
T ss_dssp -CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCCC---CTTCCE
T ss_pred -CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCC-cCCc---cCCCCE
Confidence 56777777777764 344554 5677777777777543 35543 3677777777777653 4432 345556
Q ss_pred cccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCC
Q 045877 583 LKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTG 662 (801)
Q Consensus 583 L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 662 (801)
|+ +++|. +..++ ..+++|+.|++++|.+.... . .+++|+.|++++|.+....
T Consensus 166 L~---L~~N~-------l~~l~---~~~~~L~~L~Ls~N~l~~l~---~---~~~~L~~L~L~~N~l~~l~--------- 217 (622)
T 3g06_A 166 LW---AYNNQ-------LTSLP---MLPSGLQELSVSDNQLASLP---T---LPSELYKLWAYNNRLTSLP--------- 217 (622)
T ss_dssp EE---CCSSC-------CSCCC---CCCTTCCEEECCSSCCSCCC---C---CCTTCCEEECCSSCCSSCC---------
T ss_pred EE---CCCCC-------CCCCc---ccCCCCcEEECCCCCCCCCC---C---ccchhhEEECcCCcccccC---------
Confidence 65 66665 33333 34567777777777766532 1 2356777777777665321
Q ss_pred ccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCC
Q 045877 663 RKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEG 730 (801)
Q Consensus 663 ~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~ 730 (801)
..+++|+.|+|++|.+..+| . .+++|++|+|++|.|++++.
T Consensus 218 ----------------------~~~~~L~~L~Ls~N~L~~lp---~--~l~~L~~L~Ls~N~L~~lp~ 258 (622)
T 3g06_A 218 ----------------------ALPSGLKELIVSGNRLTSLP---V--LPSELKELMVSGNRLTSLPM 258 (622)
T ss_dssp ----------------------CCCTTCCEEECCSSCCSCCC---C--CCTTCCEEECCSSCCSCCCC
T ss_pred ----------------------CCCCCCCEEEccCCccCcCC---C--CCCcCcEEECCCCCCCcCCc
Confidence 11356777777777777666 2 45677777777777766554
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=4.7e-22 Score=213.49 Aligned_cols=249 Identities=12% Similarity=-0.017 Sum_probs=204.1
Q ss_pred hhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccch
Q 045877 417 VEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIEST 496 (801)
Q Consensus 417 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 496 (801)
.-+..+++|++|+|++|+|++..+..|..+++|+.|.+.+|.+....+ |..+++|++|+|++|.+++
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~----------- 94 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE----------- 94 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-----------
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-----------
Confidence 345567799999999999999999999999999999999999987665 9999999999999999842
Q ss_pred hhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCccc-C
Q 045877 497 DYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKL-S 575 (801)
Q Consensus 497 ~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~-~ 575 (801)
+...++|++|++++|.+.+..+. .+++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+ .
T Consensus 95 -----l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 166 (317)
T 3o53_A 95 -----LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166 (317)
T ss_dssp -----EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred -----ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh
Confidence 23458999999999866554433 47899999999998888778889999999999999999988777766 4
Q ss_pred CCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCC
Q 045877 576 LLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKST 655 (801)
Q Consensus 576 ~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 655 (801)
.+++|++|+ +++|. .... .....+++|++|+|++|.+.... ..+..+++|+.|++++|.+.+...
T Consensus 167 ~l~~L~~L~---L~~N~-------l~~~-~~~~~l~~L~~L~Ls~N~l~~l~---~~~~~l~~L~~L~L~~N~l~~l~~- 231 (317)
T 3o53_A 167 SSDTLEHLN---LQYNF-------IYDV-KGQVVFAKLKTLDLSSNKLAFMG---PEFQSAAGVTWISLRNNKLVLIEK- 231 (317)
T ss_dssp GTTTCCEEE---CTTSC-------CCEE-ECCCCCTTCCEEECCSSCCCEEC---GGGGGGTTCSEEECTTSCCCEECT-
T ss_pred ccCcCCEEE---CCCCc-------Cccc-ccccccccCCEEECCCCcCCcch---hhhcccCcccEEECcCCcccchhh-
Confidence 789999999 88887 3333 34456999999999999998764 458899999999999999875321
Q ss_pred CCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCC--CCCcccCCCCCCCccEEEeeCCc-CCCCCC
Q 045877 656 KPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDE--KLPSWVHPYSFKNLKNLYIRGGR-LNSLEG 730 (801)
Q Consensus 656 ~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~--~lp~~l~~~~l~~L~~L~L~~n~-l~~~~~ 730 (801)
.... .++|+.|+|++|.+. .+|.++. .+++|+.|++.+|. +.+..+
T Consensus 232 --------------------------~~~~-l~~L~~L~l~~N~~~~~~~~~~~~--~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 232 --------------------------ALRF-SQNLEHFDLRGNGFHCGTLRDFFS--KNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp --------------------------TCCC-CTTCCEEECTTCCCBHHHHHHHHH--TCHHHHHHHHHHHHHHHSSSS
T ss_pred --------------------------Hhhc-CCCCCEEEccCCCccCcCHHHHHh--ccccceEEECCCchhccCCch
Confidence 1112 369999999999886 6777877 89999999998654 555544
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=4.5e-23 Score=233.39 Aligned_cols=318 Identities=15% Similarity=0.027 Sum_probs=219.0
Q ss_pred hhhhhhccccccccccchhhcchhhhhhc-ccc----CceeeecCCcccCC----CChhhhccCCCCCEEEcCCcccCCC
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAM-KRG----RIETLFNVSEEFPE----FKYDWFSKLEKIKVLYLGRWQSTVD 486 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~----~L~~L~l~~n~i~~----~~~~~f~~l~~L~~L~Ls~n~l~~~ 486 (801)
+..+..+++|++|+|++|+|....+..+. .+. +|++|.+.+|.+.. ..+..|.++++|+.|+|++|.++..
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128 (461)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence 45577789999999999999886665543 344 69999999999885 3478889999999999999988421
Q ss_pred CCCcccccchhhhHhh-cCCcCCceEeecCCCCCcc----CchhhcCCCCCCEEeccCCCCCCCCccccc-----CCCCC
Q 045877 487 DIPHIEIESTDYLKGL-KNMKELRLLSLQGMSGIQE----LPSEISYLTSLEILDLRACYNLDKLPDEIG-----KLKSL 556 (801)
Q Consensus 487 ~~~~~~~~~~~lp~~l-~~l~~L~~L~Ls~n~~~~~----lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~-----~L~~L 556 (801)
. ...+...+ ....+|++|+|++|.+.+. ++..+..+++|++|+|++|.+....+..+. .+++|
T Consensus 129 ~-------~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L 201 (461)
T 1z7x_W 129 G-------LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQL 201 (461)
T ss_dssp H-------HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCC
T ss_pred H-------HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCc
Confidence 1 01222222 3367899999999976653 466778899999999999975443333333 36699
Q ss_pred CEEcccCCccccC----CCcccCCCCcccccccccccCCcchhhhhhcccC-cccccCCccCCeeEeecccccccc--cC
Q 045877 557 THLDISECFLLDG----IPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCS-LKDLEKLEHLRKLTININSEKFQT--EN 629 (801)
Q Consensus 557 ~~L~Ls~n~l~~~----~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~-~~~l~~L~~L~~L~L~~n~~~~~~--~~ 629 (801)
++|++++|.+... ++..+..+++|++|+ +++|....... ..+ ...+..+++|++|++++|.+.... ..
T Consensus 202 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~---Ls~n~l~~~~~--~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 276 (461)
T 1z7x_W 202 EALKLESCGVTSDNCRDLCGIVASKASLRELA---LGSNKLGDVGM--AELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276 (461)
T ss_dssp CEEECTTSCCBTTHHHHHHHHHHHCTTCCEEE---CCSSBCHHHHH--HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred eEEEccCCCCcHHHHHHHHHHHHhCCCccEEe---ccCCcCChHHH--HHHHHHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence 9999999998763 577788899999999 88877211000 001 122346889999999999887642 11
Q ss_pred hhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCC-----CC
Q 045877 630 LSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEK-----LP 704 (801)
Q Consensus 630 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~-----lp 704 (801)
+..+..+++|++|++++|.+.+... .. +........++|+.|+|++|.++. ++
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~---------------~~-------l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGA---------------RL-------LCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHH---------------HH-------HHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred HHHHhhCCCcceEECCCCCCchHHH---------------HH-------HHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 4567789999999999997753211 10 111111223689999999998764 34
Q ss_pred cccCCCCCCCccEEEeeCCcCCCCCCCcccccceeccccccccccccccccC-----------cCCCCceeeccCC
Q 045877 705 SWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQE-----------LFPKLEYLEKFKC 769 (801)
Q Consensus 705 ~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~~-----------~~p~L~~L~l~~c 769 (801)
.++. .+++|++|+|++|.+++.....+...-.-...+|+.|++++|.+++ .+++|++|++.+|
T Consensus 335 ~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 335 SVLA--QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHH--HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HHHh--hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 5555 7899999999999887654322210000014577778888887762 2466666666665
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=8.2e-20 Score=212.21 Aligned_cols=255 Identities=23% Similarity=0.108 Sum_probs=140.7
Q ss_pred cCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhh
Q 045877 447 GRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526 (801)
Q Consensus 447 ~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i 526 (801)
.+++.|.+.+|.+..++...+ ++|++|+|++|.++. +|. .+++|++|+|++|. +..+|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~------------lp~---~l~~L~~L~Ls~N~-l~~lp~-- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTS------------LPA---LPPELRTLEVSGNQ-LTSLPV-- 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSC------------CCC---CCTTCCEEEECSCC-CSCCCC--
T ss_pred CCCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCC------------CCC---cCCCCCEEEcCCCc-CCcCCC--
Confidence 346666666666665544332 566666666666632 222 35666666666664 334554
Q ss_pred cCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCccc
Q 045877 527 SYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKD 606 (801)
Q Consensus 527 ~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~ 606 (801)
.+++|++|+|++|.+. .+|. .+++|++|++++|++.. +|.. +++|++|+ +++|. ...++.
T Consensus 99 -~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~---Ls~N~-------l~~l~~- 158 (622)
T 3g06_A 99 -LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELS---VSDNQ-------LASLPA- 158 (622)
T ss_dssp -CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEE---CCSSC-------CSCCCC-
T ss_pred -CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEE---CcCCc-------CCCcCC-
Confidence 5566666666666433 3443 45566666666666543 4442 35566666 55555 222222
Q ss_pred ccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhccccccccccccc
Q 045877 607 LEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHV 686 (801)
Q Consensus 607 l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~ 686 (801)
.+.+|+.|++++|.+.... ..+++|+.|++++|.+.+... .
T Consensus 159 --~~~~L~~L~L~~N~l~~l~------~~~~~L~~L~Ls~N~l~~l~~-------------------------------~ 199 (622)
T 3g06_A 159 --LPSELCKLWAYNNQLTSLP------MLPSGLQELSVSDNQLASLPT-------------------------------L 199 (622)
T ss_dssp --CCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCSCCCC-------------------------------C
T ss_pred --ccCCCCEEECCCCCCCCCc------ccCCCCcEEECCCCCCCCCCC-------------------------------c
Confidence 2345666666666665432 334566666666666554211 1
Q ss_pred CCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccccc---CcCCCCce
Q 045877 687 ESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ---ELFPKLEY 763 (801)
Q Consensus 687 ~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~---~~~p~L~~ 763 (801)
+++|+.|++++|.+..+|. .+++|++|+|++|.|++++ .. +.+|+.|++++|.++ ..+++|+.
T Consensus 200 ~~~L~~L~L~~N~l~~l~~-----~~~~L~~L~Ls~N~L~~lp-~~--------l~~L~~L~Ls~N~L~~lp~~~~~L~~ 265 (622)
T 3g06_A 200 PSELYKLWAYNNRLTSLPA-----LPSGLKELIVSGNRLTSLP-VL--------PSELKELMVSGNRLTSLPMLPSGLLS 265 (622)
T ss_dssp CTTCCEEECCSSCCSSCCC-----CCTTCCEEECCSSCCSCCC-CC--------CTTCCEEECCSSCCSCCCCCCTTCCE
T ss_pred cchhhEEECcCCcccccCC-----CCCCCCEEEccCCccCcCC-CC--------CCcCcEEECCCCCCCcCCcccccCcE
Confidence 2466666666666665553 2356666666666666654 22 234444444555443 23455666
Q ss_pred eeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 764 LEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 764 L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
|++.+| +++.+|. .+.++++|+.|||++|++.
T Consensus 266 L~Ls~N-~L~~lp~---~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 266 LSVYRN-QLTRLPE---SLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp EECCSS-CCCSCCG---GGGGSCTTCEEECCSCCCC
T ss_pred EeCCCC-CCCcCCH---HHhhccccCEEEecCCCCC
Confidence 666665 5555543 4566666666666666653
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=1e-19 Score=191.13 Aligned_cols=209 Identities=15% Similarity=0.072 Sum_probs=157.8
Q ss_pred CCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccc
Q 045877 471 EKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEI 550 (801)
Q Consensus 471 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~ 550 (801)
++|++|+|++|.++.. .+..|.++++|++|+|++|.+.+..+..+.++++|++|+|++|.+.+..+..|
T Consensus 28 ~~l~~L~ls~n~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHL-----------GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (276)
T ss_dssp TTCCEEECTTCCCCEE-----------CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred CCccEEECCCCccccc-----------CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence 4688888888877432 13367778888888888876655555678888888888888887776666778
Q ss_pred cCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccCh
Q 045877 551 GKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENL 630 (801)
Q Consensus 551 ~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~ 630 (801)
.++++|++|++++|.+.+..+..++.+++|++|+ +++|. +.....+..+..+++|++|++++|.+.... .
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~---l~~n~-----l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~--~ 166 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELN---VAHNL-----IQSFKLPEYFSNLTNLEHLDLSSNKIQSIY--C 166 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE---CCSSC-----CCCCCCCGGGGGCTTCCEEECCSSCCCEEC--G
T ss_pred cCCccccEEECCCCCccccCchhcccCCCCCEEE---CcCCc-----cceecCchhhccCCCCCEEECCCCCCCcCC--H
Confidence 8888888888888887766666788888888888 77776 112225678889999999999999988765 5
Q ss_pred hhhhcccCCc----EEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcc
Q 045877 631 STVLAFKRLL----QLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSW 706 (801)
Q Consensus 631 ~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~ 706 (801)
..+..+.+|+ .|++++|.+.+..+..+ . ..+|+.|+|++|.+..+|..
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~---------------------------~-~~~L~~L~L~~n~l~~~~~~ 218 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF---------------------------K-EIRLKELALDTNQLKSVPDG 218 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSS---------------------------C-SCCEEEEECCSSCCSCCCTT
T ss_pred HHhhhhhhccccceeeecCCCcccccCcccc---------------------------C-CCcccEEECCCCceeecCHh
Confidence 5666666666 89999998876443211 1 14799999999999999887
Q ss_pred cCCCCCCCccEEEeeCCcCCCCC
Q 045877 707 VHPYSFKNLKNLYIRGGRLNSLE 729 (801)
Q Consensus 707 l~~~~l~~L~~L~L~~n~l~~~~ 729 (801)
++ ..+++|++|+|++|.+....
T Consensus 219 ~~-~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 219 IF-DRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp TT-TTCCSCCEEECCSSCBCCCT
T ss_pred Hh-cccccccEEEccCCcccccC
Confidence 64 58999999999999988654
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=1.6e-20 Score=197.26 Aligned_cols=211 Identities=16% Similarity=0.095 Sum_probs=179.1
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
++|++|+|++|+|+++.+..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|.++.. .+..|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------~~~~~ 96 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-----------ALGAF 96 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-----------CTTTT
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc-----------Chhhh
Confidence 4789999999999999999999999999999999999999999999999999999999998532 24678
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCC-CCcccccCCCCCCEEcccCCccccCCCcccCCCCccc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLD-KLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQ 581 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~-~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ 581 (801)
.++++|++|++++|.+.+..+..++.+++|++|+|++|.+.+ .+|..+..+++|++|++++|.+.+..+..+..+.+|+
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence 999999999999997766656679999999999999997766 4699999999999999999999887777788888887
Q ss_pred ccc-cccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCC
Q 045877 582 VLK-GFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANK 653 (801)
Q Consensus 582 ~L~-~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 653 (801)
.|. ...+++|. ....+.......+|+.|++++|.+.... ...+..+++|+.|++++|.+.+..
T Consensus 177 ~l~l~L~ls~n~-------l~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 177 LLNLSLDLSLNP-------MNFIQPGAFKEIRLKELALDTNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp TCCEEEECCSSC-------CCEECTTSSCSCCEEEEECCSSCCSCCC--TTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ccceeeecCCCc-------ccccCccccCCCcccEEECCCCceeecC--HhHhcccccccEEEccCCcccccC
Confidence 433 12278887 4445555555668999999999998765 566789999999999999998653
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=3.6e-21 Score=218.88 Aligned_cols=214 Identities=15% Similarity=0.081 Sum_probs=108.9
Q ss_pred CceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhc
Q 045877 448 RIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEIS 527 (801)
Q Consensus 448 ~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~ 527 (801)
+|+.|.+.+|.+..+++..|.++++|++|+|++|.+++ .+. +..+++|++|+|++|.+ ..+|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------------~~~-l~~l~~L~~L~Ls~N~l-~~l~---- 96 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE------------TLD-LESLSTLRTLDLNNNYV-QELL---- 96 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE------------EEE-CTTCTTCCEEECCSSEE-EEEE----
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC------------Ccc-cccCCCCCEEEecCCcC-CCCC----
Confidence 45555555555555555555555555555555555521 111 45555555555555432 2222
Q ss_pred CCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhccc-Cccc
Q 045877 528 YLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWC-SLKD 606 (801)
Q Consensus 528 ~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~-~~~~ 606 (801)
..++|++|+|++|.+.+..+. .+++|++|++++|.+.+..|..++.+++|++|+ +++|. ... .+..
T Consensus 97 ~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~---Ls~N~-------l~~~~~~~ 163 (487)
T 3oja_A 97 VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD---LKLNE-------IDTVNFAE 163 (487)
T ss_dssp ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEE---CTTSC-------CCEEEGGG
T ss_pred CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEE---CCCCC-------CCCcChHH
Confidence 125555555555544433222 234555555555555555555555555555555 55544 111 2233
Q ss_pred cc-CCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccc
Q 045877 607 LE-KLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQH 685 (801)
Q Consensus 607 l~-~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~ 685 (801)
+. .+++|+.|+|++|.+.+.. .+..+++|+.|+|++|.+++..+ . ...
T Consensus 164 l~~~l~~L~~L~Ls~N~l~~~~----~~~~l~~L~~L~Ls~N~l~~~~~--------------------------~-~~~ 212 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIYDVK----GQVVFAKLKTLDLSSNKLAFMGP--------------------------E-FQS 212 (487)
T ss_dssp GGGGTTTCCEEECTTSCCCEEE----CCCCCTTCCEEECCSSCCCEECG--------------------------G-GGG
T ss_pred HhhhCCcccEEecCCCcccccc----ccccCCCCCEEECCCCCCCCCCH--------------------------h-HcC
Confidence 33 4566666666666655432 12245666666666666554321 0 111
Q ss_pred cCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCC
Q 045877 686 VESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLN 726 (801)
Q Consensus 686 ~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~ 726 (801)
.++|+.|+|++|.+..+|.++. .+++|+.|+|++|.+.
T Consensus 213 -l~~L~~L~Ls~N~l~~lp~~l~--~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 213 -AAGVTWISLRNNKLVLIEKALR--FSQNLEHFDLRGNGFH 250 (487)
T ss_dssp -GTTCSEEECTTSCCCEECTTCC--CCTTCCEEECTTCCBC
T ss_pred -CCCccEEEecCCcCcccchhhc--cCCCCCEEEcCCCCCc
Confidence 2466666666666666666654 6666666666666655
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=4e-19 Score=185.98 Aligned_cols=203 Identities=17% Similarity=0.109 Sum_probs=168.1
Q ss_pred ccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhc
Q 045877 424 KLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLK 503 (801)
Q Consensus 424 ~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~ 503 (801)
.++.+++++|+++.++... ...++.|.+.+|.+..+++..|.++++|++|+|++|.++... +..|.
T Consensus 17 ~~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~-----------~~~~~ 82 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP-----------AGIFK 82 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC-----------TTTTS
T ss_pred CCCEEEccCCCCCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC-----------hhhhc
Confidence 4567899999998754433 257899999999999998889999999999999999985321 34468
Q ss_pred CCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCccccc
Q 045877 504 NMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583 (801)
Q Consensus 504 ~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L 583 (801)
.+++|++|+|++|.+.+..+..+.++++|++|+|++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence 89999999999987665555677899999999999998887777788999999999999999886666668999999999
Q ss_pred ccccccCCcchhhhhhcccCc-ccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCC
Q 045877 584 KGFVISDHAEDDRRWKRWCSL-KDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSAN 652 (801)
Q Consensus 584 ~~~~l~~n~~~~~~~~~~~~~-~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 652 (801)
+ +++|. ....+ ..|..+++|++|+|++|.+.... ...+..+++|+.|+|++|.+...
T Consensus 163 ~---L~~n~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 163 R---LYNNQ-------LKRVPEGAFDKLTELKTLKLDNNQLKRVP--EGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp E---CCSSC-------CSCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCBCCS
T ss_pred E---ecCCc-------CcEeChhHhccCCCcCEEECCCCcCCcCC--HHHhccccCCCEEEecCCCeeCC
Confidence 9 88887 44444 35889999999999999988765 56688899999999999987654
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=1e-19 Score=206.78 Aligned_cols=236 Identities=12% Similarity=-0.013 Sum_probs=193.6
Q ss_pred hccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhH
Q 045877 421 KIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLK 500 (801)
Q Consensus 421 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~ 500 (801)
..++|+.|+|++|.|++..+..|..+++|++|.+.+|.+....+ |..+++|++|+|++|.+++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~--------------- 94 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE--------------- 94 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE---------------
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC---------------
Confidence 34489999999999999999999999999999999999987665 8999999999999998842
Q ss_pred hhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccC-CCCc
Q 045877 501 GLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLS-LLSK 579 (801)
Q Consensus 501 ~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~-~L~~ 579 (801)
+...++|++|+|++|.+.+..+. .+++|++|+|++|.+.+..|..++.+++|++|+|++|.+.+..|..+. .+++
T Consensus 95 -l~~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 95 -LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (487)
T ss_dssp -EEECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred -CCCCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence 22348999999999876655443 468899999999988888888899999999999999999988888776 7899
Q ss_pred ccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCC
Q 045877 580 LQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEP 659 (801)
Q Consensus 580 L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 659 (801)
|++|+ +++|. .... ..+..+++|+.|+|++|.+.+.. ..+..+++|+.|+|++|.+.+...
T Consensus 171 L~~L~---Ls~N~-------l~~~-~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~l~~L~~L~Ls~N~l~~lp~----- 231 (487)
T 3oja_A 171 LEHLN---LQYNF-------IYDV-KGQVVFAKLKTLDLSSNKLAFMG---PEFQSAAGVTWISLRNNKLVLIEK----- 231 (487)
T ss_dssp CCEEE---CTTSC-------CCEE-ECCCCCTTCCEEECCSSCCCEEC---GGGGGGTTCSEEECTTSCCCEECT-----
T ss_pred ccEEe---cCCCc-------cccc-cccccCCCCCEEECCCCCCCCCC---HhHcCCCCccEEEecCCcCcccch-----
Confidence 99999 88887 3333 34556999999999999998764 458899999999999998875321
Q ss_pred CCCccchhchhhhhcccccccccccccCCCccEEEccCCCCC--CCCcccCCCCCCCccEEEee
Q 045877 660 QTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDE--KLPSWVHPYSFKNLKNLYIR 721 (801)
Q Consensus 660 ~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~--~lp~~l~~~~l~~L~~L~L~ 721 (801)
.... .++|+.|+|++|.+. .+|.++. .++.|+.|++.
T Consensus 232 ----------------------~l~~-l~~L~~L~l~~N~l~c~~~~~~~~--~l~~L~~l~~~ 270 (487)
T 3oja_A 232 ----------------------ALRF-SQNLEHFDLRGNGFHCGTLRDFFS--KNQRVQTVAKQ 270 (487)
T ss_dssp ----------------------TCCC-CTTCCEEECTTCCBCHHHHHHHHT--TCHHHHHHHHH
T ss_pred ----------------------hhcc-CCCCCEEEcCCCCCcCcchHHHHH--hCCCCcEEecc
Confidence 1112 368999999999876 6777777 88888888886
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=4e-19 Score=187.91 Aligned_cols=203 Identities=17% Similarity=0.063 Sum_probs=174.5
Q ss_pred hhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhh
Q 045877 419 FEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDY 498 (801)
Q Consensus 419 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 498 (801)
+.++++++.+++++|+|+.+++..+ ..++.|.+.+|.+..+.+..|.++++|+.|+|++|.++. +
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------~ 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK------------L 70 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE------------E
T ss_pred ccccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc------------c
Confidence 5678889999999999998765543 588999999999999999999999999999999999853 2
Q ss_pred hHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCC
Q 045877 499 LKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLS 578 (801)
Q Consensus 499 p~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~ 578 (801)
+. ...+++|++|+|++|. +..+|..+..+++|++|+|++|++.+..+..|..+++|++|+|++|++.+..+..|..++
T Consensus 71 ~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 148 (290)
T 1p9a_G 71 QV-DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148 (290)
T ss_dssp EC-CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cC-CCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccccc
Confidence 22 3789999999999984 568898899999999999999988777778899999999999999999877677789999
Q ss_pred cccccccccccCCcchhhhhhcccCcc-cccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCC
Q 045877 579 KLQVLKGFVISDHAEDDRRWKRWCSLK-DLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSA 651 (801)
Q Consensus 579 ~L~~L~~~~l~~n~~~~~~~~~~~~~~-~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 651 (801)
+|+.|+ +++|. ...++. .|..+++|+.|+|++|.+... +..+..+.+|+.|+|++|.+..
T Consensus 149 ~L~~L~---L~~N~-------l~~l~~~~~~~l~~L~~L~L~~N~l~~i---p~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 149 KLEKLS---LANNN-------LTELPAGLLNGLENLDTLLLQENSLYTI---PKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TCCEEE---CTTSC-------CSCCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCCCSEEECCSCCBCC
T ss_pred CCCEEE---CCCCc-------CCccCHHHhcCcCCCCEEECCCCcCCcc---ChhhcccccCCeEEeCCCCccC
Confidence 999999 88888 455554 568899999999999999855 5667778899999999998763
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=1.5e-18 Score=183.57 Aligned_cols=204 Identities=19% Similarity=0.092 Sum_probs=136.9
Q ss_pred hccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCC
Q 045877 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKL 546 (801)
Q Consensus 467 f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~l 546 (801)
+.++++|+.++++++.++ .+|..+. ++|++|+|++|.+.+..+..|..+++|++|+|++|.+.+ +
T Consensus 6 ~~~l~~l~~l~~~~~~l~------------~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~ 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT------------ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-L 70 (290)
T ss_dssp EECSTTCCEEECTTSCCS------------SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-E
T ss_pred ccccCCccEEECCCCCCC------------cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-c
Confidence 455666666666666663 2233222 466666666665555555666666777777776664433 3
Q ss_pred cccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCc-ccccCCccCCeeEeecccccc
Q 045877 547 PDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSL-KDLEKLEHLRKLTININSEKF 625 (801)
Q Consensus 547 p~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~-~~l~~L~~L~~L~L~~n~~~~ 625 (801)
+.. +.+++|++|++++|.+. .+|..+..+++|++|+ +++|. ....+ ..|..+++|++|+|++|++..
T Consensus 71 ~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~---l~~N~-------l~~l~~~~~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 71 QVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD---VSFNR-------LTSLPLGALRGLGELQELYLKGNELKT 138 (290)
T ss_dssp ECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE---CCSSC-------CCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred cCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE---CCCCc-------CcccCHHHHcCCCCCCEEECCCCCCCc
Confidence 322 56666777777777654 5566666666676666 66665 33333 457778888888888888776
Q ss_pred cccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCc
Q 045877 626 QTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPS 705 (801)
Q Consensus 626 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~ 705 (801)
.. +..|..+++|+.|+|++|.+.+.....+ .. .++|+.|+|++|.+..+|.
T Consensus 139 ~~--~~~~~~l~~L~~L~L~~N~l~~l~~~~~--------------------------~~-l~~L~~L~L~~N~l~~ip~ 189 (290)
T 1p9a_G 139 LP--PGLLTPTPKLEKLSLANNNLTELPAGLL--------------------------NG-LENLDTLLLQENSLYTIPK 189 (290)
T ss_dssp CC--TTTTTTCTTCCEEECTTSCCSCCCTTTT--------------------------TT-CTTCCEEECCSSCCCCCCT
T ss_pred cC--hhhcccccCCCEEECCCCcCCccCHHHh--------------------------cC-cCCCCEEECCCCcCCccCh
Confidence 65 5667788888899998888875543211 11 3689999999999999999
Q ss_pred ccCCCCCCCccEEEeeCCcCCCC
Q 045877 706 WVHPYSFKNLKNLYIRGGRLNSL 728 (801)
Q Consensus 706 ~l~~~~l~~L~~L~L~~n~l~~~ 728 (801)
.++ .+.+|+.|+|++|.+...
