Query 045881
Match_columns 130
No_of_seqs 122 out of 790
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:27:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01960 nsLTP1 nsLTP1: Non-spe 99.9 1.5E-26 3.2E-31 156.6 5.0 89 39-129 1-89 (89)
2 cd04660 nsLTP_like nsLTP_like: 99.5 6.2E-15 1.4E-19 96.6 3.7 68 41-120 1-70 (73)
3 cd00010 AAI_LTSS AAI_LTSS: Alp 99.5 2.1E-14 4.4E-19 90.8 3.6 62 48-116 1-63 (63)
4 PF14368 LTP_2: Probable lipid 99.3 1.5E-13 3.3E-18 92.7 0.3 72 37-120 18-93 (96)
5 cd01959 nsLTP2 nsLTP2: Non-spe 99.1 5.2E-11 1.1E-15 77.0 3.5 61 46-119 4-64 (66)
6 PF00234 Tryp_alpha_amyl: Prot 99.0 5.1E-12 1.1E-16 84.7 -5.0 74 41-128 8-90 (90)
7 smart00499 AAI Plant lipid tra 99.0 8.2E-10 1.8E-14 70.7 4.1 70 41-120 1-76 (79)
8 cd01958 HPS_like HPS_like: Hyd 78.7 2.4 5.2E-05 28.7 2.8 74 40-120 3-81 (85)
9 PF14547 Hydrophob_seed: Hydro 77.6 0.58 1.3E-05 31.6 -0.5 72 41-119 2-79 (85)
10 PF15284 PAGK: Phage-encoded v 62.2 9 0.0002 24.3 2.5 27 6-32 2-28 (61)
11 PF07172 GRP: Glycine rich pro 37.8 46 0.001 22.7 3.1 9 6-14 4-12 (95)
12 PF09680 Tiny_TM_bacill: Prote 26.7 77 0.0017 16.4 2.1 10 11-20 8-17 (24)
13 PLN00214 putative protein; Pro 24.7 61 0.0013 23.1 2.0 68 1-72 1-71 (115)
14 PF05617 Prolamin_like: Prolam 23.9 1E+02 0.0022 19.0 2.8 15 60-74 26-40 (70)
15 PF05399 EVI2A: Ectropic viral 23.9 91 0.002 24.7 3.0 20 7-26 130-149 (227)
16 cd00261 AAI_SS AAI_SS: Alpha-A 20.1 71 0.0015 21.5 1.6 62 46-118 13-104 (110)
No 1
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.93 E-value=1.5e-26 Score=156.58 Aligned_cols=89 Identities=37% Similarity=0.667 Sum_probs=81.3
Q ss_pred CCchhcccCccccHHHhhCCCCCCCHhhHHHhHHHHHhhhccCCCccccceeeeccccCCCCCCCHHHHhhccccCCCCC
Q 045881 39 QGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSL 118 (130)
Q Consensus 39 ~~C~~v~~~L~pC~~yv~g~~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~~~~in~~ra~~LP~~Cgv~~ 118 (130)
.+|.++...|.||++|+++++..|+++||+++++|++.+++.. |++++|+|+++...+++ +||++|+++||++||+++
T Consensus 1 ~~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~-~~~~~C~C~~~~~~~~~-~i~~~~a~~LP~~C~v~~ 78 (89)
T cd01960 1 ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTA-DRQAACNCLKSAAAGIS-GLNPGRAAGLPGKCGVSI 78 (89)
T ss_pred CCHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCC-chhhhhhcccccccccC-CCCHHHHHhChHhcccCC
Confidence 3699999999999999998877899999999999999888764 99999999988777763 599999999999999999
Q ss_pred CCCCCCCCCCC
Q 045881 119 SFPISASMDCS 129 (130)
Q Consensus 119 p~~is~~~dC~ 129 (130)
+|||+++|||+
T Consensus 79 ~~~i~~~~dC~ 89 (89)
T cd01960 79 PYPISPSTDCS 89 (89)
T ss_pred CCCCCCCCCCC
Confidence 99999999996
No 2
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.53 E-value=6.2e-15 Score=96.56 Aligned_cols=68 Identities=24% Similarity=0.506 Sum_probs=54.0
Q ss_pred chhcccCccccHHHhhCCC--CCCCHhhHHHhHHHHHhhhccCCCccccceeeeccccCCCCCCCHHHHhhccccCCCCC
Q 045881 41 CEYVFTAFPYCLEFLTGLY--YKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSL 118 (130)
Q Consensus 41 C~~v~~~L~pC~~yv~g~~--~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~~~~in~~ra~~LP~~Cgv~~ 118 (130)
|+.....|.||++|+++++ ..|++.||+++|++ |++ |+|.+.....+. .||.++|++||++||+++
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~---------~~~--C~C~~~~~~~~~-~i~~~~a~~Lp~~Cgv~~ 68 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA---------DLP--CLCRYKTSLVLQ-IIDPDKAVYLPAKCGLPL 68 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC---------CcC--CEeeccCCCccc-ccCHHHHHHHHHHcCCCC
Confidence 4544578999999999876 36999999999973 444 888765544553 699999999999999987
Q ss_pred CC
Q 045881 119 SF 120 (130)
Q Consensus 119 p~ 120 (130)
|.
