BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045884
(144 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A15|A Chain A, Crystal Structure Of An Xpd Dna Complex
Length = 620
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 33 KKPEKQLRRQGFRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLY 92
K+ E+++R +Y +LFG+ E++ + P S +A R++ DQ E+ Y
Sbjct: 294 KRSEREIRSL----LNYLYLFGEYVENE--KEKVGKVPFSYCSSVASRIIAFSDQDEEKY 347
Query: 93 GKNTYWWIGPIPMINIMDPDQIKEVF 118
G +DP I EV
Sbjct: 348 AAILSPEDGGYMQAACLDPSGILEVL 373
>pdb|1LK9|A Chain A, The Three-Dimensional Structure Of Alliinase From Garlic
pdb|1LK9|B Chain B, The Three-Dimensional Structure Of Alliinase From Garlic
Length = 448
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 83 PLYDQQEKLYGKNTYWWIG-PIPMINIMDPDQIKEVFTNIND 123
P++ +Q K + K Y W G +N+ +P+Q E+ T+ N+
Sbjct: 166 PVFREQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNN 207
>pdb|2VSF|A Chain A, Structure Of Xpd From Thermoplasma Acidophilum
Length = 602
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 33 KKPEKQLRRQGFRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVVPLYDQQEKLY 92
K+ E+++R +Y +LFG+ E++ + P S +A R++ DQ E+ Y
Sbjct: 276 KRSEREIRSL----LNYLYLFGEYVENE--KEKVGKVPFSYCSSVASRIIAFSDQDEEKY 329
Query: 93 GKNTYWWIGPIPMINIMDPDQIKEVF 118
G +DP I EV
Sbjct: 330 AAILSPEDGGYMQAACLDPSGILEVL 355
>pdb|2HOR|A Chain A, Crystal Structure Of Alliinase From Garlic- Apo Form
pdb|2HOX|A Chain A, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|B Chain B, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|C Chain C, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|D Chain D, Alliinase From Allium Sativum (Garlic)
Length = 427
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 83 PLYDQQEKLYGKNTYWWIG-PIPMINIMDPDQIKEVFTNIND 123
P++ +Q K + K Y W G +N+ +P+Q E+ T+ N+
Sbjct: 166 PVFREQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNN 207
>pdb|1BWV|S Chain S, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) Complexed With The Reaction Intermediate
Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
pdb|1BWV|U Chain U, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) Complexed With The Reaction Intermediate
Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
pdb|1BWV|W Chain W, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) Complexed With The Reaction Intermediate
Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
pdb|1BWV|Y Chain Y, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) Complexed With The Reaction Intermediate
Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
Length = 138
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 91 LYGKNTYWWIGPIPMINIMDPDQIKEVFTNINDFQKPKTNPLGKIL 136
++ +N YW I +P+ ++ DP V IN +K ++N K++
Sbjct: 41 IHPRNAYWEIWGLPLFDVTDP---AAVLFEINACRKARSNFYIKVV 83
>pdb|1IWA|B Chain B, Rubisco From Galdieria Partita
pdb|1IWA|D Chain D, Rubisco From Galdieria Partita
pdb|1IWA|F Chain F, Rubisco From Galdieria Partita
pdb|1IWA|H Chain H, Rubisco From Galdieria Partita
pdb|1IWA|J Chain J, Rubisco From Galdieria Partita
pdb|1IWA|L Chain L, Rubisco From Galdieria Partita
pdb|1IWA|N Chain N, Rubisco From Galdieria Partita
pdb|1IWA|P Chain P, Rubisco From Galdieria Partita
Length = 138
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 91 LYGKNTYWWIGPIPMINIMDPDQIKEVFTNINDFQKPKTNPLGKIL 136
++ +N YW I +P+ ++ DP V IN +K ++N K++
Sbjct: 41 IHPRNAYWEIWGLPLFDVTDP---AAVLFEINACRKARSNFYIKVV 83
>pdb|1RAL|A Chain A, Three-Dimensional Structure Of Rat Liver 3alpha-
