Query 045879
Match_columns 96
No_of_seqs 160 out of 1043
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 06:26:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045879.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045879hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0959 N-arginine dibasic con 99.8 4.5E-20 9.7E-25 148.9 6.8 94 1-96 168-261 (974)
2 COG1025 Ptr Secreted/periplasm 99.8 2.3E-19 5.1E-24 143.6 7.6 92 2-96 165-256 (937)
3 PRK15101 protease3; Provisiona 99.8 3.4E-19 7.3E-24 143.8 8.0 79 3-84 186-264 (961)
4 COG0612 PqqL Predicted Zn-depe 99.8 5.9E-19 1.3E-23 132.2 8.5 67 4-77 159-225 (438)
5 TIGR02110 PQQ_syn_pqqF coenzym 99.7 5.3E-18 1.2E-22 134.2 8.3 74 4-81 143-216 (696)
6 PTZ00432 falcilysin; Provision 99.5 1.7E-14 3.6E-19 119.1 6.1 66 5-78 267-332 (1119)
7 KOG0960 Mitochondrial processi 99.5 5.8E-14 1.2E-18 104.8 6.9 68 4-78 175-242 (467)
8 PF05193 Peptidase_M16_C: Pept 99.3 1.3E-11 2.8E-16 80.4 6.1 46 34-79 3-48 (184)
9 COG1026 Predicted Zn-dependent 98.8 1.2E-08 2.5E-13 83.2 7.5 70 3-79 175-245 (978)
10 PRK15101 protease3; Provisiona 98.8 3E-09 6.4E-14 86.5 3.8 63 7-77 664-726 (961)
11 KOG2067 Mitochondrial processi 98.7 4.9E-08 1.1E-12 73.5 6.1 70 5-82 167-236 (472)
12 KOG2019 Metalloendoprotease HM 98.7 6.8E-08 1.5E-12 77.0 6.6 73 4-83 212-284 (998)
13 KOG0961 Predicted Zn2+-depende 98.5 3.5E-07 7.5E-12 73.0 7.4 68 3-77 170-237 (1022)
14 KOG2583 Ubiquinol cytochrome c 92.7 0.46 1E-05 36.4 6.1 41 31-72 182-222 (429)
15 KOG0959 N-arginine dibasic con 84.3 3.7 8E-05 34.9 6.2 42 34-75 670-711 (974)
16 PRK05986 cob(I)alamin adenolsy 83.6 2 4.4E-05 29.6 3.8 38 30-69 130-167 (191)
17 TIGR00708 cobA cob(I)alamin ad 79.0 3.9 8.5E-05 27.8 3.9 38 30-69 112-149 (173)
18 PRK07414 cob(I)yrinic acid a,c 77.6 4.2 9.1E-05 27.8 3.7 37 30-68 130-166 (178)
19 KOG0071 GTP-binding ADP-ribosy 73.5 6.4 0.00014 26.6 3.6 42 34-75 70-111 (180)
20 cd00561 CobA_CobO_BtuR ATP:cor 72.2 7.5 0.00016 26.0 3.8 37 30-68 110-146 (159)
21 PF00719 Pyrophosphatase: Inor 71.7 8.7 0.00019 25.6 4.0 53 19-75 101-154 (156)
22 PF02572 CobA_CobO_BtuR: ATP:c 71.4 11 0.00025 25.5 4.6 37 30-68 111-147 (172)
23 cd00412 pyrophosphatase Inorga 63.9 23 0.00049 23.7 4.8 38 34-71 115-153 (155)
24 TIGR01159 DRP1 density-regulat 63.7 19 0.00042 24.5 4.5 42 34-76 116-166 (173)
25 smart00653 eIF2B_5 domain pres 60.8 38 0.00082 21.3 5.2 41 34-74 34-79 (110)
26 TIGR00311 aIF-2beta translatio 60.6 41 0.00089 21.9 5.4 41 34-74 52-96 (133)
27 PRK14532 adenylate kinase; Pro 60.4 26 0.00057 23.0 4.7 41 34-74 141-187 (188)
28 PRK14529 adenylate kinase; Pro 59.9 26 0.00056 24.6 4.7 40 34-73 170-223 (223)
29 PLN02373 soluble inorganic pyr 57.9 32 0.0007 23.7 4.8 42 34-75 137-178 (188)
30 PF12108 SF3a60_bindingd: Spli 56.4 9 0.00019 18.4 1.4 12 34-45 15-26 (28)
31 PF10941 DUF2620: Protein of u 55.9 17 0.00038 23.3 3.0 24 51-74 1-24 (117)
32 PRK01250 inorganic pyrophospha 55.8 38 0.00081 23.1 4.8 42 34-75 131-173 (176)
33 PRK03988 translation initiatio 55.2 54 0.0012 21.4 5.4 41 34-74 57-101 (138)
34 PRK09016 quinolinate phosphori 55.1 33 0.00072 25.4 4.8 35 34-70 238-272 (296)
35 COG0612 PqqL Predicted Zn-depe 55.0 21 0.00046 26.8 3.9 28 34-61 406-433 (438)
36 PRK02230 inorganic pyrophospha 54.8 35 0.00076 23.5 4.6 44 34-77 117-161 (184)
37 PRK00642 inorganic pyrophospha 54.5 32 0.0007 24.0 4.4 43 34-76 156-201 (205)
38 PRK07413 hypothetical protein; 53.8 21 0.00046 27.3 3.7 47 30-79 140-186 (382)
39 COG1025 Ptr Secreted/periplasm 53.1 36 0.00079 29.1 5.2 44 34-77 663-706 (937)
40 TIGR02648 rep_term_tus DNA rep 52.8 18 0.00039 26.8 3.1 56 11-77 156-212 (300)
41 PRK07413 hypothetical protein; 51.4 26 0.00057 26.8 3.9 37 30-68 320-357 (382)
42 PRK06978 nicotinate-nucleotide 51.0 42 0.00092 24.8 4.8 35 34-70 235-269 (294)
43 PRK08178 acetolactate synthase 50.1 11 0.00023 23.4 1.3 23 49-71 50-72 (96)
44 PF02680 DUF211: Uncharacteriz 49.4 18 0.00039 22.4 2.2 29 49-77 47-76 (95)
45 PRK13808 adenylate kinase; Pro 48.1 67 0.0014 24.1 5.5 34 45-78 164-197 (333)
46 PF01729 QRPTase_C: Quinolinat 47.8 31 0.00068 23.2 3.4 36 34-70 110-147 (169)
47 COG0157 NadC Nicotinate-nucleo 47.1 57 0.0012 24.0 4.9 37 34-70 218-254 (280)
48 cd06408 PB1_NoxR The PB1 domai 46.8 26 0.00057 21.2 2.7 29 45-73 8-36 (86)
49 PRK06559 nicotinate-nucleotide 46.7 54 0.0012 24.2 4.7 35 34-70 227-261 (290)
50 PF14237 DUF4339: Domain of un 45.9 21 0.00046 18.3 2.0 15 55-69 10-24 (45)
51 smart00444 GYF Contains conser 45.8 26 0.00056 19.2 2.4 32 33-64 16-47 (56)
52 PRK02260 S-ribosylhomocysteina 45.8 92 0.002 21.0 6.6 46 31-76 52-111 (158)
53 TIGR01360 aden_kin_iso1 adenyl 45.1 77 0.0017 20.4 5.0 39 35-73 142-186 (188)
54 PRK12336 translation initiatio 43.6 98 0.0021 21.4 5.5 41 34-74 53-97 (201)
55 PRK06543 nicotinate-nucleotide 43.5 65 0.0014 23.6 4.8 35 34-70 223-257 (281)
56 PRK08485 DNA polymerase III su 43.2 74 0.0016 22.4 4.8 39 34-72 12-50 (206)
57 PF05838 Glyco_hydro_108: Glyc 42.8 20 0.00043 21.4 1.7 25 20-51 39-64 (83)
58 PF14178 YppF: YppF-like prote 42.8 49 0.0011 18.7 3.2 31 34-72 20-50 (60)
59 PRK06106 nicotinate-nucleotide 42.7 72 0.0016 23.4 4.9 35 34-70 224-258 (281)
60 COG3113 Predicted NTP binding 42.6 51 0.0011 20.5 3.5 32 46-77 7-38 (99)
61 PF10490 CENP-F_C_Rb_bdg: Rb-b 42.2 13 0.00028 20.0 0.7 24 59-82 12-35 (49)
62 TIGR02572 LcrR type III secret 41.8 18 0.00038 23.9 1.5 32 13-49 83-114 (139)
63 COG1163 DRG Predicted GTPase [ 41.7 78 0.0017 24.2 5.0 38 34-72 200-237 (365)
64 PF10827 DUF2552: Protein of u 41.6 28 0.00061 20.5 2.1 54 4-75 19-75 (79)
65 PRK11152 ilvM acetolactate syn 41.3 19 0.00042 21.1 1.5 24 49-72 45-68 (76)
66 cd00072 GYF GYF domain: contai 41.2 49 0.0011 18.1 3.1 24 34-57 18-41 (57)
67 PF01170 UPF0020: Putative RNA 41.0 42 0.00091 22.4 3.3 47 9-65 113-159 (179)
68 PF11079 YqhG: Bacterial prote 40.1 25 0.00055 25.6 2.2 39 34-72 2-46 (260)
69 PF02213 GYF: GYF domain; Int 39.5 45 0.00097 18.1 2.7 26 33-58 16-41 (57)
70 cd00516 PRTase_typeII Phosphor 39.5 76 0.0017 22.5 4.6 25 45-69 234-258 (281)
71 PF07377 DUF1493: Protein of u 38.9 53 0.0011 20.3 3.3 42 34-75 4-55 (111)
72 PF10726 DUF2518: Protein of f 38.5 54 0.0012 21.8 3.4 32 48-79 80-111 (145)
73 PF07521 RMMBL: RNA-metabolisi 38.5 55 0.0012 16.7 2.8 27 30-58 15-41 (43)
74 PF14410 GH-E: HNH/ENDO VII su 38.1 23 0.00051 20.4 1.5 18 33-50 41-60 (70)
75 cd06405 PB1_Mekk2_3 The PB1 do 37.4 20 0.00044 21.3 1.1 26 45-70 40-65 (79)
76 KOG3239 Density-regulated prot 37.3 89 0.0019 21.6 4.3 47 31-78 126-180 (193)
77 PF13710 ACT_5: ACT domain; PD 37.1 26 0.00055 19.5 1.5 24 49-72 34-58 (63)
78 PF14060 DUF4252: Domain of un 37.1 36 0.00077 21.9 2.4 22 48-69 133-154 (155)
79 PRK00279 adk adenylate kinase; 36.7 1.2E+02 0.0026 20.5 5.1 30 44-73 184-213 (215)
80 PHA03169 hypothetical protein; 36.3 1.4E+02 0.003 23.1 5.6 65 7-80 278-352 (413)
81 COG2247 LytB Putative cell wal 36.2 59 0.0013 24.5 3.6 49 22-70 102-153 (337)
82 KOG1387 Glycosyltransferase [C 36.1 81 0.0017 24.5 4.4 52 9-73 49-102 (465)
83 PRK04968 SecY interacting prot 35.9 32 0.00068 23.7 2.0 59 13-74 53-117 (181)
84 smart00666 PB1 PB1 domain. Pho 35.6 48 0.001 18.7 2.6 28 46-73 8-35 (81)
85 PF00564 PB1: PB1 domain; Int 35.4 33 0.00072 19.5 1.9 30 46-75 8-38 (84)
86 PRK07896 nicotinate-nucleotide 35.2 1.3E+02 0.0028 22.2 5.2 37 34-70 229-266 (289)
87 PRK08385 nicotinate-nucleotide 34.9 1.2E+02 0.0025 22.2 4.9 37 34-70 212-251 (278)
88 PF07240 Turandot: Stress-indu 34.4 31 0.00067 20.9 1.6 15 34-48 11-25 (85)
89 PRK02496 adk adenylate kinase; 34.4 1.2E+02 0.0025 19.8 4.6 29 45-73 155-183 (184)
90 TIGR03738 PRTRC_C PRTRC system 34.3 29 0.00063 20.0 1.4 26 34-60 24-49 (66)
91 PF14285 DUF4367: Domain of un 34.3 59 0.0013 20.8 3.1 26 45-70 141-167 (168)
92 COG1105 FruK Fructose-1-phosph 34.1 1.4E+02 0.0029 22.4 5.2 39 34-73 115-157 (310)
93 PF05046 Img2: Mitochondrial l 34.1 69 0.0015 19.1 3.1 36 34-70 41-84 (87)
94 COG1888 Uncharacterized protei 33.6 62 0.0013 20.0 2.8 30 48-77 48-78 (97)
95 KOG0073 GTP-binding ADP-ribosy 33.5 98 0.0021 21.4 4.1 33 34-66 69-101 (185)
96 KOG2863 RNA lariat debranching 33.4 76 0.0016 24.6 3.8 40 34-77 57-101 (456)
97 cd05992 PB1 The PB1 domain is 32.9 94 0.002 17.4 3.6 30 45-74 6-36 (81)
98 PF04412 DUF521: Protein of un 32.5 1.9E+02 0.0042 22.3 6.0 40 34-73 271-314 (400)
99 cd01096 Alkanal_monooxygenase 32.3 1.4E+02 0.0031 21.5 5.1 44 14-69 270-313 (315)
100 KOG0098 GTPase Rab2, small G p 32.1 36 0.00079 23.9 1.9 16 44-59 105-120 (216)
101 PF08671 SinI: Anti-repressor 31.9 51 0.0011 15.9 1.9 14 30-44 15-28 (30)
102 PRK13562 acetolactate synthase 31.9 35 0.00075 20.6 1.5 22 49-70 44-67 (84)
103 PF05762 VWA_CoxE: VWA domain 31.6 1.7E+02 0.0036 20.2 5.2 31 29-59 127-159 (222)
104 COG1393 ArsC Arsenate reductas 31.6 1.4E+02 0.003 18.8 4.5 39 34-72 13-51 (117)
105 TIGR00246 tRNA_RlmH_YbeA rRNA 31.4 73 0.0016 21.1 3.2 28 50-77 1-28 (153)
106 PRK14530 adenylate kinase; Pro 31.3 1.5E+02 0.0032 20.1 4.8 39 35-73 168-212 (215)
107 COG1765 Predicted redox protei 31.2 65 0.0014 20.7 2.9 23 49-71 90-112 (137)
108 PF03284 PHZA_PHZB: Phenazine 31.0 32 0.0007 23.1 1.4 31 46-76 52-82 (162)
109 PF01152 Bac_globin: Bacterial 30.8 26 0.00057 21.5 0.9 43 35-78 13-55 (120)
110 PF14454 Prok_Ub: Prokaryotic 30.7 40 0.00087 19.3 1.6 25 34-59 25-49 (65)
111 cd06552 ASCH_yqfb_like ASC-1 h 30.4 1.1E+02 0.0025 18.0 3.8 26 30-55 68-95 (100)
112 cd00529 RuvC_resolvase Hollida 30.4 91 0.002 20.3 3.5 29 45-73 100-130 (154)
113 PF04536 TPM: TLP18.3, Psb32 a 30.3 1.1E+02 0.0024 18.3 3.8 42 35-78 11-52 (119)
114 PF05397 Med15_fungi: Mediator 30.3 66 0.0014 20.3 2.7 52 16-76 61-112 (115)
115 TIGR03395 sphingomy sphingomye 30.1 97 0.0021 22.3 3.9 29 34-62 161-189 (283)
116 PF01873 eIF-5_eIF-2B: Domain 30.0 46 0.001 21.4 2.0 41 34-74 47-92 (125)
117 PF07788 DUF1626: Protein of u 29.9 1.2E+02 0.0026 17.6 4.0 34 36-70 32-66 (70)
118 PTZ00432 falcilysin; Provision 29.8 1.1E+02 0.0023 26.8 4.6 43 34-76 855-898 (1119)
119 PF08987 DUF1892: Protein of u 29.8 1.4E+02 0.0031 19.0 4.1 45 31-76 47-107 (115)
120 PRK14527 adenylate kinase; Pro 29.8 80 0.0017 20.9 3.2 30 44-73 162-191 (191)
121 PRK06737 acetolactate synthase 29.3 34 0.00074 20.1 1.2 21 50-70 45-66 (76)
122 PTZ00323 NAD+ synthase; Provis 28.3 1.2E+02 0.0026 22.2 4.2 40 34-74 33-72 (294)
123 TIGR01126 pdi_dom protein disu 28.2 69 0.0015 18.2 2.5 23 48-70 78-100 (102)
124 PF00085 Thioredoxin: Thioredo 28.1 83 0.0018 17.8 2.8 26 46-71 78-103 (103)
125 PRK04182 cytidylate kinase; Pr 28.0 1.6E+02 0.0036 18.6 5.0 39 39-77 132-176 (180)
126 KOG1603 Copper chaperone [Inor 27.8 89 0.0019 17.6 2.8 23 48-70 39-61 (73)
127 PF14728 PHTB1_C: PTHB1 C-term 27.7 94 0.002 23.7 3.6 38 36-73 170-211 (377)
128 COG2109 BtuR ATP:corrinoid ade 27.6 1.8E+02 0.0039 20.4 4.6 37 31-69 138-174 (198)
129 PF08467 Luteo_P1-P2: Luteovir 27.5 77 0.0017 23.9 3.0 41 34-74 268-308 (361)
130 TIGR01334 modD putative molybd 27.3 2E+02 0.0044 21.0 5.1 37 34-70 218-255 (277)
131 PRK06096 molybdenum transport 27.2 1.6E+02 0.0034 21.7 4.5 37 34-70 219-256 (284)
132 PLN02674 adenylate kinase 27.2 89 0.0019 22.3 3.2 30 44-73 215-244 (244)
133 cd06396 PB1_NBR1 The PB1 domai 27.2 1E+02 0.0022 18.4 3.0 29 45-73 6-36 (81)
134 TIGR02057 PAPS_reductase phosp 27.1 2E+02 0.0044 20.0 5.0 38 34-72 12-49 (226)
135 PRK08084 DNA replication initi 26.8 88 0.0019 21.7 3.1 40 34-73 115-154 (235)
136 PF09621 LcrR: Type III secret 26.8 36 0.00078 22.5 1.1 32 13-49 83-114 (139)
137 PF02590 SPOUT_MTase: Predicte 26.6 63 0.0014 21.4 2.3 28 50-77 2-29 (155)
138 PF02664 LuxS: S-Ribosylhomocy 26.4 1.6E+02 0.0035 19.8 4.1 48 32-79 52-114 (157)
139 PF00385 Chromo: Chromo (CHRro 26.3 21 0.00045 18.9 -0.1 31 7-44 25-55 (55)
140 PRK14531 adenylate kinase; Pro 26.3 1.8E+02 0.0038 19.1 4.4 29 44-72 154-182 (183)
141 KOG2183 Prolylcarboxypeptidase 26.2 79 0.0017 25.0 2.9 73 6-78 122-194 (492)
142 PRK05848 nicotinate-nucleotide 26.2 1.9E+02 0.0041 21.0 4.8 37 34-70 212-249 (273)
143 PF01791 DeoC: DeoC/LacD famil 26.2 1.9E+02 0.004 20.0 4.7 38 35-72 178-215 (236)
144 TIGR01101 V_ATP_synt_F vacuola 25.9 1.5E+02 0.0031 18.8 3.7 39 34-72 44-82 (115)
145 COG0440 IlvH Acetolactate synt 25.8 69 0.0015 21.7 2.3 25 49-73 46-71 (163)
146 PLN02716 nicotinate-nucleotide 25.3 1.9E+02 0.0041 21.6 4.7 35 34-70 248-282 (308)
147 PRK08233 hypothetical protein; 25.3 1.9E+02 0.0041 18.4 5.1 25 49-73 152-176 (182)
148 PRK00103 rRNA large subunit me 25.1 97 0.0021 20.6 2.9 28 50-77 2-29 (157)
149 cd07055 BMC_like_2 Bacterial M 25.1 96 0.0021 17.6 2.5 21 47-69 34-55 (61)
150 PF02671 PAH: Paired amphipath 25.0 86 0.0019 16.0 2.2 20 57-76 17-36 (47)
151 PF13788 DUF4180: Domain of un 24.9 48 0.001 21.0 1.4 23 35-62 59-81 (113)
152 cd06404 PB1_aPKC PB1 domain is 24.9 1.3E+02 0.0028 18.1 3.1 36 43-78 4-39 (83)
153 PRK14526 adenylate kinase; Pro 24.8 1.1E+02 0.0024 21.0 3.3 30 44-73 179-208 (211)
154 COG3453 Uncharacterized protei 24.8 1.5E+02 0.0033 19.3 3.6 29 50-78 7-35 (130)
155 KOG0799 Branching enzyme [Carb 24.7 1.9E+02 0.0041 22.5 4.8 45 34-78 114-158 (439)
156 PRK12491 pyrroline-5-carboxyla 24.5 1.4E+02 0.0031 21.3 3.9 27 43-69 84-110 (272)
157 PLN00078 photosystem I reactio 24.4 55 0.0012 20.7 1.5 15 33-47 75-89 (122)
158 PRK02951 DNA replication termi 24.4 75 0.0016 23.7 2.5 51 14-75 169-219 (309)
159 PRK10240 undecaprenyl pyrophos 24.2 2.2E+02 0.0048 20.2 4.7 45 34-78 96-141 (229)
160 COG3443 Predicted periplasmic 24.2 1E+02 0.0022 21.2 2.9 28 31-58 63-90 (193)
161 PRK00698 tmk thymidylate kinas 24.2 2.1E+02 0.0046 18.6 4.8 40 35-74 162-202 (205)
162 cd01896 DRG The developmentall 24.0 1.8E+02 0.0039 20.1 4.3 35 34-69 137-171 (233)
163 COG4586 ABC-type uncharacteriz 23.9 1E+02 0.0022 23.1 3.0 38 34-72 191-228 (325)
164 cd02974 AhpF_NTD_N Alkyl hydro 23.6 1.8E+02 0.0039 17.5 4.1 40 34-73 6-45 (94)
165 TIGR01351 adk adenylate kinase 23.4 1.2E+02 0.0025 20.4 3.2 28 45-72 182-209 (210)
166 cd02951 SoxW SoxW family; SoxW 23.4 1.3E+02 0.0028 18.2 3.2 29 46-74 91-121 (125)
167 KOG0181 20S proteasome, regula 23.3 1.2E+02 0.0026 21.5 3.2 32 37-68 194-230 (233)
168 PF09279 EF-hand_like: Phospho 23.3 1.5E+02 0.0034 16.7 4.4 35 32-74 15-49 (83)
169 PRK05742 nicotinate-nucleotide 23.2 2.4E+02 0.0052 20.5 4.9 35 34-70 219-253 (277)
170 PRK14829 undecaprenyl pyrophos 23.2 2E+02 0.0043 20.5 4.4 45 34-78 117-162 (243)
171 PF07744 SPOC: SPOC domain; I 23.2 83 0.0018 19.0 2.2 25 47-71 35-59 (119)
172 PLN02200 adenylate kinase fami 23.2 2.2E+02 0.0048 19.8 4.6 31 45-75 195-225 (234)
173 smart00040 CSF2 Granulocyte-ma 23.2 2E+02 0.0043 18.4 3.8 54 15-76 65-118 (121)
174 COG3272 Uncharacterized conser 23.1 63 0.0014 21.8 1.7 12 34-45 24-35 (163)
175 PRK00876 nadE NAD synthetase; 23.0 1.8E+02 0.0039 21.7 4.3 40 34-73 19-58 (326)
176 cd03063 TRX_Fd_FDH_beta TRX-li 22.7 1.1E+02 0.0025 18.4 2.7 21 54-74 60-80 (92)
177 PRK12482 flagellar motor prote 22.5 30 0.00066 25.4 0.1 34 40-73 108-152 (287)
178 PF12674 Zn_ribbon_2: Putative 22.1 1.6E+02 0.0035 17.4 3.2 36 34-76 43-78 (81)
179 PF09873 DUF2100: Uncharacteri 21.7 2.6E+02 0.0057 19.8 4.6 39 34-73 166-205 (215)
180 smart00860 SMI1_KNR4 SMI1 / KN 21.5 39 0.00085 19.5 0.5 25 22-46 6-30 (129)
181 PRK06195 DNA polymerase III su 21.5 1.2E+02 0.0026 22.1 3.1 24 49-72 222-248 (309)
182 PF04237 YjbR: YjbR; InterPro 21.4 1.6E+02 0.0034 17.1 3.1 23 51-73 67-90 (92)
183 COG3870 Uncharacterized protei 21.3 1.4E+02 0.003 18.8 2.9 20 50-69 2-21 (109)
184 cd06407 PB1_NLP A PB1 domain i 21.0 1.2E+02 0.0026 17.9 2.5 29 45-73 6-34 (82)
185 TIGR00112 proC pyrroline-5-car 21.0 2E+02 0.0044 20.0 4.1 24 46-69 67-90 (245)
186 cd04910 ACT_AK-Ectoine_1 ACT d 20.9 1.3E+02 0.0028 17.3 2.5 28 45-72 36-64 (71)
187 TIGR01669 phage_XkdX phage unc 20.8 40 0.00088 17.7 0.4 35 34-68 5-41 (45)
188 PF10686 DUF2493: Protein of u 20.8 1.8E+02 0.0039 16.6 3.7 11 35-45 21-31 (71)
189 cd01571 NAPRTase_B Nicotinate 20.8 2.6E+02 0.0056 20.5 4.7 36 35-71 231-266 (302)
190 PF13499 EF-hand_7: EF-hand do 20.7 1.5E+02 0.0033 15.6 3.8 39 29-77 13-51 (66)
191 COG0221 Ppa Inorganic pyrophos 20.7 2.9E+02 0.0062 18.8 4.9 43 34-76 127-170 (171)
192 cd00027 BRCT Breast Cancer Sup 20.6 1.4E+02 0.003 15.1 3.2 28 50-77 1-31 (72)
193 PF12213 Dpoe2NT: DNA polymera 20.6 1.1E+02 0.0024 17.7 2.2 46 30-85 16-61 (73)
194 PF02603 Hpr_kinase_N: HPr Ser 20.6 1.8E+02 0.0038 18.3 3.4 54 10-70 47-103 (127)
195 COG1606 ATP-utilizing enzymes 20.6 2.5E+02 0.0055 20.6 4.4 37 34-73 6-42 (269)
196 PF11964 SpoIIAA-like: SpoIIAA 20.5 1.2E+02 0.0026 17.8 2.5 22 50-71 2-23 (109)
197 TIGR01359 UMP_CMP_kin_fam UMP- 20.1 1.6E+02 0.0035 19.0 3.3 28 45-72 155-182 (183)
No 1
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.5e-20 Score=148.88 Aligned_cols=94 Identities=46% Similarity=0.711 Sum_probs=88.3
Q ss_pred CccccCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCCC
Q 045879 1 LRKHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDR 80 (96)
Q Consensus 1 l~~~~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~ 80 (96)
|.++++.++|||+||.+||.+||...|..+ ++++.|++||++||++++|+|||+|+.++|.++.++.+.|+.+++...