T Consensus 190 ~~~--~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 190 GFF--GSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TTT--TTCCCSEEECCSCCBCCS
T ss_pred hhc--ccccCCeEEeCCCCccCc
Confidence 887 788999999999987643
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=4.1e-18 Score=178.26 Aligned_cols=184 Identities=16% Similarity=0.085 Sum_probs=117.0
Q ss_pred cCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCccccccc
Q 045877 506 KELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKG 585 (801)
Q Consensus 506 ~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~ 585 (801)
.+|++|+|++|.+.+..+..|+++++|++|+|++|.+....+..|.++++|++|++++|.+.+..+..|..+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~- 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR- 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE-
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE-
Confidence 3566666666544433334566666666666666644433333445566666666666665544444556666666666
Q ss_pred ccccCCcchhhhhhcccCc-ccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCcc
Q 045877 586 FVISDHAEDDRRWKRWCSL-KDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRK 664 (801)
Q Consensus 586 ~~l~~n~~~~~~~~~~~~~-~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 664 (801)
+++|. ....+ ..|..+++|++|+|++|.+.... ...|..+++|+.|+|++|.+.+..+..+
T Consensus 116 --l~~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~------- 177 (270)
T 2o6q_A 116 --LDRNQ-------LKSLPPRVFDSLTKLTYLSLGYNELQSLP--KGVFDKLTSLKELRLYNNQLKRVPEGAF------- 177 (270)
T ss_dssp --CCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCSCCCTTTT-------
T ss_pred --CCCCc-------cCeeCHHHhCcCcCCCEEECCCCcCCccC--HhHccCCcccceeEecCCcCcEeChhHh-------
Confidence 55554 22222 34667777888888888777654 4557778888888888887776443211
Q ss_pred chhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCC
Q 045877 665 DNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLE 729 (801)
Q Consensus 665 ~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~ 729 (801)
.. .++|+.|+|++|.+..+|...+ ..+++|+.|+|++|.+....
T Consensus 178 -------------------~~-l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 178 -------------------DK-LTELKTLKLDNNQLKRVPEGAF-DSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp -------------------TT-CTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCBCCSS
T ss_pred -------------------cc-CCCcCEEECCCCcCCcCCHHHh-ccccCCCEEEecCCCeeCCC
Confidence 11 2678888888888888877543 47889999999999876554
No 76
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=5.6e-20 Score=214.78 Aligned_cols=210 Identities=12% Similarity=0.078 Sum_probs=150.9
Q ss_pred hhhccccccccccchhhcch----hhhhhccccCceeeecCCcccCCCC----hhhhccCCCCCEEEcCCcccCCCCCCc
Q 045877 419 FEKIKKLFNFSLSLEEIENK----AKDCAMKRGRIETLFNVSEEFPEFK----YDWFSKLEKIKVLYLGRWQSTVDDIPH 490 (801)
Q Consensus 419 ~~~l~~L~~L~Ls~N~l~~~----~~~~~~~~~~L~~L~l~~n~i~~~~----~~~f~~l~~L~~L~Ls~n~l~~~~~~~ 490 (801)
+..+++|++|+|++|.+++. ++..+..+++|+.|.+..|.+..+. +..+.++++|++|+|++|.+
T Consensus 160 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~------- 232 (592)
T 3ogk_B 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI------- 232 (592)
T ss_dssp HHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-------
T ss_pred HhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-------
Confidence 34778999999999988766 5556667889999999988887443 34557889999999999887
Q ss_pred ccccchhhhHhhcCCcCCceEeecCCCCC---ccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccc
Q 045877 491 IEIESTDYLKGLKNMKELRLLSLQGMSGI---QELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLL 567 (801)
Q Consensus 491 ~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~---~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~ 567 (801)
..++..+..+++|++|+++++... ...+..+..+++|+.|+++++ ....+|..+..+++|++|++++|.+.
T Consensus 233 -----~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~ 306 (592)
T 3ogk_B 233 -----LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLE 306 (592)
T ss_dssp -----GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCC
T ss_pred -----HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCC
Confidence 356778888999999999864322 334456778889999999885 56677888888999999999999865
Q ss_pred cCCC-cccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeec-----------ccccccccChhhhhc
Q 045877 568 DGIP-KKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTINI-----------NSEKFQTENLSTVLA 635 (801)
Q Consensus 568 ~~~p-~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~-----------n~~~~~~~~~~~l~~ 635 (801)
.... ..+..+++|++|+ +.++. ........+..+++|++|+|++ +.++... ....+..
T Consensus 307 ~~~~~~~~~~~~~L~~L~---L~~~~------~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~-~~~l~~~ 376 (592)
T 3ogk_B 307 TEDHCTLIQKCPNLEVLE---TRNVI------GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG-LIALAQG 376 (592)
T ss_dssp HHHHHHHHTTCTTCCEEE---EEGGG------HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH-HHHHHHH
T ss_pred HHHHHHHHHhCcCCCEEe---ccCcc------CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH-HHHHHhh
Confidence 4332 3467888899888 55332 1122233446678899999983 4444322 1233456
Q ss_pred ccCCcEEEeeccCCCC
Q 045877 636 FKRLLQLKVSWGGGSA 651 (801)
Q Consensus 636 l~~L~~L~L~~n~l~~ 651 (801)
+++|++|+++.|.+++
T Consensus 377 ~~~L~~L~l~~~~l~~ 392 (592)
T 3ogk_B 377 CQELEYMAVYVSDITN 392 (592)
T ss_dssp CTTCSEEEEEESCCCH
T ss_pred CccCeEEEeecCCccH
Confidence 8889999998777654
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=2.5e-18 Score=180.12 Aligned_cols=202 Identities=17% Similarity=0.109 Sum_probs=154.2
Q ss_pred ccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHh
Q 045877 422 IKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKG 501 (801)
Q Consensus 422 l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~ 501 (801)
++.+..+++..+.+..... ...+.+|+.|.+.++.+..+. .+..+++|++|+|++|.+++ + ..
T Consensus 18 ~~~l~~l~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~------------~-~~ 80 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHD------------I-SA 80 (272)
T ss_dssp HHHHHHHHHTCSCTTSEEC--HHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCC------------C-GG
T ss_pred HHHHHHHHhcCcccccccc--cccccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCC------------c-hh
Confidence 3444455566665554432 335677888888888777653 47888999999999998843 2 36
Q ss_pred hcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCccc
Q 045877 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQ 581 (801)
Q Consensus 502 l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ 581 (801)
+..+++|++|+|++|.+.+..+..++++++|++|+|++|.+.+..+..++.+++|++|++++|.+.+..+..++.+++|+
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 160 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT 160 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCC
Confidence 78889999999999876665566678899999999999877776666788899999999999988876666678889999
Q ss_pred ccccccccCCcchhhhhhcccCc-ccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCC
Q 045877 582 VLKGFVISDHAEDDRRWKRWCSL-KDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSAN 652 (801)
Q Consensus 582 ~L~~~~l~~n~~~~~~~~~~~~~-~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 652 (801)
+|+ +++|. ....+ ..++.+++|+.|++++|.+.+.. +..+..+++|+.|++++|.+.+.
T Consensus 161 ~L~---l~~n~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 161 ELD---LSYNQ-------LQSLPEGVFDKLTQLKDLRLYQNQLKSVP--DGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp EEE---CCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCBCCC
T ss_pred EEE---CCCCC-------cCccCHHHhcCCccCCEEECCCCcCCccC--HHHHhCCcCCCEEEccCCCcccc
Confidence 988 88877 33343 34688899999999999888765 56678899999999999887653
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=9.5e-19 Score=187.01 Aligned_cols=233 Identities=17% Similarity=0.100 Sum_probs=160.1
Q ss_pred CCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhh--cCCCCCCEEeccCCCCCCCCc--
Q 045877 472 KIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI--SYLTSLEILDLRACYNLDKLP-- 547 (801)
Q Consensus 472 ~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i--~~L~~L~~L~Ls~n~~~~~lp-- 547 (801)
.++.|.+.++.++... ...+.. +..+.+|++|+|++|.+.+..|..+ +.+++|++|+|++|.+.+..+
T Consensus 65 ~l~~l~l~~~~~~~~~-------~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 136 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQL-------LVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL 136 (310)
T ss_dssp CCCEEEECSCCCBHHH-------HHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH
T ss_pred ceeEEEEeCCcCCHHH-------HHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh
Confidence 4677777777663210 011111 2234668888888887777777777 788888888888887766554
Q ss_pred --ccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhc---ccCcccccCCccCCeeEeeccc
Q 045877 548 --DEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKR---WCSLKDLEKLEHLRKLTININS 622 (801)
Q Consensus 548 --~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~---~~~~~~l~~L~~L~~L~L~~n~ 622 (801)
..+..+++|++|++++|.+.+..+..|+.+++|++|+ +++|. +.. ......++.+++|++|+|++|.
T Consensus 137 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~---Ls~N~-----l~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 137 AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLD---LSDNP-----GLGERGLMAALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEE---CCSCT-----TCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEE---CCCCC-----CccchhhhHHHhhhcCCCCCEEECCCCC
Confidence 3455788888888888888777777888888888888 77776 111 0112234678889999999998
Q ss_pred ccccccChh-hhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCC
Q 045877 623 EKFQTENLS-TVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDE 701 (801)
Q Consensus 623 ~~~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~ 701 (801)
+........ .+..+++|++|+|++|.+.+..+..+ ... ..+++|+.|+|++|.+.
T Consensus 209 l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~----------------------~~~--~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 209 METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA----------------------PRC--MWSSALNSLNLSFAGLE 264 (310)
T ss_dssp CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC----------------------SSC--CCCTTCCCEECCSSCCC
T ss_pred CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH----------------------Hhc--cCcCcCCEEECCCCCCC
Confidence 864331122 35778899999999998887644322 011 11368899999998888
Q ss_pred CCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccccc
Q 045877 702 KLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ 755 (801)
Q Consensus 702 ~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~ 755 (801)
.+|..+. ++|++|+|++|+|++++. + ..+++|+.|++++|.++
T Consensus 265 ~lp~~~~----~~L~~L~Ls~N~l~~~~~--~-----~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 265 QVPKGLP----AKLRVLDLSSNRLNRAPQ--P-----DELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SCCSCCC----SCCSCEECCSCCCCSCCC--T-----TSCCCCSCEECSSTTTS
T ss_pred chhhhhc----CCCCEEECCCCcCCCCch--h-----hhCCCccEEECcCCCCC
Confidence 8888754 788999999999887743 2 23567777777777764
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=3.4e-18 Score=182.45 Aligned_cols=199 Identities=16% Similarity=0.149 Sum_probs=168.5
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...+.++++|+.|++++|++.... .+..+++|+.|.+.+|.+..+.+ |.++++|++|+|++|.++.
T Consensus 34 ~~~~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~---------- 99 (308)
T 1h6u_A 34 TVTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN---------- 99 (308)
T ss_dssp EECHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC----------
T ss_pred eecHHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC----------
Confidence 356778999999999999998864 57789999999999999998876 9999999999999999853
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccC
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLS 575 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~ 575 (801)
+ ..+..+++|++|+|++|.+ ..++. +..+++|++|+|++|.+.+ ++. ++.+++|++|++++|.+.+ ++. +.
T Consensus 100 --~-~~~~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~ 170 (308)
T 1h6u_A 100 --V-SAIAGLQSIKTLDLTSTQI-TDVTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTP-LA 170 (308)
T ss_dssp --C-GGGTTCTTCCEEECTTSCC-CCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-GT
T ss_pred --c-hhhcCCCCCCEEECCCCCC-CCchh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC-Chh-hc
Confidence 2 3688999999999999865 44654 9999999999999996655 444 8899999999999999875 443 89
Q ss_pred CCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCC
Q 045877 576 LLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSAN 652 (801)
Q Consensus 576 ~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 652 (801)
.+++|+.|+ +++|. ....+ .+..+++|++|++++|.+.... .+..+++|+.|++++|.+++.
T Consensus 171 ~l~~L~~L~---l~~n~-------l~~~~-~l~~l~~L~~L~L~~N~l~~~~----~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 171 NLSKLTTLK---ADDNK-------ISDIS-PLASLPNLIEVHLKNNQISDVS----PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp TCTTCCEEE---CCSSC-------CCCCG-GGGGCTTCCEEECTTSCCCBCG----GGTTCTTCCEEEEEEEEEECC
T ss_pred CCCCCCEEE---CCCCc-------cCcCh-hhcCCCCCCEEEccCCccCccc----cccCCCCCCEEEccCCeeecC
Confidence 999999999 88887 33333 4889999999999999988654 488999999999999998754
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=185.95 Aligned_cols=202 Identities=16% Similarity=0.106 Sum_probs=140.6
Q ss_pred CCCCCEEEcCCcccCCCCCCcccccchhhhHhh--cCCcCCceEeecCCCCCccCc----hhhcCCCCCCEEeccCCCCC
Q 045877 470 LEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL--KNMKELRLLSLQGMSGIQELP----SEISYLTSLEILDLRACYNL 543 (801)
Q Consensus 470 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l--~~l~~L~~L~Ls~n~~~~~lp----~~i~~L~~L~~L~Ls~n~~~ 543 (801)
+++|+.|+|++|.+++ ..|..+ ..+++|++|+|++|.+.+..+ ..+..+++|++|+|++|.+.
T Consensus 90 ~~~L~~L~l~~n~l~~-----------~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 158 (310)
T 4glp_A 90 YSRLKELTLEDLKITG-----------TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP 158 (310)
T ss_dssp HSCCCEEEEESCCCBS-----------CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC
T ss_pred cCceeEEEeeCCEecc-----------chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc
Confidence 3457777777777643 223444 667777777777776555433 34456777777777777776
Q ss_pred CCCcccccCCCCCCEEcccCCccccC--C--CcccCCCCcccccccccccCCcchhhhhhcccCcc----cccCCccCCe
Q 045877 544 DKLPDEIGKLKSLTHLDISECFLLDG--I--PKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLK----DLEKLEHLRK 615 (801)
Q Consensus 544 ~~lp~~~~~L~~L~~L~Ls~n~l~~~--~--p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~----~l~~L~~L~~ 615 (801)
+..+..++.+++|++|+|++|++.+. + +..++.+++|++|+ +++|. ....+. .++.+++|++
T Consensus 159 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~---Ls~N~-------l~~l~~~~~~l~~~l~~L~~ 228 (310)
T 4glp_A 159 AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLA---LRNTG-------METPTGVCAALAAAGVQPHS 228 (310)
T ss_dssp CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCB---CCSSC-------CCCHHHHHHHHHHHTCCCSS
T ss_pred hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEE---CCCCC-------CCchHHHHHHHHhcCCCCCE
Confidence 66667777777777777777776542 2 22246677777777 77776 222222 2467899999
Q ss_pred eEeecccccccccChhhhhcc---cCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccE
Q 045877 616 LTININSEKFQTENLSTVLAF---KRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEK 692 (801)
Q Consensus 616 L~L~~n~~~~~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~ 692 (801)
|+|++|.+.... +..+..+ ++|++|+|++|.+..... .++++|+.
T Consensus 229 L~Ls~N~l~~~~--p~~~~~~~~~~~L~~L~Ls~N~l~~lp~------------------------------~~~~~L~~ 276 (310)
T 4glp_A 229 LDLSHNSLRATV--NPSAPRCMWSSALNSLNLSFAGLEQVPK------------------------------GLPAKLRV 276 (310)
T ss_dssp EECTTSCCCCCC--CSCCSSCCCCTTCCCEECCSSCCCSCCS------------------------------CCCSCCSC
T ss_pred EECCCCCCCccc--hhhHHhccCcCcCCEEECCCCCCCchhh------------------------------hhcCCCCE
Confidence 999999988764 3444444 799999999999884321 11368999
Q ss_pred EEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCC
Q 045877 693 LDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNS 727 (801)
Q Consensus 693 L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~ 727 (801)
|+|++|.+..+|. +. .+++|+.|+|++|.|+.
T Consensus 277 L~Ls~N~l~~~~~-~~--~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 277 LDLSSNRLNRAPQ-PD--ELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp EECCSCCCCSCCC-TT--SCCCCSCEECSSTTTSC
T ss_pred EECCCCcCCCCch-hh--hCCCccEEECcCCCCCC
Confidence 9999999998876 34 89999999999999865
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=6.3e-20 Score=202.59 Aligned_cols=255 Identities=15% Similarity=0.074 Sum_probs=147.2
Q ss_pred ccCceeeecCCcccCCCCh----hhhccCCCCCEEEcCCcccCCCC--CCcccccchhhhHhhcCCcCCceEeecCCCCC
Q 045877 446 RGRIETLFNVSEEFPEFKY----DWFSKLEKIKVLYLGRWQSTVDD--IPHIEIESTDYLKGLKNMKELRLLSLQGMSGI 519 (801)
Q Consensus 446 ~~~L~~L~l~~n~i~~~~~----~~f~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~ 519 (801)
+++|+.|.+.+|.+....+ ..|.++++|++|+|++|.+.... +| -....+...+..+++|++|+|++|.+.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~---~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIP---EALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSH---HHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchh---HHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 3444444444444433221 22456666777777765442110 00 000122233466677777777776554
Q ss_pred c----cCchhhcCCCCCCEEeccCCCCCCCCc----ccccCC---------CCCCEEcccCCccc-cCCC---cccCCCC
Q 045877 520 Q----ELPSEISYLTSLEILDLRACYNLDKLP----DEIGKL---------KSLTHLDISECFLL-DGIP---KKLSLLS 578 (801)
Q Consensus 520 ~----~lp~~i~~L~~L~~L~Ls~n~~~~~lp----~~~~~L---------~~L~~L~Ls~n~l~-~~~p---~~~~~L~ 578 (801)
. .+|..+..+++|++|+|++|.+....+ ..+..+ ++|++|++++|.+. ..++ ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 4 356666667777777777765432222 223333 67777777777765 3344 3455666
Q ss_pred cccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccc--cChhhhhcccCCcEEEeeccCCCCCCCCC
Q 045877 579 KLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQT--ENLSTVLAFKRLLQLKVSWGGGSANKSTK 656 (801)
Q Consensus 579 ~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 656 (801)
+|++|+ +++|.....++. ...+..+..+++|++|+|++|.+.... ..+..+..+++|+.|+|++|.+.+...
T Consensus 188 ~L~~L~---L~~n~l~~~g~~-~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-- 261 (386)
T 2ca6_A 188 LLHTVK---MVQNGIRPEGIE-HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA-- 261 (386)
T ss_dssp TCCEEE---CCSSCCCHHHHH-HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH--
T ss_pred CcCEEE---CcCCCCCHhHHH-HHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH--
Confidence 677776 666651100000 011226778888999999999875211 115677888899999999888764210
Q ss_pred CCCCCCccchhchhhhhcccccccccc-cccCCCccEEEccCCCCCC-----CCcccCCCCCCCccEEEeeCCcCCCCCC
Q 045877 657 PEPQTGRKDNFFIKTLTKFRTRVTERS-QHVESKLEKLDFQCFPDEK-----LPSWVHPYSFKNLKNLYIRGGRLNSLEG 730 (801)
Q Consensus 657 ~~~~~~~~~~~~l~~L~~~~~~l~~~~-~~~~~~L~~L~L~~n~~~~-----lp~~l~~~~l~~L~~L~L~~n~l~~~~~ 730 (801)
.. +.... ....++|+.|+|++|.+.. +|.++. .++++|++|+|++|.+++..+
T Consensus 262 -------------~~-------l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~-~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 262 -------------AA-------VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID-EKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp -------------HH-------HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH-HHCTTCCEEECTTSBSCTTSH
T ss_pred -------------HH-------HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH-hcCCCceEEEccCCcCCcchh
Confidence 00 01111 0113689999999998877 777763 268999999999999987763
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=2.3e-18 Score=180.37 Aligned_cols=208 Identities=15% Similarity=0.051 Sum_probs=165.8
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...+..+++|+.|++++|.+.... .+..+++|+.|.+.+|.+..+ ..|.++++|++|+|++|.+++.
T Consensus 34 ~~~~~~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~--------- 100 (272)
T 3rfs_A 34 AVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSL--------- 100 (272)
T ss_dssp EECHHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCC---------
T ss_pred ccccccccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCcc---------
Confidence 345678888999999999887653 466788999999999998875 3788999999999999988542
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccC
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLS 575 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~ 575 (801)
.+..+..+++|++|+|++|.+.+..+..++.+++|++|+|++|.+.+..+..++.+++|++|++++|.+.+..+..++
T Consensus 101 --~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 178 (272)
T 3rfs_A 101 --PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178 (272)
T ss_dssp --CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred --ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhc
Confidence 144578899999999999877666666788999999999999977766666678899999999999998877777788
Q ss_pred CCCcccccccccccCCcchhhhhhcccCc-ccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCC
Q 045877 576 LLSKLQVLKGFVISDHAEDDRRWKRWCSL-KDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKS 654 (801)
Q Consensus 576 ~L~~L~~L~~~~l~~n~~~~~~~~~~~~~-~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 654 (801)
.+++|++|+ +++|. ....+ ..+..+++|+.|++++|.+.+. +++|+.|++..|.+.|..+
T Consensus 179 ~l~~L~~L~---L~~N~-------l~~~~~~~~~~l~~L~~L~l~~N~~~~~---------~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 179 KLTQLKDLR---LYQNQ-------LKSVPDGVFDRLTSLQYIWLHDNPWDCT---------CPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp TCTTCCEEE---CCSSC-------CSCCCTTTTTTCTTCCEEECCSSCBCCC---------TTTTHHHHHHHHHTGGGBB
T ss_pred CCccCCEEE---CCCCc-------CCccCHHHHhCCcCCCEEEccCCCcccc---------CcHHHHHHHHHHhCCCccc
Confidence 899999998 88887 33444 4578899999999999976543 4578888888888887665
Q ss_pred CCC
Q 045877 655 TKP 657 (801)
Q Consensus 655 ~~~ 657 (801)
..+
T Consensus 240 ~~~ 242 (272)
T 3rfs_A 240 NSA 242 (272)
T ss_dssp CTT
T ss_pred Ccc
Confidence 443
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=1.6e-19 Score=195.20 Aligned_cols=202 Identities=14% Similarity=0.126 Sum_probs=137.3
Q ss_pred cccccccchhhcchhhhhhccc--cCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 425 LFNFSLSLEEIENKAKDCAMKR--GRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 425 L~~L~Ls~N~l~~~~~~~~~~~--~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
++.+++++|.+. +..+..+ ..++.|.+.+|.+....+. +.++++|++|+|++|.++. ..++..+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~----------~~~~~~~ 114 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV----------STLHGIL 114 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH----------HHHHHHH
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH----------HHHHHHH
Confidence 667888888776 3444444 6788888888888777665 4468889999999887742 2367778
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCC-CCC-CCcccccCCCCCCEEcccCC-ccccC-CCcccCCCC
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACY-NLD-KLPDEIGKLKSLTHLDISEC-FLLDG-IPKKLSLLS 578 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~-~~~-~lp~~~~~L~~L~~L~Ls~n-~l~~~-~p~~~~~L~ 578 (801)
..+++|++|+|++|.+.+..+..++.+++|++|+|++|. +.+ .++..+..+++|++|++++| .+.+. ++..+..++
T Consensus 115 ~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred hhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence 888899999999887776778888888899999998884 433 36666778888888888888 66543 455566666
Q ss_pred -cccccccccccCCcchhhhhhcccCcccccCCccCCeeEeeccc-ccccccChhhhhcccCCcEEEeeccC
Q 045877 579 -KLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININS-EKFQTENLSTVLAFKRLLQLKVSWGG 648 (801)
Q Consensus 579 -~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~-~~~~~~~~~~l~~l~~L~~L~L~~n~ 648 (801)
+|++|+ +++|.. .+.....+..+..+++|+.|++++|. ++... +..+..+++|++|++++|.
T Consensus 195 ~~L~~L~---l~~~~~---~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~--~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 195 ETITQLN---LSGYRK---NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC--FQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp TTCCEEE---CCSCGG---GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG--GGGGGGCTTCCEEECTTCT
T ss_pred cCCCEEE---eCCCcc---cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH--HHHHhCCCCCCEeeCCCCC
Confidence 666666 555520 00112233445566666666666666 33333 4455666666666666664
No 84
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=1.8e-19 Score=210.44 Aligned_cols=349 Identities=14% Similarity=0.020 Sum_probs=191.5
Q ss_pred hhccccccccccchhhcchhhhhhccc--cCceeeecCCcc-cCC-CChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 420 EKIKKLFNFSLSLEEIENKAKDCAMKR--GRIETLFNVSEE-FPE-FKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 420 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~--~~L~~L~l~~n~-i~~-~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
..+++|++|+|++|.+++.....+... .+|+.|.+.++. +.. .....+.++++|++|+|++|.+++.. .
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-------~ 181 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD-------G 181 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCC-------S
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcc-------h
Confidence 366777778888777776666555442 347777776554 111 11222346777777777777664321 0
Q ss_pred hhhhHhhcCCcCCceEeecCCCCC----ccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccc---c
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGI----QELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLL---D 568 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~----~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~---~ 568 (801)
..++..+..+++|++|+|++|.+. +.++..+.++++|++|+|++|.+.+ +|..+..+++|++|+++.+... .
T Consensus 182 ~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~ 260 (592)
T 3ogk_B 182 KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMP 260 (592)
T ss_dssp HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCT
T ss_pred hHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchH
Confidence 114445566777777777776554 2344555667777777777764433 5666677777777777643222 1
Q ss_pred CCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccC
Q 045877 569 GIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGG 648 (801)
Q Consensus 569 ~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~ 648 (801)
..+..+..+++|+.|+ +.... ....+..+..+++|++|+|++|.+.... ....+..+++|+.|+++. .
T Consensus 261 ~~~~~l~~~~~L~~L~---l~~~~-------~~~l~~~~~~~~~L~~L~Ls~~~l~~~~-~~~~~~~~~~L~~L~L~~-~ 328 (592)
T 3ogk_B 261 EKYMNLVFPRKLCRLG---LSYMG-------PNEMPILFPFAAQIRKLDLLYALLETED-HCTLIQKCPNLEVLETRN-V 328 (592)
T ss_dssp TSSSCCCCCTTCCEEE---ETTCC-------TTTGGGGGGGGGGCCEEEETTCCCCHHH-HHHHHTTCTTCCEEEEEG-G
T ss_pred HHHHHhhccccccccC---ccccc-------hhHHHHHHhhcCCCcEEecCCCcCCHHH-HHHHHHhCcCCCEEeccC-c
Confidence 2333455556666665 33332 2234445556666666666666643322 012345566666666652 2
Q ss_pred CCCCCCCCCCCCCCccchhchhhhhccc-----------ccc-----cccccccCCCccEEEccCCCCCC-CCcccCCCC
Q 045877 649 GSANKSTKPEPQTGRKDNFFIKTLTKFR-----------TRV-----TERSQHVESKLEKLDFQCFPDEK-LPSWVHPYS 711 (801)
Q Consensus 649 l~~~~~~~~~~~~~~~~~~~l~~L~~~~-----------~~l-----~~~~~~~~~~L~~L~L~~n~~~~-lp~~l~~~~ 711 (801)
+........ ......++.|+..+ +.+ ...... .++|++|+++++.++. .+..+. ..
T Consensus 329 ~~~~~l~~~-----~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~-~~~L~~L~l~~~~l~~~~~~~l~-~~ 401 (592)
T 3ogk_B 329 IGDRGLEVL-----AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG-CQELEYMAVYVSDITNESLESIG-TY 401 (592)
T ss_dssp GHHHHHHHH-----HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH-CTTCSEEEEEESCCCHHHHHHHH-HH
T ss_pred cCHHHHHHH-----HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh-CccCeEEEeecCCccHHHHHHHH-hh
Confidence 211000000 00001122222221 111 111111 3689999997765542 112222 24
Q ss_pred CCCccEEEee----CCcCCCCCC--------Ccccccceecc-------------------cccccccccccccc-----
Q 045877 712 FKNLKNLYIR----GGRLNSLEG--------SEWETVKVLRL-------------------KYLNELKIDWKGLQ----- 755 (801)
Q Consensus 712 l~~L~~L~L~----~n~l~~~~~--------~~f~~L~~l~L-------------------~~L~~L~l~~n~l~----- 755 (801)
+++|+.|+|+ .|.+++.+. ..+++|+.+++ ++|+.|++++|.++
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 8899999997 556776532 23566666665 23666677777664
Q ss_pred ---CcCCCCceeeccCCCCCcc--cCCCCCcccccCCcceEeCCCcccc
Q 045877 756 ---ELFPKLEYLEKFKCHKVTL--CPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 756 ---~~~p~L~~L~l~~c~~L~~--lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
..+++|++|++++|+ ++. ++. .+..+++|++|++++|++.