T Consensus 69 p~ 70 (73)
T cd04660 69 PP 70 (73)
T ss_pred CC
Confidence 64
No 3
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.49 E-value=2.1e-14 Score=90.82 Aligned_cols=62 Identities=26% Similarity=0.517 Sum_probs=52.0
Q ss_pred ccccHHHhhCCCCCCCHhhHHHhHHHHHhhhccCCCccccceeeeccccCCCCCC-CHHHHhhccccCCC
Q 045881 48 FPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPL-LASRIQQLPITCNT 116 (130)
Q Consensus 48 L~pC~~yv~g~~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~~~~i-n~~ra~~LP~~Cgv 116 (130)
|.||++|+++++..|+++||++++++++ .|++++|+++++...... ++ |.+++.+||++||+
T Consensus 1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~------~~~~ClC~~~~~~~~~~~-~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVK------SDPKCLCAALNGPGASLL-GLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCCCCCChHHHHHHHHHHh------cChhhHHHHHcCcccccc-CcccHHHHHhchHhcCC
Confidence 5799999998877899999999999875 277889999987654432 44 79999999999996
No 4
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.34 E-value=1.5e-13 Score=92.72 Aligned_cols=72 Identities=22% Similarity=0.464 Sum_probs=47.3
Q ss_pred ccCCchhcccCcccc---HHHhhCCCCCCCHhhHHHhHHHHHhhhccCCCccccceeeeccc-cCCCCCCCHHHHhhccc
Q 045881 37 SKQGCEYVFTAFPYC---LEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMV-RGTQPPLLASRIQQLPI 112 (130)
Q Consensus 37 a~~~C~~v~~~L~pC---~~yv~g~~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~-~~~~~~in~~ra~~LP~ 112 (130)
...+|. ..|.+| ..|+.+ ...||+.||+++|++.+ .|+.++|+.+++.. ..+ +||.+|+.+||+
T Consensus 18 ~~~~c~---~~l~~c~~~~~~~~~-~~~Ps~~CC~~l~~~~~------~~~~ClC~~~~~~~~~~~--~in~~~a~~Lp~ 85 (96)
T PF14368_consen 18 CCCSCA---NSLLPCCPCLCYVTG-GPAPSAACCSALKSVVQ------ADPPCLCQLLNSPGAPGF--GINVTRALALPA 85 (96)
T ss_dssp BTTB-H---CCCCHH--HHHHHCC------HHHHHHHCC----------HCCHHHCCCC-CCHCHH--CCTCHHHHHHHH
T ss_pred CcchhH---HHHhccccchhccCC-CCCCCHHHHHHHHHhcc------CCCCCHHHhcCccccccC--CcCHHHHHHHHH
Confidence 345664 447776 788884 45899999999999853 26778888887654 344 799999999999
Q ss_pred cCCCCCCC
Q 045881 113 TCNTSLSF 120 (130)
Q Consensus 113 ~Cgv~~p~ 120 (130)
+||++.+.