T Consensus 168 l~~~l~~~~hp~~kF~tGN~~tL~~~p~~~--~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~~~F~~i~N~~~ 245 (974)
T KOG0959|consen 168 LLRSLSNPGHPYSKFSTGNKKTLLEGPREI--DLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNKKK 245 (974)
T ss_pred HHHHhcCCCCcchhccccchhhhhhccccc--hHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHHHHcccccccCC
Confidence 356789999999999999999999998877 789999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCC
Q 045879 81 NLFRFPGQPCTSEHLQ 96 (96)
Q Consensus 81 ~~~~~~~~~~~~~~~~ 96 (96)
+.|.|+.+||.+++++
T Consensus 246 ~~p~f~~~p~~~e~~~ 261 (974)
T KOG0959|consen 246 PRPVFPEPPFLPEELK 261 (974)
T ss_pred CCCcccCCCCChHHhC
Confidence 9999999999998764
No 2
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.3e-19 Score=143.60 Aligned_cols=92 Identities=38% Similarity=0.604 Sum_probs=84.3
Q ss_pred ccccCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCCCC
Q 045879 2 RKHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDRN 81 (96)
Q Consensus 2 ~~~~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~ 81 (96)
.+.+++++||++||.+||.+||...| |+..+++|++||++||+|+||++||.|+.+++++.+|+.++||++|++...
T Consensus 165 ~~~~~np~HP~srFs~GN~~TL~~~p---~~~v~~el~ef~~~~YSa~~M~lviyg~q~ldeL~~~a~~~F~~Ipn~~~~ 241 (937)
T COG1025 165 QALTANPGHPLSKFSTGNLETLSDKP---GLVVQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADLFGDIPNRARK 241 (937)
T ss_pred HHhhcCCCCCccccCCCChhhhccCC---CchHHHHHHHHHHHhcChhheEEEEecCCCHHHHHHHHHHHhCcCCCCCCC
Confidence 45789999999999999999999987 455999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCC
Q 045879 82 LFRFPGQPCTSEHLQ 96 (96)
Q Consensus 82 ~~~~~~~~~~~~~~~ 96 (96)
.+..+.|++++++.+
T Consensus 242 ~p~~p~p~~~d~~t~ 256 (937)
T COG1025 242 IPPIPVPVVTDEQTG 256 (937)
T ss_pred CCCCCCCCCChHHhC
Confidence 888888888877643
No 3
>PRK15101 protease3; Provisional
Probab=99.78 E-value=3.4e-19 Score=143.78 Aligned_cols=79 Identities=30% Similarity=0.557 Sum_probs=69.7
Q ss_pred cccCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCCCCC
Q 045879 3 KHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDRNL 82 (96)
Q Consensus 3 ~~~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~ 82 (96)
+.+++++|||+++++||.++|..++.. .++++|++||++||+|+||+|+|+|++++++++++++++|++|+++..+.
T Consensus 186 ~~~~~~~hp~~~~~~G~~etl~~~~~~---~~~~~L~~f~~~~Y~p~nm~lvv~G~~~~~~l~~~~~~~F~~~~~~~~~~ 262 (961)
T PRK15101 186 AETINPAHPGSRFSGGNLETLSDKPGS---KLQDALVDFYQRYYSANLMKAVIYSNQPLPELAKLAADTFGRVPNKNASV 262 (961)
T ss_pred HhhCCCCCCcccCCCCCHHHhhcCCch---HHHHHHHHHHHHhCcccceEEEEEcCCCHHHHHHHHHHHhccCCCCCCCC
Confidence 356789999999999999999997432 27999999999999999999999999999999999999999999876543
Q ss_pred CC
Q 045879 83 FR 84 (96)
Q Consensus 83 ~~ 84 (96)
+.
T Consensus 263 ~~ 264 (961)
T PRK15101 263 PE 264 (961)
T ss_pred CC
Confidence 33
No 4
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=99.78 E-value=5.9e-19 Score=132.23 Aligned_cols=67 Identities=28% Similarity=0.456 Sum_probs=64.4
Q ss_pred ccCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccC
Q 045879 4 HLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 4 ~~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~ 77 (96)
..++++|||+++++|++++|.++ ++++|++||++||+|+||+|+|+|+++.+++.++++++|++|+.
T Consensus 159 ~~~~~~~p~~~~~~G~~e~I~~i-------t~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f~~~~~ 225 (438)
T COG0612 159 EALYGNHPLGRPILGTEESIEAI-------TREDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPG 225 (438)
T ss_pred HHhhccCCCCCCCCCCHHHHHhC-------CHHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHHHccCCc
Confidence 34678999999999999999998 99999999999999999999999999999999999999999997
No 5
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.74 E-value=5.3e-18 Score=134.16 Aligned_cols=74 Identities=19% Similarity=0.334 Sum_probs=65.9
Q ss_pred ccCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCCCC
Q 045879 4 HLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDRN 81 (96)
Q Consensus 4 ~~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~ 81 (96)
..++++|||+++++|++++|..+.. .++++|++||++||+|+||+|+|+|+++.++++++++++|+.|+++..+
T Consensus 143 ~~l~~~HPy~~~~iGt~esL~~it~----~t~edL~~F~~~~Y~p~NmvLvIvGdvs~eel~~l~e~~f~~~~~~~~~ 216 (696)
T TIGR02110 143 DALQAGHPLRRFHAGSRDSLALPNT----AFQQALRDFHRRHYQAGNMQLWLQGPQSLDELEQLAARFGASLAAGGEC 216 (696)
T ss_pred HHcCCCCCCCCCCCCCHHHHhCccc----chHHHHHHHHHHhcchhcEEEEEEeCCCHHHHHHHHHHHhCCCCCCCCC
Confidence 3577999999999999999997611 1599999999999999999999999999999999999999999876544
No 6
>PTZ00432 falcilysin; Provisional
Probab=99.52 E-value=1.7e-14 Score=119.11 Aligned_cols=66 Identities=21% Similarity=0.265 Sum_probs=62.3
Q ss_pred cCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCC
Q 045879 5 LSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNT 78 (96)
Q Consensus 5 ~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~ 78 (96)
.++ +|||++++.|++++|..+ ++++|++||++||+|+||+|+|+|+++++++.++++++|+.+++.
T Consensus 267 ~lf-~~pY~~~~~G~~~~I~~l-------t~e~l~~Fh~~~Y~P~N~~l~v~Gdid~~~~l~~l~~~f~~~~~~ 332 (1119)
T PTZ00432 267 NLF-SNVYKYDSGGDPKDIVEL-------TYEELVEFYKTYYGPKTATVYFYGPNDVTERLEFVDNYLTKHPKT 332 (1119)
T ss_pred HHh-CCCCCCCCCCChHhhccC-------CHHHHHHHHHHhcCccceEEEEEcCCCHHHHHHHHHHHHhhcccc
Confidence 355 999999999999999998 999999999999999999999999999999999999999888765
No 7
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=5.8e-14 Score=104.78 Aligned_cols=68 Identities=21% Similarity=0.314 Sum_probs=64.7
Q ss_pred ccCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCC
Q 045879 4 HLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNT 78 (96)
Q Consensus 4 ~~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~ 78 (96)
++.|+++|+|+.++|..++|+++ +++||.+|-+.||.++||+|+.+|.++++++.++++++|++++..
T Consensus 175 atafQgtPL~~tilGp~enI~si-------~r~DL~~yi~thY~~~RmVlaaaGgV~He~lv~la~k~fg~~~~~ 242 (467)
T KOG0960|consen 175 ATAFQGTPLGRTILGPSENIKSI-------SRADLKDYINTHYKASRMVLAAAGGVKHEELVKLAEKYFGDLSKL 242 (467)
T ss_pred HHHhcCCcccccccChhhhhhhh-------hHHHHHHHHHhcccCccEEEEecCCcCHHHHHHHHHHHcCCCccc
Confidence 46789999999999999999998 999999999999999999999999999999999999999998753
No 8
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=99.26 E-value=1.3e-11 Score=80.45 Aligned_cols=46 Identities=26% Similarity=0.489 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCC
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTD 79 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~ 79 (96)
+.++|++||++||+|+||+++|+|+++.++++++|+++|+.|+...
T Consensus 3 t~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~~ 48 (184)
T PF05193_consen 3 TLEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIEKYFGSLPKSS 48 (184)
T ss_dssp -HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHHHHHTTSSHSC
T ss_pred CHHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHHhhhhhhcccc
Confidence 8999999999999999999999999999999999999999998654
No 9
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=98.83 E-value=1.2e-08 Score=83.20 Aligned_cols=70 Identities=17% Similarity=0.294 Sum_probs=61.7
Q ss_pred cccCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHH-hhcccCCC
Q 045879 3 KHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENK-FQDIRNTD 79 (96)
Q Consensus 3 ~~~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~-f~~~~~~~ 79 (96)
++.++|+.-|+...-|.++.|..+ +.|++++||++||+|+||.+.+.|+++.+++.+.+++. +.......
T Consensus 175 ~~slfp~~ty~~~SGG~P~~I~~L-------tyE~~r~FHkk~Y~pSN~~i~~yGni~~~~~L~~iee~~l~~~~k~~ 245 (978)
T COG1026 175 QQSLFPGTTYGVNSGGDPKNIPDL-------TYEEFRAFHKKHYHPSNCKIFVYGNIPTERLLDFIEEKVLRPFGKRE 245 (978)
T ss_pred HHhhCCCccccccCCCCccccccc-------CHHHHHHHHHHhCCccceEEEEECCCCHHHHHHHHHHhhhccccccc
Confidence 345788899999899999999888 99999999999999999999999999999999999887 66655544
No 10
>PRK15101 protease3; Provisional
Probab=98.82 E-value=3e-09 Score=86.48 Aligned_cols=63 Identities=11% Similarity=0.188 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccC
Q 045879 7 SEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 7 ~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~ 77 (96)
+.+|||+.. .|..++|+++ ++++|++||+++|.+.|++++|+||++.+++.++++++++.++.
T Consensus 664 ~~~~py~~~-~~~~~~l~~i-------t~edl~~f~~~~~~~~~~~~~v~GNi~~~ea~~l~~~~~~~l~~ 726 (961)
T PRK15101 664 LSQVPYFER-DERRKLLPSI-------TLKDVLAYRDALLSGATPEFLVVGNLTEEQVTTLARDVQKQLGA 726 (961)
T ss_pred HhcCCCCCH-HHHHHHHhcC-------CHHHHHHHHHHHHHhceEEEEEEcCCCHHHHHHHHHHHHHHhcc
Confidence 468999975 7889999998 99999999999999999999999999999999999999988864
No 11
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=4.9e-08 Score=73.52 Aligned_cols=70 Identities=13% Similarity=0.095 Sum_probs=62.5
Q ss_pred cCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCCCCC
Q 045879 5 LSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDRNL 82 (96)
Q Consensus 5 ~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~ 82 (96)
..|.+..+|.+..+..+.|..| +++.|.+|-+++|+|++|+++-+| ++++++.+.++++|++|++...|.
T Consensus 167 Aay~~ntlg~pl~cp~~~i~~I-------~~~~l~~yl~~~ytp~rmVlA~vG-V~heelv~~~~~~~~~~~s~~~p~ 236 (472)
T KOG2067|consen 167 AAYSGNTLGLPLLCPEENIDKI-------NREVLEEYLKYFYTPERMVLAGVG-VEHEELVEIAEKLLGDLPSTKVPP 236 (472)
T ss_pred HHhccCcccccccCChhhhhhh-------hHHHHHHHHHhcCChhheEeeecC-CCHHHHHHHHHHHhccCCccCCCC
Confidence 4567788888889988999998 999999999999999999999988 677999999999999999965544
No 12
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=6.8e-08 Score=76.95 Aligned_cols=73 Identities=16% Similarity=0.223 Sum_probs=64.3
Q ss_pred ccCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCCCCCC
Q 045879 4 HLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDRNLF 83 (96)
Q Consensus 4 ~~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~ 83 (96)
+.++|+|-||-..-|.+-.|-.+ +.+++++||++||+|+|+.+.-.|++++++....+++-|+.......+.+
T Consensus 212 q~L~p~~tYgv~SGGDPl~IpdL-------t~eelk~FHr~~YHPSNAri~tYGn~Pl~~~l~~l~e~~~~~sk~~~s~k 284 (998)
T KOG2019|consen 212 QALFPENTYGVNSGGDPLDIPDL-------TYEELKEFHRQHYHPSNARIFTYGNFPLEDLLKQLEEDFSPFSKRELSSK 284 (998)
T ss_pred HhhCccccccccCCCCcccCccc-------cHHHHHHHHHhccCCCcceeEeecCchHHHHHHHHHHhhcccccccccCc
Confidence 45678999999999998888887 99999999999999999999999999999999999988887766555443
No 13
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3.5e-07 Score=73.01 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=58.5
Q ss_pred cccCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccC
Q 045879 3 KHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 3 ~~~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~ 77 (96)
+.++.+..+|..-.-|-.+.|+.. +.+.+|+||++.|+++||++.|+|.++.+++....+..-..++.
T Consensus 170 ~~~yP~~sgY~~eTGG~~knLR~l-------t~ekIR~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile 237 (1022)
T KOG0961|consen 170 EVIYPPFSGYAVETGGRLKNLREL-------TLEKIRDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILE 237 (1022)
T ss_pred eeecCCCCCceeccCCChhhHHHh-------hHHHHHHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhh
Confidence 345667789998888988999987 99999999999999999999999999999999887766654443
No 14
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=92.74 E-value=0.46 Score=36.43 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=35.1
Q ss_pred CcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHh
Q 045879 31 GLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKF 72 (96)
Q Consensus 31 ~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f 72 (96)
|-.+.++|.+|-+++|...||+|+-+| ++++.+...+++++
T Consensus 182 g~vss~eL~~Fa~k~fv~gn~~lvg~n-vd~~~L~~~~~~~~ 222 (429)
T KOG2583|consen 182 GSVSSSELKDFAAKHFVKGNAVLVGVN-VDHDDLKQFADEYA 222 (429)
T ss_pred cCccHHHHHHHHHHHhhccceEEEecC-CChHHHHHHHHHhc
Confidence 334899999999999999999988775 56699999999984
No 15
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=84.35 E-value=3.7 Score=34.93 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcc
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDI 75 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~ 75 (96)
+.+++..|-....++--|.+.|+||++.+++.++++.....+
T Consensus 670 ~le~~~~F~~~~~~~~~~e~~i~GN~te~~A~~l~~~v~d~l 711 (974)
T KOG0959|consen 670 TLEDLESFISEFLQPFHLELLIHGNLTEKEALQLLKSVLDIL 711 (974)
T ss_pred cHHHHHHHHHHHhhhhheEEEEecCcchHHHHHHHHHHHhhh
Confidence 899999999999999999999999999999999876666655
No 16
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=83.64 E-value=2 Score=29.65 Aligned_cols=38 Identities=13% Similarity=0.254 Sum_probs=33.3
Q ss_pred CCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHH
Q 045879 30 KGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVE 69 (96)
Q Consensus 30 ~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~ 69 (96)
.|+.+.+++.++.+. .|.++.|+++|.-..+++.+++.
T Consensus 130 ~gli~~eevi~~L~~--rp~~~evVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 130 YGYLDVEEVLEALNA--RPGMQHVVITGRGAPRELIEAAD 167 (191)
T ss_pred CCCccHHHHHHHHHc--CCCCCEEEEECCCCCHHHHHhCc
Confidence 467789999999975 99999999999999899988763
No 17
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=79.02 E-value=3.9 Score=27.79 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=32.8
Q ss_pred CCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHH
Q 045879 30 KGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVE 69 (96)
Q Consensus 30 ~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~ 69 (96)
-|+.+.+++.++.+. .|.+|-|+++|.-..+++.+++.
T Consensus 112 ~gli~~~~v~~lL~~--rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 112 YGYLDVEEVVEALQE--RPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CCCcCHHHHHHHHHh--CCCCCEEEEECCCCCHHHHHhCc
Confidence 466789999999975 99999999999988899988763
No 18
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=77.61 E-value=4.2 Score=27.83 Aligned_cols=37 Identities=14% Similarity=0.324 Sum_probs=30.8
Q ss_pred CCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHH
Q 045879 30 KGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLV 68 (96)
Q Consensus 30 ~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v 68 (96)
-|+.+.+++.++-++ .|.++.|++.|+-..+++.+++
T Consensus 130 ~gli~~eeVl~~L~~--rp~~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 130 FGLIPETEVLEFLEK--RPSHVDVILTGPEMPESLLAIA 166 (178)
T ss_pred CCCccHHHHHHHHHh--CCCCCEEEEECCCCCHHHHHhC
Confidence 466788899998886 7999999999998888888765
No 19
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.50 E-value=6.4 Score=26.55 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=33.2
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcc
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDI 75 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~ 75 (96)
-.+.++.+|++||......|+|+-.-+.+.+++.=+++.+-+
T Consensus 70 Gqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii 111 (180)
T KOG0071|consen 70 GQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRII 111 (180)
T ss_pred CchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHh
Confidence 478899999999999999999988877777766655554433
No 20
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=72.18 E-value=7.5 Score=26.00 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=29.2
Q ss_pred CCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHH
Q 045879 30 KGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLV 68 (96)
Q Consensus 30 ~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v 68 (96)
-|+...+++.++-++ .|.++.|+++|+-..+++.+++
T Consensus 110 ~gli~~~~v~~ll~~--rp~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 110 YGLLDVEEVVDLLKA--KPEDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred CCCCCHHHHHHHHHc--CCCCCEEEEECCCCCHHHHHhC
Confidence 355678888888875 7788899999988888888765
No 21
>PF00719 Pyrophosphatase: Inorganic pyrophosphatase; InterPro: IPR008162 Inorganic pyrophosphatase (3.6.1.1 from EC) (PPase) [, ] is the enzyme responsible for the hydrolysis of pyrophosphate (PPi) which is formed principally as the product of the many biosynthetic reactions that utilise ATP. All known PPases require the presence of divalent metal cations, with magnesium conferring the highest activity. Among other residues, a lysine has been postulated to be part of or close to the active site. PPases have been sequenced from bacteria such as Escherichia coli (homohexamer), Bacillus PS3 (Thermophilic bacterium PS-3) and Thermus thermophilus, from the archaebacteria Thermoplasma acidophilum, from fungi (homodimer), from a plant, and from bovine retina. In yeast, a mitochondrial isoform of PPase has been characterised which seems to be involved in energy production and whose activity is stimulated by uncouplers of ATP synthesis. The sequences of PPases share some regions of similarities, among which is a region that contains three conserved aspartates that are involved in the binding of cations.; GO: 0000287 magnesium ion binding, 0004427 inorganic diphosphatase activity, 0006796 phosphate-containing compound metabolic process, 0005737 cytoplasm; PDB: 2UXS_A 1WCF_A 1SXV_A 3I4Q_A 2PRD_A 2IHP_B 1PYP_A 2IK7_A 2IK4_A 1E9G_A ....
Probab=71.70 E-value=8.7 Score=25.64 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=42.4
Q ss_pred CHhhhccccccCCcchHHHHHHHHHhhcCC-CCcEEEEEcCCCHHHHHHHHHHHhhcc
Q 045879 19 NWETLEVRPKAKGLDTRHELIKFYNEHYSS-NLMHLVVYSKESVDKIQGLVENKFQDI 75 (96)
Q Consensus 19 ~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~-~~~~l~v~G~~~~~~l~~~v~~~f~~~ 75 (96)
+.++|..++.. ..+++++||+.|=.. .+-.+.+-|-.+.+++.+.|++.-..|
T Consensus 101 ~i~dl~dl~~~----~~~~i~~fF~~YK~l~~~k~~~~~~~~~~~~A~~~i~~~~~~y 154 (156)
T PF00719_consen 101 DIKDLEDLPPH----LLDEIEHFFRNYKDLEENKWVEVGGWEDAEEALKVIKEAHERY 154 (156)
T ss_dssp THHSGGGSSHH----HHHHHHHHHHHTTTTSTTEEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CcCcHHHhChh----HHHHHHHHHHHhcCcCCCCeEEeCCCcCHHHHHHHHHHHHHHh
Confidence 56667776553 799999999877777 789999999999999999988765543
No 22
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=71.40 E-value=11 Score=25.49 Aligned_cols=37 Identities=11% Similarity=0.297 Sum_probs=26.3
Q ss_pred CCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHH
Q 045879 30 KGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLV 68 (96)
Q Consensus 30 ~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v 68 (96)
.|+.+.+++.++-++ .|..+-|+++|.-..+++.+++
T Consensus 111 ~gll~~~~v~~~l~~--rp~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 111 YGLLSEEEVLDLLEN--RPESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp TTSS-HHHHHHHHHT--S-TT-EEEEE-SS--HHHHHH-
T ss_pred CCCccHHHHHHHHHc--CCCCeEEEEECCCCCHHHHHhC
Confidence 467799999999985 7999999999999989998876
No 23
>cd00412 pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Probab=63.92 E-value=23 Score=23.70 Aligned_cols=38 Identities=8% Similarity=0.103 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhhcCCCC-cEEEEEcCCCHHHHHHHHHHH
Q 045879 34 TRHELIKFYNEHYSSNL-MHLVVYSKESVDKIQGLVENK 71 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~-~~l~v~G~~~~~~l~~~v~~~ 71 (96)
..+++.+||+.|=.... =.+-+.|-.+.+++.+.|++.