T Consensus 482 ~~~~~~~~L~~L~l~~n~-l~~~~~~~---~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCC-FSERAIAA---AVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHTCCTTCCEEEEESCC-CBHHHHHH---HHHHCSSCCEEEEESCBCC
T ss_pred HHHhcCcccCeeeccCCC-CcHHHHHH---HHHhcCccCeeECcCCcCC
Confidence 345667777777775 432 111 2346889999999999865
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=4.3e-18 Score=174.62 Aligned_cols=198 Identities=15% Similarity=0.062 Sum_probs=123.1
Q ss_pred CCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCc-hhhcCCCCCCEEeccC-CCCCCCCcc
Q 045877 471 EKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELP-SEISYLTSLEILDLRA-CYNLDKLPD 548 (801)
Q Consensus 471 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp-~~i~~L~~L~~L~Ls~-n~~~~~lp~ 548 (801)
.+|+.|+|++|+++... +..|..+++|++|+|++|..++.++ ..|.++++|++|+|++ |.+....+.
T Consensus 31 ~~l~~L~l~~n~l~~i~-----------~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIP-----------SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp TTCCEEEEESCCCSEEC-----------TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred CcccEEEEeCCcceEEC-----------HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 37888888888774321 3357778888888888875344444 4677788888888887 655555456
Q ss_pred cccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecc-cccccc
Q 045877 549 EIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININ-SEKFQT 627 (801)
Q Consensus 549 ~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n-~~~~~~ 627 (801)
.|.++++|++|++++|.+.+ +|. +..+.+|+ .|++|++++| .+....
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~------------------------------~L~~L~l~~N~~l~~i~ 147 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTD------------------------------IFFILEITDNPYMTSIP 147 (239)
T ss_dssp SEECCTTCCEEEEEEECCCS-CCC-CTTCCBCC------------------------------SEEEEEEESCTTCCEEC
T ss_pred HhCCCCCCCEEeCCCCCCcc-ccc-cccccccc------------------------------cccEEECCCCcchhhcC
Confidence 67777888888888777653 443 43333333 1226666666 555444
Q ss_pred cChhhhhcccCCc-EEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCC-CCCCCc
Q 045877 628 ENLSTVLAFKRLL-QLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFP-DEKLPS 705 (801)
Q Consensus 628 ~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~-~~~lp~ 705 (801)
...|.++++|+ .|++++|.+....... ... ++|+.|+|++|. +..+|.
T Consensus 148 --~~~~~~l~~L~~~L~l~~n~l~~i~~~~---------------------------~~~-~~L~~L~L~~n~~l~~i~~ 197 (239)
T 2xwt_C 148 --VNAFQGLCNETLTLKLYNNGFTSVQGYA---------------------------FNG-TKLDAVYLNKNKYLTVIDK 197 (239)
T ss_dssp --TTTTTTTBSSEEEEECCSCCCCEECTTT---------------------------TTT-CEEEEEECTTCTTCCEECT
T ss_pred --cccccchhcceeEEEcCCCCCcccCHhh---------------------------cCC-CCCCEEEcCCCCCcccCCH
Confidence 44566677777 7777777665322111 111 467777777773 666655
Q ss_pred ccCCCCC-CCccEEEeeCCcCCCCCCCcccccceeccc
Q 045877 706 WVHPYSF-KNLKNLYIRGGRLNSLEGSEWETVKVLRLK 742 (801)
Q Consensus 706 ~l~~~~l-~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~ 742 (801)
..+ ..+ ++|++|+|++|.+++++...|++|+.|.+.
T Consensus 198 ~~~-~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~ 234 (239)
T 2xwt_C 198 DAF-GGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234 (239)
T ss_dssp TTT-TTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECT
T ss_pred HHh-hccccCCcEEECCCCccccCChhHhccCceeecc
Confidence 433 366 778888888888777766555555444443
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.75 E-value=3e-19 Score=195.36 Aligned_cols=261 Identities=12% Similarity=0.093 Sum_probs=172.9
Q ss_pred cccccchhhcchhhhhhccccCceeeecCCcccCCCCh----hhhccCC-CCCEEEcCCcccCCCCCCcccccchhhhHh
Q 045877 427 NFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKY----DWFSKLE-KIKVLYLGRWQSTVDDIPHIEIESTDYLKG 501 (801)
Q Consensus 427 ~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~----~~f~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~ 501 (801)
+++|+.|++++..|..+....+|+.|++.+|.+..... ..|.+++ +|++|+|++|.++... ...+...
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-------~~~l~~~ 74 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKN-------SDELVQI 74 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSC-------HHHHHHH
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHH-------HHHHHHH
Confidence 46788899999888888777779999999999988877 7788888 8999999999885422 0122233
Q ss_pred hcCC-cCCceEeecCCCCCccCchhh----cCC-CCCCEEeccCCCCCCCCccccc----C-CCCCCEEcccCCccccC-
Q 045877 502 LKNM-KELRLLSLQGMSGIQELPSEI----SYL-TSLEILDLRACYNLDKLPDEIG----K-LKSLTHLDISECFLLDG- 569 (801)
Q Consensus 502 l~~l-~~L~~L~Ls~n~~~~~lp~~i----~~L-~~L~~L~Ls~n~~~~~lp~~~~----~-L~~L~~L~Ls~n~l~~~- 569 (801)
+... ++|++|+|++|.+.+..+..+ ..+ ++|++|+|++|.+....+..+. . .++|++|+|++|.+...
T Consensus 75 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 154 (362)
T 3goz_A 75 LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS 154 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH
Confidence 3333 889999999987665555544 444 8899999999876655554433 3 26899999999987743
Q ss_pred ---CCcccCCCC-cccccccccccCCcchhhhhhcccC-c----ccccCC-ccCCeeEeeccccccccc--Chhhhhc-c
Q 045877 570 ---IPKKLSLLS-KLQVLKGFVISDHAEDDRRWKRWCS-L----KDLEKL-EHLRKLTININSEKFQTE--NLSTVLA-F 636 (801)
Q Consensus 570 ---~p~~~~~L~-~L~~L~~~~l~~n~~~~~~~~~~~~-~----~~l~~L-~~L~~L~L~~n~~~~~~~--~~~~l~~-l 636 (801)
++..+..+. +|++|+ +++|. .... + ..+..+ ++|++|+|++|.+..... .+..+.. .
T Consensus 155 ~~~l~~~l~~~~~~L~~L~---Ls~n~-------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~ 224 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLN---LRGNN-------LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP 224 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEE---CTTSC-------GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCCccccEee---ecCCC-------CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCC
Confidence 333344554 778877 77776 2211 1 234445 488888888888765331 1344544 3
Q ss_pred cCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCC--------cccC
Q 045877 637 KRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLP--------SWVH 708 (801)
Q Consensus 637 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp--------~~l~ 708 (801)
++|+.|+|++|.+.+..... +...... .++|+.|+|++|.+..+. ..+.
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~----------------------l~~~~~~-l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~ 281 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLEN----------------------LKLLKDS-LKHLQTVYLDYDIVKNMSKEQCKALGAAFP 281 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHH----------------------HHHTTTT-TTTCSEEEEEHHHHTTCCHHHHHHHHTTST
T ss_pred CCceEEECcCCCCCcHHHHH----------------------HHHHHhc-CCCccEEEeccCCccccCHHHHHHHHHHhc
Confidence 48888888888776543210 0111111 257888888887633333 2333
Q ss_pred CCCCCCccEEEeeCCcCCCCC
Q 045877 709 PYSFKNLKNLYIRGGRLNSLE 729 (801)
Q Consensus 709 ~~~l~~L~~L~L~~n~l~~~~ 729 (801)
.+++|++|+|++|.+....
T Consensus 282 --~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 282 --NIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp --TCCEEEEECTTSCBCCGGG
T ss_pred --cCCceEEEecCCCcCCCcc
Confidence 7778888888888876553
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=3.9e-18 Score=174.95 Aligned_cols=181 Identities=15% Similarity=0.071 Sum_probs=123.3
Q ss_pred CceeeecCCcccCCCChhhhccCCCCCEEEcCCcc-cCCCCCCcccccchhhhHhhcCCcCCceEeecC-CCCCccCchh
Q 045877 448 RIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQ-STVDDIPHIEIESTDYLKGLKNMKELRLLSLQG-MSGIQELPSE 525 (801)
Q Consensus 448 ~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~-n~~~~~lp~~ 525 (801)
.++.|.+.+|.+..+++..|.++++|++|+|++|. ++.. -+..|.++++|++|+|++ |.+.+..+..
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-----------~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-----------ESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-----------CTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-----------CHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 56677777777777777777777777777777775 5321 123567777777777776 5444444456
Q ss_pred hcCCCCCCEEeccCCCCCCCCcccccCCCCCC---EEcccCC-ccccCCCcccCCCCccc-ccccccccCCcchhhhhhc
Q 045877 526 ISYLTSLEILDLRACYNLDKLPDEIGKLKSLT---HLDISEC-FLLDGIPKKLSLLSKLQ-VLKGFVISDHAEDDRRWKR 600 (801)
Q Consensus 526 i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~---~L~Ls~n-~l~~~~p~~~~~L~~L~-~L~~~~l~~n~~~~~~~~~ 600 (801)
|.++++|++|+|++|.+.+ +|. +..+++|+ +|++++| .+.+..+..|..+++|+ +|+ +++|. .
T Consensus 101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~---l~~n~-------l 168 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK---LYNNG-------F 168 (239)
T ss_dssp EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEE---CCSCC-------C
T ss_pred hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEE---cCCCC-------C
Confidence 7777778888887775544 665 67777777 7888877 66655555577777777 777 66666 3
Q ss_pred ccCcccccCCccCCeeEeeccc-ccccccChhhhhcc-cCCcEEEeeccCCCCCC
Q 045877 601 WCSLKDLEKLEHLRKLTININS-EKFQTENLSTVLAF-KRLLQLKVSWGGGSANK 653 (801)
Q Consensus 601 ~~~~~~l~~L~~L~~L~L~~n~-~~~~~~~~~~l~~l-~~L~~L~L~~n~l~~~~ 653 (801)
..++......++|+.|++++|+ +.... ...|.++ ++|+.|++++|.+.+..
T Consensus 169 ~~i~~~~~~~~~L~~L~L~~n~~l~~i~--~~~~~~l~~~L~~L~l~~N~l~~l~ 221 (239)
T 2xwt_C 169 TSVQGYAFNGTKLDAVYLNKNKYLTVID--KDAFGGVYSGPSLLDVSQTSVTALP 221 (239)
T ss_dssp CEECTTTTTTCEEEEEECTTCTTCCEEC--TTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred cccCHhhcCCCCCCEEEcCCCCCcccCC--HHHhhccccCCcEEECCCCccccCC
Confidence 3344433333788888888884 76554 5667778 88888888888877543
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=7.8e-18 Score=179.67 Aligned_cols=197 Identities=20% Similarity=0.156 Sum_probs=117.2
Q ss_pred ccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCc
Q 045877 468 SKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLP 547 (801)
Q Consensus 468 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp 547 (801)
..+++|+.|++++|.++ .++ .+..+++|++|+|++|.+ ..++. +..+++|++|+|++|.+. .++
T Consensus 38 ~~l~~L~~L~l~~~~i~------------~l~-~~~~l~~L~~L~L~~n~i-~~~~~-~~~l~~L~~L~L~~n~l~-~~~ 101 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT------------TIE-GVQYLNNLIGLELKDNQI-TDLAP-LKNLTKITELELSGNPLK-NVS 101 (308)
T ss_dssp HHHHTCCEEECTTSCCC------------CCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCCSCCEEECCSCCCS-CCG
T ss_pred HHcCCcCEEEeeCCCcc------------Cch-hhhccCCCCEEEccCCcC-CCChh-HccCCCCCEEEccCCcCC-Cch
Confidence 34445555555555552 122 345555555555555532 33333 555556666666655432 232
Q ss_pred ccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccc
Q 045877 548 DEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQT 627 (801)
Q Consensus 548 ~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~ 627 (801)
.+..+++|++|++++|.+.+ ++. +..+++|++|+ +++|. ....+ .+..+++|+.|++++|.+....
T Consensus 102 -~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~---l~~n~-------l~~~~-~l~~l~~L~~L~l~~n~l~~~~ 167 (308)
T 1h6u_A 102 -AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLY---LDLNQ-------ITNIS-PLAGLTNLQYLSIGNAQVSDLT 167 (308)
T ss_dssp -GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEE---CCSSC-------CCCCG-GGGGCTTCCEEECCSSCCCCCG
T ss_pred -hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEE---CCCCc-------cCcCc-cccCCCCccEEEccCCcCCCCh
Confidence 45555666666666665543 222 55555666655 55554 22222 2667777888888888776543
Q ss_pred cChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCccc
Q 045877 628 ENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWV 707 (801)
Q Consensus 628 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l 707 (801)
.+..+++|+.|++++|.+.+..+ ... .++|+.|+|++|.+..++. +
T Consensus 168 ----~l~~l~~L~~L~l~~n~l~~~~~----------------------------l~~-l~~L~~L~L~~N~l~~~~~-l 213 (308)
T 1h6u_A 168 ----PLANLSKLTTLKADDNKISDISP----------------------------LAS-LPNLIEVHLKNNQISDVSP-L 213 (308)
T ss_dssp ----GGTTCTTCCEEECCSSCCCCCGG----------------------------GGG-CTTCCEEECTTSCCCBCGG-G
T ss_pred ----hhcCCCCCCEEECCCCccCcChh----------------------------hcC-CCCCCEEEccCCccCcccc-c
Confidence 27778888888888887764321 111 3678888888888877764 4
Q ss_pred CCCCCCCccEEEeeCCcCCCCCC
Q 045877 708 HPYSFKNLKNLYIRGGRLNSLEG 730 (801)
Q Consensus 708 ~~~~l~~L~~L~L~~n~l~~~~~ 730 (801)
. .+++|+.|+|++|.+++.+.
T Consensus 214 ~--~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 214 A--NTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp T--TCTTCCEEEEEEEEEECCCE
T ss_pred c--CCCCCCEEEccCCeeecCCe
Confidence 4 88888888888888877654
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.74 E-value=4.3e-19 Score=194.11 Aligned_cols=268 Identities=11% Similarity=0.047 Sum_probs=190.6
Q ss_pred eecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCc-CCceEeecCCCCCccCchhhcCC-
Q 045877 452 LFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMK-ELRLLSLQGMSGIQELPSEISYL- 529 (801)
Q Consensus 452 L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~-~L~~L~Ls~n~~~~~lp~~i~~L- 529 (801)
+.+..|.+.+..+.++...++|+.|+|++|.++... ...+...+..++ +|++|+|++|.+.+..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 75 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSIS-------TVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSC-------HHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHH-------HHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHH
Confidence 456778888888888888888999999999986432 123347788898 99999999997776667777765
Q ss_pred ----CCCCEEeccCCCCCCCCccccc----CC-CCCCEEcccCCccccCCCcc----cCC-CCcccccccccccCCcchh
Q 045877 530 ----TSLEILDLRACYNLDKLPDEIG----KL-KSLTHLDISECFLLDGIPKK----LSL-LSKLQVLKGFVISDHAEDD 595 (801)
Q Consensus 530 ----~~L~~L~Ls~n~~~~~lp~~~~----~L-~~L~~L~Ls~n~l~~~~p~~----~~~-L~~L~~L~~~~l~~n~~~~ 595 (801)
++|++|+|++|.+.+..+..+. .+ ++|++|++++|.+....+.. +.. .++|++|+ +++|....
T Consensus 76 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~---Ls~N~l~~ 152 (362)
T 3goz_A 76 AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLN---LRGNDLGI 152 (362)
T ss_dssp HTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEE---CTTSCGGG
T ss_pred hccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEE---ccCCcCCH
Confidence 9999999999987766666444 44 89999999999987655544 344 36899999 88887110
Q ss_pred hhhhcccCcccccCCc-cCCeeEeecccccccccChh----hhhcc-cCCcEEEeeccCCCCCCCCCCCCCCCccchhch
Q 045877 596 RRWKRWCSLKDLEKLE-HLRKLTININSEKFQTENLS----TVLAF-KRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFI 669 (801)
Q Consensus 596 ~~~~~~~~~~~l~~L~-~L~~L~L~~n~~~~~~~~~~----~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l 669 (801)
. ....+...+..++ +|++|+|++|.+.... .. .+..+ ++|+.|+|++|.+.+....
T Consensus 153 ~--~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~--~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~-------------- 214 (362)
T 3goz_A 153 K--SSDELIQILAAIPANVNSLNLRGNNLASKN--CAELAKFLASIPASVTSLDLSANLLGLKSYA-------------- 214 (362)
T ss_dssp S--CHHHHHHHHHTSCTTCCEEECTTSCGGGSC--HHHHHHHHHTSCTTCCEEECTTSCGGGSCHH--------------
T ss_pred H--HHHHHHHHHhcCCccccEeeecCCCCchhh--HHHHHHHHHhCCCCCCEEECCCCCCChhHHH--------------
Confidence 0 0012234455665 9999999999987665 43 34455 5999999999988753210
Q ss_pred hhhhcccccccccccccCCCccEEEccCCCCCCCCcc---cCCCCCCCccEEEeeCCcCCCCCCCcccccc--eeccccc
Q 045877 670 KTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSW---VHPYSFKNLKNLYIRGGRLNSLEGSEWETVK--VLRLKYL 744 (801)
Q Consensus 670 ~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~---l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~--~l~L~~L 744 (801)
. +.......+++|+.|+|++|.+...+.. .....+++|++|+|++|.+.++....+..+. .-.+.+|
T Consensus 215 -~-------l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L 286 (362)
T 3goz_A 215 -E-------LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286 (362)
T ss_dssp -H-------HHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEE
T ss_pred -H-------HHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCce
Confidence 0 1112222246899999999988776541 1114889999999999998777653221111 1256778
Q ss_pred ccccccccccc
Q 045877 745 NELKIDWKGLQ 755 (801)
Q Consensus 745 ~~L~l~~n~l~ 755 (801)
+.|++++|.+.
T Consensus 287 ~~LdL~~N~l~ 297 (362)
T 3goz_A 287 ILVDKNGKEIH 297 (362)
T ss_dssp EEECTTSCBCC
T ss_pred EEEecCCCcCC
Confidence 88888888876
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=8.5e-19 Score=189.48 Aligned_cols=250 Identities=17% Similarity=0.119 Sum_probs=188.0
Q ss_pred cCceeeecCCcccCCCChhhhccC--CCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCcc-Cc
Q 045877 447 GRIETLFNVSEEFPEFKYDWFSKL--EKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQE-LP 523 (801)
Q Consensus 447 ~~L~~L~l~~n~i~~~~~~~f~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-lp 523 (801)
..++.+.+..+.+. +..+..+ +.++.|++++|.+.+. +..+..+++|++|+|++|.+.+. +|
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~------------~~~~~~~~~L~~L~L~~~~l~~~~~~ 111 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQP------------LAEHFSPFRVQHMDLSNSVIEVSTLH 111 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSC------------CCSCCCCBCCCEEECTTCEECHHHHH
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCcccccc------------chhhccCCCCCEEEccCCCcCHHHHH
Confidence 34778888888765 5677777 8999999999998542 23366899999999999976655 88
Q ss_pred hhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCC-cccc-CCCcccCCCCcccccccccccCC-cchhhhhhc
Q 045877 524 SEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISEC-FLLD-GIPKKLSLLSKLQVLKGFVISDH-AEDDRRWKR 600 (801)
Q Consensus 524 ~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n-~l~~-~~p~~~~~L~~L~~L~~~~l~~n-~~~~~~~~~ 600 (801)
..+..+++|++|+|++|.+.+..+..++.+++|++|++++| .+.+ .++..+..+++|++|+ ++++ . +..
T Consensus 112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~---l~~~~~-----l~~ 183 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN---LSWCFD-----FTE 183 (336)
T ss_dssp HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE---CCCCTT-----CCH
T ss_pred HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc---CCCCCC-----cCh
Confidence 88999999999999999877788888999999999999999 5654 3677788899999999 7777 5 111
Q ss_pred ccCcccccCCc-cCCeeEeeccc--cc-ccccChhhhhcccCCcEEEeeccC-CCCCCCCCCCCCCCccchhchhhhhcc
Q 045877 601 WCSLKDLEKLE-HLRKLTININS--EK-FQTENLSTVLAFKRLLQLKVSWGG-GSANKSTKPEPQTGRKDNFFIKTLTKF 675 (801)
Q Consensus 601 ~~~~~~l~~L~-~L~~L~L~~n~--~~-~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~~l~~L~~~ 675 (801)
...+..+..++ +|++|++++|. +. ... +..+..+++|+.|++++|. +++...
T Consensus 184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l--~~~~~~~~~L~~L~l~~~~~l~~~~~--------------------- 240 (336)
T 2ast_B 184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDL--STLVRRCPNLVHLDLSDSVMLKNDCF--------------------- 240 (336)
T ss_dssp HHHHHHHHHSCTTCCEEECCSCGGGSCHHHH--HHHHHHCTTCSEEECTTCTTCCGGGG---------------------
T ss_pred HHHHHHHHhcccCCCEEEeCCCcccCCHHHH--HHHHhhCCCCCEEeCCCCCcCCHHHH---------------------
Confidence 12455678899 99999999995 33 222 5667889999999999997 443211
Q ss_pred cccccccccccCCCccEEEccCCCCCCCCc---ccCCCCCCCccEEEeeCCcCCCCCCCcccccceecc-cccccccccc
Q 045877 676 RTRVTERSQHVESKLEKLDFQCFPDEKLPS---WVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRL-KYLNELKIDW 751 (801)
Q Consensus 676 ~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~---~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L-~~L~~L~l~~ 751 (801)
.. ... .++|+.|+|++|.. ..+. .+. .+++|++|+|++| +....+. .+ ..|+.|++++
T Consensus 241 ----~~-l~~-l~~L~~L~l~~~~~-~~~~~~~~l~--~~~~L~~L~l~~~----i~~~~~~-----~l~~~l~~L~l~~ 302 (336)
T 2ast_B 241 ----QE-FFQ-LNYLQHLSLSRCYD-IIPETLLELG--EIPTLKTLQVFGI----VPDGTLQ-----LLKEALPHLQINC 302 (336)
T ss_dssp ----GG-GGG-CTTCCEEECTTCTT-CCGGGGGGGG--GCTTCCEEECTTS----SCTTCHH-----HHHHHSTTSEESC
T ss_pred ----HH-HhC-CCCCCEeeCCCCCC-CCHHHHHHHh--cCCCCCEEeccCc----cCHHHHH-----HHHhhCcceEEec
Confidence 11 112 27899999999862 2233 344 8999999999999 3333332 22 4578888888
Q ss_pred ccccCcCCC
Q 045877 752 KGLQELFPK 760 (801)
Q Consensus 752 n~l~~~~p~ 760 (801)
|.+++..|.
T Consensus 303 n~l~~~~~~ 311 (336)
T 2ast_B 303 SHFTTIARP 311 (336)
T ss_dssp CCSCCTTCS
T ss_pred ccCccccCC
Confidence 888866664
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=3.2e-17 Score=169.46 Aligned_cols=146 Identities=18% Similarity=0.074 Sum_probs=74.8
Q ss_pred cccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcC
Q 045877 425 LFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKN 504 (801)
Q Consensus 425 L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~ 504 (801)
.+.++++++.++.++.... ..++.|.+.+|.+..+.+..|.++++|++|+|++|.+++. .+..|..
T Consensus 16 ~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------~~~~~~~ 81 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-----------SAGVFDD 81 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-----------CTTTTTT
T ss_pred CeEEecCCCCccccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-----------CHhHhcc
Confidence 3455666666654443221 3455555555555555555555555666666665555321 1334455
Q ss_pred CcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccc
Q 045877 505 MKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLK 584 (801)
Q Consensus 505 l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~ 584 (801)
+++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+..+..|..+++|++|+|++|.+.+..+..|+.+++|++|+
T Consensus 82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE
Confidence 55555555555544433334455555555555555544433333445555555555555555433333344444444444
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=6.4e-17 Score=167.20 Aligned_cols=180 Identities=13% Similarity=0.027 Sum_probs=154.1
Q ss_pred cCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhh
Q 045877 447 GRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526 (801)
Q Consensus 447 ~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i 526 (801)
...+.+...++.+..++.... +.|+.|+|++|.+++. .+..|.++++|++|+|++|.+.+..+..+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n~l~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 79 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP---ADTEKLDLQSTGLATL-----------SDATFRGLTKLTWLNLDYNQLQTLSAGVF 79 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC---TTCCEEECTTSCCCCC-----------CTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred CCCeEEecCCCCccccCCCCC---CCCCEEEccCCCcCcc-----------CHhHhcCcccCCEEECCCCcCCccCHhHh
Confidence 456778888898888765443 5899999999999643 24578999999999999998877777889
Q ss_pred cCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcc-
Q 045877 527 SYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLK- 605 (801)
Q Consensus 527 ~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~- 605 (801)
..+++|++|+|++|.+.+..+..|..+++|++|+|++|.+.+..+..|..+++|++|+ +++|. ....+.
T Consensus 80 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~---Ls~N~-------l~~~~~~ 149 (251)
T 3m19_A 80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR---LNTNQ-------LQSIPAG 149 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE---CCSSC-------CCCCCTT
T ss_pred ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE---CcCCc-------CCccCHH
Confidence 9999999999999988877777889999999999999999876666789999999999 88888 445554
Q ss_pred cccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCC
Q 045877 606 DLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSAN 652 (801)
Q Consensus 606 ~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 652 (801)
.|..+++|++|+|++|.+.... +..+..+++|+.|+|++|.+...
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQSVP--HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HcCcCcCCCEEECCCCcCCccC--HHHHhCCCCCCEEEeeCCceeCC
Confidence 6899999999999999998776 66789999999999999998764
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=2.6e-18 Score=189.62 Aligned_cols=273 Identities=11% Similarity=-0.002 Sum_probs=194.7
Q ss_pred hhhhhhhccccccccccchhhcchhhh----hhccccCceeeecCCcccCCC---Chhh-------hccCCCCCEEEcCC
Q 045877 415 KAVEFEKIKKLFNFSLSLEEIENKAKD----CAMKRGRIETLFNVSEEFPEF---KYDW-------FSKLEKIKVLYLGR 480 (801)
Q Consensus 415 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~~~~L~~L~l~~n~i~~~---~~~~-------f~~l~~L~~L~Ls~ 480 (801)
....+..+++|+.|+|++|+|+...+. .+..+++|+.|.+.+|.+..+ .+.. |..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 455678889999999999999887554 466899999999988655432 3333 47899999999999
Q ss_pred cccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCc----hhhcCC---------CCCCEEeccCCCCC-CCC
Q 045877 481 WQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELP----SEISYL---------TSLEILDLRACYNL-DKL 546 (801)
Q Consensus 481 n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp----~~i~~L---------~~L~~L~Ls~n~~~-~~l 546 (801)
|.++... ...++..+..+++|++|+|++|.+....+ ..+..+ ++|++|+|++|.+. ..+
T Consensus 104 n~l~~~~-------~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~ 176 (386)
T 2ca6_A 104 NAFGPTA-------QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176 (386)
T ss_dssp CCCCTTT-------HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred CcCCHHH-------HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH
Confidence 9986422 12478889999999999999997643333 334444 99999999999776 445
Q ss_pred c---ccccCCCCCCEEcccCCcccc-----CCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEe
Q 045877 547 P---DEIGKLKSLTHLDISECFLLD-----GIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTI 618 (801)
Q Consensus 547 p---~~~~~L~~L~~L~Ls~n~l~~-----~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L 618 (801)
+ ..+..+++|++|++++|.+.. .++..+..+++|++|+ +++|..... ....++..+..+++|++|+|
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~---Ls~n~l~~~--g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD---LQDNTFTHL--GSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEE---CCSSCCHHH--HHHHHHHHGGGCTTCCEEEC
T ss_pred HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEE---CcCCCCCcH--HHHHHHHHHccCCCcCEEEC
Confidence 5 467789999999999998862 3444788999999999 888871110 01335667889999999999
Q ss_pred ecccccccc--cChhhhhc--ccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEE
Q 045877 619 NINSEKFQT--ENLSTVLA--FKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLD 694 (801)
Q Consensus 619 ~~n~~~~~~--~~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~ 694 (801)
++|.+.... ..+..+.. +++|+.|+|++|.+.+.. +.. ++.......++|+.|+
T Consensus 252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g---------------~~~-------l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA---------------VRT-------LKTVIDEKMPDLLFLE 309 (386)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH---------------HHH-------HHHHHHHHCTTCCEEE
T ss_pred CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH---------------HHH-------HHHHHHhcCCCceEEE
Confidence 999987653 11345533 899999999999876410 000 1111111136999999
Q ss_pred ccCCCCCCCCc---ccCCCCCCCccEEEeeC
Q 045877 695 FQCFPDEKLPS---WVHPYSFKNLKNLYIRG 722 (801)
Q Consensus 695 L~~n~~~~lp~---~l~~~~l~~L~~L~L~~ 722 (801)
|++|.+..... .+. ..++.++.+++..
