Query 045879
Match_columns 96
No_of_seqs 160 out of 1043
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 10:58:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045879.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045879hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cww_A Insulysin, insulin-degr 99.8 1.2E-19 4E-24 144.3 6.9 89 3-91 177-265 (990)
2 1q2l_A Protease III; hydrolase 99.8 3E-19 1E-23 141.2 8.7 85 4-91 164-248 (939)
3 3ami_A Zinc peptidase; alpha/b 99.7 8.1E-18 2.8E-22 123.5 7.3 70 5-81 151-220 (445)
4 3eoq_A Putative zinc protease; 99.7 5.9E-18 2E-22 122.9 6.2 71 4-81 143-213 (406)
5 2fge_A Atprep2;, zinc metallop 99.7 6.7E-18 2.3E-22 134.6 4.9 66 4-76 195-260 (995)
6 3hdi_A Processing protease; CA 99.7 1.5E-16 5.1E-21 115.7 7.2 69 5-81 145-213 (421)
7 3s5m_A Falcilysin; M16 metallo 99.6 1.4E-16 4.9E-21 130.7 6.9 69 4-79 261-329 (1193)
8 1pp9_A Ubiquinol-cytochrome C 99.6 3E-16 1E-20 115.2 7.3 69 5-80 156-224 (446)
9 1hr6_B Beta-MPP, mitochondrial 99.6 8.4E-16 2.9E-20 112.2 7.3 69 5-80 150-218 (443)
10 1hr6_A Alpha-MPP, mitochondria 99.6 2.1E-15 7.2E-20 111.8 6.4 69 4-80 147-215 (475)
11 3gwb_A Peptidase M16 inactive 99.6 3.9E-15 1.3E-19 108.1 7.2 69 5-80 158-226 (434)
12 3cx5_A Cytochrome B-C1 complex 99.5 7.1E-15 2.4E-19 106.5 5.6 69 5-80 141-209 (431)
13 3amj_B Zinc peptidase inactive 99.5 1.5E-14 5.2E-19 104.8 6.4 68 5-81 153-220 (424)
14 3go9_A Insulinase family prote 99.5 6.2E-14 2.1E-18 105.2 9.4 65 6-79 176-240 (492)
15 3d3y_A Uncharacterized protein 99.5 2.4E-14 8.3E-19 103.3 5.5 67 5-80 161-228 (425)
16 3cx5_B Cytochrome B-C1 complex 99.5 6E-14 2E-18 99.8 5.8 64 6-80 134-198 (352)
17 1pp9_B Ubiquinol-cytochrome C 99.4 1.4E-13 4.7E-18 100.0 5.7 65 5-79 166-230 (439)
18 1q2l_A Protease III; hydrolase 98.3 4.6E-07 1.6E-11 71.7 4.8 58 14-78 647-704 (939)
19 2fge_A Atprep2;, zinc metallop 97.8 3.5E-05 1.2E-09 61.6 6.3 47 34-80 741-789 (995)
20 3cww_A Insulysin, insulin-degr 97.3 0.00011 3.6E-09 58.6 2.5 59 10-77 664-725 (990)
21 3gwb_A Peptidase M16 inactive 92.1 0.11 3.8E-06 37.0 3.2 33 21-60 390-422 (434)
22 3s5m_A Falcilysin; M16 metallo 91.8 0.08 2.7E-06 44.1 2.4 43 34-76 912-955 (1193)
23 3hdi_A Processing protease; CA 91.6 0.18 6.3E-06 35.9 3.9 32 21-60 374-405 (421)
24 3ih6_A Putative zinc protease; 91.0 0.2 6.7E-06 32.2 3.3 33 21-60 163-195 (197)
25 3amj_B Zinc peptidase inactive 90.4 0.21 7.1E-06 35.5 3.2 34 20-60 382-415 (424)
26 3cx5_A Cytochrome B-C1 complex 89.9 0.35 1.2E-05 34.2 4.0 33 21-60 382-414 (431)
27 1hr6_A Alpha-MPP, mitochondria 88.7 0.62 2.1E-05 33.9 4.7 26 34-59 403-437 (475)
28 1pp9_A Ubiquinol-cytochrome C 87.9 0.62 2.1E-05 33.5 4.3 27 34-60 403-429 (446)
29 1hr6_B Beta-MPP, mitochondrial 87.4 0.58 2E-05 33.4 3.8 26 34-59 403-428 (443)
30 3eoq_A Putative zinc protease; 87.3 0.51 1.7E-05 33.5 3.4 32 21-60 374-405 (406)
31 3ami_A Zinc peptidase; alpha/b 83.5 0.92 3.2E-05 32.5 3.3 27 34-60 397-423 (445)
32 1pp9_B Ubiquinol-cytochrome C 78.6 1.2 4.1E-05 31.6 2.4 32 21-60 400-431 (439)
33 3fq3_A Inorganic pyrophosphata 74.4 5.8 0.0002 26.7 4.7 43 34-76 152-195 (197)
34 1g5t_A COB(I)alamin adenosyltr 73.0 4.2 0.00014 27.1 3.8 36 31-68 136-171 (196)
35 3go9_A Insulinase family prote 69.7 2.2 7.4E-05 31.5 2.0 29 34-62 423-451 (492)
36 1sxv_A Inorganic pyrophosphata 66.9 8.4 0.00029 25.3 4.2 44 34-77 125-169 (172)
37 2prd_A Pyrophosphate phosphohy 65.6 6 0.0002 26.0 3.3 42 34-75 128-172 (174)
38 1qez_A Ppase, S-ppase, protein 65.5 10 0.00035 24.8 4.4 44 34-77 127-171 (173)
39 2e9h_A EIF-5, eukaryotic trans 59.7 27 0.00092 22.5 5.5 41 34-74 56-102 (157)
40 3gvf_A Inorganic pyrophosphata 58.9 18 0.00063 24.1 4.8 42 34-75 152-194 (196)
41 2k6g_A Replication factor C su 55.1 14 0.00048 22.1 3.4 23 49-71 34-59 (109)
42 2bqx_A Inorganic pyrophosphata 55.1 16 0.00054 23.9 3.9 42 34-75 129-171 (173)
43 2d74_B Translation initiation 54.6 32 0.0011 21.9 5.2 41 34-74 59-103 (148)
44 2au7_A Inorganic pyrophosphata 54.2 14 0.00049 24.2 3.6 42 34-75 130-172 (175)
45 3d53_A Inorganic pyrophosphata 53.5 27 0.00091 22.8 4.8 39 34-72 131-170 (173)
46 3cw1_L U1 small nuclear ribonu 53.3 27 0.00091 19.9 4.2 44 30-87 26-69 (77)
47 2ebu_A Replication factor C su 52.7 14 0.00048 22.4 3.1 24 49-72 24-50 (112)
48 3tr4_A Inorganic pyrophosphata 52.3 24 0.00081 23.2 4.4 44 34-77 132-176 (178)
49 2raq_A Conserved protein MTH88 51.8 14 0.00047 22.1 2.9 30 48-77 48-78 (97)
50 3ld3_A Inorganic pyrophosphata 51.6 19 0.00065 24.1 3.9 45 34-78 152-197 (199)
51 3dl0_A Adenylate kinase; phosp 50.9 45 0.0015 21.1 5.7 27 49-75 189-215 (216)
52 1nee_A EIF-2-beta, probable tr 49.5 27 0.00091 22.0 4.2 41 34-74 57-101 (138)
53 2x3d_A SSO6206; unknown functi 49.3 15 0.00052 21.9 2.8 29 49-77 48-77 (96)
54 3be4_A Adenylate kinase; malar 47.1 44 0.0015 21.4 5.2 37 35-71 174-216 (217)
55 3tlx_A Adenylate kinase 2; str 46.8 34 0.0012 22.6 4.7 39 35-73 198-242 (243)
56 2l4w_A Uncharacterized protein 46.3 24 0.00081 21.6 3.4 44 9-59 63-106 (120)
57 3ov5_A VIRB7 (XAC2622), unchar 45.3 26 0.0009 20.2 3.3 44 9-59 33-76 (85)
58 2cok_A Poly [ADP-ribose] polym 45.0 21 0.00072 21.5 3.1 25 49-73 12-38 (113)
59 2g2k_A EIF-5, eukaryotic trans 44.3 26 0.0009 22.9 3.6 40 35-74 50-95 (170)
60 3bpd_A Uncharacterized protein 43.9 12 0.0004 22.5 1.7 29 49-77 49-78 (100)
61 2l5l_A Thioredoxin; structural 43.9 45 0.0015 19.4 4.5 25 53-77 106-130 (136)
62 3iv3_A Tagatose 1,6-diphosphat 43.4 60 0.0021 23.3 5.7 56 16-71 211-267 (332)
63 3ns6_A Eukaryotic translation 43.2 19 0.00066 20.3 2.6 24 53-76 8-37 (100)
64 3sr0_A Adenylate kinase; phosp 43.0 48 0.0017 21.6 4.9 39 35-73 159-203 (206)
65 1aky_A Adenylate kinase; ATP:A 42.7 29 0.00099 22.2 3.7 38 36-73 175-218 (220)
66 3umf_A Adenylate kinase; rossm 42.1 55 0.0019 21.6 5.1 30 45-74 184-213 (217)
67 3fb4_A Adenylate kinase; psych 41.0 39 0.0013 21.4 4.1 31 45-75 185-215 (216)
68 3d3y_A Uncharacterized protein 40.2 14 0.00049 25.7 2.0 29 21-58 393-421 (425)
69 3gnn_A Nicotinate-nucleotide p 40.2 30 0.001 24.5 3.6 34 34-69 239-272 (298)
70 3q46_A TT-ippase; inorganic py 39.8 21 0.00071 23.5 2.6 43 34-76 129-171 (178)
71 1ak2_A Adenylate kinase isoenz 39.0 37 0.0013 22.0 3.8 41 35-75 185-231 (233)
72 2dt7_A Splicing factor 3A subu 38.7 14 0.00048 18.1 1.3 12 34-45 18-29 (38)
73 1tuz_A Diacylglycerol kinase a 38.4 8.3 0.00028 23.6 0.5 40 34-73 23-62 (118)
74 2ld7_A Histone deacetylase com 38.3 61 0.0021 19.0 5.1 38 34-77 28-65 (94)
75 2jaq_A Deoxyguanosine kinase; 38.1 50 0.0017 20.3 4.2 41 36-76 159-202 (205)
76 1l7b_A DNA ligase; BRCT, autos 37.6 26 0.00089 20.2 2.6 24 49-72 9-34 (92)
77 3paj_A Nicotinate-nucleotide p 37.6 44 0.0015 23.9 4.2 34 34-69 261-294 (320)
78 1ns5_A Hypothetical protein YB 36.7 35 0.0012 21.8 3.3 28 50-77 2-29 (155)
79 1zd8_A GTP:AMP phosphotransfer 36.3 46 0.0016 21.4 3.9 30 45-75 186-215 (227)
80 1qap_A Quinolinic acid phospho 36.1 61 0.0021 22.7 4.7 35 34-70 238-272 (296)
81 1o6d_A Hypothetical UPF0247 pr 35.8 30 0.001 22.3 2.9 27 50-77 4-30 (163)
82 3gnj_A Thioredoxin domain prot 35.5 36 0.0012 18.6 3.0 21 53-73 90-110 (111)
83 2xb4_A Adenylate kinase; ATP-b 34.0 39 0.0013 21.8 3.3 24 49-72 199-222 (223)
84 2kw7_A Conserved domain protei 34.0 40 0.0014 21.0 3.2 42 35-78 37-78 (157)
85 1h8b_A ACT-EF34, alpha-actinin 32.8 47 0.0016 18.2 3.1 26 28-70 21-46 (75)
86 3k3v_A Protein SMY2; GYF domai 32.2 67 0.0023 19.1 3.8 37 34-70 32-79 (100)
87 1sur_A PAPS reductase; assimil 32.1 81 0.0028 20.2 4.6 38 33-72 31-68 (215)
88 2e5i_A Heterogeneous nuclear r 32.1 16 0.00054 22.2 1.0 12 34-45 38-49 (124)
89 2e18_A NH(3)-dependent NAD(+) 32.0 50 0.0017 22.1 3.6 39 34-73 9-47 (257)
90 3gmt_A Adenylate kinase; ssgci 31.1 36 0.0012 23.0 2.8 38 35-72 183-227 (230)
91 2plr_A DTMP kinase, probable t 30.7 96 0.0033 19.1 5.0 39 35-74 169-207 (213)
92 1to0_A Hypothetical UPF0247 pr 30.2 32 0.0011 22.3 2.3 28 50-77 2-29 (167)
93 4id3_A DNA repair protein REV1 29.4 60 0.002 17.7 3.2 23 49-71 9-33 (92)
94 1j6w_A Autoinducer-2 productio 28.6 50 0.0017 21.7 3.0 47 31-77 52-113 (175)
95 4fak_A Ribosomal RNA large sub 27.7 37 0.0013 21.9 2.3 27 51-77 7-33 (163)
96 4eiv_A Deoxyribose-phosphate a 27.4 1.4E+02 0.0049 21.1 5.4 48 30-82 239-293 (297)
97 3tmk_A Thymidylate kinase; pho 27.1 1.4E+02 0.0046 19.6 5.1 41 34-74 156-202 (216)
98 2ikb_A Hypothetical protein NM 27.0 35 0.0012 22.0 2.0 23 22-51 47-70 (167)
99 3hxs_A Thioredoxin, TRXP; elec 26.5 62 0.0021 18.7 3.0 20 54-73 120-139 (141)
100 1vd2_A Protein kinase C, IOTA 26.2 74 0.0025 18.4 3.2 31 44-74 11-41 (89)
101 2e0q_A Thioredoxin; electron t 25.8 73 0.0025 16.8 3.1 21 53-73 83-103 (104)
102 1wf0_A TDP-43, TAR DNA-binding 25.4 26 0.00088 19.0 1.1 11 34-44 18-28 (88)
103 2o8v_A Phosphoadenosine phosph 25.3 1.5E+02 0.0051 19.7 5.1 37 34-72 33-69 (252)
104 3zzy_A Polypyrimidine tract-bi 25.3 25 0.00085 21.7 1.0 28 47-74 24-51 (130)
105 3llk_A Sulfhydryl oxidase 1; d 25.2 27 0.00094 24.3 1.3 20 34-53 238-257 (261)
106 1wh2_A Hypothetical protein AT 25.1 49 0.0017 18.6 2.2 25 34-58 34-58 (78)
107 2dpl_A GMP synthetase, GMP syn 24.8 67 0.0023 22.3 3.3 39 35-73 7-45 (308)
108 2trx_A Thioredoxin; electron t 24.6 73 0.0025 17.2 3.0 19 54-72 89-107 (108)
109 3l3e_A DNA topoisomerase 2-bin 24.5 54 0.0019 18.8 2.4 23 49-71 17-41 (107)
110 2c95_A Adenylate kinase 1; tra 24.4 72 0.0025 19.5 3.2 29 46-74 165-193 (196)
111 2dnn_A RNA-binding protein 12; 24.3 29 0.001 20.3 1.2 20 34-54 29-48 (109)
112 1q1o_A Cell division control p 24.3 61 0.0021 19.2 2.6 27 49-75 23-49 (98)
113 1n6z_A Hypothetical 12.3 kDa p 24.0 1.2E+02 0.0041 18.0 4.4 43 28-71 43-100 (105)
114 3q7c_A Nucleoprotein; deddh ex 23.9 25 0.00087 24.1 0.9 27 38-65 119-145 (243)
115 1qa6_A Ribosomal protein L11; 23.7 51 0.0017 18.0 2.0 21 55-75 26-46 (67)
116 1dby_A Chloroplast thioredoxin 23.6 95 0.0033 16.7 3.7 20 53-72 87-106 (107)
117 1zzo_A RV1677; thioredoxin fol 23.1 1.1E+02 0.0036 17.0 3.9 20 54-73 116-135 (136)
118 2dha_A FLJ20171 protein; RRM d 22.9 26 0.00089 21.0 0.8 27 49-75 21-47 (123)
119 2dgx_A KIAA0430 protein; RRM d 22.9 1E+02 0.0035 16.8 3.6 6 34-39 22-27 (96)
120 3dhf_A Nicotinamide phosphorib 22.6 1.7E+02 0.0057 22.1 5.3 25 48-72 345-369 (484)
121 3cm0_A Adenylate kinase; ATP-b 22.4 1.4E+02 0.0047 18.1 4.3 28 45-72 157-184 (186)
122 3l0g_A Nicotinate-nucleotide p 22.3 80 0.0027 22.4 3.3 35 34-70 237-271 (300)
123 3mt5_A Potassium large conduct 22.1 67 0.0023 25.6 3.1 38 38-75 21-59 (726)
124 3s5p_A Ribose 5-phosphate isom 21.9 74 0.0025 20.6 2.9 30 45-74 16-45 (166)
125 2c5k_P Vacuolar protein sortin 21.7 51 0.0017 14.8 1.4 10 34-43 12-21 (26)
126 3tco_A Thioredoxin (TRXA-1); d 21.7 80 0.0027 16.9 2.7 22 51-72 87-108 (109)
127 2lkz_A RNA-binding protein 5; 21.5 69 0.0024 18.0 2.5 30 47-76 5-34 (95)
128 2dgw_A Probable RNA-binding pr 21.3 60 0.002 17.5 2.1 35 34-69 23-68 (91)
129 2d8m_A DNA-repair protein XRCC 21.3 1E+02 0.0035 18.4 3.3 23 49-71 24-48 (129)
130 2i1o_A Nicotinate phosphoribos 21.2 1.8E+02 0.0061 21.2 5.1 33 37-70 258-290 (398)
131 3psh_A Protein HI_1472; substr 21.1 57 0.002 22.2 2.3 18 31-48 304-321 (326)
132 1x5d_A Protein disulfide-isome 21.0 71 0.0024 18.1 2.5 27 48-74 92-118 (133)
133 1yir_A Naprtase 2, nicotinate 20.9 1.7E+02 0.0058 21.4 4.9 35 35-69 297-332 (408)
134 2ebw_A DNA repair protein REV1 20.9 1.1E+02 0.0036 17.0 3.2 22 50-71 15-38 (97)
135 3m4w_A Sigma-E factor regulato 20.8 71 0.0024 22.3 2.8 21 49-69 267-287 (295)
136 1tev_A UMP-CMP kinase; ploop, 20.7 1.5E+02 0.0051 17.8 4.1 29 45-73 165-193 (196)
137 2lnh_A N-WAsp, neural wiskott- 20.5 89 0.003 16.9 2.6 12 34-45 46-57 (65)
138 1txl_A Metal-binding protein Y 20.2 99 0.0034 20.9 3.3 26 33-58 87-112 (215)
139 3tqv_A Nicotinate-nucleotide p 20.2 70 0.0024 22.5 2.6 21 49-69 241-261 (287)
140 2kpt_A Putative secreted prote 20.2 89 0.0031 19.4 2.9 40 35-76 33-72 (148)
141 2bbw_A Adenylate kinase 4, AK4 20.2 1.8E+02 0.0061 18.7 4.6 30 45-75 206-235 (246)
142 2xnq_A Nuclear polyadenylated 20.1 38 0.0013 18.9 1.1 11 34-44 36-46 (97)
143 1zwx_A SMCL, sphingomyelinase- 20.1 1E+02 0.0035 20.2 3.4 28 34-61 171-198 (301)
144 1ukz_A Uridylate kinase; trans 20.1 1.6E+02 0.0056 18.1 4.8 28 46-73 173-200 (203)
No 1
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.79 E-value=1.2e-19 Score=144.34 Aligned_cols=89 Identities=44% Similarity=0.726 Sum_probs=78.7
Q ss_pred cccCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCCCCC
Q 045879 3 KHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDRNL 82 (96)
Q Consensus 3 ~~~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~ 82 (96)
+.+++++|||+++++|+.++|..+|..+|+.++++|++||++||+|+||+|+|+|++++++++++|+++|+.|+++..+.