T Consensus 115 ~l~~I~~fF~~YK~le~~k~~~~~g~~~~~~A~~~I~~~ 153 (155)
T cd00412 115 LLDEIKHFFEHYKDLEGKKEVKVAGWKDKEEALKIIKES 153 (155)
T ss_pred HHHHHHHHHHHhcccCCCCceEECcCcCHHHHHHHHHHH
Confidence 89999999987766664 456677889999999988764
No 24
>TIGR01159 DRP1 density-regulated protein DRP1. This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
Probab=63.67 E-value=19 Score=24.54 Aligned_cols=42 Identities=12% Similarity=0.328 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhhcCCC---------CcEEEEEcCCCHHHHHHHHHHHhhccc
Q 045879 34 TRHELIKFYNEHYSSN---------LMHLVVYSKESVDKIQGLVENKFQDIR 76 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~---------~~~l~v~G~~~~~~l~~~v~~~f~~~~ 76 (96)
..+++-.++++-+..+ .-.|.|+||+. +++.+++.+.+..++
T Consensus 116 dlk~laK~lkkkfacG~SV~k~~~~~~eI~IQGD~~-~~v~e~L~~~~~~v~ 166 (173)
T TIGR01159 116 DLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVM-DDIEDYIHEKWPEVG 166 (173)
T ss_pred CHHHHHHHHHHHhCCCCccccCCCCCCEEEecCCHH-HHHHHHHHHHcCCCC
Confidence 4666666666666444 67899999999 778888888775444
No 25
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=60.75 E-value=38 Score=21.29 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=33.8
Q ss_pred hHHHHHHHHHhhcCCC-----CcEEEEEcCCCHHHHHHHHHHHhhc
Q 045879 34 TRHELIKFYNEHYSSN-----LMHLVVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~-----~~~l~v~G~~~~~~l~~~v~~~f~~ 74 (96)
..+.+.+|+..-.... +-.++|.|.++.+++++.+.+|...
T Consensus 34 ~p~hv~kyl~~ELgt~g~id~~~rlii~G~~~~~~i~~~l~~yI~~ 79 (110)
T smart00653 34 PPDHVLKFLLAELGTQGSIDGKGRLIVNGRFTPKKLQDLLRRYIKE 79 (110)
T ss_pred CHHHHHHHHHHHhCCceeECCCCeEEEEEeeCHHHHHHHHHHHHHh
Confidence 5788888988765432 2689999999999999999999876
No 26
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=60.55 E-value=41 Score=21.89 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhhcCC----CCcEEEEEcCCCHHHHHHHHHHHhhc
Q 045879 34 TRHELIKFYNEHYSS----NLMHLVVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~----~~~~l~v~G~~~~~~l~~~v~~~f~~ 74 (96)
..+.+.+|+..-... ++-.++|.|.++..++++.+++|...
T Consensus 52 ~~~~v~ky~~~ELgt~g~i~~~rlii~G~~~~~~i~~~L~~yI~~ 96 (133)
T TIGR00311 52 DEQHLLKYLLKELGTAGNLEGGRLILQGKFTHFLLNERIEDYVRK 96 (133)
T ss_pred CHHHHHHHHHHHhCCCceecCCEEEEEeecCHHHHHHHHHHHHhh
Confidence 467788888876654 34589999999999999999999865
No 27
>PRK14532 adenylate kinase; Provisional
Probab=60.36 E-value=26 Score=23.04 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=30.3
Q ss_pred hHHHHHHHHH------hhcCCCCcEEEEEcCCCHHHHHHHHHHHhhc
Q 045879 34 TRHELIKFYN------EHYSSNLMHLVVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 34 ~~~~l~~f~~------~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~ 74 (96)
.++.+..||+ ++|.....++.|-|..+.+++.+.|.+.+.+
T Consensus 141 ~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 187 (188)
T PRK14532 141 FVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAALEG 187 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 3556677764 3566566788899999999999888877653
No 28
>PRK14529 adenylate kinase; Provisional
Probab=59.90 E-value=26 Score=24.63 Aligned_cols=40 Identities=10% Similarity=0.238 Sum_probs=32.5
Q ss_pred hHHHHHHHHHh---------hcCC-----CCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 34 TRHELIKFYNE---------HYSS-----NLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 34 ~~~~l~~f~~~---------~Y~~-----~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
.+..|..|+++ ||.. .++.+.|-|.-+.+++.+.|.+.++
T Consensus 170 i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l~ 223 (223)
T PRK14529 170 INKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQLS 223 (223)
T ss_pred HHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHhC
Confidence 46678889875 8884 6789999999999999888877653
No 29
>PLN02373 soluble inorganic pyrophosphatase
Probab=57.87 E-value=32 Score=23.74 Aligned_cols=42 Identities=7% Similarity=0.086 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcc
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDI 75 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~ 75 (96)
..+++.+||+.|=...+-.+.+.|-.+.+++.+.|++....+
T Consensus 137 ~l~~I~~fF~~YK~legK~v~v~g~~~~~~A~~~I~~~~~~y 178 (188)
T PLN02373 137 RLAEIRRFFEDYKKNENKEVAVNDFLPAEAAIEAIQYSMDLY 178 (188)
T ss_pred HHHHHHHHHHHhcccCCCeEEeCCccCHHHHHHHHHHHHHHH
Confidence 799999999988888888888889999999998887765544
No 30
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=56.41 E-value=9 Score=18.37 Aligned_cols=12 Identities=8% Similarity=0.144 Sum_probs=8.1
Q ss_pred hHHHHHHHHHhh
Q 045879 34 TRHELIKFYNEH 45 (96)
Q Consensus 34 ~~~~l~~f~~~~ 45 (96)
...++++||++|
T Consensus 15 rlk~Ike~Hrr~ 26 (28)
T PF12108_consen 15 RLKEIKEYHRRY 26 (28)
T ss_dssp HHHHHHHHHHS-
T ss_pred HHHHHHHHHHhC
Confidence 356788888775
No 31
>PF10941 DUF2620: Protein of unknown function DUF2620; InterPro: IPR021238 This is a bacterial family of proteins with unknown function.
Probab=55.87 E-value=17 Score=23.26 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.9
Q ss_pred cEEEEEcCCCHHHHHHHHHHHhhc
Q 045879 51 MHLVVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 51 ~~l~v~G~~~~~~l~~~v~~~f~~ 74 (96)
|.|+|-|.++.+++.++|+++..+
T Consensus 1 ~kIvigGql~K~ei~~~i~~~~~~ 24 (117)
T PF10941_consen 1 MKIVIGGQLDKEEIAELIEKLGPG 24 (117)
T ss_pred CeEEEccccCHHHHHHHHHHHCCC
Confidence 578899999999999999998654
No 32
>PRK01250 inorganic pyrophosphatase; Provisional
Probab=55.79 E-value=38 Score=23.15 Aligned_cols=42 Identities=5% Similarity=0.069 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhhcCCC-CcEEEEEcCCCHHHHHHHHHHHhhcc
Q 045879 34 TRHELIKFYNEHYSSN-LMHLVVYSKESVDKIQGLVENKFQDI 75 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~-~~~l~v~G~~~~~~l~~~v~~~f~~~ 75 (96)
..+++++||+.|=... +-.+.+.|-.+.+++.+.|++....+
T Consensus 131 ~l~eI~~fF~~YK~le~gk~~~v~g~~~~~~A~~~I~~~~~~y 173 (176)
T PRK01250 131 LKAQIKHFFEHYKDLEKGKWVKVEGWGGAEEAKAEIVEAIERA 173 (176)
T ss_pred HHHHHHHHHHHhcCCCCCCCEEecCccCHHHHHHHHHHHHHHH
Confidence 7999999998654443 56677888889999999988766554
No 33
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=55.21 E-value=54 Score=21.45 Aligned_cols=41 Identities=15% Similarity=0.171 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhhcCC----CCcEEEEEcCCCHHHHHHHHHHHhhc
Q 045879 34 TRHELIKFYNEHYSS----NLMHLVVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~----~~~~l~v~G~~~~~~l~~~v~~~f~~ 74 (96)
..+.+.+|+..-... ++-.++|.|.++..++++.+++|...
T Consensus 57 ~~~hv~ky~~~ELgt~g~i~~~~lii~G~~~~~~i~~~L~~yI~~ 101 (138)
T PRK03988 57 DPKHVAKFLLKELGTAGNIEGGRLILQGKFSPRVINEKIDRYVKE 101 (138)
T ss_pred CHHHHHHHHHHHhCCceeecCCEEEEEEeeCHHHHHHHHHHHHHh
Confidence 467788888876654 45689999999999999999999876
No 34
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=55.11 E-value=33 Score=25.35 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHH
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVEN 70 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~ 70 (96)
+.+++++.-+. ...++.|-++|+++++.+.++++.
T Consensus 238 s~e~~~~av~~--~~~~~~ieaSGGI~~~ni~~yA~t 272 (296)
T PRK09016 238 TTEQMREAVKR--TNGRALLEVSGNVTLETLREFAET 272 (296)
T ss_pred ChHHHHHHHHh--hcCCeEEEEECCCCHHHHHHHHhc
Confidence 67788888763 456999999999999999888754
No 35
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=55.02 E-value=21 Score=26.85 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=26.1
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCH
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESV 61 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~ 61 (96)
+.+++.+.-+++..+++++++++|+...
T Consensus 406 t~~dv~~~a~~~~~~~~~~~~~~~p~~~ 433 (438)
T COG0612 406 TLEDVNAVAKKLLAPENLTIVVLGPEKA 433 (438)
T ss_pred CHHHHHHHHHHhcCCCCcEEEEEccccc
Confidence 8999999999999999999999999763
No 36
>PRK02230 inorganic pyrophosphatase; Provisional
Probab=54.76 E-value=35 Score=23.52 Aligned_cols=44 Identities=9% Similarity=-0.032 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhhcCCCCcEEE-EEcCCCHHHHHHHHHHHhhcccC
Q 045879 34 TRHELIKFYNEHYSSNLMHLV-VYSKESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~-v~G~~~~~~l~~~v~~~f~~~~~ 77 (96)
.++++.+||+.|=....=.++ +.|=.+.+++.+.|++....+..
T Consensus 117 ~l~~I~~fF~~YK~legk~~~~v~g~~~~~~A~~~I~~~~~~y~~ 161 (184)
T PRK02230 117 WLDEIEYFFSNYKNWKRKGITKVKGFEDEKWALKEYKECVELMKK 161 (184)
T ss_pred HHHHHHHHHHHhcCCCCCCeEEeCCccCHHHHHHHHHHHHHHHHH
Confidence 789999999987777655554 78889999999988877666543
No 37
>PRK00642 inorganic pyrophosphatase; Provisional
Probab=54.48 E-value=32 Score=24.04 Aligned_cols=43 Identities=7% Similarity=0.108 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhhcCCC---CcEEEEEcCCCHHHHHHHHHHHhhccc
Q 045879 34 TRHELIKFYNEHYSSN---LMHLVVYSKESVDKIQGLVENKFQDIR 76 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~---~~~l~v~G~~~~~~l~~~v~~~f~~~~ 76 (96)
..+++++||+.|=.++ .=.+.+.|-.+.+++.+.|++....|.
T Consensus 156 ~l~~I~~fF~~YK~legk~~k~~~~~g~~~~~~A~~vI~~~~~~y~ 201 (205)
T PRK00642 156 LLDRLQHYFLTYKATPGELIKGVEIVGIYGKEEAQKVIQLAHEDYA 201 (205)
T ss_pred HHHHHHHHHHHHcCcccCCCCeEEECCCcCHHHHHHHHHHHHHHHH
Confidence 8999999998776664 233567899999999999987766553
No 38
>PRK07413 hypothetical protein; Validated
Probab=53.76 E-value=21 Score=27.31 Aligned_cols=47 Identities=9% Similarity=0.249 Sum_probs=36.9
Q ss_pred CCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCC
Q 045879 30 KGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTD 79 (96)
Q Consensus 30 ~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~ 79 (96)
-|+.+.+++.++.+. .|.++-|+++|.-..+++.+++. +-+.+...+
T Consensus 140 ~gll~~eevl~~L~~--rP~~~evVLTGR~ap~~Lie~AD-lVTEm~~iK 186 (382)
T PRK07413 140 LGLLPVDEVVNTLKS--RPEGLEIIITGRAAPQSLLDIAD-LHSEMRPHR 186 (382)
T ss_pred CCCccHHHHHHHHHh--CCCCCEEEEeCCCCCHHHHHhCC-eeEEeceec
Confidence 467789999999975 89999999999998899988753 444444433
No 39
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=53.12 E-value=36 Score=29.08 Aligned_cols=44 Identities=11% Similarity=0.176 Sum_probs=39.3
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccC
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~ 77 (96)
+.+++.+|-...+.+....+.|.|+.+.+++.++++..-..+++
T Consensus 663 ~~~e~~~f~~~l~~~~~lE~lv~Gn~~~~da~~l~~~~~~~l~~ 706 (937)
T COG1025 663 SVEEFAAFRDTLLNGVHLEMLVLGNLTEADATNLAETLQKKLPA 706 (937)
T ss_pred cHHHHHHHHHHhhhccceeeeeeccchHHHHHHHHHHHHhhhcc
Confidence 89999999999999999999999999999999998766665554
No 40
>TIGR02648 rep_term_tus DNA replication terminus site-binding protein. Members of this protein family are found on the main chromosomes of a number of the Gammaproteobacteria; this model excludes related plasmid proteins, which score between trusted and noise cutoffs. This protein, DNA replication terminus site-binding protein, binds specific DNA sites near the replication terminus to arrest the DNA replication fork.
Probab=52.84 E-value=18 Score=26.81 Aligned_cols=56 Identities=25% Similarity=0.298 Sum_probs=45.5
Q ss_pred CCC-CCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccC
Q 045879 11 PYH-KFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 11 p~~-~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~ 77 (96)
|.+ ||+|.|+..|+++ +++++.+=-++-+.+++.+- .++-++....|++-..++.+
T Consensus 156 p~SvRFgWanK~iIk~~-------tk~evL~~L~ksl~~~r~v~----p~~~eqW~~~l~~Ei~~I~~ 212 (300)
T TIGR02648 156 PASVRFGWANKHIIKNV-------TRDEILAQLEKSLNSGRAVA----PYTREQWQELVEREIQDIAA 212 (300)
T ss_pred CCeeeeecccchhhhhc-------CHHHHHHHHHHHHhcCCCCC----CCCHHHHHHHHHHHHHHHHh
Confidence 655 8999999999998 99999999999999888754 56777777777777666543
No 41
>PRK07413 hypothetical protein; Validated
Probab=51.39 E-value=26 Score=26.82 Aligned_cols=37 Identities=5% Similarity=-0.000 Sum_probs=31.2
Q ss_pred CCcchHHHHHHHHHhhcCCCCcEEEEEcCC-CHHHHHHHH
Q 045879 30 KGLDTRHELIKFYNEHYSSNLMHLVVYSKE-SVDKIQGLV 68 (96)
Q Consensus 30 ~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~-~~~~l~~~v 68 (96)
-|+.+.+++.++.++ .|.++.|+++|+- ..+++.+++
T Consensus 320 ~gli~~eevi~~L~~--rp~~~evVLTGR~~ap~~lie~A 357 (382)
T PRK07413 320 LELLPVEPIVQTLLR--KPRDTEVIITGRCKNQPAYFDLA 357 (382)
T ss_pred CCCccHHHHHHHHHh--CCCCCEEEEeCCCCCCHHHHHhC
Confidence 467789999999975 8999999999996 768888765
No 42
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.02 E-value=42 Score=24.78 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHH
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVEN 70 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~ 70 (96)
+.+++++.-+ +.++++.+-++|+++++.+.+++..
T Consensus 235 spe~l~~av~--~~~~~~~lEaSGGIt~~ni~~yA~t 269 (294)
T PRK06978 235 TLDMMREAVR--VTAGRAVLEVSGGVNFDTVRAFAET 269 (294)
T ss_pred CHHHHHHHHH--hhcCCeEEEEECCCCHHHHHHHHhc
Confidence 6788888775 3466899999999999988888754
No 43
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=50.05 E-value=11 Score=23.38 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=13.8
Q ss_pred CCcEEEEEcCCCHHHHHHHHHHH
Q 045879 49 NLMHLVVYSKESVDKIQGLVENK 71 (96)
Q Consensus 49 ~~~~l~v~G~~~~~~l~~~v~~~ 71 (96)
++|++++.++..++++.+.++++
T Consensus 50 SRmtivv~~~~~i~Qi~kQL~KL 72 (96)
T PRK08178 50 SRIWLLVNDDQRLEQMISQIEKL 72 (96)
T ss_pred eEEEEEEcCchHHHHHHHHHhCC
Confidence 47899887654445555544443
No 44
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=49.45 E-value=18 Score=22.37 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=22.1
Q ss_pred CCcEEEEEcC-CCHHHHHHHHHHHhhcccC
Q 045879 49 NLMHLVVYSK-ESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 49 ~~~~l~v~G~-~~~~~l~~~v~~~f~~~~~ 77 (96)
.++.++|.|+ ++.+++++.++++=+.+.+
T Consensus 47 e~lkitiEG~~id~d~i~~~Ie~~Gg~IHS 76 (95)
T PF02680_consen 47 ENLKITIEGDDIDFDEIKEAIEELGGVIHS 76 (95)
T ss_dssp EEEEEEEEESSE-HHHHHHHHHHTT-EEEE
T ss_pred cEEEEEEEeCCCCHHHHHHHHHHcCCeEEe
Confidence 4789999998 9999999999876555543
No 45
>PRK13808 adenylate kinase; Provisional
Probab=48.14 E-value=67 Score=24.11 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=27.9
Q ss_pred hcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCC
Q 045879 45 HYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNT 78 (96)
Q Consensus 45 ~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~ 78 (96)
||...+.++.|-|..+.+++.+.|.+.+..+...
T Consensus 164 ~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~~ 197 (333)
T PRK13808 164 YYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGAA 197 (333)
T ss_pred HhhccCcEEEEECCCCHHHHHHHHHHHHHHHhCC
Confidence 6766678899999999999999998888776443
No 46
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=47.75 E-value=31 Score=23.17 Aligned_cols=36 Identities=8% Similarity=0.146 Sum_probs=25.2
Q ss_pred hHHHHHHHHHh--hcCCCCcEEEEEcCCCHHHHHHHHHH
Q 045879 34 TRHELIKFYNE--HYSSNLMHLVVYSKESVDKIQGLVEN 70 (96)
Q Consensus 34 ~~~~l~~f~~~--~Y~~~~~~l~v~G~~~~~~l~~~v~~ 70 (96)
+.+++++.-+. -- ..++.|.++|.++++.+.++.+.
T Consensus 110 ~~~~~~~~v~~l~~~-~~~v~ie~SGGI~~~ni~~ya~~ 147 (169)
T PF01729_consen 110 SPEDLKEAVEELREL-NPRVKIEASGGITLENIAEYAKT 147 (169)
T ss_dssp CHHHHHHHHHHHHHH-TTTSEEEEESSSSTTTHHHHHHT
T ss_pred CHHHHHHHHHHHhhc-CCcEEEEEECCCCHHHHHHHHhc
Confidence 55666666651 22 23499999999999988888753
No 47
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=47.11 E-value=57 Score=24.00 Aligned_cols=37 Identities=14% Similarity=0.035 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHH
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVEN 70 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~ 70 (96)
+.+++++.-+..=..+++.+-++|+++++.+.++...
T Consensus 218 ~~e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~yA~t 254 (280)
T COG0157 218 SPEELKEAVKLLGLAGRALLEASGGITLENIREYAET 254 (280)
T ss_pred CHHHHHHHHHHhccCCceEEEEeCCCCHHHHHHHhhc
Confidence 6788888777655777999999999999988887653
No 48
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=46.77 E-value=26 Score=21.19 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=26.2
Q ss_pred hcCCCCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 45 HYSSNLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 45 ~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
||..+-+.+.|-.+++++++.+.|...|+
T Consensus 8 ~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~ 36 (86)
T cd06408 8 HAQDDTRYIMIGPDTGFADFEDKIRDKFG 36 (86)
T ss_pred EecCcEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 67888888889999999999999999997
No 49
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.68 E-value=54 Score=24.19 Aligned_cols=35 Identities=3% Similarity=-0.033 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHH
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVEN 70 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~ 70 (96)
+.+++++.-+ ...+++.+-++|+++++.+.+++..
T Consensus 227 spe~l~~av~--~~~~~~~leaSGGI~~~ni~~yA~t 261 (290)
T PRK06559 227 SLEQIEQAIT--LIAGRSRIECSGNIDMTTISRFRGL 261 (290)
T ss_pred CHHHHHHHHH--HhcCceEEEEECCCCHHHHHHHHhc
Confidence 6778887776 3456899999999999988888754
No 50
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=45.93 E-value=21 Score=18.34 Aligned_cols=15 Identities=13% Similarity=0.251 Sum_probs=12.7
Q ss_pred EEcCCCHHHHHHHHH
Q 045879 55 VYSKESVDKIQGLVE 69 (96)
Q Consensus 55 v~G~~~~~~l~~~v~ 69 (96)
-.|+++.++|.+++.
T Consensus 10 ~~GP~s~~el~~l~~ 24 (45)
T PF14237_consen 10 QQGPFSLEELRQLIS 24 (45)
T ss_pred EECCcCHHHHHHHHH
Confidence 379999999998875
No 51
>smart00444 GYF Contains conserved Gly-Tyr-Phe residues. Proline-binding domain in CD2-binding protein. Contains conserved Gly-Tyr-Phe residues.
Probab=45.80 E-value=26 Score=19.21 Aligned_cols=32 Identities=13% Similarity=0.306 Sum_probs=25.5
Q ss_pred chHHHHHHHHHhhcCCCCcEEEEEcCCCHHHH
Q 045879 33 DTRHELIKFYNEHYSSNLMHLVVYSKESVDKI 64 (96)
Q Consensus 33 ~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l 64 (96)
-+.++|+.+|++-|-++++.|..+++-+.+.+
T Consensus 16 f~~~~M~~W~~~gyF~~~l~vr~~~~~~~~~l 47 (56)
T smart00444 16 FTASQMSQWYQAGYFPDSLQIKRLNEPPYDTL 47 (56)
T ss_pred cCHHHHHHHHHCCCCCCCeEEEEcCCCCCCcc
Confidence 37888999999999999999988888754333
No 52
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=45.77 E-value=92 Score=20.99 Aligned_cols=46 Identities=11% Similarity=0.229 Sum_probs=37.0
Q ss_pred CcchHHHHHHHHHhhcCCC--------------CcEEEEEcCCCHHHHHHHHHHHhhccc
Q 045879 31 GLDTRHELIKFYNEHYSSN--------------LMHLVVYSKESVDKIQGLVENKFQDIR 76 (96)
Q Consensus 31 ~~~~~~~l~~f~~~~Y~~~--------------~~~l~v~G~~~~~~l~~~v~~~f~~~~ 76 (96)
++-+.|.|.+=|-|.+... -..|++.|+.+.+++.+++++.|..+.
T Consensus 52 alHTlEHL~At~lRn~~~~~~~iI~~sPMGCrTGFYli~~g~~~~~~i~~l~~~~l~~i~ 111 (158)
T PRK02260 52 GIHTLEHLLAGFLRNHLDGGVEIIDISPMGCRTGFYLILIGTPDEEDVADALKATLEDVL 111 (158)
T ss_pred chhHHHHHHHHHHhhCccCCceEEEECCCccccccEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 4567888888777776554 346888999999999999999999874
No 53
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=45.11 E-value=77 Score=20.45 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=28.1
Q ss_pred HHHHHHHHH------hhcCCCCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 35 RHELIKFYN------EHYSSNLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 35 ~~~l~~f~~------~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
.+.+..||+ .+|......+.|-|+.+.+++.+.|.+.+.