T Consensus 310 l~~N~l~~~~~~~~~l~-~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 310 LNGNRFSEEDDVVDEIR-EVFSTRGRGELDE 339 (386)
T ss_dssp CTTSBSCTTSHHHHHHH-HHHHHHTCCEECC
T ss_pred ccCCcCCcchhHHHHHH-HHhhhcCcchhhh
Confidence 99998876552 222 2345555555544
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=6.3e-17 Score=175.97 Aligned_cols=215 Identities=18% Similarity=0.083 Sum_probs=138.1
Q ss_pred CEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCc-hhhcCCCCCCEEeccCCCCCCCCcc-ccc
Q 045877 474 KVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELP-SEISYLTSLEILDLRACYNLDKLPD-EIG 551 (801)
Q Consensus 474 ~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~-~~~ 551 (801)
++++.++++++ .+|..+ ..+|++|+|++|.+ ..+| .+|.+|++|++|+|++|.+.+.+|. .|.
T Consensus 12 ~~v~C~~~~Lt------------~iP~~l--~~~l~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~ 76 (350)
T 4ay9_X 12 RVFLCQESKVT------------EIPSDL--PRNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76 (350)
T ss_dssp TEEEEESTTCC------------SCCTTC--CTTCSEEEEESCCC-SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC
T ss_pred CEEEecCCCCC------------ccCcCc--CCCCCEEEccCCcC-CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh
Confidence 67778887774 344444 35788888888754 4555 4678888888888888877666654 567
Q ss_pred CCCCCCE-EcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCc-ccccCCccCCeeEeec-cccccccc
Q 045877 552 KLKSLTH-LDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSL-KDLEKLEHLRKLTINI-NSEKFQTE 628 (801)
Q Consensus 552 ~L~~L~~-L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~-~~l~~L~~L~~L~L~~-n~~~~~~~ 628 (801)
++++|++ +.+++|++....|..|..+++|++|+ +++|. ....+ ..+....++..|++.+ +.+....
T Consensus 77 ~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~---l~~n~-------l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~- 145 (350)
T 4ay9_X 77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL---ISNTG-------IKHLPDVHKIHSLQKVLLDIQDNINIHTIE- 145 (350)
T ss_dssp SCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE---EEEEC-------CSSCCCCTTCCBSSCEEEEEESCTTCCEEC-
T ss_pred cchhhhhhhcccCCcccccCchhhhhcccccccc---ccccc-------cccCCchhhcccchhhhhhhcccccccccc-
Confidence 7877765 55566777766677778888888887 66666 33333 2344555666777755 3444333
Q ss_pred Chhhhhccc-CCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEcc-CCCCCCCCcc
Q 045877 629 NLSTVLAFK-RLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQ-CFPDEKLPSW 706 (801)
Q Consensus 629 ~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~-~n~~~~lp~~ 706 (801)
...|..+. .|+.|++++|.+.......+ . ..+|+.|++. +|.++.+|..
T Consensus 146 -~~~f~~~~~~l~~L~L~~N~i~~i~~~~f---------------------------~-~~~L~~l~l~~~n~l~~i~~~ 196 (350)
T 4ay9_X 146 -RNSFVGLSFESVILWLNKNGIQEIHNSAF---------------------------N-GTQLDELNLSDNNNLEELPND 196 (350)
T ss_dssp -TTSSTTSBSSCEEEECCSSCCCEECTTSS---------------------------T-TEEEEEEECTTCTTCCCCCTT
T ss_pred -ccchhhcchhhhhhccccccccCCChhhc---------------------------c-ccchhHHhhccCCcccCCCHH
Confidence 34445543 57777887777764332211 1 1467777776 4677777765
Q ss_pred cCCCCCCCccEEEeeCCcCCCCCCCcccccceeccccc
Q 045877 707 VHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYL 744 (801)
Q Consensus 707 l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L 744 (801)
.+ ..+++|++|+|++|+|+.++...|.+|+.|...++
T Consensus 197 ~f-~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 197 VF-HGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233 (350)
T ss_dssp TT-TTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC
T ss_pred Hh-ccCcccchhhcCCCCcCccChhhhccchHhhhccC
Confidence 43 47788888888888887777766655555544333
No 95
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.69 E-value=5.9e-18 Score=214.89 Aligned_cols=187 Identities=9% Similarity=0.142 Sum_probs=139.9
Q ss_pred CCCCcceeecCcchhhHhhhhccceeeCCC-CChhH---HHHHHHHhhhcccccccccccchhhhhHHHHHhhhccCCcc
Q 045877 90 KISSSEQIKKNEEKDASEADQSVQVHPLNQ-LDHDL---IYMQYALKRLKGFEGTFGKSIQDLKDDLELVLTSQATGSKS 165 (801)
Q Consensus 90 ~~~s~~~vttr~~~~~~~~~~~~~~~~l~~-l~~~~---lf~~~af~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (801)
..+++|+||||.+.++..+....+++++.. |+.+| ||...++...
T Consensus 255 ~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~------------------------------- 303 (1249)
T 3sfz_A 255 DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK------------------------------- 303 (1249)
T ss_dssp CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-------------------------------
T ss_pred cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-------------------------------
Confidence 468899999999999865544678999996 99998 7776663211
Q ss_pred chhhhhhhHHHHHHHHHHHHHhCCCCCcccCCCCC---chhHHhhhccCCC---CCCCCccccccccchhHHHHHHhhhc
Q 045877 166 VQEVETLQDEIRRISQKFLNLKSKIPPVNSSSSDD---SDAQQRRRINQSK---DLPNMADKTRFKEHDFFIEFKKIFQS 239 (801)
Q Consensus 166 ~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~~l~~---~~~~~W~~~l~~~---~~~~~~~~~~~~~~~i~~~L~~SYd~ 239 (801)
+++.+++++|+++|+|+|||| +++|+ .....|+.+++.. ...............+..+|.+||+.
T Consensus 304 --------~~~~~~~~~i~~~~~glPLal-~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~ 374 (1249)
T 3sfz_A 304 --------EDLPAEAHSIIKECKGSPLVV-SLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEM 374 (1249)
T ss_dssp --------TTCCTHHHHHHHHTTTCHHHH-HHHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHT
T ss_pred --------hhCcHHHHHHHHHhCCCHHHH-HHHHHHhhcChhHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHh
Confidence 223457899999999999996 33333 1224565544331 11111111111113699999999999
Q ss_pred cC-CCccccceecccCCCceechhhHHHHHHHcCCCcccccCCCChHHHHHHHHHHHHhcCcccccccccCCccceEEec
Q 045877 240 LG-NDQSCLLCFAVFPENAVIKKRLLVNWWIGEGFLKERIQGENSAEKAADKLLREFEEKGFILPVDKKHRGVANSFRMS 318 (801)
Q Consensus 240 L~-~~K~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~~~~~~~L~~r~ll~~~~~~~~~~~~~~~mH 318 (801)
|+ ++|.||+|||+||+++.|+++.++.+|.++ ++.++.++++|+++|||+.... +...+|+||
T Consensus 375 L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------------~~~~~~~l~~L~~~sl~~~~~~---~~~~~~~~h 438 (1249)
T 3sfz_A 375 LREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------------TEEVEDILQEFVNKSLLFCNRN---GKSFCYYLH 438 (1249)
T ss_dssp SCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------------HHHHHHHHHHHHHTTSCEEEES---SSSEEEECC
T ss_pred CCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------------HHHHHHHHHHHHhccceEEecC---CCceEEEec
Confidence 99 999999999999999999999999999554 4678999999999999986543 444579999
Q ss_pred hhHHHHHHHHhhcC
Q 045877 319 PLVRSAVITLAKEN 332 (801)
Q Consensus 319 dlv~dl~~~~a~~e 332 (801)
|+||++|+..+.+|
T Consensus 439 ~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 439 DLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHTGGG
T ss_pred HHHHHHHHhhhhHH
Confidence 99999999998775
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=1.9e-16 Score=167.44 Aligned_cols=175 Identities=21% Similarity=0.229 Sum_probs=109.5
Q ss_pred hhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccch
Q 045877 417 VEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIEST 496 (801)
Q Consensus 417 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 496 (801)
..+.++++|+.|++++|.|.... .+..+++|+.|.+.+|.+..+.+ |.++++|++|+|++|.++.
T Consensus 40 ~~~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~----------- 104 (291)
T 1h6t_A 40 VTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD----------- 104 (291)
T ss_dssp ECHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-----------
T ss_pred cchhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-----------
Confidence 44566777777777777776652 25566677777777777766654 6677777777777776632
Q ss_pred hhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCC
Q 045877 497 DYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSL 576 (801)
Q Consensus 497 ~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~ 576 (801)
+ ..+..+++|++|+|++|.+. .+ ..+..+++|++|+|++|.+.+. ..+..+++|++|++++|.+.+..+ +..
T Consensus 105 -~-~~l~~l~~L~~L~L~~n~i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~ 176 (291)
T 1h6t_A 105 -L-SSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG 176 (291)
T ss_dssp -G-GGGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred -C-hhhccCCCCCEEECCCCcCC-CC-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcC
Confidence 2 23666777777777776433 33 3466677777777777654443 456667777777777776654433 666
Q ss_pred CCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccc
Q 045877 577 LSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKF 625 (801)
Q Consensus 577 L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~ 625 (801)
+++|+.|+ +++|. .... ..+..+++|+.|++++|.+..
T Consensus 177 l~~L~~L~---L~~N~-------i~~l-~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 177 LTKLQNLY---LSKNH-------ISDL-RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CTTCCEEE---CCSSC-------CCBC-GGGTTCTTCSEEEEEEEEEEC
T ss_pred CCccCEEE---CCCCc-------CCCC-hhhccCCCCCEEECcCCcccC
Confidence 66666666 66665 2222 346666666666666666544
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.68 E-value=5.9e-17 Score=185.93 Aligned_cols=194 Identities=20% Similarity=0.170 Sum_probs=145.9
Q ss_pred CCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCccccc
Q 045877 472 KIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIG 551 (801)
Q Consensus 472 ~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~ 551 (801)
+|+.|+|++|.+++ +|..+ .++|++|+|++|.+ ..+| ..+++|++|+|++|.+.+ +|. +.
T Consensus 60 ~L~~L~Ls~n~L~~------------lp~~l--~~~L~~L~Ls~N~l-~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~ 119 (571)
T 3cvr_A 60 QFSELQLNRLNLSS------------LPDNL--PPQITVLEITQNAL-ISLP---ELPASLEYLDACDNRLST-LPE-LP 119 (571)
T ss_dssp TCSEEECCSSCCSC------------CCSCC--CTTCSEEECCSSCC-SCCC---CCCTTCCEEECCSSCCSC-CCC-CC
T ss_pred CccEEEeCCCCCCc------------cCHhH--cCCCCEEECcCCCC-cccc---cccCCCCEEEccCCCCCC-cch-hh
Confidence 88999999998853 33333 36899999999854 4777 557899999999986665 777 66
Q ss_pred CCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChh
Q 045877 552 KLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLS 631 (801)
Q Consensus 552 ~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~ 631 (801)
+ +|++|+|++|.+.+ +|. .+++|+.|+ +++|. +..++. .+++|++|+|++|.+.... .
T Consensus 120 ~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~---Ls~N~-------l~~lp~---~l~~L~~L~Ls~N~L~~lp---~ 177 (571)
T 3cvr_A 120 A--SLKHLDVDNNQLTM-LPE---LPALLEYIN---ADNNQ-------LTMLPE---LPTSLEVLSVRNNQLTFLP---E 177 (571)
T ss_dssp T--TCCEEECCSSCCSC-CCC---CCTTCCEEE---CCSSC-------CSCCCC---CCTTCCEEECCSSCCSCCC---C
T ss_pred c--CCCEEECCCCcCCC-CCC---cCccccEEe---CCCCc-------cCcCCC---cCCCcCEEECCCCCCCCcc---h
Confidence 5 89999999998876 666 678888888 88887 444444 5789999999999988743 3
Q ss_pred hhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCC
Q 045877 632 TVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYS 711 (801)
Q Consensus 632 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~ 711 (801)
|. ++|+.|+|++|.++.... + .......+..|+.|+|++|.+..+|.+++ .
T Consensus 178 -l~--~~L~~L~Ls~N~L~~lp~--~----------------------~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~--~ 228 (571)
T 3cvr_A 178 -LP--ESLEALDVSTNLLESLPA--V----------------------PVRNHHSEETEIFFRCRENRITHIPENIL--S 228 (571)
T ss_dssp -CC--TTCCEEECCSSCCSSCCC--C----------------------C--------CCEEEECCSSCCCCCCGGGG--G
T ss_pred -hh--CCCCEEECcCCCCCchhh--H----------------------HHhhhcccccceEEecCCCcceecCHHHh--c
Confidence 44 899999999999884332 1 00000112345999999999999999988 7
Q ss_pred CCCccEEEeeCCcCCCCCCCccccc
Q 045877 712 FKNLKNLYIRGGRLNSLEGSEWETV 736 (801)
Q Consensus 712 l~~L~~L~L~~n~l~~~~~~~f~~L 736 (801)
+++|+.|+|++|.|++..+..+.+|
T Consensus 229 l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 229 LDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp SCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 9999999999999988776555333
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=2.3e-16 Score=171.47 Aligned_cols=238 Identities=13% Similarity=0.007 Sum_probs=145.8
Q ss_pred cccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhh-hHhhcCC
Q 045877 427 NFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDY-LKGLKNM 505 (801)
Q Consensus 427 ~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l-p~~l~~l 505 (801)
.++.++++++.++... ..+++.|.+.+|+|..+++++|.++++|++|+|++|++.. .+ +..|.++
T Consensus 13 ~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~-----------~i~~~~f~~L 78 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE-----------VIEADVFSNL 78 (350)
T ss_dssp EEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC-----------EECTTSBCSC
T ss_pred EEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC-----------ccChhHhhcc
Confidence 3455666666554332 2456777777777777777777788888888888777632 12 2346677
Q ss_pred cCCce-EeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCC-ccccCCCcccCCCC-cccc
Q 045877 506 KELRL-LSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISEC-FLLDGIPKKLSLLS-KLQV 582 (801)
Q Consensus 506 ~~L~~-L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n-~l~~~~p~~~~~L~-~L~~ 582 (801)
++|++ +.+.+|.+....|..|..+++|++|++++|.+....+..+....++.+|++.++ .+....+..|..+. .++.
T Consensus 79 ~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~ 158 (350)
T 4ay9_X 79 PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158 (350)
T ss_dssp TTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEE
T ss_pred hhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhh
Confidence 77665 445555554444566777788888888777665555555566667777777654 33333333455543 4666
Q ss_pred cccccccCCcchhhhhhcccCcccccCCccCCeeEeec-ccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCC
Q 045877 583 LKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTINI-NSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQT 661 (801)
Q Consensus 583 L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~-n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 661 (801)
|+ +++|. +..++.......+|+.|++.+ |.+.... ...|.++++|+.|+|++|.++......
T Consensus 159 L~---L~~N~-------i~~i~~~~f~~~~L~~l~l~~~n~l~~i~--~~~f~~l~~L~~LdLs~N~l~~lp~~~----- 221 (350)
T 4ay9_X 159 LW---LNKNG-------IQEIHNSAFNGTQLDELNLSDNNNLEELP--NDVFHGASGPVILDISRTRIHSLPSYG----- 221 (350)
T ss_dssp EE---CCSSC-------CCEECTTSSTTEEEEEEECTTCTTCCCCC--TTTTTTEECCSEEECTTSCCCCCCSSS-----
T ss_pred hc---ccccc-------ccCCChhhccccchhHHhhccCCcccCCC--HHHhccCcccchhhcCCCCcCccChhh-----
Confidence 66 66666 444555555566777777764 4454443 456677777888888777776543211
Q ss_pred CccchhchhhhhcccccccccccccCCCccEEEccC-CCCCCCCcccCCCCCCCccEEEeeCC
Q 045877 662 GRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQC-FPDEKLPSWVHPYSFKNLKNLYIRGG 723 (801)
Q Consensus 662 ~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~-n~~~~lp~~l~~~~l~~L~~L~L~~n 723 (801)
..+|+.|.+.+ +.+..+|. +. .+++|+.+++.++
T Consensus 222 -------------------------~~~L~~L~~l~~~~l~~lP~-l~--~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 222 -------------------------LENLKKLRARSTYNLKKLPT-LE--KLVALMEASLTYP 256 (350)
T ss_dssp -------------------------CTTCCEEECTTCTTCCCCCC-TT--TCCSCCEEECSCH
T ss_pred -------------------------hccchHhhhccCCCcCcCCC-ch--hCcChhhCcCCCC
Confidence 24566666544 34556664 33 6777777777653
No 99
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.67 E-value=8.3e-18 Score=196.41 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=61.0
Q ss_pred hccccccccccch-hhcch-hhhhhccccCceeeecCCcccCCCChhhhc----cCCCCCEEEcCCcccCCCCCCccccc
Q 045877 421 KIKKLFNFSLSLE-EIENK-AKDCAMKRGRIETLFNVSEEFPEFKYDWFS----KLEKIKVLYLGRWQSTVDDIPHIEIE 494 (801)
Q Consensus 421 ~l~~L~~L~Ls~N-~l~~~-~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~----~l~~L~~L~Ls~n~l~~~~~~~~~~~ 494 (801)
.+++|++|+|++| .++.. .+..+..+++|+.|.+.+|.+.......+. .+++|+.|+|++|. .. +.
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~-------~~ 199 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SE-------VS 199 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SC-------CC
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-Cc-------CC
Confidence 4566666666666 44432 333334566666666666665544333332 45566777776664 00 00
Q ss_pred chhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCC
Q 045877 495 STDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRAC 540 (801)
Q Consensus 495 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n 540 (801)
...+...+..+++|++|+|++|...+.+|..+..+++|+.|+++.|
T Consensus 200 ~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 200 FSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred HHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 1223333445667777777766444456666666666666665543
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.66 E-value=2.8e-16 Score=157.36 Aligned_cols=178 Identities=16% Similarity=0.050 Sum_probs=115.6
Q ss_pred ccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcC
Q 045877 428 FSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKE 507 (801)
Q Consensus 428 L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~ 507 (801)
++.+.+.++.++... ..+++.|.+.+|.+..+++..|.++++|++|+|++|.++... +..|..+++
T Consensus 12 v~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------~~~~~~l~~ 77 (208)
T 2o6s_A 12 VECYSQGRTSVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP-----------NGVFNKLTS 77 (208)
T ss_dssp EECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-----------TTTTTTCTT
T ss_pred EEecCCCccCCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC-----------hhhcCCCCC
Confidence 445555554443322 246777777777777777777777777777777777774321 334567777
Q ss_pred CceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCccccccccc
Q 045877 508 LRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFV 587 (801)
Q Consensus 508 L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~ 587 (801)
|++|+|++|.+.+..+..++++++|++|+|++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 78 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~--- 154 (208)
T 2o6s_A 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW--- 154 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE---
T ss_pred cCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE---
Confidence 77777777755544445567777777777777766655555567777777888777777655555567777777777
Q ss_pred ccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhccc
Q 045877 588 ISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFK 637 (801)
Q Consensus 588 l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~ 637 (801)
+++|. ..+.+++|+.|+++.|.+.+.. +..++.++
T Consensus 155 l~~N~-------------~~~~~~~l~~L~~~~n~~~g~i--p~~~~~l~ 189 (208)
T 2o6s_A 155 LHDNP-------------WDCTCPGIRYLSEWINKHSGVV--RNSAGSVA 189 (208)
T ss_dssp CCSCC-------------BCCCTTTTHHHHHHHHHCTTTB--BCTTSSBC
T ss_pred ecCCC-------------eecCCCCHHHHHHHHHhCCcee--eccCcccc
Confidence 66665 1234566777777777777665 45555443
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=4.9e-16 Score=164.21 Aligned_cols=194 Identities=20% Similarity=0.186 Sum_probs=158.8
Q ss_pred hccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhH
Q 045877 421 KIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLK 500 (801)
Q Consensus 421 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~ 500 (801)
.+..+..+.+..+.+...... ..+.+|+.|.+.+|.+..+. .+..+++|++|+|++|.++. ++.
T Consensus 22 ~l~~~~~~~l~~~~~~~~~~~--~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~------------~~~ 85 (291)
T 1h6t_A 22 AFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD------------IKP 85 (291)
T ss_dssp HHHHHHHHHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC------------CGG
T ss_pred HHHHHHHHHhcCCCcccccch--hhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCC------------Ccc
Confidence 345556667777777665433 36789999999999998874 48999999999999999953 333
Q ss_pred hhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcc
Q 045877 501 GLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL 580 (801)
Q Consensus 501 ~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L 580 (801)
+..+++|++|+|++|.+ ..+|. ++.+++|++|+|++|.+.+ + ..+..+++|++|++++|.+.+. ..+..+++|
T Consensus 86 -l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 158 (291)
T 1h6t_A 86 -LANLKNLGWLFLDENKV-KDLSS-LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL 158 (291)
T ss_dssp -GTTCTTCCEEECCSSCC-CCGGG-GTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred -cccCCCCCEEECCCCcC-CCChh-hccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCC
Confidence 89999999999999854 44554 9999999999999997655 4 4689999999999999998764 578999999
Q ss_pred cccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCC
Q 045877 581 QVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSAN 652 (801)
Q Consensus 581 ~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 652 (801)
++|+ +++|. ....+. +..+++|+.|++++|.+... ..+..+++|+.|++++|.+...
T Consensus 159 ~~L~---L~~N~-------l~~~~~-l~~l~~L~~L~L~~N~i~~l----~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 159 DTLS---LEDNQ-------ISDIVP-LAGLTKLQNLYLSKNHISDL----RALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp SEEE---CCSSC-------CCCCGG-GTTCTTCCEEECCSSCCCBC----GGGTTCTTCSEEEEEEEEEECC
T ss_pred CEEE---ccCCc-------cccchh-hcCCCccCEEECCCCcCCCC----hhhccCCCCCEEECcCCcccCC
Confidence 9999 88888 444444 89999999999999998764 3589999999999999988753
No 102
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=3.8e-18 Score=199.31 Aligned_cols=353 Identities=14% Similarity=0.035 Sum_probs=213.0
Q ss_pred hhhccccccccccchhhcchhhhhhc-cccCceeeecCCc-ccCCC-ChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 419 FEKIKKLFNFSLSLEEIENKAKDCAM-KRGRIETLFNVSE-EFPEF-KYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 419 ~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~L~~L~l~~n-~i~~~-~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
+..+++|+.|+|++|.+++.....+. .+++|+.|.+.++ .+... .+..+.++++|++|+|++|.++... .
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~-------~ 173 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS-------G 173 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCC-------G
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc-------h
Confidence 35678999999999999988777775 6889999999887 44432 2345568999999999999875432 1
Q ss_pred hhhhHhhcCCcCCceEeecCCC--CC-ccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCcc------
Q 045877 496 TDYLKGLKNMKELRLLSLQGMS--GI-QELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFL------ 566 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~--~~-~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l------ 566 (801)
..++.....+++|++|+|++|. .. ..++..+.++++|++|+|++|...+.+|..+..+++|++|+++.+..
T Consensus 174 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 253 (594)
T 2p1m_B 174 HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV 253 (594)
T ss_dssp GGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHH
T ss_pred HHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhh
Confidence 2344444578899999999985 11 12223345689999999999865556788888999999999766531
Q ss_pred ccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeec
Q 045877 567 LDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSW 646 (801)
Q Consensus 567 ~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~ 646 (801)
...++..+.++++|+.|.. +.... ...++..+..+++|++|+|++|.+.... ....+..+++|+.|++++
T Consensus 254 ~~~l~~~l~~~~~L~~Ls~--~~~~~-------~~~l~~~~~~~~~L~~L~L~~~~l~~~~-l~~~~~~~~~L~~L~l~~ 323 (594)
T 2p1m_B 254 YSGLSVALSGCKELRCLSG--FWDAV-------PAYLPAVYSVCSRLTTLNLSYATVQSYD-LVKLLCQCPKLQRLWVLD 323 (594)
T ss_dssp HHHHHHHHHTCTTCCEEEC--CBTCC-------GGGGGGGHHHHTTCCEEECTTCCCCHHH-HHHHHTTCTTCCEEEEEG
T ss_pred HHHHHHHHhcCCCcccccC--Ccccc-------hhhHHHHHHhhCCCCEEEccCCCCCHHH-HHHHHhcCCCcCEEeCcC
Confidence 1123345666667766621 22222 1223333445667777777777644322 122245666777777766
Q ss_pred cCCCCCCCCCCCCCCCccchhchhhhhccc---------c-----cccccccccCCCccEEEccCCCCCCCC-cccCCCC
Q 045877 647 GGGSANKSTKPEPQTGRKDNFFIKTLTKFR---------T-----RVTERSQHVESKLEKLDFQCFPDEKLP-SWVHPYS 711 (801)
Q Consensus 647 n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~---------~-----~l~~~~~~~~~~L~~L~L~~n~~~~lp-~~l~~~~ 711 (801)
| +.......+ ......++.|+... + .+..+... .++|+.|.++++.++... ..+. ..
T Consensus 324 ~-~~~~~l~~l-----~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~-~~~L~~L~~~~~~l~~~~~~~l~-~~ 395 (594)
T 2p1m_B 324 Y-IEDAGLEVL-----ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG-CPKLESVLYFCRQMTNAALITIA-RN 395 (594)
T ss_dssp G-GHHHHHHHH-----HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHH-CTTCCEEEEEESCCCHHHHHHHH-HH
T ss_pred c-cCHHHHHHH-----HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHh-chhHHHHHHhcCCcCHHHHHHHH-hh
Confidence 5 221000000 00011122221100 0 11111111 368999988777654211 1121 25
Q ss_pred CCCccEEEee--C----CcCCCCCC--------Ccccccceecc----------------cccccccccccccc------
Q 045877 712 FKNLKNLYIR--G----GRLNSLEG--------SEWETVKVLRL----------------KYLNELKIDWKGLQ------ 755 (801)
Q Consensus 712 l~~L~~L~L~--~----n~l~~~~~--------~~f~~L~~l~L----------------~~L~~L~l~~n~l~------ 755 (801)
+++|+.|+|+ + +.++..+. ..+++|+.+++ ++|+.|++++|.++
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~ 475 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH 475 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHH
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHH
Confidence 8999999999 4 45664432 23456666654 44677777777764
Q ss_pred --CcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCccc
Q 045877 756 --ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQH 798 (801)
Q Consensus 756 --~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~ 798 (801)
..+++|+.|++.+|+. ...... ..+..+++|+.|++++|+.
T Consensus 476 l~~~~~~L~~L~L~~n~~-~~~~~~-~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 476 VLSGCDSLRKLEIRDCPF-GDKALL-ANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHCTTCCEEEEESCSC-CHHHHH-HTGGGGGGSSEEEEESSCC
T ss_pred HHhcCCCcCEEECcCCCC-cHHHHH-HHHHhCCCCCEEeeeCCCC
Confidence 2367788888877753 221110 0224578999999999876
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=8.4e-16 Score=178.24 Aligned_cols=178 Identities=21% Similarity=0.228 Sum_probs=141.5
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...+..|+.|+.|++++|.|..+. .+..+++|+.|.+.+|.+..+++ |.++++|+.|+|++|.++.
T Consensus 36 ~~~~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~---------- 101 (605)
T 1m9s_A 36 AVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD---------- 101 (605)
T ss_dssp EECHHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC----------
T ss_pred ccchhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC----------
Confidence 345678888999999999988764 47788899999999998888766 8889999999999998843
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccC
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLS 575 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~ 575 (801)
+ ..+..+++|++|+|++|.+. .++ .+..|++|+.|+|++|.+.+. ..+..|++|++|+|++|.+.+..| +.
T Consensus 102 --l-~~l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~ 172 (605)
T 1m9s_A 102 --L-SSLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA 172 (605)
T ss_dssp --C-TTSTTCTTCCEEECTTSCCC-CCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GT
T ss_pred --C-hhhccCCCCCEEEecCCCCC-CCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hc
Confidence 2 25788899999999988554 444 588899999999999866554 568889999999999998876655 88
Q ss_pred CCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccc
Q 045877 576 LLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQT 627 (801)
Q Consensus 576 ~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~ 627 (801)
.+++|+.|+ +++|. +..+ ..+..|++|+.|+|++|.+....
