BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045882
(832 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WTX|A Chain A, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|B Chain B, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|C Chain C, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|D Chain D, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
Length = 474
Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/410 (30%), Positives = 207/410 (50%), Gaps = 24/410 (5%)
Query: 137 LSSDLQKKFYHGFCKQYLWPLFHYMLPICPDYGFRFDRLLWRAYVSANKVFADKIMEVIN 196
LS ++Y+ F LWP FHY L + +F R W Y+ N + ADK++ ++
Sbjct: 68 LSEQDLDEYYNQFSNAVLWPAFHYRLDLV-----QFQRPAWDGYLRVNALLADKLLPLLQ 122
Query: 197 PEEDYVWIHDYHLMVLPTFLRRRFHRVKLGFFLHSPFPSSEIYRTLPVRNEILKALLNAD 256
++D +WIHDYHL+ LR+R ++GFFLH PFP+ EI+ LP + +L+ L + D
Sbjct: 123 -DDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYD 181
Query: 257 LIGFHTFDYARHFLSCCSRMLGLDYESKRGYIGLEYFGRTIYVKILHVGIHMGRLESALN 316
L+GF T + FL C S + + S + + +G+ ++ +GI +
Sbjct: 182 LLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTA---WGKAFRTEVYPIGIEPKEIAKQAA 238
Query: 317 HPSSSIKVKEIREQFKGKKVIVGVDDMDIFKGISLKLLAMEQLLKVHPELQGKLVLVQIV 376
P K+ +++ + K + I V+ +D KG+ + LA E LL+ +P+ GK+ QI
Sbjct: 239 GPLPP-KLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIA 297
Query: 377 NPARSTGKDVQDAKLETYTITKRINETYGVPGYEPVILIDRPVPLHEKTAYYALAECCIV 436
+R + QD + + RIN YG G+ P+ +++ + ++ +V
Sbjct: 298 PTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLV 357
Query: 437 NAVRDGMNLMPYKYTICRQGTPKMDEAMELASVCPRTSMLVISEFIGCSPSLSGAIRVNP 496
+RDGMNL+ +Y + D A +LV+S+F G + L+ A+ VNP
Sbjct: 358 TPLRDGMNLVAKEYVAAQ------DPA--------NPGVLVLSQFAGAANELTSALIVNP 403
Query: 497 WDIDAVADALHDAITMSDVEKQLRHEKHYRYICSHDVAYWAHSFMQDLER 546
+D D VA AL A+TMS E+ RH + I +D+ +W F+ DL++
Sbjct: 404 YDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQ 453
>pdb|1UQU|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQU|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQT|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose.
pdb|1UQT|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose
Length = 482
Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/410 (30%), Positives = 207/410 (50%), Gaps = 24/410 (5%)
Query: 137 LSSDLQKKFYHGFCKQYLWPLFHYMLPICPDYGFRFDRLLWRAYVSANKVFADKIMEVIN 196
LS ++Y+ F LWP FHY L + +F R W Y+ N + ADK++ ++
Sbjct: 68 LSEQDLDEYYNQFSNAVLWPAFHYRLDLV-----QFQRPAWDGYLRVNALLADKLLPLLQ 122
Query: 197 PEEDYVWIHDYHLMVLPTFLRRRFHRVKLGFFLHSPFPSSEIYRTLPVRNEILKALLNAD 256
++D +WIHDYHL+ LR+R ++GFFLH PFP+ EI+ LP + +L+ L + D
Sbjct: 123 -DDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYD 181
Query: 257 LIGFHTFDYARHFLSCCSRMLGLDYESKRGYIGLEYFGRTIYVKILHVGIHMGRLESALN 316
L+GF T + FL C S + + S + + +G+ ++ +GI +
Sbjct: 182 LLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTA---WGKAFRTEVYPIGIEPKEIAKQAA 238
Query: 317 HPSSSIKVKEIREQFKGKKVIVGVDDMDIFKGISLKLLAMEQLLKVHPELQGKLVLVQIV 376
P K+ +++ + K + I V+ +D KG+ + LA E LL+ +P+ GK+ QI
Sbjct: 239 GPLPP-KLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIA 297
Query: 377 NPARSTGKDVQDAKLETYTITKRINETYGVPGYEPVILIDRPVPLHEKTAYYALAECCIV 436