T Consensus 142 ~~r~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 186 (188)
T TIGR01360 142 KKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAID 186 (188)
T ss_pred HHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 455666664 346655678888999999988888777654
No 54
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=43.57 E-value=98 Score=21.38 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhhcCC----CCcEEEEEcCCCHHHHHHHHHHHhhc
Q 045879 34 TRHELIKFYNEHYSS----NLMHLVVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~----~~~~l~v~G~~~~~~l~~~v~~~f~~ 74 (96)
..+.+.+|+..-... ++=.++|.|.++..++++++++|+..
T Consensus 53 ~~~~~~ky~~~ELgt~~~~~~~~~ii~G~~~~~~i~~~l~~yi~~ 97 (201)
T PRK12336 53 DPDHLMKFLQRELGTAGKIEGGRAVFNGKFTEEDIQAAIDAYVDE 97 (201)
T ss_pred CHHHHHHHHHHHhCCcceecCCEEEEEeeeCHHHHHHHHHHHHHh
Confidence 467888888876544 23378999999999999999999875
No 55
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.46 E-value=65 Score=23.60 Aligned_cols=35 Identities=3% Similarity=0.033 Sum_probs=27.6
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHH
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVEN 70 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~ 70 (96)
+.+++++.-. ...++..|-++|+++++.+.+++..
T Consensus 223 s~e~l~~av~--~~~~~~~leaSGgI~~~ni~~yA~t 257 (281)
T PRK06543 223 SLDDLREGVE--LVDGRAIVEASGNVNLNTVGAIAST 257 (281)
T ss_pred CHHHHHHHHH--HhCCCeEEEEECCCCHHHHHHHHhc
Confidence 6777777776 3456779999999999988888754
No 56
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=43.19 E-value=74 Score=22.36 Aligned_cols=39 Identities=3% Similarity=0.144 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHh
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKF 72 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f 72 (96)
..+..++.+...|.++++.++....+..|++.+++++..
T Consensus 12 d~e~~~~~l~~~~~~~~~~~f~~~~i~Vd~iReii~~~~ 50 (206)
T PRK08485 12 DFEESKEELINEFGKKNLRFFIKEEFKIEDAKEVIAEAY 50 (206)
T ss_pred CHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHh
Confidence 456677777778999999999999999999988877654
No 57
>PF05838 Glyco_hydro_108: Glycosyl hydrolase 108; InterPro: IPR008565 This family consists of several hypothetical bacterial sequences as well as one viral sequence Q9MC03 from SWISSPROT, the function of this family is unknown.; PDB: 2NR7_A 2IKB_B 2IS5_A.
Probab=42.81 E-value=20 Score=21.37 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=16.0
Q ss_pred HhhhccccccCCcchHHHHHHHHHhhc-CCCCc
Q 045879 20 WETLEVRPKAKGLDTRHELIKFYNEHY-SSNLM 51 (96)
Q Consensus 20 ~~tl~~~~~~~~~~~~~~l~~f~~~~Y-~~~~~ 51 (96)
..+++.+ ++++..++|++.| .+-+|
T Consensus 39 ~~d~~~L-------t~~~A~~iY~~~yW~~~~~ 64 (83)
T PF05838_consen 39 AGDMRDL-------TRDQAKAIYRRDYWDPLGC 64 (83)
T ss_dssp -S-CCCS--------HHHHHHCHHHHTTCCCTG
T ss_pred cCchhhc-------CHHHHHHHHHHHhcCccch
Confidence 4567776 8999999997665 55443
No 58
>PF14178 YppF: YppF-like protein
Probab=42.81 E-value=49 Score=18.73 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=24.3
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHh
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKF 72 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f 72 (96)
+..+|.+|.++.| |.|.+++.+-.++++.+=
T Consensus 20 ~~NeLLDFar~~Y--------i~gei~i~eYR~lvreLE 50 (60)
T PF14178_consen 20 DMNELLDFARKLY--------IQGEISINEYRNLVRELE 50 (60)
T ss_pred cHHHHHHHHHHHH--------HhCcccHHHHHHHHHHHH
Confidence 6788999999988 567788887777776553
No 59
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.65 E-value=72 Score=23.37 Aligned_cols=35 Identities=6% Similarity=-0.027 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHH
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVEN 70 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~ 70 (96)
+.+++++.-+ ...++..+-++|+++++.+.+++..
T Consensus 224 s~e~l~~av~--~~~~~~~leaSGGI~~~ni~~yA~t 258 (281)
T PRK06106 224 TPDTLREAVA--IVAGRAITEASGRITPETAPAIAAS 258 (281)
T ss_pred CHHHHHHHHH--HhCCCceEEEECCCCHHHHHHHHhc
Confidence 6788888876 3456677999999999988888754
No 60
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=42.63 E-value=51 Score=20.53 Aligned_cols=32 Identities=13% Similarity=0.152 Sum_probs=26.2
Q ss_pred cCCCCcEEEEEcCCCHHHHHHHHHHHhhcccC
Q 045879 46 YSSNLMHLVVYSKESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 46 Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~ 77 (96)
..-++-+++++|.++.+.+..+-.+.+...+.
T Consensus 7 ~~~~~~tL~LsGeL~r~tl~~lw~~r~~~~~~ 38 (99)
T COG3113 7 WNLDGDTLVLSGELDRDTLLPLWSQREAQLKQ 38 (99)
T ss_pred hhcCCCeEEEeccccHHHHHHHHHHHHHHccc
Confidence 34577899999999999999988887776665
No 61
>PF10490 CENP-F_C_Rb_bdg: Rb-binding domain of kinetochore protein Cenp-F/LEK1; InterPro: IPR018302 This entry represents the Rb protein-binding domain from the centromere protein Cenp-F. Cenp-F is a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, that is involved in chromosome segregation during mitosis and is essential for the full functioning of the mitotic checkpoint pathway [, ]. Cenp-F interacts with retinoblastoma protein (RB), CENP-E and BUBR1. This domain is at the very C terminus of the C-terminal coiled-coil region, and binds to the Rb family of tumour suppressors [].
Probab=42.16 E-value=13 Score=20.04 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHhhcccCCCCCC
Q 045879 59 ESVDKIQGLVENKFQDIRNTDRNL 82 (96)
Q Consensus 59 ~~~~~l~~~v~~~f~~~~~~~~~~ 82 (96)
+.++-|-+.|.+-|.+||.++.+.
T Consensus 12 ~epeGLPevV~kGFADIPtgk~sP 35 (49)
T PF10490_consen 12 FEPEGLPEVVKKGFADIPTGKTSP 35 (49)
T ss_pred cCcCCcHHHHHhccccCCCCCCCc
Confidence 444556788999999999987654
No 62
>TIGR02572 LcrR type III secretion system regulator LcrR. This protein is found in type III secretion operons and has been characterized in Yersinia as a regulator of the Low-Calcium Respone (LCR).
Probab=41.84 E-value=18 Score=23.86 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=25.3
Q ss_pred CCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCC
Q 045879 13 HKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSN 49 (96)
Q Consensus 13 ~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~ 49 (96)
++.+-||.+.+..-|. +.+.|-+||.|+-.++
T Consensus 83 ~~~lyGnV~vl~gS~l-----s~~Rl~~FY~rwtGAs 114 (139)
T TIGR02572 83 DWRLYGNVDVLAGSPL-----SSQRLARFYRRWTGAS 114 (139)
T ss_pred CCEEEeeeeEecCCCC-----cHHHHHHHHHHHcCCC
Confidence 4567788888877553 7899999999998765
No 63
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=41.67 E-value=78 Score=24.15 Aligned_cols=38 Identities=8% Similarity=0.182 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHh
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKF 72 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f 72 (96)
+.+++++.-+ -|.=.|+.+.|-|++++|++++.+...-
T Consensus 200 d~~~ir~iL~-Ey~I~nA~V~Ir~dvTlDd~id~l~~nr 237 (365)
T COG1163 200 DEDTVRAILR-EYRIHNADVLIREDVTLDDLIDALEGNR 237 (365)
T ss_pred CHHHHHHHHH-HhCcccceEEEecCCcHHHHHHHHhhcc
Confidence 5677777775 5889999999999999999999886553
No 64
>PF10827 DUF2552: Protein of unknown function (DUF2552) ; InterPro: IPR020157 This entry contains proteins with no known function.
Probab=41.57 E-value=28 Score=20.49 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=30.3
Q ss_pred ccCCCCCCCCC---CCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcc
Q 045879 4 HLSSEDHPYHK---FSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDI 75 (96)
Q Consensus 4 ~~~~~~hp~~~---~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~ 75 (96)
+.++.+|||+- ++.|- ++++.. =+..-+-|+.--.-=..+|++.+|+.+...++
T Consensus 19 SFl~~NhPYsLLHWSi~G~-~~~~kD-----------------VWLLQdEmTFet~eF~tld~Ai~Wi~e~M~~i 75 (79)
T PF10827_consen 19 SFLNNNHPYSLLHWSIAGA-ESVKKD-----------------VWLLQDEMTFETQEFPTLDLAIAWIGEHMPHI 75 (79)
T ss_pred HhhcCCCCceeeeeeeccc-cccccc-----------------eEEEecceeEeecccccHHHHHHHHHhcccch
Confidence 45788999984 44443 333321 13334455554444456777777777665544
No 65
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=41.25 E-value=19 Score=21.11 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=17.2
Q ss_pred CCcEEEEEcCCCHHHHHHHHHHHh
Q 045879 49 NLMHLVVYSKESVDKIQGLVENKF 72 (96)
Q Consensus 49 ~~~~l~v~G~~~~~~l~~~v~~~f 72 (96)
.+|++++.++-..+++.+.++++.
T Consensus 45 sriti~v~~~~~i~ql~kQL~KL~ 68 (76)
T PRK11152 45 INIELTVASERPIDLLSSQLNKLV 68 (76)
T ss_pred EEEEEEECCCchHHHHHHHHhcCc
Confidence 478888876667777777776654
No 66
>cd00072 GYF GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins. Involved in signaling lymphocyte activity. Also present in other unrelated proteins (mainly unknown) derived from diverse eukaryotic species.
Probab=41.22 E-value=49 Score=18.13 Aligned_cols=24 Identities=8% Similarity=0.358 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEc
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYS 57 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G 57 (96)
+.++|+++++.-|-+.++.|..+|
T Consensus 18 ~~~~M~~W~~~gyF~~~l~vr~~~ 41 (57)
T cd00072 18 SASQMLQWYQAGYFPDGLQVRRLD 41 (57)
T ss_pred CHHHHHHHHHCCCCCCCeEEEECC
Confidence 788999999998988898888885
No 67
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=41.01 E-value=42 Score=22.43 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=32.2
Q ss_pred CCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHH
Q 045879 9 DHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQ 65 (96)
Q Consensus 9 ~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~ 65 (96)
+-|||.- +|+.+.+.. ...++.+..++.+.+ .+++++.++..++++.
T Consensus 113 nPPyG~r-~~~~~~~~~--------ly~~~~~~~~~~l~~-~~v~l~~~~~~~~~~~ 159 (179)
T PF01170_consen 113 NPPYGRR-LGSKKDLEK--------LYRQFLRELKRVLKP-RAVFLTTSNRELEKAL 159 (179)
T ss_dssp E--STTS-HCHHHHHHH--------HHHHHHHHHHCHSTT-CEEEEEESCCCHHHHH
T ss_pred Ccchhhh-ccCHHHHHH--------HHHHHHHHHHHHCCC-CEEEEEECCHHHHHHh
Confidence 3478764 345555544 477788888888888 9999999988865543
No 68
>PF11079 YqhG: Bacterial protein YqhG of unknown function; InterPro: IPR024562 This family of putative proteins appears to be restricted to Firmicutes. Their function is not known.
Probab=40.07 E-value=25 Score=25.55 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcC------CCHHHHHHHHHHHh
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSK------ESVDKIQGLVENKF 72 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~------~~~~~l~~~v~~~f 72 (96)
..+++++|-.+|+.+++|.|+-.++ ++.+--.++..+-|
T Consensus 2 ~~~~i~~f~~ryf~a~~c~i~e~~p~~~~VqLt~e~Dk~lmnRPf 46 (260)
T PF11079_consen 2 QQQQIHQFLERYFEANGCPILEKSPGHMTVQLTVEMDKELMNRPF 46 (260)
T ss_pred CHHHHHHHHHHHHHhcCCeeeecCCCeEEEEcCHHHhHHHhCCCc
Confidence 4789999999999999999987775 45443344444433
No 69
>PF02213 GYF: GYF domain; InterPro: IPR003169 The glycine-tyrosine-phenylalanine (GYF) domain is an around 60-amino acid domain which contains a conserved GP[YF]xxxx[MV]xxWxxx[GN]YF motif. It was identified in the human intracellular protein termed CD2 binding protein 2 (CD2BP2), which binds to a site containing two tandem PPPGHR segments within the cytoplasmic region of CD2. Binding experiments and mutational analyses have demonstrated the critical importance of the GYF tripeptide in ligand binding. A GYF domain is also found in several other eukaryotic proteins of unknown function []. It has been proposed that the GYF domain found in these proteins could also be involved in proline-rich sequence recognition []. Resolution of the structure of the CD2BP2 GYF domain by NMR spectroscopy revealed a compact domain with a beta-beta-alpha-beta-beta topology, where the single alpha-helix is tilted away from the twisted, anti-parallel beta-sheet. The conserved residues of the GYF domain create a contiguous patch of predominantly hydrophobic nature which forms an integral part of the ligand-binding site []. There is limited homology within the C-terminal 20-30 amino acids of various GYF domains, supporting the idea that this part of the domain is structurally but not functionally important [].; GO: 0005515 protein binding; PDB: 1SYX_F 1L2Z_A 1GYF_A 1WH2_A 3FMA_C 3K3V_A.
Probab=39.52 E-value=45 Score=18.05 Aligned_cols=26 Identities=8% Similarity=0.222 Sum_probs=22.1
Q ss_pred chHHHHHHHHHhhcCCCCcEEEEEcC
Q 045879 33 DTRHELIKFYNEHYSSNLMHLVVYSK 58 (96)
Q Consensus 33 ~~~~~l~~f~~~~Y~~~~~~l~v~G~ 58 (96)
-+.++|+.++++-|-++++.|..+++
T Consensus 16 f~~~~M~~W~~~gyF~~~l~vr~~~~ 41 (57)
T PF02213_consen 16 FSSEQMQAWYKQGYFPDDLQVRRVDD 41 (57)
T ss_dssp EEHHHHHHHHHTTSSTTT-EEEETTS
T ss_pred cCHHHHHHHHHCCCCCCCcEEEEecC
Confidence 37899999999999999999988854
No 70
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=39.46 E-value=76 Score=22.51 Aligned_cols=25 Identities=8% Similarity=0.020 Sum_probs=20.3
Q ss_pred hcCCCCcEEEEEcCCCHHHHHHHHH
Q 045879 45 HYSSNLMHLVVYSKESVDKIQGLVE 69 (96)
Q Consensus 45 ~Y~~~~~~l~v~G~~~~~~l~~~v~ 69 (96)
.-.+.+..|.++|+++.+.+..+..
T Consensus 234 ~~~~~~~~i~~Sggi~~~~i~~~~~ 258 (281)
T cd00516 234 GKGLPRVKIEASGGLDEENIRAYAE 258 (281)
T ss_pred hcCCCceEEEEeCCCCHHHHHHHHH
Confidence 4566789999999999887777654
No 71
>PF07377 DUF1493: Protein of unknown function (DUF1493); InterPro: IPR010862 This family consists of several bacterial proteins of around 115 residues in length. Members of this family are largely found in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.
Probab=38.88 E-value=53 Score=20.31 Aligned_cols=42 Identities=19% Similarity=0.289 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhhcCC----CCcEEEEEcC------CCHHHHHHHHHHHhhcc
Q 045879 34 TRHELIKFYNEHYSS----NLMHLVVYSK------ESVDKIQGLVENKFQDI 75 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~----~~~~l~v~G~------~~~~~l~~~v~~~f~~~ 75 (96)
+-+++.+|.++++.. ....|....+ ++.+++.++++++|..+
T Consensus 4 i~~~I~~fi~~~~~~~~~~~~~~it~dt~L~~DL~~~~dda~elm~~f~~~F 55 (111)
T PF07377_consen 4 IEQEIIEFIREENGPYLFFKKKPITPDTDLQEDLGLDGDDAEELMEDFFERF 55 (111)
T ss_pred HHHHHHHHHHHHcCcccccCcccCCCCCcHHHhcCCCHHHHHHHHHHHHHHh
Confidence 578899999999876 3444444333 34678888888888765
No 72
>PF10726 DUF2518: Protein of function (DUF2518); InterPro: IPR019664 This entry contains the Ycf51 protein family, which is conserved in Cyanobacteria. The function is not known.
Probab=38.50 E-value=54 Score=21.79 Aligned_cols=32 Identities=6% Similarity=0.145 Sum_probs=25.5
Q ss_pred CCCcEEEEEcCCCHHHHHHHHHHHhhcccCCC
Q 045879 48 SNLMHLVVYSKESVDKIQGLVENKFQDIRNTD 79 (96)
Q Consensus 48 ~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~ 79 (96)
.+..++++.-+++.++++..+++.-+++.+..
T Consensus 80 ~~~vVi~v~~~i~~~~leaTL~QaA~nL~s~G 111 (145)
T PF10726_consen 80 ADQVVIAVPPDITPEALEATLEQAASNLFSGG 111 (145)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhccccC
Confidence 45677777788999999999999888876543
No 73
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=38.47 E-value=55 Score=16.70 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=18.9
Q ss_pred CCcchHHHHHHHHHhhcCCCCcEEEEEcC
Q 045879 30 KGLDTRHELIKFYNEHYSSNLMHLVVYSK 58 (96)
Q Consensus 30 ~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~ 58 (96)
+|=..+++|.+|.+.. .| .-++.|-|.
T Consensus 15 SgHad~~~L~~~i~~~-~p-~~vilVHGe 41 (43)
T PF07521_consen 15 SGHADREELLEFIEQL-NP-RKVILVHGE 41 (43)
T ss_dssp SSS-BHHHHHHHHHHH-CS-SEEEEESSE
T ss_pred cCCCCHHHHHHHHHhc-CC-CEEEEecCC
Confidence 4445899999999987 88 555555553
No 74
>PF14410 GH-E: HNH/ENDO VII superfamily nuclease with conserved GHE residues
Probab=38.14 E-value=23 Score=20.40 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=13.6
Q ss_pred chHHHHHHHHH--hhcCCCC
Q 045879 33 DTRHELIKFYN--EHYSSNL 50 (96)
Q Consensus 33 ~~~~~l~~f~~--~~Y~~~~ 50 (96)
.+++++++||. .+|.+..
T Consensus 41 ~t~ke~~d~~n~p~nyrlE~ 60 (70)
T PF14410_consen 41 ITRKEFLDWYNDPDNYRLED 60 (70)
T ss_pred CCHHHHHHHHhCccceeecC
Confidence 49999999998 5555543
No 75
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=37.39 E-value=20 Score=21.29 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=22.8
Q ss_pred hcCCCCcEEEEEcCCCHHHHHHHHHH
Q 045879 45 HYSSNLMHLVVYSKESVDKIQGLVEN 70 (96)
Q Consensus 45 ~Y~~~~~~l~v~G~~~~~~l~~~v~~ 70 (96)
||..+++.|-+.+..|+|.+++++..
T Consensus 40 ~ytn~eL~iPl~~Q~DLDkAie~ld~ 65 (79)
T cd06405 40 HYTNNELLIPLKNQEDLDRAIELLDR 65 (79)
T ss_pred EEecccEEEeccCHHHHHHHHHHHcc
Confidence 78888899999999999999888865
No 76
>KOG3239 consensus Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1) [General function prediction only]
Probab=37.29 E-value=89 Score=21.61 Aligned_cols=47 Identities=13% Similarity=0.254 Sum_probs=30.7
Q ss_pred CcchHHHHHHHHHhhcCCCC--------cEEEEEcCCCHHHHHHHHHHHhhcccCC
Q 045879 31 GLDTRHELIKFYNEHYSSNL--------MHLVVYSKESVDKIQGLVENKFQDIRNT 78 (96)
Q Consensus 31 ~~~~~~~l~~f~~~~Y~~~~--------~~l~v~G~~~~~~l~~~v~~~f~~~~~~ 78 (96)
+|++...-+-|-++|=.... =-|+|+|++. +++.+.|-+.|..++..
T Consensus 126 dIdlk~aaK~fa~KFAtGaSVtk~a~kkdEIvIQGDv~-dDi~d~I~ekw~ev~ed 180 (193)
T KOG3239|consen 126 DIDLKKAAKFFAQKFATGASVTKNAEKKDEIVIQGDVK-DDIFDFIPEKWPEVPED 180 (193)
T ss_pred cccHHHHHHHHHHhhccCccccCCCCccceEEEeccch-HHHHHHHHHhcccCCcc
Confidence 44445544545555443332 2479999999 78999998888766654
No 77
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=37.14 E-value=26 Score=19.51 Aligned_cols=24 Identities=13% Similarity=0.295 Sum_probs=16.3
Q ss_pred CCcEEEEEc-CCCHHHHHHHHHHHh
Q 045879 49 NLMHLVVYS-KESVDKIQGLVENKF 72 (96)
Q Consensus 49 ~~~~l~v~G-~~~~~~l~~~v~~~f 72 (96)
.+|++++.| +-..+++.+.+++..
T Consensus 34 ~riti~v~~~~~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 34 SRITIVVSGDDREIEQLVKQLEKLI 58 (63)
T ss_dssp EEEEEEEES-CCHHHHHHHHHHCST
T ss_pred EEEEEEEeeCchhHHHHHHHHhccC
Confidence 467888888 566666666666543
No 78
>PF14060 DUF4252: Domain of unknown function (DUF4252)
Probab=37.11 E-value=36 Score=21.88 Aligned_cols=22 Identities=9% Similarity=0.234 Sum_probs=17.4
Q ss_pred CCCcEEEEEcCCCHHHHHHHHH
Q 045879 48 SNLMHLVVYSKESVDKIQGLVE 69 (96)
Q Consensus 48 ~~~~~l~v~G~~~~~~l~~~v~ 69 (96)
-+.+.+.+.|+++++++.+++.
T Consensus 133 ~e~~~v~i~G~i~~~~I~~l~~ 154 (155)
T PF14060_consen 133 DEFVVVRIKGDIDPEDISKLIK 154 (155)
T ss_pred CcEEEEEEeCCCCHHHHHHHHc
Confidence 3456778899999999988774
No 79
>PRK00279 adk adenylate kinase; Reviewed
Probab=36.66 E-value=1.2e+02 Score=20.47 Aligned_cols=30 Identities=10% Similarity=0.088 Sum_probs=24.1
Q ss_pred hhcCCCCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 44 EHYSSNLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 44 ~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
+||....+.+.|-|+-+.+++.+.|.+.+.
T Consensus 184 ~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 213 (215)
T PRK00279 184 DYYKKKGKLKKIDGTGSIDEVFADILKALG 213 (215)
T ss_pred HHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 345555788999999999999998887764
No 80
>PHA03169 hypothetical protein; Provisional
Probab=36.35 E-value=1.4e+02 Score=23.09 Aligned_cols=65 Identities=9% Similarity=0.199 Sum_probs=43.9
Q ss_pred CCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCc---------EEEEEcCCCHHHHHHHHHHH-hhccc
Q 045879 7 SEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLM---------HLVVYSKESVDKIQGLVENK-FQDIR 76 (96)
Q Consensus 7 ~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~---------~l~v~G~~~~~~l~~~v~~~-f~~~~ 76 (96)
....++.+..-+ ..++..+|. .....+.||+++. |.-+ +|.+-| +...|-+|.+.+ |.++.