Hydroxysteroid(Slash)dihydrodiol Dehydrogenase: A Member
Of The Aldo-Keto Reductase Superfamily
Length = 308
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 67 KSKPISLDDDIAPRVVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEVFTNINDFQ 125
+ P+ LDD + + Y Q L G +P+I + +IKE+ T + +FQ
Sbjct: 230 QKSPVLLDDPVLCAIAKKYKQTPALVALRYQLQRGVVPLIRSFNAKRIKEL-TQVFEFQ 287
>pdb|1QR0|A Chain A, Crystal Structure Of The 4'-Phosphopantetheinyl
Transferase Sfp- Coenzyme A Complex
Length = 228
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 28 AWLKPKKPEKQLRRQGFRGNSYRFLFGDVKEHDILSRQ 65
++ P+K EK RR + +++R L GDV ++SRQ
Sbjct: 22 TFISPEKREK-CRRFYHKEDAHRTLLGDVLVRSVISRQ 58
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 84 LYDQQ-EKLYGKNTYWWIGPIPMINIMDPDQIKEVF 118
++D + K YGK ++ G P++ I DPD IK V
Sbjct: 37 MFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVL 72
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 84 LYDQQ-EKLYGKNTYWWIGPIPMINIMDPDQIKEVF 118
++D + K YGK ++ G P++ I DPD IK V
Sbjct: 38 MFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVL 73
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 84 LYDQQ-EKLYGKNTYWWIGPIPMINIMDPDQIKEVF 118
++D + K YGK ++ G P++ I DPD IK V
Sbjct: 39 MFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVL 74
>pdb|3PY9|A Chain A, X-Ray Structural Studies Of The Entire Extra-Cellular
Region Of The SerTHR KINASE PRKC FROM STAPHYLOCOCCUS
AUREUS
Length = 294
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 34 KPEKQLRRQGFRGNSYRFLFGDVKEHDILSRQAKSKPI 71
K +K L +GF+ S D+ E D++S+ K K +
Sbjct: 156 KAKKALEEKGFKVESKEEYSDDIDEGDVISQSPKGKSV 193
>pdb|3PYI|B Chain B, Structure Of The N-Terminal Domain Of C. Elegans Sas-6
pdb|3PYI|A Chain A, Structure Of The N-Terminal Domain Of C. Elegans Sas-6
Length = 170
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 36 EKQLRRQGFRGNSYRFLFGDVKEHDILSRQAKSKPISLDDDIAPRVV 82
EK+L+ + R + + FLF + ++ A+ +++D D P+V+
Sbjct: 50 EKELKFEISRSDDFEFLFSETLNNEKYQILARDHDLTVDFDAFPKVI 96
>pdb|1LWI|A Chain A, 3-Alpha-HydroxysteroidDIHYDRODIOL DEHYDROGENASE FROM
Rattus Norvegicus
pdb|1LWI|B Chain B, 3-Alpha-HydroxysteroidDIHYDRODIOL DEHYDROGENASE FROM
Rattus Norvegicus
Length = 322
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 67 KSKPISLDDDIAPRVVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEVFTNINDFQ 125
+ P+ LDD + + Y Q L G +P+I + +IKE+ T + +FQ
Sbjct: 230 QKSPVLLDDPVLCAIAKKYKQTPALVALRYQLQRGVVPLIRSFNAKRIKEL-TQVFEFQ 287
>pdb|3M9G|A Chain A, Crystal Structure Of The Three-Pasta-Domain Of A SerTHR
KINASE FROM Staphylococcus Aureus
Length = 201
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 34 KPEKQLRRQGFRGNSYRFLFGDVKEHDILSRQAKSKPI 71
K +K L +GF+ S D+ E D++S+ K K +
Sbjct: 151 KAKKALEEKGFKVESKEEYSDDIDEGDVISQSPKGKSV 188
>pdb|1AFS|A Chain A, Recombinant Rat Liver 3-Alpha-Hydroxysteroid Dehydrogenase
(3-Alpha-Hsd) Complexed With Nadp And Testosterone
pdb|1AFS|B Chain B, Recombinant Rat Liver 3-Alpha-Hydroxysteroid Dehydrogenase
(3-Alpha-Hsd) Complexed With Nadp And Testosterone
Length = 323
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 67 KSKPISLDDDIAPRVVPLYDQQEKLYGKNTYWWIGPIPMINIMDPDQIKEVFTNINDFQ 125
+ P+ LDD + + Y Q L G +P+I + +IKE+ T + +FQ
Sbjct: 230 QKSPVLLDDPVLCAIAKKYKQTPALVALRYQLQRGVVPLIRSFNAKRIKEL-TQVFEFQ 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,604,592
Number of Sequences: 62578
Number of extensions: 190520
Number of successful extensions: 350
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 21
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)