+R + QD + + RIN YG G+ P+ +++ + ++ +V
Sbjct: 298 PTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLV 357
Query: 437 NAVRDGMNLMPYKYTICRQGTPKMDEAMELASVCPRTSMLVISEFIGCSPSLSGAIRVNP 496
+RDGMNL+ +Y + D A +LV+S+F G + L+ A+ VNP
Sbjct: 358 TPLRDGMNLVAKEYVAAQ------DPA--------NPGVLVLSQFAGAANELTSALIVNP 403
Query: 497 WDIDAVADALHDAITMSDVEKQLRHEKHYRYICSHDVAYWAHSFMQDLER 546
+D D VA AL A+TMS E+ RH + I +D+ +W F+ DL++
Sbjct: 404 YDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQ 453
>pdb|1GZ5|A Chain A, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|B Chain B, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|C Chain C, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|D Chain D, Trehalose-6-Phosphate Synthase. Otsa
Length = 456
Score = 192 bits (487), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 122/410 (29%), Positives = 205/410 (50%), Gaps = 24/410 (5%)
Query: 137 LSSDLQKKFYHGFCKQYLWPLFHYMLPICPDYGFRFDRLLWRAYVSANKVFADKIMEVIN 196
LS ++Y+ F LWP FHY L + +F R W Y+ N + ADK++ ++
Sbjct: 67 LSEQDLDEYYNQFSNAVLWPAFHYRLDLV-----QFQRPAWDGYLRVNALLADKLLPLLQ 121
Query: 197 PEEDYVWIHDYHLMVLPTFLRRRFHRVKLGFFLHSPFPSSEIYRTLPVRNEILKALLNAD 256
++D +WIHDYHL+ LR+R ++GFFLH PFP+ EI+ LP + +L+ L + D
Sbjct: 122 -DDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYD 180
Query: 257 LIGFHTFDYARHFLSCCSRMLGLDYESKRGYIGLEYFGRTIYVKILHVGIHMGRLESALN 316
L+GF T + FL C S + + S + + +G+ ++ +GI +
Sbjct: 181 LLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTA---WGKAFRTEVYPIGIEPKEIAKQAA 237
Query: 317 HPSSSIKVKEIREQFKGKKVIVGVDDMDIFKGISLKLLAMEQLLKVHPELQGKLVLVQIV 376
P K+ +++ + K + I V+ +D KG+ + LA E LL+ +P+ GK+ QI
Sbjct: 238 GPLPP-KLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIA 296
Query: 377 NPARSTGKDVQDAKLETYTITKRINETYGVPGYEPVILIDRPVPLHEKTAYYALAECCIV 436
+R + QD + + RIN YG G+ P+ +++ + ++ +V
Sbjct: 297 PTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLXKIFRYSDVGLV 356
Query: 437 NAVRDGMNLMPYKYTICRQGTPKMDEAMELASVCPRTSMLVISEFIGCSPSLSGAIRVNP 496
+RDG NL+ +Y + D A +LV+S+F G + L+ A+ VNP
Sbjct: 357 TPLRDGXNLVAKEYVAAQ------DPA--------NPGVLVLSQFAGAANELTSALIVNP 402
Query: 497 WDIDAVADALHDAITMSDVEKQLRHEKHYRYICSHDVAYWAHSFMQDLER 546
+D D VA AL A+T S E+ RH + I +D+ +W F+ DL++
Sbjct: 403 YDRDEVAAALDRALTXSLAERISRHAEXLDVIVKNDINHWQECFISDLKQ 452
>pdb|4F96|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F96|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F97|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F97|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F9F|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|C Chain C, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|D Chain D, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|E Chain E, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|F Chain F, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|3VDM|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDM|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDN|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
Length = 497
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 136/328 (41%), Gaps = 34/328 (10%)