T Consensus 86 ~Cg~~~~~ 93 (96)
T PF14368_consen 86 ACGVPVPP 93 (96)
T ss_dssp HCTSS-S-
T ss_pred HcCCCCCC
Confidence 99999876
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.12 E-value=5.2e-11 Score=76.97 Aligned_cols=61 Identities=18% Similarity=0.408 Sum_probs=47.3
Q ss_pred cCccccHHHhhCCCCCCCHhhHHHhHHHHHhhhccCCCccccceeeeccccCCCCCCCHHHHhhccccCCCCCC
Q 045881 46 TAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSLS 119 (130)
Q Consensus 46 ~~L~pC~~yv~g~~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~~~~in~~ra~~LP~~Cgv~~p 119 (130)
+.|.+|++|++++ ..||++||+.+|+- + .++|..+++ ..+...||.++|+.||++||+++|
T Consensus 4 ~~L~~C~~ai~~~-~~Ps~~CC~~Lk~~---------~-~CLC~y~~~--p~l~~~i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 4 TQLSPCLPAILGG-SPPSAACCAKLKEQ---------Q-SCLCQYAKN--PSLKQYVNSPNARKVLAACGVPYP 64 (66)
T ss_pred hhcccCHHHHhCC-CCCCHHHHHHHhcC---------C-CCeeeeecC--ccHHhhcCcHHHHHHHHHcCCCCC
Confidence 4799999999976 47999999998871 3 455555544 234346999999999999999875
No 6
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=99.01 E-value=5.1e-12 Score=84.72 Aligned_cols=74 Identities=36% Similarity=0.753 Sum_probs=55.6
Q ss_pred chhcccCccccHHHhhCCCCCCCHhhHHHhHHHHHhhhccCCCccccceeeeccccCC---------CCCCCHHHHhhcc
Q 045881 41 CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGT---------QPPLLASRIQQLP 111 (130)
Q Consensus 41 C~~v~~~L~pC~~yv~g~~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~---------~~~in~~ra~~LP 111 (130)
|..+...+.+|.+|++++...|+..||++++++. +++.|..++..+... ...++..+|..||
T Consensus 8 ~~~~~~~l~~c~~~~~~~~~~~~~~CC~~L~~l~---------~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP 78 (90)
T PF00234_consen 8 CSPVQVRLSPCLPYLQGGCQQPSQQCCQQLRQLD---------PQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLP 78 (90)
T ss_dssp CGTTSSHHHGGHHHHTTSSSHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHH
T ss_pred hhhccccccccHHHHhcccccchHHHhHHHHHHh---------HHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 4444456899999999876689999999999983 345666666544331 0258899999999
Q ss_pred ccCCCCCCCCCCCCCCC
Q 045881 112 ITCNTSLSFPISASMDC 128 (130)
Q Consensus 112 ~~Cgv~~p~~is~~~dC 128 (130)
+.||++++| +||
T Consensus 79 ~~C~v~~~~-----~~C 90 (90)
T PF00234_consen 79 SMCNVSPPY-----TDC 90 (90)
T ss_dssp HHTTSSSSS-----S-G
T ss_pred HHCCCCCCC-----CCC
Confidence 999999998 666
No 7
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=98.96 E-value=8.2e-10 Score=70.69 Aligned_cols=70 Identities=27% Similarity=0.566 Sum_probs=51.7
Q ss_pred chhcccCccccHHHhhCC--CCCCCHhhHHHhHHHHHhhhccCCCccccceeeeccccCCCCC----CCHHHHhhccccC
Q 045881 41 CEYVFTAFPYCLEFLTGL--YYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPP----LLASRIQQLPITC 114 (130)
Q Consensus 41 C~~v~~~L~pC~~yv~g~--~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~~~~----in~~ra~~LP~~C 114 (130)
|..+...+.+|.+|+++. ...|+.+||++++.++ ...|+|........... ++..++.+||+.|
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~----------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C 70 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN----------SAQCRCLALRAAVLGILEIPGVNAQNAASLPSAC 70 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc----------ccCCcchhhhcccccccchhhhhHHHHHhhHHhc
Confidence 556666778999999986 4578999999999974 12477754322222112 5899999999999
Q ss_pred CCCCCC
Q 045881 115 NTSLSF 120 (130)
Q Consensus 115 gv~~p~ 120 (130)
|+..++
T Consensus 71 ~~~~~~ 76 (79)
T smart00499 71 GVPPPY 76 (79)
T ss_pred CCCCCC
Confidence 999876
No 8
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=78.69 E-value=2.4 Score=28.65 Aligned_cols=74 Identities=15% Similarity=0.236 Sum_probs=43.3
Q ss_pred CchhcccCccccHHHhhCC----CCCCCHhhHHHhHHHHHhhhccCCCccccceeeeccccCCCCCCCHH-HHhhccccC