T Consensus 177 ~~~~~~~~py~~~~~G~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~ 256 (990)
T 3cww_A 177 KATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPL 256 (990)
T ss_dssp HHTSCTTSGGGCCCSCCHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHhcCCCCCcccCCCCCHHHHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCCC
Confidence 35688999999999999999999988888889999999999999999999999999999999999999999999876555
Q ss_pred CCCCCCCCC
Q 045879 83 FRFPGQPCT 91 (96)
Q Consensus 83 ~~~~~~~~~ 91 (96)
+.++.+++.
T Consensus 257 ~~~~~~~~~ 265 (990)
T 3cww_A 257 PEFPEHPFQ 265 (990)
T ss_dssp CCCCSCSSC
T ss_pred CCCCCCCCC
Confidence 554444553
No 2
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.78 E-value=3e-19 Score=141.21 Aligned_cols=85 Identities=29% Similarity=0.458 Sum_probs=71.3
Q ss_pred ccCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCCCCCC
Q 045879 4 HLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDRNLF 83 (96)
Q Consensus 4 ~~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~ 83 (96)
.+++++|||+++++|+.++|.+.| |+.++++|++||++||+|+||+|+|+|++++++++++|+++|++|+++..+.+
T Consensus 164 ~~~~~~~p~~~~~~G~~~~l~~~~---~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~ 240 (939)
T 1q2l_A 164 ETINPAHPGSKFSGGNLETLSDKP---GNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKP 240 (939)
T ss_dssp HSSCTTSGGGSCCSCCHHHHSCBT---TBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCC
T ss_pred HhcCCCCCCccCCCCCHHHHhcCC---CchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCC
Confidence 457889999999999999999822 22399999999999999999999999999999999999999999998765444
Q ss_pred CCCCCCCC
Q 045879 84 RFPGQPCT 91 (96)
Q Consensus 84 ~~~~~~~~ 91 (96)
....+++.
T Consensus 241 ~~~~~~~~ 248 (939)
T 1q2l_A 241 EITVPVVT 248 (939)
T ss_dssp CCCSCSCC
T ss_pred CCCCCCCC
Confidence 43334443
No 3
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=99.72 E-value=8.1e-18 Score=123.46 Aligned_cols=70 Identities=19% Similarity=0.309 Sum_probs=65.4
Q ss_pred cCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCCCC
Q 045879 5 LSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDRN 81 (96)
Q Consensus 5 ~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~ 81 (96)
.++++|||+++++|+.++|+++ ++++|++||++||+|+||+|+|+|++++++++++|+++|+.|+.+..+
T Consensus 151 ~~~~~~p~~~~~~G~~e~l~~i-------t~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~ 220 (445)
T 3ami_A 151 ASYVAHPYRVPVIGWMNDIQNM-------TAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAP 220 (445)
T ss_dssp HHCSSSGGGSCTTCCHHHHHHC-------CHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCC
T ss_pred HhccCCCCCCCCCCCHHHHhhC-------CHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCC
Confidence 4578999999999999999998 999999999999999999999999999999999999999999876543
No 4
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=99.72 E-value=5.9e-18 Score=122.94 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=65.6
Q ss_pred ccCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCCCC
Q 045879 4 HLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDRN 81 (96)
Q Consensus 4 ~~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~ 81 (96)
..++++|||+++++|+.++|.++ ++++|++||++||+|+||+|+|+|++++++++++++++|++|+.+..+
T Consensus 143 ~~~~~~~p~~~~~~G~~~~i~~~-------t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~ 213 (406)
T 3eoq_A 143 ARFFQGHPLGNSVLGTRESITAL-------TREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAE 213 (406)
T ss_dssp HHHHTTCGGGCCSSCCHHHHHHC-------CHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCC
T ss_pred HHhcCCCCCCCCCcCCHHHHhhC-------CHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCC
Confidence 34677999999999999999998 999999999999999999999999999999999999999999875443
No 5
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.70 E-value=6.7e-18 Score=134.60 Aligned_cols=66 Identities=14% Similarity=0.151 Sum_probs=63.3
Q ss_pred ccCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhccc
Q 045879 4 HLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIR 76 (96)
Q Consensus 4 ~~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~ 76 (96)
..++++|||+++++|+.++|.++ ++++|++||++||+|+||+|+|+|++++++++++|+++|+.|+
T Consensus 195 ~~~~~~~py~~~~~G~~~~i~~~-------t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~ 260 (995)
T 2fge_A 195 QALSPENTYGVDSGGDPKDIPNL-------TFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFE 260 (995)
T ss_dssp HHHCTTSGGGSCTTCCTTTGGGC-------CHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCC
T ss_pred HHhCCCCCCCCCCCCChHhhhhc-------CHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCC
Confidence 35678999999999999999998 9999999999999999999999999999999999999999998
No 6
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=99.66 E-value=1.5e-16 Score=115.68 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=64.4
Q ss_pred cCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCCCC
Q 045879 5 LSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDRN 81 (96)
Q Consensus 5 ~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~ 81 (96)
.++++|||+++++|+.++|+++ ++++|++||+++|+|+||+|+|+|+++ ++++++++++|+.|+.+..+
T Consensus 145 ~~~~~~p~~~~~~G~~~~l~~i-------t~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~ 213 (421)
T 3hdi_A 145 ATYGKHSLGYPILGTVETLNSF-------NEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPTTYN 213 (421)
T ss_dssp HHHTTSGGGSCTTCCHHHHHHC-------CHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCC
T ss_pred HhcCCCCCCCCCcCCHHHHHhC-------CHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCCCCCC
Confidence 4668999999999999999998 999999999999999999999999999 99999999999999876543
No 7
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.65 E-value=1.4e-16 Score=130.66 Aligned_cols=69 Identities=16% Similarity=0.283 Sum_probs=64.8
Q ss_pred ccCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCC
Q 045879 4 HLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTD 79 (96)
Q Consensus 4 ~~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~ 79 (96)
..++++|||++++.|++++|.++ ++++|++||++||+|+||+|+|+|+++++++.++|+++|+.|+.+.
T Consensus 261 ~~lf~~hpY~~~~~G~~e~I~~l-------t~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~~~f~~~~~~~ 329 (1193)
T 3s5m_A 261 KYMFPDNVHSNNSGGDPKEITNL-------TYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQYLGQLDYSK 329 (1193)
T ss_dssp HHHCTTSGGGSCTTCCHHHHTTC-------CHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHHHHHTTCCGGG
T ss_pred HHhCCCCCCCCCCCCCHHHHhhC-------CHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHHHHhccCCCCC
Confidence 34678999999999999999998 9999999999999999999999999999999999999999998653
No 8
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=99.64 E-value=3e-16 Score=115.16 Aligned_cols=69 Identities=17% Similarity=0.277 Sum_probs=64.7
Q ss_pred cCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCCC
Q 045879 5 LSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDR 80 (96)
Q Consensus 5 ~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~ 80 (96)
.++++|||+++++|+.++|+++ ++++|++||++||+|+||+|+|+|+++.++++++++++|+.|+.+..
T Consensus 156 ~~~~~~~~~~~~~G~~~~l~~~-------~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~ 224 (446)
T 1pp9_A 156 TAFQGTPLAQSVEGPSENVRKL-------SRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYD 224 (446)
T ss_dssp HHTTTSGGGSCSSCCHHHHHHC-------CHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCC
T ss_pred HhcCCCCCCCCCcCCHHHHHhC-------CHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCCCC
Confidence 4578999999999999999998 99999999999999999999999999999999999999999987544
No 9
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=99.62 E-value=8.4e-16 Score=112.19 Aligned_cols=69 Identities=16% Similarity=0.313 Sum_probs=64.5
Q ss_pred cCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCCC
Q 045879 5 LSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDR 80 (96)
Q Consensus 5 ~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~ 80 (96)
.++++|||+++++|+.++|+++ ++++|++||+++|+|+||+|+|+|+++.++++++++++|+.|+....
T Consensus 150 ~~~~~~~~~~~~~g~~~~i~~~-------~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~ 218 (443)
T 1hr6_B 150 ITYKDQPLGRTILGPIKNIKSI-------TRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSES 218 (443)
T ss_dssp HHTTTSGGGSCSSCCHHHHHHC-------CHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSS
T ss_pred HhcCCCCCCCCCcCCHHHHhhC-------CHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCC
Confidence 4578999999999999999998 99999999999999999999999999999999999999999986543
No 10
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=99.58 E-value=2.1e-15 Score=111.82 Aligned_cols=69 Identities=10% Similarity=0.053 Sum_probs=64.0
Q ss_pred ccCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCCC
Q 045879 4 HLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDR 80 (96)
Q Consensus 4 ~~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~ 80 (96)
.+++++|||+++++|+.++|+++ ++++|++||++||+|+||+|+|+| +++++++++++++|+.|+....
T Consensus 147 ~~~~~~~~~~~~~~G~~~~l~~i-------t~~~l~~f~~~~y~p~n~~l~v~G-~d~~~~~~~i~~~f~~~~~~~~ 215 (475)
T 1hr6_A 147 TAAYSGETLGSPLICPRGLIPSI-------SKYYLLDYRNKFYTPENTVAAFVG-VPHEKALELTGKYLGDWQSTHP 215 (475)
T ss_dssp HHHTTTSGGGSCSSCCGGGGGGC-------CHHHHHHHHHHHCCGGGEEEEEES-SCHHHHHHHHHHHHTTCCCCCC
T ss_pred HHhcCCCCCCCCCcCCHHHHhhc-------CHHHHHHHHHHhCCcccEEEEEeC-CCHHHHHHHHHHHhccCCCCCC
Confidence 34678999999999999999998 999999999999999999999999 9999999999999999986543
No 11
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=99.57 E-value=3.9e-15 Score=108.08 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=64.5
Q ss_pred cCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCCC
Q 045879 5 LSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDR 80 (96)
Q Consensus 5 ~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~ 80 (96)
+++++|||++++.|+.++|+++ ++++|++||+++|+|+||+|+|+|+++.+++.++++++|+.|+.+..
T Consensus 158 ~~~~~~~~~~~~~G~~~~l~~i-------t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~ 226 (434)
T 3gwb_A 158 RLYGTHPYAHASDGDAKSIPPI-------TLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPA 226 (434)
T ss_dssp HHHTTSTTSSCTTCCTTTTTTC-------CHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCC
T ss_pred HhcCCCCCCCCCCCCHHHHHhC-------CHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCC
Confidence 4567999999999999999998 99999999999999999999999999999999999999999987643
No 12
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=99.53 E-value=7.1e-15 Score=106.46 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=63.7
Q ss_pred cCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCCC
Q 045879 5 LSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDR 80 (96)
Q Consensus 5 ~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~ 80 (96)
.++++|||+++++|+.++|.++ ++++|++||+++|+|+||+|+|+|+++.++++++++++|+.|+.+..
T Consensus 141 ~~~~~~~~~~~~~g~~~~l~~~-------t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~~~ 209 (431)
T 3cx5_A 141 TAFQNTPLSLPTRGTLESLENL-------VVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTK 209 (431)
T ss_dssp HHTTTSGGGSCTTCCHHHHHTC-------CHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCC
T ss_pred HhcCCCCCCCCCCCCHHHHhhC-------CHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCCCC
Confidence 4567999999999999999998 99999999999999999999999999999999999998888886543
No 13
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=99.52 E-value=1.5e-14 Score=104.83 Aligned_cols=68 Identities=19% Similarity=0.307 Sum_probs=62.3
Q ss_pred cCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCCCC
Q 045879 5 LSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDRN 81 (96)
Q Consensus 5 ~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~ 81 (96)
.++++|||++++ +.++|+++ ++++|++||+++|+|+||+|+|+|+++.++++++++++|+.|+.+..+
T Consensus 153 ~~~~~~p~~~~~--~~~~l~~i-------t~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~ 220 (424)
T 3amj_B 153 LAYGKHPYGHVS--SVATLQKI-------SRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATL 220 (424)
T ss_dssp HHHTTSGGGCCC--CHHHHHHC-------CHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCC
T ss_pred hcCCCCCCCCCC--CHHHHHhC-------CHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCC
Confidence 456799999988 89999998 999999999999999999999999999999999999999999865443
No 14
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=99.51 E-value=6.2e-14 Score=105.23 Aligned_cols=65 Identities=14% Similarity=0.225 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCC
Q 045879 6 SSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTD 79 (96)
Q Consensus 6 ~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~ 79 (96)
++..|+++++..| ++|+++ ++++|++||++||+|+||+|+|+|++++++++++|+++|++|+.+.
T Consensus 176 ~~~~~~~~~~~~~--~~i~~i-------t~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~~~ 240 (492)
T 3go9_A 176 LKGSSLIGHDPGQ--PVTQPV-------DVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKR 240 (492)
T ss_dssp TTTSTTTTCCTTC--CCCSSC-------CHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCC
T ss_pred hccCCcccCCCch--hhhhcC-------CHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCCCC
Confidence 4567777777655 478887 9999999999999999999999999999999999999999998764
No 15
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=99.49 E-value=2.4e-14 Score=103.30 Aligned_cols=67 Identities=12% Similarity=0.186 Sum_probs=62.0
Q ss_pred cCC-CCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCCC
Q 045879 5 LSS-EDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDR 80 (96)
Q Consensus 5 ~~~-~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~ 80 (96)
.++ ++|||++++.|+.++|+++ ++++|++||+++|.|+||+|+|+|+++.+++++++ ++|+ |+.+..
T Consensus 161 ~~~~~~~~~~~~~~g~~~~l~~~-------t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~~~~ 228 (425)
T 3d3y_A 161 VYFNQSEDQKIPSFGTVAALAEE-------TAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTPREE 228 (425)
T ss_dssp HHTTTCTTTTSCTTCCHHHHHHC-------CHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCCCCC
T ss_pred HhccCCCCccCCCCCCHHHHHhC-------CHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCcccc
Confidence 345 8899999999999999998 99999999999999999999999999999999999 9999 986543
No 16
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=99.46 E-value=6e-14 Score=99.82 Aligned_cols=64 Identities=8% Similarity=0.126 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHH-HHHhhcccCCCC
Q 045879 6 SSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLV-ENKFQDIRNTDR 80 (96)
Q Consensus 6 ~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v-~~~f~~~~~~~~ 80 (96)
+++ |||+++++ .++|+++ ++++|++||+++|+|+||+|+|+| ++++++++++ +++|+.|+.+..