Query: 177 WRAYVSANKVFADKIMEVINPEEDYVW-IHDYHLMVLPTFLRRRFHRVKLGFFLHSPFPS 235
W + + FAD I++ D V+ +HDY L+ +P LR + + F+H P+PS
Sbjct: 128 WADFGRFTRDFADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPS 187
Query: 236 SEIYRTLP--VRNEILKALLNADLIGFHTFDYARHFLSCCSRMLGLDYESKRGYIGLEYF 293
++ +R LP +R IL +L A IGF + R+FL + +L D R + +E+
Sbjct: 188 ADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFLESVADLLP-DARIDREAMTVEWR 246
Query: 294 GRTIYVKILHVGIHMGRLESALNHPSSSIKVKE-IREQFKGKKVIVGVDDMDIFKGISLK 352
G ++ + +G S L + ++ E I E G +++V D K
Sbjct: 247 GHRTRLRTMPLGY------SPLTLDGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNAERA 300
Query: 353 LLAMEQLLKVHPELQGKLVLVQIVNPARSTGKDVQDAKLETYTITKRINETYGVPGYEPV 412
+ A L L+ +LV++ NP R D T N G
Sbjct: 301 VRAF-VLAARGGGLEKTRMLVRM-NPNRLYVPANADYVHRVETAVAEANAELG----SDT 354
Query: 413 ILIDRPVPLHEKTAYYALAECCIVNAVRDGMNLMPYKYTICRQGTPKMDEAMELASVCPR 472
+ ID ++ A + A+ I N+ DG NL ++ + + R
Sbjct: 355 VRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNE----------------R 398
Query: 473 TSMLVISEFIGCSPSLSGAIR-VNPWDI 499
+ +++SE G + L R VNP+D+
Sbjct: 399 DADVILSETCGAAEVLGEYCRSVNPFDL 426
>pdb|3T5T|A Chain A, Vall From Streptomyces Hygroscopicus In Apo Form
pdb|3T5T|B Chain B, Vall From Streptomyces Hygroscopicus In Apo Form
Length = 496
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 136/328 (41%), Gaps = 34/328 (10%)
Query: 177 WRAYVSANKVFADKIMEVINPEEDYVW-IHDYHLMVLPTFLRRRFHRVKLGFFLHSPFPS 235
W + + FAD I++ D V+ +HDY L+ +P LR + + F+H P+PS
Sbjct: 127 WADFGRFTRDFADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPS 186
Query: 236 SEIYRTLP--VRNEILKALLNADLIGFHTFDYARHFLSCCSRMLGLDYESKRGYIGLEYF 293
++ +R LP +R IL +L A IGF + R+FL + +L D R + +E+
Sbjct: 187 ADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFLESVADLLP-DARIDREAMTVEWR 245
Query: 294 GRTIYVKILHVGIHMGRLESALNHPSSSIKVKE-IREQFKGKKVIVGVDDMDIFKGISLK 352
G ++ + +G S L + ++ E I E G +++V D K
Sbjct: 246 GHRTRLRTMPLGY------SPLTLDGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNAERA 299
Query: 353 LLAMEQLLKVHPELQGKLVLVQIVNPARSTGKDVQDAKLETYTITKRINETYGVPGYEPV 412
+ A L L+ +LV++ NP R D T N G
Sbjct: 300 VRAF-VLAARGGGLEKTRMLVRM-NPNRLYVPANADYVHRVETAVAEANAELG----SDT 353
Query: 413 ILIDRPVPLHEKTAYYALAECCIVNAVRDGMNLMPYKYTICRQGTPKMDEAMELASVCPR 472
+ ID ++ A + A+ I N+ DG NL ++ + + R
Sbjct: 354 VRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNE----------------R 397
Query: 473 TSMLVISEFIGCSPSLSGAIR-VNPWDI 499
+ +++SE G + L R VNP+D+
Sbjct: 398 DADVILSETCGAAEVLGEYCRSVNPFDL 425
>pdb|3T7D|A Chain A, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
pdb|3T7D|B Chain B, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
Length = 497
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 131/328 (39%), Gaps = 34/328 (10%)
Query: 177 WRAYVSANKVFADKIMEVINPEEDYVW-IHDYHLMVLPTFLRRRFHRVKLGFFLHSPFPS 235
W + + FAD I++ D V+ +HDY L+ +P LR + + F+H P+PS
Sbjct: 128 WADFGRFTRDFADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPS 187
Query: 236 SEIYRTLP--VRNEILKALLNADLIGFHTFDYARHFLSCCSRMLGLDYESKRGYIGLEYF 293
++ +R LP +R IL L A IGF + R+FL + +L D R +E+
Sbjct: 188 ADYWRILPKEIRTGILHGXLPATTIGFFADRWCRNFLESVADLLP-DARIDREAXTVEWR 246