T Consensus 278 ~~~sh~~r~P~~-~qs~d~iP~-----K~r~r~~Ffr~~l-P~~~~~~p~~W~~~v~fWg--dP~~LyrLsraLqfpG~~ 348 (413)
T PHA03169 278 SHPSHRSRLPEG-QQSEDKVPR-----KYQARRRFFRQVL-PSILPPRPGPWCWVVFCWG--DPYSLYRLSRCLQFPGAV 348 (413)
T ss_pred cCCcccccCCCC-CCCCCCCCc-----chhHHHHHHHHhc-cccCCCCCCceeEEEEecC--CcHHHHHHHHHhccCCee
Confidence 344556664433 347777775 6888999999987 6544 455666 667788887766 77776
Q ss_pred CCCC
Q 045879 77 NTDR 80 (96)
Q Consensus 77 ~~~~ 80 (96)
+..+
T Consensus 349 ssgv 352 (413)
T PHA03169 349 SSGV 352 (413)
T ss_pred ccce
Confidence 6554
No 81
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=36.18 E-value=59 Score=24.54 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=34.1
Q ss_pred hhccccccCCcchHHHHHHHHHhhc--CCCCcEEEEEcCCCHH-HHHHHHHH
Q 045879 22 TLEVRPKAKGLDTRHELIKFYNEHY--SSNLMHLVVYSKESVD-KIQGLVEN 70 (96)
Q Consensus 22 tl~~~~~~~~~~~~~~l~~f~~~~Y--~~~~~~l~v~G~~~~~-~l~~~v~~ 70 (96)
|+.++.+.+...|.+.+..|+++.| .-+|.++||+-..|.. ++.+++.+
T Consensus 102 tV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~GwDy~~~~~e~~k~ 153 (337)
T COG2247 102 TVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVYGWDYADALMELMKE 153 (337)
T ss_pred EEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEeccccHHHHHHHHhc
Confidence 3455555555568888999998666 4556788877777766 67777765
No 82
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=36.13 E-value=81 Score=24.50 Aligned_cols=52 Identities=27% Similarity=0.305 Sum_probs=37.5
Q ss_pred CCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcC--CCHHHHHHHHHHHhh
Q 045879 9 DHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSK--ESVDKIQGLVENKFQ 73 (96)
Q Consensus 9 ~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~--~~~~~l~~~v~~~f~ 73 (96)
-|||-.-+-|-+.-|... .+.-.++| |++..++-+|| .+.+++...++..|+
T Consensus 49 FHPYCNAGGGGErVLW~A-------vr~~q~k~------~n~~~viYsGD~n~t~~~IL~k~k~~F~ 102 (465)
T KOG1387|consen 49 FHPYCNAGGGGERVLWKA-------VRITQRKF------PNNVIVIYSGDFNVTPENILNKVKNKFD 102 (465)
T ss_pred ecccccCCCCcceehhHH-------HHHHHHhC------CCceEEEEeCCCCCCHHHHHHHHHHhcC
Confidence 389988888877777664 33333332 77888888998 567888888888886
No 83
>PRK04968 SecY interacting protein Syd; Provisional
Probab=35.92 E-value=32 Score=23.71 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=33.6
Q ss_pred CCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcC------CCHHHHHHHHHHHhhc
Q 045879 13 HKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSK------ESVDKIQGLVENKFQD 74 (96)
Q Consensus 13 ~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~------~~~~~l~~~v~~~f~~ 74 (96)
-|...++.+.|.+. =+|....++++||..+|+++-..-+--+. .+.++.+.+=+...|.
T Consensus 53 ~~~~~~~f~~vE~a---Lei~lh~~I~~fy~s~~s~dm~a~~~~~~~~LlQvWsedDF~rLQeNliGH 117 (181)
T PRK04968 53 PFEPEGNFNNVERA---LEITLHPDIHAFYTTQFAGDMTAQFGGGELTLLQVWSEDDFERLQENLIGH 117 (181)
T ss_pred ccCCcccHHHHHHh---hcCeecHHHHHHHhhhhcCCcceEeCCceEEEEEeccHHHHHHHHHHHHHH
Confidence 34455555555442 34458999999999999886443332222 2445555533334444
No 84
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=35.61 E-value=48 Score=18.75 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=22.4
Q ss_pred cCCCCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 46 YSSNLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 46 Y~~~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
|..+.-.+.+..+.+.+++...|.+.|+
T Consensus 8 ~~~~~~~~~~~~~~s~~dL~~~i~~~~~ 35 (81)
T smart00666 8 YGGETRRLSVPRDISFEDLRSKVAKRFG 35 (81)
T ss_pred ECCEEEEEEECCCCCHHHHHHHHHHHhC
Confidence 4555566777778999999999999997
No 85
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=35.43 E-value=33 Score=19.49 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=22.1
Q ss_pred cCCCCcE-EEEEcCCCHHHHHHHHHHHhhcc
Q 045879 46 YSSNLMH-LVVYSKESVDKIQGLVENKFQDI 75 (96)
Q Consensus 46 Y~~~~~~-l~v~G~~~~~~l~~~v~~~f~~~ 75 (96)
|..+... +.+..+.+.+++.+.|.+.|+..
T Consensus 8 ~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~ 38 (84)
T PF00564_consen 8 YGGDIRRIISLPSDVSFDDLRSKIREKFGLL 38 (84)
T ss_dssp ETTEEEEEEEECSTSHHHHHHHHHHHHHTTS
T ss_pred ECCeeEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 4455555 77778888888888888888754
No 86
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.17 E-value=1.3e+02 Score=22.18 Aligned_cols=37 Identities=8% Similarity=-0.006 Sum_probs=26.4
Q ss_pred hHHHHHHHHHhh-cCCCCcEEEEEcCCCHHHHHHHHHH
Q 045879 34 TRHELIKFYNEH-YSSNLMHLVVYSKESVDKIQGLVEN 70 (96)
Q Consensus 34 ~~~~l~~f~~~~-Y~~~~~~l~v~G~~~~~~l~~~v~~ 70 (96)
+.+++++--+.- =...+..+-++|+++++.+.++++.
T Consensus 229 ~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~t 266 (289)
T PRK07896 229 PVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAET 266 (289)
T ss_pred CHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhc
Confidence 566666666430 0246889999999999998888764
No 87
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.90 E-value=1.2e+02 Score=22.23 Aligned_cols=37 Identities=11% Similarity=0.077 Sum_probs=25.8
Q ss_pred hHHHHHHHHH---hhcCCCCcEEEEEcCCCHHHHHHHHHH
Q 045879 34 TRHELIKFYN---EHYSSNLMHLVVYSKESVDKIQGLVEN 70 (96)
Q Consensus 34 ~~~~l~~f~~---~~Y~~~~~~l~v~G~~~~~~l~~~v~~ 70 (96)
+.+++++--. +.....++.+.++|+++++.+.++++.
T Consensus 212 ~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~t 251 (278)
T PRK08385 212 TPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKL 251 (278)
T ss_pred CHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHc
Confidence 4555554443 333345899999999999999888764
No 88
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=34.43 E-value=31 Score=20.86 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=12.6
Q ss_pred hHHHHHHHHHhhcCC
Q 045879 34 TRHELIKFYNEHYSS 48 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~ 48 (96)
...+|.+||++|+..
T Consensus 11 ni~eLi~fY~ky~~~ 25 (85)
T PF07240_consen 11 NIQELIAFYEKYSPR 25 (85)
T ss_pred hHHHHHHHHHHcCcc
Confidence 578899999997765
No 89
>PRK02496 adk adenylate kinase; Provisional
Probab=34.36 E-value=1.2e+02 Score=19.85 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=23.5
Q ss_pred hcCCCCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 45 HYSSNLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 45 ~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
+|......+.|-|.-+.+++.+.|.+.++
T Consensus 155 ~~~~~~~~~~Ida~~~~~~V~~~i~~~l~ 183 (184)
T PRK02496 155 YYRDRQKLLTIDGNQSVEAVTTELKAALA 183 (184)
T ss_pred HHHhcCCEEEEECCCCHHHHHHHHHHHhC
Confidence 66666678999999999999988877653
No 90
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=34.34 E-value=29 Score=20.03 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=21.0
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCC
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKES 60 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~ 60 (96)
+.+++++||...| |.-.+-.|.|..-
T Consensus 24 spe~V~dfYs~~Y-PeLttA~v~gP~~ 49 (66)
T TIGR03738 24 SPEQVRDFYSAQY-PELLNAEVEGPVV 49 (66)
T ss_pred CHHHHHHHHhccC-chheeeeeeCCeE
Confidence 8999999999876 6677777777653
No 91
>PF14285 DUF4367: Domain of unknown function (DUF4367)
Probab=34.29 E-value=59 Score=20.79 Aligned_cols=26 Identities=8% Similarity=0.114 Sum_probs=20.3
Q ss_pred hcCCCCcEEEE-EcCCCHHHHHHHHHH
Q 045879 45 HYSSNLMHLVV-YSKESVDKIQGLVEN 70 (96)
Q Consensus 45 ~Y~~~~~~l~v-~G~~~~~~l~~~v~~ 70 (96)
.+.-+++.+.+ +|+++.+++.++++.
T Consensus 141 ~W~~~~~~~~i~~g~i~~eElikIaes 167 (168)
T PF14285_consen 141 MWEDDGYYYQIFSGNISKEELIKIAES 167 (168)
T ss_pred EEEECCEEEEEEeCCCCHHHHHHHHhc
Confidence 34456777778 799999999998863
No 92
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=34.11 E-value=1.4e+02 Score=22.35 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEc----CCCHHHHHHHHHHHhh
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYS----KESVDKIQGLVENKFQ 73 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G----~~~~~~l~~~v~~~f~ 73 (96)
..+++.+.+++.-.++.+ ++++| .++.+...++++....
T Consensus 115 ~~~~~l~~~~~~l~~~d~-VvlsGSlP~g~~~d~y~~li~~~~~ 157 (310)
T COG1105 115 ELEQFLEQLKALLESDDI-VVLSGSLPPGVPPDAYAELIRILRQ 157 (310)
T ss_pred HHHHHHHHHHHhcccCCE-EEEeCCCCCCCCHHHHHHHHHHHHh
Confidence 355566666655555555 99999 6777877777776665
No 93
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=34.09 E-value=69 Score=19.07 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=27.0
Q ss_pred hHHHHHHHHHhhc--------CCCCcEEEEEcCCCHHHHHHHHHH
Q 045879 34 TRHELIKFYNEHY--------SSNLMHLVVYSKESVDKIQGLVEN 70 (96)
Q Consensus 34 ~~~~l~~f~~~~Y--------~~~~~~l~v~G~~~~~~l~~~v~~ 70 (96)
.++||+++...-. .+-...|.|-|+.. +++.+|+.+
T Consensus 41 L~~dL~~~l~~~~~~~~~~~V~~~~g~i~IkG~~~-~~Vk~wL~~ 84 (87)
T PF05046_consen 41 LKKDLRKFLGEKPKKKIDVRVNELTGHIEIKGDHV-EEVKKWLLE 84 (87)
T ss_pred HHHHHHHHhhhhcCCCcceEEeecCCEEEEcCccH-HHHHHHHHH
Confidence 5778888885443 46678899999986 778888753
No 94
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.57 E-value=62 Score=19.97 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=24.3
Q ss_pred CCCcEEEEEcC-CCHHHHHHHHHHHhhcccC
Q 045879 48 SNLMHLVVYSK-ESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 48 ~~~~~l~v~G~-~~~~~l~~~v~~~f~~~~~ 77 (96)
..|+.+.|.|+ ++.+++++.++++=+.+.+
T Consensus 48 t~~~~itIeG~~ldydei~~~iE~~Gg~IHS 78 (97)
T COG1888 48 TENLKITIEGTNLDYDEIEEVIEELGGAIHS 78 (97)
T ss_pred hcceEEEEEcCCCCHHHHHHHHHHcCCeeee
Confidence 35788889996 9999999999887666654
No 95
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=33.46 E-value=98 Score=21.35 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=25.4
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHH
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQG 66 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~ 66 (96)
-...++.||+.||-.-...|.|+---|...+++
T Consensus 69 Gq~~lr~~W~nYfestdglIwvvDssD~~r~~e 101 (185)
T KOG0073|consen 69 GQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQE 101 (185)
T ss_pred CcchhHHHHHHhhhccCeEEEEEECchHHHHHH
Confidence 466799999999999998888887766444433
No 96
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=33.35 E-value=76 Score=24.64 Aligned_cols=40 Identities=10% Similarity=0.298 Sum_probs=27.7
Q ss_pred hHHHHHHHHHhhcCCCC----cEEEEEcCCCHHHHHHHHHH-HhhcccC
Q 045879 34 TRHELIKFYNEHYSSNL----MHLVVYSKESVDKIQGLVEN-KFQDIRN 77 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~----~~l~v~G~~~~~~l~~~v~~-~f~~~~~ 77 (96)
...+|.+||+ ||+..+ .+|+|-||.+ ....+.+ .+|+|-+
T Consensus 57 Ky~~m~~F~~-YYsge~~APVlTIFIGGNHE---AsnyL~eLpyGGwVA 101 (456)
T KOG2863|consen 57 KYRRMGDFYK-YYSGEIKAPVLTIFIGGNHE---ASNYLQELPYGGWVA 101 (456)
T ss_pred HHHHHHHHHH-HhCCcccCceeEEEecCchH---HHHHHHhcccCceec
Confidence 5788999995 887654 6899999876 3344433 3676654
No 97
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=32.87 E-value=94 Score=17.36 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=22.9
Q ss_pred hcCCCCcEEEEE-cCCCHHHHHHHHHHHhhc
Q 045879 45 HYSSNLMHLVVY-SKESVDKIQGLVENKFQD 74 (96)
Q Consensus 45 ~Y~~~~~~l~v~-G~~~~~~l~~~v~~~f~~ 74 (96)
+|..+...+.+. .+.+.+++.+.|.+.|+.
T Consensus 6 ~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~ 36 (81)
T cd05992 6 KYGGEIRRFVVVSRSISFEDLRSKIAEKFGL 36 (81)
T ss_pred EecCCCEEEEEecCCCCHHHHHHHHHHHhCC
Confidence 455666777777 788888888888888864
No 98
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=32.48 E-value=1.9e+02 Score=22.29 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhh--cCCCCcEEEEEcC--CCHHHHHHHHHHHhh
Q 045879 34 TRHELIKFYNEH--YSSNLMHLVVYSK--ESVDKIQGLVENKFQ 73 (96)
Q Consensus 34 ~~~~l~~f~~~~--Y~~~~~~l~v~G~--~~~~~l~~~v~~~f~ 73 (96)
+.+||.+.|++. ...+..-+++.|. ++++|+.++.+-+-+
T Consensus 271 ~~~dl~~~~~~l~~~~~~~~D~V~lGcPH~S~~El~~ia~ll~g 314 (400)
T PF04412_consen 271 TDADLEEVYEELNTAGDEKVDLVALGCPHLSLEELREIAELLEG 314 (400)
T ss_pred CHHHHHHHHHHhccCCCCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 899999999998 8888999999998 899999886554443
No 99
>cd01096 Alkanal_monooxygenase Alkanal monooxygenase are flavin monoxygenases. Molecular oxygen is activated by reaction with reduced flavin mononucleotide (FMNH2) and reacts with an aldehyde to yield the carboxylic acid, oxidized flavin (FMN) and a blue-green light. Bacterial luciferases are heterodimers made of alpha and beta subunits which are homologous. The single activer center is on the alpha subunit. The alpha subunit has a stretch of 30 amino acid residues that is not present in the beta subunit. The beta subunit does not contain the active site and is required for the formation of the fully active heterodimer. The beta subunit does not contribute anything directly to the active site. Its role is probably to stabilize the high quantum yield conformation of the alpha subunit through interactionbs across the subunit interface.
Probab=32.28 E-value=1.4e+02 Score=21.54 Aligned_cols=44 Identities=16% Similarity=-0.006 Sum_probs=26.7
Q ss_pred CCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHH
Q 045879 14 KFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVE 69 (96)
Q Consensus 14 ~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~ 69 (96)
+.++|+.+++.+ .|++++++ ..-+++.+.+.|..++++..+.++
T Consensus 270 ~~~vGtpe~v~~-----------~l~~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~ 313 (315)
T cd01096 270 ENAVGTPEECIE-----------IIQLAIEA-TGIKNILLSFESMGSEDEIIASIN 313 (315)
T ss_pred hcCCCCHHHHHH-----------HHHHHHHH-hCCCeEEEeccCCCCHHHHHHHHh
Confidence 345677666533 34455543 466777777776667777666554
No 100
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.12 E-value=36 Score=23.94 Aligned_cols=16 Identities=13% Similarity=0.223 Sum_probs=13.2
Q ss_pred hhcCCCCcEEEEEcCC
Q 045879 44 EHYSSNLMHLVVYSKE 59 (96)
Q Consensus 44 ~~Y~~~~~~l~v~G~~ 59 (96)
+++...||++++.||-
T Consensus 105 rq~~~~NmvImLiGNK 120 (216)
T KOG0098|consen 105 RQHSNENMVIMLIGNK 120 (216)
T ss_pred HHhcCCCcEEEEEcch
Confidence 4566889999999984
No 101
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=31.94 E-value=51 Score=15.95 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=9.5
Q ss_pred CCcchHHHHHHHHHh
Q 045879 30 KGLDTRHELIKFYNE 44 (96)
Q Consensus 30 ~~~~~~~~l~~f~~~ 44 (96)
.|+ +.+++++|.+.
T Consensus 15 ~Gl-s~eeir~FL~~ 28 (30)
T PF08671_consen 15 SGL-SKEEIREFLEF 28 (30)
T ss_dssp TT---HHHHHHHHHH
T ss_pred cCC-CHHHHHHHHHh
Confidence 454 89999999864
No 102
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=31.92 E-value=35 Score=20.58 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=12.9
Q ss_pred CCcEEEEE-cCCCH-HHHHHHHHH
Q 045879 49 NLMHLVVY-SKESV-DKIQGLVEN 70 (96)
Q Consensus 49 ~~~~l~v~-G~~~~-~~l~~~v~~ 70 (96)
++|++++. |+... +++.+.+++
T Consensus 44 SRmtivv~~~d~~~ieqI~kQL~K 67 (84)
T PRK13562 44 SNMEIQVDIQDDTSLHILIKKLKQ 67 (84)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHhC
Confidence 48999996 76542 344444433
No 103
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=31.62 E-value=1.7e+02 Score=20.17 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=23.2
Q ss_pred cCCcchHHHHHHHHHhhcCCC--CcEEEEEcCC
Q 045879 29 AKGLDTRHELIKFYNEHYSSN--LMHLVVYSKE 59 (96)
Q Consensus 29 ~~~~~~~~~l~~f~~~~Y~~~--~~~l~v~G~~ 59 (96)
.-|.+..+.|.+|.+.+-.+. +.+|+|+||.
T Consensus 127 ~GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg 159 (222)
T PF05762_consen 127 GGGTDIGQALREFLRQYARPDLRRTTVVIISDG 159 (222)
T ss_pred CCccHHHHHHHHHHHHhhcccccCcEEEEEecc
Confidence 345556788888888766555 8899999987
No 104
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=31.60 E-value=1.4e+02 Score=18.82 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHh
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKF 72 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f 72 (96)
+....++|.+.|-.+-..+-...-..+.+++.+++.+.-
T Consensus 13 t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g 51 (117)
T COG1393 13 TCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLG 51 (117)
T ss_pred HHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcC
Confidence 778889999999999888888888999999999987654
No 105
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=31.43 E-value=73 Score=21.12 Aligned_cols=28 Identities=11% Similarity=0.080 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCHHHHHHHHHHHhhcccC
Q 045879 50 LMHLVVYSKESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 50 ~~~l~v~G~~~~~~l~~~v~~~f~~~~~ 77 (96)
++.|+++|+.....+.+.+++|...++.
T Consensus 1 ki~I~~vGk~k~~~~~~~i~~Y~kRl~~ 28 (153)
T TIGR00246 1 KINLVAVGTKKPKWVKTGFEEYTRRFPK 28 (153)
T ss_pred CEEEEEEeccCcHHHHHHHHHHHHhcCC
Confidence 3678888887666677888888776654
No 106
>PRK14530 adenylate kinase; Provisional
Probab=31.34 E-value=1.5e+02 Score=20.06 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=27.9
Q ss_pred HHHHHHHHH------hhcCCCCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 35 RHELIKFYN------EHYSSNLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 35 ~~~l~~f~~------~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
++.|..|++ +||....+.+.|-|.-+.+++.+.|...+.
T Consensus 168 ~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 212 (215)
T PRK14530 168 RERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAID 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHh
Confidence 444555554 455555678899999999999988877664
No 107
>COG1765 Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=31.15 E-value=65 Score=20.73 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=19.3
Q ss_pred CCcEEEEEcCCCHHHHHHHHHHH
Q 045879 49 NLMHLVVYSKESVDKIQGLVENK 71 (96)
Q Consensus 49 ~~~~l~v~G~~~~~~l~~~v~~~ 71 (96)
-++.+.|.|+++.+++.+.++.-
T Consensus 90 i~i~~~v~gd~~~e~~~~~i~~a 112 (137)
T COG1765 90 INIHFVVKGDLDEEKLKRAVELA 112 (137)
T ss_pred EEEEEEEecCCCHHHHHHHHHHH
Confidence 67999999999988888887643
No 108
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic. Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....
Probab=31.03 E-value=32 Score=23.09 Aligned_cols=31 Identities=10% Similarity=0.076 Sum_probs=24.0
Q ss_pred cCCCCcEEEEEcCCCHHHHHHHHHHHhhccc
Q 045879 46 YSSNLMHLVVYSKESVDKIQGLVENKFQDIR 76 (96)
Q Consensus 46 Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~ 76 (96)
+...--=|++.|.-.+++...|+.++|-+|.
T Consensus 52 tTdtG~Piv~~G~~~L~~havwslkcFPDWe 82 (162)
T PF03284_consen 52 TTDTGEPIVIRGRDRLAEHAVWSLKCFPDWE 82 (162)
T ss_dssp S-TTSS-EEEESHHHHHHHHHHHHHHSTT-E
T ss_pred cCCCCceEEEEhHHHHHHHHHHHHHHCCCcE
Confidence 3444556999999999999999999999874
No 109
>PF01152 Bac_globin: Bacterial-like globin; InterPro: IPR001486 Globins are haem-containing proteins involved in binding and/or transporting oxygen. They belong to a very large and well studied family that is widely distributed in many organisms []. Globins have evolved from a common ancestor and can be divided into three groups: single-domain globins, and two types of chimeric globins, flavohaemoglobins and globin-coupled sensors. Bacteria have all three types of globins, while archaea lack flavohaemoglobins, and eukaryotes lack globin-coupled sensors []. Several functionally different haemoglobins can coexist in the same species. The major types of globins include: Haemoglobin (Hb): trimer of two alpha and two beta chains, although embryonic and foetal forms can substitute the alpha or beta chain for ones with higher oxygen affinity, such as gamma, delta, epsilon or zeta chains. Hb transports oxygen from lungs to other tissues in vertebrates []. Hb proteins are also present in unicellular organisms where they act as enzymes or sensors []. Myoglobin (Mb): monomeric protein responsible for oxygen storage in vertebrate muscle []. Neuroglobin: a myoglobin-like haemprotein expressed in vertebrate brain and retina, where it is involved in neuroprotection from damage due to hypoxia or ischemia []. Neuroglobin belongs to a branch of the globin family that diverged early in evolution. Cytoglobin: an oxygen sensor expressed in multiple tissues. Related to neuroglobin []. Erythrocruorin: highly cooperative extracellular respiratory proteins found in annelids and arthropods that are assembled from as many as 180 subunit into hexagonal bilayers []. Leghaemoglobin (legHb or symbiotic Hb): occurs in the root nodules of leguminous plants, where it facilitates the diffusion of oxygen to symbiotic bacteriods in order to promote nitrogen fixation. Non-symbiotic haemoglobin (NsHb): occurs in non-leguminous plants, and can be over-expressed in stressed plants []. Flavohaemoglobins (FHb): chimeric, with an N-terminal globin domain and a C-terminal ferredoxin reductase-like NAD/FAD-binding domain. FHb provides protection against nitric oxide via its C-terminal domain, which transfers electrons to haem in the globin []. Globin-coupled sensors: chimeric, with an N-terminal myoglobin-like domain and a C-terminal domain that resembles the cytoplasmic signalling domain of bacterial chemoreceptors. They bind oxygen, and act to initiate an aerotactic response or regulate gene expression [, ]. Protoglobin: a single domain globin found in archaea that is related to the N-terminal domain of globin-coupled sensors []. Truncated 2/2 globin: lack the first helix, giving them a 2-over-2 instead of the canonical 3-over-3 alpha-helical sandwich fold. Can be divided into three main groups (I, II and II) based on structural features []. This entry represents a group of haemoglobin-like proteins found in eubacteria, cyanobacteria, protozoa, algae and plants, but not in animals or yeast. These proteins have a truncated 2-over-2 rather than the canonical 3-over-3 alpha-helical sandwich fold []. This entry includes: HbN (or GlbN): a truncated haemoglobin-like protein that binds oxygen cooperatively with a very high affinity and a slow dissociation rate, which may exclude it from oxygen transport. It appears to be involved in bacterial nitric oxide detoxification and in nitrosative stress []. Cyanoglobin (or GlbN): a truncated haemoprotein found in cyanobacteria that has high oxygen affinity, and which appears to serve as part of a terminal oxidase, rather than as a respiratory pigment []. HbO (or GlbO): a truncated haemoglobin-like protein with a lower oxygen affinity than HbN. HbO associates with the bacterial cell membrane, where it significantly increases oxygen uptake over membranes lacking this protein. HbO appears to interact with a terminal oxidase, and could participate in an oxygen/electron-transfer process that facilitates oxygen transfer during aerobic metabolism []. Glb3: a nuclear-encoded truncated haemoglobin from plants that appears more closely related to HbO than HbN. Glb3 from Arabidopsis thaliana (Mouse-ear cress) exhibits an unusual concentration-independent binding of oxygen and carbon dioxide []. ; GO: 0019825 oxygen binding, 0015671 oxygen transport; PDB: 2BKM_B 1UVY_A 1DLW_A 2XYK_B 2IG3_A 2GKM_B 1S61_A 1S56_B 1RTE_B 2GLN_A ....