T Consensus 173 ~l~~L~~L~---Ls~N~-------i~~l-~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 173 GLTKLQNLY---LSKNH-------ISDL-RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp TCTTCCEEE---CCSSC-------CCBC-GGGTTCTTCSEEECCSEEEECCC
T ss_pred cCCCCCEEE---CcCCC-------CCCC-hHHccCCCCCEEEccCCcCcCCc
Confidence 888888888 88877 3333 56888889999999988876543
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.63 E-value=1e-15 Score=175.73 Aligned_cols=185 Identities=14% Similarity=0.092 Sum_probs=149.7
Q ss_pred hhhhcc-----ccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCccc
Q 045877 418 EFEKIK-----KLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIE 492 (801)
Q Consensus 418 ~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~ 492 (801)
.+..++ +|+.|+|++|+|+++++..+ ++|+.|.+.+|.|..++ ..+++|++|+|++|.+++
T Consensus 49 ~~~~l~~C~~~~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~------- 114 (571)
T 3cvr_A 49 AVSLLKECLINQFSELQLNRLNLSSLPDNLP---PQITVLEITQNALISLP----ELPASLEYLDACDNRLST------- 114 (571)
T ss_dssp HHHHHHHHHHTTCSEEECCSSCCSCCCSCCC---TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-------
T ss_pred hhhhccccccCCccEEEeCCCCCCccCHhHc---CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC-------
Confidence 455555 89999999999998554442 78999999999999776 457899999999999964
Q ss_pred ccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCc
Q 045877 493 IESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPK 572 (801)
Q Consensus 493 ~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~ 572 (801)
+|. +.. +|++|+|++|.+.+ +|. .+++|++|+|++|.+.+ +|. .+++|++|+|++|.+.+ +|.
T Consensus 115 -----ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~ 177 (571)
T 3cvr_A 115 -----LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE 177 (571)
T ss_dssp -----CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC
T ss_pred -----cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch
Confidence 334 444 99999999986555 777 68999999999997655 776 67899999999999876 777
Q ss_pred ccCCCCcccccccccccCCcchhhhhhcccCcccccCCccC-------CeeEeecccccccccChhhhhcccCCcEEEee
Q 045877 573 KLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHL-------RKLTININSEKFQTENLSTVLAFKRLLQLKVS 645 (801)
Q Consensus 573 ~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L-------~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~ 645 (801)
|. ++|+.|+ +++|. +..++. +.. +| +.|+|++|.+... +..+..+++|+.|+|+
T Consensus 178 -l~--~~L~~L~---Ls~N~-------L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~l---p~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 178 -LP--ESLEALD---VSTNL-------LESLPA-VPV--RNHHSEETEIFFRCRENRITHI---PENILSLDPTCTIILE 238 (571)
T ss_dssp -CC--TTCCEEE---CCSSC-------CSSCCC-CC----------CCEEEECCSSCCCCC---CGGGGGSCTTEEEECC
T ss_pred -hh--CCCCEEE---CcCCC-------CCchhh-HHH--hhhcccccceEEecCCCcceec---CHHHhcCCCCCEEEee
Confidence 66 8999999 89998 555565 554 67 9999999999864 5677789999999999
Q ss_pred ccCCCCC
Q 045877 646 WGGGSAN 652 (801)
Q Consensus 646 ~n~l~~~ 652 (801)
+|.+++.
T Consensus 239 ~N~l~~~ 245 (571)
T 3cvr_A 239 DNPLSSR 245 (571)
T ss_dssp SSSCCHH
T ss_pred CCcCCCc
Confidence 9998864
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=1.4e-15 Score=176.42 Aligned_cols=196 Identities=19% Similarity=0.181 Sum_probs=162.9
Q ss_pred hhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhh
Q 045877 420 EKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYL 499 (801)
Q Consensus 420 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp 499 (801)
..+..+..+.+..+.+..+.+ +..+.+|+.|.+.+|.+..++ .|..|++|+.|+|++|.++. ++
T Consensus 18 ~~l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~------------~~ 81 (605)
T 1m9s_A 18 DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD------------IK 81 (605)
T ss_dssp HHHHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCC------------CG
T ss_pred HHHHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCC------------Ch
Confidence 345566777888888877655 346789999999999998875 58999999999999999853 23
Q ss_pred HhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCc
Q 045877 500 KGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSK 579 (801)
Q Consensus 500 ~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~ 579 (801)
. +..+++|++|+|++|.+ ..+| .++.|++|++|+|++|.+.+ + ..+..|++|+.|+|++|.+.+. ..+..+++
T Consensus 82 ~-l~~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~ 154 (605)
T 1m9s_A 82 P-LTNLKNLGWLFLDENKI-KDLS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTK 154 (605)
T ss_dssp G-GGGCTTCCEEECCSSCC-CCCT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTT
T ss_pred h-hccCCCCCEEECcCCCC-CCCh-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCC
Confidence 3 88999999999999855 4455 69999999999999997665 4 4589999999999999998765 57899999
Q ss_pred ccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCC
Q 045877 580 LQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANK 653 (801)
Q Consensus 580 L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 653 (801)
|+.|+ +++|. +...+. +..+++|+.|+|++|.+... ..+..+++|+.|+|++|.+.+..
T Consensus 155 L~~L~---Ls~N~-------l~~~~~-l~~l~~L~~L~Ls~N~i~~l----~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 155 LDTLS---LEDNQ-------ISDIVP-LAGLTKLQNLYLSKNHISDL----RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CSEEE---CCSSC-------CCCCGG-GTTCTTCCEEECCSSCCCBC----GGGTTCTTCSEEECCSEEEECCC
T ss_pred CCEEE---CcCCc-------CCCchh-hccCCCCCEEECcCCCCCCC----hHHccCCCCCEEEccCCcCcCCc
Confidence 99999 88888 444444 89999999999999998764 46899999999999999887653
No 106
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.61 E-value=1.7e-16 Score=186.42 Aligned_cols=156 Identities=11% Similarity=0.152 Sum_probs=120.7
Q ss_pred CCCcceeecCcchhhHhhhhccceeeCC------CCChhH---HHHHHHHhhhcccccccccccchhhhhHHHHHhhhcc
Q 045877 91 ISSSEQIKKNEEKDASEADQSVQVHPLN------QLDHDL---IYMQYALKRLKGFEGTFGKSIQDLKDDLELVLTSQAT 161 (801)
Q Consensus 91 ~~s~~~vttr~~~~~~~~~~~~~~~~l~------~l~~~~---lf~~~af~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (801)
.|++++||||.+.++..+. ...+|+|+ .|+.+| ||+++ ++...
T Consensus 264 pGSRILVTTRd~~Va~~l~-g~~vy~LeL~d~dL~LS~eEA~eLF~~~-~g~~~-------------------------- 315 (1221)
T 1vt4_I 264 LSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRP-------------------------- 315 (1221)
T ss_dssp SSCCEEEECSCSHHHHHHH-HHSSCEEEECSSSSCCCHHHHHHHHHHH-HCCCT--------------------------
T ss_pred CCeEEEEeccChHHHHhcC-CCeEEEecCccccCCcCHHHHHHHHHHH-cCCCH--------------------------
Confidence 6899999999999987554 34567888 899998 77665 22111
Q ss_pred CCccchhhhhhhHHHHHHHHHHHHHhCCCCCcccCCCCC----c--hhHHhhhccCCCCCCCCccccccccchhHHHHHH
Q 045877 162 GSKSVQEVETLQDEIRRISQKFLNLKSKIPPVNSSSSDD----S--DAQQRRRINQSKDLPNMADKTRFKEHDFFIEFKK 235 (801)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~~l~~----~--~~~~W~~~l~~~~~~~~~~~~~~~~~~i~~~L~~ 235 (801)
.++..+| |+|+|||| +++|+ + +.++|+.. + ...|..+|++
T Consensus 316 ---------------eeL~~eI---CgGLPLAL-kLaGs~Lr~k~~s~eeW~~~-------~--------~~~I~aaLel 361 (1221)
T 1vt4_I 316 ---------------QDLPREV---LTTNPRRL-SIIAESIRDGLATWDNWKHV-------N--------CDKLTTIIES 361 (1221)
T ss_dssp ---------------TTHHHHH---CCCCHHHH-HHHHHHHHHSCSSHHHHHHC-------S--------CHHHHHHHHH
T ss_pred ---------------HHHHHHH---hCCCHHHH-HHHHHHHhCCCCCHHHHhcC-------C--------hhHHHHHHHH
Confidence 1122333 99999996 33332 2 67788764 1 1359999999
Q ss_pred hhhccC-CC-ccccceecccCCCceechhhHHHHHHHcCCCcccccCCCChHHHHHHHHHHHHhcCcccccccccCCccc
Q 045877 236 IFQSLG-ND-QSCLLCFAVFPENAVIKKRLLVNWWIGEGFLKERIQGENSAEKAADKLLREFEEKGFILPVDKKHRGVAN 313 (801)
Q Consensus 236 SYd~L~-~~-K~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~~~~~~~L~~r~ll~~~~~~~~~~~~ 313 (801)
||+.|+ +. |+||+|||+||+++.|.++.++.+|+++| ++.++.+|++|+++|||+... ...
T Consensus 362 SYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------------eedAe~~L~eLvdRSLLq~d~-----~~~ 424 (1221)
T 1vt4_I 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------------KSDVMVVVNKLHKYSLVEKQP-----KES 424 (1221)
T ss_dssp HHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------------SHHHHHHHHHHHTSSSSSBCS-----SSS
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------------HHHHHHHHHHHHhhCCEEEeC-----CCC
Confidence 999999 99 99999999999999999999999999887 134888999999999999842 124
Q ss_pred eEEechhHHHHH
Q 045877 314 SFRMSPLVRSAV 325 (801)
Q Consensus 314 ~~~mHdlv~dl~ 325 (801)
+|+|||++++++
T Consensus 425 rYrMHDLllELr 436 (1221)
T 1vt4_I 425 TISIPSIYLELK 436 (1221)
T ss_dssp EEBCCCHHHHHH
T ss_pred EEEehHHHHHHh
Confidence 799999999966
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=1.6e-15 Score=150.48 Aligned_cols=155 Identities=22% Similarity=0.253 Sum_probs=100.2
Q ss_pred ccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCc
Q 045877 468 SKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLP 547 (801)
Q Consensus 468 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp 547 (801)
..+++|+.|+|++|.++ .++ .+..+++|++|++++| .+..+ ..+..+++|++|++++|.+.+..+
T Consensus 41 ~~l~~L~~L~l~~n~i~------------~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~ 105 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT------------DLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKI 105 (197)
T ss_dssp HHHHTCCEEEEESSCCS------------CCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGS
T ss_pred hhcCCccEEeccCCCcc------------ChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccC
Confidence 45566777777777663 233 4666677777777776 33333 356667777777777776665566
Q ss_pred ccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccc
Q 045877 548 DEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQT 627 (801)
Q Consensus 548 ~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~ 627 (801)
..++.+++|++|++++|.+.+..|..++.+++|++|+ +++|. .......+..+++|+.|++++|.+...
T Consensus 106 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~---L~~n~-------~i~~~~~l~~l~~L~~L~l~~n~i~~~- 174 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID---LSYNG-------AITDIMPLKTLPELKSLNIQFDGVHDY- 174 (197)
T ss_dssp CCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE---CCSCT-------BCCCCGGGGGCSSCCEEECTTBCCCCC-
T ss_pred hhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE---ccCCC-------CccccHhhcCCCCCCEEECCCCCCcCh-
Confidence 6677777777777777776666666677777777776 55553 112223577788888888888877653
Q ss_pred cChhhhhcccCCcEEEeeccCCCC
Q 045877 628 ENLSTVLAFKRLLQLKVSWGGGSA 651 (801)
Q Consensus 628 ~~~~~l~~l~~L~~L~L~~n~l~~ 651 (801)
..+..+++|+.|++++|.+.+
T Consensus 175 ---~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 175 ---RGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ---TTGGGCSSCCEEEECBC----
T ss_pred ---HHhccCCCCCEEEeeCcccCC
Confidence 267778888888888887653
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=1.6e-15 Score=150.58 Aligned_cols=151 Identities=19% Similarity=0.179 Sum_probs=91.4
Q ss_pred CceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhc
Q 045877 448 RIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEIS 527 (801)
Q Consensus 448 ~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~ 527 (801)
+|+.|.+.+|.+..++ .+..+++|++|+|++|.++. +..+..+++|++|+|++|.+.+..|..++
T Consensus 45 ~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~-------------~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 109 (197)
T 4ezg_A 45 SLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN-------------YNPISGLSNLERLRIMGKDVTSDKIPNLS 109 (197)
T ss_dssp TCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC-------------CGGGTTCTTCCEEEEECTTCBGGGSCCCT
T ss_pred CccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc-------------chhhhcCCCCCEEEeECCccCcccChhhc
Confidence 3444444444444333 35666667777777765421 23566667777777777655555566666
Q ss_pred CCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccc
Q 045877 528 YLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDL 607 (801)
Q Consensus 528 ~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l 607 (801)
.+++|++|+|++|.+.+..|..++.+++|++|++++|...+.+| .+..+++|++|+ +++|. ....+ .+
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~---l~~n~-------i~~~~-~l 177 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLN---IQFDG-------VHDYR-GI 177 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEE---CTTBC-------CCCCT-TG
T ss_pred CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEE---CCCCC-------CcChH-Hh
Confidence 77777777777766665566666777777777777776334444 466666777776 66665 22222 66
Q ss_pred cCCccCCeeEeecccccc
Q 045877 608 EKLEHLRKLTININSEKF 625 (801)
Q Consensus 608 ~~L~~L~~L~L~~n~~~~ 625 (801)
..+++|+.|++++|++..
T Consensus 178 ~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 178 EDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GGCSSCCEEEECBC----
T ss_pred ccCCCCCEEEeeCcccCC
Confidence 777788888888887653
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=3e-15 Score=149.82 Aligned_cols=164 Identities=12% Similarity=0.012 Sum_probs=135.7
Q ss_pred ccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHh
Q 045877 422 IKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKG 501 (801)
Q Consensus 422 l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~ 501 (801)
.++|++|++++|+|+++.+..|..+++|+.|.+.+|.+..+++..|.++++|++|+|++|.++... +..
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------~~~ 95 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP-----------NGV 95 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------TTT
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC-----------HhH
Confidence 457999999999999999999999999999999999999999999999999999999999986321 345
Q ss_pred hcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCccc
Q 045877 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQ 581 (801)
Q Consensus 502 l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ 581 (801)
|..+++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+..+..+..+++|++|++++|.+.+ .+++|+
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~ 168 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIR 168 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTH
T ss_pred hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHH
Confidence 7899999999999997665555668999999999999998776666668999999999999997654 455778
Q ss_pred ccccccccCCcchhhhhhcccCcccccCCcc
Q 045877 582 VLKGFVISDHAEDDRRWKRWCSLKDLEKLEH 612 (801)
Q Consensus 582 ~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~ 612 (801)
.|+ +..|. ..+.+|..++.++.
T Consensus 169 ~L~---~~~n~------~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 169 YLS---EWINK------HSGVVRNSAGSVAP 190 (208)
T ss_dssp HHH---HHHHH------CTTTBBCTTSSBCT
T ss_pred HHH---HHHHh------CCceeeccCccccC
Confidence 877 55444 12356677776654
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=1.6e-16 Score=183.25 Aligned_cols=207 Identities=16% Similarity=0.094 Sum_probs=158.8
Q ss_pred hhhhccccccccccchhhcchhhhhhccccCceeeecCCcc-------------cCCCChhhhccCCCCCEEE-cCCccc
Q 045877 418 EFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEE-------------FPEFKYDWFSKLEKIKVLY-LGRWQS 483 (801)
Q Consensus 418 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~-------------i~~~~~~~f~~l~~L~~L~-Ls~n~l 483 (801)
++...++|+.|+|++|+|+ .+|..+..+++|+.|.+.+|. +.+..+..+.++++|+.|+ ++.|.+
T Consensus 344 d~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 344 DSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp CCSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred ccccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence 3467889999999999997 557888889999998886654 4556678889999999998 677655
Q ss_pred CCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccC
Q 045877 484 TVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISE 563 (801)
Q Consensus 484 ~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~ 563 (801)
... +.+.+....+. .+. ...|++|+|++|.+ ..+|. ++.|++|++|+|++|.+. .+|..|+.|++|++|+|++
T Consensus 423 ~~L--~~l~l~~n~i~-~l~-~~~L~~L~Ls~n~l-~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 495 (567)
T 1dce_A 423 DDL--RSKFLLENSVL-KME-YADVRVLHLAHKDL-TVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD 495 (567)
T ss_dssp HHH--HHHHHHHHHHH-HHH-HTTCSEEECTTSCC-SSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred chh--hhhhhhccccc-ccC-ccCceEEEecCCCC-CCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCC
Confidence 210 00000000111 111 12599999999855 45787 999999999999999665 8899999999999999999
Q ss_pred CccccCCCcccCCCCcccccccccccCCcchhhhhhcccC--cccccCCccCCeeEeecccccccccC-hhhhhcccCCc
Q 045877 564 CFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCS--LKDLEKLEHLRKLTININSEKFQTEN-LSTVLAFKRLL 640 (801)
Q Consensus 564 n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~--~~~l~~L~~L~~L~L~~n~~~~~~~~-~~~l~~l~~L~ 640 (801)
|.+++ +| .++.+++|+.|+ +++|. +... |..++.+++|+.|+|++|.+.+..+. ...+..+++|+
T Consensus 496 N~l~~-lp-~l~~l~~L~~L~---Ls~N~-------l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 496 NALEN-VD-GVANLPRLQELL---LCNNR-------LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563 (567)
T ss_dssp SCCCC-CG-GGTTCSSCCEEE---CCSSC-------CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred CCCCC-Cc-ccCCCCCCcEEE---CCCCC-------CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence 99886 77 899999999999 88888 4555 78999999999999999999877533 23455688999
Q ss_pred EEEe
Q 045877 641 QLKV 644 (801)
Q Consensus 641 ~L~L 644 (801)
.|++
T Consensus 564 ~L~l 567 (567)
T 1dce_A 564 SILT 567 (567)
T ss_dssp EEEC
T ss_pred ccCC
Confidence 9864
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.59 E-value=3.7e-15 Score=150.64 Aligned_cols=144 Identities=16% Similarity=0.083 Sum_probs=76.4
Q ss_pred cccccchhhcchhhhhhccccCceeeecCCcccCCCC-hhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCC
Q 045877 427 NFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFK-YDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNM 505 (801)
Q Consensus 427 ~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l 505 (801)
.+++++|.++.++... ...++.|.+.+|.+..+. ...|.++++|++|+|++|.++.. .+..|..+
T Consensus 15 ~l~~s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-----------~~~~~~~l 80 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-----------EEGAFEGA 80 (220)
T ss_dssp EEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-----------CTTTTTTC
T ss_pred EeEeCCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-----------CHHHhCCC
Confidence 4666666665543222 123445555556555553 24455566666666666655321 12345555
Q ss_pred cCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccc
Q 045877 506 KELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLK 584 (801)
Q Consensus 506 ~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~ 584 (801)
++|++|+|++|.+.+..+..|.++++|++|+|++|.+.+..|..|..+++|++|+|++|.+.+..|..|..+++|+.|+
T Consensus 81 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 5666666665554444444555556666666665555555555555555566666655555544444454444444444
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=4.1e-15 Score=150.31 Aligned_cols=144 Identities=17% Similarity=0.076 Sum_probs=79.5
Q ss_pred cccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCc
Q 045877 427 NFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMK 506 (801)
Q Consensus 427 ~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~ 506 (801)
.+++++|.++.++.... ..++.|.+.+|.|..+++..|.++++|++|+|++|.++. ..|..|.+++
T Consensus 15 ~v~c~~~~l~~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~-----------~~~~~~~~l~ 80 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-----------LAPDAFQGLR 80 (220)
T ss_dssp EEECTTSCCSSCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE-----------ECTTTTTTCS
T ss_pred EEEcCCCCcCcCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC-----------cCHHHhhCCc
Confidence 45555555555433221 355666666666666655566666666666666666532 1245556666
Q ss_pred CCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccc
Q 045877 507 ELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLK 584 (801)
Q Consensus 507 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~ 584 (801)
+|++|+|++|.+....+..|.++++|++|+|++|.+.+..|..|..+++|++|+|++|.+.+..+..|..+++|+.|+
T Consensus 81 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 81 SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 666666666543332223345566666666666655555555566666666666666665544444455555555554
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=1.1e-14 Score=148.19 Aligned_cols=119 Identities=20% Similarity=0.085 Sum_probs=56.1
Q ss_pred eeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCC
Q 045877 451 TLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLT 530 (801)
Q Consensus 451 ~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~ 530 (801)
.+...++.+..++.... ++|++|+|++|.+++. .+..|..+++|++|+|++|.+....+..|..++
T Consensus 23 ~v~c~~~~l~~ip~~~~---~~L~~L~Ls~n~i~~~-----------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 88 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP---TNAQILYLHDNQITKL-----------EPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88 (229)
T ss_dssp EEECTTSCCSSCCSCCC---TTCSEEECCSSCCCCC-----------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred EeEccCCCcCccCCCCC---CCCCEEEcCCCccCcc-----------CHHHhhCccCCcEEECCCCCCCCcChhhcccCC
Confidence 34444555554443222 4555555555555321 134455555555555555543222223345555
Q ss_pred CCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccc
Q 045877 531 SLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLK 584 (801)
Q Consensus 531 ~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~ 584 (801)
+|++|+|++|.+.+..+..|..+++|++|+|++|.+. .+|..+..+++|++|+
T Consensus 89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 141 (229)
T 3e6j_A 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEE
T ss_pred CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEE
Confidence 5555555555444433334455555555555555543 3444444444444444
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.57 E-value=5.9e-15 Score=161.04 Aligned_cols=178 Identities=17% Similarity=0.092 Sum_probs=88.0
Q ss_pred cccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhc-cCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCC
Q 045877 427 NFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFS-KLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNM 505 (801)
Q Consensus 427 ~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l 505 (801)
.+++++|+|+.++.... ..++.|++.+|.|..+.+..|. ++++|+.|+|++|+++.. .+..|..+
T Consensus 22 ~l~c~~~~l~~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-----------~~~~~~~l 87 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-----------SSEAFVPV 87 (361)
T ss_dssp EEECCSSCCSSCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-----------CTTTTTTC
T ss_pred EEEeCCCCcCccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-----------ChhhccCC
Confidence 45666666555432221 2344555555555555555554 555555555555555321 12345555
Q ss_pred cCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCccccccc
Q 045877 506 KELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKG 585 (801)
Q Consensus 506 ~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~ 585 (801)
++|++|+|++|.+....+..|..+++|++|+|++|.+....|..|..+++|++|+|++|.+....+..|.
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~---------- 157 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK---------- 157 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----------
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhc----------
Confidence 5555555555543333333455555555555555544444445555555555555555554321111110
Q ss_pred ccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccC--CcEEEeeccCCC
Q 045877 586 FVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKR--LLQLKVSWGGGS 650 (801)
Q Consensus 586 ~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~--L~~L~L~~n~l~ 650 (801)
.+..+++|+.|+|++|.+.... ...+..++. |+.|+|++|.+.
T Consensus 158 --------------------~~~~l~~L~~L~L~~N~l~~l~--~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 158 --------------------DGNKLPKLMLLDLSSNKLKKLP--LTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ------------------------CTTCCEEECCSSCCCCCC--HHHHHHSCHHHHTTEECCSSCEE
T ss_pred --------------------CcccCCcCCEEECCCCCCCccC--HHHhhhccHhhcceEEecCCCcc
Confidence 0134566666666666665544 445555554 356666666554
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=7.9e-15 Score=152.50 Aligned_cols=169 Identities=18% Similarity=0.155 Sum_probs=91.1
Q ss_pred hccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhH
Q 045877 421 KIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLK 500 (801)
Q Consensus 421 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~ 500 (801)
.+..++.++++.|.++.+. .+..+++|+.|.+.+|.+..++ .|..+++|+.|+|++|.++. ++.
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~------------~~~ 80 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISD------------LSP 80 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC------------CGG
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCC------------Chh
Confidence 5666777777777776654 3455666666666666666553 45666666666666666632 222
Q ss_pred hhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcc
Q 045877 501 GLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL 580 (801)
Q Consensus 501 ~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L 580 (801)
+..+++|++|+|++|.+ ..+|. +.. .+|++|+|++|.+.+ ++ .+..+++|++|++++|++.+. + .+..+++|
T Consensus 81 -l~~l~~L~~L~L~~N~l-~~l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L 152 (263)
T 1xeu_A 81 -LKDLTKLEELSVNRNRL-KNLNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKL 152 (263)
T ss_dssp -GTTCSSCCEEECCSSCC-SCCTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTC
T ss_pred -hccCCCCCEEECCCCcc-CCcCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCC
Confidence 56666666666666533 33443 222 566666666664433 22 355666666666666655432 2 34444455
Q ss_pred cccccccccCCcchhhhhhcccCcccccCCccCCeeEeeccccc
Q 045877 581 QVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEK 624 (801)
Q Consensus 581 ~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~ 624 (801)
+.|+ +++|. .... ..+..+++|+.|++++|.+.
T Consensus 153 ~~L~---L~~N~-------i~~~-~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 153 EVLD---LHGNE-------ITNT-GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CEEE---CTTSC-------CCBC-TTSTTCCCCCEEEEEEEEEE
T ss_pred CEEE---CCCCc-------Ccch-HHhccCCCCCEEeCCCCccc
Confidence 5544 44444 1111 33444444455555444443
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=9.5e-15 Score=147.59 Aligned_cols=134 Identities=13% Similarity=0.090 Sum_probs=121.9
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
++|+.|+|++|+|+++.+..|..+++|+.|.+.+|.+..+.+..|.++++|++|+|++|.++... +..|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-----------~~~f 100 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP-----------KSLF 100 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCC-----------TTTT
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccC-----------HhHc
Confidence 57899999999999999999999999999999999999999999999999999999999996321 3457
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLL 567 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~ 567 (801)
..+++|++|+|++|.+.+..|..|..+++|++|+|++|.+.+..+..|..+++|++|+|++|.+.
T Consensus 101 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 88999999999999887777889999999999999999888777778999999999999999865
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=1.8e-14 Score=146.46 Aligned_cols=149 Identities=18% Similarity=0.148 Sum_probs=102.1
Q ss_pred ccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCC
Q 045877 426 FNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNM 505 (801)
Q Consensus 426 ~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l 505 (801)
+.++.+++++..++... .++|+.|.+.+|.+..+.+..|.++++|++|+|++|.++... +..|..+
T Consensus 22 ~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-----------~~~~~~l 87 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-----------VGVFDSL 87 (229)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------TTTTTTC
T ss_pred CEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-----------hhhcccC
Confidence 34666666666555433 266777888888888777777888888888888888774321 2446777
Q ss_pred cCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCccccccc
Q 045877 506 KELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKG 585 (801)
Q Consensus 506 ~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~ 585 (801)
++|++|+|++|.+.+..+..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|++.+..+..|..+++|+.|+
T Consensus 88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~- 165 (229)
T 3e6j_A 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY- 165 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE-
T ss_pred CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE-
Confidence 88888888887655444455677888888888887544 6777778888888888888877654444555666666655
Q ss_pred ccccCCc
Q 045877 586 FVISDHA 592 (801)
Q Consensus 586 ~~l~~n~ 592 (801)
+++|.
T Consensus 166 --l~~N~ 170 (229)
T 3e6j_A 166 --LFGNP 170 (229)
T ss_dssp --CTTSC
T ss_pred --eeCCC
Confidence 55554
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=146.78 Aligned_cols=135 Identities=14% Similarity=0.065 Sum_probs=122.3
Q ss_pred ccccccccchhhcchhh-hhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 424 KLFNFSLSLEEIENKAK-DCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 424 ~L~~L~Ls~N~l~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
.++.|+|++|+|+++.+ ..|..+++|+.|.+.+|.+..+++..|.++++|++|+|++|.++.. .+..|
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~ 101 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-----------QHKMF 101 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-----------CGGGG
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-----------CHhHh
Confidence 46899999999999865 5688999999999999999999999999999999999999999643 25668
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccC
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDG 569 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~ 569 (801)
..+++|++|+|++|.+.+..|..|..+++|++|+|++|.+.+..|..|..+++|++|++++|.+...
T Consensus 102 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 102 KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred cCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 9999999999999988877789999999999999999988888899999999999999999987654
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=6.9e-15 Score=160.49 Aligned_cols=155 Identities=16% Similarity=0.098 Sum_probs=130.4
Q ss_pred cccccccccchhhcchhhhhhc-cccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAM-KRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKG 501 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~ 501 (801)
..++.|+|++|+|+++.+..|. .+.+|+.|.+.+|.|..+.+..|.++++|+.|+|++|+++.. .+..