Query: 294 GRTIYVKILHVGIHMGRLESALNHPSSSIKVKE-IREQFKGKKVIVGVDDMDIFKGISLK 352
G ++ +G S L + ++ E I E G +++V D K
Sbjct: 247 GHRTRLRTXPLGY------SPLTLDGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNAERA 300
Query: 353 LLAMEQLLKVHPELQGKLVLVQIVNPARSTGKDVQDAKLETYTITKRINETYGVPGYEPV 412
+ A L L+ LV+ NP R D T N G
Sbjct: 301 VRAF-VLAARGGGLEKTRXLVR-XNPNRLYVPANADYVHRVETAVAEANAELG----SDT 354
Query: 413 ILIDRPVPLHEKTAYYALAECCIVNAVRDGMNLMPYKYTICRQGTPKMDEAMELASVCPR 472
+ ID ++ A + A+ I N+ DG NL ++ + + R
Sbjct: 355 VRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNE----------------R 398
Query: 473 TSMLVISEFIGCSPSLSGAIR-VNPWDI 499
+ +++SE G + L R VNP+D+
Sbjct: 399 DADVILSETCGAAEVLGEYCRSVNPFDL 426
>pdb|1U02|A Chain A, Crystal Structure Of Trehalose-6-Phosphate Phosphatase
Related Protein
Length = 239
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 94/239 (39%), Gaps = 35/239 (14%)
Query: 582 IFLDYDGTVVPHHALIKKPSRDVIYV-LRELCGDSNN--TTFIVSGRGKVSLGEWLAPCE 638
IFLDYDGT+VP +I P L L D T+IV+GR + +L P
Sbjct: 4 IFLDYDGTLVP---IIXNPEESYADAGLLSLISDLKERFDTYIVTGRSPEEISRFL-PL- 58
Query: 639 NLGIAAEHGYYLRWTKKSEWETSTVAADFEWKRITEPVMKLYTEATDGSYIEKKETALVW 698
++ HG + + + + + RI E + + G I +K A+++
Sbjct: 59 DINXICYHGACSKINGQIVYNNGSDRFLGVFDRIYEDT-RSWVSDFPGLRIYRKNLAVLY 117
Query: 699 HYQDAAPGFGSCQAK-ELLDHLESVLANEPVVVKRGYNIVEVKPQGVTKGLVAEKVLSTM 757
H G K +L +E + V G I+E++ GV KG V
Sbjct: 118 HL-----GLXGADXKPKLRSRIEEIARIFGVETYYGKXIIELRVPGVNKGSAIRSV---- 168
Query: 758 ISDGKLPDFVLCVGDDRSDEDMFESISQATYGSSLPIAPEIFACTVGQKPSKARYYLDD 816
G+ P + GDD +DE FE+ A VG+ + A++++ D
Sbjct: 169 --RGERP--AIIAGDDATDEAAFEANDDA------------LTIKVGEGETHAKFHVAD 211
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 108/286 (37%), Gaps = 41/286 (14%)
Query: 395 TITKRINETYGVPGYEPVILIDRPVPLHEKTAYYALAECCIVNAVRDGMN-----LMPYK 449
TI + + Y + Y P ++ +HE +++ + I+ + D N L P
Sbjct: 496 TIHEGLCNMYNIQAY-PTTVVFNQSSIHEYEGHHSAEQ--ILEFIEDLRNPSVVSLTPST 552
Query: 450 YT-ICRQGTPKMDEA--MELASVCPRTSMLVISEFIGCSPSLSGAIRVNPWDIDAVADAL 506
+ + +Q K DE ++ S S +++ E+ + +L+G I V D
Sbjct: 553 FNELVKQR--KHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVD----CGQY 606
Query: 507 HDAITMSDVEKQLRHEKHYRYICSHDVAYWAHSFMQDLERACRDHYSKRCWGIGFGLSLS 566
H T +V+ R+ + Y AY HS+ RD YS R WG+GF S
Sbjct: 607 HSFCTQENVQ---RYPEIRFYPQKSSKAYQYHSY----NGWNRDAYSLRSWGLGFLPQAS 659
Query: 567 VDRIVDAYKRTSRRAIFLDYDGTVVPHHALIKKPSRDVIYVLRELCGDSNNTTFIVSGR- 625
+D +T + VV +A PS++ L ++ G+
Sbjct: 660 IDLT----PQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLAR-------MIKGKV 708
Query: 626 --GKVSLGEWLAPCENLGIAAEHG---YYLRWTKKSEWETSTVAAD 666
GKV + C+ GI A Y KKS WE + D
Sbjct: 709 RAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRD 754
>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei,
Pb000659.00.0
pdb|3N9X|B Chain B, Crystal Structure Of Map Kinase From Plasmodium Berghei,
Pb000659.00.0
Length = 432
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 311 LESALNHPSSSIKVKEIREQFKGKKVIVGVDDMDIFKGISLKLLAMEQLLKVHPEL 366
++ AL+HP K+ E F KK+I+ DD + L+ + ++++ HPEL
Sbjct: 356 IDQALDHPYLKDVRKKKLENFSTKKIILPFDDWMVLSETQLRYIFLKEVQSFHPEL 411
