BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045880
         (142 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
 pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
          Length = 1253

 Score = 26.6 bits (57), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 5   EIVEKILDAFLVAIQEEDTNGKNIVLLAYTDVFENHQPSS---LIPGATLQMQYEIKWYK 61
           E  + +  A +   +E + N K  V  AY  + +  +P       P A  Q +  +   +
Sbjct: 393 EFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQ 452

Query: 62  EHFTKTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAAST 102
                  K L K+  +  +KT + CF     + NV   A T
Sbjct: 453 SQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALT 493


>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
          Length = 1230

 Score = 26.6 bits (57), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 5   EIVEKILDAFLVAIQEEDTNGKNIVLLAYTDVFENHQPSS---LIPGATLQMQYEIKWYK 61
           E  + +  A +   +E + N K  V  AY  + +  +P       P A  Q +  +   +
Sbjct: 370 EFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQ 429

Query: 62  EHFTKTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAAST 102
                  K L K+  +  +KT + CF     + NV   A T
Sbjct: 430 SQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALT 470


>pdb|2ZS6|B Chain B, Ha3 Subcomponent Of Botulinum Type C Progenitor Toxin
 pdb|4EN6|B Chain B, Crystal Structure Of Ha70 (Ha3) Subcomponent Of
           Clostridium Botulinum Type C Progenitor Toxin In Complex
           With Alpha 2-3-Sialyllactose
 pdb|4EN7|B Chain B, Crystal Structure Of Ha70 (Ha3) Subcomponent Of
           Clostridium Botulinum Type C Progenitor Toxin In Complex
           With Alpha 2-3-Sialyllactosamine
 pdb|4EN8|B Chain B, Crystal Structure Of Ha70 (Ha3) Subcomponent Of
           Clostridium Botulinum Type C Progenitor Toxin In Complex
           With Alpha 2-6-Sialyllactose
 pdb|4EN9|B Chain B, Crystal Structure Of Ha70 (Ha3) Subcomponent Of
           Clostridium Botulinum Type C Progenitor Toxin In Complex
           With Alpha 2-6-Sialyllactosamine
          Length = 420

 Score = 25.8 bits (55), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 21  EDTNGKNIVLLA-YTDVFENHQPSSLIPGAT 50
           E  NG N++ +  Y+D+  N +P SL+ GAT
Sbjct: 367 ESINGYNLITINNYSDLLNNVEPISLLNGAT 397


>pdb|2ZOE|B Chain B, Ha3 Subcomponent Of Clostridium Botulinum Type C
           Progenitor Toxin, Complex With N-Acetylneuramic Acid
          Length = 420

 Score = 25.8 bits (55), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 21  EDTNGKNIVLLA-YTDVFENHQPSSLIPGAT 50
           E  NG N++ +  Y+D+  N +P SL+ GAT
Sbjct: 367 ESINGYNLITINNYSDLLNNVEPISLLNGAT 397


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,933,007
Number of Sequences: 62578
Number of extensions: 141179
Number of successful extensions: 472
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 472
Number of HSP's gapped (non-prelim): 5
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)