Q 045881 40 GCEYVFTAFPYCLEFLTGL----YYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLAS-RIQQLPITC 114 (130)
Q Consensus 40 ~C~~v~~~L~pC~~yv~g~----~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~~~~in~~-ra~~LP~~C 114 (130)
+|.....+|.-|..-+-.- +..|..+||.-+++|.+. | -..|+|-.--++-++..+|.. +..-|-..|
T Consensus 3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dl------d-AA~CLCtaikan~lgi~~~~pv~l~llln~C 75 (85)
T cd01958 3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADL------D-AAVCLCTAIKANILGISINIPVALSLLLNSC 75 (85)
T ss_pred CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhh------h-eeeeeeeeeeccccCcccccChhHHHHHHHH
Confidence 4665556677787766321 235779999999998652 1 246888532233332234333 333445579
Q ss_pred CCCCCC
Q 045881 115 NTSLSF 120 (130)
Q Consensus 115 gv~~p~ 120 (130)
|-..|-
T Consensus 76 Gk~~P~ 81 (85)
T cd01958 76 GRNVPP 81 (85)
T ss_pred cCcCCC
Confidence 988663
No 9
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=77.57 E-value=0.58 Score=31.56 Aligned_cols=72 Identities=17% Similarity=0.330 Sum_probs=41.9
Q ss_pred chhcccCccccHHHhh----CCCCCCCHhhHHHhHHHHHhhhccCCCccccceeeeccccCCC-CCCCHH-HHhhccccC
Q 045881 41 CEYVFTAFPYCLEFLT----GLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQ-PPLLAS-RIQQLPITC 114 (130)
Q Consensus 41 C~~v~~~L~pC~~yv~----g~~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~~-~~in~~-ra~~LP~~C 114 (130)
|.....+|.-|...+- ..+.++..+||+-++.|.+. .-..|+|...-+..+. .++|.. ....|-..|
T Consensus 2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~-------~AA~CLC~aika~vlg~i~~~ipv~l~~lln~C 74 (85)
T PF14547_consen 2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADL-------DAAVCLCTAIKANVLGLINVNIPVALNLLLNAC 74 (85)
T ss_pred CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccc-------hHHHHHHHHHhhhcccccccccccHHHHHHHHh
Confidence 5544457778888771 11234789999999998542 1246888422122221 133322 455667789
Q ss_pred CCCCC
Q 045881 115 NTSLS 119 (130)
Q Consensus 115 gv~~p 119 (130)
|-..|
T Consensus 75 Gk~~p 79 (85)
T PF14547_consen 75 GKTVP 79 (85)
T ss_pred CCcCc
Confidence 98754
No 10
>PF15284 PAGK: Phage-encoded virulence factor
Probab=62.24 E-value=9 Score=24.31 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcccc
Q 045881 6 RQFIGFTIIIFLLLLASESSAIIMGED 32 (130)
Q Consensus 6 ~~~~~~~~~~~~l~~~~~~~~~~~~~~ 32 (130)
|++-++.++++++|.+...++++||.+
T Consensus 2 kk~ksifL~l~~~LsA~~FSasamAa~ 28 (61)
T PF15284_consen 2 KKFKSIFLALVFILSAAGFSASAMAAD 28 (61)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHh
Confidence 567778888888888888888888884
No 11
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=37.81 E-value=46 Score=22.66 Aligned_cols=9 Identities=11% Similarity=0.534 Sum_probs=3.8
Q ss_pred chHHHHHHH
Q 045881 6 RQFIGFTII 14 (130)
Q Consensus 6 ~~~~~~~~~ 14 (130)
|+|+-|.++
T Consensus 4 K~~llL~l~ 12 (95)
T PF07172_consen 4 KAFLLLGLL 12 (95)
T ss_pred hHHHHHHHH
Confidence 444444333
No 12
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=26.69 E-value=77 Score=16.41 Aligned_cols=10 Identities=30% Similarity=1.032 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 045881 11 FTIIIFLLLL 20 (130)
Q Consensus 11 ~~~~~~~l~~ 20 (130)
+.+++|+||+
T Consensus 8 livVLFILLi 17 (24)
T PF09680_consen 8 LIVVLFILLI 17 (24)
T ss_pred hHHHHHHHHH
Confidence 4455555554
No 13
>PLN00214 putative protein; Provisional
Probab=24.70 E-value=61 Score=23.07 Aligned_cols=68 Identities=21% Similarity=0.237 Sum_probs=33.4
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhhhhccccccccccCCchhcccCccccHHHhhCC---CCCCCHhhHHHhHH
Q 045881 1 MAGGGRQFIGFTIIIFLLLLASESSAIIMGEDEYIESKQGCEYVFTAFPYCLEFLTGL---YYKPSRKCCNHIKK 72 (130)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~C~~v~~~L~pC~~yv~g~---~~~Ps~~CC~~vk~ 72 (130)
|+.-+-+.+.|.+++.|+-. .+-+...-+.|.-..-.+|..-.+ .-|..-+... +..+|..||..+=.