>pdb|3TUU|A Chain A, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|B Chain B, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|C Chain C, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|D Chain D, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|E Chain E, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|F Chain F, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|G Chain G, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|H Chain H, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
Length = 346
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 705 PGFGSCQAKELLDHLESVLANEPVVVKRGYNIVEVKPQGVTKGLVAEKVLSTMISDGKLP 764
P +G + L+ H ESVL P V+ YN+ Q + G V+ T+ L
Sbjct: 149 PYYGKTSLEGLVSHFESVLPMGPTVI---YNVPSRTGQDIPPG-----VIHTVAQSANLA 200
Query: 765 DFVLCVGDDR 774
CVG+DR
Sbjct: 201 GVXECVGNDR 210
>pdb|2V2B|A Chain A, L-rhamnulose-1-phosphate Aldolase From Escherichia Coli (
Mutant E117s-e192a-k248g-r253a-e254a)
Length = 274
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 617 NTTFIVSGRGKVSLGEWLAPCENLGI----AAEHGYYLRWTKKSEW-ETSTVAADF 667
NT FIV+G GK L P NLGI + GY++ W +E TS++ A F
Sbjct: 67 NTPFIVTGSGKFFRNVQLDPAANLGIVKVDSDGAGYHILWGLTNEAVPTSSLPAHF 122
>pdb|4CTS|A Chain A, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|4CTS|B Chain B, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|1CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
pdb|3ENJ|A Chain A, Structure Of Pig Heart Citrate Synthase At 1.78 A
Resolution
Length = 437
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 355 AMEQLLKVHPELQGKLVLVQIVNPARSTGKDVQDAKLETYTITKRINETYGVPGYEPVIL 414
AM L L + VLV + + GKDV D KL Y I +N VPGY +L
Sbjct: 265 AMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDY-IWNTLNSGRVVPGYGHAVL 323
>pdb|2CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
Length = 437
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 355 AMEQLLKVHPELQGKLVLVQIVNPARSTGKDVQDAKLETYTITKRINETYGVPGYEPVIL 414
AM L L + VLV + + GKDV D KL Y I +N VPGY +L
Sbjct: 265 AMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDY-IWNTLNSGRVVPGYGHAVL 323
>pdb|1GT7|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|B Chain B, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|C Chain C, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|D Chain D, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|E Chain E, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|F Chain F, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|G Chain G, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|H Chain H, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|I Chain I, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|J Chain J, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|K Chain K, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|L Chain L, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|M Chain M, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|N Chain N, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|O Chain O, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|P Chain P, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|Q Chain Q, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|R Chain R, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|S Chain S, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|T Chain T, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