T Consensus 134 ~~~-~p~~~~~~--~~~l~~i-------t~~~l~~f~~~~y~~~n~~l~v~G-~~~~~~~~~i~~~~f~~~~~~~~ 198 (352)
T 3cx5_B 134 TFR-KGLGNPLL--YDGVERV-------SLQDIKDFADKVYTKENLEVSGEN-VVEADLKRFVDESLLSTLPAGKS 198 (352)
T ss_dssp HHT-TTTTSCSS--CCSSSCC-------CHHHHHHHHHHHCCGGGEEEEEES-SCHHHHHHHHHHSTTTTSCCCCC
T ss_pred HhC-CCCCCccc--hhhhccC-------CHHHHHHHHHHhCCcCcEEEEEeC-CCHHHHHHHHHHHhhccCCCCCC
Confidence 455 99999986 5689887 999999999999999999999999 9999999999 899999986543
No 17
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=99.43 E-value=1.4e-13 Score=100.01 Aligned_cols=65 Identities=17% Similarity=0.107 Sum_probs=60.3
Q ss_pred cCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCC
Q 045879 5 LSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTD 79 (96)
Q Consensus 5 ~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~ 79 (96)
.+++ |||+++..|+.++|.++ ++++|++||+++|+|+||+|+|+|+ +.++++++++++|+ |+.+.
T Consensus 166 ~~~~-~~~~~~~~g~~~~l~~i-------t~~~l~~f~~~~y~~~~~~l~v~G~-~~~~~~~~~~~~~~-~~~~~ 230 (439)
T 1pp9_B 166 AAYR-NALANSLYCPDYRIGKV-------TPVELHDYVQNHFTSARMALIGLGV-SHPVLKQVAEQFLN-IRGGL 230 (439)
T ss_dssp HHBS-SGGGSCSSCCGGGTTTC-------CHHHHHHHHHHHCSGGGEEEEEESS-CHHHHHHHHHHHCC-CCCCC
T ss_pred HHhc-CCCCCCccCCHHHHhhc-------CHHHHHHHHHHhCCCCceEEEEeCC-CHHHHHHHHHHHhC-CCCCC
Confidence 3567 99999999999999998 9999999999999999999999999 99999999999999 88654
No 18
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=98.33 E-value=4.6e-07 Score=71.73 Aligned_cols=58 Identities=10% Similarity=0.067 Sum_probs=52.5
Q ss_pred CCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCC
Q 045879 14 KFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNT 78 (96)
Q Consensus 14 ~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~ 78 (96)
....|..++|+++ +.++|++||+++|.+.++.++|+||++.+++.++++++|+.|+.+
T Consensus 647 ~~~~~~~~~l~~i-------t~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~ 704 (939)
T 1q2l_A 647 FSRDERRKILPSI-------TLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGAD 704 (939)
T ss_dssp CCHHHHHHHGGGC-------CHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHhcC-------CHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHccC
Confidence 4445788899987 999999999999999999999999999999999999999988754
No 19
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=97.80 E-value=3.5e-05 Score=61.57 Aligned_cols=47 Identities=9% Similarity=0.056 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCC-HHHHHHHHHHHhhcc-cCCCC
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKES-VDKIQGLVENKFQDI-RNTDR 80 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~-~~~l~~~v~~~f~~~-~~~~~ 80 (96)
.+++|++||+++|.+++|+++|+|+++ .+++.++++++|+.+ +....
T Consensus 741 i~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~~~~l~p~~~~ 789 (995)
T 2fge_A 741 ISSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLLPENPSG 789 (995)
T ss_dssp HHHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTSCSSCSS
T ss_pred HHHHHHHHHHHHcCcCCcEEEEEeCHHHHHHHHHHHHHHHHhhCccCCC
Confidence 489999999999999999999999999 499999999999999 76443
No 20
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=97.27 E-value=0.00011 Score=58.64 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=49.4
Q ss_pred CCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHH---HHHHhhcccC
Q 045879 10 HPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGL---VENKFQDIRN 77 (96)
Q Consensus 10 hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~---v~~~f~~~~~ 77 (96)
++|. ..+..+.|+.+ +.++|.+||++++.+.++.++|+||++.+++.++ +.++|+.++.
T Consensus 664 ~~~~--~~~~~~~l~~l-------t~~~l~~~~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l~~l~~ 725 (990)
T 3cww_A 664 VAWT--KDELKEALADV-------TLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAH 725 (990)
T ss_dssp SCCC--HHHHHHHHTTC-------CHHHHHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCC--HHHHHHHHhcC-------CHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHhccCC
Confidence 4444 23567788887 8999999999999999999999999999998887 7788887764
No 21
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=92.10 E-value=0.11 Score=36.96 Aligned_cols=33 Identities=15% Similarity=0.106 Sum_probs=29.1
Q ss_pred hhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCC
Q 045879 21 ETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES 60 (96)
Q Consensus 21 ~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~ 60 (96)
+.|.++ +.+||+++.++++.+++++++++|+..
T Consensus 390 ~~i~~v-------t~~dv~~~a~~~l~~~~~~~~vvg~~~ 422 (434)
T 3gwb_A 390 RQSQEL-------TVEQVKAAMNKHLNVDKMVIVSAGPTV 422 (434)
T ss_dssp HHHHHC-------CHHHHHHHHHHHCCGGGCEEEEEECCC
T ss_pred HHHHhC-------CHHHHHHHHHHhcChhhEEEEEEcCcc
Confidence 456666 999999999999999999999999855
No 22
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=91.81 E-value=0.08 Score=44.06 Aligned_cols=43 Identities=9% Similarity=0.170 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCC-HHHHHHHHHHHhhccc
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKES-VDKIQGLVENKFQDIR 76 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~-~~~l~~~v~~~f~~~~ 76 (96)
.+++|.++|++.+.++||+++|+|+.+ .+++.+.++++|+.++
T Consensus 912 l~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~ 955 (1193)
T 3s5m_A 912 LENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLV 955 (1193)
T ss_dssp HHHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHHhhh
Confidence 378999999999999999999999986 5777777777776653
No 23
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=91.59 E-value=0.18 Score=35.87 Aligned_cols=32 Identities=6% Similarity=0.133 Sum_probs=28.1
Q ss_pred hhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCC
Q 045879 21 ETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES 60 (96)
Q Consensus 21 ~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~ 60 (96)
+.|.++ +.+||+++.++++ +++++++++|+.+
T Consensus 374 ~~i~~v-------t~~dv~~~a~~~~-~~~~~~~vvgp~~ 405 (421)
T 3hdi_A 374 EQINAV-------QKQDVSRLAKILL-SASPSISLINANG 405 (421)
T ss_dssp HHHHHC-------CHHHHHHHHHHHT-TSCCEEEEEESSC
T ss_pred HHHHcC-------CHHHHHHHHHHHc-ccCcEEEEECchh
Confidence 456666 9999999999999 9999999999864
No 24
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=90.97 E-value=0.2 Score=32.16 Aligned_cols=33 Identities=3% Similarity=-0.108 Sum_probs=27.7
Q ss_pred hhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCC
Q 045879 21 ETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES 60 (96)
Q Consensus 21 ~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~ 60 (96)
+.|.++ +.+|++++.++|+.++++++++.|+.+
T Consensus 163 ~~i~~v-------T~~dv~~~a~~~l~~~~~~~~~~~P~~ 195 (197)
T 3ih6_A 163 DRVREA-------KLDDVQRAAVAYLVRSNRTEGRYIPTE 195 (197)
T ss_dssp HHHHTC-------CHHHHHHHHHHHSSGGGCEEEEECC--
T ss_pred HHHHhC-------CHHHHHHHHHHhCCccCeEEEEEeCCC
Confidence 456666 999999999999999999999998754
No 25
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=90.36 E-value=0.21 Score=35.49 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=29.3
Q ss_pred HhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCC
Q 045879 20 WETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES 60 (96)
Q Consensus 20 ~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~ 60 (96)
.+.|.++ +.+|++++.++++.+++++++++|+..
T Consensus 382 ~~~i~~v-------t~~dv~~~a~~~l~~~~~~~~~~~~~~ 415 (424)
T 3amj_B 382 TERVQAV-------TVEQVREAFARHVKRENLITVVVGGKA 415 (424)
T ss_dssp HHHHHTC-------CHHHHHHHHHHHCCGGGCEEEEEECC-
T ss_pred HHHHHcC-------CHHHHHHHHHHhcCccceEEEEECChh
Confidence 4566666 999999999999999999999999864
No 26
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=89.86 E-value=0.35 Score=34.24 Aligned_cols=33 Identities=3% Similarity=0.042 Sum_probs=28.8
Q ss_pred hhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCC
Q 045879 21 ETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES 60 (96)
Q Consensus 21 ~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~ 60 (96)
+.|.++ +.+||+++.+++..+++++++++|+.+
T Consensus 382 ~~i~~v-------t~~dv~~~a~~~l~~~~~~~~v~g~~~ 414 (431)
T 3cx5_A 382 KKIDAI-------TVKDVKAWAGKRLWDQDIAIAGTGQIE 414 (431)
T ss_dssp HHHHHC-------CHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HHHhcC-------CHHHHHHHHHHHcccCCcEEEEEcchh
Confidence 456665 899999999999999999999999865
No 27
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=88.69 E-value=0.62 Score=33.91 Aligned_cols=26 Identities=4% Similarity=0.146 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhhcCC---------CCcEEEEEcCC
Q 045879 34 TRHELIKFYNEHYSS---------NLMHLVVYSKE 59 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~---------~~~~l~v~G~~ 59 (96)
+.++++++.++++.+ ++++++++|+.
T Consensus 403 t~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~ 437 (475)
T 1hr6_A 403 KPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDR 437 (475)
T ss_dssp CHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCG
T ss_pred CHHHHHHHHHHHhhhccccccccCCCcEEEEECCc
Confidence 899999999999998 69999999987
No 28
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=87.93 E-value=0.62 Score=33.45 Aligned_cols=27 Identities=0% Similarity=-0.011 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCC
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKES 60 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~ 60 (96)
+.+|++++.+++..+++++++++|+.+
T Consensus 403 t~edv~~~a~~~~~~~~~~~~~~g~~~ 429 (446)
T 1pp9_A 403 DARVVREVCSKYFYDQCPAVAGFGPIE 429 (446)
T ss_dssp CHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred CHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 899999999999999999999999864
No 29
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=87.45 E-value=0.58 Score=33.43 Aligned_cols=26 Identities=15% Similarity=0.324 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCC
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKE 59 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~ 59 (96)
+.+|++++.+++..+++++++++|+.
T Consensus 403 t~~dv~~~a~~~l~~~~~~~~v~g~~ 428 (443)
T 1hr6_B 403 TKDDIIMWANYRLQNKPVSMVALGNT 428 (443)
T ss_dssp CHHHHHHHHHHHSSSCCEEEEEEECG
T ss_pred CHHHHHHHHHHHhccCCcEEEEECCc
Confidence 89999999999999999999999985
No 30
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=87.29 E-value=0.51 Score=33.50 Aligned_cols=32 Identities=6% Similarity=0.069 Sum_probs=27.7
Q ss_pred hhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCC
Q 045879 21 ETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES 60 (96)
Q Consensus 21 ~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~ 60 (96)
+.|.++ +.+|+++..++++.++++ ++++|+..
T Consensus 374 ~~i~~v-------t~~dv~~~a~~~l~~~~~-~~vvGp~~ 405 (406)
T 3eoq_A 374 ARVQRV-------TSREVNALLERGFLEKGL-YYLVLPHG 405 (406)
T ss_dssp HHHHHC-------CHHHHHHHHHTTTTTSCE-EEEEECCC
T ss_pred HHHHhC-------CHHHHHHHHHHhcCcccE-EEEECCCC
Confidence 456665 999999999999999999 99999864
No 31
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=83.46 E-value=0.92 Score=32.53 Aligned_cols=27 Identities=7% Similarity=-0.012 Sum_probs=25.3
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCC
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKES 60 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~ 60 (96)
+.+++.++.++++.+++++++++|+..
T Consensus 397 t~~dv~~~a~~~l~~~~~~~~~~~p~~ 423 (445)
T 3ami_A 397 TAAEVKAAAARLLTDDTLTVANLVPLP 423 (445)
T ss_dssp CHHHHHHHHHTTSCSTTEEEEEEEEEC
T ss_pred CHHHHHHHHHHHcCcCCeEEEEEccCc
Confidence 899999999999999999999999854
No 32
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=78.56 E-value=1.2 Score=31.59 Aligned_cols=32 Identities=6% Similarity=0.097 Sum_probs=26.9
Q ss_pred hhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCC
Q 045879 21 ETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES 60 (96)
Q Consensus 21 ~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~ 60 (96)
+.|.++ +.+||+++.+++.. ++++++++|+.+
T Consensus 400 ~~i~~v-------t~~dv~~~a~~~~~-~~~~~~v~g~~~ 431 (439)
T 1pp9_B 400 QQIDAV-------ADADVINAAKKFVS-GRKSMAASGNLG 431 (439)
T ss_dssp HHHHTC-------CHHHHHHHHHHHHH-SCEEEEEEECGG
T ss_pred HHHhcC-------CHHHHHHHHHHHhc-CCceEEEECCcc
Confidence 456665 89999999999887 899999999854
No 33
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal INOR pyrophosphatase; ssgcid, inorganic phosphatase; 1.90A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3sw5_A
Probab=74.36 E-value=5.8 Score=26.65 Aligned_cols=43 Identities=7% Similarity=0.089 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhhcCCC-CcEEEEEcCCCHHHHHHHHHHHhhccc
Q 045879 34 TRHELIKFYNEHYSSN-LMHLVVYSKESVDKIQGLVENKFQDIR 76 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~-~~~l~v~G~~~~~~l~~~v~~~f~~~~ 76 (96)
..++++.||+.|=.+. +=.+.+.|=.+.+++.+.|++....|.
T Consensus 152 ~l~~I~~fF~~YK~le~~K~v~v~~~~~~~~A~~~I~~~~~~~~ 195 (197)
T 3fq3_A 152 TLKQIAHFFEHYKDLEPGKWVKIGDWGDEDYARKFIVEAIERAK 195 (197)
T ss_dssp HHHHHHHHHHHTTTTSTTCCEEECCCBCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCcCCCCeEEeCCCCCHHHHHHHHHHHHHHHh
Confidence 7999999998766655 556778888999999999988877664
No 34
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=72.97 E-value=4.2 Score=27.11 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=29.3
Q ss_pred CcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHH
Q 045879 31 GLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLV 68 (96)
Q Consensus 31 ~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v 68 (96)
|+...+++.+++.+ .|.++.|++.|+..++++.+++
T Consensus 136 g~l~~~ev~~~l~~--Rp~~~~vIlTGr~ap~~l~e~A 171 (196)
T 1g5t_A 136 DYLPLEEVISALNA--RPGHQTVIITGRGCHRDILDLA 171 (196)
T ss_dssp TSSCHHHHHHHHHT--SCTTCEEEEECSSCCHHHHHHC
T ss_pred CCCCHHHHHHHHHh--CcCCCEEEEECCCCcHHHHHhC
Confidence 33478889999985 6778999999999988888865
No 35
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=69.71 E-value=2.2 Score=31.54 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHH
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVD 62 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~ 62 (96)
+.++|+++.++++.+++.+++|.++-..+
T Consensus 423 T~edV~~~a~~~l~~~~~~vvvg~~~~~e 451 (492)
T 3go9_A 423 TLAELNRELKQQLSQDTTLVLMQPKGEPE 451 (492)
T ss_dssp CHHHHHHHHHHHHTSCCEEEEEEETTSCC
T ss_pred CHHHHHHHHHHHhCCCCeEEEEcCCCCCC
Confidence 99999999999999865555555444433
No 36
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A 4ecp_A
Probab=66.90 E-value=8.4 Score=25.29 Aligned_cols=44 Identities=5% Similarity=0.005 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhhcCCC-CcEEEEEcCCCHHHHHHHHHHHhhcccC
Q 045879 34 TRHELIKFYNEHYSSN-LMHLVVYSKESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~-~~~l~v~G~~~~~~l~~~v~~~f~~~~~ 77 (96)
.+++++.||+.|=.+. .=.+.+.|=.+.+++.+.|++....|..