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-----------~~~~ 107 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-----------DEFL 107 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-----------CTTT
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-----------CHHH
Confidence 3588999999999999999998 999999999999999999999999999999999999998532 2456
Q ss_pred hcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCccc-c---cCCCCCCEEcccCCccccCCCcccCCC
Q 045877 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDE-I---GKLKSLTHLDISECFLLDGIPKKLSLL 577 (801)
Q Consensus 502 l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~-~---~~L~~L~~L~Ls~n~l~~~~p~~~~~L 577 (801)
|..+.+|++|+|++|.+....|..|.++++|++|+|++|.+.. +|.. | ..+++|++|+|++|.+....+..+..+
T Consensus 108 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 186 (361)
T 2xot_A 108 FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHS
T ss_pred hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhc
Confidence 8899999999999998777778899999999999999996655 5554 4 679999999999999876554566666
Q ss_pred Ccc--cccccccccCCc
Q 045877 578 SKL--QVLKGFVISDHA 592 (801)
Q Consensus 578 ~~L--~~L~~~~l~~n~ 592 (801)
+.+ +.|+ +++|.
T Consensus 187 ~~~~l~~l~---l~~N~ 200 (361)
T 2xot_A 187 PAWVKNGLY---LHNNP 200 (361)
T ss_dssp CHHHHTTEE---CCSSC
T ss_pred cHhhcceEE---ecCCC
Confidence 653 6666 77776
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=7.4e-15 Score=152.73 Aligned_cols=171 Identities=16% Similarity=0.092 Sum_probs=140.7
Q ss_pred cccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCch
Q 045877 445 KRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPS 524 (801)
Q Consensus 445 ~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~ 524 (801)
.+.++..+.+..+.+..+. .+..+++|++|++++|.++ .++ .+..+++|++|+|++|.+ ..++.
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~------------~l~-~l~~l~~L~~L~L~~N~i-~~~~~ 80 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ------------SLA-GMQFFTNLKELHLSHNQI-SDLSP 80 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC------------CCT-TGGGCTTCCEEECCSSCC-CCCGG
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc------------cch-HHhhCCCCCEEECCCCcc-CCChh
Confidence 3455667778888888765 5889999999999999984 334 688999999999999855 45555
Q ss_pred hhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCc
Q 045877 525 EISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSL 604 (801)
Q Consensus 525 ~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~ 604 (801)
++++++|++|+|++|.+.+ +|.. .. ++|++|++++|.+.+ ++ .+..+++|+.|+ +++|. ....
T Consensus 81 -l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~---Ls~N~-------i~~~- 143 (263)
T 1xeu_A 81 -LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILS---IRNNK-------LKSI- 143 (263)
T ss_dssp -GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEE---CTTSC-------CCBC-
T ss_pred -hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEE---CCCCc-------CCCC-
Confidence 9999999999999996654 5543 33 899999999999875 34 699999999999 88888 4434
Q ss_pred ccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCC
Q 045877 605 KDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSAN 652 (801)
Q Consensus 605 ~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 652 (801)
..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+.
T Consensus 144 ~~l~~l~~L~~L~L~~N~i~~~----~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 144 VMLGFLSKLEVLDLHGNEITNT----GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GGGGGCTTCCEEECTTSCCCBC----TTSTTCCCCCEEEEEEEEEECC
T ss_pred hHHccCCCCCEEECCCCcCcch----HHhccCCCCCEEeCCCCcccCC
Confidence 4789999999999999998765 5688899999999999988754
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=5.8e-15 Score=175.46 Aligned_cols=112 Identities=26% Similarity=0.260 Sum_probs=60.5
Q ss_pred ChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCC
Q 045877 463 KYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYN 542 (801)
Q Consensus 463 ~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~ 542 (801)
++..|..++.|++|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..|++|++|++|+|++|.+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~------------~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF------------NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp ------CCCCCCEEECTTSCCS------------CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred ChhhhccCCCCcEEECCCCCCC------------CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 3455666666666666666652 33444555666666666665433 5566666666666666666644
Q ss_pred CCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCc
Q 045877 543 LDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHA 592 (801)
Q Consensus 543 ~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~ 592 (801)
. .+|..|++|++|++|+|++|.+. .+|..|+.|++|++|+ +++|.
T Consensus 283 ~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~---L~~N~ 327 (727)
T 4b8c_D 283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG---VEGNP 327 (727)
T ss_dssp S-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE---CTTSC
T ss_pred C-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe---CCCCc
Confidence 3 55666666666666666666543 4455555555555555 44444
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.50 E-value=6.4e-15 Score=169.81 Aligned_cols=180 Identities=16% Similarity=0.111 Sum_probs=141.3
Q ss_pred chhhhhhhhccccccccccchh-------------hcchhhhhhccccCceeee-cCCcccCCCChhh-----hcc--CC
Q 045877 413 EQKAVEFEKIKKLFNFSLSLEE-------------IENKAKDCAMKRGRIETLF-NVSEEFPEFKYDW-----FSK--LE 471 (801)
Q Consensus 413 ~~~~~~~~~l~~L~~L~Ls~N~-------------l~~~~~~~~~~~~~L~~L~-l~~n~i~~~~~~~-----f~~--l~ 471 (801)
...+.+++.+++|+.|++++|. +.+..|..+..+++|+.|. +..|.+..+.... +.. ..
T Consensus 362 ~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~ 441 (567)
T 1dce_A 362 TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 441 (567)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCcc
Confidence 3467788999999999998876 5677788888888888887 5555443322111 111 13
Q ss_pred CCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCccccc
Q 045877 472 KIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIG 551 (801)
Q Consensus 472 ~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~ 551 (801)
.|++|+|++|.++ .+|. |+.+++|++|+|++|.+. .+|..|++|++|++|+|++|.+.+ +| .++
T Consensus 442 ~L~~L~Ls~n~l~------------~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~ 505 (567)
T 1dce_A 442 DVRVLHLAHKDLT------------VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVA 505 (567)
T ss_dssp TCSEEECTTSCCS------------SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGT
T ss_pred CceEEEecCCCCC------------CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccC
Confidence 5999999999985 3455 889999999999998554 899999999999999999997665 77 899
Q ss_pred CCCCCCEEcccCCccccCC-CcccCCCCcccccccccccCCcchhhhhhcccCccc----ccCCccCCeeEe
Q 045877 552 KLKSLTHLDISECFLLDGI-PKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKD----LEKLEHLRKLTI 618 (801)
Q Consensus 552 ~L~~L~~L~Ls~n~l~~~~-p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~----l~~L~~L~~L~L 618 (801)
.|++|++|+|++|.+.+.. |..|+.+++|+.|+ +++|. ....+.. +..+++|+.|++
T Consensus 506 ~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~---L~~N~-------l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN---LQGNS-------LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE---CTTSG-------GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE---ecCCc-------CCCCccHHHHHHHHCcccCccCC
Confidence 9999999999999998876 99999999999999 88888 4444443 334788988864
No 123
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.49 E-value=1.2e-14 Score=169.66 Aligned_cols=185 Identities=9% Similarity=0.104 Sum_probs=130.1
Q ss_pred CCCCcceeecCcchhhHhhhh-ccceeeCCCCChhH---HHHHHHHhhhcccccccccccchhhhhHHHHHhhhccCCcc
Q 045877 90 KISSSEQIKKNEEKDASEADQ-SVQVHPLNQLDHDL---IYMQYALKRLKGFEGTFGKSIQDLKDDLELVLTSQATGSKS 165 (801)
Q Consensus 90 ~~~s~~~vttr~~~~~~~~~~-~~~~~~l~~l~~~~---lf~~~af~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (801)
..+++++||||...++..+.. ...+..+++|+.+| +|...++....
T Consensus 255 ~~~~~ilvTsR~~~~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~------------------------------ 304 (591)
T 1z6t_A 255 DSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKA------------------------------ 304 (591)
T ss_dssp CSSCEEEEEESCGGGGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSCGG------------------------------
T ss_pred cCCCeEEEECCCcHHHHhcCCCceEeecCCCCCHHHHHHHHHHHhCCCcc------------------------------
Confidence 357899999999998775431 22333346899988 77776643111
Q ss_pred chhhhhhhHHHHHHHHHHHHHhCCCCCcccCCCCC---chhHHhhhccCCC---CCCCCccccccccchhHHHHHHhhhc
Q 045877 166 VQEVETLQDEIRRISQKFLNLKSKIPPVNSSSSDD---SDAQQRRRINQSK---DLPNMADKTRFKEHDFFIEFKKIFQS 239 (801)
Q Consensus 166 ~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~~l~~---~~~~~W~~~l~~~---~~~~~~~~~~~~~~~i~~~L~~SYd~ 239 (801)
...+.+.+|+++|+|+|+|+ ..++. .....|..+++.. ...............|..++..||+.
T Consensus 305 ---------~~~~~~~~i~~~~~G~PLal-~~~a~~l~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~ 374 (591)
T 1z6t_A 305 ---------DLPEQAHSIIKECKGSPLVV-SLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEM 374 (591)
T ss_dssp ---------GSCTHHHHHHHHHTTCHHHH-HHHHHHHHHSTTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHT
T ss_pred ---------cccHHHHHHHHHhCCCcHHH-HHHHHHHhcCchhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHh
Confidence 12346789999999999996 33332 2234576554431 11111100011123699999999999
Q ss_pred cC-CCccccceecccCCCceechhhHHHHHHHcCCCcccccCCCChHHHHHHHHHHHHhcCcccccccccCCccceEEec
Q 045877 240 LG-NDQSCLLCFAVFPENAVIKKRLLVNWWIGEGFLKERIQGENSAEKAADKLLREFEEKGFILPVDKKHRGVANSFRMS 318 (801)
Q Consensus 240 L~-~~K~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~~~~~~~L~~r~ll~~~~~~~~~~~~~~~mH 318 (801)
|+ +.|.||++||+||+++.|+.+.++..|.++ .+.++.++.+|+++|||+.... +...+|+||
T Consensus 375 L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------------~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H 438 (591)
T 1z6t_A 375 LREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------------TEEVEDILQEFVNKSLLFCDRN---GKSFRYYLH 438 (591)
T ss_dssp SCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------------HHHHHHHHHHHHHTTSSEEEEE---TTEEEEECC
T ss_pred CCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------------HHHHHHHHHHHHhCcCeEEecC---CCccEEEEc
Confidence 99 999999999999999999999999999543 2457889999999999985532 233489999
Q ss_pred hhHHHHHHHHhh
Q 045877 319 PLVRSAVITLAK 330 (801)
Q Consensus 319 dlv~dl~~~~a~ 330 (801)
+++|++++..+.
T Consensus 439 ~lv~~~~~~~~~ 450 (591)
T 1z6t_A 439 DLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHTG
T ss_pred HHHHHHHHhhhh
Confidence 999999998744
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=7.9e-15 Score=174.32 Aligned_cols=189 Identities=19% Similarity=0.129 Sum_probs=114.3
Q ss_pred cccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCC
Q 045877 429 SLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKEL 508 (801)
Q Consensus 429 ~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L 508 (801)
+++.|++. ..+..|..+..|+.|.+.+|.+..++...| ++++|++|+|++|.|+ .+|..|+++++|
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~------------~lp~~~~~l~~L 272 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLT------------ELPAEIKNLSNL 272 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCS------------CCCGGGGGGTTC
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCc------------ccChhhhCCCCC
Confidence 33444444 557888999999999999999998776665 8999999999999984 457889999999
Q ss_pred ceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcc-ccccccc
Q 045877 509 RLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL-QVLKGFV 587 (801)
Q Consensus 509 ~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L-~~L~~~~ 587 (801)
++|+|++|.+. .+|..|++|++|++|+|++|.+ +.+|..|++|++|++|+|++|.+.+.+|..+..+... ..|+
T Consensus 273 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~--- 347 (727)
T 4b8c_D 273 RVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY--- 347 (727)
T ss_dssp CEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH---
T ss_pred CEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHh---
Confidence 99999998655 8899999999999999999954 6889999999999999999999998888877654322 2244
Q ss_pred ccCCcchhhhhhcccCcccccCCccCCeeEeeccc--------ccccccChhhhhcccCCcEEEeeccCCC
Q 045877 588 ISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININS--------EKFQTENLSTVLAFKRLLQLKVSWGGGS 650 (801)
Q Consensus 588 l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~--------~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 650 (801)
+.+|. + .... ...|+.|+++.|. +.... ...+..+..+....+++|.+.
T Consensus 348 l~~N~-----l-~~~~------p~~l~~l~l~~n~~~~~~~~~l~~~~--~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 348 LRDNR-----P-EIPL------PHERRFIEINTDGEPQREYDSLQQST--EHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHCC-----C-CCCC------CCC-------------------------------------------CCC
T ss_pred hccCc-----c-cCcC------ccccceeEeecccccccccCCccccc--cchhhcccccceeeeeccccc
Confidence 56665 1 1122 2346666777662 11111 233455666677777888765
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.45 E-value=1.5e-13 Score=135.53 Aligned_cols=130 Identities=18% Similarity=0.107 Sum_probs=86.5
Q ss_pred ccccccchhhcchhhhhhccccCceeeecCCcccCCCChh-hhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcC
Q 045877 426 FNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYD-WFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKN 504 (801)
Q Consensus 426 ~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~-~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~ 504 (801)
+.+++++|+|+.++...+ ..++.|.+.+|.+..+++. .|.++++|++|+|++|.+++. .|..|..
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-----------EPNAFEG 76 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-----------CTTTTTT
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-----------CHhHcCC
Confidence 456777777755543222 2667777777777766653 467777777777777776432 2556677
Q ss_pred CcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccC
Q 045877 505 MKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDG 569 (801)
Q Consensus 505 l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~ 569 (801)
+++|++|+|++|.+.+..+..|.++++|++|+|++|.+.+..|..|..+++|++|+|++|.+.+.
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 77777777777766555556677777777777777766666677777777777777777766543
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=2.7e-13 Score=130.54 Aligned_cols=140 Identities=24% Similarity=0.178 Sum_probs=87.2
Q ss_pred ccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCc
Q 045877 468 SKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLP 547 (801)
Q Consensus 468 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp 547 (801)
...++|+.|+|++|.++.. .+|..+..+++|++|+|++|.+.+ + ..++.+++|++|+|++|.+.+.+|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~----------~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~ 88 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDG----------KIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLD 88 (168)
T ss_dssp SCTTSCSEEECCSCBCBTT----------BCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCC
T ss_pred CCcccCCEEECCCCCCChh----------hHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHH
Confidence 3456788888888877421 344556777788888888875443 3 667778888888888877666677
Q ss_pred ccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccc
Q 045877 548 DEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQT 627 (801)
Q Consensus 548 ~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~ 627 (801)
..+..+++|++|++++|.+.+. | .+..+..+++|+.|++++|.+....
T Consensus 89 ~~~~~l~~L~~L~Ls~N~l~~~-~-------------------------------~~~~l~~l~~L~~L~l~~N~l~~~~ 136 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGNKLKDI-S-------------------------------TLEPLKKLECLKSLDLFNCEVTNLN 136 (168)
T ss_dssp HHHHHCTTCCEEECBSSSCCSS-G-------------------------------GGGGGSSCSCCCEEECCSSGGGTST
T ss_pred HHHhhCCCCCEEeccCCccCcc-h-------------------------------hHHHHhcCCCCCEEEeeCCcCcchH
Confidence 7777778888888887775432 1 0123444555555566655555432
Q ss_pred cC-hhhhhcccCCcEEEeeccCCCC
Q 045877 628 EN-LSTVLAFKRLLQLKVSWGGGSA 651 (801)
Q Consensus 628 ~~-~~~l~~l~~L~~L~L~~n~l~~ 651 (801)
.. ...+..+++|+.|++++|.+..
T Consensus 137 ~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 137 DYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp THHHHHHTTCSSCCEETTEETTSCB
T ss_pred HHHHHHHHhCccCcEecCCCCChhh
Confidence 00 0345566666666666665543
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.41 E-value=2.7e-13 Score=130.51 Aligned_cols=129 Identities=19% Similarity=0.117 Sum_probs=66.4
Q ss_pred cccccccccchhhc-chhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHh
Q 045877 423 KKLFNFSLSLEEIE-NKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKG 501 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~ 501 (801)
++|+.|++++|+|+ +.+|..+..+++|+.|.+.+|.+..+ ..|..+++|++|+|++|.++. .+|..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~ 90 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFG-----------GLDML 90 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCS-----------CCCHH
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCch-----------HHHHH
Confidence 55666666666665 44444455555555555555555544 445555555555555555532 12344
Q ss_pred hcCCcCCceEeecCCCCCccCc--hhhcCCCCCCEEeccCCCCCCCCc---ccccCCCCCCEEcccCCc
Q 045877 502 LKNMKELRLLSLQGMSGIQELP--SEISYLTSLEILDLRACYNLDKLP---DEIGKLKSLTHLDISECF 565 (801)
Q Consensus 502 l~~l~~L~~L~Ls~n~~~~~lp--~~i~~L~~L~~L~Ls~n~~~~~lp---~~~~~L~~L~~L~Ls~n~ 565 (801)
+..+++|++|+|++|.+ ..+| ..++.+++|++|+|++|.+.+..+ ..+..+++|++|++++|.
T Consensus 91 ~~~l~~L~~L~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHHCTTCCEEECBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred HhhCCCCCEEeccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 44455555555555532 2222 445555555555555554333322 245555555555555554
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=2.5e-13 Score=128.02 Aligned_cols=106 Identities=21% Similarity=0.192 Sum_probs=55.7
Q ss_pred hhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCC
Q 045877 466 WFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDK 545 (801)
Q Consensus 466 ~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~ 545 (801)
.|..+++|++|+|++|.++. + ..+..+++|++|+|++|.+.+.+|..++.+++|++|++++|.+.+.
T Consensus 37 ~~~~l~~L~~L~l~~n~l~~------------~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~ 103 (149)
T 2je0_A 37 LTDEFEELEFLSTINVGLTS------------I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103 (149)
T ss_dssp CCTTCTTCCEEECTTSCCCC------------C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSH
T ss_pred HHhhcCCCcEEECcCCCCCC------------c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCCh
Confidence 44555555555555555531 1 3455555566666655544444555555555666666665543331
Q ss_pred -CcccccCCCCCCEEcccCCccccCCC---cccCCCCcccccc
Q 045877 546 -LPDEIGKLKSLTHLDISECFLLDGIP---KKLSLLSKLQVLK 584 (801)
Q Consensus 546 -lp~~~~~L~~L~~L~Ls~n~l~~~~p---~~~~~L~~L~~L~ 584 (801)
.+..++.+++|++|++++|.+.+..+ ..+..+++|+.|+
T Consensus 104 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 104 STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccccc
Confidence 22455555666666666665544333 2455555555555
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.39 E-value=4.5e-13 Score=132.17 Aligned_cols=126 Identities=14% Similarity=0.056 Sum_probs=89.0
Q ss_pred eeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhh-HhhcCCcCCceEeecCCCCCccCchhhcC
Q 045877 450 ETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYL-KGLKNMKELRLLSLQGMSGIQELPSEISY 528 (801)
Q Consensus 450 ~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp-~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~ 528 (801)
+++.+.++.+..++...+. +|++|+|++|.++... + ..|..+++|++|+|++|.+.+..|..|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~---~l~~L~l~~n~i~~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL---HTTELLLNDNELGRIS-----------SDGLFGRLPHLVKLELKRNQLTGIEPNAFEG 76 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT---TCSEEECCSCCCCSBC-----------CSCSGGGCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred CEEEcCCCCcCcCccCCCC---CCCEEECCCCcCCccC-----------CccccccCCCCCEEECCCCCCCCcCHhHcCC
Confidence 5667777777666553332 6778888888774321 1 13677778888888887666666777777
Q ss_pred CCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCc
Q 045877 529 LTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHA 592 (801)
Q Consensus 529 L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~ 592 (801)
+++|++|+|++|.+.+..+..|..+++|++|+|++|++.+..|..|..+++|++|+ +++|.
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~---L~~N~ 137 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN---LASNP 137 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE---CTTCC
T ss_pred cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE---eCCCC
Confidence 88888888888777766666677778888888888877777777777777777776 66665
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.38 E-value=4.1e-13 Score=126.51 Aligned_cols=132 Identities=21% Similarity=0.162 Sum_probs=71.8
Q ss_pred CCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCccc
Q 045877 470 LEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDE 549 (801)
Q Consensus 470 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~ 549 (801)
.++|+.|++++|.++.. .+|..+..+++|++|+|++|.+.+. ..++.+++|++|+|++|.+.+.+|..
T Consensus 16 ~~~l~~L~l~~n~l~~~----------~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~ 83 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEG----------KLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVL 83 (149)
T ss_dssp GGGCSEEECTTCBCBTT----------BCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHH
T ss_pred CccCeEEEccCCcCChh----------HHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHH
Confidence 34566666666655311 2334455556666666666533322 44555666666666665555445555
Q ss_pred ccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccC
Q 045877 550 IGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTEN 629 (801)
Q Consensus 550 ~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~ 629 (801)
++.+++|++|++++|.+.+. + .+..++.+++|++|++++|.+......
T Consensus 84 ~~~l~~L~~L~ls~N~i~~~-~-------------------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~ 131 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKDL-S-------------------------------TIEPLKKLENLKSLDLFNCEVTNLNDY 131 (149)
T ss_dssp HHHCTTCCEEECTTSCCCSH-H-------------------------------HHGGGGGCTTCCEEECTTCGGGGSTTH
T ss_pred hhhCCCCCEEECCCCcCCCh-H-------------------------------HHHHHhhCCCCCEEeCcCCcccchHHH
Confidence 55556666666665554321 1 124455666677777777766554310
Q ss_pred -hhhhhcccCCcEEEee
Q 045877 630 -LSTVLAFKRLLQLKVS 645 (801)
Q Consensus 630 -~~~l~~l~~L~~L~L~ 645 (801)
...+..+++|+.|+++
T Consensus 132 ~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 132 RENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHHHCTTCCEETTB
T ss_pred HHHHHHHCCCcccccCC
Confidence 1356677777777664
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.37 E-value=2e-12 Score=125.65 Aligned_cols=131 Identities=15% Similarity=0.031 Sum_probs=87.2
Q ss_pred ccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCC
Q 045877 426 FNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNM 505 (801)
Q Consensus 426 ~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l 505 (801)
+.+++++|++..++...+ ++++.|.+.+|.+..+++..|.++++|++|+|++|.++... +..+..+
T Consensus 10 ~~l~~~~~~l~~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------~~~~~~l 75 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP-----------DGVFDKL 75 (177)
T ss_dssp TEEECCSSCCSSCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-----------TTTTTTC
T ss_pred CEEEecCCCCccCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC-----------hhHccCC
Confidence 456677777766543332 46777777777777777777777777777777777774321 3345677
Q ss_pred cCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCC
Q 045877 506 KELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGI 570 (801)
Q Consensus 506 ~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~ 570 (801)
++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus 76 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 77777777777555444455677777777777777655444444566777777777777765433
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.36 E-value=2.2e-12 Score=127.28 Aligned_cols=106 Identities=26% Similarity=0.132 Sum_probs=58.8
Q ss_pred CCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCccccc
Q 045877 472 KIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIG 551 (801)
Q Consensus 472 ~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~ 551 (801)
+|++|+|++|.++ .+|..|..+++|++|+|++|.+.+..+..|.++++|++|+|++|.+.+..|..|.
T Consensus 32 ~l~~L~L~~n~i~------------~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~ 99 (193)
T 2wfh_A 32 DVTELYLDGNQFT------------LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99 (193)
T ss_dssp TCCEEECCSSCCC------------SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred CCCEEECCCCcCc------------hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhC
Confidence 4556666666552 2344555556666666666544444444555666666666666555554455555
Q ss_pred CCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCc
Q 045877 552 KLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHA 592 (801)
Q Consensus 552 ~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~ 592 (801)
.+++|++|+|++|.+....+..|..+++|+.|+ +++|.
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~---L~~N~ 137 (193)
T 2wfh_A 100 GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA---IGANP 137 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE---CCSSC
T ss_pred CCCCCCEEECCCCCCCeeChhhhhcCccccEEE---eCCCC
Confidence 666666666666655544334455555666555 55554
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=3.4e-12 Score=125.89 Aligned_cols=107 Identities=21% Similarity=0.214 Sum_probs=53.8
Q ss_pred CCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccc
Q 045877 507 ELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGF 586 (801)
Q Consensus 507 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~ 586 (801)
+|++|+|++|. +..+|..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|.+.+..|..|..+++|++|+
T Consensus 32 ~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~-- 108 (193)
T 2wfh_A 32 DVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS-- 108 (193)
T ss_dssp TCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE--
T ss_pred CCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE--
Confidence 45555555542 234445555555555555555544444444455555555555555555544444455555555555
Q ss_pred cccCCcchhhhhhcccCcc-cccCCccCCeeEeeccccc
Q 045877 587 VISDHAEDDRRWKRWCSLK-DLEKLEHLRKLTININSEK 624 (801)
Q Consensus 587 ~l~~n~~~~~~~~~~~~~~-~l~~L~~L~~L~L~~n~~~ 624 (801)
+++|. +..++. .|..+++|+.|+|++|.+.
T Consensus 109 -L~~N~-------l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 109 -LHGND-------ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp -CCSSC-------CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred -CCCCC-------CCeeChhhhhcCccccEEEeCCCCee
Confidence 45444 222332 3445555555555555543
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.34 E-value=2.1e-14 Score=142.56 Aligned_cols=141 Identities=16% Similarity=0.088 Sum_probs=96.6
Q ss_pred hhhhhhhccccccccccchhhcchhhh------hhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCC
Q 045877 415 KAVEFEKIKKLFNFSLSLEEIENKAKD------CAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDI 488 (801)
Q Consensus 415 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~------~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~ 488 (801)
....+.....++.++++.+.+.+..+. .+..+++|++|.+.+|.+..++ .|.++++|+.|+|++|.++
T Consensus 10 ~~~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~---- 83 (198)
T 1ds9_A 10 AIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIK---- 83 (198)
T ss_dssp HHHHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEEC----
T ss_pred HHHHHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcc----
Confidence 345577888999999999999887665 6777777777777777777754 6777777777777777763
Q ss_pred CcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCc-ccccCCCCCCEEcccCCccc
Q 045877 489 PHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLP-DEIGKLKSLTHLDISECFLL 567 (801)
Q Consensus 489 ~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp-~~~~~L~~L~~L~Ls~n~l~ 567 (801)
.+|..+..+++|++|+|++|.+. .+| .++.+++|++|+|++|.+....+ ..+..+++|++|++++|.+.
T Consensus 84 --------~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 84 --------KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp --------SCSSHHHHHHHCSEEEEEEEECC-CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred --------cccchhhcCCcCCEEECcCCcCC-cCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 33445555677777777776443 355 46677777777777775443211 35667777777777777765
Q ss_pred cCCC
Q 045877 568 DGIP 571 (801)
Q Consensus 568 ~~~p 571 (801)
+.+|
T Consensus 154 ~~~~ 157 (198)
T 1ds9_A 154 NDYK 157 (198)
T ss_dssp HHHH
T ss_pred cccc
Confidence 5444
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.33 E-value=1.3e-12 Score=140.54 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=41.7
Q ss_pred ccccccccccchhhc--------------------chhhhhhcc--------ccCceeeecCCcccCCCChhhhccCCCC
Q 045877 422 IKKLFNFSLSLEEIE--------------------NKAKDCAMK--------RGRIETLFNVSEEFPEFKYDWFSKLEKI 473 (801)
Q Consensus 422 l~~L~~L~Ls~N~l~--------------------~~~~~~~~~--------~~~L~~L~l~~n~i~~~~~~~f~~l~~L 473 (801)
+++|+.|||++|+|. .+...+|.. +.+|+.+.+.. .+..+...+|.+|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 677999999999998 334455555 66666666655 6666666666666666
Q ss_pred CEEEcCCccc
Q 045877 474 KVLYLGRWQS 483 (801)
Q Consensus 474 ~~L~Ls~n~l 483 (801)
+.|+|++|.+
T Consensus 127 ~~l~l~~n~i 136 (329)
T 3sb4_A 127 KICQIRKKTA 136 (329)
T ss_dssp CEEEBCCSSC
T ss_pred ceEEcCCCCc
Confidence 6666666654
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.30 E-value=3.8e-12 Score=136.82 Aligned_cols=58 Identities=12% Similarity=0.112 Sum_probs=32.7
Q ss_pred CcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccC
Q 045877 505 MKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISE 563 (801)
Q Consensus 505 l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~ 563 (801)
|.+|+.|+|.+ .+...-+.+|.+|++|+.|++.+|.+...-+..|..+.++.++.+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 66666666665 33333334566666666666666655544455565555555555544
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.28 E-value=2.6e-12 Score=124.75 Aligned_cols=58 Identities=16% Similarity=0.048 Sum_probs=27.1
Q ss_pred CCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCcc
Q 045877 507 ELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFL 566 (801)
Q Consensus 507 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l 566 (801)
+|++|+|++|.+.+ + ..++.+++|++|+|++|.+.+..+..+..+++|++|++++|.+
T Consensus 43 ~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 100 (176)
T 1a9n_A 43 QFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100 (176)
T ss_dssp CCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC
T ss_pred CCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC
Confidence 55555555543322 2 3445555555555555543332222234555555555555544
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.28 E-value=1.5e-12 Score=126.32 Aligned_cols=128 Identities=17% Similarity=0.105 Sum_probs=70.6
Q ss_pred cccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCc-
Q 045877 445 KRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELP- 523 (801)
Q Consensus 445 ~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp- 523 (801)
...+|+.|.+.+|.+..+ +......++|++|+|++|.++. + ..+..+++|++|+|++|.+. .+|
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~------------~-~~l~~l~~L~~L~Ls~N~l~-~~~~ 81 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK------------L-DGFPLLRRLKTLLVNNNRIC-RIGE 81 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE------------E-CCCCCCSSCCEEECCSSCCC-EECS
T ss_pred CcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCc------------c-cccccCCCCCEEECCCCccc-ccCc
Confidence 344455555555555544 2222223366666666666631 2 34566666666666666443 333
Q ss_pred hhhcCCCCCCEEeccCCCCCCCCcc--cccCCCCCCEEcccCCccccCCCcc----cCCCCcccccccccccCCc
Q 045877 524 SEISYLTSLEILDLRACYNLDKLPD--EIGKLKSLTHLDISECFLLDGIPKK----LSLLSKLQVLKGFVISDHA 592 (801)
Q Consensus 524 ~~i~~L~~L~~L~Ls~n~~~~~lp~--~~~~L~~L~~L~Ls~n~l~~~~p~~----~~~L~~L~~L~~~~l~~n~ 592 (801)
..++.+++|++|+|++|.+ +.+|. .+..+++|++|++++|.+. .+|.. +..+++|+.|+ ++.|.