Probab=30.76 E-value=26 Score=21.47 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCC
Q 045879 35 RHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNT 78 (96)
Q Consensus 35 ~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~ 78 (96)
+.-+..||++-+.-..+.=... +.+.+.+.+.+.+++..+-.+
T Consensus 13 ~~lv~~fY~rv~~d~~l~~~F~-~~d~~~~~~~~~~fl~~~~GG 55 (120)
T PF01152_consen 13 RALVDAFYDRVLADPRLKPFFE-GIDLEKHKEKQAEFLSQLLGG 55 (120)
T ss_dssp HHHHHHHHHHHHT-TTTGGGGT-TSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCHHHHhhcC-CCCHHHHHHHHHHHHHHHhCC
Confidence 4448899999888776444444 778888888888888876544
No 110
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=30.73 E-value=40 Score=19.31 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCC
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKE 59 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~ 59 (96)
+.+++++||...| |.-.+-.|.|..
T Consensus 25 spe~V~~~ya~~Y-PeL~tA~v~gP~ 49 (65)
T PF14454_consen 25 SPEEVRDFYAAQY-PELTTAEVEGPE 49 (65)
T ss_pred CHHHHHHHHhhhC-hhhheeeecCCe
Confidence 8999999999986 556666666653
No 111
>cd06552 ASCH_yqfb_like ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=30.45 E-value=1.1e+02 Score=17.96 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=16.2
Q ss_pred CCcchHHHHHHHHHhhcCCC--CcEEEE
Q 045879 30 KGLDTRHELIKFYNEHYSSN--LMHLVV 55 (96)
Q Consensus 30 ~~~~~~~~l~~f~~~~Y~~~--~~~l~v 55 (96)
.|..+.+++++.++++|... ++.+.+
T Consensus 68 eG~~s~~~~~~~l~~~Y~~~~~~~~v~v 95 (100)
T cd06552 68 EGFPSLEELKEALKEIYPGLKDDDEVYV 95 (100)
T ss_pred cCCccHHHHHHHHHHHcCCCCCCCEEEE
Confidence 34446777777777777663 355444
No 112
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=30.44 E-value=91 Score=20.30 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=24.4
Q ss_pred hcCCCCcEEEEEcC--CCHHHHHHHHHHHhh
Q 045879 45 HYSSNLMHLVVYSK--ESVDKIQGLVENKFQ 73 (96)
Q Consensus 45 ~Y~~~~~~l~v~G~--~~~~~l~~~v~~~f~ 73 (96)
.|.|..+.-+++|+ -+-+++..+|.+.++
T Consensus 100 e~~P~~vKk~~tG~G~A~KeqV~~mv~~~l~ 130 (154)
T cd00529 100 EYTPNQVKKAVTGYGKADKDQVQHMVKRLLN 130 (154)
T ss_pred EEccCeeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899888888766 788899999999986
No 113
>PF04536 TPM: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.
Probab=30.33 E-value=1.1e+02 Score=18.25 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCC
Q 045879 35 RHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNT 78 (96)
Q Consensus 35 ~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~ 78 (96)
.+.+.++.++ +.-++.++++..++-..+++++.++|..|.-+
T Consensus 11 ~~~l~~~~~~--t~~~i~Vvtv~~~~~~~~~~~A~~~~~~~~~g 52 (119)
T PF04536_consen 11 NQALAKLEKK--TGVQIVVVTVPSLPGQDIEDYAQQLFERWGLG 52 (119)
T ss_dssp HHHHHHHHHH--C--EEEEEEESB-TTS-HHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHh--hCCEEEEEEEcCCCCCCHHHHHHHHHHHhCCC
Confidence 5556677543 33388889999987688999999999998644
No 114
>PF05397 Med15_fungi: Mediator complex subunit 15; InterPro: IPR008626 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family represents subunit 15 of the Mediator complex in fungi. It contains Saccharomyces cerevisiae GAL11 (Med15) protein. Gal11 (Med15) and Sin4 (Med16) proteins are S. cerevisiae global transcription factors that regulate transcription of a variety of genes, both positively and negatively. Gal11, in a major part, functions in the activation of transcription, whereas Sin4 has an opposite role [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.25 E-value=66 Score=20.29 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=36.8
Q ss_pred CCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhccc
Q 045879 16 STGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIR 76 (96)
Q Consensus 16 ~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~ 76 (96)
..|+++.++++ =.|+-+.++.+---.--.++++.-.++.+...+.+||+-++
T Consensus 61 lt~ne~~~k~L---------lqMr~~~~~q~e~~~~~~f~~~pd~l~k~~~~~~kyf~~mk 112 (115)
T PF05397_consen 61 LTKNEENTKRL---------LQMRIMLKEQFEWLPQGQFTIKPDYLDKLINQIQKYFEYMK 112 (115)
T ss_pred hcCcHHHHHHH---------HHHHHHHHHHHhhhhcCceeecHHHHHHHHHHHHHHHHHHH
Confidence 35666666653 34777777777444445788888888889889999998654
No 115
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=30.13 E-value=97 Score=22.32 Aligned_cols=29 Identities=10% Similarity=0.143 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHH
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVD 62 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~ 62 (96)
..++|.+|.++.-.|.+..++|+||++.+
T Consensus 161 Q~~~i~~~i~~~~~~~~~pvIl~GDfN~~ 189 (283)
T TIGR03395 161 QLNEIQDFIDSKNIPKDETVLIGGDLNVN 189 (283)
T ss_pred HHHHHHHHHhhccCCCCceEEEEeeCCCC
Confidence 45677778766556667789999999854
No 116
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=30.01 E-value=46 Score=21.38 Aligned_cols=41 Identities=15% Similarity=0.381 Sum_probs=33.3
Q ss_pred hHHHHHHHHHhhcCCC-----CcEEEEEcCCCHHHHHHHHHHHhhc
Q 045879 34 TRHELIKFYNEHYSSN-----LMHLVVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~-----~~~l~v~G~~~~~~l~~~v~~~f~~ 74 (96)
..+.+..|+..-..+. +-.++|.|.++.+++++++.+|...
T Consensus 47 ~p~~~~ky~~~ELgt~~~id~~~~lii~G~~~~~~i~~~L~~fI~~ 92 (125)
T PF01873_consen 47 DPEHVLKYFGKELGTQGSIDGKGRLIINGRFSSKQIQDLLDKFIKE 92 (125)
T ss_dssp SHHHHHHHHHHHSSSEEEEETTTEEEEESSSSCCHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHCCceEECCCCEEEEEEecCHHHHHHHHHHHHHH
Confidence 4778888988765543 2689999999999999999999765
No 117
>PF07788 DUF1626: Protein of unknown function (DUF1626); InterPro: IPR012431 This is a family consisting of sequences from hypothetical proteins of unknown function expressed by certain species of archaea. One member (Q9YCN7 from SWISSPROT) is thought to be similar to tropomyosin [].
Probab=29.85 E-value=1.2e+02 Score=17.60 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=22.9
Q ss_pred HHHHHHHHhhcCCC-CcEEEEEcCCCHHHHHHHHHH
Q 045879 36 HELIKFYNEHYSSN-LMHLVVYSKESVDKIQGLVEN 70 (96)
Q Consensus 36 ~~l~~f~~~~Y~~~-~~~l~v~G~~~~~~l~~~v~~ 70 (96)
..-..||.+...-. +-.++|+..++ +.+.+++++
T Consensus 32 ~rk~~lYek~~grk~~r~ivVtp~id-~~a~~~A~~ 66 (70)
T PF07788_consen 32 KRKAELYEKVHGRKVDRLIVVTPYID-DRAKEMAEE 66 (70)
T ss_pred HHHHHHHHHHHCCCcceEEEEEeecC-HHHHHHHHH
Confidence 34557788877776 55666777788 667776654
No 118
>PTZ00432 falcilysin; Provisional
Probab=29.81 E-value=1.1e+02 Score=26.76 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=33.8
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCC-CHHHHHHHHHHHhhccc
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKE-SVDKIQGLVENKFQDIR 76 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~-~~~~l~~~v~~~f~~~~ 76 (96)
..+.|.+.+++-+..+||.+.|+|+. ..+.+.+.+..++..++
T Consensus 855 v~~~L~~i~~~i~~~~~l~~~vt~~~~~~~~~~~~~~~~~~~l~ 898 (1119)
T PTZ00432 855 VESKLNEIRNKLLSMKNLTVNVTGDSELLDSLLDDSTTFLKKLS 898 (1119)
T ss_pred HHHHHHHHHHHHhCcCCcEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 45668888888899999999999997 45566676667777664
No 119
>PF08987 DUF1892: Protein of unknown function (DUF1892); InterPro: IPR015080 Proteins in this entry, which are synthesised by Saccharomycetes, adopt a structure consisting of a four-stranded beta-sheet, with strand order beta2-beta1-beta4-beta3, and two alpha-helices, with an overall topology of beta-beta-alpha-beta-beta-alpha. They have no known function []. ; PDB: 1N6Z_A.
Probab=29.79 E-value=1.4e+02 Score=19.02 Aligned_cols=45 Identities=11% Similarity=0.313 Sum_probs=31.6
Q ss_pred CcchHHHHHHHHHhh---------------cCCCCcEEEEEcCCCH-HHHHHHHHHHhhccc
Q 045879 31 GLDTRHELIKFYNEH---------------YSSNLMHLVVYSKESV-DKIQGLVENKFQDIR 76 (96)
Q Consensus 31 ~~~~~~~l~~f~~~~---------------Y~~~~~~l~v~G~~~~-~~l~~~v~~~f~~~~ 76 (96)
++.+.+.|-.||.++ .+++-+++.++- ..+ +++.+.|.+|-....
T Consensus 47 ~v~~~d~lN~wFDkFDEeIciPNEGhIKYEI~SDGLVVlilD-kel~e~vv~~v~~fv~~~~ 107 (115)
T PF08987_consen 47 QVDEFDELNEWFDKFDEEICIPNEGHIKYEIGSDGLVVLILD-KELREEVVKFVKKFVEENE 107 (115)
T ss_dssp -TT-HHHHHHHHHHHHHHHHTT--S-EEEEEETTTEEEEEE--GGG-HHHHHHHHHHHHHH-
T ss_pred ccchHHHHHHHHHhhcceeecCCCCceEEEecCCcEEEEEEe-HHHHHHHHHHHHHHHHhcc
Confidence 456889999999987 356677777776 666 888888888766443
No 120
>PRK14527 adenylate kinase; Provisional
Probab=29.77 E-value=80 Score=20.90 Aligned_cols=30 Identities=10% Similarity=0.039 Sum_probs=23.8
Q ss_pred hhcCCCCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 44 EHYSSNLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 44 ~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
+||...++.+.|-|+-+.+++.+.|...+|
T Consensus 162 ~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 191 (191)
T PRK14527 162 DYYEARGHLKRVDGLGTPDEVYARILKALG 191 (191)
T ss_pred HHHHhcCCEEEEECCCCHHHHHHHHHHhhC
Confidence 356666789999999999999888876653
No 121
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=29.29 E-value=34 Score=20.07 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=11.7
Q ss_pred CcEEEEEcCCC-HHHHHHHHHH
Q 045879 50 LMHLVVYSKES-VDKIQGLVEN 70 (96)
Q Consensus 50 ~~~l~v~G~~~-~~~l~~~v~~ 70 (96)
+|++++.|+-+ .+++.+.+++
T Consensus 45 riti~~~~~~~~i~qi~kQL~K 66 (76)
T PRK06737 45 EMKLTAVCTENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEECCHHHHHHHHHHHhC
Confidence 78888887532 3344444443
No 122
>PTZ00323 NAD+ synthase; Provisional
Probab=28.29 E-value=1.2e+02 Score=22.24 Aligned_cols=40 Identities=8% Similarity=-0.023 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhc
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~ 74 (96)
..+.|++|.++ .....++|.++|.+|-.-+..++.+.++.
T Consensus 33 ~~~~L~~~l~~-~g~~~vVVglSGGVDSav~aaLa~~alg~ 72 (294)
T PTZ00323 33 KCAKLNEYMRR-CGLKGCVTSVSGGIDSAVVLALCARAMRM 72 (294)
T ss_pred HHHHHHHHHHH-cCCCcEEEECCCCHHHHHHHHHHHHHhcc
Confidence 45667777765 55789999999999966666667777764
No 123
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=28.19 E-value=69 Score=18.19 Aligned_cols=23 Identities=9% Similarity=0.063 Sum_probs=14.4
Q ss_pred CCCcEEEEEcCCCHHHHHHHHHH
Q 045879 48 SNLMHLVVYSKESVDKIQGLVEN 70 (96)
Q Consensus 48 ~~~~~l~v~G~~~~~~l~~~v~~ 70 (96)
++.......|..+.+++.+++++
T Consensus 78 ~~~~~~~~~g~~~~~~l~~~i~~ 100 (102)
T TIGR01126 78 KGKKPVDYEGGRDLEAIVEFVNE 100 (102)
T ss_pred CCCcceeecCCCCHHHHHHHHHh
Confidence 34434556677777777777765
No 124
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=28.09 E-value=83 Score=17.83 Aligned_cols=26 Identities=4% Similarity=0.105 Sum_probs=18.4
Q ss_pred cCCCCcEEEEEcCCCHHHHHHHHHHH
Q 045879 46 YSSNLMHLVVYSKESVDKIQGLVENK 71 (96)
Q Consensus 46 Y~~~~~~l~v~G~~~~~~l~~~v~~~ 71 (96)
|..+...--+.|..+.+++.++|++.
T Consensus 78 ~~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 78 FKNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred EECCcEEEEEECCCCHHHHHHHHHcC
Confidence 44455555778888888888888763
No 125
>PRK04182 cytidylate kinase; Provisional
Probab=28.05 E-value=1.6e+02 Score=18.64 Aligned_cols=39 Identities=18% Similarity=0.316 Sum_probs=25.9
Q ss_pred HHHHHhhcC-----CCCcEEEEE-cCCCHHHHHHHHHHHhhcccC
Q 045879 39 IKFYNEHYS-----SNLMHLVVY-SKESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 39 ~~f~~~~Y~-----~~~~~l~v~-G~~~~~~l~~~v~~~f~~~~~ 77 (96)
.++|+.+|. +++.-++|- ++.+++++.+.|.++...+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~~~~~~~ 176 (180)
T PRK04182 132 AKRYKEYYGIDIDDLSIYDLVINTSRWDPEGVFDIILTAIDKLLK 176 (180)
T ss_pred HHHHHHHhCCCccccccccEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence 356666663 334444444 568999999999888876543
No 126
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=27.83 E-value=89 Score=17.64 Aligned_cols=23 Identities=9% Similarity=-0.002 Sum_probs=19.8
Q ss_pred CCCcEEEEEcCCCHHHHHHHHHH
Q 045879 48 SNLMHLVVYSKESVDKIQGLVEN 70 (96)
Q Consensus 48 ~~~~~l~v~G~~~~~~l~~~v~~ 70 (96)
...=.+.+.|+++...+.+.+.+
T Consensus 39 ~~~~kvtV~g~~~p~~vl~~l~k 61 (73)
T KOG1603|consen 39 IKKQKVTVKGNVDPVKLLKKLKK 61 (73)
T ss_pred CCCCEEEEEEecCHHHHHHHHHh
Confidence 55668999999999999998876
No 127
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=27.69 E-value=94 Score=23.72 Aligned_cols=38 Identities=16% Similarity=0.400 Sum_probs=28.6
Q ss_pred HHHHHHHHhhcCC----CCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 36 HELIKFYNEHYSS----NLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 36 ~~l~~f~~~~Y~~----~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
++|..=.+++|.. +++.+.+.|.+++++..+.|+.+|.
T Consensus 170 ~eLi~Rl~~~~~~~~~~~~~~~~~~~~lPl~~~~~~id~H~~ 211 (377)
T PF14728_consen 170 EELIRRLKEHFPKQGVKDRFKISFSGPLPLQEYFEIIDQHFE 211 (377)
T ss_pred HHHHHHHHHhccccCcccceEEecCCCCcHHHHHHHHHHHHH
Confidence 3333333455554 6789999999999999999999986
No 128
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=27.62 E-value=1.8e+02 Score=20.39 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=31.5
Q ss_pred CcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHH
Q 045879 31 GLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVE 69 (96)
Q Consensus 31 ~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~ 69 (96)
|+...+++.++.+ =.|.+..|++.|+--+.++.+++.
T Consensus 138 g~l~~eeV~~~l~--~kP~~~~vIiTGr~ap~~lie~AD 174 (198)
T COG2109 138 GLLPLEEVVALLK--ARPEHTHVIITGRGAPPELIELAD 174 (198)
T ss_pred CCCCHHHHHHHHh--cCCCCcEEEEECCCCCHHHHHHHH
Confidence 5568899999998 589999999999988888888754
No 129
>PF08467 Luteo_P1-P2: Luteovirus RNA polymerase P1-P2/replicase; InterPro: IPR013674 This domain is found in RNA-dependent RNA polymerase P1-P2 fusion/replicase proteins in plant Luteoviruses. ; GO: 0003968 RNA-directed RNA polymerase activity
Probab=27.55 E-value=77 Score=23.87 Aligned_cols=41 Identities=22% Similarity=0.230 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhc
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~ 74 (96)
.+++...|.++|..-+||+|+=..+++++.+-.+++++-..
T Consensus 268 ~~~~A~~wIre~ir~kN~~Li~adevShATI~RYve~fcEk 308 (361)
T PF08467_consen 268 CRGDARTWIREHIRNKNSRLISADEVSHATINRYVENFCEK 308 (361)
T ss_pred hhhHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHhHH
Confidence 78899999999999999999988899999888888765443
No 130
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=27.25 E-value=2e+02 Score=20.97 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=25.7
Q ss_pred hHHHHHHHHHhh-cCCCCcEEEEEcCCCHHHHHHHHHH
Q 045879 34 TRHELIKFYNEH-YSSNLMHLVVYSKESVDKIQGLVEN 70 (96)
Q Consensus 34 ~~~~l~~f~~~~-Y~~~~~~l~v~G~~~~~~l~~~v~~ 70 (96)
+.+++++--+.- -...+..|.++|+++++.+.+++..
T Consensus 218 ~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~ 255 (277)
T TIGR01334 218 TPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEA 255 (277)
T ss_pred CHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhc
Confidence 566666665532 1245788999999999888887653
No 131
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=27.24 E-value=1.6e+02 Score=21.65 Aligned_cols=37 Identities=3% Similarity=0.020 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhh-cCCCCcEEEEEcCCCHHHHHHHHHH
Q 045879 34 TRHELIKFYNEH-YSSNLMHLVVYSKESVDKIQGLVEN 70 (96)
Q Consensus 34 ~~~~l~~f~~~~-Y~~~~~~l~v~G~~~~~~l~~~v~~ 70 (96)
+.+++++.-+.- ....+..+.++|+++++.+.+++..
T Consensus 219 ~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~t 256 (284)
T PRK06096 219 SPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADC 256 (284)
T ss_pred CHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhc
Confidence 566666665421 0124778888888888888877654
No 132
>PLN02674 adenylate kinase
Probab=27.21 E-value=89 Score=22.28 Aligned_cols=30 Identities=7% Similarity=0.158 Sum_probs=24.8
Q ss_pred hhcCCCCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 44 EHYSSNLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 44 ~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
+||...+..+.|-|+-+.+++.+.|.+.++
T Consensus 215 ~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l~ 244 (244)
T PLN02674 215 DYYAKKGVVANLHAEKPPKEVTAEVQKALS 244 (244)
T ss_pred HHHHhcCCEEEEECCCCHHHHHHHHHHHhC
Confidence 456667889999999999999998887653
No 133
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=27.21 E-value=1e+02 Score=18.41 Aligned_cols=29 Identities=14% Similarity=0.326 Sum_probs=22.5
Q ss_pred hcCCCCcEEEEEc--CCCHHHHHHHHHHHhh
Q 045879 45 HYSSNLMHLVVYS--KESVDKIQGLVENKFQ 73 (96)
Q Consensus 45 ~Y~~~~~~l~v~G--~~~~~~l~~~v~~~f~ 73 (96)
.|..+.+.+.+.. +.+.+++.+.|.+.|+
T Consensus 6 ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~ 36 (81)
T cd06396 6 TYNGESQSFLVSDSENTTWASVEAMVKVSFG 36 (81)
T ss_pred EECCeEEEEEecCCCCCCHHHHHHHHHHHhC
Confidence 4667777777777 7788888888888886
No 134
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=27.13 E-value=2e+02 Score=20.01 Aligned_cols=38 Identities=11% Similarity=-0.048 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHh
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKF 72 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f 72 (96)
+.+++.++--+.| +++++++-+|..+-.-+..++.+.+
T Consensus 12 ~~~~~l~~~~~~~-~~~~~~s~S~Gkds~VlL~l~~~~~ 49 (226)
T TIGR02057 12 TPQEIIAWSIVTF-PHGLVQTSAFGIQALVTLHLLSSIS 49 (226)
T ss_pred CHHHHHHHHHHHc-CCCEEEEecCCHHHHHHHHHHHHhh
Confidence 4556655554445 6678888887666556777777766
No 135
>PRK08084 DNA replication initiation factor; Provisional
Probab=26.75 E-value=88 Score=21.68 Aligned_cols=40 Identities=10% Similarity=0.122 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
..+.+.+.+.+.+..++..++++|+.+..++......+-+
T Consensus 115 ~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S 154 (235)
T PRK08084 115 WEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS 154 (235)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH
Confidence 4567788888888877788999999887775433333333
No 136
>PF09621 LcrR: Type III secretion system regulator (LcrR); InterPro: IPR022797 LcrR proteins are encoded within type III secretion operons and have been characterised in Yersinia as a regulator of the Low-Calcium Response (LCR). CesD2 of enteropathogenic Escherichia coli is a chaperone for the Type III Secretion Translocator Protein EspD.