T Consensus 125 ~l~~I~~fF~~YK~le~gK~v~v~gw~~~~~A~~~I~~~~~~~~~ 169 (172)
T 1sxv_A 125 ELDAIKHFFVHYKDLEPGKFVKAADWVDRAEAEAEVQRSVERFKA 169 (172)
T ss_dssp HHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCcCCCCeEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 7899999999877766 4446778888999999999888776654
No 37
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1
Probab=65.58 E-value=6 Score=26.00 Aligned_cols=42 Identities=10% Similarity=0.026 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhhcCCC---CcEEEEEcCCCHHHHHHHHHHHhhcc
Q 045879 34 TRHELIKFYNEHYSSN---LMHLVVYSKESVDKIQGLVENKFQDI 75 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~---~~~l~v~G~~~~~~l~~~v~~~f~~~ 75 (96)
.++++++||+.|=.++ +=.+.+.|=.+.+++.+.|++....+
T Consensus 128 ~l~~i~~fF~~YK~le~k~gK~v~~~gw~~~~~A~~~I~~~~~~~ 172 (174)
T 2prd_A 128 VKQEIQHFFETYKALEAKKGKWVKVTGWRDRKAALEEVRACIARY 172 (174)
T ss_dssp HHHHHHHHHHHTTGGGGGGTCCEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccCCCceEECcccCHHHHHHHHHHHHHHH
Confidence 7899999998776665 55567778889999999888766544
No 38
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=65.48 E-value=10 Score=24.83 Aligned_cols=44 Identities=7% Similarity=0.160 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhhcCCC-CcEEEEEcCCCHHHHHHHHHHHhhcccC
Q 045879 34 TRHELIKFYNEHYSSN-LMHLVVYSKESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~-~~~l~v~G~~~~~~l~~~v~~~f~~~~~ 77 (96)
.++++++||+.|=.+. .=.+.+.|=.+.+++.+.|++....|..
T Consensus 127 ~l~~i~~fF~~YK~le~gK~v~~~gw~~~~~A~~~I~~~~~~~~~ 171 (173)
T 1qez_A 127 TKNKIVHFFEHYKELEPGKYVKISGWGSATEAKNRIQLAIKRVSG 171 (173)
T ss_dssp HHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhccccCCCceEEccccCHHHHHHHHHHHHHHHHh
Confidence 7899999999877776 3446678888999999999887766653
No 39
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.70 E-value=27 Score=22.52 Aligned_cols=41 Identities=10% Similarity=0.214 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhhcCC------CCcEEEEEcCCCHHHHHHHHHHHhhc
Q 045879 34 TRHELIKFYNEHYSS------NLMHLVVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~------~~~~l~v~G~~~~~~l~~~v~~~f~~ 74 (96)
..+.+.+|+..-..+ ++=.++|.|.++.+++++++++|...
T Consensus 56 ~p~hv~ky~~~ELGt~g~id~~~~rlii~G~~~~~~i~~~L~~yI~~ 102 (157)
T 2e9h_A 56 PPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKK 102 (157)
T ss_dssp CTHHHHHHHHHHHTCCEEEETTTTEEEEEBCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCceeecCCCCEEEEEeeeCHHHHHHHHHHHHHH
Confidence 367788898876654 36689999999999999999999876
No 40
>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, S structural genomics center for infectious disease, ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei 1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A*
Probab=58.92 E-value=18 Score=24.15 Aligned_cols=42 Identities=7% Similarity=0.164 Sum_probs=33.8
Q ss_pred hHHHHHHHHHhhcCCC-CcEEEEEcCCCHHHHHHHHHHHhhcc
Q 045879 34 TRHELIKFYNEHYSSN-LMHLVVYSKESVDKIQGLVENKFQDI 75 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~-~~~l~v~G~~~~~~l~~~v~~~f~~~ 75 (96)
.+++++.||+.|=.++ +=.+.+.|=.+.+++.+.|++....+
T Consensus 152 ~l~~I~~fF~~YK~le~gK~v~v~gw~~~~~A~~~I~~~~~~y 194 (196)
T 3gvf_A 152 LKDQIKHFFEQYKALEKGKWVKVEGWDGIDAAHKEITDGVANF 194 (196)
T ss_dssp HHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcCCCCeEEeccCcCHHHHHHHHHHHHHHH
Confidence 7999999999877776 45567788889999999988776554
No 41
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=55.09 E-value=14 Score=22.15 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=19.7
Q ss_pred CCcEEEEEcCC---CHHHHHHHHHHH
Q 045879 49 NLMHLVVYSKE---SVDKIQGLVENK 71 (96)
Q Consensus 49 ~~~~l~v~G~~---~~~~l~~~v~~~ 71 (96)
..+++|+.|.+ +.+++.++|+.+
T Consensus 34 ~G~~~v~TG~l~~~~R~e~~~~i~~~ 59 (109)
T 2k6g_A 34 EGLIFVITGVLESIERDEAKSLIERY 59 (109)
T ss_dssp TTCEEEEESBCSSCCHHHHHHHHHHT
T ss_pred CCCEEEEeeeCCCCCHHHHHHHHHHc
Confidence 48999999998 579999998775
No 42
>2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori} PDB: 1ygz_A 2bqy_A
Probab=55.07 E-value=16 Score=23.91 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=32.7
Q ss_pred hHHHHHHHHHhhcCCC-CcEEEEEcCCCHHHHHHHHHHHhhcc
Q 045879 34 TRHELIKFYNEHYSSN-LMHLVVYSKESVDKIQGLVENKFQDI 75 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~-~~~l~v~G~~~~~~l~~~v~~~f~~~ 75 (96)
.++++.+||+.|=.+. .=.+.+.|=.+.+++.+.|++....+
T Consensus 129 ~l~~i~~fF~~YK~le~gK~v~~~g~~~~~~A~~~I~~~~~~~ 171 (173)
T 2bqx_A 129 TLDKIKHFFETYKDLEPNKWVKVKGFENKESAIKVLEKAIKAY 171 (173)
T ss_dssp HHHHHHHHHHHTTTTSTTCCEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCceeeCcCcCHHHHHHHHHHHHHHH
Confidence 7899999999877776 34566778888888988888766544
No 43
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=54.65 E-value=32 Score=21.94 Aligned_cols=41 Identities=12% Similarity=0.164 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhhcCCC----CcEEEEEcCCCHHHHHHHHHHHhhc
Q 045879 34 TRHELIKFYNEHYSSN----LMHLVVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~----~~~l~v~G~~~~~~l~~~v~~~f~~ 74 (96)
..+.+.+|+..-..+. +=.++|.|.++.+++++++++|...
T Consensus 59 ~p~hv~ky~~~ELGt~g~id~~rlii~G~~~~~~i~~~L~~yI~~ 103 (148)
T 2d74_B 59 DPQHLLKFLLREIATAGTLEGRRVVLQGRFTPYLIANKLKKYIKE 103 (148)
T ss_dssp CSHHHHHHHHHHSCCCEEEETTEEEESSCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCceeecCCEEEEEeeeCHHHHHHHHHHHHHH
Confidence 4677889998877774 5689999999999999999999875
No 44
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A 2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A 1mjz_A 1mjx_A 1mjw_A 3i4q_A*
Probab=54.22 E-value=14 Score=24.18 Aligned_cols=42 Identities=10% Similarity=0.147 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhhcCCC-CcEEEEEcCCCHHHHHHHHHHHhhcc
Q 045879 34 TRHELIKFYNEHYSSN-LMHLVVYSKESVDKIQGLVENKFQDI 75 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~-~~~l~v~G~~~~~~l~~~v~~~f~~~ 75 (96)
.++++.+||+.|=... .=.+-+.|=.+.+++.+.|++....|
T Consensus 130 ~l~~i~~fF~~YK~le~gK~v~v~gw~~~~~A~~~I~~~~~~~ 172 (175)
T 2au7_A 130 LKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEIVASFERA 172 (175)
T ss_dssp HHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCccCCCCeEEccccCHHHHHHHHHHHHHHH
Confidence 7899999998776665 44566778888889998888776554
No 45
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=53.46 E-value=27 Score=22.85 Aligned_cols=39 Identities=10% Similarity=0.142 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhhcCCC-CcEEEEEcCCCHHHHHHHHHHHh
Q 045879 34 TRHELIKFYNEHYSSN-LMHLVVYSKESVDKIQGLVENKF 72 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~-~~~l~v~G~~~~~~l~~~v~~~f 72 (96)
.++++++||+.|=... .=.+.+.|=.+.+++.+.|++..
T Consensus 131 ~l~~i~~fF~~YK~le~gK~v~v~gw~~~~~A~~~I~~~~ 170 (173)
T 3d53_A 131 LKKRIVHFFEHYKDLEKGKWVKVTGWGDKVKAETLIKEGI 170 (173)
T ss_dssp HHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccCCCcEEEccCcCHHHHHHHHHHHH
Confidence 7899999999877776 34466788888888888887654
No 46
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=53.32 E-value=27 Score=19.89 Aligned_cols=44 Identities=11% Similarity=0.280 Sum_probs=28.4
Q ss_pred CCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCCCCCCCCCC
Q 045879 30 KGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDRNLFRFPG 87 (96)
Q Consensus 30 ~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~~~ 87 (96)
.|..-++.+..||++++. ++++.++++.-.....+..+.+.+..
T Consensus 26 ~G~kH~~nv~~yy~~~~~--------------~~~~~~id~~~~a~~~g~~~~~~~~~ 69 (77)
T 3cw1_L 26 SGRKHKENVKDYYCKWME--------------EQAQSLIDKTTAAFQQGKIPPTPFSA 69 (77)
T ss_pred ccHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhhcCCCCCCCCCC
Confidence 444577888999998874 55566666665555666665555443
No 47
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.73 E-value=14 Score=22.35 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=19.9
Q ss_pred CCcEEEEEcCC---CHHHHHHHHHHHh
Q 045879 49 NLMHLVVYSKE---SVDKIQGLVENKF 72 (96)
Q Consensus 49 ~~~~l~v~G~~---~~~~l~~~v~~~f 72 (96)
..+++|+.|.+ +.+++.++|+.+=
T Consensus 24 ~G~~~v~TG~l~~~~R~e~~~~i~~~G 50 (112)
T 2ebu_A 24 EGLIFVITGVLESIERDEAKSLIERYG 50 (112)
T ss_dssp TTCEEEECSCCSSSCHHHHHHHHHHTT
T ss_pred CCCEEEEeeeCCCCCHHHHHHHHHHcC
Confidence 47999999998 5789999987653
No 48
>3tr4_A Inorganic pyrophosphatase; central intermediary metabolism, hydrolase; HET: MSE; 2.00A {Coxiella burnetii} SCOP: b.40.5.0
Probab=52.34 E-value=24 Score=23.20 Aligned_cols=44 Identities=9% Similarity=0.046 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhhcCCC-CcEEEEEcCCCHHHHHHHHHHHhhcccC
Q 045879 34 TRHELIKFYNEHYSSN-LMHLVVYSKESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~-~~~l~v~G~~~~~~l~~~v~~~f~~~~~ 77 (96)
.++++++||+.|=... +=.+.+.|=.+.+++.+.|++....|..
T Consensus 132 ~l~~i~~fF~~YK~le~gK~v~~~g~~~~~~A~~~I~~~~~~~~~ 176 (178)
T 3tr4_A 132 LLDAISHFFERYKDLEPNKWAKVKGWEDKEAAKKEFEASIVRFKE 176 (178)
T ss_dssp HHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCcCCCceeEeccCcCHHHHHHHHHHHHHHHHh
Confidence 7999999998766654 3446677888999999999888776654
No 49
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=51.81 E-value=14 Score=22.10 Aligned_cols=30 Identities=13% Similarity=0.199 Sum_probs=24.5
Q ss_pred CCCcEEEEEcC-CCHHHHHHHHHHHhhcccC
Q 045879 48 SNLMHLVVYSK-ESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 48 ~~~~~l~v~G~-~~~~~l~~~v~~~f~~~~~ 77 (96)
..|+.++|.|+ ++.+++++.++++=+.+.+
T Consensus 48 Te~lkitiEG~~id~d~I~~~IE~~Gg~IHS 78 (97)
T 2raq_A 48 TENIKVTIQGNDLDFDEITRAIESYGGSIHS 78 (97)
T ss_dssp CEEEEEEEECSSCCHHHHHHHHHHTTCEEEE
T ss_pred ccEEEEEEEecCCCHHHHHHHHHHcCCeEEe
Confidence 45789999998 9999999999877665544
No 50
>3ld3_A Inorganic pyrophosphatase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.75A {Anaplasma phagocytophilum} PDB: 3lo0_A
Probab=51.58 E-value=19 Score=24.15 Aligned_cols=45 Identities=7% Similarity=0.026 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhhcCCC-CcEEEEEcCCCHHHHHHHHHHHhhcccCC
Q 045879 34 TRHELIKFYNEHYSSN-LMHLVVYSKESVDKIQGLVENKFQDIRNT 78 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~-~~~l~v~G~~~~~~l~~~v~~~f~~~~~~ 78 (96)
.+++++.||+.|=... +=.+.+.|=.+.+++.+.|++....|..+
T Consensus 152 ~l~~I~~fF~~YK~le~gK~v~v~gw~~~~~A~~~I~~~~~~~~~~ 197 (199)
T 3ld3_A 152 FLDSISHFFSFYKKLEKDKFVSVGCWQDAASAKELIRSAIIAAKKG 197 (199)
T ss_dssp HHHHHHHHHHHTTTTSTTCCEEEEEEEEHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCcCCCceEEecCCCCHHHHHHHHHHHHHHHHhc
Confidence 7999999998766654 34567778889999999998887776654
No 51
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=50.87 E-value=45 Score=21.11 Aligned_cols=27 Identities=4% Similarity=0.064 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCHHHHHHHHHHHhhcc
Q 045879 49 NLMHLVVYSKESVDKIQGLVENKFQDI 75 (96)
Q Consensus 49 ~~~~l~v~G~~~~~~l~~~v~~~f~~~ 75 (96)
....++|-|+-+.+++.+.|.+.+..+
T Consensus 189 ~~~~~~id~~~~~~~v~~~i~~~l~~~ 215 (216)
T 3dl0_A 189 KGYLVNVNGQQDIQDVYADLKVLLGGL 215 (216)
T ss_dssp HTCEEEEECSSCHHHHHHHHHHHHGGG
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence 356888999999999999998887654
No 52
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=49.53 E-value=27 Score=22.00 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhhcCCC----CcEEEEEcCCCHHHHHHHHHHHhhc
Q 045879 34 TRHELIKFYNEHYSSN----LMHLVVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~----~~~l~v~G~~~~~~l~~~v~~~f~~ 74 (96)
..+.+.+|+..-..+. +=.++|.|.++.+++++++++|...
T Consensus 57 ~p~hv~ky~~~ELGt~g~id~~rlii~G~~~~~~i~~~L~~yI~~ 101 (138)
T 1nee_A 57 DPQHLLKFLLRELGTAGNLEGGRAILQGKFTHFLINERIEDYVNK 101 (138)
T ss_dssp SHHHHHHHHHHHCCSCCCCBTTTEEEESSCSSSHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHhCCceeecCCEEEEEeeeCHHHHHHHHHHHHhh
Confidence 4778889998777664 5579999999999999999998765
No 53
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=49.34 E-value=15 Score=21.86 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=23.7
Q ss_pred CCcEEEEEcC-CCHHHHHHHHHHHhhcccC
Q 045879 49 NLMHLVVYSK-ESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 49 ~~~~l~v~G~-~~~~~l~~~v~~~f~~~~~ 77 (96)
.|+.++|.|+ ++.+++++.++++=+.+.+
T Consensus 48 e~lkItIEG~~idfd~I~~~IE~~Gg~IHS 77 (96)
T 2x3d_A 48 MGLMIIIEGTSLNFDDIRKMLEEEGCAIHS 77 (96)
T ss_dssp EEEEEEEEESSCCHHHHHHHHHHTTCEEEE
T ss_pred cEEEEEEEecCCCHHHHHHHHHHcCCeEEe
Confidence 5788999998 9999999999876555544
No 54
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=47.06 E-value=44 Score=21.37 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=25.8
Q ss_pred HHHHHHHHHh------hcCCCCcEEEEEcCCCHHHHHHHHHHH
Q 045879 35 RHELIKFYNE------HYSSNLMHLVVYSKESVDKIQGLVENK 71 (96)
Q Consensus 35 ~~~l~~f~~~------~Y~~~~~~l~v~G~~~~~~l~~~v~~~ 71 (96)
++.+..|++. +|......+.|-|+.+.+++.+.|.+.
T Consensus 174 ~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~ 216 (217)
T 3be4_A 174 KVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKI 216 (217)
T ss_dssp HHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhh
Confidence 4556666554 465445678889999999998887654
No 55
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=46.84 E-value=34 Score=22.55 Aligned_cols=39 Identities=10% Similarity=0.289 Sum_probs=28.2
Q ss_pred HHHHHHHHHh------hcCCCCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 35 RHELIKFYNE------HYSSNLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 35 ~~~l~~f~~~------~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
+..|..|++. ||......+.|-|+-+.+++.+.|.+.+.
T Consensus 198 ~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 198 KKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242 (243)
T ss_dssp HHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence 4445555544 45555678899999999999999887764
No 56
>2l4w_A Uncharacterized protein; type IV secretion system, VIRB7, N0 domain, membrane protein xanthomonas, lipoprotein; NMR {Xanthomonas axonopodis PV}
Probab=46.35 E-value=24 Score=21.61 Aligned_cols=44 Identities=9% Similarity=0.113 Sum_probs=30.7
Q ss_pred CCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCC
Q 045879 9 DHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKE 59 (96)
Q Consensus 9 ~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~ 59 (96)
+|++..-..|-.+.|... ..++...=-.+-|.+..|+++|+|+.
