BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045879
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 88.6 bits (218), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 59/96 (61%)
Query: 1 LRKHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES 60
L K + HP+ KF TGN TLE RP +G+D R EL+KF++ +YSSNLM +VV +ES
Sbjct: 175 LEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRES 234
Query: 61 VDKIQGLVENKFQDIRNTDRNLFRFPGQPCTSEHLQ 96
+D + LV F ++ N + L FP P EHL+
Sbjct: 235 LDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLK 270
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 88.6 bits (218), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 59/96 (61%)
Query: 1 LRKHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES 60
L K + HP+ KF TGN TLE RP +G+D R EL+KF++ +YSSNLM +VV +ES
Sbjct: 175 LEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRES 234
Query: 61 VDKIQGLVENKFQDIRNTDRNLFRFPGQPCTSEHLQ 96
+D + LV F ++ N + L FP P EHL+
Sbjct: 235 LDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLK 270
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 88.6 bits (218), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 59/96 (61%)
Query: 1 LRKHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES 60
L K + HP+ KF TGN TLE RP +G+D R EL+KF++ +YSSNLM +VV +ES
Sbjct: 175 LEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRES 234
Query: 61 VDKIQGLVENKFQDIRNTDRNLFRFPGQPCTSEHLQ 96
+D + LV F ++ N + L FP P EHL+
Sbjct: 235 LDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLK 270
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 59/96 (61%)
Query: 1 LRKHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES 60
L K + HP+ KF TGN TLE RP +G+D R EL+KF++ +YSSNLM +VV +ES
Sbjct: 175 LEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRES 234
Query: 61 VDKIQGLVENKFQDIRNTDRNLFRFPGQPCTSEHLQ 96
+D + LV F ++ N + L FP P EHL+
Sbjct: 235 LDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLK 270
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 59/96 (61%)
Query: 1 LRKHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES 60
L K + HP+ KF TGN TLE RP +G+D R EL+KF++ +YSSNLM +VV +ES
Sbjct: 204 LEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRES 263
Query: 61 VDKIQGLVENKFQDIRNTDRNLFRFPGQPCTSEHLQ 96
+D + LV F ++ N + L FP P EHL+
Sbjct: 264 LDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLK 299
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 59/96 (61%)
Query: 1 LRKHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES 60
L K + HP+ KF TGN TLE RP +G+D R EL+KF++ +YSSNLM +VV +ES
Sbjct: 162 LEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRES 221
Query: 61 VDKIQGLVENKFQDIRNTDRNLFRFPGQPCTSEHLQ 96
+D + LV F ++ N + L FP P EHL+
Sbjct: 222 LDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLK 257
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 58/96 (60%)
Query: 1 LRKHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES 60
L K + HP+ KF TGN TLE RP +G+D R EL+KF++ +YSSNLM + V +ES
Sbjct: 175 LEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVCVLGRES 234
Query: 61 VDKIQGLVENKFQDIRNTDRNLFRFPGQPCTSEHLQ 96
+D + LV F ++ N + L FP P EHL+
Sbjct: 235 LDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLK 270
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 58/96 (60%)
Query: 1 LRKHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES 60
L K + HP+ KF TGN TLE RP +G+D R EL+KF++ +YSSNLM + V +ES
Sbjct: 175 LEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVCVLGRES 234
Query: 61 VDKIQGLVENKFQDIRNTDRNLFRFPGQPCTSEHLQ 96
+D + LV F ++ N + L FP P EHL+
Sbjct: 235 LDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLK 270
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
Length = 978
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 58/96 (60%)
Query: 1 LRKHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES 60
L K + HP+ KF TGN TLE RP +G+D R EL+KF++ +YSSNLM + V +ES
Sbjct: 163 LEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVREELLKFHSTYYSSNLMAICVLGRES 222
Query: 61 VDKIQGLVENKFQDIRNTDRNLFRFPGQPCTSEHLQ 96
+D + LV F ++ N + L FP P EHL+
Sbjct: 223 LDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLK 258
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 58/96 (60%)
Query: 1 LRKHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES 60
L K + HP+ KF TGN TLE RP +G+D R EL+KF++ +YSSNLM + V +ES
Sbjct: 204 LEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVREELLKFHSTYYSSNLMAICVLGRES 263
Query: 61 VDKIQGLVENKFQDIRNTDRNLFRFPGQPCTSEHLQ 96
+D + LV F ++ N + L FP P EHL+
Sbjct: 264 LDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLK 299
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
Two Bound Peptides
Length = 1019
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 58/96 (60%)
Query: 1 LRKHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES 60
L K + HP+ KF TGN TLE RP +G+D R EL+KF++ +YSSNLM + V +ES
Sbjct: 204 LEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVREELLKFHSTYYSSNLMAICVLGRES 263
Query: 61 VDKIQGLVENKFQDIRNTDRNLFRFPGQPCTSEHLQ 96
+D + LV F ++ N + L FP P EHL+
Sbjct: 264 LDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLK 299
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 10 HPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVE 69
HP KFS GN ETL +P G + L F+ ++YS+NLM V+YS + + ++ +
Sbjct: 170 HPGSKFSGGNLETLSDKP---GNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAA 226
Query: 70 NKFQDIRNTD 79
+ F + N +
Sbjct: 227 DTFGRVPNKE 236
>pdb|2FJU|B Chain B, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
pdb|2ZKM|X Chain X, Crystal Structure Of Phospholipase C Beta 2
Length = 799
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 28 KAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVE 69
KAK T+ L KF N+ + ++ +++ D++QGL++
Sbjct: 231 KAKPYMTKEHLTKFINQKQRDSRLNSLLFPPARPDQVQGLID 272
>pdb|1XCH|A Chain A, Myoglobin (Horse Heart) Mutant With Leu 104 Replaced By
Asn (L104n)
Length = 153
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 24 EVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVD---KIQGLVENKFQDIRN 77
E++P A+ T+H++ YNE S ++H V++SK D QG + + RN
Sbjct: 85 ELKPLAQSHATKHKIPIKYNEFISDAIIH-VLHSKHPGDFGADAQGAMTKALELFRN 140
>pdb|3QVE|A Chain A, Crystal Structure Of Human Hmg Box-Containing Protein 1,
Hbp1
pdb|3QVE|B Chain B, Crystal Structure Of Human Hmg Box-Containing Protein 1,
Hbp1
pdb|3QVE|C Chain C, Crystal Structure Of Human Hmg Box-Containing Protein 1,
Hbp1
Length = 139
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 12 YHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLV-----VYSKESVDKIQ- 65
+HK S W+ +E +A+G D +L ++ Y S+ + L+ V ESV K+
Sbjct: 20 FHKGSNKEWQDVEDFARAEGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTF 79
Query: 66 --GLVENKFQDIR 76
G VE+ +
Sbjct: 80 DPGTVEDGLLTVE 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,128,961
Number of Sequences: 62578
Number of extensions: 111448
Number of successful extensions: 354
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 339
Number of HSP's gapped (non-prelim): 16
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)