T Consensus 82 ~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld---~~~n~ 151 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD---FQKVK 151 (176)
T ss_dssp CHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET---TEECC
T ss_pred chhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeC---CCcCC
Confidence 3336666666666666643 44454 5666666666666666654 34443 56666666666 44444
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=4e-11 Score=116.33 Aligned_cols=104 Identities=17% Similarity=0.014 Sum_probs=50.5
Q ss_pred eeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCC
Q 045877 450 ETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYL 529 (801)
Q Consensus 450 ~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L 529 (801)
+.+...++.+..++...+ ++|+.|+|++|.++... +..+..+++|++|+|++|.+.+..+..++.+
T Consensus 10 ~~l~~~~~~l~~~p~~~~---~~l~~L~l~~n~l~~~~-----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 75 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLP-----------HGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL 75 (177)
T ss_dssp TEEECCSSCCSSCCTTCC---TTCSEEECCSSCCCCCC-----------TTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred CEEEecCCCCccCCCCCC---CCCcEEEeCCCcccEeC-----------HHHhcCcccccEEECCCCcceEeChhHccCC
Confidence 344455555554443222 35555555555553211 2234555555555555554333333334555
Q ss_pred CCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccc
Q 045877 530 TSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLL 567 (801)
Q Consensus 530 ~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~ 567 (801)
++|++|+|++|.+.+..+..+..+++|++|++++|.+.
T Consensus 76 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK 113 (177)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce
Confidence 55555555555444433334455555555555555544
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.19 E-value=1.9e-10 Score=126.55 Aligned_cols=249 Identities=11% Similarity=0.038 Sum_probs=153.0
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
..++.+.+. |.++.+...+|.+. +|+.+.+..+ +..+...+|.++ +|+.+.|.. .++.. -...|
T Consensus 113 ~~l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I-----------~~~aF 176 (401)
T 4fdw_A 113 KGYNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQL-----------KEDIF 176 (401)
T ss_dssp SSCSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEE-----------CSSTT
T ss_pred CCccEEEEC-CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEe-----------hHHHh
Confidence 344444443 34666667777664 6777776544 667777777775 577777775 23211 13457
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~ 582 (801)
.+|.+|+.++|.+|. +..++.......+|+.+.|..+ +...-...|.++.+|+.+++..+ +...-...|.+ .+|+.
T Consensus 177 ~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 177 YYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT 252 (401)
T ss_dssp TTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred hCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence 777888888887753 4445543333577888887754 44444556777778888887765 33333334555 66777
Q ss_pred cccccccCCcchhhhhhcccCcccccCCccCCeeEeeccccc-----ccccChhhhhcccCCcEEEeeccCCCCCCCCCC
Q 045877 583 LKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEK-----FQTENLSTVLAFKRLLQLKVSWGGGSANKSTKP 657 (801)
Q Consensus 583 L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~-----~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 657 (801)
+. +.++- .......|.++++|+.+++.++.+. ... ..+|.++++|+.+.|.. .+.......+
T Consensus 253 i~---lp~~i-------~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~--~~aF~~c~~L~~l~l~~-~i~~I~~~aF 319 (401)
T 4fdw_A 253 VK---LPNGV-------TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH--PYCLEGCPKLARFEIPE-SIRILGQGLL 319 (401)
T ss_dssp EE---EETTC-------CEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC--TTTTTTCTTCCEECCCT-TCCEECTTTT
T ss_pred EE---eCCCc-------cEEChhHhhCCCCCCEEEeCCccccCCcccEEC--HHHhhCCccCCeEEeCC-ceEEEhhhhh
Confidence 76 54433 1122356778888888888777654 222 56788888888888863 3433222111
Q ss_pred CCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCccc
Q 045877 658 EPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWE 734 (801)
Q Consensus 658 ~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~ 734 (801)
.-+.+|+.+.|..+ +..+....+ .++ +|+.|++.+|.+..+....|.
T Consensus 320 ---------------------------~~c~~L~~l~lp~~-l~~I~~~aF-~~~-~L~~l~l~~n~~~~l~~~~F~ 366 (401)
T 4fdw_A 320 ---------------------------GGNRKVTQLTIPAN-VTQINFSAF-NNT-GIKEVKVEGTTPPQVFEKVWY 366 (401)
T ss_dssp ---------------------------TTCCSCCEEEECTT-CCEECTTSS-SSS-CCCEEEECCSSCCBCCCSSCC
T ss_pred ---------------------------cCCCCccEEEECcc-ccEEcHHhC-CCC-CCCEEEEcCCCCccccccccc
Confidence 22367888888554 455555544 467 888888888887777766663
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.18 E-value=2.9e-10 Score=125.17 Aligned_cols=245 Identities=10% Similarity=0.026 Sum_probs=145.4
Q ss_pred cCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhh
Q 045877 447 GRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526 (801)
Q Consensus 447 ~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i 526 (801)
..+..+.+. +.+..+...+|.++ +|+.+.|..+ ++... ..+|.++ +|+.+.|.. ++...-+.+|
T Consensus 113 ~~l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~-----------~~aF~~~-~L~~i~lp~-~l~~I~~~aF 176 (401)
T 4fdw_A 113 KGYNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIG-----------DMAFFNS-TVQEIVFPS-TLEQLKEDIF 176 (401)
T ss_dssp SSCSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CCEEC-----------TTTTTTC-CCCEEECCT-TCCEECSSTT
T ss_pred CCccEEEEC-CccCEehHhhcccC-CccEEEeCCC-ccEEC-----------HHhcCCC-CceEEEeCC-CccEehHHHh
Confidence 445555443 45666777778776 6888887766 32111 2345553 588888876 3444444677
Q ss_pred cCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCccc
Q 045877 527 SYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKD 606 (801)
Q Consensus 527 ~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~ 606 (801)
.++.+|+.++|.+|.+...-...|. ..+|+.+.+..+ +...-...|.++.+|+.+. +..+. .......
T Consensus 177 ~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~---l~~~l-------~~I~~~a 244 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE---IPENV-------STIGQEA 244 (401)
T ss_dssp TTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEE---CCTTC-------CEECTTT
T ss_pred hCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEe---cCCCc-------cCccccc
Confidence 7888888888887644433333343 577888888754 4444445677777888777 54443 1112234
Q ss_pred ccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhccccccccccccc
Q 045877 607 LEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHV 686 (801)
Q Consensus 607 l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~ 686 (801)
|.+ .+|+.+.|. +.+.... ..+|.++++|+.+.+..|.+...... .+....+.-
T Consensus 245 F~~-~~L~~i~lp-~~i~~I~--~~aF~~c~~L~~l~l~~~~~~~~~~~----------------------~I~~~aF~~ 298 (401)
T 4fdw_A 245 FRE-SGITTVKLP-NGVTNIA--SRAFYYCPELAEVTTYGSTFNDDPEA----------------------MIHPYCLEG 298 (401)
T ss_dssp TTT-CCCSEEEEE-TTCCEEC--TTTTTTCTTCCEEEEESSCCCCCTTC----------------------EECTTTTTT
T ss_pred ccc-CCccEEEeC-CCccEEC--hhHhhCCCCCCEEEeCCccccCCccc----------------------EECHHHhhC
Confidence 555 678888774 3344443 56778888888888877665411100 011111122
Q ss_pred CCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceeccccccccccccccc
Q 045877 687 ESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGL 754 (801)
Q Consensus 687 ~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l 754 (801)
+.+|+.+.|.+ .+..++...+ .+|.+|+.|+|..+ ++.+....| -.+ +|+.+++..|.+
T Consensus 299 c~~L~~l~l~~-~i~~I~~~aF-~~c~~L~~l~lp~~-l~~I~~~aF-----~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 299 CPKLARFEIPE-SIRILGQGLL-GGNRKVTQLTIPAN-VTQINFSAF-----NNT-GIKEVKVEGTTP 357 (401)
T ss_dssp CTTCCEECCCT-TCCEECTTTT-TTCCSCCEEEECTT-CCEECTTSS-----SSS-CCCEEEECCSSC
T ss_pred CccCCeEEeCC-ceEEEhhhhh-cCCCCccEEEECcc-ccEEcHHhC-----CCC-CCCEEEEcCCCC
Confidence 46777777774 3556665554 57788888888544 666666666 344 666677666654
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.16 E-value=4.2e-13 Score=133.07 Aligned_cols=135 Identities=20% Similarity=0.133 Sum_probs=66.9
Q ss_pred hHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCC
Q 045877 499 LKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLS 578 (801)
Q Consensus 499 p~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~ 578 (801)
|..+..+++|++|+|++|.+. .+| .++.+++|++|+|++|.+. .+|..+..+++|++|++++|.+.+ +| .+..++
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~ 115 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLV 115 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHH
T ss_pred hHHHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCC
Confidence 334455555555555554322 244 4455555555555554332 344444444555555555555443 33 344455
Q ss_pred cccccccccccCCcchhhhhhcccCc--ccccCCccCCeeEeecccccccccC--------hhhhhcccCCcEEEeeccC
Q 045877 579 KLQVLKGFVISDHAEDDRRWKRWCSL--KDLEKLEHLRKLTININSEKFQTEN--------LSTVLAFKRLLQLKVSWGG 648 (801)
Q Consensus 579 ~L~~L~~~~l~~n~~~~~~~~~~~~~--~~l~~L~~L~~L~L~~n~~~~~~~~--------~~~l~~l~~L~~L~L~~n~ 648 (801)
+|++|+ +++|. ....+ ..+..+++|++|++++|.+...... ...+..+++|+.|+ ++.
T Consensus 116 ~L~~L~---l~~N~-------i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~ 183 (198)
T 1ds9_A 116 NLRVLY---MSNNK-------ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMP 183 (198)
T ss_dssp HSSEEE---ESEEE-------CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGG
T ss_pred CCCEEE---CCCCc-------CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Ccc
Confidence 555555 44444 11111 2456666777777777766544200 12366777777775 444
Q ss_pred CC
Q 045877 649 GS 650 (801)
Q Consensus 649 l~ 650 (801)
++
T Consensus 184 i~ 185 (198)
T 1ds9_A 184 VD 185 (198)
T ss_dssp GT
T ss_pred cC
Confidence 43
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.09 E-value=3.4e-10 Score=109.00 Aligned_cols=103 Identities=20% Similarity=0.052 Sum_probs=57.3
Q ss_pred eeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCC
Q 045877 451 TLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLT 530 (801)
Q Consensus 451 ~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~ 530 (801)
.+.+.+|.+..++... .++|++|+|++|.+++. .+..|..+++|++|+|++|.+.+..+..|.+++
T Consensus 13 ~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 78 (170)
T 3g39_A 13 TVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKL-----------EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78 (170)
T ss_dssp EEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCC-----------CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred EEEeCCCCcCccCccC---CCCCcEEEcCCCcCCcc-----------ChhhhcCcccCCEEECCCCCcCccChhhccCCC
Confidence 3444444444443322 24566666666666432 144556666666666666644433334456666
Q ss_pred CCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccc
Q 045877 531 SLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLL 567 (801)
Q Consensus 531 ~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~ 567 (801)
+|++|+|++|.+.+..+..|..+++|++|+|++|.+.
T Consensus 79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6666666666555444445666666666666666654
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.08 E-value=2e-10 Score=110.59 Aligned_cols=103 Identities=17% Similarity=0.073 Sum_probs=72.9
Q ss_pred CCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccC
Q 045877 473 IKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGK 552 (801)
Q Consensus 473 L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~ 552 (801)
.++|++++|.++ .+|..+ ..+|++|+|++|.+.+..|..|.++++|++|+|++|++.+..+..|..
T Consensus 11 ~~~l~~s~n~l~------------~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~ 76 (170)
T 3g39_A 11 GTTVDCSGKSLA------------SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 76 (170)
T ss_dssp TTEEECTTSCCS------------SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CCEEEeCCCCcC------------ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccC
Confidence 467888888774 334433 367888888887666666777888888888888888766555556678
Q ss_pred CCCCCEEcccCCccccCCCcccCCCCcccccccccccCCc
Q 045877 553 LKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHA 592 (801)
Q Consensus 553 L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~ 592 (801)
+++|++|+|++|++.+..+..|..+++|++|+ +++|.
T Consensus 77 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~---L~~N~ 113 (170)
T 3g39_A 77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW---LLNNP 113 (170)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE---CCSSC
T ss_pred CCCCCEEECCCCccCEeCHHHhcCCCCCCEEE---eCCCC
Confidence 88888888888877655555566666666666 66665
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=2e-10 Score=110.99 Aligned_cols=104 Identities=17% Similarity=0.020 Sum_probs=54.5
Q ss_pred eeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCC
Q 045877 450 ETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYL 529 (801)
Q Consensus 450 ~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L 529 (801)
..+...+|.+..++...+ ++|++|+|++|.+++. .|..|.++++|++|+|++|.+.+..+..|.++
T Consensus 15 ~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~N~l~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP---TDKQRLWLNNNQITKL-----------EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL 80 (174)
T ss_dssp SEEECCSSCCSSCCSCCC---TTCSEEECCSSCCCCC-----------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cEEEeCCCCCCccCCCcC---CCCcEEEeCCCCcccc-----------CHHHhcCCcCCCEEECCCCCCCccChhHhCCc
Confidence 345555555555544322 5566666666665321 13455566666666666654333222334556
Q ss_pred CCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccc
Q 045877 530 TSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLL 567 (801)
Q Consensus 530 ~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~ 567 (801)
++|++|+|++|.+.+..+..|..+++|++|+|++|.+.
T Consensus 81 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 81 TQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred chhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 66666666665444333333555666666666666543
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.06 E-value=5.3e-10 Score=108.05 Aligned_cols=102 Identities=16% Similarity=0.119 Sum_probs=64.9
Q ss_pred CEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCC
Q 045877 474 KVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKL 553 (801)
Q Consensus 474 ~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L 553 (801)
+.+++++|.++ .+|..+. .+|++|+|++|.+.+..|..|+++++|++|+|++|++.+..+..|.++
T Consensus 15 ~~l~~~~n~l~------------~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIRLA------------SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL 80 (174)
T ss_dssp SEEECCSSCCS------------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cEEEeCCCCCC------------ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCc
Confidence 56777777663 3333332 567777777766555556667777777777777775554444445677
Q ss_pred CCCCEEcccCCccccCCCcccCCCCcccccccccccCCc
Q 045877 554 KSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHA 592 (801)
Q Consensus 554 ~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~ 592 (801)
++|++|+|++|++.+..+..|..+++|++|+ +++|.
T Consensus 81 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~---L~~N~ 116 (174)
T 2r9u_A 81 TQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY---LYNNP 116 (174)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEE---CCSSC
T ss_pred chhhEEECCCCccceeCHHHhccccCCCEEE---eCCCC
Confidence 7777777777776654444466777777776 66666
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.94 E-value=9.5e-09 Score=113.11 Aligned_cols=198 Identities=10% Similarity=-0.011 Sum_probs=110.2
Q ss_pred hhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchh
Q 045877 418 EFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTD 497 (801)
Q Consensus 418 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 497 (801)
.|...++|+.+.|.. .++.+...+|.++.+|+.+.+.. .+..+...+|.++..|+.+.+..+-.. -
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~c~~L~~i~~p~~l~~------------i 131 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPD-SVKMIGRCTFSGCYALKSILLPLMLKS------------I 131 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCCCCCCTTCCE------------E
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCC-CceEccchhhcccccchhhcccCceee------------e
Confidence 456666677777753 46666677777777777776643 355566667777777776666544211 0
Q ss_pred hhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCC
Q 045877 498 YLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLL 577 (801)
Q Consensus 498 lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L 577 (801)
-...|.++..+........ ...-..+|.++.+|+.+.+..+ ....-...|.++.+|+.+.+..+ +...-...|.++
T Consensus 132 ~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~ 207 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAEC 207 (394)
T ss_dssp CTTTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTC
T ss_pred cceeeecccccccccCccc--cccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccc
Confidence 0223444443333333222 2222356777777888777654 33333455667777777777665 333333456677
Q ss_pred CcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeecc
Q 045877 578 SKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWG 647 (801)
Q Consensus 578 ~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n 647 (801)
..|+.+. +..+. ...........+|+.+.+.... .... ...+.++..|+.+.+..+
T Consensus 208 ~~L~~i~---~~~~~--------~~i~~~~~~~~~l~~i~ip~~~-~~i~--~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 208 ILLENME---FPNSL--------YYLGDFALSKTGVKNIIIPDSF-TELG--KSVFYGCTDLESISIQNN 263 (394)
T ss_dssp TTCCBCC---CCTTC--------CEECTTTTTTCCCCEEEECTTC-CEEC--SSTTTTCSSCCEEEECCT
T ss_pred cccceee---cCCCc--------eEeehhhcccCCCceEEECCCc-eecc--cccccccccceeEEcCCC
Confidence 7777665 33332 1112223344566766665432 2222 345667777777777554
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.84 E-value=2.2e-08 Score=110.25 Aligned_cols=200 Identities=10% Similarity=-0.042 Sum_probs=131.6
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...|..+.+|+.++|.++ ++.+...+|..+..|+.+.+. +.+..+...+|.++..+...........+
T Consensus 87 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p-~~l~~i~~~aF~~~~~~~~~~~~~~~~i~---------- 154 (394)
T 4fs7_A 87 EFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP-LMLKSIGVEAFKGCDFKEITIPEGVTVIG---------- 154 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC-TTCCEECTTTTTTCCCSEEECCTTCCEEC----------
T ss_pred hhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc-CceeeecceeeecccccccccCccccccc----------
Confidence 345788889999999754 888888899999999887664 44666677788888766655544443211
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccC
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLS 575 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~ 575 (801)
...|.++.+|+.+.+..+ ....-...|.++.+|+.+.+..+ +...-...|.++..|+.+.+..+.. .+...+.
T Consensus 155 ---~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~~ 227 (394)
T 4fs7_A 155 ---DEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY--YLGDFAL 227 (394)
T ss_dssp ---TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC--EECTTTT
T ss_pred ---hhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce--Eeehhhc
Confidence 246888999999999864 44334467888899999988775 4444456677888888888776632 2333344
Q ss_pred CCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeecc
Q 045877 576 LLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWG 647 (801)
Q Consensus 576 ~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n 647 (801)
...+|+.+. +.... .......+..+.+|+.+.+..+.... . ...|..+..|+.+.+..+
T Consensus 228 ~~~~l~~i~---ip~~~-------~~i~~~~f~~~~~l~~~~~~~~~~~i-~--~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 228 SKTGVKNII---IPDSF-------TELGKSVFYGCTDLESISIQNNKLRI-G--GSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp TTCCCCEEE---ECTTC-------CEECSSTTTTCSSCCEEEECCTTCEE-C--SCTTTTCTTCCEEEECSS
T ss_pred ccCCCceEE---ECCCc-------eecccccccccccceeEEcCCCccee-e--ccccccccccceeccCce
Confidence 455666655 33322 11122456677788888877654322 2 455667777777766543
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.84 E-value=2.4e-10 Score=124.62 Aligned_cols=178 Identities=12% Similarity=0.025 Sum_probs=89.1
Q ss_pred hccccccccccchhhcchhhhhhccc-----cCceeeecCCcccCCCCh-hhhccCCCCCEEEcCCcccCCCCCCccccc
Q 045877 421 KIKKLFNFSLSLEEIENKAKDCAMKR-----GRIETLFNVSEEFPEFKY-DWFSKLEKIKVLYLGRWQSTVDDIPHIEIE 494 (801)
Q Consensus 421 ~l~~L~~L~Ls~N~l~~~~~~~~~~~-----~~L~~L~l~~n~i~~~~~-~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 494 (801)
-++.|+.|+|++|.|+......+... ..|+.|.+.+|.+..... ..+..+++|+.|+|++|.++...
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~------- 142 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEA------- 142 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHH-------
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHH-------
Confidence 35678888888888877655544333 456666666665543221 12223445666666666553210
Q ss_pred chhhhHhh-cCCcCCceEeecCCCCCc----cCchhhcCCCCCCEEeccCCCCCC----CCcccccCCCCCCEEcccCCc
Q 045877 495 STDYLKGL-KNMKELRLLSLQGMSGIQ----ELPSEISYLTSLEILDLRACYNLD----KLPDEIGKLKSLTHLDISECF 565 (801)
Q Consensus 495 ~~~lp~~l-~~l~~L~~L~Ls~n~~~~----~lp~~i~~L~~L~~L~Ls~n~~~~----~lp~~~~~L~~L~~L~Ls~n~ 565 (801)
...+...+ ....+|++|+|++|.+.. .++..+..+++|++|+|++|.+.. .+...+...++|++|+|++|.
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 01122222 234556666666654322 133334455556666666554321 112334444555555555554
Q ss_pred cccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcc
Q 045877 566 LLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAF 636 (801)
Q Consensus 566 l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l 636 (801)
++..- ...+...+...++|++|+|++|.+.... ...+..+
T Consensus 223 i~~~g-----------------------------~~~l~~~L~~~~~L~~L~Ls~N~i~~~g--~~~L~~~ 262 (372)
T 3un9_A 223 AGDTA-----------------------------ALALARAAREHPSLELLHLYFNELSSEG--RQVLRDL 262 (372)
T ss_dssp CCHHH-----------------------------HHHHHHHHHHCSSCCEEECTTSSCCHHH--HHHHHHC
T ss_pred CCHHH-----------------------------HHHHHHHHHhCCCCCEEeccCCCCCHHH--HHHHHHH
Confidence 32100 0012234455677888888888776554 3344433
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.83 E-value=3.3e-09 Score=114.59 Aligned_cols=103 Identities=18% Similarity=0.138 Sum_probs=78.8
Q ss_pred eeecCCc-ccCCCChhhhccCCCCCEEEcCC-cccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcC
Q 045877 451 TLFNVSE-EFPEFKYDWFSKLEKIKVLYLGR-WQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISY 528 (801)
Q Consensus 451 ~L~l~~n-~i~~~~~~~f~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~ 528 (801)
.+...++ .+..++. |..+++|+.|+|++ |.+++. .+..|.++.+|++|+|++|.+.+..|..|++
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~-----------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 78 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHL-----------ELRDLRGLGELRNLTIVKSGLRFVAPDAFHF 78 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEE-----------CGGGSCSCCCCSEEECCSSCCCEECTTGGGS
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCc-----------ChhHhccccCCCEEECCCCccceeCHHHhcC
Confidence 3455665 7887665 88888999999986 888432 2467888999999999998777777778889
Q ss_pred CCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccc
Q 045877 529 LTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLL 567 (801)
Q Consensus 529 L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~ 567 (801)
|++|++|+|++|.+.+..+..+..+. |++|+|.+|.+.
T Consensus 79 l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 79 TPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 99999999999876654444555555 999999988865
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.81 E-value=1e-08 Score=110.70 Aligned_cols=104 Identities=10% Similarity=-0.006 Sum_probs=82.1
Q ss_pred cccccch-hhcchhhhhhccccCceeeecCC-cccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcC
Q 045877 427 NFSLSLE-EIENKAKDCAMKRGRIETLFNVS-EEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKN 504 (801)
Q Consensus 427 ~L~Ls~N-~l~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~ 504 (801)
.++++++ +|++++. +..+.+|+.|++.+ |.|..+++..|.++++|+.|+|++|+|++. .+..|.+
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-----------~~~~~~~ 78 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-----------APDAFHF 78 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-----------CTTGGGS
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-----------CHHHhcC
Confidence 4678887 8887554 88888899999986 999999889999999999999999988642 2567889
Q ss_pred CcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCC
Q 045877 505 MKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLD 544 (801)
Q Consensus 505 l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~ 544 (801)
+++|++|+|++|.+.+..+..+..+. |++|+|.+|.+..
T Consensus 79 l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 79 TPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99999999999866544444455555 9999999986654
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.78 E-value=8e-10 Score=120.41 Aligned_cols=139 Identities=16% Similarity=0.010 Sum_probs=107.2
Q ss_pred cccccccccchhhcchhhhhh-ccccCceeeecCCcccCCCChhhh-----ccCCCCCEEEcCCcccCCCCCCcccccch
Q 045877 423 KKLFNFSLSLEEIENKAKDCA-MKRGRIETLFNVSEEFPEFKYDWF-----SKLEKIKVLYLGRWQSTVDDIPHIEIEST 496 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~f-----~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 496 (801)
++|+.|+|++|.|+......+ ..+.+|+.|++.+|.+.......+ ...+.|++|+|++|.++... ..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~-------~~ 173 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAG-------VA 173 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHH-------HH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHH-------HH
Confidence 799999999999977655444 356789999999999876544444 35688999999999985311 13
Q ss_pred hhhHhhcCCcCCceEeecCCCCCc----cCchhhcCCCCCCEEeccCCCCCC----CCcccccCCCCCCEEcccCCcccc
Q 045877 497 DYLKGLKNMKELRLLSLQGMSGIQ----ELPSEISYLTSLEILDLRACYNLD----KLPDEIGKLKSLTHLDISECFLLD 568 (801)
Q Consensus 497 ~lp~~l~~l~~L~~L~Ls~n~~~~----~lp~~i~~L~~L~~L~Ls~n~~~~----~lp~~~~~L~~L~~L~Ls~n~l~~ 568 (801)
.+...+..+++|++|+|++|.+.. .+...+...++|++|+|++|.+.. .+...+...++|++|+|++|.+..
T Consensus 174 ~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 174 VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 466777889999999999996543 245667888999999999997654 234455667899999999998764
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.63 E-value=5.3e-07 Score=99.04 Aligned_cols=98 Identities=19% Similarity=0.235 Sum_probs=46.4
Q ss_pred CCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceeccccccccccccccccCcCCCCceeecc
Q 045877 688 SKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQELFPKLEYLEKF 767 (801)
Q Consensus 688 ~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~~~~p~L~~L~l~ 767 (801)
..|+.+.+.. .+..++...+ .++.+|+.++|..+ ++.+....| -.+.+|+.+.+..+ +..+..--+.