T Consensus 63 ~~~~DyTLy~~vs~I~tt-------~~~qA~~ELs~iY~akgv~vsv~~~~ 106 (120)
T 2l4w_A 63 NLPSDYTLIGPVSAISTT-------SVQQAATELSAVYAAQGVSVSVSANK 106 (120)
T ss_dssp CCSSCCBCCSTTTTCCBS-------CHHHHHHHHHHHHGGGTEEEEECSSE
T ss_pred cCccceeeehhhhhhhhh-------hHHHHHHHHHHHHHhCCeEEEEECCE
Confidence 466666667777777765 44444444567888999999998873
No 57
>3ov5_A VIRB7 (XAC2622), uncharacterized protein; type IV secretion system component, bacteri membrane, xanthomonas axonopodis PV citri; 1.04A {Xanthomonas axonopodis PV}
Probab=45.33 E-value=26 Score=20.22 Aligned_cols=44 Identities=9% Similarity=0.113 Sum_probs=31.6
Q ss_pred CCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCC
Q 045879 9 DHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKE 59 (96)
Q Consensus 9 ~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~ 59 (96)
+|++..-..|-.+.|..- ..++...=-.+-|.+..|+++|+|+.
T Consensus 33 ~~~sDyTLy~~Vs~I~tt-------~~~~A~~eLs~~Y~aqgv~vsv~~n~ 76 (85)
T 3ov5_A 33 NLPSDYTLIGPVSAISTT-------SVQQAATELSAVYAAQGVSVSVSANK 76 (85)
T ss_dssp CSSSCCBCCGGGGGCEES-------CHHHHHHHHHHHHGGGTEEEEEETTE
T ss_pred cCccceeeehhhhhhhhh-------hHHHHHHHHHHHHHhCCeEEEEECCE
Confidence 466666667777777775 44555555567899999999999973
No 58
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=45.04 E-value=21 Score=21.55 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=19.6
Q ss_pred CCcEEEEEcCCC--HHHHHHHHHHHhh
Q 045879 49 NLMHLVVYSKES--VDKIQGLVENKFQ 73 (96)
Q Consensus 49 ~~~~l~v~G~~~--~~~l~~~v~~~f~ 73 (96)
.+|++|+.|.++ .+++.++|+.+=+
T Consensus 12 ~G~~~ViTG~l~~~R~e~k~~ie~~Gg 38 (113)
T 2cok_A 12 SNMKILTLGKLSRNKDEVKAMIEKLGG 38 (113)
T ss_dssp SSCEEEECSCCSSCHHHHHHHHHHTTC
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHCCC
Confidence 478999999985 6888888876533
No 59
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=44.26 E-value=26 Score=22.88 Aligned_cols=40 Identities=10% Similarity=0.218 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhcCCC------CcEEEEEcCCCHHHHHHHHHHHhhc
Q 045879 35 RHELIKFYNEHYSSN------LMHLVVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 35 ~~~l~~f~~~~Y~~~------~~~l~v~G~~~~~~l~~~v~~~f~~ 74 (96)
.+.+..|+..-..+. +=.++|.|.++.++++++++.|...
T Consensus 50 p~hv~kyf~~ELGt~g~id~~~~rliinG~~~~~~i~~~L~~yI~~ 95 (170)
T 2g2k_A 50 PTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKK 95 (170)
T ss_dssp CTTTHHHHHHHTTCCCEECTTTCCEEEEBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCceeecCCCCEEEEEeeeCHHHHHHHHHHHHHH
Confidence 455678888766554 6689999999999999999998765
No 60
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=43.89 E-value=12 Score=22.52 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=23.3
Q ss_pred CCcEEEEEcC-CCHHHHHHHHHHHhhcccC
Q 045879 49 NLMHLVVYSK-ESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 49 ~~~~l~v~G~-~~~~~l~~~v~~~f~~~~~ 77 (96)
.|+.|+|.|+ ++.+++++.++++=+.+.+
T Consensus 49 e~lkItIEG~dIdfd~I~~~IE~~GgvIHS 78 (100)
T 3bpd_A 49 ENIKITILGNNLDYEQIKGVIEDMGGVIHS 78 (100)
T ss_dssp EEEEEEEEEEEECHHHHHHHHHTTTCEEEE
T ss_pred cEEEEEEEecCCCHHHHHHHHHHcCCeEEe
Confidence 4788999998 9999999999876554443
No 61
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=43.87 E-value=45 Score=19.44 Aligned_cols=25 Identities=0% Similarity=-0.039 Sum_probs=19.3
Q ss_pred EEEEcCCCHHHHHHHHHHHhhcccC
Q 045879 53 LVVYSKESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 53 l~v~G~~~~~~l~~~v~~~f~~~~~ 77 (96)
+...|..+.+++.+++++..+..+.
T Consensus 106 ~~~~G~~~~~~l~~~l~~~~~~~~~ 130 (136)
T 2l5l_A 106 EMAQGAMPKASFKKAIDEFLLKKEG 130 (136)
T ss_dssp EEEESCCCHHHHHHHHHHHHTSCTT
T ss_pred EEEeCCCCHHHHHHHHHHHhhccCC
Confidence 3567888999999999888875443
No 62
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=43.36 E-value=60 Score=23.28 Aligned_cols=56 Identities=13% Similarity=0.041 Sum_probs=37.4
Q ss_pred CCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCc-EEEEEcCCCHHHHHHHHHHH
Q 045879 16 STGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLM-HLVVYSKESVDKIQGLVENK 71 (96)
Q Consensus 16 ~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~-~l~v~G~~~~~~l~~~v~~~ 71 (96)
..||.+.++.+...+-+.++++..++|++.-.+..+ +|+++|..+.++..++++.-
T Consensus 211 ~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~~~P~v~lsgG~~~~~fl~~v~~A 267 (332)
T 3iv3_A 211 VPVNMVYVEGFAEGEVVYSKEEAAQAFREQEASTDLPYIYLSAGVSAELFQETLVFA 267 (332)
T ss_dssp CSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTCSSCEEEECTTCCHHHHHHHHHHH
T ss_pred cCCChhhhcccccccccccHHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHHH
Confidence 456665555554444556888888877776555544 46679889878888777543
No 63
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=43.22 E-value=19 Score=20.32 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=19.2
Q ss_pred EEEEcCCCH------HHHHHHHHHHhhccc
Q 045879 53 LVVYSKESV------DKIQGLVENKFQDIR 76 (96)
Q Consensus 53 l~v~G~~~~------~~l~~~v~~~f~~~~ 76 (96)
.+.+|+++. +..++.+.++|+.+.
T Consensus 8 ~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G 37 (100)
T 3ns6_A 8 YIVVNGAPVIPSAKVPVLKKALTSLFSKAG 37 (100)
T ss_dssp EEEEESCCCCBGGGHHHHHHHHHHHHHTTS
T ss_pred EEEEeCCCcCChHHHHHHHHHHHHHHHhcC
Confidence 467788998 888888999998653
No 64
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=43.01 E-value=48 Score=21.56 Aligned_cols=39 Identities=10% Similarity=0.189 Sum_probs=29.4
Q ss_pred HHHHHHHHHh------hcCCCCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 35 RHELIKFYNE------HYSSNLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 35 ~~~l~~f~~~------~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
+..|..|+++ ||...+....|-|+-+.+++.+.|.+.++
T Consensus 159 ~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~ 203 (206)
T 3sr0_A 159 KKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG 203 (206)
T ss_dssp HHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence 3445555543 56667788899999999999998888775
No 65
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=42.72 E-value=29 Score=22.20 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=26.3
Q ss_pred HHHHHHHHh------hcCCCCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 36 HELIKFYNE------HYSSNLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 36 ~~l~~f~~~------~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
+.+..|++. +|......+.|-|+.+.+++.+.|.+.+.
T Consensus 175 ~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 218 (220)
T 1aky_A 175 KRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218 (220)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 445555544 55433457788899999999988887764
No 66
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=42.09 E-value=55 Score=21.62 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=24.7
Q ss_pred hcCCCCcEEEEEcCCCHHHHHHHHHHHhhc
Q 045879 45 HYSSNLMHLVVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 45 ~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~ 74 (96)
||...+..+.|-|+-+.+++.+.|.+.+..
T Consensus 184 ~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k 213 (217)
T 3umf_A 184 HYKQQNKVITIDASGTVDAIFDKVNHELQK 213 (217)
T ss_dssp HHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred HHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 566677889999999999998888877753
No 67
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=40.97 E-value=39 Score=21.37 Aligned_cols=31 Identities=10% Similarity=0.148 Sum_probs=24.6
Q ss_pred hcCCCCcEEEEEcCCCHHHHHHHHHHHhhcc
Q 045879 45 HYSSNLMHLVVYSKESVDKIQGLVENKFQDI 75 (96)
Q Consensus 45 ~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~ 75 (96)
+|......++|-|+-+.+++.+.|.+.+..+
T Consensus 185 ~~~~~~~~~~id~~~~~~~v~~~i~~~l~~~ 215 (216)
T 3fb4_A 185 FYSQKGVLKDIDGQQDIKKVFVDINDLLGGL 215 (216)
T ss_dssp HHHHTTCEEEEECSSCHHHHHHHHHHHHHTC
T ss_pred HHHcCCcEEEEECCCCHHHHHHHHHHHHHhc
Confidence 4444567889999999999999998887654
No 68
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=40.25 E-value=14 Score=25.66 Aligned_cols=29 Identities=7% Similarity=0.074 Sum_probs=20.7
Q ss_pred hhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcC
Q 045879 21 ETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSK 58 (96)
Q Consensus 21 ~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~ 58 (96)
+.|.++ +.+|++++.++ |.++++. +|+|+
T Consensus 393 ~~i~~v-------t~edv~~~a~~-~~~~~~~-~v~g~ 421 (425)
T 3d3y_A 393 ARINAV-------TIPEIQEVAKR-LELQAIF-FLEGE 421 (425)
T ss_dssp HHHHHC-------CHHHHHHHHHH-CEEEEEE-EEEEE
T ss_pred HHHHhC-------CHHHHHHHHHh-ccCceEE-EEeCC
Confidence 456665 89999999988 5676555 55554
No 69
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=40.20 E-value=30 Score=24.53 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHH
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVE 69 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~ 69 (96)
+.++|++--+.- ..++.|.++|+++++.+.++++
T Consensus 239 ~~~~l~~av~~i--~~~v~ieaSGGI~~~~i~~~a~ 272 (298)
T 3gnn_A 239 TLDMMRDAVRVT--EGRAVLEVSGGVNFDTVRAIAE 272 (298)
T ss_dssp CHHHHHHHHHHH--TTSEEEEEESSCSTTTHHHHHH
T ss_pred CHHHHHHHHHHh--CCCCeEEEEcCCCHHHHHHHHH
Confidence 445555554433 3577788888888777777665
No 70
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A {Thermococcus thioreducens} SCOP: b.40.5.1 PDB: 3r6e_A* 3q3l_A 3i98_A 3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A
Probab=39.82 E-value=21 Score=23.47 Aligned_cols=43 Identities=5% Similarity=0.010 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhccc
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIR 76 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~ 76 (96)
.++++++||+.|=.++.=.+-+.|=.+.+++.+.|++....|.
T Consensus 129 ~l~~i~~fF~~YK~legK~v~~~g~~~~~~A~~~I~~~~~~~~ 171 (178)
T 3q46_A 129 FLDEIAHFFQRYKELQGKTTKIEGWGNAEEAKREILRAIEMYK 171 (178)
T ss_dssp HHHHHHHHHHHTTGGGTCCEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcCCCceEeccccCHHHHHHHHHHHHHHHH
Confidence 7999999998777776666677788888888888887766654
No 71
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=38.98 E-value=37 Score=22.01 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=28.1
Q ss_pred HHHHHHHHHh------hcCCCCcEEEEEcCCCHHHHHHHHHHHhhcc
Q 045879 35 RHELIKFYNE------HYSSNLMHLVVYSKESVDKIQGLVENKFQDI 75 (96)
Q Consensus 35 ~~~l~~f~~~------~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~ 75 (96)
.+.+..|++. +|...+..+.|-|+.+.+++.+.|.+.+..+
T Consensus 185 ~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~~ 231 (233)
T 1ak2_A 185 KIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKA 231 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence 3345555542 5654456788899999999999888877543
No 72
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.72 E-value=14 Score=18.11 Aligned_cols=12 Identities=17% Similarity=0.393 Sum_probs=9.4
Q ss_pred hHHHHHHHHHhh
Q 045879 34 TRHELIKFYNEH 45 (96)
Q Consensus 34 ~~~~l~~f~~~~ 45 (96)
...++++||++|
T Consensus 18 rlk~Ike~Hrr~ 29 (38)
T 2dt7_A 18 RLKQIKEFHRKH 29 (38)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHHhC
Confidence 467889999875
No 73
>1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=38.44 E-value=8.3 Score=23.64 Aligned_cols=40 Identities=5% Similarity=0.053 Sum_probs=25.4
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
+..+|+++|+.++.+.-+.=+-.|.++.++.......+|.
T Consensus 23 s~~elk~~y~~F~~g~~~k~cp~G~i~~e~F~~i~~~ffp 62 (118)
T 1tuz_A 23 STKKVSDVLKLFEDGEMAKYVQGDAIGYEGFQQFLKIYLE 62 (118)
T ss_dssp CCCCHHHHHHHHHTSGGGGGEETTEECHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHccccccccCCCCCCCHHHHHHHHHHhCc
Confidence 4457888888884110022344578888888888777773
No 74
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=38.29 E-value=61 Score=19.04 Aligned_cols=38 Identities=11% Similarity=0.115 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccC
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~ 77 (96)
..+.|+.|.+.|-.. +--+.+-++|...|.++|...+-
T Consensus 28 ~~~tLrrY~r~y~L~------~~~~~sK~qLa~aV~kHF~s~~V 65 (94)
T 2ld7_A 28 QVNTLRRYKRHFKLP------TRPGLNKAQLVEIVGCHFKSIPV 65 (94)
T ss_dssp CHHHHHHHHHHTTCC------CCSSCCHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHhCCC------CCCCCCHHHHHHHHHHHHHcCCC
Confidence 678888887665432 22267899999999999986553
No 75
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=38.08 E-value=50 Score=20.34 Aligned_cols=41 Identities=27% Similarity=0.326 Sum_probs=27.7
Q ss_pred HHHHHHHHh---hcCCCCcEEEEEcCCCHHHHHHHHHHHhhccc
Q 045879 36 HELIKFYNE---HYSSNLMHLVVYSKESVDKIQGLVENKFQDIR 76 (96)
Q Consensus 36 ~~l~~f~~~---~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~ 76 (96)
+.+...|.. .|......++|-++-+.+++.+.|.+.+..+.
T Consensus 159 ~~l~~~~~~~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~~~ 202 (205)
T 2jaq_A 159 ETLNKNYEEFYKQNVYDFPFFVVDAELDVKTQIELIMNKLNSIK 202 (205)
T ss_dssp HHHHHHHHHHHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHccccCcEEEEECCCCHHHHHHHHHHHHHHhc
Confidence 445566654 34424567788887799999999888876554
No 76
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=37.60 E-value=26 Score=20.21 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=19.0
Q ss_pred CCcEEEEEcCCC--HHHHHHHHHHHh
Q 045879 49 NLMHLVVYSKES--VDKIQGLVENKF 72 (96)
Q Consensus 49 ~~~~l~v~G~~~--~~~l~~~v~~~f 72 (96)
..+++|+.|.++ .+++.++|+.+=
T Consensus 9 ~G~~~v~TG~l~~~R~e~~~~i~~~G 34 (92)
T 1l7b_A 9 KGLTFVITGELSRPREEVKALLRRLG 34 (92)
T ss_dssp TTCEEECSTTTTSCHHHHHHHHHHTT
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHcC
Confidence 368999999984 788888887653
No 77
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=37.55 E-value=44 Score=23.90 Aligned_cols=34 Identities=9% Similarity=0.039 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHH
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVE 69 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~ 69 (96)
+.++|++--+. ...++.|.++|+++++.+.++++
T Consensus 261 ~~~~l~~av~~--l~~~v~ieaSGGIt~~~I~~~a~ 294 (320)
T 3paj_A 261 SLEMMREAVKI--NAGRAALENSGNITLDNLKECAE 294 (320)
T ss_dssp CHHHHHHHHHH--HTTSSEEEEESSCCHHHHHHHHT
T ss_pred CHHHHHHHHHH--hCCCCeEEEECCCCHHHHHHHHH
Confidence 45566555543 23689999999999998888775
No 78
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=36.68 E-value=35 Score=21.76 Aligned_cols=28 Identities=14% Similarity=0.136 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCHHHHHHHHHHHhhcccC
Q 045879 50 LMHLVVYSKESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 50 ~~~l~v~G~~~~~~l~~~v~~~f~~~~~ 77 (96)
++.|+.+|+....-+.+.+++|...++.