Length = 274
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 617 NTTFIVSGRGKVSLGEWLAPCENLGI----AAEHGYYLRWTKKSE 657
NT FIV+G GK L P NLGI + GY++ W +E
Sbjct: 67 NTPFIVTGSGKFFRNVQLDPAANLGIVKVDSDGAGYHILWGLTNE 111
>pdb|1OJR|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
(Mutant E192a)
Length = 274
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 617 NTTFIVSGRGKVSLGEWLAPCENLGI----AAEHGYYLRWTKKSE 657
NT FIV+G GK L P NLGI + GY++ W +E
Sbjct: 67 NTPFIVTGSGKFFRNVQLDPAANLGIVKVDSDGAGYHILWGLTNE 111
>pdb|2V2A|A Chain A, L-rhamnulose-1-phosphate Aldolase From Escherichia Coli (
Mutant E192a-k248g-r253a-e254a)
Length = 274
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 617 NTTFIVSGRGKVSLGEWLAPCENLGI----AAEHGYYLRWTKKSE 657
NT FIV+G GK L P NLGI + GY++ W +E
Sbjct: 67 NTPFIVTGSGKFFRNVQLDPAANLGIVKVDSDGAGYHILWGLTNE 111
>pdb|2UYV|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant Q6y-E192a)
pdb|2UYV|B Chain B, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant Q6y-E192a)
pdb|2UYV|C Chain C, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant Q6y-E192a)
pdb|2UYV|D Chain D, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant Q6y-E192a)
pdb|2V9L|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant Q6y-E192a)
Length = 274
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 617 NTTFIVSGRGKVSLGEWLAPCENLGI----AAEHGYYLRWTKKSE 657
NT FIV+G GK L P NLGI + GY++ W +E
Sbjct: 67 NTPFIVTGSGKFFRNVQLDPAANLGIVKVDSDGAGYHILWGLTNE 111
>pdb|2V9E|A Chain A, L-rhamnulose-1-phosphate Aldolase From Escherichia Coli (
Mutant E192a-k248w-a273s)
pdb|2V9E|B Chain B, L-rhamnulose-1-phosphate Aldolase From Escherichia Coli (
Mutant E192a-k248w-a273s)
pdb|2V9F|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant E192a-K248w-A273s)
Length = 274
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 617 NTTFIVSGRGKVSLGEWLAPCENLGI----AAEHGYYLRWTKKSE 657
NT FIV+G GK L P NLGI + GY++ W +E
Sbjct: 67 NTPFIVTGSGKFFRNVQLDPAANLGIVKVDSDGAGYHILWGLTNE 111
>pdb|2V29|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
(Mutant K15w)
pdb|2V29|B Chain B, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
(Mutant K15w)
Length = 274
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 617 NTTFIVSGRGKVSLGEWLAPCENLGI----AAEHGYYLRWTKKSE 657
NT FIV+G GK L P NLGI + GY++ W +E
Sbjct: 67 NTPFIVTGSGKFFRNVQLDPAANLGIVKVDSDGAGYHILWGLTNE 111
>pdb|2V9I|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant E192a-K248w-L274stop)
pdb|2V9I|B Chain B, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant E192a-K248w-L274stop)
Length = 273
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 617 NTTFIVSGRGKVSLGEWLAPCENLGI----AAEHGYYLRWTKKSE 657
NT FIV+G GK L P NLGI + GY++ W +E
Sbjct: 67 NTPFIVTGSGKFFRNVQLDPAANLGIVKVDSDGAGYHILWGLTNE 111
>pdb|1THQ|A Chain A, Crystal Structure Of Outer Membrane Enzyme Pagp
pdb|1MM4|A Chain A, Solution Nmr Structure Of The Outer Membrane Enzyme Pagp
In Dpc Micelles
pdb|1MM5|A Chain A, Solution Nmr Structure Of The Outer Membrane Enzyme Pagp