T Consensus 288 ~~L~~i~l~~-~i~~I~~~aF-~~c~~L~~i~lp~~-v~~I~~~aF-----~~C~~L~~i~ip~s-----v~~I~~~aF~ 354 (394)
T 4gt6_A 288 PALQDIEFSS-RITELPESVF-AGCISLKSIDIPEG-ITQILDDAF-----AGCEQLERIAIPSS-----VTKIPESAFS 354 (394)
T ss_dssp TTCCEEECCT-TCCEECTTTT-TTCTTCCEEECCTT-CCEECTTTT-----TTCTTCCEEEECTT-----CCBCCGGGGT
T ss_pred cccccccCCC-cccccCceee-cCCCCcCEEEeCCc-ccEehHhHh-----hCCCCCCEEEECcc-----cCEEhHhHhh
Confidence 5677777653 3445665554 56777888877654 555555555 23344444443221 1112222345
Q ss_pred CCCCCcccCCCCC-----cccccCCcceEeCCCccc
Q 045877 768 KCHKVTLCPCDGY-----GIWEKSDLINLNNSKQQH 798 (801)
Q Consensus 768 ~c~~L~~lp~~~n-----~i~~~~~L~~LdlS~~~~ 798 (801)
+|.+|+.+-+.++ .+....+|+.+++..+.+
T Consensus 355 ~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 355 NCTALNNIEYSGSRSQWNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCTTCCEEEESSCHHHHHTCBCCCCC----------
T ss_pred CCCCCCEEEECCceeehhhhhccCCCCEEEeCCCCE
Confidence 5666665555444 445667777777766543
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.44 E-value=1.4e-07 Score=101.87 Aligned_cols=34 Identities=24% Similarity=0.154 Sum_probs=17.0
Q ss_pred CcCCceEeecCCCCCccCchhhc--CCCCCCEEecc
Q 045877 505 MKELRLLSLQGMSGIQELPSEIS--YLTSLEILDLR 538 (801)
Q Consensus 505 l~~L~~L~Ls~n~~~~~lp~~i~--~L~~L~~L~Ls 538 (801)
+++|+.|+|..|.+....-..++ .+++|++|+|+
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 55666666665543322222232 45666666654
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.39 E-value=3e-06 Score=92.96 Aligned_cols=289 Identities=10% Similarity=0.043 Sum_probs=145.2
Q ss_pred hhhhccccccccccchh---hcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCccccc
Q 045877 418 EFEKIKKLFNFSLSLEE---IENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIE 494 (801)
Q Consensus 418 ~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 494 (801)
.|....+|+.+.+..|. ++.+...+|..+..|+.+.+. +.+..+...+|.++.+|+.+.+..+...-
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~-~~~~~I~~~aF~~c~~L~~i~lp~~~~~I--------- 151 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPIL-DSVTEIDSEAFHHCEELDTVTIPEGVTSV--------- 151 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGG-TTCSEECTTTTTTCTTCCEEECCTTCCEE---------
T ss_pred HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccC-Cccceehhhhhhhhcccccccccceeeee---------
Confidence 34555555555555443 455555556555555555443 23444555556666666666665432110
Q ss_pred chhhhHhhcCCcCCceEeecCCCCCccCc-hhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcc
Q 045877 495 STDYLKGLKNMKELRLLSLQGMSGIQELP-SEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKK 573 (801)
Q Consensus 495 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~ 573 (801)
-...|..+..|+.+.+..+ +..+. .+|. ...|+.+.+..+ ....-...+..+.+|.......+.... +...
T Consensus 152 ---~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~~~~-~~~~ 223 (394)
T 4gt6_A 152 ---ADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIPAK-VTRIGTNAFSECFALSTITSDSESYPA-IDNV 223 (394)
T ss_dssp ---CTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSSSCB-SSSC
T ss_pred ---cccceecccccccccccce--eeEecccccc-ccceeEEEECCc-ccccccchhhhccccceeccccccccc-ccce
Confidence 0234555666666666543 22232 2332 345666665543 332333445555555555544332211 1100
Q ss_pred c--------------CCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCC
Q 045877 574 L--------------SLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRL 639 (801)
Q Consensus 574 ~--------------~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L 639 (801)
+ .....+..+. +.... .......|.++.+|+.+.+..+... .. ..+|.++.+|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~---ip~~v-------~~i~~~aF~~c~~L~~i~lp~~~~~-I~--~~aF~~c~~L 290 (394)
T 4gt6_A 224 LYEKSANGDYALIRYPSQREDPAFK---IPNGV-------ARIETHAFDSCAYLASVKMPDSVVS-IG--TGAFMNCPAL 290 (394)
T ss_dssp EEEECTTSCEEEEECCTTCCCSEEE---CCTTE-------EEECTTTTTTCSSCCEEECCTTCCE-EC--TTTTTTCTTC
T ss_pred eecccccccccccccccccccceEE---cCCcc-------eEcccceeeecccccEEecccccce-ec--Cccccccccc
Confidence 0 0001111111 11111 0111246788899999988765432 22 5678899999
Q ss_pred cEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEE
Q 045877 640 LQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLY 719 (801)
Q Consensus 640 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~ 719 (801)
+.+.+.. .+...... .+.-+.+|+.++|..+ +..+....+ .++.+|+.+.
T Consensus 291 ~~i~l~~-~i~~I~~~---------------------------aF~~c~~L~~i~lp~~-v~~I~~~aF-~~C~~L~~i~ 340 (394)
T 4gt6_A 291 QDIEFSS-RITELPES---------------------------VFAGCISLKSIDIPEG-ITQILDDAF-AGCEQLERIA 340 (394)
T ss_dssp CEEECCT-TCCEECTT---------------------------TTTTCTTCCEEECCTT-CCEECTTTT-TTCTTCCEEE
T ss_pred ccccCCC-cccccCce---------------------------eecCCCCcCEEEeCCc-ccEehHhHh-hCCCCCCEEE
Confidence 9999853 23322211 1122468888888754 455665544 5889999999
Q ss_pred eeCCcCCCCCCCcccccceeccccccccccccccccCcCCCCceeeccCCCCCcccCCCCC
Q 045877 720 IRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQELFPKLEYLEKFKCHKVTLCPCDGY 780 (801)
Q Consensus 720 L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~~~~p~L~~L~l~~c~~L~~lp~~~n 780 (801)
|..+ ++.++...| -++.+|+.+++..+.... . .+..|..|+.+.+..+
T Consensus 341 ip~s-v~~I~~~aF-----~~C~~L~~i~~~~~~~~~---~----~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 341 IPSS-VTKIPESAF-----SNCTALNNIEYSGSRSQW---N----AISTDSGLQNLPVAPG 388 (394)
T ss_dssp ECTT-CCBCCGGGG-----TTCTTCCEEEESSCHHHH---H----TCBCCCCC--------
T ss_pred ECcc-cCEEhHhHh-----hCCCCCCEEEECCceeeh---h----hhhccCCCCEEEeCCC
Confidence 9654 777777777 455666666665554321 0 2356667777666544
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.32 E-value=2.3e-07 Score=100.21 Aligned_cols=185 Identities=14% Similarity=0.035 Sum_probs=107.4
Q ss_pred hhhhccccccccccchhhc---------chhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCC
Q 045877 418 EFEKIKKLFNFSLSLEEIE---------NKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDI 488 (801)
Q Consensus 418 ~~~~l~~L~~L~Ls~N~l~---------~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~ 488 (801)
+...+++|+.|.+..+.+. +.+...+...++|+.|.+.++.-..+.+ + .+++|+.|+|..|.++.
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~--- 207 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPD--- 207 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCH---
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCCh---
Confidence 4556777777777654321 1244556677899999997763223322 3 38899999999988742
Q ss_pred CcccccchhhhHhhc--CCcCCceEeecCC--CCCc-----cCchhh--cCCCCCCEEeccCCCCCCCCcccc---cCCC
Q 045877 489 PHIEIESTDYLKGLK--NMKELRLLSLQGM--SGIQ-----ELPSEI--SYLTSLEILDLRACYNLDKLPDEI---GKLK 554 (801)
Q Consensus 489 ~~~~~~~~~lp~~l~--~l~~L~~L~Ls~n--~~~~-----~lp~~i--~~L~~L~~L~Ls~n~~~~~lp~~~---~~L~ 554 (801)
.....+. .+++|++|+|+.+ ...+ .+...+ ..+++|++|+|++|.+....+..+ ..++
T Consensus 208 --------~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~ 279 (362)
T 2ra8_A 208 --------SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP 279 (362)
T ss_dssp --------HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGG
T ss_pred --------HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCC
Confidence 2233443 7999999999642 1111 111222 246778888887775443222222 2356
Q ss_pred CCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhh
Q 045877 555 SLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVL 634 (801)
Q Consensus 555 ~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~ 634 (801)
+|++|+|+.|.+...-. ..+...+.++++|+.|+|++|.++... ...+.
T Consensus 280 ~L~~LdLs~n~L~d~G~-----------------------------~~L~~~L~~l~~L~~L~L~~n~i~d~~--~~~l~ 328 (362)
T 2ra8_A 280 QLETMDISAGVLTDEGA-----------------------------RLLLDHVDKIKHLKFINMKYNYLSDEM--KKELQ 328 (362)
T ss_dssp GCSEEECCSSCCBHHHH-----------------------------HHHHTTHHHHTTCSEEECCSBBCCHHH--HHHHH
T ss_pred CCCEEECCCCCCChHHH-----------------------------HHHHhhcccCCcceEEECCCCcCCHHH--HHHHH
Confidence 67777776665432100 012233456778888888888776543 33444
Q ss_pred cccCCcEEEeeccC
Q 045877 635 AFKRLLQLKVSWGG 648 (801)
Q Consensus 635 ~l~~L~~L~L~~n~ 648 (801)
..- ...++++.+.
T Consensus 329 ~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 329 KSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHC-CSEEECCSBC
T ss_pred HHc-CCEEEecCCc
Confidence 311 3557887776
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.13 E-value=5.7e-07 Score=92.24 Aligned_cols=16 Identities=25% Similarity=0.173 Sum_probs=7.5
Q ss_pred CCCEEcccCCccccCC
Q 045877 555 SLTHLDISECFLLDGI 570 (801)
Q Consensus 555 ~L~~L~Ls~n~l~~~~ 570 (801)
+|++|+|++|.+.+.+
T Consensus 221 ~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 221 KLEELWLDGNSLCDTF 236 (267)
T ss_dssp CCSEEECTTSTTGGGC
T ss_pred CcceEEccCCcCcccc
Confidence 4455555555444433
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.11 E-value=9.8e-05 Score=80.27 Aligned_cols=126 Identities=8% Similarity=0.007 Sum_probs=70.0
Q ss_pred hhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhh
Q 045877 419 FEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDY 498 (801)
Q Consensus 419 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 498 (801)
+..-.+|+.+.+. +.++.+...+|.++.+|+.+.+.. .+..+...+|.++ .|+.+.+..+ ++ .+
T Consensus 42 ~~~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~------------~I 105 (379)
T 4h09_A 42 YKDRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VK------------KF 105 (379)
T ss_dssp GGGGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CC------------EE
T ss_pred cccccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-ee------------Ee
Confidence 3344455555554 357777777888888888887753 4666777778777 4666666543 21 11
Q ss_pred h-HhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCC
Q 045877 499 L-KGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISEC 564 (801)
Q Consensus 499 p-~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n 564 (801)
. ..|.. .+|+.+.+..+ ....-...+.+ .+|..+.+-.+ ....-...+..+.+|+.+.+..+
T Consensus 106 ~~~aF~~-~~L~~i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 106 GDYVFQG-TDLDDFEFPGA-TTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp CTTTTTT-CCCSEEECCTT-CCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTT
T ss_pred ccceecc-CCcccccCCCc-ccccccccccc-ceeeeeeccce-eeccccchhcccccccccccccc
Confidence 1 23333 36777777653 32222233333 35555555543 33333345556666666665543
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.02 E-value=0.00013 Score=79.28 Aligned_cols=255 Identities=10% Similarity=0.022 Sum_probs=144.7
Q ss_pred hhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccch
Q 045877 417 VEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIEST 496 (801)
Q Consensus 417 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 496 (801)
..|....+|+.++|.. .++.+...+|.+. .|..+.+. +.+..+...+|.++ +|+.+.+..+-....
T Consensus 63 ~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~-~~l~~I~~~aF~~~-~L~~i~lp~~~~~i~---------- 128 (379)
T 4h09_A 63 ANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGM-ERVKKFGDYVFQGT-DLDDFEFPGATTEIG---------- 128 (379)
T ss_dssp TTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEEC-TTCCEECTTTTTTC-CCSEEECCTTCCEEC----------
T ss_pred HHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECC-ceeeEeccceeccC-CcccccCCCcccccc----------
Confidence 4578888999999975 4888888999887 57777664 44677777888876 799999987632111
Q ss_pred hhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCC------------CcccccCCCCCCEEcccCC
Q 045877 497 DYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDK------------LPDEIGKLKSLTHLDISEC 564 (801)
Q Consensus 497 ~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~------------lp~~~~~L~~L~~L~Ls~n 564 (801)
...|.++ +|+.+.+..+ ....-...+..+.+|+.+.+..+..... ....+.....+..+.+...
T Consensus 129 --~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (379)
T 4h09_A 129 --NYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPST 204 (379)
T ss_dssp --TTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTT
T ss_pred --ccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccc
Confidence 1234444 6777777653 4444446678888999888876432211 1112223333444433322
Q ss_pred ccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEe
Q 045877 565 FLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKV 644 (801)
Q Consensus 565 ~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L 644 (801)
. .......+....+|+.+. +..+. .......+..+.+|+.+.+..+ +.... ..+|.++.+|+.+.+
T Consensus 205 ~-~~i~~~~f~~~~~l~~i~---~~~~~-------~~i~~~~f~~~~~L~~i~lp~~-v~~I~--~~aF~~~~~l~~i~l 270 (379)
T 4h09_A 205 V-KTVTAYGFSYGKNLKKIT---ITSGV-------TTLGDGAFYGMKALDEIAIPKN-VTSIG--SFLLQNCTALKTLNF 270 (379)
T ss_dssp C-CEECTTTTTTCSSCSEEE---CCTTC-------CEECTTTTTTCSSCCEEEECTT-CCEEC--TTTTTTCTTCCEEEE
T ss_pred e-eEEeecccccccccceee---eccce-------eEEccccccCCccceEEEcCCC-ccEeC--ccccceeehhccccc
Confidence 1 112223344445555444 32222 1111234556666776666544 22222 345666666776666
Q ss_pred eccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCc
Q 045877 645 SWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGR 724 (801)
Q Consensus 645 ~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~ 724 (801)
..+ +... ......-+.+|+.+.+.++.+..++...+ .++.+|+.+.|..+
T Consensus 271 ~~~-i~~i---------------------------~~~aF~~c~~L~~i~l~~~~i~~I~~~aF-~~c~~L~~i~lp~~- 320 (379)
T 4h09_A 271 YAK-VKTV---------------------------PYLLCSGCSNLTKVVMDNSAIETLEPRVF-MDCVKLSSVTLPTA- 320 (379)
T ss_dssp CCC-CSEE---------------------------CTTTTTTCTTCCEEEECCTTCCEECTTTT-TTCTTCCEEECCTT-
T ss_pred ccc-ceec---------------------------cccccccccccccccccccccceehhhhh-cCCCCCCEEEcCcc-
Confidence 432 2111 11111223677788777766666666554 57778888887643
Q ss_pred CCCCCCCcc
Q 045877 725 LNSLEGSEW 733 (801)
Q Consensus 725 l~~~~~~~f 733 (801)
++.++...|
T Consensus 321 l~~I~~~aF 329 (379)
T 4h09_A 321 LKTIQVYAF 329 (379)
T ss_dssp CCEECTTTT
T ss_pred ccEEHHHHh
Confidence 566666555
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.01 E-value=6.8e-06 Score=84.19 Aligned_cols=82 Identities=22% Similarity=0.204 Sum_probs=45.9
Q ss_pred ccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCC--CCCEEeccCCCCCCC
Q 045877 468 SKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLT--SLEILDLRACYNLDK 545 (801)
Q Consensus 468 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~--~L~~L~Ls~n~~~~~ 545 (801)
.++++|+.|+|++|++++. ..++..+..+++|++|+|++|.+.+. ..+..+. +|++|+|++|.+.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l---------~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRL---------DDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDT 235 (267)
T ss_dssp HHCTTCCEEECTTSCCCCC---------GGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGG
T ss_pred hhCCCCCEEECCCCCCCCC---------ccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccc
Confidence 4556666666666666432 13344555666666666666644332 2233333 667777777665554
Q ss_pred Ccc-------cccCCCCCCEEc
Q 045877 546 LPD-------EIGKLKSLTHLD 560 (801)
Q Consensus 546 lp~-------~~~~L~~L~~L~ 560 (801)
+|. .+..+++|+.||
T Consensus 236 ~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 236 FRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CSSHHHHHHHHHHHCTTCCEES
T ss_pred cCcchhHHHHHHHHCcccCeEC
Confidence 442 245667777766
No 161
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.00 E-value=2.7e-06 Score=82.70 Aligned_cols=93 Identities=14% Similarity=0.004 Sum_probs=55.4
Q ss_pred hccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCcc----CchhhcCCCCCCEEec--cCC
Q 045877 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQE----LPSEISYLTSLEILDL--RAC 540 (801)
Q Consensus 467 f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~----lp~~i~~L~~L~~L~L--s~n 540 (801)
+...+.|++|+|++|.+.... ...+...+...++|++|+|++|.+... +...+...+.|++|+| ++|
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g-------~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPV-------AFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHH-------HHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS
T ss_pred HHhCCCcCEEECcCCCCChHH-------HHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 445566777777777763210 123445556667777777777754332 3455666677777777 666
Q ss_pred CCCCC----CcccccCCCCCCEEcccCCcc
Q 045877 541 YNLDK----LPDEIGKLKSLTHLDISECFL 566 (801)
Q Consensus 541 ~~~~~----lp~~~~~L~~L~~L~Ls~n~l 566 (801)
.+... +...+...+.|++|+|++|.+
T Consensus 134 ~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 134 PLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 44332 223344556777777777765
No 162
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.86 E-value=7e-06 Score=79.71 Aligned_cols=122 Identities=10% Similarity=-0.021 Sum_probs=91.6
Q ss_pred hhhhhhhhccccccccccch-hhcch----hhhhhccccCceeeecCCcccCCC----ChhhhccCCCCCEEEcCCcccC
Q 045877 414 QKAVEFEKIKKLFNFSLSLE-EIENK----AKDCAMKRGRIETLFNVSEEFPEF----KYDWFSKLEKIKVLYLGRWQST 484 (801)
Q Consensus 414 ~~~~~~~~l~~L~~L~Ls~N-~l~~~----~~~~~~~~~~L~~L~l~~n~i~~~----~~~~f~~l~~L~~L~Ls~n~l~ 484 (801)
..+.-+...++|++|+|++| .|... +...+...+.|++|++.+|.|... ....+...+.|++|+|++|.+.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34556677889999999999 88754 344455678999999999998652 2345667789999999999985
Q ss_pred CCCCCcccccchhhhHhhcCCcCCceEee--cCCCCCcc----CchhhcCCCCCCEEeccCCCC
Q 045877 485 VDDIPHIEIESTDYLKGLKNMKELRLLSL--QGMSGIQE----LPSEISYLTSLEILDLRACYN 542 (801)
Q Consensus 485 ~~~~~~~~~~~~~lp~~l~~l~~L~~L~L--s~n~~~~~----lp~~i~~L~~L~~L~Ls~n~~ 542 (801)
... ...+...+...++|++|+| ++|.+... +...+...+.|++|+|++|.+
T Consensus 107 ~~g-------~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 107 GSG-------ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHH-------HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHH-------HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 311 1245677888899999999 77765443 445566779999999999854
No 163
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.51 E-value=4.9e-05 Score=72.27 Aligned_cols=83 Identities=14% Similarity=0.119 Sum_probs=52.5
Q ss_pred CCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccC-chhhcCC----CCCCEEeccCCCCCCC-
Q 045877 472 KIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQEL-PSEISYL----TSLEILDLRACYNLDK- 545 (801)
Q Consensus 472 ~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~l-p~~i~~L----~~L~~L~Ls~n~~~~~- 545 (801)
.|+.|||++|.++.. . ...+..+++|++|+|++|..++.- -..++.+ ++|++|+|++|..++.
T Consensus 62 ~L~~LDLs~~~Itd~----------G-L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 62 KIQAIDATDSCIMSI----------G-FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CEEEEEEESCCCCGG----------G-GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred eEeEEeCcCCCccHH----------H-HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 578888888876432 1 244567888888888887544431 2345554 3688888888753322
Q ss_pred CcccccCCCCCCEEcccCCc
Q 045877 546 LPDEIGKLKSLTHLDISECF 565 (801)
Q Consensus 546 lp~~~~~L~~L~~L~Ls~n~ 565 (801)
--..+.++++|++|++++|.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHhcCCCCCEEECCCCC
Confidence 11345667788888888775
No 164
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.44 E-value=0.00016 Score=68.66 Aligned_cols=87 Identities=11% Similarity=0.171 Sum_probs=61.4
Q ss_pred CceeeecCCcccCCCChhhhccCCCCCEEEcCCcc-cCCCCCCcccccchhhhHhhcCC----cCCceEeecCCCCCcc-
Q 045877 448 RIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQ-STVDDIPHIEIESTDYLKGLKNM----KELRLLSLQGMSGIQE- 521 (801)
Q Consensus 448 ~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~lp~~l~~l----~~L~~L~Ls~n~~~~~- 521 (801)
+|+.|++++..+...--..+.+|++|+.|+|++|. ++. .-...+..+ ++|++|+|++|..++.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD-----------~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED-----------GCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH-----------HHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH-----------HHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 45666666655554444556889999999999996 431 223455554 4799999999975543
Q ss_pred CchhhcCCCCCCEEeccCCCCCCC
Q 045877 522 LPSEISYLTSLEILDLRACYNLDK 545 (801)
Q Consensus 522 lp~~i~~L~~L~~L~Ls~n~~~~~ 545 (801)
--..+.++++|++|+|++|..++.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHhcCCCCCEEECCCCCCCCc
Confidence 225678899999999999965543
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.99 E-value=0.022 Score=55.04 Aligned_cols=92 Identities=16% Similarity=0.097 Sum_probs=49.1
Q ss_pred hccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCcc----CchhhcCCCCCCEEeccCCCC
Q 045877 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQE----LPSEISYLTSLEILDLRACYN 542 (801)
Q Consensus 467 f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~----lp~~i~~L~~L~~L~Ls~n~~ 542 (801)
+..-+.|+.|+|++|.+... ....+-+.+..-+.|++|+|++|.+... +-+.+..=+.|++|+|++|..
T Consensus 66 L~~N~~L~~L~L~~n~igd~-------ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~ 138 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDS-------EARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ 138 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHH-------HHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred HhhCCCcCEEEccCCCCChH-------HHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcC
Confidence 34445577777777766311 1123445555566777777777644322 223344445577777765421
Q ss_pred --CC-----CCcccccCCCCCCEEcccCCc
Q 045877 543 --LD-----KLPDEIGKLKSLTHLDISECF 565 (801)
Q Consensus 543 --~~-----~lp~~~~~L~~L~~L~Ls~n~ 565 (801)
++ .+-..+..-+.|+.|+++.|.
T Consensus 139 ~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 139 SVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred cCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 12 122234444667777777664
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.70 E-value=0.014 Score=56.35 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=9.7
Q ss_pred hHhhcCCcCCceEeecCCC
Q 045877 499 LKGLKNMKELRLLSLQGMS 517 (801)
Q Consensus 499 p~~l~~l~~L~~L~Ls~n~ 517 (801)
-+.+..-.+|+.|+|++|.
T Consensus 63 a~aL~~N~~L~~L~L~~n~ 81 (197)
T 1pgv_A 63 IEAACNSKHIEKFSLANTA 81 (197)
T ss_dssp HHHHTTCSCCCEEECTTSC
T ss_pred HHHHhhCCCcCEEEccCCC
Confidence 3444444555555555553
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.07 E-value=0.055 Score=48.56 Aligned_cols=45 Identities=9% Similarity=0.014 Sum_probs=30.4
Q ss_pred ccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCC
Q 045877 681 ERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLN 726 (801)
Q Consensus 681 ~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~ 726 (801)
.+...+|.+|+.|+|++|.+..+|..++ ..+++|+.|+|.+|.+.
T Consensus 24 ~vP~~lp~~l~~L~Ls~N~l~~l~~~~f-~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 24 SLPTAFPVDTTELVLTGNNLTALPPGLL-DALPALRTAHLGANPWR 68 (130)
T ss_dssp TSCSCCCTTCSEEECTTSCCSSCCTTTG-GGCTTCCEEECCSSCCB
T ss_pred cCCCCCCcCCCEEECCCCcCCccChhhh-hhccccCEEEecCCCee
Confidence 3333456677777777777777776654 46777777777777653
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.92 E-value=0.048 Score=48.93 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=45.9
Q ss_pred cEEEccCCCCC--CCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccccc
Q 045877 691 EKLDFQCFPDE--KLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ 755 (801)
Q Consensus 691 ~~L~L~~n~~~--~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~ 755 (801)
..++.+++.++ .+|..+. ++|++|+|++|+|+.++...| -.+.+|+.|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp----~~l~~L~Ls~N~l~~l~~~~f-----~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP----VDTTELVLTGNNLTALPPGLL-----DALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC----TTCSEEECTTSCCSSCCTTTG-----GGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC----cCCCEEECCCCcCCccChhhh-----hhccccCEEEecCCCee
Confidence 46788888887 8997655 579999999999999999888 45567788888888775
No 169
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=56.39 E-value=3.4 Score=42.68 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=24.7
Q ss_pred HHHHcCCCcccccCCCChHHHHHHHHH-HHHhcCcccc
Q 045877 267 WWIGEGFLKERIQGENSAEKAADKLLR-EFEEKGFILP 303 (801)
Q Consensus 267 ~wia~g~i~~~~~~~~~~~~~~~~~~~-~L~~r~ll~~ 303 (801)
+-+..|++.....| ..+.+.|..||. ++++|+|||+
T Consensus 288 ~~i~~~li~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 288 YLIRQGLLKRTPRG-RVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHHTTSEEEETTE-EEECHHHHHHTTCCCCC------
T ss_pred HHHHhcchhcCCcc-ceecHHHHHHHhcCCCCCCCCCC
Confidence 45678999776655 788899999998 9999999985
No 170
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=33.13 E-value=27 Score=37.00 Aligned_cols=69 Identities=12% Similarity=0.078 Sum_probs=41.9
Q ss_pred HHHhhhccC-CCccccceecccC--CCceechhhHHHHHHH-c-CCCcccccCCCChHHHHHHHHHHHHhcCcccccc
Q 045877 233 FKKIFQSLG-NDQSCLLCFAVFP--ENAVIKKRLLVNWWIG-E-GFLKERIQGENSAEKAADKLLREFEEKGFILPVD 305 (801)
Q Consensus 233 L~~SYd~L~-~~K~cFl~~a~Fp--~~~~i~~~~Li~~wia-~-g~i~~~~~~~~~~~~~~~~~~~~L~~r~ll~~~~ 305 (801)
+.-.++.|+ +.|.++..++.+. .+..+...++...|.. . ..+... .........++++|++.++|....
T Consensus 299 ~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 299 QTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVK----PRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp -CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCC----CCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCC----CCCHHHHHHHHHHHHhCCCEEeec
Confidence 334567899 8898888888654 2334556666555532 1 111110 112345678899999999998654
No 171
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=31.42 E-value=72 Score=32.57 Aligned_cols=66 Identities=17% Similarity=0.312 Sum_probs=39.7
Q ss_pred C-CCccccceecccCCCceechhhHHHHHHHcCCCcccccCCCChHHHHHHHHHHHHhcCcccccccccCCccceEEe-c
Q 045877 241 G-NDQSCLLCFAVFPENAVIKKRLLVNWWIGEGFLKERIQGENSAEKAADKLLREFEEKGFILPVDKKHRGVANSFRM-S 318 (801)
Q Consensus 241 ~-~~K~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~~~~~~~L~~r~ll~~~~~~~~~~~~~~~m-H 318 (801)
+ ..+..+..+|+ + .+...++.....+.. - . .+ ......+++.|++.++|..... .|++ |
T Consensus 281 ~~~~~~~l~~la~---g-~~~~~~l~~~~~~~~-~-~-----~~-~~~~~~~l~~L~~~gli~~~~~-------~y~~~~ 341 (350)
T 2qen_A 281 SPRYVDILRAIAL---G-YNRWSLIRDYLAVKG-T-K-----IP-EPRLYALLENLKKMNWIVEEDN-------TYKIAD 341 (350)
T ss_dssp CHHHHHHHHHHHT---T-CCSHHHHHHHHHHTT-C-C-----CC-HHHHHHHHHHHHHTTSEEEETT-------EEEESS
T ss_pred ChhHHHHHHHHHh---C-CCCHHHHHHHHHHHh-C-C-----CC-HHHHHHHHHHHHhCCCEEecCC-------EEEEec
Confidence 6 78888888887 2 234455544432211 0 0 11 3456789999999999986521 4555 5
Q ss_pred hhHHHHH
Q 045877 319 PLVRSAV 325 (801)
Q Consensus 319 dlv~dl~ 325 (801)
.++++..
T Consensus 342 p~~~~~~ 348 (350)
T 2qen_A 342 PVVATVL 348 (350)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5777643
No 172
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.43 E-value=82 Score=26.03 Aligned_cols=24 Identities=8% Similarity=0.016 Sum_probs=13.7
Q ss_pred ccCCCChhhhccCCCCCEEEcCCc
Q 045877 458 EFPEFKYDWFSKLEKIKVLYLGRW 481 (801)
Q Consensus 458 ~i~~~~~~~f~~l~~L~~L~Ls~n 481 (801)
.+..+...+|.+|..|+.+.|..+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~ 30 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN 30 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc
Confidence 344555556666666666666544
No 173
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.78 E-value=35 Score=28.32 Aligned_cols=47 Identities=13% Similarity=-0.002 Sum_probs=37.6
Q ss_pred hhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCc
Q 045877 434 EIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRW 481 (801)
Q Consensus 434 ~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n 481 (801)
.++.+...+|.++..|+.+.+.. .+..+-..+|.+|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCC
Confidence 45566677888899999888754 467778889999999999998865
Done!