T Consensus 2 ki~ii~VGk~k~~~~~~~i~eY~kRl~~ 29 (155)
T 1ns5_A 2 KLQLVAVGTKMPDWVQTGFTEYLRRFPK 29 (155)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHTTSCT
T ss_pred eEEEEEEeccCcHHHHHHHHHHHHHcCc
Confidence 5789999999877888999999887765
No 79
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=36.28 E-value=46 Score=21.35 Aligned_cols=30 Identities=17% Similarity=0.035 Sum_probs=22.5
Q ss_pred hcCCCCcEEEEEcCCCHHHHHHHHHHHhhcc
Q 045879 45 HYSSNLMHLVVYSKESVDKIQGLVENKFQDI 75 (96)
Q Consensus 45 ~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~ 75 (96)
+|......+.|-|. +.+++.+.|.+.+...
T Consensus 186 ~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~ 215 (227)
T 1zd8_A 186 YYQKKGVLETFSGT-ETNKIWPYVYAFLQTK 215 (227)
T ss_dssp HHHHHTCEEEEECS-SHHHHHHHHHHHHTTT
T ss_pred HHHccCCEEEEeCC-CHHHHHHHHHHHHHhh
Confidence 45433567888888 9999999998888653
No 80
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=36.09 E-value=61 Score=22.71 Aligned_cols=35 Identities=9% Similarity=0.147 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHH
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVEN 70 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~ 70 (96)
+.++|+..-+ ...+++.|.++|+++.+.+.++++.
T Consensus 238 ~~e~l~~~v~--~~~~~~~I~ASGGIt~~~i~~~a~~ 272 (296)
T 1qap_A 238 NTDQMREAVK--RVNGQARLEVSGNVTAETLREFAET 272 (296)
T ss_dssp CHHHHHHHHH--TTCTTCCEEECCCSCHHHHHHHHHT
T ss_pred CHHHHHHHHH--HhCCCCeEEEECCCCHHHHHHHHHc
Confidence 5677777654 3456899999999999988888764
No 81
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=35.77 E-value=30 Score=22.32 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCHHHHHHHHHHHhhcccC
Q 045879 50 LMHLVVYSKESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 50 ~~~l~v~G~~~~~~l~~~v~~~f~~~~~ 77 (96)
++.|+.+|+.. .-+.+.+++|...++.
T Consensus 4 ki~IiaVGk~k-~~~~~~i~eY~kRl~~ 30 (163)
T 1o6d_A 4 RVRIAVIGKLD-GFIKEGIKHYEKFLRR 30 (163)
T ss_dssp EEEEEEESCCC-HHHHHHHHHHHHHHTT
T ss_pred EEEEEEecCcc-HHHHHHHHHHHHHcCc
Confidence 57889999999 8888888888877655
No 82
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=35.49 E-value=36 Score=18.65 Aligned_cols=21 Identities=5% Similarity=0.151 Sum_probs=16.4
Q ss_pred EEEEcCCCHHHHHHHHHHHhh
Q 045879 53 LVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 53 l~v~G~~~~~~l~~~v~~~f~ 73 (96)
-...|..+.+++.++++++++
T Consensus 90 ~~~~g~~~~~~l~~~l~~~l~ 110 (111)
T 3gnj_A 90 GKMAGDVEDDEVEQMIADVLE 110 (111)
T ss_dssp EEEESSCCHHHHHHHHHHHHH
T ss_pred EEEeccCCHHHHHHHHHHHhc
Confidence 346788888899998888765
No 83
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=34.02 E-value=39 Score=21.82 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=19.0
Q ss_pred CCcEEEEEcCCCHHHHHHHHHHHh
Q 045879 49 NLMHLVVYSKESVDKIQGLVENKF 72 (96)
Q Consensus 49 ~~~~l~v~G~~~~~~l~~~v~~~f 72 (96)
.+..+.|-|+.+.+++.+.|.+.+
T Consensus 199 ~~~~~~ida~~~~~~v~~~i~~~l 222 (223)
T 2xb4_A 199 GFVYIELDGEGSIDSIKDTLLAQL 222 (223)
T ss_dssp TCEEEEEETTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCHHHHHHHHHHHh
Confidence 355778889999999998887654
No 84
>2kw7_A Conserved domain protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Porphyromonas gingivalis}
Probab=33.98 E-value=40 Score=20.96 Aligned_cols=42 Identities=5% Similarity=-0.048 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCC
Q 045879 35 RHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNT 78 (96)
Q Consensus 35 ~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~ 78 (96)
.+.|.++-++ ....++++++..++-..++++..++|..|.-+
T Consensus 37 ~~~l~~~e~~--t~~qi~Vv~v~~l~g~~~~~~A~~~f~~wgig 78 (157)
T 2kw7_A 37 NGRLRAIRSS--HAVEFAVVTLPSIGDAPLEDFTLKLARQWGVG 78 (157)
T ss_dssp HHHHHHHHHH--TCCEEEEEEESBCTTCCHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHh--hCCeEEEEEEcCCCCCCHHHHHHHHHHHhCCC
Confidence 4556666655 34578888888887667888999999888543
No 85
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural protein, Z-DISK structural complex; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=32.83 E-value=47 Score=18.21 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=16.1
Q ss_pred ccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHH
Q 045879 28 KAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVEN 70 (96)
Q Consensus 28 ~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~ 70 (96)
+.+|.++.++|+. .++.+++..++..
T Consensus 21 dg~G~It~~eLr~-----------------~lt~eevd~~i~~ 46 (75)
T 1h8b_A 21 SDKPYILAEELRR-----------------ELPPDQAQYCIKR 46 (75)
T ss_dssp TSCSSBCHHHHHH-----------------HSCHHHHHHHHHH
T ss_pred cCCCCcCHHHHHh-----------------cCCHHHHHHHHHh
Confidence 4456566666666 3676677666654
No 86
>3k3v_A Protein SMY2; GYF domain, poly-proline binding, domain SWAP, ragnya, phosphoprotein, protein binding; 1.80A {Saccharomyces cerevisiae} PDB: 3fma_A
Probab=32.15 E-value=67 Score=19.08 Aligned_cols=37 Identities=11% Similarity=0.246 Sum_probs=29.0
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcC-----------CCHHHHHHHHHH
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSK-----------ESVDKIQGLVEN 70 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~-----------~~~~~l~~~v~~ 70 (96)
+.++|.+||+.-|-+..+.|.-++. +++.++...+..
T Consensus 32 s~~~M~~W~~~GYF~~~L~VrR~~~~~~p~g~d~~F~~Lgel~~~~g~ 79 (100)
T 3k3v_A 32 TTQMMSQWYIGGYFASTLQISRLGSTPETLGINDIFITLGELMTKLEK 79 (100)
T ss_dssp EHHHHHHHHHTTCCCTTCEEEECCSSCCSSSCBTCCEEHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCCCCceEEEcCCCCCccCCCCceeeHHHHHHHhCC
Confidence 7899999999999999999988753 346666665543
No 87
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=32.13 E-value=81 Score=20.24 Aligned_cols=38 Identities=11% Similarity=-0.089 Sum_probs=27.8
Q ss_pred chHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHh
Q 045879 33 DTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKF 72 (96)
Q Consensus 33 ~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f 72 (96)
...+-|+..+++ | .+++.|+++|..|---+..++.+..
T Consensus 31 ~~~~~l~~~~~~-~-~~~v~Va~SGGkDS~vLL~ll~~~~ 68 (215)
T 1sur_A 31 DAEGRVAWALDN-L-PGEYVLSSSFGIQAAVSLHLVNQIR 68 (215)
T ss_dssp CHHHHHHHHHHH-C-CSEEEEECCCCTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHH-c-CCCEEEEecCCHHHHHHHHHHHHhC
Confidence 356666666665 4 5689999999999777777776653
No 88
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=32.09 E-value=16 Score=22.24 Aligned_cols=12 Identities=25% Similarity=0.094 Sum_probs=7.3
Q ss_pred hHHHHHHHHHhh
Q 045879 34 TRHELIKFYNEH 45 (96)
Q Consensus 34 ~~~~l~~f~~~~ 45 (96)
+.++|++.|.+|
T Consensus 38 t~~~L~~~Fs~y 49 (124)
T 2e5i_A 38 TVDVLYTVCNPV 49 (124)
T ss_dssp CHHHHHHHHTTT
T ss_pred CHHHHHHHHHhc
Confidence 566666666554
No 89
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=32.02 E-value=50 Score=22.05 Aligned_cols=39 Identities=10% Similarity=0.156 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
..+.+.+|-+++ ....++|.++|.+|-.-+..++.+.++
T Consensus 9 ~~~~l~~~i~~~-~~~~vvv~lSGGiDSs~~~~l~~~~~g 47 (257)
T 2e18_A 9 VIERILEFIREK-GNNGVVIGISGGVDSATVAYLATKALG 47 (257)
T ss_dssp HHHHHHHHHHHH-CTTCEEEECCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh-CCCcEEEEecCCHHHHHHHHHHHHhcC
Confidence 356778888776 778899999999997666666766663
No 90
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=31.08 E-value=36 Score=22.98 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=15.8
Q ss_pred HHHHHHHHHh-------hcCCCCcEEEEEcCCCHHHHHHHHHHHh
Q 045879 35 RHELIKFYNE-------HYSSNLMHLVVYSKESVDKIQGLVENKF 72 (96)
Q Consensus 35 ~~~l~~f~~~-------~Y~~~~~~l~v~G~~~~~~l~~~v~~~f 72 (96)
-+-|.+||++ ++...+..+.|-|.-+.+++.+.|.+.+
T Consensus 183 t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l 227 (230)
T 3gmt_A 183 TKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQ 227 (230)
T ss_dssp HHHHHHHHHHHHHHCCBTTBCCCEEEEECC---------------
T ss_pred HHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHH
Confidence 3456677775 3455578899999999999888776554
No 91
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=30.70 E-value=96 Score=19.08 Aligned_cols=39 Identities=10% Similarity=0.183 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhc
Q 045879 35 RHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 35 ~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~ 74 (96)
.+.+...|.+..... ..++|-++-+.+++.+.|.+.+..
T Consensus 169 ~~r~~~~~~~~~~~~-~~~~Id~~~~~e~v~~~I~~~l~~ 207 (213)
T 2plr_A 169 QGLITEVYDKLVKDE-NFIVIDGTKTPKEIQIQIRKFVGE 207 (213)
T ss_dssp HHHHHHHHHHHTTTT-TCEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-CEEEEECCCCHHHHHHHHHHHHHH
Confidence 445566676655433 567888888999988888777654
No 92
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=30.18 E-value=32 Score=22.26 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCHHHHHHHHHHHhhcccC
Q 045879 50 LMHLVVYSKESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 50 ~~~l~v~G~~~~~~l~~~v~~~f~~~~~ 77 (96)
++.|+.+|+....-+.+.+++|...++.
T Consensus 2 ki~Ii~VGk~k~~~~~~~i~eY~kRl~~ 29 (167)
T 1to0_A 2 NINIVTIGKLKEKYLKQGIEEYTKRLSA 29 (167)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHHHHTT
T ss_pred eEEEEEEcccCcHHHHHHHHHHHHHcCc
Confidence 4678899998877788888888776654
No 93
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=29.37 E-value=60 Score=17.67 Aligned_cols=23 Identities=4% Similarity=0.033 Sum_probs=16.5
Q ss_pred CCcEEEEEc--CCCHHHHHHHHHHH
Q 045879 49 NLMHLVVYS--KESVDKIQGLVENK 71 (96)
Q Consensus 49 ~~~~l~v~G--~~~~~~l~~~v~~~ 71 (96)
.++++++.| .-+.+++.++|+.+
T Consensus 9 ~g~~~~i~g~~~~~~~~l~~~i~~~ 33 (92)
T 4id3_A 9 KNCVIYINGYTKPGRLQLHEMIVLH 33 (92)
T ss_dssp TTCEEEECSCCSSCHHHHHHHHHHT
T ss_pred CCEEEEEeCCCCcCHHHHHHHHHHC
Confidence 378999998 34667787777654
No 94
>1j6w_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.10A {Haemophilus influenzae} SCOP: d.185.1.2 PDB: 1joe_A
Probab=28.60 E-value=50 Score=21.69 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=35.8
Q ss_pred CcchHHHHHHHHHhhcCCC---------------CcEEEEEcCCCHHHHHHHHHHHhhcccC
Q 045879 31 GLDTRHELIKFYNEHYSSN---------------LMHLVVYSKESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 31 ~~~~~~~l~~f~~~~Y~~~---------------~~~l~v~G~~~~~~l~~~v~~~f~~~~~ 77 (96)
++-|.|.|.+=|-|..... -..+++.|+.+.+++.+++++.|..+-.
T Consensus 52 ~iHTlEHL~A~~lRnh~~~~~~~iId~sPMGCrTGFYlil~G~~~~~~v~~~~~~~l~~Il~ 113 (175)
T 1j6w_A 52 GIHTLEHLFAGFMRDHLNGDSIEIIDISPMGCRTGFYMSLIGTPNEQKVSEAWLASMQDVLG 113 (175)
T ss_dssp HHHHHHHHHHHHHHHHHCBTTBEEEEEEECTTSSEEEEEEESCCCHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHhhCccCCCCeEEEeCCcCcccccEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 4457787777666665543 3568899999999999999998888753
No 95
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=27.72 E-value=37 Score=21.85 Aligned_cols=27 Identities=4% Similarity=0.012 Sum_probs=21.3
Q ss_pred cEEEEEcCCCHHHHHHHHHHHhhcccC
Q 045879 51 MHLVVYSKESVDKIQGLVENKFQDIRN 77 (96)
Q Consensus 51 ~~l~v~G~~~~~~l~~~v~~~f~~~~~ 77 (96)
+.|+.+|+....-+.+.+++|...++.
T Consensus 7 i~ii~VGk~k~~~~~~~i~eY~kRl~~ 33 (163)
T 4fak_A 7 ITILAVGKLKEKYWKQAIAEYEKRLGP 33 (163)
T ss_dssp EEEEEESCCCCHHHHHHHHHHHHHHTT
T ss_pred EEEEEecCcCcHHHHHHHHHHHHHccC
Confidence 467889998877888888888876653
No 96
>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A*
Probab=27.40 E-value=1.4e+02 Score=21.09 Aligned_cols=48 Identities=0% Similarity=-0.094 Sum_probs=33.9
Q ss_pred CCcchHHHHHHHHH-------hhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCCCCC
Q 045879 30 KGLDTRHELIKFYN-------EHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDRNL 82 (96)
Q Consensus 30 ~~~~~~~~l~~f~~-------~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~ 82 (96)
-||-+.++..+|.+ +|..|+...|-.++ .+.+-+...+..|.+...++
T Consensus 239 GGIrt~e~A~~~i~~~~elG~~wl~~~~fRiGaSs-----~ll~el~~~~~~~~~~~~~~ 293 (297)
T 4eiv_A 239 GDVHMAETADFLMQMIFENGPRSIVRDKFRVGGGF-----NLLKELRDCYESWDSVGVSP 293 (297)
T ss_dssp TTCCHHHHHHHHHHHHHHHCGGGCSTTTEEEEECH-----HHHHHHHHHHHTSCCC----
T ss_pred CCCCCHHHHHHHHHHHHHhCccccCCCceEecccH-----HHHHHHHHHHhhhcccCCCC
Confidence 36678899999988 78889998988888 34444566777787766553
No 97
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=27.08 E-value=1.4e+02 Score=19.62 Aligned_cols=41 Identities=5% Similarity=0.190 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhhc------CCCCcEEEEEcCCCHHHHHHHHHHHhhc
Q 045879 34 TRHELIKFYNEHY------SSNLMHLVVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 34 ~~~~l~~f~~~~Y------~~~~~~l~v~G~~~~~~l~~~v~~~f~~ 74 (96)
-.+.+++.|.+.. .|.++.++=+|+.+.+++.+.|.+....
T Consensus 156 f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~ 202 (216)
T 3tmk_A 156 FQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEP 202 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4566666666653 5566544433899999888887666554
No 98
>2ikb_A Hypothetical protein NMB1012; structural genomics, PSI-2, MCSG, PR structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.2.1.9 PDB: 2is5_A*
Probab=26.96 E-value=35 Score=21.99 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=16.5
Q ss_pred hhccccccCCcchHHHHHHHHHhhc-CCCCc
Q 045879 22 TLEVRPKAKGLDTRHELIKFYNEHY-SSNLM 51 (96)
Q Consensus 22 tl~~~~~~~~~~~~~~l~~f~~~~Y-~~~~~ 51 (96)
+++.+ ++++..++|+++| .+-++
T Consensus 47 dv~~L-------t~~~a~~IY~~~YW~~~~~ 70 (167)
T 2ikb_A 47 SMRAM-------TREQAISIYRKAFWERYRA 70 (167)
T ss_dssp CGGGC-------CHHHHHHHHHHHTTTTTTG
T ss_pred hhhhc-------CHHHHHHHHHHHhcccccc
Confidence 56666 8999999998554 55444
No 99
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=26.49 E-value=62 Score=18.69 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=13.8
Q ss_pred EEEcCCCHHHHHHHHHHHhh
Q 045879 54 VVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 54 ~v~G~~~~~~l~~~v~~~f~ 73 (96)
...|..+.+++.++|++++.