Probab=26.75 E-value=36 Score=22.46 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=21.8
Q ss_pred CCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCC
Q 045879 13 HKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSN 49 (96)
Q Consensus 13 ~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~ 49 (96)
++.+.|+.+.+..-+. +.+.|..||.|+..+.
T Consensus 83 ~~~l~g~Vd~l~~s~l-----~~~rL~~Fy~r~~ga~ 114 (139)
T PF09621_consen 83 RKVLYGNVDVLRGSPL-----SSERLAQFYRRWTGAS 114 (139)
T ss_pred ceEEEEEeeeccCCCc-----cHHHHHHHHHHHhCCC
Confidence 4455666666665432 5688999999987664
No 137
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=26.62 E-value=63 Score=21.41 Aligned_cols=28 Identities=11% Similarity=0.254 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCHHHHHHHHHHHhhcccC
Q 045879 50 LMHLVVYSKESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 50 ~~~l~v~G~~~~~~l~~~v~~~f~~~~~ 77 (96)
++.|+++|+....-+.+.+++|...++.
T Consensus 2 ki~i~~vGk~k~~~~~~~~~eY~kRl~~ 29 (155)
T PF02590_consen 2 KIRIIAVGKLKEKFLKELIEEYLKRLSR 29 (155)
T ss_dssp EEEEEEESSS-SHHHHHHHHHHHHHHCT
T ss_pred EEEEEEEeccCcHHHHHHHHHHHHHcCc
Confidence 4678899998877788888888876654
No 138
>PF02664 LuxS: S-Ribosylhomocysteinase (LuxS); InterPro: IPR003815 In bacteria, the regulation of gene expression in response to changes in cell density is called quorum sensing. Quorum-sensing bacteria produce, release, and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. For example, enteric bacteria use quorum sensing to regulate several traits that allow them to establish and maintain infection in their host, including motility, biofilm formation, and virulence-specific genes []. The LuxS/AI-2 system is one of several quorum sensing mechanisms. AI-2 (autoinducer-2) is a signalling molecule that functions in interspecies communication by regulating niche-specific genes with diverse functions in various bacteria, often in response to population density. LuxS (S-ribosylhomocysteinase; 4.4.1.21 from EC) is an autoinducer-production protein that has a metabolic function as a component of the activated methyl cycle. LuxS converts S-ribosylhomocysteine to homocysteine and 4,5-dihydroxy-2,3-pentanedione (DPD); DPD can then spontaneously cyclise to active AI-2 [, ]. LuxS is a homodimeric iron-dependent metalloenzyme containing two identical tetrahedral metal-binding sites similar to those found in peptidases and amidases []. ; GO: 0005506 iron ion binding, 0009372 quorum sensing; PDB: 1J6X_B 1VGX_A 1INN_B 1VJE_B 1J6V_A 1VH2_A 1J6W_B 1JOE_B 1J98_A 1IE0_A ....
Probab=26.40 E-value=1.6e+02 Score=19.85 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=33.4
Q ss_pred cchHHHHHHHHHhhcCCC---C------------cEEEEEcCCCHHHHHHHHHHHhhcccCCC
Q 045879 32 LDTRHELIKFYNEHYSSN---L------------MHLVVYSKESVDKIQGLVENKFQDIRNTD 79 (96)
Q Consensus 32 ~~~~~~l~~f~~~~Y~~~---~------------~~l~v~G~~~~~~l~~~v~~~f~~~~~~~ 79 (96)
+-+.|.|.+-|-|..... + ..|++.|..+.+++.+++++.|..+-.-+
T Consensus 52 lHTlEHL~A~~lRn~~~~~~~~iI~~gPMGCrTGFYli~~g~~~~~~i~~l~~~~l~~i~~~~ 114 (157)
T PF02664_consen 52 LHTLEHLFATYLRNHLDGDKDKIIDFGPMGCRTGFYLILWGDPSSEDIADLLKETLEFILEFE 114 (157)
T ss_dssp HHHHHHHHHHHHHHHHSCTTEEEEEEEE-TTSSEEEEEEESS--HHHHHHHHHHHHHHHHT-S
T ss_pred hhHHHHHHHHHHhcCccCCCCeEEEecCcccccccEEEEeCCCCHHHHHHHHHHHHHHHHhcC
Confidence 346777777666666553 2 35788999999999999999999876533
No 139
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=26.32 E-value=21 Score=18.85 Aligned_cols=31 Identities=16% Similarity=0.081 Sum_probs=18.9
Q ss_pred CCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHh
Q 045879 7 SEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNE 44 (96)
Q Consensus 7 ~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~ 44 (96)
|.+.|+....+-..+.|... ..+-+.+|++|
T Consensus 25 W~g~~~~~~tWe~~~~l~~~-------~~~li~~f~~r 55 (55)
T PF00385_consen 25 WKGYPYSENTWEPEENLKNC-------FPELIEEFEKR 55 (55)
T ss_dssp ETTSSGGGEEEEEGGGCSSH-------CHHHHHHHHHH
T ss_pred ECCCCCCCCeEeeHHHHhHh-------hHHHHHHHhCC
Confidence 44556665556555666553 35668888775
No 140
>PRK14531 adenylate kinase; Provisional
Probab=26.28 E-value=1.8e+02 Score=19.13 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=23.5
Q ss_pred hhcCCCCcEEEEEcCCCHHHHHHHHHHHh
Q 045879 44 EHYSSNLMHLVVYSKESVDKIQGLVENKF 72 (96)
Q Consensus 44 ~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f 72 (96)
+||...++.+.|-|.-+.+++.+.+.+.+
T Consensus 154 ~~y~~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 154 DHYRQRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred HHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 45656678999999999999988887765
No 141
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=26.24 E-value=79 Score=24.97 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=44.4
Q ss_pred CCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCC
Q 045879 6 SSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNT 78 (96)
Q Consensus 6 ~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~ 78 (96)
+++.-|||....-+.++|.=+-.+-.+.....|..|.++.+.+..+-+++-|.==---|-.|.+-.+-.|..+
T Consensus 122 YGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~G 194 (492)
T KOG2183|consen 122 YGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLG 194 (492)
T ss_pred cccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhh
Confidence 4445566655444444544432222334567788899999999999888887754455555555555455443
No 142
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.18 E-value=1.9e+02 Score=21.02 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhh-cCCCCcEEEEEcCCCHHHHHHHHHH
Q 045879 34 TRHELIKFYNEH-YSSNLMHLVVYSKESVDKIQGLVEN 70 (96)
Q Consensus 34 ~~~~l~~f~~~~-Y~~~~~~l~v~G~~~~~~l~~~v~~ 70 (96)
+.++|++--+.- -.-.+..+.++|+++++.+.++++.
T Consensus 212 ~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~~ 249 (273)
T PRK05848 212 SVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAKS 249 (273)
T ss_pred CHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHHc
Confidence 556666655420 0114788999999999988887653
No 143
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=26.15 E-value=1.9e+02 Score=20.00 Aligned_cols=38 Identities=5% Similarity=-0.035 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHh
Q 045879 35 RHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKF 72 (96)
Q Consensus 35 ~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f 72 (96)
.+.+++--.....|.++.|.++|.++.+++.+.++...
T Consensus 178 ~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~ 215 (236)
T PF01791_consen 178 VELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDAL 215 (236)
T ss_dssp HHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHH
T ss_pred HHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHH
Confidence 44466666777889999999999998777776665544
No 144
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=25.85 E-value=1.5e+02 Score=18.84 Aligned_cols=39 Identities=13% Similarity=0.251 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHh
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKF 72 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f 72 (96)
+.+++.+.+++.+.-+++-|++.-..-.+.+...|+++=
T Consensus 44 ~~eei~~~~~~~l~~~digIIlIte~~a~~i~~~I~~~~ 82 (115)
T TIGR01101 44 TVSEIEDCFNRFLKRDDIAIILINQHIAEMIRHAVDAHT 82 (115)
T ss_pred CHHHHHHHHHHHhhcCCeEEEEEcHHHHHHhHHHHHhcC
Confidence 468999999998888899999888877777777777744
No 145
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=25.80 E-value=69 Score=21.70 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=17.3
Q ss_pred CCcEEEEEcC-CCHHHHHHHHHHHhh
Q 045879 49 NLMHLVVYSK-ESVDKIQGLVENKFQ 73 (96)
Q Consensus 49 ~~~~l~v~G~-~~~~~l~~~v~~~f~ 73 (96)
++|++++.|+ ...+|+.+.+.+.-.
T Consensus 46 SRiTivv~g~~~~~EQi~kQL~kLid 71 (163)
T COG0440 46 SRITIVVSGDEQVLEQIIKQLNKLID 71 (163)
T ss_pred eEEEEEEcCCcchHHHHHHHHHhhcc
Confidence 4788999995 446677776666554
No 146
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=25.35 E-value=1.9e+02 Score=21.56 Aligned_cols=35 Identities=6% Similarity=0.031 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHH
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVEN 70 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~ 70 (96)
+.++|++... ...++..+-++|+++++.+.+++..
T Consensus 248 ~~e~l~~av~--~~~~~~~lEaSGGIt~~ni~~yA~t 282 (308)
T PLN02716 248 DVSMLKEAVE--LINGRFETEASGNVTLDTVHKIGQT 282 (308)
T ss_pred CHHHHHHHHH--hhCCCceEEEECCCCHHHHHHHHHc
Confidence 6788888775 3456778999999999999888754
No 147
>PRK08233 hypothetical protein; Provisional
Probab=25.28 E-value=1.9e+02 Score=18.43 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=20.4
Q ss_pred CCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 49 NLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 49 ~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
..+.++|-|+.+.+++.+.+.+.+.
T Consensus 152 ~~~~~vId~~~~~e~i~~~i~~~l~ 176 (182)
T PRK08233 152 PNADIVLDGALSVEEIINQIEEELY 176 (182)
T ss_pred cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 3567888899999998888888775
No 148
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=25.12 E-value=97 Score=20.58 Aligned_cols=28 Identities=4% Similarity=0.081 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCHHHHHHHHHHHhhcccC
Q 045879 50 LMHLVVYSKESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 50 ~~~l~v~G~~~~~~l~~~v~~~f~~~~~ 77 (96)
++.|+++|+.....+.+.+++|...++.
T Consensus 2 ki~I~~vGk~k~~~~~~~i~~Y~kRl~~ 29 (157)
T PRK00103 2 KITIIAVGKLKPKWLKDGIAEYLKRFPR 29 (157)
T ss_pred eEEEEEEeccCcHHHHHHHHHHHHhcCc
Confidence 4678889987766677888888877654
No 149
>cd07055 BMC_like_2 Bacterial Micro-Compartment (BMC)-like domain 2. BMC like 2 domains exist in cyanobacteria, proteobacteria, and actinobacteria and are homologs of carboxysome shell proteins. They might be encoded from putative organelles involved in unknown metabolic process. Although it has been suggested that these carboxysome shell protein homologs form hexamers and further assemble into the flat facets of the polyhedral bacterial organelles shell at present no experimental evidence exists to directly support this view.
Probab=25.07 E-value=96 Score=17.57 Aligned_cols=21 Identities=10% Similarity=0.234 Sum_probs=13.7
Q ss_pred CCCCcEEE-EEcCCCHHHHHHHHH
Q 045879 47 SSNLMHLV-VYSKESVDKIQGLVE 69 (96)
Q Consensus 47 ~~~~~~l~-v~G~~~~~~l~~~v~ 69 (96)
+|.+|..+ +.|+++ +++..++
T Consensus 34 CPq~~~~l~i~Gdvs--~Ve~Al~ 55 (61)
T cd07055 34 CPQHMITLAIFGETS--AVELAMR 55 (61)
T ss_pred CCCceEEEEEEecHH--HHHHHHH
Confidence 57777655 999876 4544443
No 150
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=25.02 E-value=86 Score=16.02 Aligned_cols=20 Identities=10% Similarity=0.049 Sum_probs=15.3
Q ss_pred cCCCHHHHHHHHHHHhhccc
Q 045879 57 SKESVDKIQGLVENKFQDIR 76 (96)
Q Consensus 57 G~~~~~~l~~~v~~~f~~~~ 76 (96)
+.++.+++.+.|..+|++-+
T Consensus 17 ~~~~~~~v~~~v~~Ll~~hp 36 (47)
T PF02671_consen 17 GRISRSEVIEEVSELLRGHP 36 (47)
T ss_dssp TCSCHHHHHHHHHHHTTT-H
T ss_pred cCCCHHHHHHHHHHHHccCH
Confidence 56788889999998887643
No 151
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=24.93 E-value=48 Score=21.05 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEcCCCHH
Q 045879 35 RHELIKFYNEHYSSNLMHLVVYSKESVD 62 (96)
Q Consensus 35 ~~~l~~f~~~~Y~~~~~~l~v~G~~~~~ 62 (96)
-+-|++|-+ -+|.++|+|+++.-
T Consensus 59 GeiLQKf~N-----Y~iklAivGD~s~~ 81 (113)
T PF13788_consen 59 GEILQKFVN-----YRIKLAIVGDFSAY 81 (113)
T ss_pred HHHHHHHHh-----hceeEEEEEccccc
Confidence 444555542 38999999999844
No 152
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=24.89 E-value=1.3e+02 Score=18.14 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=30.1
Q ss_pred HhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCC
Q 045879 43 NEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNT 78 (96)
Q Consensus 43 ~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~ 78 (96)
+-+|..+-|+..+-...+.+++.+.++..|+-.+.+
T Consensus 4 K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q 39 (83)
T cd06404 4 KAAYNGDIMITSIDPSISLEELCNEVRDMCRFHNDQ 39 (83)
T ss_pred EEEecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCC
Confidence 347888999999999999999999999999765443
No 153
>PRK14526 adenylate kinase; Provisional
Probab=24.84 E-value=1.1e+02 Score=21.05 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=24.8
Q ss_pred hhcCCCCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 44 EHYSSNLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 44 ~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
.||...+..+.|-|+-+.+++.+.+.+.+.
T Consensus 179 ~~y~~~~~~~~id~~~~~~~V~~~i~~~l~ 208 (211)
T PRK14526 179 EFYSKCNRLNNIDASKDIDEVKKKLIEIIS 208 (211)
T ss_pred HHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence 356667789999999999999988887765
No 154
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.84 E-value=1.5e+02 Score=19.29 Aligned_cols=29 Identities=21% Similarity=0.131 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCHHHHHHHHHHHhhcccCC
Q 045879 50 LMHLVVYSKESVDKIQGLVENKFQDIRNT 78 (96)
Q Consensus 50 ~~~l~v~G~~~~~~l~~~v~~~f~~~~~~ 78 (96)
|=.++|+|.++.+++.++...-|..+-+.
T Consensus 7 ~d~lsVsgQi~~~D~~~iaa~GFksiI~n 35 (130)
T COG3453 7 NDRLSVSGQISPADIASIAALGFKSIICN 35 (130)
T ss_pred ccceeecCCCCHHHHHHHHHhccceeccc
Confidence 44689999999999999999999887654
No 155
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=24.67 E-value=1.9e+02 Score=22.46 Aligned_cols=45 Identities=7% Similarity=0.053 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCC
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNT 78 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~ 78 (96)
..+.+....+.-|+|.|.-++.+..-..++....+++.+.-.++.
T Consensus 114 d~~~verll~aiYhPqN~ycihvD~~s~~~fk~~~~~L~~cf~NV 158 (439)
T KOG0799|consen 114 DYEQVERLLQAIYHPQNVYCIHVDAKSPPEFRVAMQQLASCFPNV 158 (439)
T ss_pred cHHHHHHHHHHHhCCcCcceEEECCCCCHHHHHHHHHHHhcCCce
Confidence 467788889999999999999999988787777777777766663
No 156
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=24.53 E-value=1.4e+02 Score=21.30 Aligned_cols=27 Identities=4% Similarity=0.258 Sum_probs=21.5
Q ss_pred HhhcCCCCcEEEEEcCCCHHHHHHHHH
Q 045879 43 NEHYSSNLMHLVVYSKESVDKIQGLVE 69 (96)
Q Consensus 43 ~~~Y~~~~~~l~v~G~~~~~~l~~~v~ 69 (96)
..+..++.++++|+..++++++++++.
T Consensus 84 ~~~~~~~~lvISi~AGi~i~~l~~~l~ 110 (272)
T PRK12491 84 KDQIKNDVIVVTIAAGKSIKSTENEFD 110 (272)
T ss_pred HHhhcCCcEEEEeCCCCcHHHHHHhcC
Confidence 344567789999999999999888763
No 157
>PLN00078 photosystem I reaction center subunit N (PsaN); Provisional
Probab=24.37 E-value=55 Score=20.75 Aligned_cols=15 Identities=20% Similarity=0.658 Sum_probs=12.7
Q ss_pred chHHHHHHHHHhhcC
Q 045879 33 DTRHELIKFYNEHYS 47 (96)
Q Consensus 33 ~~~~~l~~f~~~~Y~ 47 (96)
+..+.|-+||+|+|.
T Consensus 75 ndkERLDdYYKRNyk 89 (122)
T PLN00078 75 NDKERLDDYYKRNYK 89 (122)
T ss_pred hHHHHHHHHHHHhHH
Confidence 468889999999885
No 158
>PRK02951 DNA replication terminus site-binding protein; Provisional
Probab=24.35 E-value=75 Score=23.72 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=39.2
Q ss_pred CCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcc
Q 045879 14 KFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDI 75 (96)
Q Consensus 14 ~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~ 75 (96)
+|+|.+...|+.+ +++++.+=.++-+..++.+ ..++-++....+++...++
T Consensus 169 rF~WanK~~Ik~~-------tree~L~~L~ksl~~~r~~----~p~~~eqw~~~l~~e~~~I 219 (309)
T PRK02951 169 RFGWANKHIIKNL-------TRDELLAQLEKSLKSGRAV----APWTREQWQEKLEQEIQDI 219 (309)
T ss_pred EEEeccCchhccc-------CHHHHHHHHHHHHhcCCCC----CCcCHHHHHHHHHHHHHHH
Confidence 7899999999998 9999999999999887743 3556666666666555544
No 159
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.24 E-value=2.2e+02 Score=20.17 Aligned_cols=45 Identities=9% Similarity=-0.049 Sum_probs=25.1
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCC-HHHHHHHHHHHhhcccCC
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKES-VDKIQGLVENKFQDIRNT 78 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~-~~~l~~~v~~~f~~~~~~ 78 (96)
.++.+.+--+.--..+.|+|.|+-+.+ .+++.+.+++.......+
T Consensus 96 l~~~i~~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~~~~v~~g 141 (229)
T PRK10240 96 LQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEQVQQG 141 (229)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEeccCCHHHHHHHHHHHHHHHHcC
Confidence 455555555555555667777766654 345666666555443333
No 160
>COG3443 Predicted periplasmic or secreted protein [General function prediction only]
Probab=24.19 E-value=1e+02 Score=21.23 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=25.3
Q ss_pred CcchHHHHHHHHHhhcCCCCcEEEEEcC
Q 045879 31 GLDTRHELIKFYNEHYSSNLMHLVVYSK 58 (96)
Q Consensus 31 ~~~~~~~l~~f~~~~Y~~~~~~l~v~G~ 58 (96)
|-.+.++.++||++-|..+--.|.|.|+
T Consensus 63 ~~ktaaeyk~YY~kGY~Tdv~~I~I~~~ 90 (193)
T COG3443 63 GKKTAAEYKAYYRKGYKTDVERIGIDGD 90 (193)
T ss_pred ccccHHHHHHHHhcccccceeEEEEcCC
Confidence 4458999999999999999999999887
No 161
>PRK00698 tmk thymidylate kinase; Validated
Probab=24.17 E-value=2.1e+02 Score=18.63 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhcCCC-CcEEEEEcCCCHHHHHHHHHHHhhc
Q 045879 35 RHELIKFYNEHYSSN-LMHLVVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 35 ~~~l~~f~~~~Y~~~-~~~l~v~G~~~~~~l~~~v~~~f~~ 74 (96)
.+.+.+.|+...... ...++|-++-+.+++.+.|.+....
T Consensus 162 ~~~~~~~y~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~i~~ 202 (205)
T PRK00698 162 FERVREGYLELAEKEPERIVVIDASQSLEEVHEDILAVIKA 202 (205)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 345555666554222 3467788888888888888777654
No 162
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=23.95 E-value=1.8e+02 Score=20.10 Aligned_cols=35 Identities=11% Similarity=0.282 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHH
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVE 69 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~ 69 (96)
+-+++++.-+ .|.-.|+.+.+.++++.|++++.+.
T Consensus 137 ~~~~v~~~l~-~~~i~~~~v~~~~~~~~~~~~~~~~ 171 (233)
T cd01896 137 DEKTIKAILR-EYKIHNADVLIREDITVDDLIDVIE 171 (233)
T ss_pred CHHHHHHHHH-HhCeeeEEEEEccCCCHHHHHHHHh
Confidence 5677888775 6888899999999999999998875
No 163
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=23.86 E-value=1e+02 Score=23.13 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHh
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKF 72 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f 72 (96)
.++.+++|-+.+=.-.+++|..+... .+++.+|+++.+
T Consensus 191 aq~~ir~Flke~n~~~~aTVllTTH~-~~di~~lc~rv~ 228 (325)
T COG4586 191 AQANIREFLKEYNEERQATVLLTTHI-FDDIATLCDRVL 228 (325)
T ss_pred HHHHHHHHHHHHHHhhCceEEEEecc-hhhHHHhhhheE
Confidence 79999999998888888888887654 467888877654
No 164
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=23.58 E-value=1.8e+02 Score=17.50 Aligned_cols=40 Identities=10% Similarity=0.104 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
.+++|+..+.+-=.|=.+.+...++-.-+++++++++.-+
T Consensus 6 ~~~qL~~~f~~l~~pV~l~~f~~~~~~~~e~~~ll~e~a~ 45 (94)
T cd02974 6 LKQQLKAYLERLENPVELVASLDDSEKSAELLELLEEIAS 45 (94)
T ss_pred HHHHHHHHHHhCCCCEEEEEEeCCCcchHHHHHHHHHHHH
Confidence 7899999998744443444444444444667777765543
No 165
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=23.45 E-value=1.2e+02 Score=20.45 Aligned_cols=28 Identities=7% Similarity=0.152 Sum_probs=22.6
Q ss_pred hcCCCCcEEEEEcCCCHHHHHHHHHHHh
Q 045879 45 HYSSNLMHLVVYSKESVDKIQGLVENKF 72 (96)
Q Consensus 45 ~Y~~~~~~l~v~G~~~~~~l~~~v~~~f 72 (96)
||....+.+.|-|+-+.+++.+.|.+.+
T Consensus 182 ~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 182 YYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred HHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 4555568999999999999998887654
No 166
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=23.42 E-value=1.3e+02 Score=18.19 Aligned_cols=29 Identities=7% Similarity=-0.080 Sum_probs=21.6
Q ss_pred cCCC--CcEEEEEcCCCHHHHHHHHHHHhhc
Q 045879 46 YSSN--LMHLVVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 46 Y~~~--~~~l~v~G~~~~~~l~~~v~~~f~~ 74 (96)
+.++ +.+..++|-.+.+++.++++...+.
T Consensus 91 ~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 91 LDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred EcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 3444 6677788888888999998887653
No 167
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=23.30 E-value=1.2e+02 Score=21.46 Aligned_cols=32 Identities=9% Similarity=0.193 Sum_probs=23.1
Q ss_pred HHHHHHHhhcCCCCcEEEEEcC-----CCHHHHHHHH
Q 045879 37 ELIKFYNEHYSSNLMHLVVYSK-----ESVDKIQGLV 68 (96)
Q Consensus 37 ~l~~f~~~~Y~~~~~~l~v~G~-----~~~~~l~~~v 68 (96)
.|++++..-..++|+-|.|++. ++.+++.+.+
T Consensus 194 tlkE~fege~~~~nieigv~~~~~F~~lt~~eI~d~l 230 (233)
T KOG0181|consen 194 TLKESFEGEMTAKNIEIGVCGENGFRRLTPAEIEDYL 230 (233)
T ss_pred HHHHHhccccccCceEEEEecCCceeecCHHHHHHHH
Confidence 4778888888888888888874 4555555444
No 168
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=23.30 E-value=1.5e+02 Score=16.71 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=25.1
Q ss_pred cchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhc
Q 045879 32 LDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 32 ~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~ 74 (96)
..+.+++++|.+..=.-.++ +.+++.+++.++-..