T Consensus 1 m~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~C~~Kmt--~KCa~EI~a~i~~N~t~s~~CC~~LVk 71 (115)
T PLN00214 1 MSKFSSQITTLFIVVALVCA--FVPVFSVEEAEAKSLWNTCLVKIT--PKCALDIIAVVFENGTLIDPCCNDLVK 71 (115)
T ss_pred CCccccchhHHHHHHHHHHh--cccccchhhhHHHHHHHHHHhhcc--HhhHHHHHHHHHcCCCCchHHHHHHHH
Confidence 45555667767666655544 333333222221111235653222 3366544311 23689999998544
No 14
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=23.94 E-value=1e+02 Score=18.99 Aligned_cols=15 Identities=27% Similarity=0.689 Sum_probs=12.5
Q ss_pred CCCCHhhHHHhHHHH
Q 045881 60 YKPSRKCCNHIKKLN 74 (130)
Q Consensus 60 ~~Ps~~CC~~vk~l~ 74 (130)
...+++||.++..+.
T Consensus 26 ~~i~~~CC~~i~~~g 40 (70)
T PF05617_consen 26 KNIGPECCKAINKMG 40 (70)
T ss_pred CCCChHHHHHHHHHh
Confidence 578999999988864
No 15
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=23.93 E-value=91 Score=24.67 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q 045881 7 QFIGFTIIIFLLLLASESSA 26 (130)
Q Consensus 7 ~~~~~~~~~~~l~~~~~~~~ 26 (130)
+.++|.+|.+|+|++.++..
T Consensus 130 mLIClIIIAVLfLICT~LfL 149 (227)
T PF05399_consen 130 MLICLIIIAVLFLICTLLFL 149 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56788888888877665554
No 16
>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.
Probab=20.11 E-value=71 Score=21.46 Aligned_cols=62 Identities=26% Similarity=0.554 Sum_probs=37.3
Q ss_pred cCccccHHHhhCCC---C-----------CCCHhhHHHhHHHHHhhhccCCCcccccee--eeccccCC-----------
Q 045881 46 TAFPYCLEFLTGLY---Y-----------KPSRKCCNHIKKLNMIAKHRKGNAQRFCYC--IEAMVRGT----------- 98 (130)
Q Consensus 46 ~~L~pC~~yv~g~~---~-----------~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~C--l~~~~~~~----------- 98 (130)
..|.+|..|+.-.. . .....||.-++.+. . -|+| +...+...
T Consensus 13 ~~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i~---------~--qcrC~al~~~~~~~~~~~~~~~~~~ 81 (110)
T cd00261 13 QPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQIP---------E--QCRCEALRQMVQGVIQQQQQQQEQQ 81 (110)
T ss_pred ccCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhCc---------H--hhhHHHHHHHHHHHHHhhhcccccc
Confidence 46889999986321 1 11367999988863 2 3666 43211110
Q ss_pred CC---CCCHHHHhhccccCCCCC
Q 045881 99 QP---PLLASRIQQLPITCNTSL 118 (130)
Q Consensus 99 ~~---~in~~ra~~LP~~Cgv~~ 118 (130)
.. ..-...|..||+.||+..
T Consensus 82 ~~~~~~~~~~~a~~Lp~~C~~~~ 104 (110)
T cd00261 82 QGQEVERMRQAAQNLPSMCNLYP 104 (110)
T ss_pred CcChHHHHHHHHHhhchhcCCCC
Confidence 00 122468999999999986
Done!