T Consensus 120 ~~~G~~~~~~l~~~l~~~l~ 139 (141)
T 3hxs_A 120 VNMGALSKEQLKGYIDKVLL 139 (141)
T ss_dssp EEESCCCHHHHHHHHHHTTC
T ss_pred EEeCCCCHHHHHHHHHHHHc
Confidence 56677777777777776653
No 100
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=26.16 E-value=74 Score=18.35 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=26.5
Q ss_pred hhcCCCCcEEEEEcCCCHHHHHHHHHHHhhc
Q 045879 44 EHYSSNLMHLVVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 44 ~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~ 74 (96)
-+|..+-+++.+--+++.++|.+.+...|.-
T Consensus 11 ~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~ 41 (89)
T 1vd2_A 11 AYYRGDIMITHFEPSISFEGLCNEVRDMCSF 41 (89)
T ss_dssp EESSSCEEEEEECTTCCHHHHHHHHHHHTTC
T ss_pred EEeCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3677788888888899999999999999974
No 101
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=25.80 E-value=73 Score=16.81 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=15.7
Q ss_pred EEEEcCCCHHHHHHHHHHHhh
Q 045879 53 LVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 53 l~v~G~~~~~~l~~~v~~~f~ 73 (96)
-...|..+.+++.++++++.+
T Consensus 83 ~~~~g~~~~~~l~~~l~~~l~ 103 (104)
T 2e0q_A 83 DEIIGAVPREEIEIRIKNLLG 103 (104)
T ss_dssp EEEESCCCHHHHHHHHHHHHT
T ss_pred hhccCCCCHHHHHHHHHHHhc
Confidence 345677888888888887764
No 102
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.44 E-value=26 Score=19.02 Aligned_cols=11 Identities=36% Similarity=0.739 Sum_probs=6.7
Q ss_pred hHHHHHHHHHh
Q 045879 34 TRHELIKFYNE 44 (96)
Q Consensus 34 ~~~~l~~f~~~ 44 (96)
+.++|+++|.+
T Consensus 18 te~~l~~~F~~ 28 (88)
T 1wf0_A 18 TEDELREFFSQ 28 (88)
T ss_dssp CHHHHHHHSTT
T ss_pred CHHHHHHHHHH
Confidence 56666666653
No 103
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=25.35 E-value=1.5e+02 Score=19.68 Aligned_cols=37 Identities=8% Similarity=-0.131 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHh
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKF 72 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f 72 (96)
..+-|+..++ .| ++++.|+++|..|---+..++.+..
T Consensus 33 ~~~~l~~a~~-~~-~~~v~va~SGG~DS~vLL~ll~~~~ 69 (252)
T 2o8v_A 33 AEGRVAWALD-NL-PGEYVLSSSFGIQAAVSLHLVNQIR 69 (252)
T ss_dssp HHHHHHHHHT-TS-CSCEEEECCCSTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHH-Hc-CCCEEEEeCCCHHHHHHHHHHHHhC
Confidence 4444444444 45 5789999999999667777776664
No 104
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=25.26 E-value=25 Score=21.66 Aligned_cols=28 Identities=4% Similarity=0.025 Sum_probs=14.3
Q ss_pred CCCCcEEEEEcCCCHHHHHHHHHHHhhc
Q 045879 47 SSNLMHLVVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 47 ~~~~~~l~v~G~~~~~~l~~~v~~~f~~ 74 (96)
.|+++..+.+||++..--++.+.++|+.
T Consensus 24 ~ps~VL~I~V~NL~~~vte~~L~~lFs~ 51 (130)
T 3zzy_A 24 GQSPVLRIIVENLFYPVTLDVLHQIFSK 51 (130)
T ss_dssp -CCSEEEEEEESCCSCCCHHHHHHHHTT
T ss_pred CCCceEEEEECCCCCCCCHHHHHHHHhC
Confidence 3566677777765433333334445543
No 105
>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide, alternative splicing, FAD, flavoprotein, glycoprotein, GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo sapiens} PDB: 3lli_A*
Probab=25.16 E-value=27 Score=24.26 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=18.3
Q ss_pred hHHHHHHHHHhhcCCCCcEE
Q 045879 34 TRHELIKFYNEHYSSNLMHL 53 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l 53 (96)
..+++..|-+++|+++|+++
T Consensus 238 ~~~~Vl~fLk~~y~~~nl~~ 257 (261)
T 3llk_A 238 DVEATLNFLKAHFSPSNIIL 257 (261)
T ss_dssp CHHHHHHHHHHHTSGGGEEC
T ss_pred CHHHHHHHHHHHcCcccccc
Confidence 68999999999999999875
No 106
>1wh2_A Hypothetical protein AT5G08430; GYF domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} SCOP: d.76.1.1
Probab=25.10 E-value=49 Score=18.61 Aligned_cols=25 Identities=8% Similarity=0.201 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcC
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSK 58 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~ 58 (96)
+.++|++||+.-|-+..+.|.-+|.
T Consensus 34 s~~~M~~W~~~GyF~~~L~Vrr~~~ 58 (78)
T 1wh2_A 34 SLTQLKAWSDAEYFTKQFRVWMTGE 58 (78)
T ss_dssp CHHHHHHHHTTTSSCSCCEEEETTS
T ss_pred CHHHHHHHHHcCCCCCCceEEEeCC
Confidence 7899999999999999999999984
No 107
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=24.78 E-value=67 Score=22.28 Aligned_cols=39 Identities=8% Similarity=0.014 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 35 RHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 35 ~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
.+++.++-+++...+++.++++|.+|---+..++.+.++
T Consensus 7 ~~~~~~~ir~~v~~~kvlvalSGGvDSsvla~ll~~~~g 45 (308)
T 2dpl_A 7 VEEKVREIRETVGDSKAIIALSGGVDSSTAAVLAHKAIG 45 (308)
T ss_dssp HHHHHHHHHHHHTTSCEEEECCSSHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhCCCCEEEEEeChHHHHHHHHHHHHhhC
Confidence 344555666666678999999999996666666666544
No 108
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=24.58 E-value=73 Score=17.23 Aligned_cols=19 Identities=5% Similarity=0.160 Sum_probs=14.4
Q ss_pred EEEcCCCHHHHHHHHHHHh
Q 045879 54 VVYSKESVDKIQGLVENKF 72 (96)
Q Consensus 54 ~v~G~~~~~~l~~~v~~~f 72 (96)
...|..+.+++.+++++.+
T Consensus 89 ~~~G~~~~~~l~~~l~~~l 107 (108)
T 2trx_A 89 TKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp EEESCCCHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHhh
Confidence 3577788888888887765
No 109
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=24.48 E-value=54 Score=18.79 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=17.2
Q ss_pred CCcEEEEEcCCC--HHHHHHHHHHH
Q 045879 49 NLMHLVVYSKES--VDKIQGLVENK 71 (96)
Q Consensus 49 ~~~~l~v~G~~~--~~~l~~~v~~~ 71 (96)
.++++++.|.++ .+++.++|+++
T Consensus 17 ~g~~i~isg~~~~~r~~l~~li~~~ 41 (107)
T 3l3e_A 17 HKVVVCVSKKLSKKQSELNGIAASL 41 (107)
T ss_dssp TTCEEEECGGGGGGHHHHHHHHHHT
T ss_pred CCeEEEEeCCChHhHHHHHHHHHHc
Confidence 478999999875 56777777654
No 110
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=24.41 E-value=72 Score=19.48 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=20.1
Q ss_pred cCCCCcEEEEEcCCCHHHHHHHHHHHhhc
Q 045879 46 YSSNLMHLVVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 46 Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~ 74 (96)
|.....+++|-++.+.+++.+.|.+.+..
T Consensus 165 ~~~~~~~~~Id~~~~~e~v~~~i~~~l~~ 193 (196)
T 2c95_A 165 YEKRGIVRKVNAEGSVDSVFSQVCTHLDA 193 (196)
T ss_dssp HHHHTCEEEEECCSCHHHHHHHHHHHHHH
T ss_pred HHhcCcEEEEECCCCHHHHHHHHHHHHHH
Confidence 43334456777888999888888777643
No 111
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.35 E-value=29 Score=20.26 Aligned_cols=20 Identities=15% Similarity=0.458 Sum_probs=15.3
Q ss_pred hHHHHHHHHHhhcCCCCcEEE
Q 045879 34 TRHELIKFYNEHYSSNLMHLV 54 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~ 54 (96)
+.++|++||..+ ....+.|+
T Consensus 29 te~dl~~~F~~~-~v~~v~i~ 48 (109)
T 2dnn_A 29 MENDVRDFFHGL-RVDAVHLL 48 (109)
T ss_dssp CHHHHHHHTTTS-CCCEEEEC
T ss_pred CHHHHHHHhccC-CeeEEEEE
Confidence 899999999987 66555543
No 112
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=24.32 E-value=61 Score=19.19 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCHHHHHHHHHHHhhcc
Q 045879 49 NLMHLVVYSKESVDKIQGLVENKFQDI 75 (96)
Q Consensus 49 ~~~~l~v~G~~~~~~l~~~v~~~f~~~ 75 (96)
+-.+|.|.-+++.+++.+.|.+.|+.-
T Consensus 23 d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 23 EIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 346888889999999999999998843
No 113
>1n6z_A Hypothetical 12.3 kDa protein in ZDS2-URA5 intergenic region; structural proteomics, structural genomics, OCSP, NESG; NMR {Saccharomyces cerevisiae} SCOP: d.263.1.1
Probab=24.03 E-value=1.2e+02 Score=18.02 Aligned_cols=43 Identities=16% Similarity=0.279 Sum_probs=30.5
Q ss_pred ccCCcchHHHHHHHHHhh---------------cCCCCcEEEEEcCCCHHHHHHHHHHH
Q 045879 28 KAKGLDTRHELIKFYNEH---------------YSSNLMHLVVYSKESVDKIQGLVENK 71 (96)
Q Consensus 28 ~~~~~~~~~~l~~f~~~~---------------Y~~~~~~l~v~G~~~~~~l~~~v~~~ 71 (96)
...++.+.++|-.||.++ ..++-+++.|+-+ +++++.+.+.++
T Consensus 43 L~~~i~~~d~lN~~FDkFDE~I~iPNEghIKYEv~SDGLVVlivDk-~l~~vv~~v~~F 100 (105)
T 1n6z_A 43 LPFNVDELDELNTWFDKFDAEICIPNEGHIKYEISSDGLIVLMLDK-EIEEVVEKVKKF 100 (105)
T ss_dssp ECCCTTCHHHHHHHHHHHHHHHHTTCCSCEEEEEETTTEEEEEECG-GGHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHhhccceecCCCCceeEEecCCcEEEEEech-HHHHHHHHHHHH
Confidence 345667899999999986 3566677777765 666666666554
No 114
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=23.89 E-value=25 Score=24.06 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=18.6
Q ss_pred HHHHHHhhcCCCCcEEEEEcCCCHHHHH
Q 045879 38 LIKFYNEHYSSNLMHLVVYSKESVDKIQ 65 (96)
Q Consensus 38 l~~f~~~~Y~~~~~~l~v~G~~~~~~l~ 65 (96)
|..+-=+ ..|.||++...|.-|...|.
T Consensus 119 L~S~vi~-~LP~nMVlT~QGsDDIrkLl 145 (243)
T 3q7c_A 119 LTSAVID-ALPRNMVITCQGSDDIRKLL 145 (243)
T ss_dssp HHHHHHH-HSCTTCEEEESSHHHHHHHH
T ss_pred hHHHHHH-hCCcCcEEEeeChHHHHHHH
Confidence 3344333 57999999999987765554
No 115
>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E RNA-protein interaction, minor groove binding, antibiotic binding; 2.80A {Geobacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C
Probab=23.68 E-value=51 Score=18.02 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=15.8
Q ss_pred EEcCCCHHHHHHHHHHHhhcc
Q 045879 55 VYSKESVDKIQGLVENKFQDI 75 (96)
Q Consensus 55 v~G~~~~~~l~~~v~~~f~~~ 75 (96)
.+|+++++++.++++.-..++
T Consensus 26 ~vG~it~~qv~eIA~~K~~dl 46 (67)
T 1qa6_A 26 KVATIKRDKVREIAELKMPDL 46 (67)
T ss_dssp CCCCCTTTHHHHHHHHHGGGC
T ss_pred ccceecHHHHHHHHHHHHHhh
Confidence 578888888888887665543
No 116
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=23.56 E-value=95 Score=16.67 Aligned_cols=20 Identities=15% Similarity=0.071 Sum_probs=14.5
Q ss_pred EEEEcCCCHHHHHHHHHHHh
Q 045879 53 LVVYSKESVDKIQGLVENKF 72 (96)
Q Consensus 53 l~v~G~~~~~~l~~~v~~~f 72 (96)
-...|..+.+++.+++++++
T Consensus 87 ~~~~G~~~~~~l~~~l~~~l 106 (107)
T 1dby_A 87 ETIIGAVPKATIVQTVEKYL 106 (107)
T ss_dssp EEEESCCCHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHHHHh
Confidence 34677788888888887654
No 117
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=23.15 E-value=1.1e+02 Score=17.03 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=15.4
Q ss_pred EEEcCCCHHHHHHHHHHHhh
Q 045879 54 VVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 54 ~v~G~~~~~~l~~~v~~~f~ 73 (96)
...|..+.+++.+.++++.+
T Consensus 116 ~~~g~~~~~~l~~~l~~~l~ 135 (136)
T 1zzo_A 116 VVRGRMSQDELTRRVTALTS 135 (136)
T ss_dssp EEESCCCHHHHHHHHHHHC-
T ss_pred EEecCCCHHHHHHHHHHHhc
Confidence 57788888999998887653
No 118
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.87 E-value=26 Score=21.04 Aligned_cols=27 Identities=11% Similarity=-0.082 Sum_probs=18.1
Q ss_pred CCcEEEEEcCCCHHHHHHHHHHHhhcc
Q 045879 49 NLMHLVVYSKESVDKIQGLVENKFQDI 75 (96)
Q Consensus 49 ~~~~l~v~G~~~~~~l~~~v~~~f~~~ 75 (96)
.....+.+|+++.+.-++.|.++|+..
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~ 47 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQH 47 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 344556667777776667777787765
No 119
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.86 E-value=1e+02 Score=16.81 Aligned_cols=6 Identities=50% Similarity=0.695 Sum_probs=3.0
Q ss_pred hHHHHH
Q 045879 34 TRHELI 39 (96)
Q Consensus 34 ~~~~l~ 39 (96)
+.++|+
T Consensus 22 ~~~~l~ 27 (96)
T 2dgx_A 22 SRKELQ 27 (96)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 445555
No 120
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A*
Probab=22.58 E-value=1.7e+02 Score=22.10 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=19.7
Q ss_pred CCCcEEEEEcCCCHHHHHHHHHHHh
Q 045879 48 SNLMHLVVYSKESVDKIQGLVENKF 72 (96)
Q Consensus 48 ~~~~~l~v~G~~~~~~l~~~v~~~f 72 (96)
|.++.|+++++++.+.+.++++.+-
T Consensus 345 ~~~~~Ii~Sd~Lde~~~~~ii~~l~ 369 (484)
T 3dhf_A 345 PPYLRVIQGDGVDINTLQEIVEGMK 369 (484)
T ss_dssp CTTEEEEECSSCSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHHHHHHHH
Confidence 5589999999999988777665543
No 121
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=22.42 E-value=1.4e+02 Score=18.05 Aligned_cols=28 Identities=11% Similarity=0.081 Sum_probs=19.6
Q ss_pred hcCCCCcEEEEEcCCCHHHHHHHHHHHh
Q 045879 45 HYSSNLMHLVVYSKESVDKIQGLVENKF 72 (96)
Q Consensus 45 ~Y~~~~~~l~v~G~~~~~~l~~~v~~~f 72 (96)
+|......++|-++.+.+++.+.|.+.+
T Consensus 157 ~~~~~~~~~~id~~~~~~~v~~~i~~~l 184 (186)
T 3cm0_A 157 YYEARGVLKRVDGLGTPDEVYARIRAAL 184 (186)
T ss_dssp HHHHTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred HHHhcCcEEEEECCCCHHHHHHHHHHHh
Confidence 3432334677888889999988887665
No 122
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=22.33 E-value=80 Score=22.39 Aligned_cols=35 Identities=11% Similarity=0.066 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHH
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVEN 70 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~ 70 (96)
+.++|++--+. ...++.|.++|+++++.+.++++.