In Og Micelles
Length = 170
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 536 WAHSFMQDLERACRDHYSKRCWGIGFGLS 564
W F D E+ D Y++R WG GFGLS
Sbjct: 33 WHARFAYDKEKT--DRYNERPWGGGFGLS 59
>pdb|3GP6|A Chain A, Crystal Structure Of Pagp In SdsMPD
Length = 163
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 536 WAHSFMQDLERACRDHYSKRCWGIGFGLS 564
W F D E+ D Y++R WG GFGLS
Sbjct: 33 WHARFAYDKEKT--DRYNERPWGGGFGLS 59
>pdb|2UYU|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant A88f-E192a)
pdb|2UYU|E Chain E, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant A88f-E192a)
pdb|2V9N|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant A88f-E192a)
pdb|2V9N|B Chain B, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant A88f-E192a)
pdb|2V9N|C Chain C, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant A88f-E192a)
pdb|2V9N|D Chain D, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant A88f-E192a)
Length = 274
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 617 NTTFIVSGRGKVSLGEWLAPCENLGI----AAEHGYYLRWTKKSE 657
NT FIV+G GK L P NLGI + GY++ W +E
Sbjct: 67 NTPFIVTGSGKFFRNVQLDPAFNLGIVKVDSDGAGYHILWGLTNE 111
>pdb|2V9M|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant A87m-T109f-E192a)
pdb|2V9M|B Chain B, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant A87m-T109f-E192a)
pdb|2V9O|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant A87m-T109f-E192a)
pdb|2V9O|E Chain E, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant A87m-T109f-E192a)
Length = 274
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 617 NTTFIVSGRGKVSLGEWLAPCENLGI----AAEHGYYLRW 652
NT FIV+G GK L P NLGI + GY++ W
Sbjct: 67 NTPFIVTGSGKFFRNVQLDPMANLGIVKVDSDGAGYHILW 106
>pdb|2PVH|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVJ|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVK|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVL|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVM|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVN|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|3BE9|A Chain A, Structure-Based Design And Synthesis Of Novel Macrocyclic
Pyrazolo[1,5-A] [1,3,5]triazine Compounds As Potent
Inhibitors Of Protein Kinase Ck2 And Their Anticancer
Activities
Length = 352
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 317 HPSSSIKVKEIREQFKGKKVIVGVDDMDIFKGI-SLKLLAMEQLLKVHPELQGKLVLVQI 375
HP V+ FKG +++V + D D + SL + + + P G Q+
Sbjct: 198 HPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQL 257
Query: 376 VNPARSTGKDVQDAKLETYTI 396
V A+ G D +A L Y I
Sbjct: 258 VKIAKVLGTDGLNAYLNKYRI 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,009,703
Number of Sequences: 62578
Number of extensions: 1072444
Number of successful extensions: 2376
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2352
Number of HSP's gapped (non-prelim): 29
length of query: 832
length of database: 14,973,337
effective HSP length: 107
effective length of query: 725
effective length of database: 8,277,491
effective search space: 6001180975
effective search space used: 6001180975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)