T Consensus 15 ~mt~~~f~~FL~~eQ~~~~~--------~~~~~~~li~~~~~~ 49 (83)
T PF09279_consen 15 YMTAEEFRRFLREEQGEPRL--------TDEQAKELIEKFEPD 49 (83)
T ss_dssp SEEHHHHHHHHHHTSS-TTS--------SHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccccC--------cHHHHHHHHHHHccc
Confidence 34899999999765444344 788999998887543
No 169
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.24 E-value=2.4e+02 Score=20.54 Aligned_cols=35 Identities=6% Similarity=0.034 Sum_probs=24.1
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHH
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVEN 70 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~ 70 (96)
+.+++++.-+. .+.++.+.++|.++.+.+.+++..
T Consensus 219 ~~e~l~~~v~~--~~~~i~leAsGGIt~~ni~~~a~t 253 (277)
T PRK05742 219 SLDDMREAVRL--TAGRAKLEASGGINESTLRVIAET 253 (277)
T ss_pred CHHHHHHHHHH--hCCCCcEEEECCCCHHHHHHHHHc
Confidence 45566655542 235788999999998888877653
No 170
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.23 E-value=2e+02 Score=20.53 Aligned_cols=45 Identities=16% Similarity=0.102 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCC-HHHHHHHHHHHhhcccCC
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKES-VDKIQGLVENKFQDIRNT 78 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~-~~~l~~~v~~~f~~~~~~ 78 (96)
.++.+.+--+.--..+.|+|.|+-+.+ .+++.+.++++......+
T Consensus 117 ~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~~~~~~g 162 (243)
T PRK14829 117 VIDELEAAEELTKNNTTMDLVFCVNYGGRAEIADAAAAIAREVRDG 162 (243)
T ss_pred HHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHHHcC
Confidence 455666555555666778887777765 456666666665544333
No 171
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways. They are large proteins characterised by N-terminal RNA-binding motifs and a highly conserved C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. The function of the SPOC domain is unknown, but the SPOC domain of the SHARP Spen protein has been implicated in the interaction of SHARP with the SMRT/NcoR corepressor, where SHARP plays an essential role in the repressor complex []. The SPOC domain is folded into a single compact domain consisting of a beta-barrel with seven strands framed by six alpha helices. A number of deep grooves and clefts in the surface, plus two nonpolar loops, render the SPOC domain well suited to protein-protein interactions; most of the conserved residues occur on the protein surface rather than in the core. Other proteins containing a SPOC domain include drosophila Split ends, which promotes sclerite development in the head and restricts it in the thorax, and mouse MINT (homologue of SHARP), which is involved in skeletal and neuronal development via its repression of Msx2.; PDB: 1OW1_A.
Probab=23.22 E-value=83 Score=19.01 Aligned_cols=25 Identities=4% Similarity=0.022 Sum_probs=14.9
Q ss_pred CCCCcEEEEEcCCCHHHHHHHHHHH
Q 045879 47 SSNLMHLVVYSKESVDKIQGLVENK 71 (96)
Q Consensus 47 ~~~~~~l~v~G~~~~~~l~~~v~~~ 71 (96)
.---..|.|.|.++.+.+.+.+.+.
T Consensus 35 ~~~p~~i~i~gRl~~~~~~~yl~~i 59 (119)
T PF07744_consen 35 QLPPKKIDIRGRLDPEKVWDYLRQI 59 (119)
T ss_dssp ----EEE-EEEE-SHHHHHHHHHHT
T ss_pred cCCCcEEEEEeecCHHHHHHHHHhc
Confidence 3445788899999988877776543
No 172
>PLN02200 adenylate kinase family protein
Probab=23.18 E-value=2.2e+02 Score=19.85 Aligned_cols=31 Identities=23% Similarity=0.188 Sum_probs=25.4
Q ss_pred hcCCCCcEEEEEcCCCHHHHHHHHHHHhhcc
Q 045879 45 HYSSNLMHLVVYSKESVDKIQGLVENKFQDI 75 (96)
Q Consensus 45 ~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~ 75 (96)
+|......+.|-|+-+.+++.+.|.+.+...
T Consensus 195 ~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~~ 225 (234)
T PLN02200 195 YYSKKGKLYTINAVGTVDEIFEQVRPIFAAC 225 (234)
T ss_pred HHHhcCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence 5655667889999999999999998887654
No 173
>smart00040 CSF2 Granulocyte-macrophage colony-simulating factor (GM-CSF). GM-CSF stimulates the development of and the cytotoxic activity of white blood cells.
Probab=23.17 E-value=2e+02 Score=18.35 Aligned_cols=54 Identities=11% Similarity=0.069 Sum_probs=38.9
Q ss_pred CCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhccc
Q 045879 15 FSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIR 76 (96)
Q Consensus 15 ~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~ 76 (96)
-.-||...|+. ....|-.+|++|--|--=+=|-.--++.+...+-+..++-+||
T Consensus 65 GLrGslt~Lkg--------~LtmmA~hYkq~CppTpEt~C~Tq~itfksFk~nLK~FLf~Ip 118 (121)
T smart00040 65 GLRGSLTKLKG--------PLTMMASHYKQHCPPTPETSCETQIITFKSFKENLKDFLFDIP 118 (121)
T ss_pred hccccHHHhhc--------HHHHHHHHHHhcCCCCCCCcccceeeeHHHHHHHHHHHHhcCC
Confidence 34567666666 5778889998877776666666666778888888877776665
No 174
>COG3272 Uncharacterized conserved protein [Function unknown]
Probab=23.13 E-value=63 Score=21.82 Aligned_cols=12 Identities=33% Similarity=0.478 Sum_probs=10.8
Q ss_pred hHHHHHHHHHhh
Q 045879 34 TRHELIKFYNEH 45 (96)
Q Consensus 34 ~~~~l~~f~~~~ 45 (96)
++.+|.+||.+|
T Consensus 24 s~~~LidFHsry 35 (163)
T COG3272 24 SRGALIDFHSRY 35 (163)
T ss_pred cHHHHHHHHHHh
Confidence 799999999885
No 175
>PRK00876 nadE NAD synthetase; Reviewed
Probab=23.00 E-value=1.8e+02 Score=21.72 Aligned_cols=40 Identities=8% Similarity=-0.050 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
..+-|+++.+++...+.+++.++|.+|-.-+..++.+.++
T Consensus 19 i~~~l~~~V~~~~~~~~VvVgLSGGIDSSvvaaLa~~a~g 58 (326)
T PRK00876 19 IRAAIREQVRGTLRRRGVVLGLSGGIDSSVTAALCVRALG 58 (326)
T ss_pred HHHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHHHHhhC
Confidence 4666777777777788999999999996666666656565
No 176
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=22.66 E-value=1.1e+02 Score=18.45 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=18.6
Q ss_pred EEEcCCCHHHHHHHHHHHhhc
Q 045879 54 VVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 54 ~v~G~~~~~~l~~~v~~~f~~ 74 (96)
++.|+++.+++.+++++++.+
T Consensus 60 v~Y~~V~~edv~~Iv~~~~~~ 80 (92)
T cd03063 60 VAYGPVTPADVASLLDAGALE 80 (92)
T ss_pred EEEEeCCHHHHHHHHHHHhhc
Confidence 567999999999999999874
No 177
>PRK12482 flagellar motor protein MotA; Provisional
Probab=22.45 E-value=30 Score=25.40 Aligned_cols=34 Identities=12% Similarity=0.436 Sum_probs=28.2
Q ss_pred HHHHhh-----------cCCCCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 40 KFYNEH-----------YSSNLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 40 ~f~~~~-----------Y~~~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
.|+++| +.-+.+.++|-|+.|.+++++.++.-..
T Consensus 108 p~f~~~p~~~~~~~~l~fi~Dglrl~vdg~~d~~~i~~iLe~eie 152 (287)
T PRK12482 108 SLFQKYPLILQQKRLITFISDNFRLMAMGKINQHELEGILDQELD 152 (287)
T ss_pred HHHHhCchhhcchHHHHHHHhchHHHhcCCCCHHHHHHHHHHHHH
Confidence 388877 8888999999999999999998865544
No 178
>PF12674 Zn_ribbon_2: Putative zinc ribbon domain
Probab=22.13 E-value=1.6e+02 Score=17.37 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=26.4
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhccc
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIR 76 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~ 76 (96)
+.++++++-..+-...+. ++.+++...+.++|..++
T Consensus 43 t~eemie~~~~~~~~~~~-------~~~~~a~~~~~~~lp~Lk 78 (81)
T PF12674_consen 43 TMEEMIEFCVPFMDEFNG-------MTPEEARKMMPRYLPTLK 78 (81)
T ss_pred CHHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHccCCc
Confidence 778888887776665544 788888888888876554
No 179
>PF09873 DUF2100: Uncharacterized protein conserved in archaea (DUF2100); InterPro: IPR019210 This entry represents various hypothetical archaeal proteins, and has no known function.
Probab=21.69 E-value=2.6e+02 Score=19.78 Aligned_cols=39 Identities=8% Similarity=0.192 Sum_probs=28.4
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEE-cCCCHHHHHHHHHHHhh
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVY-SKESVDKIQGLVENKFQ 73 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~-G~~~~~~l~~~v~~~f~ 73 (96)
++.++..+.. .|.|.+++|||- ||-.=+=+...++++++
T Consensus 166 ~K~~Ier~I~-k~~p~kivVVVee~Dk~~eLl~~RAkeLYn 205 (215)
T PF09873_consen 166 AKNNIERKIE-KFKPSKIVVVVEEGDKSDELLYKRAKELYN 205 (215)
T ss_pred HHHHHHHHHH-hcCccceEEEEeccccccHHHHHHHHHHcC
Confidence 5777777775 699999999998 66663445555676665
No 180
>smart00860 SMI1_KNR4 SMI1 / KNR4 family. Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.
Probab=21.49 E-value=39 Score=19.46 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=16.7
Q ss_pred hhccccccCCcchHHHHHHHHHhhc
Q 045879 22 TLEVRPKAKGLDTRHELIKFYNEHY 46 (96)
Q Consensus 22 tl~~~~~~~~~~~~~~l~~f~~~~Y 46 (96)
.|.++...-|+...+++++||+.+=
T Consensus 6 ~i~~~e~~lg~~LP~~y~~f~~~~~ 30 (129)
T smart00860 6 EIAELEKKLGIKLPEDYKEFLLLHN 30 (129)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHcC
Confidence 3444433456668999999998653
No 181
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=21.48 E-value=1.2e+02 Score=22.09 Aligned_cols=24 Identities=17% Similarity=-0.083 Sum_probs=19.4
Q ss_pred CCcEEEEEcCC---CHHHHHHHHHHHh
Q 045879 49 NLMHLVVYSKE---SVDKIQGLVENKF 72 (96)
Q Consensus 49 ~~~~l~v~G~~---~~~~l~~~v~~~f 72 (96)
.++++|++|.+ +.++++++|+++=
T Consensus 222 ~g~~~vfTG~l~~~~R~~~~~~~~~~G 248 (309)
T PRK06195 222 KEEVVVFTGGLASMTRDEAMILVRRLG 248 (309)
T ss_pred cCCEEEEccccCCCCHHHHHHHHHHhC
Confidence 47899999998 6788998887643
No 182
>PF04237 YjbR: YjbR; InterPro: IPR007351 This is a family of uncharacterised proteins.; PDB: 3H9X_D 2KFP_A 2FKI_A 2A1V_A.
Probab=21.39 E-value=1.6e+02 Score=17.07 Aligned_cols=23 Identities=9% Similarity=0.258 Sum_probs=16.2
Q ss_pred cEEEEE-cCCCHHHHHHHHHHHhh
Q 045879 51 MHLVVY-SKESVDKIQGLVENKFQ 73 (96)
Q Consensus 51 ~~l~v~-G~~~~~~l~~~v~~~f~ 73 (96)
-+.+.- |.++.+++.++|.+.+.
T Consensus 67 Wv~v~l~~~v~~~~l~~li~~Sy~ 90 (92)
T PF04237_consen 67 WVSVRLDGDVDDEELRELIDESYR 90 (92)
T ss_dssp EEEEETTSSS-HHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHh
Confidence 344444 68999999999987653
No 183
>COG3870 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.34 E-value=1.4e+02 Score=18.80 Aligned_cols=20 Identities=0% Similarity=0.250 Sum_probs=14.8
Q ss_pred CcEEEEEcCCCHHHHHHHHH
Q 045879 50 LMHLVVYSKESVDKIQGLVE 69 (96)
Q Consensus 50 ~~~l~v~G~~~~~~l~~~v~ 69 (96)
.++|+|+-|.+-+++++.+.
T Consensus 2 KLiiaivqd~da~~l~~~L~ 21 (109)
T COG3870 2 KLIIAIVQDQDANELEDALT 21 (109)
T ss_pred eeEEEEEecccHHHHHHHHH
Confidence 36788888888888777654
No 184
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=21.03 E-value=1.2e+02 Score=17.89 Aligned_cols=29 Identities=7% Similarity=0.257 Sum_probs=24.0
Q ss_pred hcCCCCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 45 HYSSNLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 45 ~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
.|..+.+.+.+.-+...++|.+.|.+.|+
T Consensus 6 ~~~~d~~r~~l~~~~~~~~L~~~i~~r~~ 34 (82)
T cd06407 6 TYGEEKIRFRLPPSWGFTELKQEIAKRFK 34 (82)
T ss_pred EeCCeEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 56777788888888888899888888886
No 185
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=20.97 E-value=2e+02 Score=20.00 Aligned_cols=24 Identities=8% Similarity=0.230 Sum_probs=20.3
Q ss_pred cCCCCcEEEEEcCCCHHHHHHHHH
Q 045879 46 YSSNLMHLVVYSKESVDKIQGLVE 69 (96)
Q Consensus 46 Y~~~~~~l~v~G~~~~~~l~~~v~ 69 (96)
..++.++|++++.++.+++++++.
T Consensus 67 ~~~~~~ivS~~agi~~~~l~~~~~ 90 (245)
T TIGR00112 67 KGKDKLLISIAAGVTLEKLSQLLG 90 (245)
T ss_pred ccCCCEEEEecCCCCHHHHHHHcC
Confidence 467889999999999999887763
No 186
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=20.85 E-value=1.3e+02 Score=17.35 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=20.3
Q ss_pred hcCCCCcEEEEEcCC-CHHHHHHHHHHHh
Q 045879 45 HYSSNLMHLVVYSKE-SVDKIQGLVENKF 72 (96)
Q Consensus 45 ~Y~~~~~~l~v~G~~-~~~~l~~~v~~~f 72 (96)
--.+|-+++++.|+. ..+.+...+++.|
T Consensus 36 ~~nANtit~yl~~~~k~~~r~~~~Le~~~ 64 (71)
T cd04910 36 DTNANTITHYLAGSLKTIKRLTEDLENRF 64 (71)
T ss_pred ecCCCeEEEEEEcCHHHHHHHHHHHHHhC
Confidence 346889999999996 4566666666655
No 187
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=20.84 E-value=40 Score=17.74 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=21.2
Q ss_pred hHHHHHHHHHh-hcCCCCcEEEEE-cCCCHHHHHHHH
Q 045879 34 TRHELIKFYNE-HYSSNLMHLVVY-SKESVDKIQGLV 68 (96)
Q Consensus 34 ~~~~l~~f~~~-~Y~~~~~~l~v~-G~~~~~~l~~~v 68 (96)
+.++++.||.- .|++..+...|. |.++.+|-+++.
T Consensus 5 ~~e~iK~~Y~~g~~t~e~v~~~V~~~~IT~eey~eIT 41 (45)
T TIGR01669 5 SFEKVKTYYLWGYYSNEDVNKFVEKKLITREQYKVIT 41 (45)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHhhcCccCHHHHHHHh
Confidence 56777777764 345555555444 677777766553
No 188
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=20.81 E-value=1.8e+02 Score=16.57 Aligned_cols=11 Identities=27% Similarity=0.154 Sum_probs=5.2
Q ss_pred HHHHHHHHHhh
Q 045879 35 RHELIKFYNEH 45 (96)
Q Consensus 35 ~~~l~~f~~~~ 45 (96)
.+.|-..+.++
T Consensus 21 ~~~Ld~~~~~~ 31 (71)
T PF10686_consen 21 WAALDKVHARH 31 (71)
T ss_pred HHHHHHHHHhC
Confidence 44444455444
No 189
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=20.75 E-value=2.6e+02 Score=20.48 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHH
Q 045879 35 RHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENK 71 (96)
Q Consensus 35 ~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~ 71 (96)
.+++++..+.. .-++..|.++|+++++.+.++.+.-
T Consensus 231 ~~~~~~~l~~~-g~~~~~ieaSGgI~~~~i~~~a~~g 266 (302)
T cd01571 231 IREVRWALDIR-GYKHVKIFVSGGLDEEDIKELEDVG 266 (302)
T ss_pred HHHHHHHHHhC-CCCCeEEEEeCCCCHHHHHHHHHcC
Confidence 44555555543 1146899999999999998887653
No 190
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=20.69 E-value=1.5e+02 Score=15.62 Aligned_cols=39 Identities=10% Similarity=0.209 Sum_probs=28.6
Q ss_pred cCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccC
Q 045879 29 AKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 29 ~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~ 77 (96)
.+|.++.++++.+.+....+.. .+++.+.+...|..+-.
T Consensus 13 ~~G~i~~~el~~~~~~~~~~~~----------~~~~~~~~~~~~~~~D~ 51 (66)
T PF13499_consen 13 GDGYISKEELRRALKHLGRDMS----------DEESDEMIDQIFREFDT 51 (66)
T ss_dssp SSSEEEHHHHHHHHHHTTSHST----------HHHHHHHHHHHHHHHTT
T ss_pred ccCCCCHHHHHHHHHHhccccc----------HHHHHHHHHHHHHHhCC
Confidence 4677799999999988765543 56777788888876543
No 191
>COG0221 Ppa Inorganic pyrophosphatase [Energy production and conversion]
Probab=20.67 E-value=2.9e+02 Score=18.79 Aligned_cols=43 Identities=9% Similarity=0.137 Sum_probs=32.7
Q ss_pred hHHHHHHHHHhhcCCCC-cEEEEEcCCCHHHHHHHHHHHhhccc
Q 045879 34 TRHELIKFYNEHYSSNL-MHLVVYSKESVDKIQGLVENKFQDIR 76 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~-~~l~v~G~~~~~~l~~~v~~~f~~~~ 76 (96)
..+++..||..|=.-.. -.+-+.|=.+.+++.+.+++....++
T Consensus 127 ~~~~i~~ffe~yK~le~~k~~~~~gw~~~~~A~~~i~~~~~~~k 170 (171)
T COG0221 127 LLDEIQHFFETYKDLEKGKWVKVEGWEDAEEAKKEIKEAIERYK 170 (171)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEeccccCHHHHHHHHHHHHHHhh
Confidence 67888888876655555 37778888899999999887766543
No 192
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=20.57 E-value=1.4e+02 Score=15.14 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=18.0
Q ss_pred CcEEEEEcCC---CHHHHHHHHHHHhhcccC
Q 045879 50 LMHLVVYSKE---SVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 50 ~~~l~v~G~~---~~~~l~~~v~~~f~~~~~ 77 (96)
++.+++.|.. +.+++.+++...=|.+..
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~ 31 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVTS 31 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCEEec
Confidence 4677888864 566777777666554443
No 193
>PF12213 Dpoe2NT: DNA polymerases epsilon N terminal; InterPro: IPR024639 This domain is found in the N-terminal of DNA polymerase epsilon subunit B proteins. It contains a single completely conserved phenylalanine residue that may be functionally important. It forms a primarily alpha helical structure in which four helices are arranged in two hairpins with connecting loops containing beta strands which form a short parallel sheet. DNA polymerase epsilon is required in DNA replication for synthesis of the leading strand. The N-terminal domain has close structural relation to AAA+ protein C-terminal domains [].; PDB: 2V6Z_M.
Probab=20.56 E-value=1.1e+02 Score=17.73 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=28.0
Q ss_pred CCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCCCCCCCC
Q 045879 30 KGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDRNLFRF 85 (96)
Q Consensus 30 ~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~ 85 (96)
.|+..+.|...|-.+...+ ++.++.++|+++....+...+.+.+.+
T Consensus 16 ~Gl~Lr~eA~~~l~~~l~~----------~~~~e~e~~l~~Ii~~v~kq~Lss~~v 61 (73)
T PF12213_consen 16 RGLSLRSEASKYLAEQLQS----------LSEEEREDWLDKIIDAVQKQPLSSSIV 61 (73)
T ss_dssp TT-EE-HHHHHHHHHHTTT----------S-TTTHHHHHHHHHHHHTTS--SSSEE
T ss_pred ccceecHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 3556778888888777644 445667778888877777766655443
No 194
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=20.56 E-value=1.8e+02 Score=18.32 Aligned_cols=54 Identities=22% Similarity=0.177 Sum_probs=30.3
Q ss_pred CCCCCCCCCCHh--hhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCC-HHHHHHHHHH
Q 045879 10 HPYHKFSTGNWE--TLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES-VDKIQGLVEN 70 (96)
Q Consensus 10 hp~~~~~~G~~~--tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~-~~~l~~~v~~ 70 (96)
||-.--++|+.| -+..+ ..++-++-+++.+..+-..|+++-+++ .+++.+.+++
T Consensus 47 ~~~RIQiiG~~E~~yl~~l-------~~~~r~~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~ 103 (127)
T PF02603_consen 47 HPNRIQIIGNTESAYLNSL-------DEEERKERLEKLFSYNPPCIIVTRGLEPPPELIELAEK 103 (127)
T ss_dssp TTCSEEEE-HHHHHHHCCS--------HHHHCCHHHHHCTTT-S-EEEETTT---HHHHHHHHH
T ss_pred CCCeEEEEcHHHHHHHHHC-------CHHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHH
Confidence 333334566553 45555 667777777777777777777777765 5566666654
No 195
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=20.56 E-value=2.5e+02 Score=20.60 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
..+.|+.|.+..+ +++|+.+|.+|---|..++.+..|
T Consensus 6 Kl~~l~~~ik~~~---kv~vAfSGGvDSslLa~la~~~lG 42 (269)
T COG1606 6 KLERLKKAIKEKK---KVVVAFSGGVDSSLLAKLAKEALG 42 (269)
T ss_pred HHHHHHHHHhhcC---eEEEEecCCccHHHHHHHHHHHhc
Confidence 5778999999888 899999999997666666667775
No 196
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=20.54 E-value=1.2e+02 Score=17.78 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=15.1
Q ss_pred CcEEEEEcCCCHHHHHHHHHHH
Q 045879 50 LMHLVVYSKESVDKIQGLVENK 71 (96)
Q Consensus 50 ~~~l~v~G~~~~~~l~~~v~~~ 71 (96)
-+.+.+.|.++.+++++++...
T Consensus 2 il~v~~~g~~t~ed~~~~~~~~ 23 (109)
T PF11964_consen 2 ILAVRVSGKLTEEDYKELLPAL 23 (109)
T ss_dssp -EEEEEEEEE-HHHHHHHHHHH
T ss_pred EEEEEEeeeeCHHHHHHHHHHH
Confidence 3567888999999888865443
No 197
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=20.14 E-value=1.6e+02 Score=18.96 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=21.9
Q ss_pred hcCCCCcEEEEEcCCCHHHHHHHHHHHh
Q 045879 45 HYSSNLMHLVVYSKESVDKIQGLVENKF 72 (96)
Q Consensus 45 ~Y~~~~~~l~v~G~~~~~~l~~~v~~~f 72 (96)
+|......++|-|+-+.+++.+.+.+.|
T Consensus 155 ~~~~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 155 HYENKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred HHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence 3554556888999999999988888765
Done!