T Consensus 237 s~~~l~~av~~--~~~~v~leaSGGIt~~~i~~~A~t 271 (300)
T 3l0g_A 237 SISEIKKAVDI--VNGKSVLEVSGCVNIRNVRNIALT 271 (300)
T ss_dssp CHHHHHHHHHH--HTTSSEEEEESSCCTTTHHHHHTT
T ss_pred CHHHHHHHHHh--hcCceEEEEECCCCHHHHHHHHHc
Confidence 55666666543 235888999999998888887653
No 123
>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A
Probab=22.12 E-value=67 Score=25.60 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=25.5
Q ss_pred HHHHHHhhcCCCCcEEEEEcCCC-HHHHHHHHHHHhhcc
Q 045879 38 LIKFYNEHYSSNLMHLVVYSKES-VDKIQGLVENKFQDI 75 (96)
Q Consensus 38 l~~f~~~~Y~~~~~~l~v~G~~~-~~~l~~~v~~~f~~~ 75 (96)
|++||.......+..+||..+.+ -.+++.++.+++..+
T Consensus 21 L~Ef~h~d~~~~~~~VVIL~~~~P~~ELe~lL~~~~~~V 59 (726)
T 3mt5_A 21 LKDFLHKDRDDVNVEIVFLHNISPNLELEALFKRHFTQV 59 (726)
T ss_dssp HHHHHHHCTTTTTCEEEEECSSCCCHHHHTTHHHHCSSE
T ss_pred HHHHHhccccccCCcEEEEeCCCCCHHHHHHHHhhcCce
Confidence 56666666666667888888765 346777777665543
No 124
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=21.94 E-value=74 Score=20.63 Aligned_cols=30 Identities=7% Similarity=0.108 Sum_probs=21.4
Q ss_pred hcCCCCcEEEEEcCCCHHHHHHHHHHHhhc
Q 045879 45 HYSSNLMHLVVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 45 ~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~ 74 (96)
.=+|+.|.|+|..|.-=-++.+.|.+++..
T Consensus 16 ~~~~~~MkIaIgsDhaG~~lK~~i~~~L~~ 45 (166)
T 3s5p_A 16 TQGPGSMKVAFASDHGGRDLRMFLQQRASA 45 (166)
T ss_dssp ---CTTCEEEEEECGGGHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEEECchHHHHHHHHHHHHHH
Confidence 347889999999997755677777777754
No 125
>2c5k_P Vacuolar protein sorting protein 51; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae}
Probab=21.69 E-value=51 Score=14.79 Aligned_cols=10 Identities=50% Similarity=0.707 Sum_probs=8.5
Q ss_pred hHHHHHHHHH
Q 045879 34 TRHELIKFYN 43 (96)
Q Consensus 34 ~~~~l~~f~~ 43 (96)
.|..|++||+
T Consensus 12 KR~lLkeyY~ 21 (26)
T 2c5k_P 12 RRLLLREFYN 21 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7888999986
No 126
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=21.66 E-value=80 Score=16.93 Aligned_cols=22 Identities=9% Similarity=0.102 Sum_probs=15.3
Q ss_pred cEEEEEcCCCHHHHHHHHHHHh
Q 045879 51 MHLVVYSKESVDKIQGLVENKF 72 (96)
Q Consensus 51 ~~l~v~G~~~~~~l~~~v~~~f 72 (96)
.+-...|..+.+++.+++++++
T Consensus 87 ~~~~~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 87 LVDSLVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp EEEEEESCCCHHHHHHHHHHHC
T ss_pred EEEeeeccCCHHHHHHHHHHHh
Confidence 3344667778888888887764
No 127
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=21.52 E-value=69 Score=18.02 Aligned_cols=30 Identities=3% Similarity=0.082 Sum_probs=22.1
Q ss_pred CCCCcEEEEEcCCCHHHHHHHHHHHhhccc
Q 045879 47 SSNLMHLVVYSKESVDKIQGLVENKFQDIR 76 (96)
Q Consensus 47 ~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~ 76 (96)
....|.=+.+|+++.+.-++.|.++|+...
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G 34 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYA 34 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTC
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhC
Confidence 345677778888888777777888887553
No 128
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.33 E-value=60 Score=17.49 Aligned_cols=35 Identities=9% Similarity=0.220 Sum_probs=22.9
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEE-----------cCCCHHHHHHHHH
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVY-----------SKESVDKIQGLVE 69 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~-----------G~~~~~~l~~~v~ 69 (96)
+.++|++||.++ ....+.|..- -=-+.+++.+.+.
T Consensus 23 t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 23 TEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp CHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH
T ss_pred CHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH
Confidence 899999999987 6666555432 1135566666654
No 129
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.29 E-value=1e+02 Score=18.35 Aligned_cols=23 Identities=4% Similarity=-0.015 Sum_probs=16.7
Q ss_pred CCcEEEEEcCCC--HHHHHHHHHHH
Q 045879 49 NLMHLVVYSKES--VDKIQGLVENK 71 (96)
Q Consensus 49 ~~~~l~v~G~~~--~~~l~~~v~~~ 71 (96)
.++++++.|-.+ .+++.++|+.+
T Consensus 24 ~g~~i~itG~~~~~r~~l~~~i~~~ 48 (129)
T 2d8m_A 24 QGVVVVLSGFQNPFRSELRDKALEL 48 (129)
T ss_dssp TTEEEEEESCCTTHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCcHHHHHHHHHHHHc
Confidence 488999999875 55677666544
No 130
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=21.24 E-value=1.8e+02 Score=21.16 Aligned_cols=33 Identities=12% Similarity=0.013 Sum_probs=23.3
Q ss_pred HHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHH
Q 045879 37 ELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVEN 70 (96)
Q Consensus 37 ~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~ 70 (96)
.+++.+++.=. .++.|+++|+++.+.+.++.+.
T Consensus 258 ~v~~~ld~~G~-~~~~I~aSggl~~~~i~~l~~~ 290 (398)
T 2i1o_A 258 EVRWELALRGR-SDIKIMVSGGLDENTVKKLREA 290 (398)
T ss_dssp HHHHHHHHTTC-TTSEEEEESSCCHHHHHHHHHT
T ss_pred HHHHHHHhCCC-CceEEEEeCCCCHHHHHHHHHc
Confidence 34444444211 3589999999999999988765
No 131
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=21.13 E-value=57 Score=22.19 Aligned_cols=18 Identities=17% Similarity=0.499 Sum_probs=15.1
Q ss_pred CcchHHHHHHHHHhhcCC
Q 045879 31 GLDTRHELIKFYNEHYSS 48 (96)
Q Consensus 31 ~~~~~~~l~~f~~~~Y~~ 48 (96)
.++..+.+++||+++|.=
T Consensus 304 d~d~~~~~~~~y~~f~~~ 321 (326)
T 3psh_A 304 DVDLDKMVNDYYQKFYRT 321 (326)
T ss_dssp TCCHHHHHHHHHHHHTSS
T ss_pred CCChHHHHHHHHHHHhCC
Confidence 467899999999999863
No 132
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.05 E-value=71 Score=18.06 Aligned_cols=27 Identities=11% Similarity=0.008 Sum_probs=20.8
Q ss_pred CCCcEEEEEcCCCHHHHHHHHHHHhhc
Q 045879 48 SNLMHLVVYSKESVDKIQGLVENKFQD 74 (96)
Q Consensus 48 ~~~~~l~v~G~~~~~~l~~~v~~~f~~ 74 (96)
+++......|..+.+++.+++.+++..
T Consensus 92 ~g~~~~~~~G~~~~~~l~~~l~~~~~~ 118 (133)
T 1x5d_A 92 KGESPVDYDGGRTRSDIVSRALDLFSD 118 (133)
T ss_dssp TTEEEEEECSCCSHHHHHHHHHHHHHH
T ss_pred CCCceEEecCCCCHHHHHHHHHHHhhc
Confidence 344555577888999999999998864
No 133
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2
Probab=20.93 E-value=1.7e+02 Score=21.41 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhcCCCCc-EEEEEcCCCHHHHHHHHH
Q 045879 35 RHELIKFYNEHYSSNLM-HLVVYSKESVDKIQGLVE 69 (96)
Q Consensus 35 ~~~l~~f~~~~Y~~~~~-~l~v~G~~~~~~l~~~v~ 69 (96)
.+++++.|++.=.+.+. .|+++++++.+.+.++.+
T Consensus 297 ~~~~r~~ld~~G~~~~~K~Iv~SdgLde~~i~~l~~ 332 (408)
T 1yir_A 297 AEKTIAHYLKLGIDPLTKTLVFSDGLDLPRALKIYR 332 (408)
T ss_dssp HHHHHHHHHHHTCCGGGSEEEECSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCceEEEECCCCCHHHHHHHHH
Confidence 45677788777666667 788888899888887765
No 134
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=20.90 E-value=1.1e+02 Score=16.97 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=16.6
Q ss_pred CcEEEEEcC--CCHHHHHHHHHHH
Q 045879 50 LMHLVVYSK--ESVDKIQGLVENK 71 (96)
Q Consensus 50 ~~~l~v~G~--~~~~~l~~~v~~~ 71 (96)
++++++.|- .+.++++++|...
T Consensus 15 g~~~~isg~~~~~~~~L~~~i~~~ 38 (97)
T 2ebw_A 15 GVAIYVNGYTDPSAEELRKLMMLH 38 (97)
T ss_dssp TCEEEECSSCSSCHHHHHHHHHHT
T ss_pred CeEEEEeCCCcccHHHHHHHHHHc
Confidence 688889874 5677888887654
No 135
>3m4w_A Sigma-E factor regulatory protein RSEB; RSEA, RSEB, RSEP, stress response, sigma factor, periplasm, membrane, transmembrane; 2.30A {Escherichia coli} PDB: 2p4b_A 2v43_A 2v42_A
Probab=20.85 E-value=71 Score=22.31 Aligned_cols=21 Identities=5% Similarity=0.134 Sum_probs=17.7
Q ss_pred CCcEEEEEcCCCHHHHHHHHH
Q 045879 49 NLMHLVVYSKESVDKIQGLVE 69 (96)
Q Consensus 49 ~~~~l~v~G~~~~~~l~~~v~ 69 (96)
++..|+|+|.++...++.+++
T Consensus 267 ~~~~iTvVGEVP~~Ta~ria~ 287 (295)
T 3m4w_A 267 DNAEITIVGELPPQTAKRIAE 287 (295)
T ss_dssp TTEEEEEEESSCHHHHHHHHT
T ss_pred CCEEEEEEECCCHHHHHHHHH
Confidence 678999999999988877664
No 136
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=20.67 E-value=1.5e+02 Score=17.83 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=20.4
Q ss_pred hcCCCCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 45 HYSSNLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 45 ~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
+|......++|-++.+.+++.+.|.+.+.
T Consensus 165 ~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 193 (196)
T 1tev_A 165 LYEEMGKVKKIDASKSVDEVFDEVVQIFD 193 (196)
T ss_dssp HHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred HHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 34432335577888999999988887765
No 137
>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}
Probab=20.46 E-value=89 Score=16.94 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=9.3
Q ss_pred hHHHHHHHHHhh
Q 045879 34 TRHELIKFYNEH 45 (96)
Q Consensus 34 ~~~~l~~f~~~~ 45 (96)
++..+.+|++++
T Consensus 46 t~~~I~~F~~~~ 57 (65)
T 2lnh_A 46 TSKVIYDFIEKT 57 (65)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 677888888764
No 138
>1txl_A Metal-binding protein YODA; E.coli, structural genomics, NEW fold, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: b.60.1.4 PDB: 1s7d_A 1oej_A 1oee_A 1oek_A
Probab=20.22 E-value=99 Score=20.92 Aligned_cols=26 Identities=15% Similarity=0.374 Sum_probs=24.0
Q ss_pred chHHHHHHHHHhhcCCCCcEEEEEcC
Q 045879 33 DTRHELIKFYNEHYSSNLMHLVVYSK 58 (96)
Q Consensus 33 ~~~~~l~~f~~~~Y~~~~~~l~v~G~ 58 (96)
.+.+++++||..-|..+=-.|.|-|+
T Consensus 87 ~TaeeyKayy~~gYkTDv~~I~I~gn 112 (215)
T 1txl_A 87 KTFAEIKDYYHKGYATDIEMIGIEDG 112 (215)
T ss_dssp SCHHHHHHHHHHHHCCSEEEEEEETT
T ss_pred CCHHHHHHHHHhccCCCcceEEEECC
Confidence 48999999999999999999999886
No 139
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=20.18 E-value=70 Score=22.47 Aligned_cols=21 Identities=14% Similarity=0.147 Sum_probs=12.3
Q ss_pred CCcEEEEEcCCCHHHHHHHHH
Q 045879 49 NLMHLVVYSKESVDKIQGLVE 69 (96)
Q Consensus 49 ~~~~l~v~G~~~~~~l~~~v~ 69 (96)
.++.+.++|+++++.+.++++
T Consensus 241 ~~v~ieaSGGIt~~~i~~~a~ 261 (287)
T 3tqv_A 241 GKVALEVSGNIDRNSIVAIAK 261 (287)
T ss_dssp TTCEEEEESSCCTTTHHHHHT
T ss_pred CCceEEEECCCCHHHHHHHHH
Confidence 456666666666665555543
No 140
>2kpt_A Putative secreted protein; methods development, alpha/beta, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum}
Probab=20.16 E-value=89 Score=19.39 Aligned_cols=40 Identities=8% Similarity=0.018 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhccc
Q 045879 35 RHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIR 76 (96)
Q Consensus 35 ~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~ 76 (96)
.+.|.++.++ ....++|+.+-.+.-+.++++..++|..|.
T Consensus 33 ~~~l~~l~~~--tg~qi~VvtV~sl~g~~ie~yA~~l~~~wg 72 (148)
T 2kpt_A 33 QAAIDDVKAS--EQKVIFVVFLSSFDGVDPETWTQQALQANG 72 (148)
T ss_dssp HHHHHHHHHH--SCCEEEEEECSCCTTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh--hCCEEEEEEECCCCCCCHHHHHHHHHHHhC
Confidence 4455666554 344677777766665667899999998887
No 141
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=20.15 E-value=1.8e+02 Score=18.74 Aligned_cols=30 Identities=23% Similarity=0.176 Sum_probs=22.3
Q ss_pred hcCCCCcEEEEEcCCCHHHHHHHHHHHhhcc
Q 045879 45 HYSSNLMHLVVYSKESVDKIQGLVENKFQDI 75 (96)
Q Consensus 45 ~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~ 75 (96)
+|...+..+.|-|.-+ +++.+.|.+.+..+
T Consensus 206 ~~~~~~~~~~id~~~~-~~v~~~i~~~l~~~ 235 (246)
T 2bbw_A 206 LYKSRGVLHQFSGTET-NKIWPYVYTLFSNK 235 (246)
T ss_dssp HHHHTTCEEEEECSCH-HHHHHHHHHHHHTT
T ss_pred HHhhcCcEEEECCCCc-HHHHHHHHHHHHhh
Confidence 4543456788889888 88888888887653
No 142
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=20.14 E-value=38 Score=18.90 Aligned_cols=11 Identities=9% Similarity=0.652 Sum_probs=8.9
Q ss_pred hHHHHHHHHHh
Q 045879 34 TRHELIKFYNE 44 (96)
Q Consensus 34 ~~~~l~~f~~~ 44 (96)
+.++|+++|.+
T Consensus 36 t~~~L~~~F~~ 46 (97)
T 2xnq_A 36 SKEDLFRIFSP 46 (97)
T ss_dssp CHHHHHHHHGG
T ss_pred CHHHHHHHHHh
Confidence 78888888875
No 143
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=20.09 E-value=1e+02 Score=20.20 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEcCCCH
Q 045879 34 TRHELIKFYNEHYSSNLMHLVVYSKESV 61 (96)
Q Consensus 34 ~~~~l~~f~~~~Y~~~~~~l~v~G~~~~ 61 (96)
..+.|.++.++...+.+.-++|+||++.
T Consensus 171 q~~~l~~~i~~~~~~~~~pvIl~GDfN~ 198 (301)
T 1zwx_A 171 QMQEIQTFIAKKNIPKDEIIFIGGDLNV 198 (301)
T ss_dssp HHHHHHHHHHHHTCCTTSEEEEEEECCC
T ss_pred HHHHHHHHHHHhCCCCCCeEEEEeeCCC
Confidence 3456777777764556678999999874
No 144
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=20.08 E-value=1.6e+02 Score=18.06 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=20.4
Q ss_pred cCCCCcEEEEEcCCCHHHHHHHHHHHhh
Q 045879 46 YSSNLMHLVVYSKESVDKIQGLVENKFQ 73 (96)
Q Consensus 46 Y~~~~~~l~v~G~~~~~~l~~~v~~~f~ 73 (96)
|.....+++|-++.+.+++.+.|.+.+.
T Consensus 173 ~~~~~~vi~id~~~~~e~v~~~i~~~l~ 200 (203)
T 1ukz_A 173 FETKSKVVRVRCDRSVEDVYKDVQDAIR 200 (203)
T ss_dssp HHTTTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred HHhcCcEEEEECCCCHHHHHHHHHHHHh
Confidence 4434556678888999999888877664
Done!