BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045881
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Capric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK1|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Lauric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK2|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Myristic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK3|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Palmitoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK4|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Stearic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK5|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Oleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK6|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Alpha-Linolenic
Acid Revealed By High-Resolution X-Ray Crystallography
pdb|1FK7|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Ricinoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1AFH|A Chain A, Lipid Transfer Protein From Maize Seedlings, Nmr, 15
Structures
pdb|1MZL|A Chain A, Maize Nonspecific Lipid Transfer Protein
pdb|1MZM|A Chain A, Maize Nonspecific Lipid Transfer Protein Complexed With
Palmitate
Length = 93
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 41 CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
C V +A C+ + G PS CC+ ++ LN A+ + + C C++ G
Sbjct: 4 CGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAART-TADRRAACNCLKNAAAGVS- 61
Query: 101 PLLASRIQQLPITCNTSLSFPISASMDCSQ 130
L A +P C S+ + IS S DCS+
Sbjct: 62 GLNAGNAASIPSKCGVSIPYTISTSTDCSR 91
>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10
Structures
pdb|1JTB|A Chain A, Lipid Transfer Protein Complexed With Palmitoyl Coenzyme
A, Nmr, 16 Structures
pdb|1LIP|A Chain A, Barley Lipid Transfer Protein (Nmr, 4 Structures)
Length = 91
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 41 CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
C V + CL ++ G PS +CCN ++ L+ A+ G+ Q C C++ + RG
Sbjct: 3 CGQVDSKMKPCLTYVQG-GPGPSGECCNGVRDLHNQAQ-SSGDRQTVCNCLKGIARGIHN 60
Query: 101 PLLASRIQQLPITCNTSLSFPISASMDCSQ 130
L + +P CN ++ + IS +DCS+
Sbjct: 61 -LNLNNAASIPSKCNVNVPYTISPDIDCSR 89
>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In
Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl
pdb|3GSH|A Chain A, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
pdb|3GSH|B Chain B, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
Length = 91
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 41 CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
C V + CL ++ G PS +CCN ++ L+ A+ G+ Q C C++ + RG
Sbjct: 3 CGQVDSKMKPCLTYVQG-GPGPSGECCNGVRDLHNQAQ-SSGDRQTVCNCLKGIARGIHN 60
Query: 101 PLLASRIQQLPITCNTSLSFPISASMDCSQ 130
L + +P CN ++ + IS +DCS+
Sbjct: 61 -LNLNNAASIPSKCNVNVPYTISPDIDCSR 89
>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVB|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|B Chain B, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1BV2|A Chain A, Lipid Transfer Protein From Rice Seeds, Nmr, 14 Structures
pdb|1RZL|A Chain A, Rice Nonspecific Lipid Transfer Protein
Length = 91
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 41 CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
C V +A CL + G PS CC+ ++ L A + + C C++ RG +
Sbjct: 3 CGQVNSAVGPCLTYARG-GAGPSAACCSGVRSLKA-AASTTADRRTACNCLKNAARGIKG 60
Query: 101 PLLASRIQQLPITCNTSLSFPISASMDCSQ 130
L A +P C S+ + ISAS+DCS+
Sbjct: 61 -LNAGNAASIPSKCGVSVPYTISASIDCSR 89
>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2
Length = 93
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 41 CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
C V + CL +LTG PS +CC +KKL + A + + Q C C+++ G+
Sbjct: 4 CGAVTSDLSPCLTYLTG-GPGPSPQCCGGVKKL-LAAANTTPDRQAACNCLKSAA-GSIT 60
Query: 101 PLLASRIQQLPITCNTSLSFPISASMDCS 129
L + LP C ++ + IS + +C+
Sbjct: 61 KLNTNNAAALPGKCGVNIPYKISTTTNCN 89
>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2ALG|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
Length = 92
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 41 CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIE---AMVRG 97
C V ++ C+ ++ G P CCN I+ +N +A+ + Q C C++ A V G
Sbjct: 4 CGQVSSSLAPCIPYVRGGGAVPP-ACCNGIRNVNNLARTTP-DRQAACNCLKQLSASVPG 61
Query: 98 TQPPLLASRIQQLPITCNTSLSFPISASMDCS 129
P + LP C S+ + ISAS +C+
Sbjct: 62 VNP----NNAAALPGKCGVSIPYKISASTNCA 89
>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1
Length = 91
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 41 CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
C V + CL +L P +CC +K L A+ + + Q C C+++ G
Sbjct: 4 CGQVTSNLAPCLAYLR--NTGPLGRCCGGVKALVNSARTTE-DRQIACTCLKSAA-GAIS 59
Query: 101 PLLASRIQQLPITCNTSLSFPISASMDCSQ 130
+ + LP TC ++ + IS S DCS+
Sbjct: 60 GINLGKAAGLPSTCGVNIPYKISPSTDCSK 89
>pdb|1TXU|A Chain A, Crystal Structure Of The Vps9 Domain Of Rabex-5
Length = 273
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 23/53 (43%)
Query: 65 KCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTS 117
KC HI I K+ +A F + +V PP L S IQ + CN S
Sbjct: 172 KCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPS 224
>pdb|2OT3|A Chain A, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 274
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 23/53 (43%)
Query: 65 KCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTS 117
KC HI I K+ +A F + +V PP L S IQ + CN S
Sbjct: 170 KCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPS 222
>pdb|2Q5H|A Chain A, Crystal Structure Of Apo-Wildtype Glycyl-Trna Synthetase
Length = 691
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 82 GNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCN 115
G A R CY + R T+ PL+A + + P T N
Sbjct: 406 GCADRSCYDLSCHARATKVPLVAEKPLKEPKTVN 439
>pdb|2Q5I|A Chain A, Crystal Structure Of Apo S581l Glycyl-Trna Synthetase
Mutant
Length = 691
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 82 GNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCN 115
G A R CY + R T+ PL+A + + P T N
Sbjct: 406 GCADRSCYDLSCHARATKVPLVAEKPLKEPKTVN 439
>pdb|2PMF|A Chain A, The Crystal Structure Of A Human Glycyl-trna Synthetase
Mutant
Length = 693
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 82 GNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCN 115
G A R CY + R T+ PL+A + + P T N
Sbjct: 406 GCADRSCYDLSCHARATKVPLVAEKPLKEPKTVN 439
>pdb|2PME|A Chain A, The Apo Crystal Structure Of The Glycyl-Trna Synthetase
pdb|2ZT5|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Ap4a (Cocrystallized With Atp)
pdb|2ZT6|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Ampcpp
pdb|2ZT7|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Glycine And Atp
pdb|2ZT8|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Gly-Amp Analog
pdb|2ZXF|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Ap4a (Cocrystallized With Ap4a)
Length = 693
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 82 GNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCN 115
G A R CY + R T+ PL+A + + P T N
Sbjct: 406 GCADRSCYDLSCHARATKVPLVAEKPLKEPKTVN 439
>pdb|1SNB|A Chain A, Structure Of Scorpion Neurotoxin Bmk M8
Length = 64
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 13/63 (20%)
Query: 30 GEDEYIESKQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCY 89
G D YI + C Y + PYC + T N K R GNA CY
Sbjct: 1 GRDAYIADSENCTYFCGSNPYCNDVCTE----------NGAKSGYCQWAGRYGNA---CY 47
Query: 90 CIE 92
CI+
Sbjct: 48 CID 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,019,739
Number of Sequences: 62578
Number of extensions: 90892
Number of successful extensions: 250
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 14
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)